Query 042958
Match_columns 1075
No_of_seqs 1130 out of 6979
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.6E-93 8.7E-98 896.1 41.6 721 2-742 12-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-77 1.2E-81 749.6 32.8 643 54-702 80-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1E-64 3.4E-69 631.3 43.0 576 73-709 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-64 5.9E-69 629.2 41.1 591 37-684 4-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.9E-58 1.3E-62 564.2 38.3 541 52-684 16-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-58 4.8E-63 568.1 34.2 533 39-660 14-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-57 1.8E-61 572.5 34.7 531 149-709 8-565 (844)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-56 8E-61 566.4 35.2 539 53-683 9-563 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-56 7.4E-61 548.7 33.8 536 76-709 14-563 (606)
10 4eco_A Uncharacterized protein 100.0 6.7E-58 2.3E-62 561.2 20.3 477 2-518 30-600 (636)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-56 9.5E-61 547.7 31.7 536 52-683 15-561 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 1E-55 3.5E-60 548.8 30.0 494 2-542 269-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 6.7E-51 2.3E-55 496.4 28.9 516 148-711 10-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 8.2E-51 2.8E-55 495.6 28.9 499 53-564 12-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-50 5.3E-55 490.6 23.9 482 37-544 4-512 (549)
16 4eco_A Uncharacterized protein 100.0 4.1E-51 1.4E-55 501.0 16.5 451 73-542 81-600 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-49 1.4E-53 478.1 25.4 484 124-684 8-514 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 3E-48 1E-52 481.9 24.6 458 73-560 323-864 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-47 1.4E-51 469.4 33.5 557 22-680 12-580 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 8E-48 2.7E-52 463.2 23.6 457 172-708 3-485 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-48 1.1E-52 466.8 19.6 450 76-543 3-482 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-46 1.5E-50 460.1 29.7 538 100-708 34-584 (635)
23 3omv_A RAF proto-oncogene seri 100.0 2.9E-46 9.8E-51 408.6 18.9 249 814-1074 35-296 (307)
24 4gt4_A Tyrosine-protein kinase 100.0 4.9E-46 1.7E-50 409.0 15.1 242 816-1074 27-302 (308)
25 4asz_A BDNF/NT-3 growth factor 100.0 4.4E-46 1.5E-50 407.6 13.4 242 815-1074 13-285 (299)
26 4aoj_A High affinity nerve gro 100.0 2.4E-45 8.3E-50 407.5 19.5 242 815-1074 41-315 (329)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-44 3.8E-49 439.4 20.7 454 51-543 34-511 (562)
28 4fih_A Serine/threonine-protei 100.0 1.4E-44 4.7E-49 400.0 18.9 241 815-1071 74-323 (346)
29 4b9d_A Serine/threonine-protei 100.0 2.5E-45 8.6E-50 406.5 12.3 241 815-1071 24-276 (350)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-44 7.7E-49 436.7 21.8 436 48-521 52-513 (562)
31 3hyh_A Carbon catabolite-derep 100.0 2E-44 6.7E-49 387.6 17.8 240 815-1071 13-262 (275)
32 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.4E-44 4.8E-49 393.7 12.4 240 815-1070 32-283 (311)
33 4fie_A Serine/threonine-protei 100.0 1.9E-43 6.7E-48 400.4 21.7 241 815-1071 151-400 (423)
34 3fpq_A Serine/threonine-protei 100.0 8.1E-44 2.8E-48 386.4 17.7 240 818-1071 29-282 (290)
35 1jl5_A Outer protein YOPM; leu 100.0 3E-43 1E-47 412.2 23.8 425 71-568 9-437 (454)
36 4ase_A Vascular endothelial gr 100.0 5.2E-44 1.8E-48 399.8 16.3 252 808-1074 57-343 (353)
37 3hmm_A TGF-beta receptor type- 100.0 1.6E-43 5.5E-48 390.5 16.9 254 815-1074 3-293 (303)
38 4g3f_A NF-kappa-beta-inducing 100.0 1.2E-43 3.9E-48 391.5 12.6 238 815-1073 58-311 (336)
39 3ubd_A Ribosomal protein S6 ki 100.0 1.3E-43 4.4E-48 386.5 11.3 240 815-1071 24-281 (304)
40 3v47_A TOLL-like receptor 5B a 100.0 1E-41 3.5E-46 402.9 24.8 374 73-498 30-412 (455)
41 3v47_A TOLL-like receptor 5B a 100.0 1.5E-41 5.3E-46 401.3 25.8 391 76-523 13-413 (455)
42 1jl5_A Outer protein YOPM; leu 100.0 2.6E-42 8.8E-47 404.2 18.1 420 193-711 11-436 (454)
43 4g31_A Eukaryotic translation 100.0 3.2E-42 1.1E-46 377.8 14.9 239 815-1071 5-279 (299)
44 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-41 1.4E-45 375.4 16.3 288 2-324 6-302 (313)
45 4b99_A Mitogen-activated prote 100.0 2.3E-40 7.9E-45 377.1 17.7 253 815-1071 54-344 (398)
46 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-38 4.6E-43 373.1 26.6 358 68-501 37-394 (457)
47 1o6v_A Internalin A; bacterial 100.0 4.1E-38 1.4E-42 372.3 27.4 345 96-471 45-389 (466)
48 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-38 2E-42 367.6 27.7 354 48-478 42-395 (457)
49 1o6v_A Internalin A; bacterial 100.0 6.2E-38 2.1E-42 370.7 27.8 346 71-447 44-389 (466)
50 4f9c_A Cell division cycle 7-r 100.0 6.9E-39 2.4E-43 361.3 16.4 194 809-1011 15-249 (361)
51 3uto_A Twitchin; kinase, muscl 100.0 3.4E-38 1.2E-42 377.5 17.5 241 815-1071 157-410 (573)
52 3v5w_A G-protein coupled recep 100.0 2.4E-38 8.1E-43 374.1 15.7 243 814-1071 188-449 (689)
53 3uim_A Brassinosteroid insensi 100.0 1.1E-37 3.7E-42 350.9 18.1 268 803-1074 18-307 (326)
54 2id5_A Lingo-1, leucine rich r 100.0 6.1E-37 2.1E-41 364.0 25.4 302 73-398 32-333 (477)
55 2id5_A Lingo-1, leucine rich r 100.0 3E-37 1E-41 366.6 20.2 312 38-350 12-333 (477)
56 2qkw_B Protein kinase; three-h 100.0 5.4E-37 1.9E-41 344.3 19.3 259 808-1074 32-311 (321)
57 3fxz_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 335.8 21.0 242 814-1071 19-269 (297)
58 3p86_A Serine/threonine-protei 100.0 5.1E-37 1.8E-41 341.7 15.9 251 808-1074 30-294 (309)
59 2c30_A Serine/threonine-protei 100.0 4.4E-36 1.5E-40 336.3 23.6 253 803-1071 23-294 (321)
60 3s95_A LIMK-1, LIM domain kina 100.0 4.5E-36 1.5E-40 335.0 21.4 244 814-1074 9-278 (310)
61 3fe3_A MAP/microtubule affinit 100.0 2.4E-36 8.3E-41 338.5 18.7 240 814-1071 14-264 (328)
62 3niz_A Rhodanese family protei 100.0 3.6E-36 1.2E-40 335.5 19.9 253 814-1071 20-300 (311)
63 1o6l_A RAC-beta serine/threoni 100.0 2.9E-36 9.8E-41 338.7 17.7 242 814-1071 4-260 (337)
64 3o6n_A APL1; leucine-rich repe 100.0 2.3E-36 7.9E-41 349.0 17.0 332 385-730 45-377 (390)
65 2nru_A Interleukin-1 receptor- 100.0 2.5E-35 8.7E-40 328.6 24.7 264 803-1074 13-302 (307)
66 3lb7_A RAF proto-oncogene seri 100.0 6.4E-36 2.2E-40 332.6 19.6 249 814-1074 35-296 (307)
67 3zgw_A Maternal embryonic leuc 100.0 3E-36 1E-40 339.5 17.0 241 813-1071 8-260 (347)
68 3soa_A Calcium/calmodulin-depe 100.0 4.2E-36 1.4E-40 349.5 18.4 247 812-1071 8-267 (444)
69 3o0g_A Cell division protein k 100.0 5.1E-36 1.8E-40 331.5 17.9 252 815-1071 2-282 (292)
70 2psq_A Fibroblast growth facto 100.0 5.4E-36 1.8E-40 342.1 18.5 243 814-1074 80-360 (370)
71 3oja_B Anopheles plasmodium-re 100.0 2.9E-36 9.8E-41 367.4 16.8 334 385-732 51-385 (597)
72 4eqm_A Protein kinase; transfe 100.0 3.7E-36 1.3E-40 332.6 16.2 249 814-1074 10-271 (294)
73 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.4E-36 8.2E-41 339.0 14.5 241 814-1071 8-258 (336)
74 2yab_A Death-associated protei 100.0 6.7E-36 2.3E-40 338.9 17.9 245 814-1071 11-272 (361)
75 1ob3_A PFPK5, cell division co 100.0 6.2E-36 2.1E-40 330.1 17.2 252 815-1071 2-280 (288)
76 4dc2_A Protein kinase C IOTA t 100.0 5.5E-36 1.9E-40 342.4 17.0 245 814-1066 51-307 (396)
77 3q4u_A Activin receptor type-1 100.0 1E-35 3.4E-40 330.9 18.6 250 814-1074 7-298 (301)
78 3soc_A Activin receptor type-2 100.0 3.6E-36 1.2E-40 337.4 15.0 256 814-1074 23-314 (322)
79 2zv2_A Calcium/calmodulin-depe 100.0 8.1E-36 2.8E-40 331.0 17.4 245 814-1071 12-292 (298)
80 3o6n_A APL1; leucine-rich repe 100.0 2.2E-35 7.6E-40 340.7 21.1 311 71-423 43-353 (390)
81 2bdw_A Hypothetical protein K1 100.0 9.2E-36 3.2E-40 338.9 17.4 245 813-1071 27-284 (362)
82 3a8x_A Protein kinase C IOTA t 100.0 1.6E-35 5.6E-40 334.2 19.3 245 814-1066 8-264 (345)
83 3kul_A Ephrin type-A receptor 100.0 1.8E-35 6.2E-40 331.9 19.4 243 814-1074 48-309 (325)
84 3txo_A PKC-L, NPKC-ETA, protei 100.0 3E-36 1E-40 340.9 12.8 243 813-1071 21-280 (353)
85 2eue_A Carbon catabolite derep 100.0 1.3E-35 4.5E-40 325.2 17.3 240 815-1071 13-262 (275)
86 1tki_A Titin; serine kinase, m 100.0 6.8E-36 2.3E-40 334.4 15.3 241 814-1071 4-257 (321)
87 3vhe_A Vascular endothelial gr 100.0 3.1E-36 1E-40 344.1 11.9 254 806-1074 13-351 (359)
88 3sxs_A Cytoplasmic tyrosine-pr 100.0 3E-35 1E-39 321.0 19.0 241 814-1074 7-260 (268)
89 3poz_A Epidermal growth factor 100.0 8.3E-36 2.8E-40 335.2 15.0 245 814-1074 14-274 (327)
90 4euu_A Serine/threonine-protei 100.0 3.1E-35 1.1E-39 329.7 19.5 253 814-1072 8-303 (319)
91 3cbl_A C-FES, proto-oncogene t 100.0 1.1E-35 3.8E-40 340.8 15.9 245 813-1074 112-370 (377)
92 3c0i_A Peripheral plasma membr 100.0 4.9E-36 1.7E-40 340.2 12.5 245 814-1071 23-286 (351)
93 2y0a_A Death-associated protei 100.0 1.4E-35 4.8E-40 333.0 15.7 246 814-1071 10-271 (326)
94 2qol_A Ephrin receptor; recept 100.0 2.4E-35 8.3E-40 336.9 17.9 244 814-1074 44-305 (373)
95 3p1a_A MYT1 kinase, membrane-a 100.0 2.2E-35 7.7E-40 329.2 17.2 238 815-1071 57-304 (311)
96 4fr4_A YANK1, serine/threonine 100.0 2.5E-35 8.4E-40 335.9 16.8 244 814-1071 14-271 (384)
97 2pmi_A Negative RE, cyclin-dep 100.0 4.7E-35 1.6E-39 327.5 18.8 252 814-1071 4-293 (317)
98 4f0f_A Serine/threonine-protei 100.0 1E-34 3.4E-39 320.3 21.2 246 814-1074 18-285 (287)
99 3oja_B Anopheles plasmodium-re 100.0 8.9E-35 3.1E-39 354.2 22.8 312 71-424 49-360 (597)
100 3qd2_B Eukaryotic translation 100.0 3.4E-35 1.2E-39 331.5 17.4 240 814-1071 5-325 (332)
101 1xjd_A Protein kinase C, theta 100.0 8.7E-36 3E-40 335.7 12.4 245 811-1071 13-269 (345)
102 3ttj_A Mitogen-activated prote 100.0 4.8E-35 1.6E-39 343.6 19.2 253 814-1071 61-355 (464)
103 3ugc_A Tyrosine-protein kinase 100.0 3.6E-35 1.2E-39 325.3 17.1 251 814-1074 9-287 (295)
104 3tki_A Serine/threonine-protei 100.0 3E-35 1E-39 329.6 16.5 244 814-1071 6-261 (323)
105 1qcf_A Haematopoetic cell kina 100.0 2.8E-35 9.4E-40 346.0 16.8 245 812-1074 185-440 (454)
106 4hcu_A Tyrosine-protein kinase 100.0 3.8E-35 1.3E-39 320.4 16.6 242 814-1074 9-262 (269)
107 1fot_A TPK1 delta, CAMP-depend 100.0 4E-35 1.4E-39 327.1 16.8 239 814-1071 5-258 (318)
108 1u5q_A Serine/threonine protei 100.0 1.9E-35 6.5E-40 334.3 14.3 240 815-1071 54-305 (348)
109 3cok_A Serine/threonine-protei 100.0 2.9E-35 9.9E-40 323.1 15.3 242 814-1071 10-262 (278)
110 3a62_A Ribosomal protein S6 ki 100.0 7E-35 2.4E-39 327.4 18.7 242 814-1071 16-276 (327)
111 3dtc_A Mitogen-activated prote 100.0 2.1E-35 7.3E-40 322.8 14.0 247 814-1074 6-269 (271)
112 3dbq_A Dual specificity protei 100.0 3.1E-35 1.1E-39 332.9 15.8 243 814-1071 8-273 (343)
113 2rku_A Serine/threonine-protei 100.0 8.2E-35 2.8E-39 322.3 18.7 242 814-1071 14-265 (294)
114 2izr_A Casein kinase I isoform 100.0 6.2E-36 2.1E-40 337.0 9.7 246 814-1074 8-277 (330)
115 1k9a_A Carboxyl-terminal SRC k 100.0 1.1E-34 3.7E-39 340.3 20.6 238 814-1074 192-441 (450)
116 1mp8_A Focal adhesion kinase 1 100.0 3.3E-35 1.1E-39 323.0 15.1 245 813-1074 13-272 (281)
117 1luf_A Muscle-specific tyrosin 100.0 3.2E-35 1.1E-39 333.3 15.3 247 811-1074 43-331 (343)
118 3og7_A AKAP9-BRAF fusion prote 100.0 4.4E-35 1.5E-39 323.5 15.8 250 813-1074 22-284 (289)
119 1kob_A Twitchin; kinase, intra 100.0 7E-35 2.4E-39 333.5 18.0 243 814-1071 50-304 (387)
120 2i0e_A Protein kinase C-beta I 100.0 2.9E-35 1E-39 332.5 14.7 243 813-1071 18-276 (353)
121 3kk8_A Calcium/calmodulin depe 100.0 7.6E-35 2.6E-39 320.8 17.5 244 814-1071 5-261 (284)
122 4agu_A Cyclin-dependent kinase 100.0 1.1E-34 3.6E-39 324.2 18.8 252 815-1071 3-284 (311)
123 3ork_A Serine/threonine protei 100.0 1.4E-35 4.7E-40 331.2 11.3 247 814-1071 11-273 (311)
124 3dls_A PAS domain-containing s 100.0 3.4E-35 1.2E-39 330.8 14.6 238 813-1072 22-275 (335)
125 3gen_A Tyrosine-protein kinase 100.0 7.8E-35 2.7E-39 320.5 17.1 243 813-1074 22-276 (283)
126 2wqm_A Serine/threonine-protei 100.0 8.1E-35 2.8E-39 325.0 17.2 250 814-1074 31-293 (310)
127 1rdq_E PKA C-alpha, CAMP-depen 100.0 5.3E-35 1.8E-39 330.5 15.8 239 814-1071 40-293 (350)
128 2y94_A 5'-AMP-activated protei 100.0 8.2E-35 2.8E-39 340.6 17.9 241 814-1071 15-266 (476)
129 2w4o_A Calcium/calmodulin-depe 100.0 5E-35 1.7E-39 331.5 15.5 242 813-1071 51-305 (349)
130 3kn6_A Ribosomal protein S6 ki 100.0 6.5E-35 2.2E-39 327.2 16.2 241 820-1071 16-270 (325)
131 2r5t_A Serine/threonine-protei 100.0 3.3E-35 1.1E-39 334.4 13.9 239 814-1068 37-286 (373)
132 3l9p_A Anaplastic lymphoma kin 100.0 4.3E-35 1.5E-39 334.4 14.9 244 814-1074 70-341 (367)
133 3qup_A Tyrosine-protein kinase 100.0 1.1E-34 3.9E-39 325.8 18.0 247 812-1074 20-294 (323)
134 4ejn_A RAC-alpha serine/threon 100.0 2.6E-35 8.8E-40 345.8 13.2 242 814-1071 147-404 (446)
135 3lzb_A Epidermal growth factor 100.0 5.6E-35 1.9E-39 328.2 15.4 245 814-1074 14-274 (327)
136 2owb_A Serine/threonine-protei 100.0 1E-34 3.5E-39 327.6 17.5 242 814-1071 40-291 (335)
137 3kex_A Receptor tyrosine-prote 100.0 3.5E-35 1.2E-39 330.0 13.6 245 814-1074 12-272 (325)
138 2zmd_A Dual specificity protei 100.0 1.1E-34 3.8E-39 333.5 18.0 242 815-1071 56-320 (390)
139 3tt0_A Basic fibroblast growth 100.0 9E-35 3.1E-39 334.1 17.2 243 814-1074 68-348 (382)
140 3rp9_A Mitogen-activated prote 100.0 1.3E-34 4.5E-39 341.4 19.0 188 814-1005 52-280 (458)
141 2i1m_A Macrophage colony-stimu 100.0 2.2E-35 7.7E-40 333.1 11.7 248 811-1074 42-322 (333)
142 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1E-34 3.5E-39 340.7 17.6 243 813-1074 182-436 (452)
143 2h34_A Serine/threonine-protei 100.0 7.4E-35 2.5E-39 324.8 15.5 249 813-1074 32-292 (309)
144 1csn_A Casein kinase-1; phosph 100.0 9E-35 3.1E-39 322.7 16.2 249 814-1074 9-279 (298)
145 3fdn_A Serine/threonine-protei 100.0 7.7E-35 2.6E-39 319.8 15.3 241 813-1071 7-257 (279)
146 3c1x_A Hepatocyte growth facto 100.0 9.1E-35 3.1E-39 331.6 16.1 243 816-1074 90-351 (373)
147 3v8s_A RHO-associated protein 100.0 6.7E-36 2.3E-40 343.7 6.7 252 808-1071 62-329 (410)
148 3g33_A Cell division protein k 100.0 4.7E-35 1.6E-39 326.5 13.3 254 813-1071 7-296 (308)
149 2x4f_A Myosin light chain kina 100.0 9.8E-35 3.4E-39 331.6 16.2 236 820-1071 94-342 (373)
150 2eva_A TAK1 kinase - TAB1 chim 100.0 1.8E-34 6.1E-39 321.3 17.5 242 814-1074 7-259 (307)
151 2ivs_A Proto-oncogene tyrosine 100.0 1E-34 3.4E-39 324.9 15.5 245 813-1074 21-307 (314)
152 3mdy_A Bone morphogenetic prot 100.0 3.8E-34 1.3E-38 323.6 20.4 257 810-1074 32-327 (337)
153 3uzp_A CKI-delta, CKID, casein 100.0 1.5E-34 5.1E-39 320.6 16.6 249 814-1074 8-276 (296)
154 4aw2_A Serine/threonine-protei 100.0 1.2E-35 4.1E-40 344.2 8.1 254 807-1071 66-338 (437)
155 4hgt_A Casein kinase I isoform 100.0 9.3E-35 3.2E-39 322.2 14.9 250 813-1074 7-276 (296)
156 3mtl_A Cell division protein k 100.0 6.3E-35 2.1E-39 327.6 13.5 251 815-1071 2-281 (324)
157 3gni_B Strad alpha; kinase fol 100.0 1.6E-34 5.6E-39 333.2 17.0 254 814-1071 24-333 (389)
158 2a2a_A Death-associated protei 100.0 1.4E-34 4.9E-39 324.5 16.1 245 814-1071 11-272 (321)
159 3cc6_A Protein tyrosine kinase 100.0 2.6E-34 8.8E-39 316.0 17.8 246 813-1074 10-269 (281)
160 1t46_A HOMO sapiens V-KIT hard 100.0 9.6E-35 3.3E-39 324.9 14.6 246 813-1074 21-303 (313)
161 1qpc_A LCK kinase; alpha beta 100.0 1.6E-34 5.4E-39 317.3 16.0 243 813-1074 11-265 (279)
162 3i6u_A CDS1, serine/threonine- 100.0 7.2E-35 2.5E-39 338.5 13.9 249 812-1071 132-399 (419)
163 2qr7_A Ribosomal protein S6 ki 100.0 7.8E-35 2.7E-39 328.2 13.8 243 813-1071 20-277 (342)
164 3oz6_A Mitogen-activated prote 100.0 1.7E-34 5.8E-39 332.9 16.7 255 813-1071 7-328 (388)
165 1ua2_A CAK, cell division prot 100.0 1.7E-34 5.9E-39 327.2 16.4 254 812-1072 7-292 (346)
166 3mi9_A Cell division protein k 100.0 3.2E-34 1.1E-38 326.1 18.7 252 814-1071 16-311 (351)
167 3hko_A Calcium/calmodulin-depe 100.0 7.9E-35 2.7E-39 330.4 13.6 250 810-1071 21-330 (345)
168 3uc3_A Serine/threonine-protei 100.0 2.3E-34 7.9E-39 327.4 17.4 243 814-1071 19-274 (361)
169 2xir_A Vascular endothelial gr 100.0 6.7E-35 2.3E-39 326.7 12.5 253 807-1074 19-306 (316)
170 2w5a_A Serine/threonine-protei 100.0 4.9E-35 1.7E-39 321.4 11.2 246 814-1074 5-270 (279)
171 4fmz_A Internalin; leucine ric 100.0 1.4E-33 4.9E-38 320.3 23.6 306 93-445 40-345 (347)
172 3f3z_A Calcium/calmodulin-depe 100.0 2.1E-34 7E-39 316.1 16.0 241 814-1071 8-261 (277)
173 4e5w_A Tyrosine-protein kinase 100.0 1.7E-34 6E-39 321.0 15.6 251 815-1074 21-298 (302)
174 1opk_A P150, C-ABL, proto-onco 100.0 2.2E-34 7.4E-39 341.5 17.3 243 814-1074 219-474 (495)
175 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.3E-34 4.3E-39 325.9 14.6 255 812-1071 31-318 (329)
176 3op5_A Serine/threonine-protei 100.0 1.1E-34 3.7E-39 331.4 14.2 254 813-1074 33-325 (364)
177 3f66_A Hepatocyte growth facto 100.0 2.3E-34 8E-39 319.3 16.4 244 814-1074 24-287 (298)
178 1u59_A Tyrosine-protein kinase 100.0 2.4E-34 8.3E-39 317.2 16.4 243 815-1074 9-268 (287)
179 3gxj_A TGF-beta receptor type- 100.0 9.1E-36 3.1E-40 331.5 4.9 250 814-1074 2-293 (303)
180 3pls_A Macrophage-stimulating 100.0 3.7E-34 1.3E-38 317.7 17.9 243 816-1074 22-283 (298)
181 1rjb_A FL cytokine receptor; k 100.0 5E-35 1.7E-39 331.9 11.0 247 812-1074 42-330 (344)
182 3brb_A Proto-oncogene tyrosine 100.0 8.1E-35 2.8E-39 325.4 12.3 249 810-1074 29-304 (313)
183 4fmz_A Internalin; leucine ric 100.0 1.4E-33 4.7E-38 320.4 22.5 307 69-422 40-346 (347)
184 1cm8_A Phosphorylated MAP kina 100.0 3.6E-34 1.2E-38 326.6 17.6 249 814-1071 24-307 (367)
185 3kmu_A ILK, integrin-linked ki 100.0 2E-34 7E-39 315.0 15.0 241 814-1074 9-266 (271)
186 1nxk_A MAP kinase-activated pr 100.0 7.6E-34 2.6E-38 327.5 20.5 241 815-1071 61-321 (400)
187 3nyv_A Calmodulin-domain prote 100.0 1.5E-34 5.1E-39 343.5 14.9 245 814-1071 25-281 (484)
188 1p4o_A Insulin-like growth fac 100.0 1E-34 3.6E-39 326.0 12.7 249 809-1074 19-295 (322)
189 3n9x_A Phosphotransferase; mal 100.0 3.5E-34 1.2E-38 334.3 17.6 193 814-1010 25-253 (432)
190 2pvf_A Fibroblast growth facto 100.0 3.7E-34 1.3E-38 323.0 17.1 245 813-1074 33-314 (334)
191 4eut_A Serine/threonine-protei 100.0 2.6E-34 8.8E-39 331.8 16.2 255 814-1074 8-305 (396)
192 2xrw_A Mitogen-activated prote 100.0 3.3E-34 1.1E-38 328.0 16.9 253 814-1071 24-318 (371)
193 3bhy_A Death-associated protei 100.0 3E-34 1E-38 315.8 15.8 245 815-1071 5-265 (283)
194 3llt_A Serine/threonine kinase 100.0 1.7E-34 5.7E-39 329.7 14.1 255 806-1071 26-355 (360)
195 3c4z_A Rhodopsin kinase; Ser/T 100.0 2E-34 6.7E-39 340.9 15.2 246 814-1071 184-448 (543)
196 1byg_A CSK, protein (C-termina 100.0 2.3E-34 7.7E-39 315.9 14.6 237 814-1074 20-269 (278)
197 3lxp_A Non-receptor tyrosine-p 100.0 6.3E-34 2.1E-38 318.7 18.5 249 817-1074 33-306 (318)
198 1xbb_A Tyrosine-protein kinase 100.0 1.6E-34 5.6E-39 319.2 13.6 247 813-1074 14-275 (291)
199 4fcg_A Uncharacterized protein 100.0 8.3E-35 2.8E-39 326.2 11.3 288 2-326 27-314 (328)
200 4aaa_A Cyclin-dependent kinase 100.0 2.5E-34 8.5E-39 324.0 15.1 253 814-1071 24-306 (331)
201 3a7i_A MST3 kinase, serine/thr 100.0 6.3E-34 2.2E-38 316.6 18.1 242 814-1072 21-271 (303)
202 3kfa_A Tyrosine-protein kinase 100.0 7.7E-35 2.6E-39 321.5 10.7 245 812-1074 10-267 (288)
203 3t9t_A Tyrosine-protein kinase 100.0 2.5E-34 8.5E-39 313.6 14.4 241 814-1074 7-260 (267)
204 1u46_A ACK-1, activated CDC42 100.0 1.4E-34 4.7E-39 320.0 12.4 246 814-1074 17-280 (291)
205 2ozo_A Tyrosine-protein kinase 100.0 5.2E-34 1.8E-38 346.2 18.4 236 822-1074 343-594 (613)
206 2vgo_A Serine/threonine-protei 100.0 4.6E-34 1.6E-38 314.5 16.2 240 814-1071 13-262 (284)
207 2y7j_A Phosphorylase B kinase 100.0 4.3E-34 1.5E-38 325.9 16.5 253 806-1071 85-359 (365)
208 3byv_A Rhoptry kinase; malaria 100.0 4.2E-35 1.4E-39 336.4 8.2 235 814-1071 72-359 (377)
209 2fst_X Mitogen-activated prote 100.0 2.2E-34 7.6E-39 327.9 14.0 251 814-1071 28-311 (367)
210 3is5_A Calcium-dependent prote 100.0 9.9E-34 3.4E-38 311.8 18.7 241 814-1071 21-278 (285)
211 3qyz_A Mitogen-activated prote 100.0 4.3E-34 1.5E-38 326.4 16.3 253 814-1071 26-313 (364)
212 3com_A Serine/threonine-protei 100.0 1.7E-33 5.6E-38 315.0 20.6 241 813-1071 27-278 (314)
213 1mqb_A Ephrin type-A receptor 100.0 1.3E-33 4.3E-38 318.2 19.6 242 815-1074 44-305 (333)
214 1b6c_B TGF-B superfamily recep 100.0 1.2E-33 4.1E-38 320.3 19.2 255 809-1074 36-332 (342)
215 2v62_A Serine/threonine-protei 100.0 2.3E-34 7.7E-39 326.2 13.1 254 814-1074 36-324 (345)
216 2h8h_A Proto-oncogene tyrosine 100.0 3.8E-34 1.3E-38 342.6 15.7 243 813-1074 265-519 (535)
217 2acx_A G protein-coupled recep 100.0 3.3E-34 1.1E-38 339.4 14.7 245 814-1071 183-444 (576)
218 2vd5_A DMPK protein; serine/th 100.0 1.4E-34 4.7E-39 333.0 11.0 253 807-1071 53-327 (412)
219 3lm5_A Serine/threonine-protei 100.0 3.6E-34 1.2E-38 321.9 14.0 250 809-1071 22-287 (327)
220 3lxl_A Tyrosine-protein kinase 100.0 5.5E-34 1.9E-38 320.7 15.4 251 814-1074 22-299 (327)
221 3mwu_A Calmodulin-domain prote 100.0 4.1E-34 1.4E-38 339.5 15.1 243 814-1071 21-276 (486)
222 2yex_A Serine/threonine-protei 100.0 1.3E-33 4.4E-38 309.5 18.0 244 814-1071 6-261 (276)
223 4fl3_A Tyrosine-protein kinase 100.0 4.2E-34 1.4E-38 347.6 15.4 239 821-1074 375-627 (635)
224 4exu_A Mitogen-activated prote 100.0 9.2E-34 3.2E-38 324.3 17.0 251 814-1071 41-323 (371)
225 3rgf_A Cyclin-dependent kinase 100.0 3.7E-34 1.3E-38 331.9 13.8 190 815-1012 20-239 (405)
226 3eb0_A Putative uncharacterize 100.0 8.9E-34 3E-38 326.1 16.9 250 811-1071 3-321 (383)
227 2clq_A Mitogen-activated prote 100.0 2.8E-33 9.6E-38 310.1 20.2 241 815-1071 22-278 (295)
228 2wtk_C Serine/threonine-protei 100.0 1.7E-33 5.7E-38 313.6 18.4 243 814-1071 4-263 (305)
229 3g2f_A Bone morphogenetic prot 100.0 7.6E-34 2.6E-38 321.0 15.9 254 814-1074 12-314 (336)
230 2jam_A Calcium/calmodulin-depe 100.0 8.1E-34 2.8E-38 315.8 15.5 241 814-1071 8-261 (304)
231 3sv0_A Casein kinase I-like; t 100.0 7.1E-34 2.4E-38 333.3 15.8 248 814-1074 6-274 (483)
232 3fme_A Dual specificity mitoge 100.0 6.7E-34 2.3E-38 314.3 14.8 245 814-1071 6-266 (290)
233 3pg1_A Mitogen-activated prote 100.0 2.4E-34 8.3E-39 328.6 11.5 263 805-1071 12-316 (362)
234 2buj_A Serine/threonine-protei 100.0 9.6E-34 3.3E-38 317.4 16.2 246 814-1074 28-302 (317)
235 2r3i_A Cell division protein k 100.0 1.7E-33 5.8E-38 312.5 18.0 252 815-1071 3-283 (299)
236 2ac3_A MAP kinase-interacting 100.0 7.9E-34 2.7E-38 317.9 15.2 251 814-1071 11-295 (316)
237 3pfq_A PKC-B, PKC-beta, protei 100.0 8.6E-34 3E-38 347.3 16.9 243 813-1071 339-597 (674)
238 3q60_A ROP5B; pseudokinase, tr 100.0 4.3E-34 1.5E-38 327.3 13.4 249 814-1071 61-352 (371)
239 2jii_A Serine/threonine-protei 100.0 1.7E-34 6E-39 328.2 10.0 249 814-1074 41-332 (352)
240 2h6d_A 5'-AMP-activated protei 100.0 7.6E-34 2.6E-38 311.4 14.7 241 814-1071 10-261 (276)
241 3lij_A Calcium/calmodulin depe 100.0 9.7E-34 3.3E-38 336.9 16.7 243 814-1071 36-291 (494)
242 3q5i_A Protein kinase; CDPK, m 100.0 1E-33 3.4E-38 337.6 16.8 245 813-1071 34-301 (504)
243 1t4h_A Serine/threonine-protei 100.0 2.1E-33 7.2E-38 310.3 17.7 241 815-1071 26-282 (290)
244 3ll6_A Cyclin G-associated kin 100.0 8.2E-34 2.8E-38 320.9 14.8 241 814-1074 27-304 (337)
245 2ycf_A Serine/threonine-protei 100.0 5.9E-34 2E-38 319.7 13.4 247 814-1071 9-274 (322)
246 3coi_A Mitogen-activated prote 100.0 2.2E-33 7.6E-38 319.3 18.0 251 814-1071 23-305 (353)
247 4e7w_A Glycogen synthase kinas 100.0 1.9E-33 6.5E-38 323.9 17.4 247 814-1071 39-321 (394)
248 4fvq_A Tyrosine-protein kinase 100.0 7.4E-34 2.5E-38 313.8 13.3 237 814-1074 7-271 (289)
249 1wak_A Serine/threonine-protei 100.0 1.4E-33 4.7E-38 326.9 16.1 249 814-1071 36-391 (397)
250 2w1i_A JAK2; chromosomal rearr 100.0 1.1E-33 3.7E-38 318.0 14.7 251 814-1074 40-318 (326)
251 2b9h_A MAP kinase FUS3, mitoge 100.0 1.7E-33 5.9E-38 320.5 16.2 253 814-1071 10-305 (353)
252 2j7t_A Serine/threonine-protei 100.0 1.4E-33 4.8E-38 313.7 15.2 242 814-1071 18-275 (302)
253 2vwi_A Serine/threonine-protei 100.0 3.3E-34 1.1E-38 318.9 10.0 252 812-1071 12-287 (303)
254 1j1b_A Glycogen synthase kinas 100.0 3E-33 1E-37 324.9 18.3 246 815-1071 54-336 (420)
255 2x7f_A TRAF2 and NCK-interacti 100.0 1.5E-33 5.1E-38 317.2 15.1 244 811-1071 20-286 (326)
256 3e7e_A HBUB1, BUB1A, mitotic c 100.0 3.9E-33 1.3E-37 318.7 18.6 237 813-1074 63-335 (365)
257 3kvw_A DYRK2, dual specificity 100.0 1.8E-33 6.1E-38 327.6 16.0 190 814-1013 96-303 (429)
258 3an0_A Dual specificity mitoge 100.0 1.8E-33 6.2E-38 318.4 15.6 245 813-1071 49-310 (340)
259 1x8b_A WEE1HU, WEE1-like prote 100.0 3.4E-33 1.2E-37 308.3 16.8 237 813-1072 9-280 (289)
260 1phk_A Phosphorylase kinase; g 100.0 2.8E-33 9.5E-38 310.6 15.9 247 812-1071 14-283 (298)
261 2pml_X PFPK7, Ser/Thr protein 100.0 2.5E-33 8.7E-38 318.4 15.5 245 814-1071 30-322 (348)
262 2yfx_A Tyrosine-protein kinase 100.0 2.3E-33 7.7E-38 315.7 15.0 245 814-1074 29-300 (327)
263 3aln_A Dual specificity mitoge 100.0 2.4E-33 8.3E-38 315.5 15.2 245 814-1071 21-285 (327)
264 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-32 1.4E-36 305.8 25.2 272 146-443 55-330 (332)
265 3cek_A Dual specificity protei 100.0 3.2E-33 1.1E-37 312.4 15.8 245 812-1071 25-292 (313)
266 2a19_B Interferon-induced, dou 100.0 2.7E-33 9.1E-38 308.4 14.7 235 813-1074 9-270 (284)
267 2wei_A Calmodulin-domain prote 100.0 3.1E-33 1.1E-37 308.4 15.0 245 812-1071 19-276 (287)
268 3eqc_A Dual specificity mitoge 100.0 1.8E-33 6.1E-38 321.1 13.5 249 814-1071 32-324 (360)
269 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-32 1.2E-36 306.4 23.6 272 218-515 55-330 (332)
270 3nsz_A CK II alpha, casein kin 100.0 4.2E-33 1.4E-37 314.1 15.8 248 814-1071 35-319 (330)
271 3e3p_A Protein kinase, putativ 100.0 2.7E-33 9.2E-38 319.8 14.2 256 808-1071 16-314 (360)
272 1blx_A Cyclin-dependent kinase 100.0 3.8E-33 1.3E-37 313.8 15.2 255 812-1071 8-296 (326)
273 1fvr_A Tyrosine-protein kinase 100.0 3.1E-33 1E-37 314.6 14.3 242 814-1074 24-296 (327)
274 1zy4_A Serine/threonine-protei 100.0 5.8E-33 2E-37 308.8 16.3 241 814-1071 5-283 (303)
275 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-33 7.2E-38 313.0 12.6 252 73-351 50-306 (313)
276 2i6l_A Mitogen-activated prote 100.0 3.1E-33 1E-37 313.7 12.9 251 814-1071 10-305 (320)
277 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.3E-33 1.1E-37 313.3 13.1 245 812-1074 30-298 (319)
278 1vzo_A Ribosomal protein S6 ki 100.0 1.9E-33 6.6E-38 319.4 11.3 247 814-1072 53-322 (355)
279 2j0j_A Focal adhesion kinase 1 100.0 1.1E-32 3.7E-37 336.6 17.6 247 812-1074 387-647 (656)
280 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.8E-36 302.2 24.1 247 73-351 31-277 (330)
281 1z57_A Dual specificity protei 100.0 2.1E-32 7.3E-37 309.5 18.4 248 814-1071 13-328 (339)
282 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4.2E-36 301.8 24.5 296 97-444 31-330 (330)
283 3a99_A Proto-oncogene serine/t 100.0 2.1E-33 7.1E-38 314.7 9.7 237 812-1071 40-293 (320)
284 2dyl_A Dual specificity mitoge 100.0 2.9E-32 9.8E-37 305.5 18.9 244 814-1071 24-283 (318)
285 1q8y_A SR protein kinase; tran 100.0 1.3E-32 4.3E-37 315.9 15.6 249 814-1071 18-333 (373)
286 2iwi_A Serine/threonine-protei 100.0 1.2E-32 4E-37 307.7 13.4 239 810-1071 26-283 (312)
287 2vx3_A Dual specificity tyrosi 100.0 4.4E-32 1.5E-36 311.8 18.5 192 813-1012 52-261 (382)
288 2eu9_A Dual specificity protei 100.0 5E-32 1.7E-36 308.7 17.8 248 814-1071 18-333 (355)
289 3p23_A Serine/threonine-protei 100.0 3.2E-32 1.1E-36 316.5 16.0 239 814-1071 23-283 (432)
290 3fhr_A MAP kinase-activated pr 100.0 4.6E-32 1.6E-36 305.7 16.3 243 813-1071 26-287 (336)
291 2rio_A Serine/threonine-protei 100.0 4.3E-32 1.5E-36 316.7 16.5 239 816-1071 16-295 (434)
292 3dzo_A Rhoptry kinase domain; 100.0 1E-32 3.6E-37 319.6 11.1 235 814-1071 77-363 (413)
293 3qa8_A MGC80376 protein; kinas 100.0 2.7E-32 9.4E-37 325.6 13.8 251 814-1070 13-296 (676)
294 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-34 5.1E-39 342.2 -8.7 378 289-704 3-440 (461)
295 1z7x_W Ribonuclease inhibitor; 100.0 7.1E-35 2.4E-39 344.9 -12.8 390 265-687 3-447 (461)
296 3uqc_A Probable conserved tran 100.0 7.9E-31 2.7E-35 287.9 14.1 223 815-1074 31-261 (286)
297 2pzi_A Probable serine/threoni 100.0 1.2E-30 4E-35 322.2 16.3 230 814-1072 79-322 (681)
298 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.8E-35 296.0 14.2 277 37-327 30-315 (353)
299 2z66_A Variable lymphocyte rec 100.0 7.1E-30 2.4E-34 284.2 15.9 250 37-302 7-261 (306)
300 3m2w_A MAP kinase-activated pr 100.0 6.5E-30 2.2E-34 283.4 15.3 220 815-1071 17-256 (299)
301 3ogk_B Coronatine-insensitive 100.0 7.3E-33 2.5E-37 338.7 -9.4 448 37-514 41-547 (592)
302 2vuw_A Serine/threonine-protei 100.0 1.4E-30 4.7E-35 294.0 6.0 238 814-1070 19-329 (336)
303 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 5.7E-34 287.2 13.6 275 243-520 33-316 (353)
304 2z66_A Variable lymphocyte rec 100.0 3.3E-29 1.1E-33 278.8 15.2 231 289-520 28-263 (306)
305 3zyi_A Leucine-rich repeat-con 100.0 4.3E-28 1.5E-32 285.2 21.3 228 73-326 75-303 (452)
306 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-28 9.8E-33 268.1 18.4 255 51-334 14-269 (285)
307 3ogk_B Coronatine-insensitive 100.0 6.2E-31 2.1E-35 321.6 -4.6 422 258-699 66-546 (592)
308 3zyi_A Leucine-rich repeat-con 100.0 1E-27 3.5E-32 282.0 21.7 248 99-351 56-304 (452)
309 1wwl_A Monocyte differentiatio 100.0 1E-29 3.5E-34 283.3 3.8 247 70-326 40-309 (312)
310 1ozn_A Reticulon 4 receptor; N 100.0 7.4E-28 2.5E-32 264.8 18.5 236 218-454 33-269 (285)
311 3zyj_A Leucine-rich repeat-con 100.0 1.9E-27 6.4E-32 278.7 22.9 227 98-326 65-292 (440)
312 3zyj_A Leucine-rich repeat-con 100.0 1.8E-27 6.1E-32 278.9 21.1 247 50-302 45-292 (440)
313 4fcg_A Uncharacterized protein 99.9 1.1E-27 3.8E-32 268.2 18.0 235 96-350 80-314 (328)
314 1wwl_A Monocyte differentiatio 99.9 1.4E-28 4.7E-33 274.1 4.2 249 92-350 38-309 (312)
315 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-28 5.3E-33 274.4 3.7 263 267-543 12-277 (317)
316 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-28 5.7E-33 274.2 3.1 256 148-441 13-270 (317)
317 2o6q_A Variable lymphocyte rec 99.9 4.7E-26 1.6E-30 248.0 20.4 215 37-255 5-219 (270)
318 3g06_A SSPH2 (leucine-rich rep 99.9 1E-25 3.5E-30 271.2 24.0 268 74-433 41-308 (622)
319 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-25 4.5E-30 270.3 24.7 269 97-457 40-308 (622)
320 3oja_A Leucine-rich immune mol 99.9 3E-27 1E-31 279.3 6.8 235 409-699 34-270 (487)
321 3oja_A Leucine-rich immune mol 99.9 8E-27 2.7E-31 275.7 7.8 237 287-537 32-270 (487)
322 2p1m_B Transport inhibitor res 99.9 1.1E-29 3.9E-34 310.5 -21.5 182 38-225 36-243 (594)
323 2p1m_B Transport inhibitor res 99.9 2.4E-28 8.1E-33 298.8 -11.7 432 235-701 60-541 (594)
324 2z62_A TOLL-like receptor 4, v 99.9 1.7E-24 5.8E-29 236.7 19.1 204 74-302 29-237 (276)
325 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5E-29 237.3 17.8 204 123-327 30-238 (276)
326 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.6E-28 227.3 21.5 203 74-303 17-219 (270)
327 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.7E-29 234.1 14.3 225 313-550 19-243 (272)
328 3rfs_A Internalin B, repeat mo 99.9 3.2E-24 1.1E-28 233.8 13.9 209 118-337 38-246 (272)
329 1p9a_G Platelet glycoprotein I 99.9 5.2E-23 1.8E-27 225.9 18.6 203 69-302 6-208 (290)
330 3m19_A Variable lymphocyte rec 99.9 4.8E-23 1.6E-27 221.6 17.8 190 36-255 4-193 (251)
331 1p9a_G Platelet glycoprotein I 99.9 5.8E-23 2E-27 225.5 18.5 203 118-327 7-209 (290)
332 4glp_A Monocyte differentiatio 99.9 1.7E-23 5.7E-28 232.8 14.2 201 121-327 91-308 (310)
333 3goz_A Leucine-rich repeat-con 99.9 6.2E-25 2.1E-29 250.1 0.8 260 390-682 3-299 (362)
334 2ast_B S-phase kinase-associat 99.9 4.3E-25 1.5E-29 249.2 -1.0 233 97-334 70-314 (336)
335 3goz_A Leucine-rich repeat-con 99.9 3.1E-24 1.1E-28 244.3 4.0 262 413-707 2-300 (362)
336 2xwt_C Thyrotropin receptor; s 99.9 9.2E-23 3.1E-27 217.7 14.1 178 290-470 32-218 (239)
337 2ca6_A RAN GTPase-activating p 99.9 9.6E-25 3.3E-29 251.2 -2.4 95 590-684 211-320 (386)
338 2xwt_C Thyrotropin receptor; s 99.9 1.2E-22 4E-27 216.9 13.8 177 147-326 33-218 (239)
339 4azs_A Methyltransferase WBDD; 99.9 5E-24 1.7E-28 255.0 2.0 180 822-1008 241-437 (569)
340 2ca6_A RAN GTPase-activating p 99.9 4.3E-24 1.5E-28 245.7 0.1 269 412-707 12-319 (386)
341 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.1E-27 225.2 11.6 226 72-303 63-308 (310)
342 1h6u_A Internalin H; cell adhe 99.9 4.2E-22 1.4E-26 220.9 14.3 170 71-254 39-208 (308)
343 2o6s_A Variable lymphocyte rec 99.9 2.2E-21 7.6E-26 202.1 17.3 183 37-241 7-189 (208)
344 3m19_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 207.0 18.2 180 98-304 15-194 (251)
345 4ay9_X Follicle-stimulating ho 99.9 2.3E-21 7.8E-26 219.4 17.3 240 76-346 12-255 (350)
346 4ay9_X Follicle-stimulating ho 99.9 3.3E-21 1.1E-25 218.1 18.5 238 124-369 12-254 (350)
347 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.1E-26 217.2 14.4 212 75-304 21-232 (308)
348 2ast_B S-phase kinase-associat 99.9 4.2E-23 1.4E-27 232.8 2.0 249 291-547 49-311 (336)
349 3cvr_A Invasion plasmid antige 99.8 3.9E-21 1.3E-25 228.3 9.7 198 38-289 49-254 (571)
350 2o6s_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 191.5 17.2 181 76-290 10-190 (208)
351 3en9_A Glycoprotease, O-sialog 99.8 3.7E-21 1.3E-25 228.9 7.5 184 818-1010 339-539 (540)
352 3cvr_A Invasion plasmid antige 99.8 5.7E-20 1.9E-24 218.4 13.4 189 98-314 60-255 (571)
353 4b8c_D Glucose-repressible alc 99.8 1.6E-20 5.5E-25 231.8 4.0 204 2-237 132-336 (727)
354 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 183.8 17.0 83 37-134 19-101 (229)
355 1dce_A Protein (RAB geranylger 99.8 2.2E-21 7.5E-26 232.1 -5.0 216 430-697 346-566 (567)
356 1zar_A RIO2 kinase; serine kin 99.8 1.1E-19 3.8E-24 197.9 8.2 167 808-994 83-274 (282)
357 1m9s_A Internalin B; cell inva 99.8 3.1E-19 1.1E-23 214.7 12.2 190 73-278 21-210 (605)
358 1h6t_A Internalin B; cell adhe 99.8 4.3E-19 1.5E-23 194.8 11.5 149 94-254 43-191 (291)
359 1m9s_A Internalin B; cell inva 99.8 3.2E-19 1.1E-23 214.5 11.4 189 290-494 22-210 (605)
360 1h6t_A Internalin B; cell adhe 99.8 2.1E-19 7.3E-24 197.2 8.9 192 96-327 23-214 (291)
361 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.8E-23 180.2 15.2 131 73-203 32-162 (220)
362 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.4E-23 197.6 12.5 156 75-254 41-202 (361)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 179.5 14.0 133 74-206 33-166 (220)
364 2v9t_B SLIT homolog 2 protein 99.8 2.8E-18 9.7E-23 179.8 13.5 132 386-517 33-164 (220)
365 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.7E-23 196.7 12.2 175 364-541 21-201 (361)
366 2v70_A SLIT-2, SLIT homolog 2 99.8 4.8E-18 1.6E-22 178.1 14.6 153 76-255 14-167 (220)
367 1dce_A Protein (RAB geranylger 99.7 9.1E-20 3.1E-24 218.1 0.3 128 572-710 424-552 (567)
368 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.6E-22 175.3 16.4 152 76-255 22-173 (229)
369 3sb4_A Hypothetical leucine ri 99.7 9.5E-19 3.3E-23 196.1 6.7 261 216-511 48-327 (329)
370 1xeu_A Internalin C; cellular 99.7 2.4E-18 8.3E-23 185.7 8.4 169 313-496 19-187 (263)
371 3sb4_A Hypothetical leucine ri 99.7 7.4E-19 2.5E-23 197.0 4.0 123 72-202 24-157 (329)
372 1xeu_A Internalin C; cellular 99.7 2.8E-18 9.6E-23 185.2 8.2 170 95-279 17-186 (263)
373 4b8c_D Glucose-repressible alc 99.7 1.7E-18 5.9E-23 213.7 6.7 232 337-609 173-405 (727)
374 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.6E-22 170.5 10.1 152 94-253 41-193 (197)
375 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.4E-22 170.6 9.8 155 69-231 40-195 (197)
376 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.7E-22 168.6 7.4 131 550-683 11-142 (192)
377 4fs7_A Uncharacterized protein 99.7 1.1E-15 3.6E-20 175.8 19.5 314 158-488 60-373 (394)
378 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.2E-20 174.2 18.3 270 145-446 113-383 (401)
379 1w8a_A SLIT protein; signaling 99.7 2E-16 6.7E-21 162.0 10.5 110 410-519 30-140 (192)
380 4fdw_A Leucine rich hypothetic 99.7 8.7E-16 3E-20 175.5 16.9 265 169-470 113-383 (401)
381 2ell_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 156.8 11.0 134 71-206 22-160 (168)
382 4fs7_A Uncharacterized protein 99.6 1.6E-15 5.6E-20 174.2 17.8 317 109-466 59-375 (394)
383 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 152.4 10.7 132 121-254 24-160 (168)
384 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4.2E-20 156.0 9.9 128 577-708 16-143 (193)
385 2je0_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 151.3 6.6 128 72-201 16-148 (149)
386 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 149.8 8.0 127 572-700 18-149 (149)
387 2o6r_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 148.4 14.2 132 37-183 7-138 (177)
388 2wfh_A SLIT homolog 2 protein 99.6 5.9E-15 2E-19 150.9 12.9 62 74-136 32-93 (193)
389 1zth_A RIO1 serine protein kin 99.6 1.3E-15 4.4E-20 163.8 7.8 139 814-960 46-220 (258)
390 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.6E-19 145.2 13.6 128 76-206 10-137 (177)
391 1ds9_A Outer arm dynein; leuci 99.5 4.7E-16 1.6E-20 160.2 -1.2 135 563-704 40-185 (198)
392 1ds9_A Outer arm dynein; leuci 99.5 9.4E-16 3.2E-20 157.9 -4.3 132 380-518 43-185 (198)
393 4gt6_A Cell surface protein; l 99.5 9.8E-13 3.3E-17 151.0 19.9 334 159-517 53-390 (394)
394 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 143.1 6.8 132 69-205 15-152 (176)
395 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.3E-19 143.9 5.6 58 410-469 43-100 (176)
396 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 138.4 9.6 110 597-709 11-120 (170)
397 2r9u_A Variable lymphocyte rec 99.4 2.8E-13 9.6E-18 135.8 9.5 108 598-708 15-122 (174)
398 4gt6_A Cell surface protein; l 99.4 5.6E-12 1.9E-16 144.7 19.5 332 184-540 54-389 (394)
399 4gyi_A RIO2 kinase; protein ki 99.4 2.8E-13 9.6E-18 150.5 8.3 146 810-961 90-267 (397)
400 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6E-17 129.5 11.9 102 78-182 14-115 (170)
401 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.7E-17 128.4 12.0 103 77-182 16-118 (174)
402 3un9_A NLR family member X1; l 99.3 5.3E-13 1.8E-17 150.9 -0.1 160 545-704 70-252 (372)
403 3un9_A NLR family member X1; l 99.2 6.5E-13 2.2E-17 150.2 -1.3 173 480-690 71-262 (372)
404 4h09_A Hypothetical leucine ri 99.2 3.9E-10 1.3E-14 128.6 21.4 122 355-480 234-355 (379)
405 4h09_A Hypothetical leucine ri 99.2 2.6E-10 9E-15 130.1 19.8 148 353-505 209-356 (379)
406 2ifg_A High affinity nerve gro 99.2 1.5E-11 5.3E-16 138.5 8.8 103 576-681 13-117 (347)
407 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 134.6 9.6 103 389-494 12-116 (347)
408 2ra8_A Uncharacterized protein 98.9 2.3E-10 7.9E-15 128.0 -0.2 103 48-153 107-227 (362)
409 2ra8_A Uncharacterized protein 98.8 2.6E-10 9E-15 127.5 -0.4 58 141-201 168-227 (362)
410 3rw6_A Nuclear RNA export fact 98.8 3.3E-11 1.1E-15 127.6 -8.5 143 37-183 78-234 (267)
411 3rw6_A Nuclear RNA export fact 98.6 1.2E-08 4.2E-13 107.9 4.3 120 576-698 121-258 (267)
412 1io0_A Tropomodulin; LRR prote 98.5 3.9E-08 1.3E-12 99.2 3.2 115 590-704 31-164 (185)
413 1nd4_A Aminoglycoside 3'-phosp 98.5 4.6E-08 1.6E-12 105.0 3.6 136 815-958 20-214 (264)
414 3tm0_A Aminoglycoside 3'-phosp 98.5 1.7E-07 6E-12 100.5 7.8 141 811-957 10-212 (263)
415 1io0_A Tropomodulin; LRR prote 98.4 4.5E-08 1.6E-12 98.7 0.5 92 589-680 59-164 (185)
416 3dxp_A Putative acyl-COA dehyd 98.4 8.8E-07 3E-11 99.8 10.4 136 820-958 43-248 (359)
417 3sg8_A APH(2'')-ID; antibiotic 98.2 8.9E-07 3.1E-11 97.2 5.4 178 820-1009 25-287 (304)
418 3r70_A Aminoglycoside phosphot 97.8 0.00011 3.6E-09 81.1 11.9 133 816-960 38-239 (320)
419 3e4g_A ATP synthase subunit S, 97.6 2E-05 7E-10 77.0 3.3 82 362-443 62-149 (176)
420 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.5E-10 77.7 1.7 83 385-467 61-149 (176)
421 3d1u_A Putative fructosamine-3 97.6 0.00029 9.9E-09 76.0 11.6 62 819-883 19-83 (288)
422 1pgv_A TMD-1, tropomodulin TMD 97.5 6.4E-05 2.2E-09 74.9 4.4 109 593-701 39-167 (197)
423 3tdw_A Gentamicin resistance p 97.3 0.0011 3.8E-08 72.3 12.1 131 820-959 24-225 (306)
424 3ovc_A Hygromycin-B 4-O-kinase 97.3 0.00067 2.3E-08 75.9 10.2 58 819-885 45-104 (362)
425 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00021 7.2E-09 71.2 4.0 91 590-680 65-170 (197)
426 3ats_A Putative uncharacterize 97.0 0.0007 2.4E-08 75.8 6.3 66 821-886 26-102 (357)
427 4gkh_A Aminoglycoside 3'-phosp 97.0 0.00098 3.3E-08 71.3 7.1 130 821-958 30-223 (272)
428 3f7w_A Putative fructosamine-3 96.8 0.0022 7.5E-08 69.3 8.8 65 815-882 15-82 (288)
429 3rfe_A Platelet glycoprotein I 96.5 0.0026 9E-08 59.1 5.6 58 598-657 11-69 (130)
430 2olc_A MTR kinase, methylthior 96.4 0.0048 1.6E-07 70.0 8.1 64 820-883 35-106 (397)
431 3rfe_A Platelet glycoprotein I 96.3 0.0035 1.2E-07 58.3 5.1 38 669-706 33-70 (130)
432 3dxq_A Choline/ethanolamine ki 95.9 0.012 4E-07 63.9 7.6 127 820-959 23-203 (301)
433 2pyw_A Uncharacterized protein 95.7 0.045 1.5E-06 62.4 12.0 77 928-1006 232-313 (420)
434 3jr1_A Putative fructosamine-3 95.7 0.036 1.2E-06 60.1 10.4 59 820-885 41-102 (312)
435 2q83_A YTAA protein; 2635576, 95.6 0.031 1.1E-06 61.7 9.7 44 915-958 199-252 (346)
436 2yle_A Protein spire homolog 1 94.8 0.098 3.3E-06 52.2 9.2 93 900-1008 43-135 (229)
437 1nw1_A Choline kinase (49.2 KD 94.7 0.072 2.5E-06 60.7 9.5 58 821-883 79-145 (429)
438 3csv_A Aminoglycoside phosphot 94.0 0.075 2.6E-06 58.4 7.4 33 928-960 183-219 (333)
439 2qg7_A Ethanolamine kinase PV0 94.0 0.18 6.3E-06 57.6 10.7 59 821-883 114-174 (458)
440 1zyl_A Hypothetical protein YI 93.9 0.16 5.5E-06 55.5 9.8 63 805-872 11-78 (328)
441 2ppq_A HSK, HK, homoserine kin 93.8 0.21 7.1E-06 54.4 10.3 44 915-958 170-217 (322)
442 3feg_A Choline/ethanolamine ki 93.6 0.12 4.2E-06 57.4 8.0 132 821-958 56-254 (379)
443 3i1a_A Spectinomycin phosphotr 91.6 0.16 5.5E-06 55.8 5.6 32 928-959 206-237 (339)
444 3c5i_A Choline kinase; choline 91.5 0.14 4.8E-06 57.0 5.1 30 928-958 212-241 (369)
445 3f2s_A CK, chetk-alpha, cholin 89.9 0.5 1.7E-05 52.7 7.6 31 928-958 244-280 (401)
446 2ks1_B Epidermal growth factor 85.0 0.43 1.5E-05 34.0 2.0 23 758-780 18-40 (44)
447 2l2t_A Receptor tyrosine-prote 84.7 0.4 1.4E-05 34.0 1.7 21 760-780 19-39 (44)
448 2jwa_A Receptor tyrosine-prote 79.0 1 3.5E-05 31.9 2.0 24 756-779 16-39 (44)
449 3mes_A Choline kinase; malaria 78.5 1.9 6.5E-05 48.5 5.4 30 928-958 262-291 (424)
450 3cxl_A N-chimerin; SH2, RHO-GA 73.5 0.41 1.4E-05 54.9 -1.9 62 819-884 146-214 (463)
451 3g15_A CK, chetk-alpha, cholin 70.7 5.9 0.0002 44.3 6.9 30 929-958 245-280 (401)
452 4ann_A ESSB; membrane protein, 69.5 3.1 0.00011 41.5 3.7 84 900-1010 75-158 (215)
453 4ano_A ESSB; membrane protein, 61.9 4.9 0.00017 40.2 3.4 83 901-1010 80-163 (219)
454 2lz0_A Uncharacterized protein 55.8 22 0.00075 30.5 6.2 43 278-321 9-51 (100)
455 2lz0_A Uncharacterized protein 51.5 35 0.0012 29.2 6.8 42 184-226 11-52 (100)
456 2k9y_A Ephrin type-A receptor 51.4 6.4 0.00022 27.5 1.6 7 771-777 33-39 (41)
457 2k1k_A Ephrin type-A receptor 45.8 13 0.00043 25.6 2.3 7 771-777 31-37 (38)
458 3ox7_P MH027; urokinase-type p 41.8 8 0.00027 21.9 0.7 7 37-43 8-14 (23)
459 1iij_A ERBB-2 receptor protein 34.7 7.3 0.00025 26.1 -0.2 8 771-778 27-34 (35)
460 2l8s_A Integrin alpha-1; trans 23.0 28 0.00095 25.9 1.0 12 750-761 9-20 (54)
461 2ks1_B Epidermal growth factor 21.3 32 0.0011 24.5 1.0 28 753-780 16-43 (44)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-93 Score=896.06 Aligned_cols=721 Identities=32% Similarity=0.456 Sum_probs=648.1
Q ss_pred hhHHHHHHHHHhccCCCCCCCcCCCCcCCCCCCCCCccceEEeCCCCceeEEEecccccccc---cCCcccCCCCCccEE
Q 042958 2 EEAHALLRWKTSLQNHNNGSLLSSWTLNNVTKTSPCAWVGIHCNRGGRVNSINLTSIGLKGM---LHDFSFSSFPHLAYL 78 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~~~l~sw~~~~~~~~~~c~w~gv~C~~~~~v~~l~l~~~~l~g~---~~~~~~~~l~~L~~L 78 (1075)
+|++|||+||+++.|+ . .+++|+. ++++|.|.||+|+ .+||++++|++.++.|. ++++ +.+|++|+.+
T Consensus 12 ~~~~all~~k~~~~~~-~--~l~~W~~----~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l 82 (768)
T 3rgz_A 12 REIHQLISFKDVLPDK-N--LLPDWSS----NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESL 82 (768)
T ss_dssp HHHHHHHHHHTTCSCT-T--SSTTCCT----TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEE
T ss_pred HHHHHHHHHHhhCCCc-c--cccCCCC----CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh-HhccCccccc
Confidence 5899999999999854 3 7999972 3345999999999 79999999999999998 7765 8999999999
Q ss_pred EccCCCccCCCCccccccCCCceeecccCcccccCCC--CCCCCCCCcEEEccCcccCCCCCccc-cccCCcceeecccc
Q 042958 79 DLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPP--EIGHLSYLKTLQLFENQLNGSIPYEI-GRLSSLNYLALYSN 155 (1075)
Q Consensus 79 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n 155 (1075)
+++.+.+. .+|..++.+++|++|||++|.++|.+|. .++++++|++|+|++|.+++.+|..+ ..+++|++|++++|
T Consensus 83 ~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 83 FLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp ECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 99999876 4778999999999999999999999998 99999999999999999999988876 88999999999999
Q ss_pred cccCCCCCC---CCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC
Q 042958 156 YLEDLIPPS---LGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 156 ~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
.+++..+.. +.++++|++|++++|.+++..+ +..+++|++|+|++|++++.+|. ++++++|++|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 999988877 8999999999999999998766 48899999999999999987877 99999999999999999999
Q ss_pred CcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCC-ccCcEEEccCCCCCCCcCCCCCc
Q 042958 233 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNL-RSLSMLNLGYNKLNGIIPHSLGN 311 (1075)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 311 (1075)
+|..+..+++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..|++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 9999999999999999999999877765 88999999999999999899888775 99999999999999999999999
Q ss_pred cccccceecccccccCCCCcc-cccccccccccccCCcccccCCCcCCCCC-CcceeeccccccCCCCccccCC--Cccc
Q 042958 312 LTNLATLYIHNNSLSGSIPSE-IGNLRSLSNLGLSGNKLSGSIPPSLGYLS-NLATLYLYSNSLFDSIPSELGN--LRSL 387 (1075)
Q Consensus 312 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~--l~~L 387 (1075)
+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.+|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 999999999999999777765 99999999999999999999999999887 9999999999999888888877 8899
Q ss_pred ceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCC
Q 042958 388 SMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDN 467 (1075)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 467 (1075)
++|++++|++++.+|..+..+++|++|++++|++++.+|..|+++++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCC
Q 042958 468 SLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPH 547 (1075)
Q Consensus 468 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 547 (1075)
++++.+|..++.+++|++|++++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|++++|+++|.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccc------cccCC-CccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCccccccccccc
Q 042958 548 SLGV------LDLSS-NHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVK 620 (1075)
Q Consensus 548 ~l~~------L~Ls~-N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 620 (1075)
.+.. +++.. +.+............. ..-.--.+.+..+..+..++.++.++++.|.++|.+|..|+.+++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECH---GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC---SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred HHhcccchhhhhcccccccccccccccccccc---ccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 5432 22211 1111000000000000 000001244566677788889999999999999999999999999
Q ss_pred ceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhcccccccEEeecC
Q 042958 621 LHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLLRIDISY 700 (1075)
Q Consensus 621 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~ 700 (1075)
|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.||||+|+++|.+|..+..++.|+.||+|+
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCccccccccccccCCccccCCCCCCCccccccc
Q 042958 701 NELQGPIPNSIAFRDAPIEALQGNKGLCGDVKGLPSCKTLKS 742 (1075)
Q Consensus 701 N~~~~~~p~~~~~~~~~~~~~~~n~~lcg~~~~l~~c~~~~~ 742 (1075)
|+++|.+|...+|.+++..+|.||+++||.+. ++|.....
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~~ 753 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSNA 753 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC-
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCcc
Confidence 99999999999999999999999999999764 47875443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-77 Score=749.56 Aligned_cols=643 Identities=32% Similarity=0.448 Sum_probs=579.7
Q ss_pred EecccccccccC-CcccCCCCCccEEEccCCCccCCCCc--cccccCCCceeecccCcccccCCCCC-CCCCCCcEEEcc
Q 042958 54 NLTSIGLKGMLH-DFSFSSFPHLAYLDLWHNQLYGNIPP--QIGNISRLKYLDLSSNLFFGTIPPEI-GHLSYLKTLQLF 129 (1075)
Q Consensus 54 ~l~~~~l~g~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls 129 (1075)
++.++...|..+ +..++.+++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|||+
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 333333444433 23499999999999999999999999 99999999999999999999998876 899999999999
Q ss_pred CcccCCCCCcc---ccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccc
Q 042958 130 ENQLNGSIPYE---IGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFS 206 (1075)
Q Consensus 130 ~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 206 (1075)
+|++++..|.. +.++++|++|++++|.+.+..+ +..+++|++|+|++|++++.+|. |+++++|++|+|++|+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 99999888877 8899999999999999998766 48999999999999999998887 999999999999999999
Q ss_pred cccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccc-ccccccccccccCcCCCCccc
Q 042958 207 GSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNL-TNLATLYLYENSLSGSIPSEF 285 (1075)
Q Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~ 285 (1075)
+.+|..+.++++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..|
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 999999999999999999999999877765 89999999999999999999988875 999999999999999999999
Q ss_pred CCCccCcEEEccCCCCCCCcCCC-CCccccccceecccccccCCCCccccccc-ccccccccCCcccccCCCcCCC--CC
Q 042958 286 GNLRSLSMLNLGYNKLNGIIPHS-LGNLTNLATLYIHNNSLSGSIPSEIGNLR-SLSNLGLSGNKLSGSIPPSLGY--LS 361 (1075)
Q Consensus 286 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~l~~--l~ 361 (1075)
+.+++|++|++++|.+.+.+|.. |..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 99999999999999998777755 99999999999999999999999999998 9999999999999999988887 88
Q ss_pred CcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceeccc
Q 042958 362 NLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLG 441 (1075)
Q Consensus 362 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 441 (1075)
+|++|++++|.+.+.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|.+++.+|..|..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCC
Q 042958 442 YNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSI 521 (1075)
Q Consensus 442 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 521 (1075)
+|++++.+|..|+++++|++|+|++|++++.+|.+++.+++|+.|+|++|++++.+|..++++++|+.|++++|++++.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccccccccccccccccCC-ccc-ccccCC--CccccccchhhhhhhHhHHHhhcccccccccccccCccccc
Q 042958 522 PSELGNLRSLSMLSFAYNKLSGSIPH-SLG-VLDLSS--NHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQL 597 (1075)
Q Consensus 522 ~~~l~~l~~L~~L~l~~N~l~~~~p~-~l~-~L~Ls~--N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L 597 (1075)
|..+.....+..+++..+.-...+.. ... ...... -.+.+..+..+..+..+..++++.|.++|..|..+..++.|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 99998887777666554221000000 000 000000 13455677788888888888999999999999999999999
Q ss_pred ceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCC
Q 042958 598 EHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHN 677 (1075)
Q Consensus 598 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N 677 (1075)
+.||||+|+++|.+|.+|+.+++|++|+|++|+++|.+|..++.+++|++||||+|+++|.+|..+..+++|+.||+|+|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhhcccccccEEeecCCc
Q 042958 678 SLVGLIPSCFEKMHGLLRIDISYNE 702 (1075)
Q Consensus 678 ~l~~~~p~~~~~~~~l~~l~~s~N~ 702 (1075)
+|+|.+|.. ..+.++....+.+|+
T Consensus 715 ~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 715 NLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp EEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred cccccCCCc-hhhccCCHHHhcCCc
Confidence 999999975 233444455666776
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-64 Score=631.35 Aligned_cols=576 Identities=27% Similarity=0.292 Sum_probs=301.9
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
+++++|||++|++++..+..++++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56777777777777665566777777777777777777666666777777777777777776444445666666666666
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCc--CCCCcCceeccccCCC
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLG--NLTNLATLYLHNNSLF 230 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~ 230 (1075)
++|.+.++.+..|+++++|++|++++|.+++..+..|+++++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 66666665555666666666666666666655555555666666666666665544444332 3355555555555555
Q ss_pred CCCcccccCCCCCCeEeccCCCCCCccCCCCc---ccccccccccccccCcCCCCcccCCCcc--CcEEEccCCCCCCCc
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLSGSIPHSLG---NLTNLATLYLYENSLSGSIPSEFGNLRS--LSMLNLGYNKLNGII 305 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~ 305 (1075)
+..|..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+++..|..|..++. |+.|++++|+++++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 55555555555555555555554421111000 1134445555555554444444444433 555555555444444
Q ss_pred CCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCcc----cc
Q 042958 306 PHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPS----EL 381 (1075)
Q Consensus 306 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~----~~ 381 (1075)
|..|+.+++|++|++++|.+.+..|..|.++++|+.|++++|...+.++. ..+|. .|
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-------------------~~lp~i~~~~~ 325 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-------------------ASLPKIDDFSF 325 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------------------------CCEECTTTT
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc-------------------ccccccChhhc
Confidence 44444444455555554444444444444444444444444332211000 01111 34
Q ss_pred CCCcccceeeeccccccccCChhhccCCCCCeEEeeccccc--cccccccccc--cccceecccccccccCCCCCCcccc
Q 042958 382 GNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLS--GSIPSEFGNL--RSLSTLSLGYNKLSGSIPHSLGNLT 457 (1075)
Q Consensus 382 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~ 457 (1075)
..+++|++|++++|++.+..+..|.++++|++|++++|.+. ......|..+ ++|+.|++++|++++..|.+|..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 44444555555555554444444444555555555544422 1112222222 2444444444444444444444444
Q ss_pred ccccccccCCccccCCC-ccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCC--CCCCccccCccccccc
Q 042958 458 NLDALYLYDNSLSGSIP-GEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLF--DSIPSELGNLRSLSML 534 (1075)
Q Consensus 458 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L 534 (1075)
+|++|+|++|++++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 44444444444443333 34444444444444444444444444444444444444444443 2233333333333322
Q ss_pred cccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcc---
Q 042958 535 SFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSI--- 611 (1075)
Q Consensus 535 ~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 611 (1075)
+++ +|++++..+..|..+++|++|+|++|++++..
T Consensus 486 ~Ls------------------------------------------~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 486 DLS------------------------------------------NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECC------------------------------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred ECC------------------------------------------CCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 222 22222233333444455555555555554321
Q ss_pred -----cccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhh
Q 042958 612 -----PKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSC 686 (1075)
Q Consensus 612 -----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~ 686 (1075)
+..|..+++|++|+|++|+++...+..|..+++|++|||++|+|++..+..+..+++|+.|++++|+|++..|..
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 122555666666666666666444445666666666666666666655555666677777777777777777766
Q ss_pred hc-ccccccEEeecCCccCCCCCC
Q 042958 687 FE-KMHGLLRIDISYNELQGPIPN 709 (1075)
Q Consensus 687 ~~-~~~~l~~l~~s~N~~~~~~p~ 709 (1075)
|. .+++|+.+++++|++.|.++.
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hcccccccCEEEccCCCcccCCcc
Confidence 66 667777777777777777664
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-64 Score=629.20 Aligned_cols=591 Identities=24% Similarity=0.262 Sum_probs=447.1
Q ss_pred CccceEEeCC----------CCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeeccc
Q 042958 37 CAWVGIHCNR----------GGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSS 106 (1075)
Q Consensus 37 c~w~gv~C~~----------~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 106 (1075)
|.|.-|.|+. ..+++.++++++++.+..+. .|+++++|++|||++|.+++..|..++++++|++|+|++
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 5566666653 14799999999999886544 499999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCC
Q 042958 107 NLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIP 186 (1075)
Q Consensus 107 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 186 (1075)
|.+++..+..|+++++|++|+|++|++++..|..|+.+++|++|++++|.+.+..+..++++++|++|++++|.+++..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 99996555679999999999999999998777899999999999999999999999999999999999999999998888
Q ss_pred cccc--CccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCccccc---CCCCCCeEeccCCCCCCccCCCC
Q 042958 187 SEFG--NLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELG---NLRSLSMLSLGYNKLSGSIPHSL 261 (1075)
Q Consensus 187 ~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~ 261 (1075)
..+. .+++|++|++++|++++..|..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+++..|..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 7665 558999999999999999999999999999999999987533222211 35899999999999999999999
Q ss_pred ccccc--ccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCC-----C----
Q 042958 262 GNLTN--LATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSI-----P---- 330 (1075)
Q Consensus 262 ~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~---- 330 (1075)
.+++. |++|++++|.+++..|..|..+++|+.|++++|.+.+..|.+|.++++|++|++++|...+.+ |
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 98876 999999999999888899999999999999999999999999999999999999987655322 1
Q ss_pred cccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccC--
Q 042958 331 SEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNL-- 408 (1075)
Q Consensus 331 ~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-- 408 (1075)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+... ......|..+
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~----------------------~l~~~~f~~~~~ 380 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR----------------------TLTNETFVSLAH 380 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC----------------------EECTTTTGGGTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh----------------------hcchhhhccccc
Confidence 1444455555555555555544444455555555555555443211 1111222222
Q ss_pred CCCCeEEeeccccccccccccccccccceecccccccccCCC-CCCccccccccccccCCccccCCCccccCcCCCCEEe
Q 042958 409 TNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIP-HSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLA 487 (1075)
Q Consensus 409 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 487 (1075)
++|+.|++++|+++++.|..|..+++|++|++++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 355666666666655555556666666666666666654433 4555666666666666666655566666666666666
Q ss_pred CCCCccc--CCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccch
Q 042958 488 LNNNKLS--GSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPT 565 (1075)
Q Consensus 488 L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~ 565 (1075)
+++|.++ +..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++++. .+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~------------------~~~ 522 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL------------------WKH 522 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG------------------GST
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc------------------chh
Confidence 6666654 34566666666666666666666665555666666666666555555421 000
Q ss_pred hhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhccccccc
Q 042958 566 ELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHL 645 (1075)
Q Consensus 566 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 645 (1075)
. +.+.....|..+++|++|+|++|+|+...+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 523 ~----------------~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 523 A----------------NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp T----------------STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred h----------------ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 0 011122347788899999999999985444578999999999999999998777778899999
Q ss_pred ceeeeccccccCchhhhhc-cccccceeecCCCccccCCh
Q 042958 646 SELDLSHNFLREAIPSQIC-IMQSLENLNLSHNSLVGLIP 684 (1075)
Q Consensus 646 ~~L~ls~N~l~~~~~~~~~-~~~~L~~L~ls~N~l~~~~p 684 (1075)
+.|+|++|+|++..|..+. .+++|+.|++++|++....+
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999998888777 78899999999999986544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-58 Score=564.19 Aligned_cols=541 Identities=22% Similarity=0.222 Sum_probs=299.2
Q ss_pred EEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCc
Q 042958 52 SINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFEN 131 (1075)
Q Consensus 52 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 131 (1075)
.++|.+.++...+.. + -+++++|||++|.+++..|..|+++++|++|+|++|.+++..|.+|+++++|++|+|++|
T Consensus 16 ~~~c~~~~l~~iP~~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT--L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCSSCCTT--S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcccCcCC--C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 345555555533221 1 135677777777777666667777777777777777776666666777777777777777
Q ss_pred ccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCC
Q 042958 132 QLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPH 211 (1075)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 211 (1075)
++++..|..|+.+++|++|++++|.++++.+..++++++|++|++++|++++. .+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~ 147 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI------------------------KLP 147 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC------------------------CCC
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc------------------------Ccc
Confidence 66655555555555555555555555544444444444444444444444443 222
Q ss_pred CCcCCCCcCceeccccCCCCCCcccccCCCCCC--eEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCc
Q 042958 212 SLGNLTNLATLYLHNNSLFDSIPSELGNLRSLS--MLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLR 289 (1075)
Q Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 289 (1075)
.+..+++|++|++++|.+++..|..|+.+++|+ .|++++|.+++..|..+.. .+|++|++++|.. .+..+..+.
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~ 223 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLK 223 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTT
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhcc
Confidence 233355555555555555544445555555555 5555555555444444333 3555555555541 222333333
Q ss_pred cCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccccc--ccccccccCCcccccCCCcCCCCCCcceee
Q 042958 290 SLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLR--SLSNLGLSGNKLSGSIPPSLGYLSNLATLY 367 (1075)
Q Consensus 290 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~ 367 (1075)
++....+..+.+.+ +....+. +..+..+. +|+.|++++|.+++..+..|..+++|++|+
T Consensus 224 ~~~l~~l~~~~~~~-----------~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 224 NSTIQSLWLGTFED-----------MDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TCEEEEEECCCCTT-----------SCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred ccchhheechhhcc-----------ccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 33333322221111 1111111 11111111 345555555555544444455555555555
Q ss_pred ccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccc-cccccccccceecccccccc
Q 042958 368 LYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIP-SEFGNLRSLSTLSLGYNKLS 446 (1075)
Q Consensus 368 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 446 (1075)
+++|.+. .+|..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+.+| ..|..+++|++|++++|.++
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 5555553 444455555555555555555555555555555566666666665553332 33556666666666666665
Q ss_pred cCC--CCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCccc-ccCCCccceeeccCCCCCCCCCc
Q 042958 447 GSI--PHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQS-LGNLSNLVILYLYNNSLFDSIPS 523 (1075)
Q Consensus 447 ~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 523 (1075)
+.. |..+.++++|++|++++|++++..|..|..+++|+.|++++|++++..+.. +.++++|+.|++++|.+++..|.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 443 555666666666666666666666666666666666666666666554433 66677777777777766665565
Q ss_pred cccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecC
Q 042958 524 ELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLS 603 (1075)
Q Consensus 524 ~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 603 (1075)
.++.+++|+.|++++|++++. .+ ..+..+..+++|++|+|+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~-----------------~~----------------------~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKG-----------------NI----------------------QKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGG-----------------EE----------------------CSSCGGGGCTTCCEEECT
T ss_pred HHhCCCCCCEEECCCCCCCcc-----------------cc----------------------ccchhhccCCCccEEECC
Confidence 555555555555555444310 00 011235556677777777
Q ss_pred CCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCC
Q 042958 604 SNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLI 683 (1075)
Q Consensus 604 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 683 (1075)
+|++++..|..|+.+++|++|+|++|++++..|..+..+..| .|+|++|++++.+|..+..+++|+.|++++|++....
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 777776666677777777777777777766666666666666 6666666666666666666666666666666665543
Q ss_pred h
Q 042958 684 P 684 (1075)
Q Consensus 684 p 684 (1075)
+
T Consensus 564 ~ 564 (606)
T 3t6q_A 564 S 564 (606)
T ss_dssp G
T ss_pred C
Confidence 3
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-58 Score=568.12 Aligned_cols=533 Identities=22% Similarity=0.257 Sum_probs=366.6
Q ss_pred cceEEeCCC----------CceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCc
Q 042958 39 WVGIHCNRG----------GRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNL 108 (1075)
Q Consensus 39 w~gv~C~~~----------~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 108 (1075)
+.-|.|... ..++.++++++.+.+..+. .|+++++|++|||++|.+++..|..|+++++|++|+|++|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 566788652 3789999999999876554 59999999999999999998899999999999999999999
Q ss_pred ccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCcc
Q 042958 109 FFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSE 188 (1075)
Q Consensus 109 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 188 (1075)
+++..|..|+++++|++|+|++|++++..|..++.+++|++|++++|.+.++..+.+..+++|++|++++|.+++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99899999999999999999999999877888999999999999999999987666777999999999999999988999
Q ss_pred ccCccccc--eEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccccc
Q 042958 189 FGNLRSLS--MLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTN 266 (1075)
Q Consensus 189 ~~~l~~L~--~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 266 (1075)
|+.+++|+ .|++++|.+++..|..+.. .+|++|++++|. ..+..+..+.++....+..+.+.+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~----------- 237 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED----------- 237 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------
T ss_pred hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhcc-----------
Confidence 99999999 8999999999877776654 689999999886 345556666665555554333321
Q ss_pred ccccccccccCcCCCCcccCCCc--cCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccc
Q 042958 267 LATLYLYENSLSGSIPSEFGNLR--SLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGL 344 (1075)
Q Consensus 267 L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 344 (1075)
+....+..+ .|..+. +|+.|++++|.++++.+..|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 238 ~~~~~i~~~--------~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 238 MDDEDISPA--------VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp SCCCCCCGG--------GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred ccccccChh--------HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence 111122211 222222 5666777777776666666666666666666666666 45555666666666666
Q ss_pred cCCcccccCCCcCCCCCCcceeeccccccCCCCcc-ccCCCcccceeeeccccccccC--ChhhccCCCCCeEEeecccc
Q 042958 345 SGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPS-ELGNLRSLSMLSLGYNKLSGSI--PHSLGNLTNLATLDLYDNSL 421 (1075)
Q Consensus 345 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 421 (1075)
++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++.+.. +..+..+++|++|++++|++
T Consensus 309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 66666655555555556666666666555433332 3555555555555555555433 44455555555555555555
Q ss_pred ccccccccccccccceecccccccccCCCC-CCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCccc
Q 042958 422 SGSIPSEFGNLRSLSTLSLGYNKLSGSIPH-SLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQS 500 (1075)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 500 (1075)
++..|..|..+++|++|++++|++++..|. .|.++++|++|++++|.+++..|..++.+++|++|++++|++++...
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 466 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-- 466 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE--
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc--
Confidence 555555555555555555555555443332 24444555555555555444444444444444444444444433110
Q ss_pred ccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcc
Q 042958 501 LGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQ 580 (1075)
Q Consensus 501 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~ 580 (1075)
..+..+..+++|+.|++++|++
T Consensus 467 -------------------~~~~~~~~l~~L~~L~Ls~n~l--------------------------------------- 488 (606)
T 3t6q_A 467 -------------------QKTNSLQTLGRLEILVLSFCDL--------------------------------------- 488 (606)
T ss_dssp -------------------CSSCGGGGCTTCCEEECTTSCC---------------------------------------
T ss_pred -------------------ccchhhccCCCccEEECCCCcc---------------------------------------
Confidence 1112333333333333333322
Q ss_pred cccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchh
Q 042958 581 NQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIP 660 (1075)
Q Consensus 581 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 660 (1075)
++..|..|..+++|++|||++|++++..|..|..+++| +|+|++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 489 ---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 489 ---SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ---CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ---CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 22334456677788888888888888888888888888 88999998888888888888899999999999887554
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-57 Score=572.47 Aligned_cols=531 Identities=25% Similarity=0.281 Sum_probs=391.2
Q ss_pred eeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecccccccc-CCCCcCCCCcCceecccc
Q 042958 149 YLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSI-PHSLGNLTNLATLYLHNN 227 (1075)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N 227 (1075)
..+.+++.++.++. -.++|++|+|++|.|++..+..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 56777778877654 3477888888888888888888888888888888888655444 778888888888888888
Q ss_pred CCCCCCcccccCCCCCCeEeccCCCCCCccCCC--CcccccccccccccccCcCCCC-cccCCCccCcEEEccCCCCCCC
Q 042958 228 SLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHS--LGNLTNLATLYLYENSLSGSIP-SEFGNLRSLSMLNLGYNKLNGI 304 (1075)
Q Consensus 228 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 304 (1075)
.+++..|..|+.+++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 888777888888888888888888888755554 7888888888888888876654 5678888888888888888877
Q ss_pred cCCCCCcc--ccccceecccccccCCCCcccccccc------cccccccCCcccccCCCcCCCC---CCcceeecccccc
Q 042958 305 IPHSLGNL--TNLATLYIHNNSLSGSIPSEIGNLRS------LSNLGLSGNKLSGSIPPSLGYL---SNLATLYLYSNSL 373 (1075)
Q Consensus 305 ~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~l~~N~l~~~~~~~l~~l---~~L~~L~L~~N~l 373 (1075)
.+..|..+ ++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+++..+..+... .+++.|.++.+.+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 77777777 78888888888888777776666555 7778888777776666655432 4566666653332
Q ss_pred CCCCccccCCCcccceeeeccccccccCChhhccC--CCCCeEEeeccccccccccccccccccceecccccccccCCCC
Q 042958 374 FDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNL--TNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPH 451 (1075)
Q Consensus 374 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 451 (1075)
.. +++.|.+.+..+..|.++ ++|+.|++++|.+++..+..|..+++|+.|+|++|++++..|.
T Consensus 244 ~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 244 GA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp BC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred cc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 11 011223333333334443 4566666666666655566666666666666666666655566
Q ss_pred CCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCcccc
Q 042958 452 SLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSL 531 (1075)
Q Consensus 452 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 531 (1075)
.|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|.++++|+.|+|++|.+++. ..+++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L 383 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSI 383 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCc
Confidence 666666666666666666655566666666666666666666655555566666666666666666432 225566
Q ss_pred ccccccccccccccC---CcccccccCCCccccc-cchhhhhhhHhHHHhhccccccccccc-ccCcccccceeecCCCc
Q 042958 532 SMLSFAYNKLSGSIP---HSLGVLDLSSNHIVGE-IPTELGKLNFLIKLILAQNQLSGQLSP-KLGSLAQLEHLDLSSNR 606 (1075)
Q Consensus 532 ~~L~l~~N~l~~~~p---~~l~~L~Ls~N~l~~~-~p~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~ 606 (1075)
+.|++++|+++ .+| ..++.|++++|++++. .+..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.
T Consensus 384 ~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 384 PDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp SEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred chhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 66666666665 233 3567788888888763 234466788999999999999976544 36678999999999999
Q ss_pred cc-----CcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCcccc
Q 042958 607 LS-----NSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVG 681 (1075)
Q Consensus 607 l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 681 (1075)
++ +..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+. ++|+.|++++|+|++
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 97 45567799999999999999999999999999999999999999999997777665 899999999999999
Q ss_pred CChhhhcccccccEEeecCCccCCCCCC
Q 042958 682 LIPSCFEKMHGLLRIDISYNELQGPIPN 709 (1075)
Q Consensus 682 ~~p~~~~~~~~l~~l~~s~N~~~~~~p~ 709 (1075)
.+|..|. .|+.+++++|++.|.++.
T Consensus 541 ~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 541 PNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred CChhHhC---CcCEEEecCCCccccccc
Confidence 9998765 688999999999998874
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-56 Score=566.43 Aligned_cols=539 Identities=23% Similarity=0.226 Sum_probs=343.8
Q ss_pred EEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccC-CCCCCCCCCCcEEEccCc
Q 042958 53 INLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTI-PPEIGHLSYLKTLQLFEN 131 (1075)
Q Consensus 53 l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n 131 (1075)
++++++++...+. -.++|++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|
T Consensus 9 ~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4677777776543 2477888888888888778888888888888888888665566 677888888888888888
Q ss_pred ccCCCCCccccccCCcceeecccccccCCCCCC--CCCCCCCCEEEcCCCCCCCCCC-ccccCccccceEeeeccccccc
Q 042958 132 QLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPS--LGNLSNLDTLHLYDNSLSDSIP-SEFGNLRSLSMLSLGYNKFSGS 208 (1075)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 208 (1075)
.+++..|..|+++++|++|+|++|.+.+..+.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 888777778777777777777777777654443 7777777777777777766544 4567777777777777777766
Q ss_pred cCCCCcCC--CCcCceeccccCCCCCCcccccCCCC------CCeEeccCCCCCCccCCCCcccccccccccccccCcCC
Q 042958 209 IPHSLGNL--TNLATLYLHNNSLFDSIPSELGNLRS------LSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGS 280 (1075)
Q Consensus 209 ~~~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 280 (1075)
.+..+..+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+++..+..+...
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------- 227 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------- 227 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT----------------
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh----------------
Confidence 66666665 66777777777766655555554443 5555555555554444433321
Q ss_pred CCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccc--cccccccccCCcccccCCCcCC
Q 042958 281 IPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNL--RSLSNLGLSGNKLSGSIPPSLG 358 (1075)
Q Consensus 281 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~l~ 358 (1075)
....+++.|.++.+.+... ...+.+....+..|.++ ++|+.|++++|.+.+..+..|.
T Consensus 228 -----l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 228 -----ISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp -----SCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred -----cCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 0113445555543322110 11122222222233332 4556666666666555555566
Q ss_pred CCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeecccccccccccccccccccee
Q 042958 359 YLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTL 438 (1075)
Q Consensus 359 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 438 (1075)
.+++|+.|+|++|.+.+..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|+++++.+..|.++++|++|
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 66666666666666655555566666666666666666665556666666666666666666666555666666666666
Q ss_pred cccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCC-cccccCCCccceeeccCCCC
Q 042958 439 SLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSI-PQSLGNLSNLVILYLYNNSL 517 (1075)
Q Consensus 439 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 517 (1075)
+|++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+.++++|+.|+|++|++
T Consensus 368 ~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 368 DLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp EEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 666666652 22 2566677777777776 34433 345777777777776532 23355777888888888887
Q ss_pred CCCCCc-cccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccc
Q 042958 518 FDSIPS-ELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQ 596 (1075)
Q Consensus 518 ~~~~~~-~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~ 596 (1075)
++..+. .+..+++|+.|++++|.+++ ..+ .+..+..|..+++
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~------------------~~~-------------------~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQL------------------AWE-------------------TELCWDVFEGLSH 481 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSS------------------SCC-------------------SCCCSSCSSCBCC
T ss_pred cccccccccccCCccccccCCCCcccc------------------ccc-------------------cccchhhhcCccc
Confidence 654333 23345555555555554431 111 0123345666777
Q ss_pred cceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCC
Q 042958 597 LEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSH 676 (1075)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~ 676 (1075)
|+.|||++|+|++..|..|..+++|++|+|++|+|++..|..+. ++|+.|||++|+|++.+|..+ .+|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence 77777777777777777777777777777777777776666555 677778888888777777654 3677778888
Q ss_pred CccccCC
Q 042958 677 NSLVGLI 683 (1075)
Q Consensus 677 N~l~~~~ 683 (1075)
|++....
T Consensus 557 Np~~C~c 563 (844)
T 3j0a_A 557 NKFICEC 563 (844)
T ss_dssp ECCCCSS
T ss_pred CCccccc
Confidence 8776543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-56 Score=548.69 Aligned_cols=536 Identities=23% Similarity=0.217 Sum_probs=291.9
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.+|.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 57888888887 7777665 78889999999888777778888888888888888888766777677777777777777
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecccccc-ccCCCCcCCCCcCceeccccCCCCCCc
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSG-SIPHSLGNLTNLATLYLHNNSLFDSIP 234 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (1075)
.++++.|..|+++++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 7666666666666666666666666666555566666666666666666654 345556666666666666666655555
Q ss_pred ccccCCCCCC----eEeccCCCCCCccCCCCcccccccccccccccCc-CCCCcccCCCccCcEEEccCCCCCCCcCCCC
Q 042958 235 SELGNLRSLS----MLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLS-GSIPSEFGNLRSLSMLNLGYNKLNGIIPHSL 309 (1075)
Q Consensus 235 ~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 309 (1075)
..++.+++|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..+.+++.|+.+++..+.+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---- 245 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---- 245 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC----
Confidence 5555444433 45555555554333333332 5555555555554 233444555555555555443332110
Q ss_pred CccccccceecccccccCCCCccccccc--ccccccc-cCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcc
Q 042958 310 GNLTNLATLYIHNNSLSGSIPSEIGNLR--SLSNLGL-SGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRS 386 (1075)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l-~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 386 (1075)
.+. ...+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++
T Consensus 246 ----~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~ 308 (606)
T 3vq2_A 246 ----NLE----------IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFK 308 (606)
T ss_dssp ----CCS----------CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCC
T ss_pred ----ccc----------ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hcccccc
Confidence 000 00111111111 2333333 33444444433 444445555555555442 223 4444444
Q ss_pred cceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccC--CCCCCccccccccccc
Q 042958 387 LSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGS--IPHSLGNLTNLDALYL 464 (1075)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L 464 (1075)
|++|++++|++ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|++
T Consensus 309 L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 55555555544 2334 22 4444555555444332211 334444444444444444432 1334444444444444
Q ss_pred cCCccccCCCccccCcCCCCEEeCCCCcccCCCc-ccccCCCccceeeccCCCCCCCCCccccCcccccccccccccccc
Q 042958 465 YDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIP-QSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSG 543 (1075)
Q Consensus 465 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 543 (1075)
++|.+++ +|..+..+++|+.|++++|++++..| ..+.++++|+.|++++|.+++..
T Consensus 384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 440 (606)
T 3vq2_A 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF---------------------- 440 (606)
T ss_dssp CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC----------------------
T ss_pred CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc----------------------
Confidence 4444442 33444444444444444444443333 23344444444444444333322
Q ss_pred ccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccC-cccccccccccce
Q 042958 544 SIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSN-SIPKSFGNLVKLH 622 (1075)
Q Consensus 544 ~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 622 (1075)
|..+..+++|++|+|++|++++ .+|..|+.+++|+
T Consensus 441 --------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 441 --------------------------------------------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp --------------------------------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred --------------------------------------------hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 2334444555555555555554 2455556666666
Q ss_pred EEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhcccc-cccEEeecCC
Q 042958 623 YLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMH-GLLRIDISYN 701 (1075)
Q Consensus 623 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~l~~s~N 701 (1075)
+|+|++|++++..|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|+|+ .+|..+..++ .|+.+++++|
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 6666666666555556666666666666666666666666666666666666666666 3444466665 3777777777
Q ss_pred ccCCCCCC
Q 042958 702 ELQGPIPN 709 (1075)
Q Consensus 702 ~~~~~~p~ 709 (1075)
++.|.++.
T Consensus 556 ~~~c~c~~ 563 (606)
T 3vq2_A 556 SVACICEH 563 (606)
T ss_dssp CCCCSSTT
T ss_pred CcccCCcc
Confidence 77766653
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.7e-58 Score=561.20 Aligned_cols=477 Identities=21% Similarity=0.325 Sum_probs=273.6
Q ss_pred hhHHHHHHHHHhccCCCCC------CCcCCCCcCCCCCCCCCcc---ceEEeCCCCceeEEEecccccccccCCcccCCC
Q 042958 2 EEAHALLRWKTSLQNHNNG------SLLSSWTLNNVTKTSPCAW---VGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSF 72 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~------~~l~sw~~~~~~~~~~c~w---~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l 72 (1075)
.|++||.+||+++..+.+. ....+|+. ++.+|.| .||+|+..|||++|+|+++++.|.++++ +++|
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~-l~~L 104 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-IGQL 104 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCC----SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGG-GGGC
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC----CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChH-HhcC
Confidence 5899999999999765331 13447872 3334999 9999998899999999999999999976 9999
Q ss_pred CCccEEEccCCCc------cC------CCCccccccCCCceeecccCcccccCCCCCCCC-CCCcEEEcc----------
Q 042958 73 PHLAYLDLWHNQL------YG------NIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHL-SYLKTLQLF---------- 129 (1075)
Q Consensus 73 ~~L~~L~L~~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls---------- 129 (1075)
++|++|||++|.+ .| .+|... +.+|+ ++++.|.+.+.+|..+..+ ..+..+++.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999976 33 455544 66777 8888888888877776632 222233333
Q ss_pred ----------CcccCCCCCccccccCCcceeecccccccCC-----------------CCCCCC--CCCCCCEEEcCCCC
Q 042958 130 ----------ENQLNGSIPYEIGRLSSLNYLALYSNYLEDL-----------------IPPSLG--NLSNLDTLHLYDNS 180 (1075)
Q Consensus 130 ----------~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~ 180 (1075)
+|+++| +|..++.+++|++|+|++|.+++. +|..++ ++++|++|+|++|+
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 344544 455555555555555555555543 444444 55555555555555
Q ss_pred CCCCCCccccCccccceEeeeccc-ccc-ccCCCCcCC------CCcCceeccccCCCCCCcc--cccCCCCCCeEeccC
Q 042958 181 LSDSIPSEFGNLRSLSMLSLGYNK-FSG-SIPHSLGNL------TNLATLYLHNNSLFDSIPS--ELGNLRSLSMLSLGY 250 (1075)
Q Consensus 181 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~l~~l------~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~ 250 (1075)
+.+.+|..|+++++|++|+|++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 555555555555555555555554 444 444444443 44555555555554 3444 444555555555555
Q ss_pred CCCCCccCCCCcccccccccccccccCcCCCCcccCCCcc-CcEEEccCCCCCCCcCCCCCccccccceecccccccCCC
Q 042958 251 NKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRS-LSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSI 329 (1075)
Q Consensus 251 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 329 (1075)
|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~---------------- 400 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS---------------- 400 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC----------------
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc----------------
Confidence 55544444 4444455555555555544 34444444444 555555555444 3344443332
Q ss_pred CcccccccccccccccCCcccccCCCcCC-------CCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCC
Q 042958 330 PSEIGNLRSLSNLGLSGNKLSGSIPPSLG-------YLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIP 402 (1075)
Q Consensus 330 ~~~~~~l~~L~~L~l~~N~l~~~~~~~l~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 402 (1075)
+++|+.|++++|++++.+|..+. .+++|++|+|++|.+.+..+..+..+++|++|+|++|+++...+
T Consensus 401 ------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 401 ------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp ------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred ------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 11444444444444444444444 44455555555555543222233345555555555555552222
Q ss_pred hhhccC-------CCCCeEEeeccccccccccccc--cccccceecccccccccCCCCCCccccccccccc------cCC
Q 042958 403 HSLGNL-------TNLATLDLYDNSLSGSIPSEFG--NLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYL------YDN 467 (1075)
Q Consensus 403 ~~~~~l-------~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L------~~N 467 (1075)
..+... ++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|+.|+| ++|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 222222 25666666666665 3444443 55666666666666654 5555556666666666 456
Q ss_pred ccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCC
Q 042958 468 SLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLF 518 (1075)
Q Consensus 468 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 518 (1075)
++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 66666777777777777777777777 45565554 56777777777664
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-56 Score=547.71 Aligned_cols=536 Identities=24% Similarity=0.228 Sum_probs=383.1
Q ss_pred EEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCc
Q 042958 52 SINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFEN 131 (1075)
Q Consensus 52 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 131 (1075)
.++|++.++...+... .+++++|||++|.+++..+..++++++|++|+|++|.+++..|.+|+++++|++|+|++|
T Consensus 15 ~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI----PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTS----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcccCCCCC----CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4677777777554322 278999999999999888889999999999999999999888999999999999999999
Q ss_pred ccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCC-CCCccccCccccceEeeeccccccccC
Q 042958 132 QLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSD-SIPSEFGNLRSLSMLSLGYNKFSGSIP 210 (1075)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 210 (1075)
++++..|..|+++++|++|++++|.+.++.+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9999889999999999999999999999998999999999999999999986 569999999999999999999999889
Q ss_pred CCCcCCCCcC----ceeccccCCCCCCcccccCCCCCCeEeccCCCCC-CccCCCCcccccccccccccccCcCCCCccc
Q 042958 211 HSLGNLTNLA----TLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLS-GSIPHSLGNLTNLATLYLYENSLSGSIPSEF 285 (1075)
Q Consensus 211 ~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 285 (1075)
..++.+++|+ +|++++|.+++..+..+... +|+.|++++|.+. +..|..+.++++|+.+++..+.+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---- 245 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---- 245 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC----
Confidence 8898887776 79999999987666666555 8999999999997 356778889999999998877665321
Q ss_pred CCCccCcEEEccCCCCCCCcCCCCCccccccceec-ccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcc
Q 042958 286 GNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYI-HNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLA 364 (1075)
Q Consensus 286 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~ 364 (1075)
.+.. +....+..+..+ .++.+++ ..|.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+
T Consensus 246 ----~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~ 310 (606)
T 3vq2_A 246 ----NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ 310 (606)
T ss_dssp ----CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred ----cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence 0100 000111111222 3444444 45555555554 666666666666666665 334 566666667
Q ss_pred eeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeecccccccc--ccccccccccceecccc
Q 042958 365 TLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSI--PSEFGNLRSLSTLSLGY 442 (1075)
Q Consensus 365 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 442 (1075)
+|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++.. |..+..+++|++|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 777777666 5555 33 6667777777777543322 4556777777777777776552 56677777777777777
Q ss_pred cccccCCCCCCccccccccccccCCccccCCC-ccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCC
Q 042958 443 NKLSGSIPHSLGNLTNLDALYLYDNSLSGSIP-GEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSI 521 (1075)
Q Consensus 443 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 521 (1075)
|.+++ +|..|..+++|+.|++++|++++..| ..+..+++|+.|++++|++++..|..++++++|+.|++++|++++.
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 463 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN- 463 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc-
Confidence 77763 55677777777777777777776666 5677777888888888887777777777777777777777665431
Q ss_pred CccccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceee
Q 042958 522 PSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLD 601 (1075)
Q Consensus 522 ~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 601 (1075)
.+|..+..+++|++|+
T Consensus 464 ----------------------------------------------------------------~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 464 ----------------------------------------------------------------TLSNVFANTTNLTFLD 479 (606)
T ss_dssp ----------------------------------------------------------------EECSCCTTCTTCCEEE
T ss_pred ----------------------------------------------------------------chHHhhccCCCCCEEE
Confidence 1122334444555555
Q ss_pred cCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhcccc-ccceeecCCCccc
Q 042958 602 LSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQ-SLENLNLSHNSLV 680 (1075)
Q Consensus 602 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~-~L~~L~ls~N~l~ 680 (1075)
|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|||++|+|+. +|..+..++ +|+.|++++|++.
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcc
Confidence 55555555555555555555555555555555555555555555555555555552 444455554 3666666666665
Q ss_pred cCC
Q 042958 681 GLI 683 (1075)
Q Consensus 681 ~~~ 683 (1075)
...
T Consensus 559 c~c 561 (606)
T 3vq2_A 559 CIC 561 (606)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-55 Score=548.80 Aligned_cols=494 Identities=21% Similarity=0.309 Sum_probs=327.5
Q ss_pred hhHHHHHHHHHhccCCCCCCCcCCCCcCC-CCCCCC--Ccc------------ceEEeCCCCceeEEEecccccccccCC
Q 042958 2 EEAHALLRWKTSLQNHNNGSLLSSWTLNN-VTKTSP--CAW------------VGIHCNRGGRVNSINLTSIGLKGMLHD 66 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~~~l~sw~~~~-~~~~~~--c~w------------~gv~C~~~~~v~~l~l~~~~l~g~~~~ 66 (1075)
+|++||++||+++.++ +|+... +....+ |.| .||+|+..+||++|+|+++++.|.+++
T Consensus 269 ~d~~ALl~~k~~l~~~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 269 KDYKALKAIWEALDGK-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHTTGG-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred HHHHHHHHHHHHcCCC-------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 5899999999999653 686321 001234 999 999999889999999999999999997
Q ss_pred cccCCCCCccEEEc-cCCCccCCCCcccccc-------------------------------------------------
Q 042958 67 FSFSSFPHLAYLDL-WHNQLYGNIPPQIGNI------------------------------------------------- 96 (1075)
Q Consensus 67 ~~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l------------------------------------------------- 96 (1075)
+ +++|++|++||| ++|.++|..|......
T Consensus 342 ~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 342 A-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp G-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred H-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 6 999999999999 8898888755321111
Q ss_pred --CCCceeeccc--CcccccCCCCCCCCCCCcEEEccCcccCCC-CCccccccCCcceeecccccccCCCCCCCC--CCC
Q 042958 97 --SRLKYLDLSS--NLFFGTIPPEIGHLSYLKTLQLFENQLNGS-IPYEIGRLSSLNYLALYSNYLEDLIPPSLG--NLS 169 (1075)
Q Consensus 97 --~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~ 169 (1075)
..++.+.+.. |.+++ +|..|+++++|++|+|++|++++. +|..+ +..+.|...+.+|..++ +++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--------~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW--------EDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--------SCTTSHHHHHHTTSCCCGGGCT
T ss_pred cccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc--------cccccccccccCChhhhhccCC
Confidence 1122222222 44444 455555555555555555555541 11000 00001111113566665 777
Q ss_pred CCCEEEcCCCCCCCCCCccccCccccceEeeeccc-ccc-ccCCCCcCCC-------CcCceeccccCCCCCCcc--ccc
Q 042958 170 NLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNK-FSG-SIPHSLGNLT-------NLATLYLHNNSLFDSIPS--ELG 238 (1075)
Q Consensus 170 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~l~~l~-------~L~~L~L~~N~l~~~~~~--~~~ 238 (1075)
+|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .++
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 77777777777777777777777777777777776 666 5665444443 7777777777776 5666 677
Q ss_pred CCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCcc-CcEEEccCCCCCCCcCCCCCcccc--c
Q 042958 239 NLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRS-LSMLNLGYNKLNGIIPHSLGNLTN--L 315 (1075)
Q Consensus 239 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~--L 315 (1075)
.+++|++|+|++|+++ .+| .|+.+++|++|+|++|.++ .+|..+..+++ |+.|+|++|+++ .+|..+..++. |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 7777777777777777 566 6777777777777777777 56666777777 777777777777 55666665543 7
Q ss_pred cceecccccccCCCCccc---c--cccccccccccCCcccccCCCc-CCCCCCcceeeccccccCCCCccccC-------
Q 042958 316 ATLYIHNNSLSGSIPSEI---G--NLRSLSNLGLSGNKLSGSIPPS-LGYLSNLATLYLYSNSLFDSIPSELG------- 382 (1075)
Q Consensus 316 ~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~~~------- 382 (1075)
+.|+|++|.+.+.+|... . .+.+|+.|++++|+++ .+|.. +..+++|+.|+|++|.+. .+|..+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 777777777776554322 2 2346777777777777 34443 346777778888877775 4444332
Q ss_pred -CCcccceeeeccccccccCChhhc--cCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccccc
Q 042958 383 -NLRSLSMLSLGYNKLSGSIPHSLG--NLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNL 459 (1075)
Q Consensus 383 -~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 459 (1075)
++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++|+
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------------- 787 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------------- 787 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB---------------
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC---------------
Confidence 2348888888888887 6777776 88888888888888886 67778888888888888765
Q ss_pred ccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCcccccccccccc
Q 042958 460 DALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYN 539 (1075)
Q Consensus 460 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 539 (1075)
++++|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|
T Consensus 788 ---~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 788 ---DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp ---CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred ---CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 4556666666666666666666666666666 45555544 46666666666666555555555555566666666
Q ss_pred ccc
Q 042958 540 KLS 542 (1075)
Q Consensus 540 ~l~ 542 (1075)
++.
T Consensus 862 ~~~ 864 (876)
T 4ecn_A 862 KTQ 864 (876)
T ss_dssp TTS
T ss_pred Ccc
Confidence 543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-51 Score=496.36 Aligned_cols=516 Identities=22% Similarity=0.226 Sum_probs=320.8
Q ss_pred ceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecccc
Q 042958 148 NYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNN 227 (1075)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 227 (1075)
...+.++..++.++. .+. +++++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~~ip~-~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCS-SSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCC-Ccc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 345555555555432 222 45777777777777666666777777777777777776666666777777777777777
Q ss_pred CCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCC-CCcccCCCccCcEEEccCCCCCCCcC
Q 042958 228 SLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGS-IPSEFGNLRSLSMLNLGYNKLNGIIP 306 (1075)
Q Consensus 228 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 306 (1075)
.+++..|..|+.+++|++|++++|++++..+..++++++|++|++++|.+++. +|..|+++++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 76665566666777777777777776654444566666666666666666652 46666666666666666666666555
Q ss_pred CCCCccccc----cceecccccccCCCCcccccccccccccccCCcccc-cCCCcCCCCCCcceeeccccccCCCCcccc
Q 042958 307 HSLGNLTNL----ATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSG-SIPPSLGYLSNLATLYLYSNSLFDSIPSEL 381 (1075)
Q Consensus 307 ~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~ 381 (1075)
..|+.+++| +.|++++|.+++..|..+..+ +|+.|++++|.... .++..+..+++++.+.+.-+.+...
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----- 240 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----- 240 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-----
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-----
Confidence 666666666 566666666665555555544 56666666553221 1223334444444433322211100
Q ss_pred CCCcccceeeeccccccccCChhhccCC--CCCeEEeecc-ccccccccccccccccceecccccccccCCCCCCccccc
Q 042958 382 GNLRSLSMLSLGYNKLSGSIPHSLGNLT--NLATLDLYDN-SLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTN 458 (1075)
Q Consensus 382 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 458 (1075)
+.+.......+..++ .++.+++++| .+.+..|..|..+++|++|++++|.++ .+|..+..+ +
T Consensus 241 -------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~ 305 (570)
T 2z63_A 241 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G 305 (570)
T ss_dssp -------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred -------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C
Confidence 000001111122221 1334444444 444444444555555555555555544 344444444 5
Q ss_pred cccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCC--CccccCccccccccc
Q 042958 459 LDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSI--PSELGNLRSLSMLSF 536 (1075)
Q Consensus 459 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~l 536 (1075)
|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|+.|++
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 555555555554 3332 2444455555555554433332 44455555555555544322 333344444333333
Q ss_pred cccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccc-cccCcccccceeecCCCcccCcccccc
Q 042958 537 AYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLS-PKLGSLAQLEHLDLSSNRLSNSIPKSF 615 (1075)
Q Consensus 537 ~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 615 (1075)
++|. +.+..+. +..+++|+.|++++|++++..+ ..+..+++|++|++++|++++..|..|
T Consensus 381 ~~n~------------------l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 381 SFNG------------------VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp CSCS------------------EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred CCCc------------------ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 3333 3322222 5555566666666666665544 457889999999999999998899999
Q ss_pred cccccceEEEccccccc-cccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhccccccc
Q 042958 616 GNLVKLHYLNLSNNQFS-RGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLL 694 (1075)
Q Consensus 616 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~ 694 (1075)
..+++|++|+|++|+++ +.+|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++.+|..|.+++.|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 99999999999999997 57899999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeecCCccCCCCCCCc
Q 042958 695 RIDISYNELQGPIPNSI 711 (1075)
Q Consensus 695 ~l~~s~N~~~~~~p~~~ 711 (1075)
.|++++|+++|.+|...
T Consensus 522 ~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 522 KIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCBCCCTTTTH
T ss_pred EEEecCCcccCCCcchH
Confidence 99999999999998743
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-51 Score=495.61 Aligned_cols=499 Identities=24% Similarity=0.203 Sum_probs=295.7
Q ss_pred EEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcc
Q 042958 53 INLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQ 132 (1075)
Q Consensus 53 l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 132 (1075)
++|++.++...+.. + .+++++|||++|++++..+..++++++|++|+|++|.+++..|..|+++++|++|+|++|+
T Consensus 12 ~~c~~~~l~~ip~~--l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 12 YQCMELNFYKIPDN--L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECCSSCCSSCCSS--S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEeCCCCccccCCC--c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 45555566543322 1 2468888888888887777788888888888888888887777778888888888888888
Q ss_pred cCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCC-CCccccCccccceEeeeccccccccCC
Q 042958 133 LNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDS-IPSEFGNLRSLSMLSLGYNKFSGSIPH 211 (1075)
Q Consensus 133 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 211 (1075)
+++..|..|+++++|++|++++|.++++.+..++++++|++|++++|.+++. +|..|+++++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 8876677888888888888888888887776788888888888888888763 577888888888888888888877777
Q ss_pred CCcCCCCc----CceeccccCCCCCCcccccCCCCCCeEeccCCCCCC-ccCCCCcccccccccccccccCc------CC
Q 042958 212 SLGNLTNL----ATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG-SIPHSLGNLTNLATLYLYENSLS------GS 280 (1075)
Q Consensus 212 ~l~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~------~~ 280 (1075)
.++.+++| ++|++++|.+++..|..+..+ +|+.|++++|.... .++..+..+++++.+.+....+. ..
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 77777777 778888888877767666655 68888888774432 12223333333333333222111 11
Q ss_pred CCcccCCCcc--CcEEEccCC-CCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcC
Q 042958 281 IPSEFGNLRS--LSMLNLGYN-KLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSL 357 (1075)
Q Consensus 281 ~~~~~~~l~~--L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l 357 (1075)
....|..+++ ++.+++++| .+.+..+..|..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-- 321 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-- 321 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence 1122222221 334444444 444444555555555555555555555 344444444 5555555555554 2332
Q ss_pred CCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccC--ChhhccCCCCCeEEeecccccccccccccccccc
Q 042958 358 GYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSI--PHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSL 435 (1075)
Q Consensus 358 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 435 (1075)
..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+. |..+++|
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL 398 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence 2444555555555554433332 44455555555555554332 44455555555555555555543332 5555555
Q ss_pred ceecccccccccCCC-CCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCccc-CCCcccccCCCccceeecc
Q 042958 436 STLSLGYNKLSGSIP-HSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLS-GSIPQSLGNLSNLVILYLY 513 (1075)
Q Consensus 436 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~ 513 (1075)
++|++++|.+++..| ..+.++++|++|++++|++++..|..+..+++|+.|++++|+++ +.+|..+..+++|+.|+++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 555555555554333 34455555555555555555555555555555555555555554 3445555555555555555
Q ss_pred CCCCCCCCCccccCccccccccccccccccccC------CcccccccCCCccccccc
Q 042958 514 NNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIP------HSLGVLDLSSNHIVGEIP 564 (1075)
Q Consensus 514 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p------~~l~~L~Ls~N~l~~~~p 564 (1075)
+|++++..|..+..+++|+.|++++|++++..| ++++.|++++|.+++..|
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 555555445555555555555555555544322 134555555555555443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-50 Score=490.55 Aligned_cols=482 Identities=22% Similarity=0.237 Sum_probs=382.3
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|.|| |+.. ++++.. +|+. + .++|++|||++|++++..|..++++++|++|+|++|.+++..|.+
T Consensus 4 C~~~~~-c~~~---------~~~l~~-ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 4 CDASGV-CDGR---------SRSFTS-IPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp ECTTSE-EECT---------TSCCSS-CCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCce-EECC---------CCcccc-cccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 999999 9643 344443 3332 2 378999999999999888999999999999999999999888899
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCC-CCCCCCCCCCCCEEEcCCCCC-CCCCCccccCccc
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDL-IPPSLGNLSNLDTLHLYDNSL-SDSIPSEFGNLRS 194 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~ 194 (1075)
|+++++|++|+|++|++++..|..|+.+++|++|++++|.++++ .|..++++++|++|++++|.+ ....+..|.++++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 99999999999999999987777899999999999999999985 467899999999999999984 4444578999999
Q ss_pred cceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCccc-ccCCCCCCeEeccCCCCCCcc--C-CCCccccccccc
Q 042958 195 LSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSE-LGNLRSLSMLSLGYNKLSGSI--P-HSLGNLTNLATL 270 (1075)
Q Consensus 195 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~--~-~~~~~l~~L~~L 270 (1075)
|++|++++|++++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|++++.. | .....+++|+.|
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999999999999999999999999999864 4444 467999999999999999742 2 233457889999
Q ss_pred ccccccCcCCCC----cccCCCccCcEEEccCCCCCCCc------CCCCCccccccceecccccccCC-----CCccccc
Q 042958 271 YLYENSLSGSIP----SEFGNLRSLSMLNLGYNKLNGII------PHSLGNLTNLATLYIHNNSLSGS-----IPSEIGN 335 (1075)
Q Consensus 271 ~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~ 335 (1075)
++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+... .+..+..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 999999886433 34566789999999999887542 23456778888898888876532 1222334
Q ss_pred ccccccccccCCcccccCCCcC-CCCCCcceeeccccccCCCCc---cccCCCcccceeeeccccccccCC--hhhccCC
Q 042958 336 LRSLSNLGLSGNKLSGSIPPSL-GYLSNLATLYLYSNSLFDSIP---SELGNLRSLSMLSLGYNKLSGSIP--HSLGNLT 409 (1075)
Q Consensus 336 l~~L~~L~l~~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~ 409 (1075)
..+|+.|++++|++. .+|..+ ..+++|++|++++|++.+..| ..++.+++|++|++++|++++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 567888888888887 556555 568888888888888876654 336778888888888888875432 4577888
Q ss_pred CCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCC
Q 042958 410 NLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALN 489 (1075)
Q Consensus 410 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 489 (1075)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|+|+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 8888888888887 46777888888888888888887 3444432 57888888888888642 467788888888
Q ss_pred CCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccc
Q 042958 490 NNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGS 544 (1075)
Q Consensus 490 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 544 (1075)
+|+|+ .+|. .+.+++|+.|+|++|++++..|..+..+++|+.|++++|.+++.
T Consensus 460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 88887 4555 46788888888888888887777788888777777777776543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-51 Score=501.05 Aligned_cols=451 Identities=20% Similarity=0.300 Sum_probs=372.9
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcc------cc------cCCCCCCCCCCCcEEEccCcccCCCCCcc
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLF------FG------TIPPEIGHLSYLKTLQLFENQLNGSIPYE 140 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 140 (1075)
.+++.|||+++++.|.+|+++++|++|++|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999987 33 344333 56677 889999998888877
Q ss_pred ccc-cCCcceeecccccccCCCCCCCCCCCCCCEEEcC--CCCCCCCCCccccCccccceEeeeccccccc---------
Q 042958 141 IGR-LSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLY--DNSLSDSIPSEFGNLRSLSMLSLGYNKFSGS--------- 208 (1075)
Q Consensus 141 ~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 208 (1075)
+.. +..+..+++....+.. .....++.+.+. .|++++ +|..|+++++|++|+|++|++++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 664 3444455554433322 112233333333 578888 888899999999999999999975
Q ss_pred --------cCCCCc--CCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCC-CCC-ccCCCCccc------cccccc
Q 042958 209 --------IPHSLG--NLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNK-LSG-SIPHSLGNL------TNLATL 270 (1075)
Q Consensus 209 --------~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l------~~L~~L 270 (1075)
+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 899998 99999999999999999999999999999999999998 888 788888776 899999
Q ss_pred ccccccCcCCCCc--ccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccc-cccccccCC
Q 042958 271 YLYENSLSGSIPS--EFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRS-LSNLGLSGN 347 (1075)
Q Consensus 271 ~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N 347 (1075)
++++|+++ .+|. .|+.+++|++|++++|+++|.+| .|+.+++|++|++++|.++ .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 99999999 7888 89999999999999999997888 8999999999999999999 78888999999 999999999
Q ss_pred cccccCCCcCCCCC--CcceeeccccccCCCCccccC-------CCcccceeeeccccccccCChhhccCCCCCeEEeec
Q 042958 348 KLSGSIPPSLGYLS--NLATLYLYSNSLFDSIPSELG-------NLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYD 418 (1075)
Q Consensus 348 ~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 418 (1075)
+++ .+|..+..++ +|++|++++|.+.+..|..+. .+.+|++|+|++|+++...+..+..+++|++|+|++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 999 7888887765 899999999999998888888 788999999999999865555667799999999999
Q ss_pred cccccccccccccc-------cccceecccccccccCCCCCCc--cccccccccccCCccccCCCccccCcCCCCEEeC-
Q 042958 419 NSLSGSIPSEFGNL-------RSLSTLSLGYNKLSGSIPHSLG--NLTNLDALYLYDNSLSGSIPGEIGNLRSISNLAL- 488 (1075)
Q Consensus 419 N~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L- 488 (1075)
|+++.+.+..+... ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 99995544455443 38999999999998 6777776 89999999999999997 8888999999999999
Q ss_pred -----CCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccc
Q 042958 489 -----NNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLS 542 (1075)
Q Consensus 489 -----~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 542 (1075)
++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 45777778888888888888888888888 56666554 56666666666543
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-49 Score=478.09 Aligned_cols=484 Identities=21% Similarity=0.213 Sum_probs=254.4
Q ss_pred cEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecc
Q 042958 124 KTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYN 203 (1075)
Q Consensus 124 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 203 (1075)
.+.|.++|.++ .+|..+. ++|++|++++|.++++.|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 34566677776 4555432 45666666666665555555555555555555555555555555555555555555555
Q ss_pred ccccccCCCCcCCCCcCceeccccCCCCC-CcccccCCCCCCeEeccCCCCCCccC-CCCcccccccccccccccCcCCC
Q 042958 204 KFSGSIPHSLGNLTNLATLYLHNNSLFDS-IPSELGNLRSLSMLSLGYNKLSGSIP-HSLGNLTNLATLYLYENSLSGSI 281 (1075)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 281 (1075)
++++..|..|+++++|++|++++|.+++. .|..++.+++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 55544444455555555555555555432 33445555555555555555322232 34555555555555555555545
Q ss_pred CcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCC
Q 042958 282 PSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLS 361 (1075)
Q Consensus 282 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~ 361 (1075)
|..+..+++|+.|++++|.+.......+..+++|++|++++|.+++.... .......++
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~ 223 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSS 223 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCC
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhh
Confidence 55555555555555555554422222223344555555555554432100 011122344
Q ss_pred CcceeeccccccCCCCc----cccCCCcccceeeeccccccccC------ChhhccCCCCCeEEeecccccccc-----c
Q 042958 362 NLATLYLYSNSLFDSIP----SELGNLRSLSMLSLGYNKLSGSI------PHSLGNLTNLATLDLYDNSLSGSI-----P 426 (1075)
Q Consensus 362 ~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~-----~ 426 (1075)
+|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+.... +
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 45555555554433222 22234455555555555554321 122345556666666666554211 1
Q ss_pred cccccccccceecccccccccCCCCCC-ccccccccccccCCccccCCC---ccccCcCCCCEEeCCCCcccCCCc--cc
Q 042958 427 SEFGNLRSLSTLSLGYNKLSGSIPHSL-GNLTNLDALYLYDNSLSGSIP---GEIGNLRSISNLALNNNKLSGSIP--QS 500 (1075)
Q Consensus 427 ~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~--~~ 500 (1075)
..+....+|+.|++++|+++ .+|..+ .++++|++|+|++|++++.+| ..++.+++|+.|++++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 12233456666666666665 445444 356666777777776665543 235666677777777777764332 34
Q ss_pred ccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcc
Q 042958 501 LGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQ 580 (1075)
Q Consensus 501 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~ 580 (1075)
++.+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-------------------l~~--------------- 427 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-------------------VKT--------------- 427 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-------------------CCT---------------
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-------------------ccc---------------
Confidence 666777777777777765 456666666666655555555431 110
Q ss_pred cccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchh
Q 042958 581 NQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIP 660 (1075)
Q Consensus 581 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 660 (1075)
.. .++|++|||++|+|++.+ ..+++|++|+|++|+|+ .+|. ...+++|++|||++|++++.+|
T Consensus 428 -----~~------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 428 -----CI------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp -----TS------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred -----hh------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 00 024555555555555421 34555555555555555 3343 3445566666666666666555
Q ss_pred hhhccccccceeecCCCccccCCh
Q 042958 661 SQICIMQSLENLNLSHNSLVGLIP 684 (1075)
Q Consensus 661 ~~~~~~~~L~~L~ls~N~l~~~~p 684 (1075)
..+..+++|+.|++++|++.+..|
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCcccCEEEecCCCccCCCc
Confidence 556666666666666666665555
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-48 Score=481.91 Aligned_cols=458 Identities=22% Similarity=0.264 Sum_probs=375.0
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeec-ccCcccccCCCCCCCC----CCCc--EEEc----------cCcccC-
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDL-SSNLFFGTIPPEIGHL----SYLK--TLQL----------FENQLN- 134 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~l~~l----~~L~--~L~L----------s~n~l~- 134 (1075)
.+++.|+|++|++.|.+|+.|++|++|++|+| ++|.++|..|-..... ..++ .+.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999999999999999999999999 8999988755332111 0000 0000 000000
Q ss_pred ----------CCCCccccccCCcceeeccc--ccccCCCCCCCCCCCCCCEEEcCCCCCCC-----------------CC
Q 042958 135 ----------GSIPYEIGRLSSLNYLALYS--NYLEDLIPPSLGNLSNLDTLHLYDNSLSD-----------------SI 185 (1075)
Q Consensus 135 ----------~~~p~~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~ 185 (1075)
...+........++.+.+.. |.+++ +|..|+++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00111112233455555544 88888 68889999999999999999998 38
Q ss_pred Ccccc--CccccceEeeeccccccccCCCCcCCCCcCceeccccC-CCC-CCcccccCCC-------CCCeEeccCCCCC
Q 042958 186 PSEFG--NLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNS-LFD-SIPSELGNLR-------SLSMLSLGYNKLS 254 (1075)
Q Consensus 186 ~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~Ls~N~l~ 254 (1075)
|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999999999999999999999999998 887 7887766655 9999999999999
Q ss_pred CccCC--CCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcccc-ccceecccccccCCCCc
Q 042958 255 GSIPH--SLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTN-LATLYIHNNSLSGSIPS 331 (1075)
Q Consensus 255 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~ 331 (1075)
.+|. .++++++|++|+|++|.++ .+| .|..+++|+.|+|++|++. .+|..+..+++ |++|+|++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8888 8999999999999999999 778 8999999999999999999 78888999999 999999999999 7888
Q ss_pred ccccccc--cccccccCCcccccCCCcC---C--CCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChh
Q 042958 332 EIGNLRS--LSNLGLSGNKLSGSIPPSL---G--YLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHS 404 (1075)
Q Consensus 332 ~~~~l~~--L~~L~l~~N~l~~~~~~~l---~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 404 (1075)
.+..++. |+.|++++|++++.+|... . .+++|+.|+|++|.+....+..+..+++|+.|+|++|+++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 8887765 9999999999998665432 2 3458999999999997444344558999999999999998 55554
Q ss_pred hcc--------CCCCCeEEeeccccccccccccc--cccccceecccccccccCCCCCCccccccccccccCCccccCCC
Q 042958 405 LGN--------LTNLATLDLYDNSLSGSIPSEFG--NLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIP 474 (1075)
Q Consensus 405 ~~~--------l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 474 (1075)
+.. +++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|+|++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------ 787 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------ 787 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------
Confidence 433 239999999999999 6777776 99999999999999996 78899999999999999998
Q ss_pred ccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCC------c
Q 042958 475 GEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPH------S 548 (1075)
Q Consensus 475 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~------~ 548 (1075)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++...-+. .
T Consensus 788 ------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~ 852 (876)
T 4ecn_A 788 ------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIE 852 (876)
T ss_dssp ------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHH
T ss_pred ------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccccc
Confidence 6789999999999999999999999999999 78888876 6999999999998642222 2
Q ss_pred ccccccCCCccc
Q 042958 549 LGVLDLSSNHIV 560 (1075)
Q Consensus 549 l~~L~Ls~N~l~ 560 (1075)
...+.|+.|.+.
T Consensus 853 ~~~~~L~~n~~~ 864 (876)
T 4ecn_A 853 AGMYVLLYDKTQ 864 (876)
T ss_dssp TTCCEEECCTTS
T ss_pred chheeecCCCcc
Confidence 345666666654
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-47 Score=469.41 Aligned_cols=557 Identities=23% Similarity=0.189 Sum_probs=292.6
Q ss_pred CcCCCCcCCCCCCCCCccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCce
Q 042958 22 LLSSWTLNNVTKTSPCAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKY 101 (1075)
Q Consensus 22 ~l~sw~~~~~~~~~~c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 101 (1075)
.+++|. .+.|..|+...|...+ +.++|++.+|...+..- -+++++|||++|+|++..|..|+++++|++
T Consensus 12 ~~~~~~-----~~~p~~~~~c~~~~~~--~~~~c~~~~l~~vP~~l----p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~ 80 (635)
T 4g8a_A 12 KLAAAN-----SSIPESWEPCVEVVPN--ITYQCMELNFYKIPDNL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQV 80 (635)
T ss_dssp ------------------CCSEEEETT--TEEECTTSCCSSCCSSS----CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhhccc-----CCCCCCCCCccccCCC--CEEECCCCCcCccCCCC----CcCCCEEEeeCCCCCCCCHHHHhCCCCCCE
Confidence 577886 4445557665554333 23578888887654322 136788888888888666667888888888
Q ss_pred eecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCC
Q 042958 102 LDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSL 181 (1075)
Q Consensus 102 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 181 (1075)
|||++|.|++..|.+|.++++|++|+|++|+|++..+..|.++++|++|++++|.++++.+..|+++++|++|+|++|++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 88888888766667778888888888888877755555666666666666666666666665666666666666666666
Q ss_pred CCC-CCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCC
Q 042958 182 SDS-IPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHS 260 (1075)
Q Consensus 182 ~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 260 (1075)
++. .|..++.+++|++|+|++|++++..+..|..+.+++. ....++++.|.+....+..
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTT
T ss_pred ccCCCchhhccchhhhhhcccCccccccccccccchhhhhh--------------------hhhhhhcccCcccccCccc
Confidence 542 3455555666666666666665554444444333221 1123455555555333322
Q ss_pred CcccccccccccccccCcCC-CCcccCCCccCcEEEccCCCC------CCCcCCCCCccccccceecccccccCCCCccc
Q 042958 261 LGNLTNLATLYLYENSLSGS-IPSEFGNLRSLSMLNLGYNKL------NGIIPHSLGNLTNLATLYIHNNSLSGSIPSEI 333 (1075)
Q Consensus 261 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 333 (1075)
+. ...++.+++.+|..+.. .+..+..+..++...+..+.. .......+..+..+....+..+......
T Consensus 221 ~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 295 (635)
T 4g8a_A 221 FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL---- 295 (635)
T ss_dssp TT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE----
T ss_pred cc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc----
Confidence 22 23345555555543321 223344455555544433222 2222233444444444444433322110
Q ss_pred ccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCe
Q 042958 334 GNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLAT 413 (1075)
Q Consensus 334 ~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 413 (1075)
...+..+....+++.+.+.+|.+... ..+....+|+.|++++|.+.+..+. .+..|+.
T Consensus 296 -----------------~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~ 353 (635)
T 4g8a_A 296 -----------------DGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKR 353 (635)
T ss_dssp -----------------EECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCE
T ss_pred -----------------cchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhh
Confidence 01122233334444444444444222 1223334455555555555433221 2344555
Q ss_pred EEeeccccccccccccccccccceeccccccccc--CCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCC
Q 042958 414 LDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSG--SIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNN 491 (1075)
Q Consensus 414 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 491 (1075)
+++++|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|
T Consensus 354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTS
T ss_pred cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhc
Confidence 55555555422 223345556666666665532 233444455666666666666653 4445666666666766666
Q ss_pred cccCCC-cccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhhhh
Q 042958 492 KLSGSI-PQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKL 570 (1075)
Q Consensus 492 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~ 570 (1075)
.+.... +..+.++++++.+++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~---------------------------- 482 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------------- 482 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG----------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc----------------------------
Confidence 554433 334666777777777777665555555554444444444443321
Q ss_pred hHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeee
Q 042958 571 NFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDL 650 (1075)
Q Consensus 571 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 650 (1075)
.+..|..|..+++|++|||++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|||
T Consensus 483 -------------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 483 -------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp -------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred -------------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 1123344555566666666666666555666666666666666666666555555555555555555
Q ss_pred ccccccCchhhhhccc-cccceeecCCCccc
Q 042958 651 SHNFLREAIPSQICIM-QSLENLNLSHNSLV 680 (1075)
Q Consensus 651 s~N~l~~~~~~~~~~~-~~L~~L~ls~N~l~ 680 (1075)
++|+|++..|..+..+ ++|+.|++++|++.
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 5555555555555444 34555555555544
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-48 Score=463.18 Aligned_cols=457 Identities=21% Similarity=0.270 Sum_probs=299.1
Q ss_pred CEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCC
Q 042958 172 DTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYN 251 (1075)
Q Consensus 172 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 251 (1075)
++|++++|+++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 467777777774 444444 67777777777777655566777777777777777776666666777777777777777
Q ss_pred CCCCccCCCCcccccccccccccccCcC-CCCcccCCCccCcEEEccCCCCCCCcCCCCCccccc--cceecccccc--c
Q 042958 252 KLSGSIPHSLGNLTNLATLYLYENSLSG-SIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNL--ATLYIHNNSL--S 326 (1075)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~ 326 (1075)
+++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..|..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 776 34444 56666666666666665 245666666666666666666653 234455555 6666666665 4
Q ss_pred CCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCcc-ccCCCcccceeeecccc-------cc
Q 042958 327 GSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPS-ELGNLRSLSMLSLGYNK-------LS 398 (1075)
Q Consensus 327 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~-------l~ 398 (1075)
+..|..+..+.. ....+++++|.+.+.++. .+.++++|+.|++++|. +.
T Consensus 154 ~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 KEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp SCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred cccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 444544444331 122334444444443332 34556666666666665 44
Q ss_pred ccCChhhccCCCCCeEEeeccccccccccccc---cccccceecccccccccCCCCCC-----ccccccccccccCCccc
Q 042958 399 GSIPHSLGNLTNLATLDLYDNSLSGSIPSEFG---NLRSLSTLSLGYNKLSGSIPHSL-----GNLTNLDALYLYDNSLS 470 (1075)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~ 470 (1075)
+.+| .++.+++|+.|++++|.+++..+..+. ..++|++|++++|++++.+|..+ +++++|+.+++++|.+
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 4444 566777777777777766643322211 13477777777777777777777 7777888888888877
Q ss_pred cCCC-ccccCc---CCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccC
Q 042958 471 GSIP-GEIGNL---RSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIP 546 (1075)
Q Consensus 471 ~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 546 (1075)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|+.|++++|++++..|..++.+++|+.|++++|++++
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--- 362 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE--- 362 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB---
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc---
Confidence 344 445444 56888888888775432 12577788888888888877777777777777666666665541
Q ss_pred CcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccc-cccccccceEEE
Q 042958 547 HSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPK-SFGNLVKLHYLN 625 (1075)
Q Consensus 547 ~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ 625 (1075)
++ .+|..+..+++|++|||++|++++.+|. .|..+++|++|+
T Consensus 363 ----------------l~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 363 ----------------LS---------------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp ----------------HH---------------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ----------------cc---------------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 00 1234456677788888888888764554 377778888888
Q ss_pred ccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhcccccccEEeecCCccCC
Q 042958 626 LSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLLRIDISYNELQG 705 (1075)
Q Consensus 626 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~N~~~~ 705 (1075)
+++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++|+.|++++|+|++..+..|..++.|+.|++++|+++|
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 888888776666654 67888888888887 577777788888888888888885444447888888888888888887
Q ss_pred CCC
Q 042958 706 PIP 708 (1075)
Q Consensus 706 ~~p 708 (1075)
.++
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 765
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-48 Score=466.81 Aligned_cols=450 Identities=22% Similarity=0.208 Sum_probs=310.2
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45666777666 5666555 66777777777776555566677777777777777776666666777777777777777
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCC-CCCccccCccccceEeeeccccccccCCCCcCCCCc--CceeccccCC--C
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSD-SIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNL--ATLYLHNNSL--F 230 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~~L~L~~N~l--~ 230 (1075)
.++.+++. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 77654332 67777777777777776 356777777777777777777764 345566666 7777777777 6
Q ss_pred CCCcccccCCC-CCCeEeccCCCCCCccC-CCCccccccccccccccc-------CcCCCCcccCCCccCcEEEccCCCC
Q 042958 231 DSIPSELGNLR-SLSMLSLGYNKLSGSIP-HSLGNLTNLATLYLYENS-------LSGSIPSEFGNLRSLSMLNLGYNKL 301 (1075)
Q Consensus 231 ~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l 301 (1075)
+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 66666666554 33456677777766444 356677777888877776 555444 667777778887777776
Q ss_pred CCCcCCCCC---ccccccceecccccccCCCCccc-----ccccccccccccCCcccccCC-CcCCCC---CCcceeecc
Q 042958 302 NGIIPHSLG---NLTNLATLYIHNNSLSGSIPSEI-----GNLRSLSNLGLSGNKLSGSIP-PSLGYL---SNLATLYLY 369 (1075)
Q Consensus 302 ~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~-~~l~~l---~~L~~L~L~ 369 (1075)
.+..+..+. .+++|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 643221111 13477778888888777777777 7777778888877777 344 334333 567788888
Q ss_pred ccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeecccccc--ccccccccccccceeccccccccc
Q 042958 370 SNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSG--SIPSEFGNLRSLSTLSLGYNKLSG 447 (1075)
Q Consensus 370 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 447 (1075)
+|.+.... .+..+++|++|++++|++++..|..++.+++|++|++++|++++ ..|..|+.+++|++|++++|++++
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 88774332 12567778888888888877777778888888888888888875 345667788888888888888876
Q ss_pred CCCC-CCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCc-cc
Q 042958 448 SIPH-SLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPS-EL 525 (1075)
Q Consensus 448 ~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l 525 (1075)
.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +|. .+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHh
Confidence 4444 477778888888888888776666554 67888888888887 667766788888888888888874 444 37
Q ss_pred cCcccccccccccccccc
Q 042958 526 GNLRSLSMLSFAYNKLSG 543 (1075)
Q Consensus 526 ~~l~~L~~L~l~~N~l~~ 543 (1075)
..+++|+.|++++|.+++
T Consensus 465 ~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccCCcccEEECcCCCCcc
Confidence 777777777777766653
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-46 Score=460.13 Aligned_cols=538 Identities=22% Similarity=0.198 Sum_probs=344.4
Q ss_pred ceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCC
Q 042958 100 KYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDN 179 (1075)
Q Consensus 100 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (1075)
++.+.++-+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34566666776 6776553 47888888888888666677888888888888888888877777888888888888888
Q ss_pred CCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC-CcccccCCCCCCeEeccCCCCCCccC
Q 042958 180 SLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS-IPSELGNLRSLSMLSLGYNKLSGSIP 258 (1075)
Q Consensus 180 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 258 (1075)
+|++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++. .|..++.+++|++|++++|++++..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 88777777788888888888888888766666777788888888888877653 46667777778888888777776666
Q ss_pred CCCccccccc----ccccccccCcCCCCcccCCCccCcEEEccCCCCCC-CcCCCCCccccccceecccccccCCCCccc
Q 042958 259 HSLGNLTNLA----TLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNG-IIPHSLGNLTNLATLYIHNNSLSGSIPSEI 333 (1075)
Q Consensus 259 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 333 (1075)
..|..+.+++ .++++.|.++...+..+. ...++.+++.+|.... ..+..+..+..++...+..+....
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~------ 263 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------ 263 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT------
T ss_pred ccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc------
Confidence 6666555443 344555555543333332 2334455555544331 111223333333333322221110
Q ss_pred ccccccccccccCCcccccCCCcCCCCCCcceeeccccccCC---CCccccCCCcccceeeeccccccccCChhhccCCC
Q 042958 334 GNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFD---SIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTN 410 (1075)
Q Consensus 334 ~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 410 (1075)
...+.......+..+..+....+..+.... ..+..+..+.+++.+++.+|.+.... .+....+
T Consensus 264 ------------~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~ 329 (635)
T 4g8a_A 264 ------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG 329 (635)
T ss_dssp ------------SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCC
T ss_pred ------------ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchh
Confidence 001111122223333334333333332211 12223344455566666666554322 2344455
Q ss_pred CCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCcccc--CCCccccCcCCCCEEeC
Q 042958 411 LATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSG--SIPGEIGNLRSISNLAL 488 (1075)
Q Consensus 411 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L 488 (1075)
|+.|++++|.+....+ ..+..|+.+++.+|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+.+++
T Consensus 330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 6666666665554332 2334555555555555422 223345555555555555532 23334444555555555
Q ss_pred CCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhh
Q 042958 489 NNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELG 568 (1075)
Q Consensus 489 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~ 568 (1075)
+.|.+.. .+..+..+++|+.+++++|......+ +..+.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-----------------------------------------~~~~~ 442 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------------------------FSVFL 442 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS-----------------------------------------SCTTT
T ss_pred ccccccc-ccccccccccccchhhhhcccccccc-----------------------------------------ccccc
Confidence 5555442 33344445555555554444332221 12233
Q ss_pred hhhHhHHHhhcccccccccccccCcccccceeecCCCcc-cCcccccccccccceEEEccccccccccchhcccccccce
Q 042958 569 KLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRL-SNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSE 647 (1075)
Q Consensus 569 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 647 (1075)
.+..++.++++.|++++..+..+..++.|+.|+|++|.+ .+.+|..|..+++|++|+|++|+|++..|..|..+++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 344445555555666666667788889999999999975 4467889999999999999999999999999999999999
Q ss_pred eeeccccccCchhhhhccccccceeecCCCccccCChhhhccc-ccccEEeecCCccCCCCC
Q 042958 648 LDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKM-HGLLRIDISYNELQGPIP 708 (1075)
Q Consensus 648 L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~l~~s~N~~~~~~p 708 (1075)
|+|++|+|++..|..+..+++|+.|||++|+|++.+|..|..+ ++|+.|++++|+|+|.+.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999999999999998 579999999999999875
No 23
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=408.62 Aligned_cols=249 Identities=23% Similarity=0.395 Sum_probs=190.6
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.++||+|+||+||+|+++ ..||||+++.... .....++|.+|++++++++|||||+++|+|.+....+++.
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEE
Confidence 467788899999999999999875 3699999875433 3445678999999999999999999999997655444443
Q ss_pred ecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC--
Q 042958 894 LSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS-- 963 (1075)
Q Consensus 894 ~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~-- 963 (1075)
+...+ ....++|.++.+|+.|||+||+|||+. +||||||||+|||+++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred cCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 33221 235689999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeccccccCccCcccccc---CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 964 SNWTELAGTYGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||......... ..........+..+ ..
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~---~~~~~~~~~~p~~~---~~ 262 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI---IFMVGRGYASPDLS---KL 262 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH---HHHHHTTCCCCCST---TS
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHH---HHHHhcCCCCCCcc---cc
Confidence 23445689999999999864 35899999999999999999999999754321111 11111122222222 22
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+++.++.+++.+||+.||++||||+||++.|+
T Consensus 263 ~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le 296 (307)
T 3omv_A 263 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 3345567999999999999999999999998875
No 24
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=4.9e-46 Score=409.03 Aligned_cols=242 Identities=21% Similarity=0.341 Sum_probs=190.5
Q ss_pred CCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 816 DFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 816 ~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
++++.+.||+|+||+||+|.+. +++.||||+++.... ....++|.+|+.++++++|||||+++|+|.+.+..
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~--~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE--GPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC--C-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC--hHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 4556688999999999999763 468899999975432 23357899999999999999999999999875543
Q ss_pred hh-heecCc-----------------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC
Q 042958 890 LA-MILSNN-----------------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD 945 (1075)
Q Consensus 890 l~-~~~~~~-----------------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~ 945 (1075)
+. +.+... .....++|.++.+|+.|||+||+|||+. +||||||||+|||++++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCC
Confidence 22 111111 0124589999999999999999999999 99999999999999999
Q ss_pred CCceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhh
Q 042958 946 NEAHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNL 1022 (1075)
Q Consensus 946 ~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~ 1022 (1075)
+.+||+|||+|+....... ......||++|||||++.+..|+.++|||||||++|||+| |+.||......
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~------- 254 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ------- 254 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH-------
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH-------
Confidence 9999999999987654322 2345679999999999999999999999999999999998 89999754321
Q ss_pred hhhhhhccCCC-CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1023 NIALDEMLDPR-LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1023 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.....+.... .+.+ .+++..+.+++.+||+.||++||||+||++.|+
T Consensus 255 -~~~~~i~~~~~~~~p----~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~ 302 (308)
T 4gt4_A 255 -DVVEMIRNRQVLPCP----DDCPAWVYALMIECWNEFPSRRPRFKDIHSRLR 302 (308)
T ss_dssp -HHHHHHHTTCCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -HHHHHHHcCCCCCCc----ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 1122222222 2222 234556999999999999999999999999885
No 25
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=4.4e-46 Score=407.59 Aligned_cols=242 Identities=23% Similarity=0.416 Sum_probs=190.2
Q ss_pred cCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
++|.+.+.||+|+||+||+|++. +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+.+.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 89 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP 89 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE
Confidence 56778899999999999999764 4788999999753 33456789999999999999999999999987654
Q ss_pred chh-heecCc--------------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC
Q 042958 889 SLA-MILSNN--------------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE 947 (1075)
Q Consensus 889 ~l~-~~~~~~--------------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~ 947 (1075)
.+. +.+... .....++|.++++|+.|||+||+|||++ +||||||||+|||+++++.
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~ 166 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLL 166 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCc
Confidence 322 222111 1124689999999999999999999999 9999999999999999999
Q ss_pred ceEeccccccccCCCCCce--eccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhh
Q 042958 948 AHVSDFGIAKFLKPDSSNW--TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNI 1024 (1075)
Q Consensus 948 ~kl~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 1024 (1075)
+||+|||+|+......... ....||+.|||||++.+..|+.++|||||||++|||+| |+.||......+
T Consensus 167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~-------- 238 (299)
T 4asz_A 167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE-------- 238 (299)
T ss_dssp EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--------
T ss_pred EEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH--------
Confidence 9999999998765433222 23468999999999999999999999999999999998 999997543211
Q ss_pred hhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1025 ALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1025 ~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+... ..+.| ..++.++.+++.+||+.||++||||+||.+.|+
T Consensus 239 ~~~~i~~~~~~~~p----~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~ 285 (299)
T 4asz_A 239 VIECITQGRVLQRP----RTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQ 285 (299)
T ss_dssp HHHHHHHTCCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCC----ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 11222222 22222 233456999999999999999999999998875
No 26
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=407.46 Aligned_cols=242 Identities=26% Similarity=0.423 Sum_probs=184.9
Q ss_pred cCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
++|...++||+|+||+||+|+++ +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+.+.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence 45667789999999999999764 4789999999753 34456789999999999999999999999987654
Q ss_pred chhh-eecCcc----------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC
Q 042958 889 SLAM-ILSNNA----------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD 945 (1075)
Q Consensus 889 ~l~~-~~~~~~----------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~ 945 (1075)
.+.+ .+...+ ....++|.++++|+.|||+||+|||+. +||||||||+|||++++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~ 194 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQG 194 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETT
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCC
Confidence 3222 211111 124589999999999999999999999 99999999999999999
Q ss_pred CCceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhh
Q 042958 946 NEAHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNL 1022 (1075)
Q Consensus 946 ~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~ 1022 (1075)
+.+||+|||+|+....... ......||+.|||||++.+..++.++|||||||++|||+| |+.||......+
T Consensus 195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~------ 268 (329)
T 4aoj_A 195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE------ 268 (329)
T ss_dssp TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH------
T ss_pred CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH------
Confidence 9999999999987654332 2334679999999999999999999999999999999999 999997543211
Q ss_pred hhhhhhccC-CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1023 NIALDEMLD-PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1023 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+.. .+++.|. .++.++.+++.+||+.||++||||+||++.|+
T Consensus 269 --~~~~i~~g~~~~~p~----~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~ 315 (329)
T 4aoj_A 269 --AIDCITQGRELERPR----ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQ 315 (329)
T ss_dssp --HHHHHHHTCCCCCCT----TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHH
T ss_pred --HHHHHHcCCCCCCcc----cccHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 1111111 2233322 33456999999999999999999999999875
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-44 Score=439.43 Aligned_cols=454 Identities=22% Similarity=0.212 Sum_probs=246.5
Q ss_pred eEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccC
Q 042958 51 NSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFE 130 (1075)
Q Consensus 51 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 130 (1075)
..++|+++++++. |.. + .++|++|||++|.+++..|..++.+++|++|+|++|.+++..|..|+++++|++|||++
T Consensus 34 ~~l~ls~~~L~~i-p~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHV-PKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSC-CTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccC-CCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 5667777777653 322 2 26677777777777766666777777777777777777766667777777777777777
Q ss_pred cccCCCCCccccccCCcceeecccccccCCC-CCCCCCCCCCCEEEcCCCCCCCCCCccccCcccc--ceEeeecccc--
Q 042958 131 NQLNGSIPYEIGRLSSLNYLALYSNYLEDLI-PPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSL--SMLSLGYNKF-- 205 (1075)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~N~l-- 205 (1075)
|+++ .+|.. .+++|++|++++|.++++. |..|+++++|++|++++|++++. .|..+++| ++|++++|++
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 7776 45544 5666666666666666543 45566666666666666666542 23333444 6666666665
Q ss_pred ccccCCCCcCCC-CcCceeccccCCCCCCcc-cccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCc
Q 042958 206 SGSIPHSLGNLT-NLATLYLHNNSLFDSIPS-ELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPS 283 (1075)
Q Consensus 206 ~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 283 (1075)
++..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|+.... .+.+ ...
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~-~~~ 243 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMT-FLS 243 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHH-HHH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHH-HHH
Confidence 555555555443 111345555555443332 234455555555555531100 0111 111
Q ss_pred ccCCCccCcEEEccCCCCCCCc----CCCCCccccccceecccccccCCCCccc-----ccccccccccccCCcccccCC
Q 042958 284 EFGNLRSLSMLNLGYNKLNGII----PHSLGNLTNLATLYIHNNSLSGSIPSEI-----GNLRSLSNLGLSGNKLSGSIP 354 (1075)
Q Consensus 284 ~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~ 354 (1075)
.|..+++|+.|+++++.+.+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+|
T Consensus 244 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp HHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred HHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 2333444444444444333210 0000 11245555555555554444444 3444444444444443 122
Q ss_pred -CcCCC---CCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccc--cccc
Q 042958 355 -PSLGY---LSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGS--IPSE 428 (1075)
Q Consensus 355 -~~l~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~ 428 (1075)
..+.. ..+|++|++++|.+.... ....+++|++|++++|++++..|..++.+++|++|++++|++++. .|..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh
Confidence 11111 134566666666553221 114556666666666666665666666666666666666666642 2345
Q ss_pred cccccccceecccccccccCCC-CCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCcc
Q 042958 429 FGNLRSLSTLSLGYNKLSGSIP-HSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNL 507 (1075)
Q Consensus 429 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 507 (1075)
|.++++|++|++++|++++.+| ..+..+++|++|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 6666666666666666665333 3466666666666666666655554443 56667777777666 455555566777
Q ss_pred ceeeccCCCCCCCCCcc-ccCcccccccccccccccc
Q 042958 508 VILYLYNNSLFDSIPSE-LGNLRSLSMLSFAYNKLSG 543 (1075)
Q Consensus 508 ~~L~L~~N~l~~~~~~~-l~~l~~L~~L~l~~N~l~~ 543 (1075)
+.|+|++|++++ +|.. +..+++|+.|++++|.+++
T Consensus 476 ~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 476 QELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCC
Confidence 777777777663 3333 6666666666666665543
No 28
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.4e-44 Score=399.99 Aligned_cols=241 Identities=25% Similarity=0.370 Sum_probs=195.6
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
+.|+..+.||+|+||+||+|..+ +|+.||||++....... .+.+.+|++++++++|||||+++++|.+.+.. +++
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~-~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDEL-WVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEE-EEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE-EEE
Confidence 56888899999999999999664 79999999986543222 35688999999999999999999999876543 333
Q ss_pred ecCccc--------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 894 LSNNAA--------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 894 ~~~~~~--------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
+++..+ ...+++.+...++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+......
T Consensus 150 mEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 226 (346)
T 4fih_A 150 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226 (346)
T ss_dssp ECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred EeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc
Confidence 332221 35689999999999999999999999 9999999999999999999999999999988766666
Q ss_pred eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHH
Q 042958 966 WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKL 1045 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1075)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||....... ....+.....+.++ .....+
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-----~~~~i~~~~~~~~~----~~~~~s 297 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-----AMKMIRDNLPPRLK----NLHKVS 297 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HHHHHHHSSCCCCS----CGGGSC
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-----HHHHHHcCCCCCCC----ccccCC
Confidence 677899999999999999999999999999999999999999997432211 11111222222222 223445
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1046 ISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1046 ~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.++.+++.+||++||++|||++|+++
T Consensus 298 ~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 298 PSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 67999999999999999999999976
No 29
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.5e-45 Score=406.51 Aligned_cols=241 Identities=21% Similarity=0.303 Sum_probs=188.5
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||+||+|+. .+|+.||||++...... ....+.+.+|++++++++|||||++++++.+.+..+ ++
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~y-iV 101 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENGSLY-IV 101 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE-EE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEE-EE
Confidence 6899999999999999999965 57999999999765433 334678999999999999999999999998765432 22
Q ss_pred ecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 894 LSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 894 ~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+++.. ....+++.+.+.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+...
T Consensus 102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 32221 123468889999999999999999999 9999999999999999999999999999976543
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.....+.. ..
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--------~~~~~~i~~~~~~~~---~~ 247 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM--------KNLVLKIISGSFPPV---SL 247 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--------HHHHHHHHHTCCCCC---CT
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--------HHHHHHHHcCCCCCC---Cc
Confidence 3334556899999999999999999999999999999999999999974322 112222222232221 12
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+.++.+++.+||++||++|||++|+++
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 248 HYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 33456999999999999999999999975
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-44 Score=436.74 Aligned_cols=436 Identities=21% Similarity=0.215 Sum_probs=309.3
Q ss_pred CceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEE
Q 042958 48 GRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQ 127 (1075)
Q Consensus 48 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 127 (1075)
.+++.++++++.+.+..+. .|+++++|++|+|++|.+++..|..++.+++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4789999999999876544 4999999999999999999888999999999999999999998 67777 899999999
Q ss_pred ccCcccCC-CCCccccccCCcceeecccccccCCCCCCCCCCCCC--CEEEcCCCCC--CCCCCccccCcc-ccceEeee
Q 042958 128 LFENQLNG-SIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNL--DTLHLYDNSL--SDSIPSEFGNLR-SLSMLSLG 201 (1075)
Q Consensus 128 Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~Ls 201 (1075)
|++|++++ .+|..|+.+++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..|..+. ..-.++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99999996 4578999999999999999999874 35555555 9999999999 888888888765 22266889
Q ss_pred ccccccccCC-CCcCCCCcCceeccccCCC----CCCcccccCCCCCCeEeccCCCCCCcc----CCCCccccccccccc
Q 042958 202 YNKFSGSIPH-SLGNLTNLATLYLHNNSLF----DSIPSELGNLRSLSMLSLGYNKLSGSI----PHSLGNLTNLATLYL 272 (1075)
Q Consensus 202 ~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L 272 (1075)
.|.+.+.++. .+..+++|+.|++++|+.. ......+..+++|+.|+++++.+.+.. +..+ ..++|++|++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l 283 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNI 283 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEE
Confidence 9998875553 4667899999999998621 012235677888888888877665321 1111 1125666666
Q ss_pred ccccCcCCCCccc-----CCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccc---cccccccc
Q 042958 273 YENSLSGSIPSEF-----GNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNL---RSLSNLGL 344 (1075)
Q Consensus 273 ~~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l 344 (1075)
++|.+++.+|..+ ..++.|+.++++.|.+ .+| ...+..+ .+|+.|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p-----------------------~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS-----------------------KEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC-----------------------HHHHHHHHHTCCCSEEEE
T ss_pred eccEeeccccchhhhcccccchheehhhccccee--ecC-----------------------hhhhhhhhccCcceEEEc
Confidence 6666665555544 3444444444444443 111 1111111 34555556
Q ss_pred cCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeecccccccc--CChhhccCCCCCeEEeeccccc
Q 042958 345 SGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGS--IPHSLGNLTNLATLDLYDNSLS 422 (1075)
Q Consensus 345 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~ 422 (1075)
++|.+.... ....+++|++|++++|.+.+..|..+.++++|++|++++|++++. .|..+..+++|++|++++|+++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 655554211 124556666677777766666666666777777777777777652 2355677777777777777777
Q ss_pred c-ccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccc
Q 042958 423 G-SIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSL 501 (1075)
Q Consensus 423 ~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 501 (1075)
+ ..+..|..+++|++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..+
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 493 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTST
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHH
Confidence 6 3344577777777777777777766665554 57788888888887 566666678888888888888874333337
Q ss_pred cCCCccceeeccCCCCCCCC
Q 042958 502 GNLSNLVILYLYNNSLFDSI 521 (1075)
Q Consensus 502 ~~l~~L~~L~L~~N~l~~~~ 521 (1075)
..+++|+.|++++|++.+..
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCH
T ss_pred hcCCCCCEEEecCCCcCCCc
Confidence 88888888888888876543
No 31
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2e-44 Score=387.56 Aligned_cols=240 Identities=22% Similarity=0.329 Sum_probs=178.4
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||+||+|.. .+|+.||||++.+.........+.+.+|++++++++|||||++++++.+.+..+ ++
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~-iv 91 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEII-MV 91 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-EE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE-EE
Confidence 6899999999999999999965 479999999997655444445678999999999999999999999998765533 33
Q ss_pred ecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 894 LSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 894 ~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
++..+ ....+++.+...++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+|+..... ..
T Consensus 92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-~~ 167 (275)
T 3hyh_A 92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-NF 167 (275)
T ss_dssp EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC-Cc
Confidence 32221 245689999999999999999999999 9999999999999999999999999999876543 33
Q ss_pred eeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHH
Q 042958 966 WTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDK 1044 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1075)
....+||+.|||||++.+..+ +.++||||+||++|||++|+.||..... ......+.....+.+. ..
T Consensus 168 ~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--------~~~~~~i~~~~~~~p~----~~ 235 (275)
T 3hyh_A 168 LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--------PVLFKNISNGVYTLPK----FL 235 (275)
T ss_dssp -------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCT----TS
T ss_pred cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHcCCCCCCC----CC
Confidence 455789999999999998886 5799999999999999999999974321 1112222222322222 23
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1045 LISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1045 ~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+.++.+++.+|+++||++|||++|+++
T Consensus 236 s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 236 SPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 346899999999999999999999986
No 32
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.4e-44 Score=393.72 Aligned_cols=240 Identities=22% Similarity=0.289 Sum_probs=193.1
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||+||+|+. .+|+.||||++.+.........+.+.+|++++++++|||||++++++.+.+.. +++
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~-yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKL-YFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE-EEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE-EEE
Confidence 5799999999999999999965 57999999998643222223357899999999999999999999999876543 333
Q ss_pred ecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC-
Q 042958 894 LSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS- 963 (1075)
Q Consensus 894 ~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~- 963 (1075)
+++.. ....+++.+...++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 111 mEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 33322 235689999999999999999999999 99999999999999999999999999999876443
Q ss_pred -CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 964 -SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 964 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+....+..+.
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------~~~~~~i~~~~~~~p~---- 255 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--------GLIFAKIIKLEYDFPE---- 255 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCT----
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCc----
Confidence 234567899999999999999999999999999999999999999974322 1122223323332222
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVS 1070 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl 1070 (1075)
..+.++.+++.+|+++||++|||++|+.
T Consensus 256 ~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 256 KFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp TCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 2334689999999999999999999864
No 33
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=400.43 Aligned_cols=241 Identities=25% Similarity=0.371 Sum_probs=196.1
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
+.|+..+.||+|+||.||+|.. .+|+.||||++....... .+.+.+|+.+|++++|||||+++++|.+.+.. +++
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~-~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDEL-WVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEE-EEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEE-EEE
Confidence 5699999999999999999966 479999999997643332 35688999999999999999999999876543 333
Q ss_pred ecCccc--------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 894 LSNNAA--------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 894 ~~~~~~--------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
+++..+ ...+++.+...|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+......
T Consensus 227 mEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 303 (423)
T 4fie_A 227 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 303 (423)
T ss_dssp EECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC
T ss_pred EeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc
Confidence 333221 34689999999999999999999999 9999999999999999999999999999988766666
Q ss_pred eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHH
Q 042958 966 WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKL 1045 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1075)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||....... ....+.....+.+..+ ...+
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-----~~~~i~~~~~~~~~~~----~~~s 374 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-----AMKMIRDNLPPRLKNL----HKVS 374 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HHHHHHHSCCCCCSCT----TSSC
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-----HHHHHHcCCCCCCccc----ccCC
Confidence 677899999999999999999999999999999999999999997433211 1111222222222222 2334
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1046 ISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1046 ~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.++.+++.+||++||++|||++|+++
T Consensus 375 ~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 375 PSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 56899999999999999999999976
No 34
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.1e-44 Score=386.39 Aligned_cols=240 Identities=22% Similarity=0.351 Sum_probs=184.2
Q ss_pred CCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc---ccchhhe
Q 042958 818 DDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV---RHSLAMI 893 (1075)
Q Consensus 818 ~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---~~~l~~~ 893 (1075)
+..++||+|+||+||+|.. .+++.||||++...... ....+.|.+|++++++++|||||+++++|... +..++++
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 4557899999999999965 47899999998754332 33467899999999999999999999998652 2223333
Q ss_pred ecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC-CCCceEeccccccccCCCC
Q 042958 894 LSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF-DNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 894 ~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~DfGla~~~~~~~ 963 (1075)
++... ....+++..+..|+.||+.||+|||++. ++|+||||||+|||++. ++.+||+|||+|+....
T Consensus 108 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~-- 184 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA-- 184 (290)
T ss_dssp EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT--
T ss_pred EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCC--
Confidence 33322 2356899999999999999999999981 13999999999999984 78999999999986432
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
......+||+.|||||++.+ +|+.++|||||||++|||+||+.||....... .....+.....+ ......
T Consensus 185 ~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~-------~~~~~i~~~~~~--~~~~~~ 254 (290)
T 3fpq_A 185 SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA-------QIYRRVTSGVKP--ASFDKV 254 (290)
T ss_dssp TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH-------HHHHHHTTTCCC--GGGGGC
T ss_pred CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH-------HHHHHHHcCCCC--CCCCcc
Confidence 33456789999999998865 69999999999999999999999996432211 111122221111 111222
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.++++.+++.+||++||++|||++|+++
T Consensus 255 ~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 255 AIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 3456899999999999999999999986
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3e-43 Score=412.17 Aligned_cols=425 Identities=25% Similarity=0.285 Sum_probs=242.5
Q ss_pred CCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 71 SFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
..++|++|++++|++ |.+|++++++++|++|++++|.+.|.+|.+++++++|+.++++.|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 468899999999999 79999999999999999999999999999999999886666655532 346666
Q ss_pred ecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCC
Q 042958 151 ALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (1075)
++++|.+++++. -.++|++|++++|++++ +|.. +++|++|++++|++++ ++.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 666666666432 13567777777777776 4432 3667777777777763 2221 157777777777776
Q ss_pred CCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG 310 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 310 (1075)
+ +| .|+.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .|+.+++|+.|++++|++++ +|...
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 5 55 47777777777777777774 45433 367777777777775 45 57777778888888777775 33322
Q ss_pred ccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCccccee
Q 042958 311 NLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSML 390 (1075)
Q Consensus 311 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 390 (1075)
++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. .++|++|++++|++.+ +|.. +++|++|
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 47777788888777 455 37777788888888887774 4432 3678888888888754 4443 3678888
Q ss_pred eeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccc
Q 042958 391 SLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLS 470 (1075)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 470 (1075)
++++|++++. |.. .++|++|++++|++++. +.. .++|++|++++|++++ +|.. +++|++|++++|+++
T Consensus 283 ~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 8888888752 211 15788888888888752 211 2478888888888885 5544 477888888888888
Q ss_pred cCCCccccCcCCCCEEeCCCCcccC--CCcccccCCCccceeeccCCCCCCCCCccccCcccccccccccccccc--ccC
Q 042958 471 GSIPGEIGNLRSISNLALNNNKLSG--SIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSG--SIP 546 (1075)
Q Consensus 471 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p 546 (1075)
.+|. .+++|+.|++++|++++ .+|..++. |+.|.+.+.+|.. +++|+.|++++|.+++ .+|
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccch
Confidence 4565 46788888888888887 56665543 2346666666663 4778888889998887 788
Q ss_pred CcccccccCCCccccccchhhh
Q 042958 547 HSLGVLDLSSNHIVGEIPTELG 568 (1075)
Q Consensus 547 ~~l~~L~Ls~N~l~~~~p~~~~ 568 (1075)
.+++.|.+.+|.+.+.++.+..
T Consensus 416 ~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 416 ESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp ----------------------
T ss_pred hhHhheeCcCcccCCccccCHH
Confidence 8888888888888776655543
No 36
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=5.2e-44 Score=399.83 Aligned_cols=252 Identities=23% Similarity=0.364 Sum_probs=197.0
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCc-CceeeEE
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRH-RNIVKFY 880 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~ 880 (1075)
.+++...++|++.+.||+|+||+||+|.+. +++.||||++.... .....++|.+|++++++++| ||||+++
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~--~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--ChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 455556788999999999999999999754 23689999997543 23345789999999999965 8999999
Q ss_pred EEeeccccchhheecCccc-------------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecC
Q 042958 881 GFCSHVRHSLAMILSNNAA-------------------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDI 935 (1075)
Q Consensus 881 ~~~~~~~~~l~~~~~~~~~-------------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 935 (1075)
|+|......+.+++++... ...++|.++..++.|||+||+|||++ +||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCcc
Confidence 9997655433333322111 23489999999999999999999999 9999999
Q ss_pred CCCCeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCcc
Q 042958 936 SSKNVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFI 1012 (1075)
Q Consensus 936 k~~Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~ 1012 (1075)
||+|||+++++.+||+|||+|+.+..+... .....||+.|||||++.+..|+.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999977654332 334678999999999999999999999999999999998 99999754
Q ss_pred CccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1013 SSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..... ....+.. ..+++.|. .++.++.+++.+||+.||++||||+||++.|+
T Consensus 292 ~~~~~----~~~~i~~--g~~~~~p~----~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~ 343 (353)
T 4ase_A 292 KIDEE----FCRRLKE--GTRMRAPD----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 343 (353)
T ss_dssp CCSHH----HHHHHHH--TCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CHHHH----HHHHHHc--CCCCCCCc----cCCHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 32211 1111111 12223222 23446999999999999999999999998874
No 37
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.6e-43 Score=390.48 Aligned_cols=254 Identities=21% Similarity=0.289 Sum_probs=185.2
Q ss_pred cCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc---chh
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---SLA 891 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---~l~ 891 (1075)
++|...+.||+|+||+||+|+++ |+.||||++... ......++.|+..+.+++|||||+++|+|.+... .++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~----~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECcc----chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 35677789999999999999885 999999998642 2222334556777788999999999999986542 122
Q ss_pred heecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 892 MILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDC-----FPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 892 ~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+++++.. ....++|.++.+++.|+++||+|||+++ .++||||||||+|||++.++++||+|||+|+.
T Consensus 78 lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred EEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence 2222221 1356899999999999999999999862 35899999999999999999999999999987
Q ss_pred cCCCCCc----eeccccccCccCccccccC------CCCcccchHhHHHHHHHHHhCCCCCCccCccccc-------hhh
Q 042958 959 LKPDSSN----WTELAGTYGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSS-------SLN 1021 (1075)
Q Consensus 959 ~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~-------~~~ 1021 (1075)
....... ....+||+.|||||++.+. .++.++|||||||++|||+||+.||......... ...
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence 7654332 2345799999999998764 4678999999999999999998887543221110 001
Q ss_pred hhhhhhhcc----CCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1022 LNIALDEML----DPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1022 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.......+. .+.++.. ....+.+..+.+++.+||+.||++||||+||++.|+
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~-~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 293 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCcc-ccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHH
Confidence 111111222 2222221 122345668999999999999999999999999874
No 38
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.2e-43 Score=391.52 Aligned_cols=238 Identities=22% Similarity=0.272 Sum_probs=184.8
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
+.|+..++||+|+||+||+|+. .+|+.||||+++.... ..+|+.++++++|||||++++++.+.+.. +++
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~~~~~-~iv 128 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVREGPWV-NIF 128 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEETTEE-EEE
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh--------HHHHHHHHHhCCCCCCCcEEEEEEECCEE-EEE
Confidence 5677788999999999999966 4799999999975321 24699999999999999999999876543 222
Q ss_pred ecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC-CceEeccccccccCCCC
Q 042958 894 LSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN-EAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 894 ~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~DfGla~~~~~~~ 963 (1075)
+++.. ....+++.+...++.||+.||+|||++ +||||||||+|||++.++ ++||+|||+|+.+..+.
T Consensus 129 mEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred EeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 32221 235689999999999999999999999 999999999999999998 69999999999876543
Q ss_pred Cc-----eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 964 SN-----WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 964 ~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
.. ....+||+.|||||++.+..|+.++||||+||++|||++|+.||......... ..+.....+ ..
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~--------~~i~~~~~~-~~ 276 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC--------LKIASEPPP-IR 276 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH--------HHHHHSCCG-GG
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH--------HHHHcCCCC-ch
Confidence 21 23357999999999999999999999999999999999999999754332211 111111110 01
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLL 1073 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L 1073 (1075)
......+..+.+++.+||++||++|||++|+++.|
T Consensus 277 ~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l 311 (336)
T 4g3f_A 277 EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKV 311 (336)
T ss_dssp GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence 11223445699999999999999999999998765
No 39
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.3e-43 Score=386.52 Aligned_cols=240 Identities=22% Similarity=0.257 Sum_probs=183.6
Q ss_pred cCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
++|++.+.||+|+||+||+|+.. +++.||||++........ ...++.+|++++++++|||||++++++.+.+..
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~- 101 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL- 101 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEECEEEEEEETTEE-
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE-
Confidence 57999999999999999999652 578999999875432221 134688999999999999999999999876543
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+++++... ....+++.+...++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+....
T Consensus 102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 33333222 235689999999999999999999999 999999999999999999999999999997665
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
........+||+.|||||++.+..|+.++||||+||++|||+||+.||...... .....+.....+.+.
T Consensus 179 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~--------~~~~~i~~~~~~~p~--- 247 (304)
T 3ubd_A 179 HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK--------ETMTMILKAKLGMPQ--- 247 (304)
T ss_dssp --CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT---
T ss_pred CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH--------HHHHHHHcCCCCCCC---
Confidence 555556778999999999999999999999999999999999999999743321 122222223333332
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCH-----HHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTM-----PKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1071 (1075)
..+.++.+++.+||++||++|||+ +|+++
T Consensus 248 -~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 248 -FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp -TSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred -cCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 234468999999999999999985 57664
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-41 Score=402.87 Aligned_cols=374 Identities=25% Similarity=0.254 Sum_probs=211.0
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccC-CCCCCCCCCCcEEEccCcccCCCCCccccccCCcceee
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTI-PPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLA 151 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 151 (1075)
++|++|||++|.+++..|..++++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56778888888777767777777777777777777776554 45577777777777777777766666666666666666
Q ss_pred cccccccCCCCC--CCCCCCCCCEEEcCCCCCCCCCCcc-ccCccccceEeeeccccccccCCCCcCC--CCcCceeccc
Q 042958 152 LYSNYLEDLIPP--SLGNLSNLDTLHLYDNSLSDSIPSE-FGNLRSLSMLSLGYNKFSGSIPHSLGNL--TNLATLYLHN 226 (1075)
Q Consensus 152 L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~~L~~L~L~~ 226 (1075)
+++|.+++..+. .|..+++|++|+|++|++++..|.. |.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 666666553322 2555555555555555555554443 4555555555555555554444444433 3344444444
Q ss_pred cCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCC---ccCcEEEccCCCCCC
Q 042958 227 NSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNL---RSLSMLNLGYNKLNG 303 (1075)
Q Consensus 227 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~ 303 (1075)
|.+.+..+..++. .....+..+++|++|++++|.+++..|..+... ++|+.|++++|.+.+
T Consensus 190 n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 190 ITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp CBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred Ccccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 4433222111100 000111222334444444444333333222211 344444444443322
Q ss_pred CcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCC
Q 042958 304 IIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGN 383 (1075)
Q Consensus 304 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 383 (1075)
.. +..+.+....+..+..+ ..++|++|++++|.+.+..|..+..
T Consensus 254 ~~--------------~~~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 254 SS--------------FGHTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp CC--------------TTCCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTTT
T ss_pred cc--------------cchhhhccCcccccccc----------------------cccCceEEEecCccccccchhhccc
Confidence 10 00111111111111111 1245666666666666656666666
Q ss_pred CcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccccccccc
Q 042958 384 LRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALY 463 (1075)
Q Consensus 384 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 463 (1075)
+++|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 66666666666666666666666677777777777777666666677777777777777777766677777777777777
Q ss_pred ccCCccccCCCccccCcCCCCEEeCCCCcccCCCc
Q 042958 464 LYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIP 498 (1075)
Q Consensus 464 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 498 (1075)
|++|++++..+..+..+++|+.|++++|++++..|
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77777776555566777777777777777776544
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-41 Score=401.32 Aligned_cols=391 Identities=22% Similarity=0.220 Sum_probs=271.8
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.++.
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~---------------- 72 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN---------------- 72 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT----------------
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc----------------
Confidence 46777777776 6665 33 6788888888888877788888888888888888887655432
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCC--CCcCCCCcCceeccccCCCCCC
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPH--SLGNLTNLATLYLHNNSLFDSI 233 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~ 233 (1075)
..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+. .|..+++|++|+|++|.+++..
T Consensus 73 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 73 -------NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145 (455)
T ss_dssp -------TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC
T ss_pred -------ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC
Confidence 2344555555555555555555555555555555555555555543322 2556666666666666665554
Q ss_pred ccc-ccCCCCCCeEeccCCCCCCccCCCCccc--ccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC
Q 042958 234 PSE-LGNLRSLSMLSLGYNKLSGSIPHSLGNL--TNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG 310 (1075)
Q Consensus 234 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 310 (1075)
|.. +..+++|++|++++|++++..+..+..+ .+|+.|++++|.+++..+..+.. .....+.
T Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~ 209 (455)
T 3v47_A 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPF 209 (455)
T ss_dssp CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTT
T ss_pred cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------------ccccccc
Confidence 544 5666666666666666666555555544 45555666665555433222110 0001122
Q ss_pred ccccccceecccccccCCCCcccccc---cccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCC--Cc
Q 042958 311 NLTNLATLYIHNNSLSGSIPSEIGNL---RSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGN--LR 385 (1075)
Q Consensus 311 ~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~ 385 (1075)
.+++|++|++++|.+++..|..+... ++|+.|++++|.+.+.. +..+.+.+..+..+.. .+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTS
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCccccccccccc
Confidence 33445555555555544444444332 55666666666544321 1111222222222332 36
Q ss_pred ccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccccccccccc
Q 042958 386 SLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLY 465 (1075)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 465 (1075)
+|++|++++|++.+..|..++.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCc
Q 042958 466 DNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPS 523 (1075)
Q Consensus 466 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 523 (1075)
+|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999999999999999999987778889999999999999999987763
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-42 Score=404.25 Aligned_cols=420 Identities=26% Similarity=0.318 Sum_probs=181.3
Q ss_pred cccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccccccccccc
Q 042958 193 RSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYL 272 (1075)
Q Consensus 193 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 272 (1075)
++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+++|+.++++.|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 5566666666666 45666666666666666666666555666565555555555544331 23555555
Q ss_pred ccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCccccc
Q 042958 273 YENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGS 352 (1075)
Q Consensus 273 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 352 (1075)
++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++++
T Consensus 79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-
T ss_pred cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-
Confidence 5555553 2221 2455555555555554 3322 2455555555555553 1111 1345555555555553
Q ss_pred CCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccc
Q 042958 353 IPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNL 432 (1075)
Q Consensus 353 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 432 (1075)
+| .|+.+++|++|++++|++.+ +|..+ .+|++|++++|++++ +| .++.+++|++|++++|++++
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~--------- 209 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK--------- 209 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS---------
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc---------
Confidence 33 35555555555555555532 33221 244445555554443 23 34444444555554444443
Q ss_pred cccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeec
Q 042958 433 RSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYL 512 (1075)
Q Consensus 433 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 512 (1075)
+|... ++|++|++++|+++ .+| .++.+++|+.|++++|++++ +|.. +++|+.|++
T Consensus 210 ----------------l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 264 (454)
T 1jl5_A 210 ----------------LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNV 264 (454)
T ss_dssp ----------------CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEEC
T ss_pred ----------------CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEEC
Confidence 22221 24455555555554 334 24455555555555555543 2221 244555555
Q ss_pred cCCCCCCCCCccccCcccccccccccccccc--ccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccc
Q 042958 513 YNNSLFDSIPSELGNLRSLSMLSFAYNKLSG--SIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPK 590 (1075)
Q Consensus 513 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~ 590 (1075)
++|++++ +|.. .++|+.|++++|++++ .+|+++++|++++|++++. +.. ...|+.|++++|++++ +|..
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-CDL---PPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-CCC---CTTCCEEECCSSCCSC-CCCC
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-cCC---cCcCCEEECCCCcccc-cccc
Confidence 5555543 2322 2445555555555554 4555666666666666541 110 1355666666666664 3333
Q ss_pred cCcccccceeecCCCcccCcccccccccccceEEEcccccccc--ccchhcccccccceeeeccccccCchhhhhccccc
Q 042958 591 LGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSR--GIPIKLEELIHLSELDLSHNFLREAIPSQICIMQS 668 (1075)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 668 (1075)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. |+.|.+.+.+|.. +++
T Consensus 336 ---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~ 397 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQN 397 (454)
T ss_dssp ---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------
T ss_pred ---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCc
Confidence 477888888888887 4666 46788888888888887 56665543 3457777777763 478
Q ss_pred cceeecCCCcccc--CChhhhcccccccEEeecCCccCCCCCCCc
Q 042958 669 LENLNLSHNSLVG--LIPSCFEKMHGLLRIDISYNELQGPIPNSI 711 (1075)
Q Consensus 669 L~~L~ls~N~l~~--~~p~~~~~~~~l~~l~~s~N~~~~~~p~~~ 711 (1075)
|+.|++++|++++ .+|.+ ++.|.+.+|.+.+++|...
T Consensus 398 L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 398 LKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp ---------------------------------------------
T ss_pred CCEEECCCCcCCccccchhh------HhheeCcCcccCCccccCH
Confidence 9999999999997 66654 4566788888888776543
No 43
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=3.2e-42 Score=377.78 Aligned_cols=239 Identities=22% Similarity=0.423 Sum_probs=176.2
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-----
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH----- 888 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 888 (1075)
++|++.+.||+|+||+||+|+. .+|+.||||++.... .....+.+.+|++++++++|||||++++++.+.+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 4588899999999999999965 479999999987543 33446789999999999999999999999865432
Q ss_pred ------chhheecCccc------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceE
Q 042958 889 ------SLAMILSNNAA------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHV 950 (1075)
Q Consensus 889 ------~l~~~~~~~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 950 (1075)
.++++++...+ .....+...+.++.||++||+|||++ +|+||||||+|||++.++.+||
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl 159 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKV 159 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEE
Confidence 12233332211 12345667889999999999999999 9999999999999999999999
Q ss_pred eccccccccCCCCCc------------eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccc
Q 042958 951 SDFGIAKFLKPDSSN------------WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSS 1018 (1075)
Q Consensus 951 ~DfGla~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~ 1018 (1075)
+|||+|+.+...... .+..+||+.|||||++.+..|+.++||||+||++|||++ ||....
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----- 231 (299)
T 4g31_A 160 GDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----- 231 (299)
T ss_dssp CCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-----
T ss_pred ccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-----
Confidence 999999877643221 234579999999999999999999999999999999996 764211
Q ss_pred hhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1019 SLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
........+.....+. ......+...+++.+||++||++|||+.|+++
T Consensus 232 --~~~~~~~~~~~~~~p~---~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 232 --ERVRTLTDVRNLKFPP---LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp --HHHHHHHHHHTTCCCH---HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --HHHHHHHHHhcCCCCC---CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111222333333322 23344556788999999999999999999986
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-41 Score=375.35 Aligned_cols=288 Identities=31% Similarity=0.533 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHhccCCCCCCCcCCCCcCCCCCCCCCc--cceEEeCCC---CceeEEEeccccccc--ccCCcccCCCCC
Q 042958 2 EEAHALLRWKTSLQNHNNGSLLSSWTLNNVTKTSPCA--WVGIHCNRG---GRVNSINLTSIGLKG--MLHDFSFSSFPH 74 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~~~l~sw~~~~~~~~~~c~--w~gv~C~~~---~~v~~l~l~~~~l~g--~~~~~~~~~l~~ 74 (1075)
+|++||++||+++.++ . .+++|.. ++.+|. |.||+|+.. ++|+.++++++++.| .+++. ++++++
T Consensus 6 ~~~~aL~~~k~~~~~~-~--~l~~W~~----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~-l~~l~~ 77 (313)
T 1ogq_A 6 QDKQALLQIKKDLGNP-T--TLSSWLP----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPY 77 (313)
T ss_dssp HHHHHHHHHHHHTTCC-G--GGTTCCT----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-GGGCTT
T ss_pred HHHHHHHHHHHhcCCc-c--cccCCCC----CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh-HhCCCC
Confidence 5899999999999654 2 6899972 233487 999999864 678888777777776 55554 667777
Q ss_pred ccEEEccC-CCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecc
Q 042958 75 LAYLDLWH-NQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALY 153 (1075)
Q Consensus 75 L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 153 (1075)
|++|+|++ |.+.+.+|..++++++|++|+|++|.+++.+|..|+++++|++|+|++|++++.+|..+..+
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--------- 148 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL--------- 148 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC---------
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC---------
Confidence 77777774 67777777777777777777777777776677777777777777777777766666655554
Q ss_pred cccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCcc-ccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC
Q 042958 154 SNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLR-SLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
++|++|++++|++++.+|..|..++ +|++|++++|++++.+|..+..++ |++|++++|.+++.
T Consensus 149 ---------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 149 ---------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp ---------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred ---------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 4555555555555545555555555 556666666666555565565554 66666666666655
Q ss_pred CcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcc
Q 042958 233 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNL 312 (1075)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 312 (1075)
.|..|..+++|++|+|++|++++.+|. +..+++|++|++++|.+++.+|..|..+++|++|+|++|++++.+|.. ..+
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 666666666666666666666654443 566667777777777777667777777777777777777777666655 677
Q ss_pred ccccceeccccc
Q 042958 313 TNLATLYIHNNS 324 (1075)
Q Consensus 313 ~~L~~L~L~~N~ 324 (1075)
++|+.|++++|+
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T 1ogq_A 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred cccChHHhcCCC
Confidence 777777777776
No 45
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=377.09 Aligned_cols=253 Identities=23% Similarity=0.320 Sum_probs=188.0
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-----c
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR-----H 888 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~ 888 (1075)
++|++.+.||+|+||+||+|.. .+|+.||||++...... ....+.+.+|+++|++++|||||++++++.... .
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 5799999999999999999965 57999999999765432 334577889999999999999999999876432 2
Q ss_pred chhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++++++.. .....+++.+...++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+.
T Consensus 133 ~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~ 209 (398)
T 4b99_A 133 SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLC 209 (398)
T ss_dssp CEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence 223333222 1245789999999999999999999999 99999999999999999999999999998765
Q ss_pred CCC----CceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh------------
Q 042958 961 PDS----SNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN------------ 1023 (1075)
Q Consensus 961 ~~~----~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~------------ 1023 (1075)
... ......+||+.|||||++.+. .++.++||||+||++|||++|+.||..............
T Consensus 210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~ 289 (398)
T 4b99_A 210 TSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQA 289 (398)
T ss_dssp ------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-
T ss_pred cCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhh
Confidence 432 234567899999999998875 468999999999999999999999975432111000000
Q ss_pred ---hhh---hhccCCCCCCCC-cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 ---IAL---DEMLDPRLPTPS-CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ---~~~---~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
... ........+.+. ......+.++.+++.+||+.||++|||++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 290 VGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp ----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 000 000001111100 001122356889999999999999999999976
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-38 Score=373.05 Aligned_cols=358 Identities=20% Similarity=0.216 Sum_probs=278.7
Q ss_pred ccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCc
Q 042958 68 SFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSL 147 (1075)
Q Consensus 68 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 147 (1075)
+++++++|++|||++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|+|++|++++. | ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 477889999999999999864 5 689999999999999999864 4 88999999999999999874 3 8889999
Q ss_pred ceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecccc
Q 042958 148 NYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNN 227 (1075)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 227 (1075)
++|++++|.++++ + ++.+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+..+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999999886 3 88899999999999999874 2 788899999999999655455 4778889999999999
Q ss_pred CCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCC
Q 042958 228 SLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPH 307 (1075)
Q Consensus 228 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 307 (1075)
++++ +| ++.+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 9886 44 78888999999999998864 37888889999999999887 45 778888999999999888764
Q ss_pred CCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCccc
Q 042958 308 SLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSL 387 (1075)
Q Consensus 308 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 387 (1075)
++.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ...+|
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 445667777777665 35667778887766665 46677888888888877666663 33455
Q ss_pred ceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCC
Q 042958 388 SMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDN 467 (1075)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 467 (1075)
+.|++++| ++|++|++++|++++. .++++++|+.|++++|++++ ++.|..|++++|
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN 365 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred eEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence 55555544 5677888888888764 27777888888888887774 245666777778
Q ss_pred ccccCCCccccCcCCCCEEeCCCCcccCCCcccc
Q 042958 468 SLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSL 501 (1075)
Q Consensus 468 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 501 (1075)
.++|. +.+..|..+++++|+++|.+|..+
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 77764 345566777788888877777654
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-38 Score=372.32 Aligned_cols=345 Identities=35% Similarity=0.496 Sum_probs=191.8
Q ss_pred cCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEE
Q 042958 96 ISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLH 175 (1075)
Q Consensus 96 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (1075)
+++|+.|++++|.+. .+| .+..+++|++|+|++|.+++..| +..+++|++|++++|.+.+..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 344444444444443 222 24444444555555444443222 4444455555555555444433 55566666666
Q ss_pred cCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC
Q 042958 176 LYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 176 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
+++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+.. .+..+++|++|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 66666655432 5666666666666666653 22 35666666666664 3343322 25666666666666666653
Q ss_pred ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccc
Q 042958 256 SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGN 335 (1075)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 335 (1075)
. ..+..+++|++|++++|.+++..| ++.+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 2 235556666666666666664433 45556666666666666543 245556666666666666654433 555
Q ss_pred ccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEE
Q 042958 336 LRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLD 415 (1075)
Q Consensus 336 l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 415 (1075)
+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 6666666666666654322 5556666666666666644332 5556666666666666655444 55666666666
Q ss_pred eeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCcccc
Q 042958 416 LYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSG 471 (1075)
Q Consensus 416 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 471 (1075)
+++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 666666543 345566666666666666665554 5566666666666666664
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-38 Score=367.62 Aligned_cols=354 Identities=19% Similarity=0.213 Sum_probs=307.6
Q ss_pred CceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEE
Q 042958 48 GRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQ 127 (1075)
Q Consensus 48 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 127 (1075)
.+++.++++++++.+. + .++.+++|++|+|++|++++. | ++.+++|++|+|++|.+++. | ++++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 5789999999999985 3 388999999999999999974 4 99999999999999999964 4 99999999999
Q ss_pred ccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecccccc
Q 042958 128 LFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSG 207 (1075)
Q Consensus 128 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 207 (1075)
+++|++++ +| ++.+++|++|++++|.++++ .++.+++|++|++++|+..+.+ .+..+++|++|++++|++++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99999997 44 89999999999999999996 3889999999999999665555 48899999999999999996
Q ss_pred ccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCC
Q 042958 208 SIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGN 287 (1075)
Q Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 287 (1075)
+| +..+++|++|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++.. +..
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 45 88999999999999999875 48899999999999999997 55 889999999999999999754 456
Q ss_pred CccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceee
Q 042958 288 LRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLY 367 (1075)
Q Consensus 288 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~ 367 (1075)
+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|+
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~ 313 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD 313 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEec
Confidence 788999998876 46678899999887776 57889999999999998777764 345677776
Q ss_pred ccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceeccccccccc
Q 042958 368 LYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSG 447 (1075)
Q Consensus 368 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 447 (1075)
+++| ++|++|++++|++++. + ++.+++|+.|++++|++++ ++.|..|++++|.+.|
T Consensus 314 l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 314 LSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp CTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred hhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 6655 6799999999999974 3 8999999999999999985 3568888999999987
Q ss_pred CCCCCCccccccccccccCCccccCCCcccc
Q 042958 448 SIPHSLGNLTNLDALYLYDNSLSGSIPGEIG 478 (1075)
Q Consensus 448 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 478 (1075)
. +++..|..+++++|+++|.+|..+.
T Consensus 370 ~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 370 E-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp E-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred c-----ceeeecCccccccCcEEEEcChhHh
Confidence 5 4677899999999999999997654
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-38 Score=370.75 Aligned_cols=346 Identities=32% Similarity=0.460 Sum_probs=286.6
Q ss_pred CCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 71 SFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
.+++++.|+++++.+. .+| .+..+++|++|+|++|.+++..| ++++++|++|++++|++++..| +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567888888888887 455 47888888888888888875443 8888888999998888886544 8888888999
Q ss_pred ecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCC
Q 042958 151 ALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (1075)
++++|.+.++.+ +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 998888888755 88889999999999988864 2 48888899999986 5555333 3888889999999999887
Q ss_pred CCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG 310 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 310 (1075)
+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 54 347888999999999999887655 77788999999999998853 467888999999999999987655 88
Q ss_pred ccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCccccee
Q 042958 311 NLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSML 390 (1075)
Q Consensus 311 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 390 (1075)
.+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++.+..| +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 88999999999999986544 8889999999999999986544 7888999999999999977665 7788999999
Q ss_pred eeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceeccccccccc
Q 042958 391 SLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSG 447 (1075)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 447 (1075)
++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999865 478899999999999999998776 8899999999999999985
No 50
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=6.9e-39 Score=361.25 Aligned_cols=194 Identities=25% Similarity=0.316 Sum_probs=156.7
Q ss_pred HHHHHhcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEe
Q 042958 809 EIIRATNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFC 883 (1075)
Q Consensus 809 e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 883 (1075)
++....++|++.+.||+|+||+||+|+.+ +++.||||++.... ...++.+|+++++.+ +|||||++++++
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-----~~~~~~~E~~~l~~~~~h~nIv~l~~~~ 89 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-----HPIRIAAELQCLTVAGGQDNVMGVKYCF 89 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-----CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-----CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 33445688999999999999999999643 57889999986532 135688999999998 799999999998
Q ss_pred eccccchhheecCccc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC-CCceEeccccc
Q 042958 884 SHVRHSLAMILSNNAA------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD-NEAHVSDFGIA 956 (1075)
Q Consensus 884 ~~~~~~l~~~~~~~~~------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~DfGla 956 (1075)
.+.+..+ ++++...+ -..+++.+...++.|++.||+|||++ +|+||||||+|||++.+ +.+||+|||+|
T Consensus 90 ~~~~~~~-lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla 165 (361)
T 4f9c_A 90 RKNDHVV-IAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLA 165 (361)
T ss_dssp EETTEEE-EEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EECCEEE-EEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCC
Confidence 8765533 33332221 24589999999999999999999999 99999999999999877 79999999999
Q ss_pred cccCCCCC----------------------------ceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCC
Q 042958 957 KFLKPDSS----------------------------NWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKH 1007 (1075)
Q Consensus 957 ~~~~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~ 1007 (1075)
+....... .....+||+.|||||++.+. .++.++||||+||++|||++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~ 245 (361)
T 4f9c_A 166 QGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRY 245 (361)
T ss_dssp EECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCS
T ss_pred cccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCC
Confidence 86543211 12345799999999998875 48999999999999999999999
Q ss_pred CCCc
Q 042958 1008 PRDF 1011 (1075)
Q Consensus 1008 p~~~ 1011 (1075)
||..
T Consensus 246 Pf~~ 249 (361)
T 4f9c_A 246 PFYK 249 (361)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9953
No 51
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=3.4e-38 Score=377.52 Aligned_cols=241 Identities=20% Similarity=0.301 Sum_probs=193.9
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||.||+|.. .+|+.||+|++... .....+.+.+|+++|+.++|||||++++++.+....+ ++
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~---~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~-iv 232 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP---HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV-MI 232 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEE-EE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc---chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE-EE
Confidence 6899999999999999999965 57999999998753 2334577899999999999999999999998765443 33
Q ss_pred ecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC--CCceEeccccccccCC
Q 042958 894 LSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD--NEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 894 ~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~kl~DfGla~~~~~ 961 (1075)
++... ....+++.+...++.||+.||+|||++ +|+||||||+||+++.+ +.+||+|||+|+.+..
T Consensus 233 ~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 233 YEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp EECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred EeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence 32221 234578999999999999999999999 99999999999999864 7999999999998764
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.......+....
T Consensus 310 ~-~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~--------~~~~~~i~~~~~~~~~~~~ 380 (573)
T 3uto_A 310 K-QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--------DETLRNVKSCDWNMDDSAF 380 (573)
T ss_dssp T-SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--------HHHHHHHHTTCCCCCSGGG
T ss_pred C-CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--------HHHHHHHHhCCCCCCcccc
Confidence 4 344567899999999999999999999999999999999999999974332 1122233333322222223
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+.++.+|+.+||+.||++|||++|+++
T Consensus 381 ~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 381 SGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 334557899999999999999999999986
No 52
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.4e-38 Score=374.06 Aligned_cols=243 Identities=21% Similarity=0.228 Sum_probs=185.6
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCC---CchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLP---GEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.++|++.++||+|+||+||+|+.+ +|+.||||++.+... .......+...++.+++.++|||||+++++|.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 367999999999999999999654 799999999864211 1111222334456777888999999999999876553
Q ss_pred hhheecCccc---------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 890 LAMILSNNAA---------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 890 l~~~~~~~~~---------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
++++++..+ ...+++.+...++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+.
T Consensus 268 -ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 -SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp -EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred -EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 333333222 35689999999999999999999999 99999999999999999999999999999875
Q ss_pred CCCCceeccccccCccCccccc-cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 961 PDSSNWTELAGTYGYVAPELAY-TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
... ..+.+||+.|||||++. +..|+.++||||+||++|||++|+.||........ ......+.......+.
T Consensus 344 ~~~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~-----~~i~~~i~~~~~~~p~- 415 (689)
T 3v5w_A 344 KKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK-----HEIDRMTLTMAVELPD- 415 (689)
T ss_dssp SCC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCH-----HHHHHHHHHCCCCCCT-
T ss_pred CCC--CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-----HHHHHhhcCCCCCCCc-
Confidence 432 34568999999999996 45799999999999999999999999974332111 1111222222222222
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPT-----MPKVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1071 (1075)
..+.++.+++.+|+++||++|++ ++||++
T Consensus 416 ---~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 416 ---SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp ---TSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred ---cCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 23446899999999999999998 677764
No 53
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.1e-37 Score=350.94 Aligned_cols=268 Identities=32% Similarity=0.598 Sum_probs=209.3
Q ss_pred ccccHHHHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEE
Q 042958 803 GKIVYEEIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGF 882 (1075)
Q Consensus 803 ~~~~~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 882 (1075)
..+++.++..+.++|+..+.||+|+||.||+|+..+|+.||||++........ ...+.+|+++++.++||||++++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGG--ELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----C--CCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchH--HHHHHHHHHHHHhccCCCccceEEE
Confidence 35678899999999999999999999999999888899999999876432221 2368899999999999999999999
Q ss_pred eeccccchhheec-Cc-----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceE
Q 042958 883 CSHVRHSLAMILS-NN-----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHV 950 (1075)
Q Consensus 883 ~~~~~~~l~~~~~-~~-----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 950 (1075)
+......+.++.. .. .....+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 9776544322211 11 12334899999999999999999999987779999999999999999999999
Q ss_pred eccccccccCCCCCc-eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh-------
Q 042958 951 SDFGIAKFLKPDSSN-WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL------- 1022 (1075)
Q Consensus 951 ~DfGla~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~------- 1022 (1075)
+|||+++........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||+............
T Consensus 176 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 3uim_A 176 GDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255 (326)
T ss_dssp CCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTT
T ss_pred ccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHH
Confidence 999999877544332 344569999999999998889999999999999999999999996322111110000
Q ss_pred --hhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1023 --NIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1023 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
........+.... .....+.+..+.+++.+||+.||++|||++||++.|+
T Consensus 256 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~ 307 (326)
T 3uim_A 256 LKEKKLEALVDVDLQ--GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307 (326)
T ss_dssp TSSCCSTTSSCTTCT--TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred hhchhhhhhcChhhc--cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhc
Confidence 1111222222222 2345677889999999999999999999999999985
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=364.02 Aligned_cols=302 Identities=23% Similarity=0.216 Sum_probs=172.3
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
+++++|||++|++++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL-------------- 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT--------------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc--------------
Confidence 456677777777766666666666666666666666666666666666666666666666664333
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+++.
T Consensus 98 ----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 98 ----------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp ----------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred ----------ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 3345555555555555555555555555555555555555555555555555556666666666655554
Q ss_pred CcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcc
Q 042958 233 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNL 312 (1075)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 312 (1075)
.+..|..+++|+.|+|++|.+.+..+..|..+++|++|++++|.+.+.+|..+....+|+.|++++|+++.+.+..|..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 44455566666666666666655545555555555555555555544444444444455555555555554443455555
Q ss_pred ccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeee
Q 042958 313 TNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSL 392 (1075)
Q Consensus 313 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 392 (1075)
++|++|+|++|.+++..+..|..+++|+.|++++|++++..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 55555555555555544455555555555555555555555555555555555555555554444444555555555555
Q ss_pred cccccc
Q 042958 393 GYNKLS 398 (1075)
Q Consensus 393 s~N~l~ 398 (1075)
++|++.
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 555553
No 55
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=366.63 Aligned_cols=312 Identities=24% Similarity=0.232 Sum_probs=245.6
Q ss_pred ccceEEeCCC----------CceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccC
Q 042958 38 AWVGIHCNRG----------GRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSN 107 (1075)
Q Consensus 38 ~w~gv~C~~~----------~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 107 (1075)
.|..|.|... ..++.|+++++.+.+..+. .|.++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 5889999752 3688999999999886554 4999999999999999999888999999999999999999
Q ss_pred cccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCc
Q 042958 108 LFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPS 187 (1075)
Q Consensus 108 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 187 (1075)
.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.+.++.+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99966667789999999999999999988888888899999999999998888888888888888888888888887777
Q ss_pred cccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccc
Q 042958 188 EFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNL 267 (1075)
Q Consensus 188 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 267 (1075)
.|..+++|+.|+|++|.+.+..+..|..+++|++|++++|...+.+|.......+|++|++++|+++...+..|..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 78888888888888888887777778888888888888877766666655555677777777777774433456666666
Q ss_pred cccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCC
Q 042958 268 ATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGN 347 (1075)
Q Consensus 268 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 347 (1075)
++|+|++|.+++..+..|..+++|+.|+|++|+++++.|.+|.++++|++|+|++|.+++..+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666666666655566666666666666666666666666666666666666666666555555666666666666666
Q ss_pred ccc
Q 042958 348 KLS 350 (1075)
Q Consensus 348 ~l~ 350 (1075)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 654
No 56
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=5.4e-37 Score=344.27 Aligned_cols=259 Identities=32% Similarity=0.505 Sum_probs=202.6
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
.++..++++|+..+.||+|+||.||+|..++|+.||||++.... ....+.+.+|+++++.++||||+++++++...+
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES---SQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC---SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 34455778999999999999999999998889999999987542 233578999999999999999999999987655
Q ss_pred cchhhee-cCc-----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccc
Q 042958 888 HSLAMIL-SNN-----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGI 955 (1075)
Q Consensus 888 ~~l~~~~-~~~-----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGl 955 (1075)
..+.++. ... .....++|.++++++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 185 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGI 185 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccc
Confidence 4322211 110 1123589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh-------hhhhh
Q 042958 956 AKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN-------LNIAL 1026 (1075)
Q Consensus 956 a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~-------~~~~~ 1026 (1075)
++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||............ .....
T Consensus 186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (321)
T 2qkw_B 186 SKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265 (321)
T ss_dssp CEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCC
T ss_pred ccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccH
Confidence 987543222 223456899999999999889999999999999999999999999754332211110 01111
Q ss_pred hhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1027 DEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....++.... ....+.+..+.+++.+||+.||++|||++||++.|+
T Consensus 266 ~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 311 (321)
T 2qkw_B 266 EQIVDPNLAD--KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311 (321)
T ss_dssp CSSSSSSCTT--CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHhcChhhcc--ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 2223333222 245677889999999999999999999999999875
No 57
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.7e-36 Score=335.78 Aligned_cols=242 Identities=24% Similarity=0.388 Sum_probs=193.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++...... ..+.+.+|+.++++++||||+++++++...+..+.
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l- 94 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWV- 94 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE-
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc---HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEE-
Confidence 46899999999999999999964 57999999998654322 24678899999999999999999999887654322
Q ss_pred eecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 893 ILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 893 ~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++........
T Consensus 95 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 171 (297)
T 3fxz_A 95 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS 171 (297)
T ss_dssp EEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred EEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence 222211 134588999999999999999999999 999999999999999999999999999988776655
Q ss_pred ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHH
Q 042958 965 NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDK 1044 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1075)
......||+.|+|||++.+..++.++||||+|+++|||++|+.||........ .........+.... ....
T Consensus 172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-----~~~~~~~~~~~~~~----~~~~ 242 (297)
T 3fxz_A 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-----LYLIATNGTPELQN----PEKL 242 (297)
T ss_dssp CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-----HHHHHHHCSCCCSC----GGGS
T ss_pred ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHhCCCCCCCC----cccc
Confidence 55667899999999999999999999999999999999999999964332111 11111111122222 2234
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1045 LISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1045 ~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+..+.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 243 SAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 456899999999999999999999986
No 58
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=5.1e-37 Score=341.70 Aligned_cols=251 Identities=28% Similarity=0.415 Sum_probs=185.3
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
.++....++|++.+.||+|+||.||+|+.. |+.||||++..... .....+++.+|++++++++||||+++++++....
T Consensus 30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 107 (309)
T 3p86_A 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP 107 (309)
T ss_dssp --CBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred ccccCChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC
Confidence 334445678999999999999999999774 89999999876543 3344578999999999999999999999997765
Q ss_pred cchhheecCcc------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCCeeeCCCCCceEecc
Q 042958 888 HSLAMILSNNA------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPP--IVHRDISSKNVLLDFDNEAHVSDF 953 (1075)
Q Consensus 888 ~~l~~~~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Df 953 (1075)
..+. +++... ....+++..++.++.|+++||+|||+. + |+||||||+||+++.++.+||+||
T Consensus 108 ~~~l-v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Df 183 (309)
T 3p86_A 108 NLSI-VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDF 183 (309)
T ss_dssp CCEE-EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCC
T ss_pred ceEE-EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCC
Confidence 4322 222111 112388999999999999999999999 7 999999999999999999999999
Q ss_pred ccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCC
Q 042958 954 GIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPR 1033 (1075)
Q Consensus 954 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
|+++.............||+.|+|||++.+..++.++||||+|+++|||++|+.||........ ... .......
T Consensus 184 g~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~-----~~~-~~~~~~~ 257 (309)
T 3p86_A 184 GLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV-----VAA-VGFKCKR 257 (309)
T ss_dssp C-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH-----HHH-HHHSCCC
T ss_pred CCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHH-HHhcCCC
Confidence 9998765544444556899999999999999999999999999999999999999974332110 000 1111122
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+ ...+.++.+++.+||+.||++|||++|+++.|+
T Consensus 258 ~~~~----~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~ 294 (309)
T 3p86_A 258 LEIP----RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR 294 (309)
T ss_dssp CCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCC----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 2222 223346999999999999999999999999874
No 59
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=4.4e-36 Score=336.28 Aligned_cols=253 Identities=25% Similarity=0.349 Sum_probs=199.1
Q ss_pred ccccHHHHHHHhcC----------CCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC
Q 042958 803 GKIVYEEIIRATND----------FDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI 871 (1075)
Q Consensus 803 ~~~~~~e~~~~~~~----------~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l 871 (1075)
+.++++++..+++. |+..+.||+|+||.||+|... +|+.||||++...... ..+.+.+|+.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~---~~~~~~~E~~~l~~l 99 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ---RRELLFNEVVIMRDY 99 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC---SHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh---HHHHHHHHHHHHHhC
Confidence 45677787777764 666779999999999999765 7999999998754322 246788999999999
Q ss_pred CcCceeeEEEEeeccccchhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC
Q 042958 872 RHRNIVKFYGFCSHVRHSLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD 943 (1075)
Q Consensus 872 ~h~niv~l~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~ 943 (1075)
+||||+++++++...+..+. +++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++
T Consensus 100 ~h~niv~~~~~~~~~~~~~l-v~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~ 175 (321)
T 2c30_A 100 QHFNVVEMYKSYLVGEELWV-LMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLT 175 (321)
T ss_dssp CCTTBCCEEEEEEETTEEEE-EECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred CCCCcceEEEEEEECCEEEE-EEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEC
Confidence 99999999999977554322 222211 134689999999999999999999999 999999999999999
Q ss_pred CCCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh
Q 042958 944 FDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN 1023 (1075)
Q Consensus 944 ~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~ 1023 (1075)
.++.+||+|||+++.............||+.|+|||++.+..++.++||||||+++|||++|+.||....... ..
T Consensus 176 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~-----~~ 250 (321)
T 2c30_A 176 LDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ-----AM 250 (321)
T ss_dssp TTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HH
T ss_pred CCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----HH
Confidence 9999999999999887655445556789999999999999999999999999999999999999997432211 11
Q ss_pred hhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 IALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
........+.... ....+..+.+++.+||+.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 251 KRLRDSPPPKLKN----SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHSSCCCCTT----GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHhcCCCCCcCc----cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1112222222221 2233456899999999999999999999986
No 60
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=335.05 Aligned_cols=244 Identities=27% Similarity=0.465 Sum_probs=190.7
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|+..+.||+|+||.||+|... +++.||+|++.. ......+.+.+|++++++++||||+++++++.+.+..+.+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR---FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc---CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 467888899999999999999664 699999998854 2345567899999999999999999999999876543322
Q ss_pred eecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.+...
T Consensus 86 -~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 161 (310)
T 3s95_A 86 -TEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161 (310)
T ss_dssp -EECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC--
T ss_pred -EEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccc
Confidence 22211 145689999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCce--------------eccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccc-hhhhhhhhh
Q 042958 963 SSNW--------------TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSS-SLNLNIALD 1027 (1075)
Q Consensus 963 ~~~~--------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~-~~~~~~~~~ 1027 (1075)
.... ....||+.|+|||++.+..++.++||||||+++|||++|..|+......... .........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
T 3s95_A 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLD 241 (310)
T ss_dssp ------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHH
T ss_pred cccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccc
Confidence 2211 1457999999999999999999999999999999999999998643322111 111111112
Q ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1028 EMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+..+ ..+.+++.+||+.||++|||++|+++.|+
T Consensus 242 ~~~~~~~~----------~~l~~li~~~l~~dP~~Rps~~~l~~~L~ 278 (310)
T 3s95_A 242 RYCPPNCP----------PSFFPITVRCCDLDPEKRPSFVKLEHWLE 278 (310)
T ss_dssp HTCCTTCC----------TTHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccCCCCCC----------HHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 22122222 24889999999999999999999999875
No 61
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.4e-36 Score=338.47 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=192.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+++++.++||||+++++++...+..+.
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l- 91 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL-NPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL- 91 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE-
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE-
Confidence 46799999999999999999976 5899999999875432 23345778999999999999999999999977554332
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.+...++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 92 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~- 167 (328)
T 3fe3_A 92 IMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG- 167 (328)
T ss_dssp EECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS-
T ss_pred EEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCC-
Confidence 222211 235688999999999999999999999 9999999999999999999999999999876543
Q ss_pred CceeccccccCccCccccccCCCC-cccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVT-EKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
......+||+.|+|||++.+..+. .++||||+||++|||++|+.||+.... ......+.......+..
T Consensus 168 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--------~~~~~~i~~~~~~~p~~--- 236 (328)
T 3fe3_A 168 GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL--------KELRERVLRGKYRIPFY--- 236 (328)
T ss_dssp CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCTT---
T ss_pred CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhCCCCCCCC---
Confidence 334556899999999999888775 789999999999999999999974332 11122222233332222
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+.++.+++.+||+.||.+|||++|+++
T Consensus 237 -~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 237 -MSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp -SCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred -CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 2345889999999999999999999986
No 62
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=3.6e-36 Score=335.52 Aligned_cols=253 Identities=20% Similarity=0.273 Sum_probs=188.6
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|...+|+.||||++..... .....+.+.+|++++++++||||+++++++......+. +
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l-v 97 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAE-DEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTL-V 97 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEE-E
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccc-cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEE-E
Confidence 477899999999999999999888899999999875432 23345778899999999999999999999976554322 2
Q ss_pred ecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 894 LSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 894 ~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
++.. .....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 98 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 174 (311)
T 3niz_A 98 FEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR 174 (311)
T ss_dssp EECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC
T ss_pred EcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCcc
Confidence 2211 1234589999999999999999999999 999999999999999999999999999998765555
Q ss_pred ceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh-------------hhhhhcc
Q 042958 965 NWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN-------------IALDEML 1030 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~-------------~~~~~~~ 1030 (1075)
......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............. .......
T Consensus 175 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3niz_A 175 SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWK 254 (311)
T ss_dssp ---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHH
T ss_pred cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhh
Confidence 5566788999999999876 5689999999999999999999999975433221100000 0000000
Q ss_pred CCCCCCCC-----cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1031 DPRLPTPS-----CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1031 ~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
........ ......+.++.+++.+|++.||++|||++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 255 QRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp SCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00000000 001122346889999999999999999999986
No 63
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.9e-36 Score=338.74 Aligned_cols=242 Identities=22% Similarity=0.272 Sum_probs=191.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|+.. +|+.||+|++...........+.+.+|+++++.++||||+++++++...+..+ +
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~-l 82 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC-F 82 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE-E
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE-E
Confidence 367888999999999999999665 79999999986432112223567889999999999999999999998765432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 222221 234688999999999999999999999 99999999999999999999999999998755554
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
......+||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......+. .
T Consensus 160 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~----~ 227 (337)
T 1o6l_A 160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--------RLFELILMEEIRFPR----T 227 (337)
T ss_dssp CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT----T
T ss_pred CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH--------HHHHHHHcCCCCCCC----C
Confidence 5556678999999999999999999999999999999999999999643221 111222222222222 2
Q ss_pred HHHHHHHHHHHccCCCCCCCC-----CHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRP-----TMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1071 (1075)
.+.++.+++.+||+.||++|| +++||++
T Consensus 228 ~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 228 LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 334689999999999999999 8999875
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-36 Score=348.98 Aligned_cols=332 Identities=26% Similarity=0.310 Sum_probs=223.3
Q ss_pred cccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccc
Q 042958 385 RSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYL 464 (1075)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 464 (1075)
.+++.|++++|.+....+..|..+++|++|++++|.++++.+..|..+++|++|+|++|++++..|..|+++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555555443444555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCcccccccccccccccc-
Q 042958 465 YDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSG- 543 (1075)
Q Consensus 465 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~- 543 (1075)
++|+++...+..|+.+++|++|++++|++++..|..++.+++|+.|++++|++++. .+..+++|+.|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 55555533333345555556666665555555555555556666666666655443 23445556666666666654
Q ss_pred ccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceE
Q 042958 544 SIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHY 623 (1075)
Q Consensus 544 ~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 623 (1075)
..|..++.|++++|.+... |... ...|+.|++++|++++. +.+..+++|++|+|++|.+++..|..|..+++|++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 4556677777777777644 2222 35677888888888754 56888999999999999999888999999999999
Q ss_pred EEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhcccccccEEeecCCcc
Q 042958 624 LNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLLRIDISYNEL 703 (1075)
Q Consensus 624 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~N~~ 703 (1075)
|+|++|++++ +|..+..+++|++|+|++|++++ +|..+..+++|+.|++++|++++.. +..++.|+.|++++|++
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCc
Confidence 9999999976 67777889999999999999985 6777888999999999999998763 67788999999999999
Q ss_pred CCCCCCCccccccccccccCCccccCC
Q 042958 704 QGPIPNSIAFRDAPIEALQGNKGLCGD 730 (1075)
Q Consensus 704 ~~~~p~~~~~~~~~~~~~~~n~~lcg~ 730 (1075)
++...... ++..+...+.+++..|+.
T Consensus 352 ~~~~~~~~-~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 352 DCNSLRAL-FRNVARPAVDDADQHCKI 377 (390)
T ss_dssp EHHHHHHH-TTTCCTTTBCCCCSCCCT
T ss_pred cchhHHHH-HHHHHhhcccccCceecc
Confidence 87542211 233333445666666764
No 65
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.5e-35 Score=328.59 Aligned_cols=264 Identities=30% Similarity=0.497 Sum_probs=207.0
Q ss_pred ccccHHHHHHHhcCCCCC------ceecccCceEEEEEEECCCCEEEEEEccCCCC-CchhHHHHHHHHHHHHhcCCcCc
Q 042958 803 GKIVYEEIIRATNDFDDE------HCIGKGGQGSVYKAELASGEIVAVKKFHSPLP-GEMTFQQEFLNEVKALTEIRHRN 875 (1075)
Q Consensus 803 ~~~~~~e~~~~~~~~~~~------~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~n 875 (1075)
..+++.++..++.+|... +.||+|+||.||+|.. +++.||||++..... ......+.+.+|+.++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 457889999999999887 8999999999999986 589999999875432 23345678999999999999999
Q ss_pred eeeEEEEeeccccchhheec-----------CccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC
Q 042958 876 IVKFYGFCSHVRHSLAMILS-----------NNAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF 944 (1075)
Q Consensus 876 iv~l~~~~~~~~~~l~~~~~-----------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 944 (1075)
|+++++++......+.++.. .......+++..+++++.|+++||+|||+. +|+||||||+||+++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcC
Confidence 99999999765543222211 112234689999999999999999999999 9999999999999999
Q ss_pred CCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh-
Q 042958 945 DNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN- 1021 (1075)
Q Consensus 945 ~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~- 1021 (1075)
++.+||+|||+++........ .....||+.|+|||.+.+ .++.++||||||+++|||++|+.||+...........
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 247 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK 247 (307)
T ss_dssp TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHH
T ss_pred CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHH
Confidence 999999999999876543322 234578999999998875 4889999999999999999999999754332211110
Q ss_pred -----hhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1022 -----LNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1022 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.........++.+.. .....+..+.+++.+||+.||++|||++||++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~ 302 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKMND---ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302 (307)
T ss_dssp HHHHTTSCCHHHHSCSSCSC---CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred HHhhhhhhhhhhhccccccc---cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 011123333443332 34567778999999999999999999999999875
No 66
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=6.4e-36 Score=332.65 Aligned_cols=249 Identities=23% Similarity=0.396 Sum_probs=188.7
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|... ..+|+|+++.... .....+.+.+|++++++++||||+++++++......+.+.
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCcEEEEEe
Confidence 468899999999999999999764 4689998876433 3344678999999999999999999999987655443333
Q ss_pred ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC--C
Q 042958 894 LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD--S 963 (1075)
Q Consensus 894 ~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~--~ 963 (1075)
+... .....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 2221 1345689999999999999999999999 9999999999999999999999999999865432 2
Q ss_pred CceeccccccCccCccccc---cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 964 SNWTELAGTYGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.......||+.|+|||++. +..++.++||||||+++|||++|+.||......... ..........+... ..
T Consensus 189 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~---~~~~~~~~~~~~~~---~~ 262 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI---IFMVGRGYASPDLS---KL 262 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH---HHHHHHTCCCCCST---TS
T ss_pred ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHH---HHHHhcCCCCcchh---hh
Confidence 2334567999999999886 566889999999999999999999999744321111 11111111222221 12
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...++..+.+++.+||+.||++|||+.||++.|+
T Consensus 263 ~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~ 296 (307)
T 3lb7_A 263 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHH
Confidence 2234456999999999999999999999999875
No 67
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=339.46 Aligned_cols=241 Identities=24% Similarity=0.355 Sum_probs=182.5
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|.. .+|+.||||++....... ..+.+.+|++++++++||||+++++++......+.
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~--~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC-----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccch--HHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 357889999999999999999965 579999999987654322 23578899999999999999999999987654332
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+++... ....+++.++..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 86 -v~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 86 -VLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp -EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred -EEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 222221 235689999999999999999999999 9999999999999999999999999999876543
Q ss_pred CC-ceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 963 SS-NWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 963 ~~-~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||+..... .....+.......+..
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~~- 232 (347)
T 3zgw_A 162 KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM--------ALYKKIMRGKYDVPKW- 232 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCTT-
T ss_pred CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCCC-
Confidence 22 3445679999999999988775 88999999999999999999999743221 1122222223322222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..+.+++.+||+.||++|||++|+++
T Consensus 233 ---~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 233 ---LSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ---CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 2345889999999999999999999986
No 68
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=349.52 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=194.0
Q ss_pred HHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
...++|++.+.||+|+||.||+|.. .+|+.||+|++..... .....+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 86 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL-SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHY 86 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC-HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEE
Confidence 3457899999999999999999955 5799999999876543 2334567899999999999999999999998765543
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC---CCCCceEeccccccc
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD---FDNEAHVSDFGIAKF 958 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfGla~~ 958 (1075)
.+ ++... ....+++.+...++.||++||+|||+. +|+||||||+||+++ .++.+||+|||+++.
T Consensus 87 lv-~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 87 LI-FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp EE-ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EE-EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 22 22211 235689999999999999999999999 999999999999998 467899999999988
Q ss_pred cCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 959 LKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
............||+.|+|||++.+..++.++||||+||++|+|++|+.||...... .....+.......+.
T Consensus 163 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~--------~~~~~i~~~~~~~~~ 234 (444)
T 3soa_A 163 VEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH--------RLYQQIKAGAYDFPS 234 (444)
T ss_dssp CCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--------HHHHHHHHTCCCCCT
T ss_pred ecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH--------HHHHHHHhCCCCCCc
Confidence 776555556678999999999999999999999999999999999999999643221 111222222222222
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+.++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 235 PEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 122334456999999999999999999999986
No 69
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=5.1e-36 Score=331.51 Aligned_cols=252 Identities=20% Similarity=0.287 Sum_probs=190.6
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||+||+|... +|+.||||++..... .....+.+.+|+.++++++||||+++++++...+..+. +
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l-v 79 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTL-V 79 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE-E
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEE-E
Confidence 57888999999999999999664 689999999976543 33345788899999999999999999999987654332 2
Q ss_pred ecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 894 LSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 894 ~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
++... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 80 ~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 156 (292)
T 3o0g_A 80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR 156 (292)
T ss_dssp EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS
T ss_pred EecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCccc
Confidence 22211 145689999999999999999999999 999999999999999999999999999998765555
Q ss_pred ceeccccccCccCccccccCC-CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhh-----------hhhccC-
Q 042958 965 NWTELAGTYGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIA-----------LDEMLD- 1031 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~-----------~~~~~~- 1031 (1075)
......||+.|+|||++.+.. ++.++||||+|+++|||++|+.||................ .....+
T Consensus 157 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 236 (292)
T 3o0g_A 157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY 236 (292)
T ss_dssp CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccc
Confidence 556678999999999988766 7999999999999999999888863222111000000000 000000
Q ss_pred ---CC---CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1032 ---PR---LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1032 ---~~---~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+. ...........+..+.+++.+|++.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 00 00000111233456899999999999999999999986
No 70
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=5.4e-36 Score=342.11 Aligned_cols=243 Identities=22% Similarity=0.377 Sum_probs=190.3
Q ss_pred hcCCCCCceecccCceEEEEEEE--------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEee
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL--------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCS 884 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~--------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 884 (1075)
.++|++.+.||+|+||.||+|+. .++..||||+++.. ......+++.+|+++++++ +||||++++++|.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD--ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT--CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC--cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence 46788899999999999999965 24567999999754 2334467899999999999 8999999999997
Q ss_pred ccccchhheecCccc-------------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Q 042958 885 HVRHSLAMILSNNAA-------------------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKN 939 (1075)
Q Consensus 885 ~~~~~l~~~~~~~~~-------------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~N 939 (1075)
..+..+.+ ++.... ...+++.+++.++.||++||+|||+. +|+||||||+|
T Consensus 158 ~~~~~~lv-~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~N 233 (370)
T 2psq_A 158 QDGPLYVI-VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARN 233 (370)
T ss_dssp SSSSCEEE-EECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGG
T ss_pred cCCCEEEE-EEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccchhh
Confidence 75543222 221111 13478999999999999999999999 99999999999
Q ss_pred eeeCCCCCceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccc
Q 042958 940 VLLDFDNEAHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMS 1016 (1075)
Q Consensus 940 ill~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~ 1016 (1075)
|+++.++.+||+|||+++....... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.......
T Consensus 234 Ill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~ 313 (370)
T 2psq_A 234 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE 313 (370)
T ss_dssp EEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred EEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence 9999999999999999987654332 2233457789999999999999999999999999999999 999997543211
Q ss_pred cchhhhhhhhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1017 SSSLNLNIALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1017 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+... ....+ ..++..+.+++.+||+.||++|||++|+++.|+
T Consensus 314 --------~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~ 360 (370)
T 2psq_A 314 --------LFKLLKEGHRMDKP----ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 360 (370)
T ss_dssp --------HHHHHHTTCCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --------HHHHHhcCCCCCCC----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111111 11111 223446999999999999999999999999875
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-36 Score=367.44 Aligned_cols=334 Identities=26% Similarity=0.294 Sum_probs=222.4
Q ss_pred cccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccc
Q 042958 385 RSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYL 464 (1075)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 464 (1075)
.+++.+++++|.+....+..|..+++|++|+|++|.++++.|..|+.+++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34455555555554444444455555555555555555544455555555555555555555544555555555555555
Q ss_pred cCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCcccccccccccccccc-
Q 042958 465 YDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSG- 543 (1075)
Q Consensus 465 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~- 543 (1075)
++|.+++..+..|+.+++|++|+|++|.+++..|..|+++++|+.|+|++|.+++. .++.+++|+.|++++|.+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 55555544344445555555555555555555555555555555555555555443 13344555555555555554
Q ss_pred ccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceE
Q 042958 544 SIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHY 623 (1075)
Q Consensus 544 ~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 623 (1075)
..|.+++.|++++|.+....+... ..|+.|+|++|.+++. ..+..+++|+.|+|++|.|++..|..|+.+++|++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 455566777777776664333221 4567777777777753 56888999999999999999888999999999999
Q ss_pred EEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCChhhhcccccccEEeecCCcc
Q 042958 624 LNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLLRIDISYNEL 703 (1075)
Q Consensus 624 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~N~~ 703 (1075)
|+|++|++++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+|++.. +..++.|+.|++++|++
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 9999999986 67777889999999999999985 7777888999999999999998763 66778999999999999
Q ss_pred CCCCCCCccccccccccccCCccccCCCC
Q 042958 704 QGPIPNSIAFRDAPIEALQGNKGLCGDVK 732 (1075)
Q Consensus 704 ~~~~p~~~~~~~~~~~~~~~n~~lcg~~~ 732 (1075)
+|.++.. -+.......+.++...|+...
T Consensus 358 ~~~~~~~-~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 358 DCNSLRA-LFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp EHHHHHH-HTTTCCTTTBCCCCCCCCTTC
T ss_pred CChhHHH-HHHHHhhhccccccccCCcch
Confidence 8765332 244445556778888898643
No 72
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-36 Score=332.60 Aligned_cols=249 Identities=25% Similarity=0.354 Sum_probs=190.3
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+++.||+|++...........+.+.+|+.++++++||||+++++++...+..+.+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 46789999999999999999965 47999999998766555666678899999999999999999999999776543322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 90 -~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 -MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp -EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred -EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 22211 234689999999999999999999999 99999999999999999999999999998765433
Q ss_pred C-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC-CcCc
Q 042958 964 S-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP-SCIV 1041 (1075)
Q Consensus 964 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 1041 (1075)
. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||........ ..... ....+.. ....
T Consensus 166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~-------~~~~~-~~~~~~~~~~~~ 237 (294)
T 4eqm_A 166 LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI-------AIKHI-QDSVPNVTTDVR 237 (294)
T ss_dssp ---------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH-------HHHHH-SSCCCCHHHHSC
T ss_pred ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH-------HHHHh-hccCCCcchhcc
Confidence 2 23345799999999999999999999999999999999999999974332110 11111 1111110 1112
Q ss_pred HHHHHHHHHHHHHccCCCCCCCC-CHHHHHhhhc
Q 042958 1042 QDKLISIVEVAISCLDENPESRP-TMPKVSQLLK 1074 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~ 1074 (1075)
.+.+..+.+++.+|+++||++|| +++++.+.|+
T Consensus 238 ~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~ 271 (294)
T 4eqm_A 238 KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLS 271 (294)
T ss_dssp TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHH
Confidence 23345699999999999999999 8888888764
No 73
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-36 Score=338.96 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=188.7
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|.+.+.||+|+||.||+|.. .+|+.||||++...........+.+.+|+.+++.++||||+++++++......+.
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l- 86 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM- 86 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE-
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE-
Confidence 36788999999999999999976 5799999999864221111223578899999999999999999999987654332
Q ss_pred eecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 893 ILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 893 ~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+++... ....+++.++..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++...... .
T Consensus 87 v~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~-~ 162 (336)
T 3h4j_B 87 VIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG-N 162 (336)
T ss_dssp EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS-B
T ss_pred EEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCC-c
Confidence 222221 235689999999999999999999999 9999999999999999999999999999876543 2
Q ss_pred ceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 965 NWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
.....+||+.|+|||++.+..+ ++++||||+|+++|||++|+.||+...... ....+.......+ ..
T Consensus 163 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--------~~~~i~~~~~~~p----~~ 230 (336)
T 3h4j_B 163 FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--------LFKKVNSCVYVMP----DF 230 (336)
T ss_dssp TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT--------CBCCCCSSCCCCC----TT
T ss_pred ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH--------HHHHHHcCCCCCc----cc
Confidence 3345679999999999988776 789999999999999999999997432211 1111111122222 12
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..+.+++.+||+.||.+|||++|+++
T Consensus 231 ~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 231 LSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 3346899999999999999999999976
No 74
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=6.7e-36 Score=338.88 Aligned_cols=245 Identities=20% Similarity=0.257 Sum_probs=193.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc---hhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE---MTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.+.|++.+.||+|+||.||+|... +|+.||+|++....... ....+.+.+|+.++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467899999999999999999665 79999999987643221 11357899999999999999999999999876543
Q ss_pred hhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC----CceEeccccc
Q 042958 890 LAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN----EAHVSDFGIA 956 (1075)
Q Consensus 890 l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfGla 956 (1075)
+.+ ++.. .....+++.++..++.||+.||+|||+. +|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv-~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLI-LELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEE-EECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEE-EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 222 2221 1235689999999999999999999999 999999999999998877 7999999999
Q ss_pred cccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 957 KFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......
T Consensus 167 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--------~~~~~~i~~~~~~~ 237 (361)
T 2yab_A 167 HEIEDG-VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--------QETLANITAVSYDF 237 (361)
T ss_dssp EECCTT-CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--------HHHHHHHHTTCCCC
T ss_pred eEcCCC-CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhcCCCC
Confidence 876643 234456799999999999998999999999999999999999999974322 11222232222222
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+.......+..+.+++.+||++||++|||++|+++
T Consensus 238 ~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 238 DEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 21112233456899999999999999999999985
No 75
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=6.2e-36 Score=330.09 Aligned_cols=252 Identities=22% Similarity=0.347 Sum_probs=184.9
Q ss_pred cCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhee
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMIL 894 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~~ 894 (1075)
++|++.+.||+|+||.||+|...+|+.||||++..... .....+.+.+|++++++++||||+++++++...+..+.+ +
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv-~ 79 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV-F 79 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE-E
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEecccc-ccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEE-E
Confidence 57888999999999999999888899999999865432 222246788999999999999999999999876543222 2
Q ss_pred cCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 895 SNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 895 ~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
+.. .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 80 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 156 (288)
T 1ob3_A 80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156 (288)
T ss_dssp ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred EecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccccc
Confidence 211 1135688999999999999999999999 9999999999999999999999999999877654444
Q ss_pred eeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh----------hhh--hccCC
Q 042958 966 WTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI----------ALD--EMLDP 1032 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~----------~~~--~~~~~ 1032 (1075)
.....||+.|+|||++.+. .++.++||||+|+++|||++|+.||............... ... ...++
T Consensus 157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (288)
T 1ob3_A 157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDP 236 (288)
T ss_dssp -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccc
Confidence 4556789999999998764 5899999999999999999999999754321100000000 000 00011
Q ss_pred CCCCC-----CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1033 RLPTP-----SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1033 ~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+... .......+.++.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 237 NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp TCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 11000 0011123456899999999999999999999986
No 76
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=5.5e-36 Score=342.40 Aligned_cols=245 Identities=22% Similarity=0.318 Sum_probs=188.7
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.++||+|+||.||+|+.+ +++.||||++++.........+.+..|..++.++ +||||+++++++......+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~- 129 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF- 129 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE-
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE-
Confidence 467899999999999999999765 6889999999765433333345688999999887 8999999999998765433
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++++... ....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+.....
T Consensus 130 lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 2222221 235689999999999999999999999 9999999999999999999999999999875544
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh-hhhhhhhhccCCCCCCCCcCc
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL-NLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||+.......... ........+.......+..
T Consensus 207 ~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~-- 284 (396)
T 4dc2_A 207 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRS-- 284 (396)
T ss_dssp TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTT--
T ss_pred CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCc--
Confidence 4555667899999999999999999999999999999999999999974432211111 1111222233333333322
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCH
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTM 1066 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~ 1066 (1075)
.+.++.+++.+||++||++||++
T Consensus 285 --~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 285 --LSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp --SCHHHHHHHHHHTCSCTTTSTTC
T ss_pred --CCHHHHHHHHHHhcCCHhHcCCC
Confidence 33458999999999999999996
No 77
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1e-35 Score=330.86 Aligned_cols=250 Identities=25% Similarity=0.424 Sum_probs=184.7
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhc--CCcCceeeEEEEeeccc---c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTE--IRHRNIVKFYGFCSHVR---H 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~---~ 888 (1075)
.++|++.+.||+|+||.||+|+. +|+.||||++... ..+.+..|.+++.. ++||||+++++++.... .
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 46899999999999999999987 5999999998532 13455566666665 79999999999875432 1
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMH--------NDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
.+.++++... ....+++..+++++.|+++||+||| +. +|+||||||+||+++.++.+||+|
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~D 156 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIAD 156 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECC
T ss_pred eeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEee
Confidence 1222222221 2346899999999999999999999 77 999999999999999999999999
Q ss_pred cccccccCCCCCc----eeccccccCccCccccccC------CCCcccchHhHHHHHHHHHhC----------CCCCCcc
Q 042958 953 FGIAKFLKPDSSN----WTELAGTYGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG----------KHPRDFI 1012 (1075)
Q Consensus 953 fGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~~p~~~~ 1012 (1075)
||+++........ .....||+.|+|||++.+. .++.++||||||+++|||++| +.||...
T Consensus 157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~ 236 (301)
T 3q4u_A 157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV 236 (301)
T ss_dssp CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence 9999876554332 2234799999999999876 455799999999999999999 7777543
Q ss_pred Cccccchhhhhhhh-hhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1013 SSMSSSSLNLNIAL-DEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1013 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.............. .....+..+. .......+..+.+++.+||+.||++|||++||++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~ 298 (301)
T 3q4u_A 237 VPNDPSFEDMRKVVCVDQQRPNIPN-RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLT 298 (301)
T ss_dssp SCSSCCHHHHHHHHTTSCCCCCCCG-GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHH
T ss_pred CCCCcchhhhhHHHhccCCCCCCCh-hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHh
Confidence 22211111111100 1111111111 1123456778999999999999999999999999885
No 78
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=3.6e-36 Score=337.38 Aligned_cols=256 Identities=25% Similarity=0.326 Sum_probs=190.8
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc---h
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS---L 890 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---l 890 (1075)
.++|++.+.||+|+||.||+|+.. ++.||||++... ......+..|+.++++++||||+++++++...... +
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecC----chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 468889999999999999999876 899999998642 22345667799999999999999999999765431 2
Q ss_pred hheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCCeEEecCCCCCeeeCCCCCceEecccc
Q 042958 891 AMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDC-------FPPIVHRDISSKNVLLDFDNEAHVSDFGI 955 (1075)
Q Consensus 891 ~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------~~~ivH~Dlk~~Nill~~~~~~kl~DfGl 955 (1075)
.++++... ....+++..++.++.|+++||+|||+.. .++|+||||||+||+++.++.+||+|||+
T Consensus 98 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~ 177 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177 (322)
T ss_dssp EEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCc
Confidence 22222221 1345899999999999999999999861 23899999999999999999999999999
Q ss_pred ccccCCCCCc--eeccccccCccCcccccc-----CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh--------
Q 042958 956 AKFLKPDSSN--WTELAGTYGYVAPELAYT-----MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL-------- 1020 (1075)
Q Consensus 956 a~~~~~~~~~--~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~-------- 1020 (1075)
++.+...... .....||+.|+|||++.+ ..++.++||||||+++|||++|+.||...........
T Consensus 178 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~ 257 (322)
T 3soc_A 178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP 257 (322)
T ss_dssp CEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSC
T ss_pred ccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCC
Confidence 9876644322 334579999999999886 3566789999999999999999999975432211000
Q ss_pred hhhhhhhhccCCCCCC-CC--cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1021 NLNIALDEMLDPRLPT-PS--CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1021 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
................ .. ......+..+.+++.+||+.||++|||++||++.|+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~ 314 (322)
T 3soc_A 258 SLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERIT 314 (322)
T ss_dssp CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 0111111111111111 11 112345667999999999999999999999999875
No 79
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=330.98 Aligned_cols=245 Identities=23% Similarity=0.319 Sum_probs=185.0
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCc-----------------------hhHHHHHHHHHHHHh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGE-----------------------MTFQQEFLNEVKALT 869 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~-----------------------~~~~~~~~~E~~~l~ 869 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++....... ....+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 46899999999999999999965 478999999986543111 112356889999999
Q ss_pred cCCcCceeeEEEEeeccc-cchhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCe
Q 042958 870 EIRHRNIVKFYGFCSHVR-HSLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNV 940 (1075)
Q Consensus 870 ~l~h~niv~l~~~~~~~~-~~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Ni 940 (1075)
+++||||+++++++.... ..+.++++.. .....+++.++..++.|+++||+|||+. +|+||||||+||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Ni 168 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNL 168 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGE
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHE
Confidence 999999999999997632 2222222221 1234689999999999999999999999 999999999999
Q ss_pred eeCCCCCceEeccccccccCCCCCceeccccccCccCccccccCC---CCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 941 LLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMK---VTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 941 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
+++.++.+||+|||+++.............||+.|+|||.+.+.. ++.++||||+|+++|||++|+.||.......
T Consensus 169 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~- 247 (298)
T 2zv2_A 169 LVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC- 247 (298)
T ss_dssp EECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-
T ss_pred EECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHH-
Confidence 999999999999999988765554555678999999999988765 3788999999999999999999996432211
Q ss_pred chhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1018 SSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.......+. ....+..+.+++.+||+.||++|||++|+++
T Consensus 248 -------~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 248 -------LHSKIKSQALEFPD--QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp -------HHHHHHHCCCCCCS--SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred -------HHHHHhcccCCCCC--ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 11111111111110 1123346899999999999999999999975
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-35 Score=340.71 Aligned_cols=311 Identities=19% Similarity=0.159 Sum_probs=205.0
Q ss_pred CCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 71 SFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
.++++++|++++|.++..-+..++.+++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45778888888888773333346778888888888888876666778888888888888888877666666666666666
Q ss_pred ecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCC
Q 042958 151 ALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (1075)
++++|.++.+++..|.++++|++|++++|.+++..+..|..+++|++|++++|++++. .+..+++|++|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 6666666665555556666666666666666655555566666666666666665532 1334445555555555443
Q ss_pred CCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG 310 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 310 (1075)
+ +...++ |++|++++|.++.. |.. ..++|+.|++++|.+++. ..+.
T Consensus 200 ~-----~~~~~~------------------------L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 200 T-----LAIPIA------------------------VEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp E-----EECCSS------------------------CSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG
T ss_pred c-----cCCCCc------------------------ceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc
Confidence 2 122234 45555555555432 211 124566666666666643 3566
Q ss_pred ccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCccccee
Q 042958 311 NLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSML 390 (1075)
Q Consensus 311 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 390 (1075)
.+++|++|++++|.+++..|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 66777777777777766666677777777777777777764 4555667778888888888774 456667778888888
Q ss_pred eeccccccccCChhhccCCCCCeEEeecccccc
Q 042958 391 SLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSG 423 (1075)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 423 (1075)
++++|+++.. + +..+++|+.|++++|.++.
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 8888888644 2 6677888888888888875
No 81
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=9.2e-36 Score=338.88 Aligned_cols=245 Identities=21% Similarity=0.275 Sum_probs=193.0
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|... +|+.||+|++...... ....+.+.+|++++++++||||+++++++.+....+.
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 3567999999999999999999664 7999999999765433 3345779999999999999999999999987654432
Q ss_pred heecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC---CceEecccccccc
Q 042958 892 MILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN---EAHVSDFGIAKFL 959 (1075)
Q Consensus 892 ~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfGla~~~ 959 (1075)
+ ++.. .....+++.++..++.||++||+|||+. +|+||||||+||+++.++ .+||+|||+++..
T Consensus 106 v-~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~ 181 (362)
T 2bdw_A 106 V-FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 181 (362)
T ss_dssp E-ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred E-EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence 2 2211 1234578999999999999999999999 999999999999998654 5999999999876
Q ss_pred CCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.......+..
T Consensus 182 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~--------~~~~~i~~~~~~~~~~ 252 (362)
T 2bdw_A 182 NDS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--------RLYAQIKAGAYDYPSP 252 (362)
T ss_dssp TTC-CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCTT
T ss_pred cCC-cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhCCCCCCcc
Confidence 643 3334568999999999999989999999999999999999999999643221 1112222222222222
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+.++.+++.+||+.||++|||++|+++
T Consensus 253 ~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 253 EWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 23344567999999999999999999999976
No 82
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.6e-35 Score=334.21 Aligned_cols=245 Identities=22% Similarity=0.317 Sum_probs=190.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++...........+.+.+|+.+++++ +||||+++++++......+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~- 86 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF- 86 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE-
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEE-
Confidence 357888999999999999999765 6899999999765444555567789999999988 8999999999997755432
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++++... ....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 87 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 2222221 135688999999999999999999999 9999999999999999999999999999875544
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccch-hhhhhhhhhccCCCCCCCCcCc
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSS-LNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||.......... .........+.......+.
T Consensus 164 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~--- 240 (345)
T 3a8x_A 164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR--- 240 (345)
T ss_dssp TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCT---
T ss_pred CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCC---
Confidence 445566789999999999999999999999999999999999999997432211110 0111112222222222222
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCH
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTM 1066 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~ 1066 (1075)
..+..+.+++.+||+.||++||++
T Consensus 241 -~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 241 -SLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -TSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred -CCCHHHHHHHHHHhcCCHhHCCCC
Confidence 233468999999999999999996
No 83
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=331.89 Aligned_cols=243 Identities=23% Similarity=0.423 Sum_probs=187.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.++|++.+.||+|+||.||+|... .+..||||++.... .....+.+.+|+.++++++||||+++++++...+..
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 125 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA 125 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence 356788899999999999999764 34569999997542 344467899999999999999999999999775543
Q ss_pred hhheecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 890 LAMILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 890 l~~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
+. +++.. .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 126 ~l-v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 201 (325)
T 3kul_A 126 MI-VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201 (325)
T ss_dssp EE-EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred EE-EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence 22 22211 1234689999999999999999999999 9999999999999999999999999999887
Q ss_pred CCCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC-CCC
Q 042958 960 KPDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD-PRL 1034 (1075)
Q Consensus 960 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1034 (1075)
...... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||....... ....+.. ...
T Consensus 202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--------~~~~~~~~~~~ 273 (325)
T 3kul_A 202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--------VISSVEEGYRL 273 (325)
T ss_dssp C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--------HHHHHHTTCCC
T ss_pred ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--------HHHHHHcCCCC
Confidence 654322 122345778999999998899999999999999999999 999986433211 1111111 122
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+.+ ...+..+.+++.+||+.||++|||++||++.|+
T Consensus 274 ~~~----~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~ 309 (325)
T 3kul_A 274 PAP----MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLD 309 (325)
T ss_dssp CCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCC----CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 222 223446999999999999999999999999885
No 84
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=340.94 Aligned_cols=243 Identities=21% Similarity=0.315 Sum_probs=186.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|+.+ +|+.||||++...........+.+..|.++++.+ +||||+++++++...+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 4578999999999999999999665 6899999998653222223356788999999988 7999999999998765432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+....
T Consensus 101 -lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 -FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp -EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred -EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 2222221 235689999999999999999999999 999999999999999999999999999987555
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+..
T Consensus 177 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------~~~~~~i~~~~~~~p~~-- 246 (353)
T 3txo_A 177 NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--------DDLFEAILNDEVVYPTW-- 246 (353)
T ss_dssp ---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCTT--
T ss_pred CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCCC--
Confidence 44555667899999999999999999999999999999999999999974322 11222333333333322
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCH------HHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTM------PKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 1071 (1075)
.+..+.+++.+|+++||++||++ +|+++
T Consensus 247 --~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 247 --LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp --SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred --CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 23458999999999999999998 66664
No 85
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.3e-35 Score=325.19 Aligned_cols=240 Identities=21% Similarity=0.309 Sum_probs=168.3
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||.||+|.. .+|+.||+|++...........+.+.+|+++++.++||||+++++++.+.+..+.+
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv- 91 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV- 91 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE-
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE-
Confidence 6799999999999999999965 57999999999765544444467899999999999999999999999875543222
Q ss_pred ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 894 LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 894 ~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
++.. .....+++.++++++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++....... .
T Consensus 92 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~ 167 (275)
T 2eue_A 92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN-F 167 (275)
T ss_dssp EECCCEEHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC---------
T ss_pred ehhcCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccCcc-c
Confidence 2211 1234689999999999999999999999 99999999999999999999999999998765432 2
Q ss_pred eeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHH
Q 042958 966 WTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDK 1044 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1075)
.....||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||+..... .....+.......+. ..
T Consensus 168 ~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~----~~ 235 (275)
T 2eue_A 168 LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--------VLFKNISNGVYTLPK----FL 235 (275)
T ss_dssp -------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCT----TS
T ss_pred ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCc----cC
Confidence 344579999999999987765 78999999999999999999999743221 111112222222222 22
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1045 LISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1045 ~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+..+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 236 SPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 345899999999999999999999976
No 86
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.8e-36 Score=334.40 Aligned_cols=241 Identities=21% Similarity=0.275 Sum_probs=190.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||+|.+... ......+.+|+.+++.++||||+++++++.+.+..+.
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l- 78 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK----GTDQVLVKKEISILNIARHRNILHLHESFESMEELVM- 78 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE-
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC----cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEE-
Confidence 467889999999999999999664 6899999998643 2235678899999999999999999999977554322
Q ss_pred eecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC--CCCceEeccccccccC
Q 042958 893 ILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF--DNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~DfGla~~~~ 960 (1075)
+++.. .....+++.++..++.|+++||+|||+. +|+||||||+||+++. ++.+||+|||+++.+.
T Consensus 79 v~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~ 155 (321)
T 1tki_A 79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK 155 (321)
T ss_dssp EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence 22211 1124689999999999999999999999 9999999999999997 7899999999998876
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ......+.......+...
T Consensus 156 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~~ 226 (321)
T 1tki_A 156 PG-DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--------QQIIENIMNAEYTFDEEA 226 (321)
T ss_dssp TT-CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--------HHHHHHHHHTCCCCCHHH
T ss_pred CC-CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--------HHHHHHHHcCCCCCChhh
Confidence 43 334556799999999999988899999999999999999999999974322 112222222222222111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.++.+++.+|++.||++|||+.|+++
T Consensus 227 ~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 227 FKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 2233457999999999999999999999986
No 87
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=3.1e-36 Score=344.08 Aligned_cols=254 Identities=23% Similarity=0.359 Sum_probs=195.7
Q ss_pred cHHHHHHHhcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceee
Q 042958 806 VYEEIIRATNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVK 878 (1075)
Q Consensus 806 ~~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 878 (1075)
...++....++|++.+.||+|+||.||+|++ .+++.||||++.... .....+.+.+|+++++++ +||||++
T Consensus 13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC--CHHHHHHHHHHHHHHHhhcCCcceee
Confidence 3455566678999999999999999999963 346899999997542 333457899999999999 8999999
Q ss_pred EEEEeeccccchhheecCccc-----------------------------------------------------------
Q 042958 879 FYGFCSHVRHSLAMILSNNAA----------------------------------------------------------- 899 (1075)
Q Consensus 879 l~~~~~~~~~~l~~~~~~~~~----------------------------------------------------------- 899 (1075)
++++|...+..+.++++....
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 999998765533333222111
Q ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 900 ----------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 900 ----------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
...+++..++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~ 247 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 247 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence 11288999999999999999999999 99999999999999999999999999998765433
Q ss_pred C--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 964 S--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 964 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
. ......||+.|+|||++.+..++.++||||||+++|||++ |+.||........ ......... ....+.
T Consensus 248 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~----~~~~~~~~~--~~~~~~-- 319 (359)
T 3vhe_A 248 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE----FCRRLKEGT--RMRAPD-- 319 (359)
T ss_dssp TCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH----HHHHHHHTC--CCCCCT--
T ss_pred cchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH----HHHHHHcCC--CCCCCC--
Confidence 2 2334568899999999999999999999999999999998 9999975432211 111111111 111111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+.++.+++.+||+.||++|||++||++.|+
T Consensus 320 --~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 351 (359)
T 3vhe_A 320 --YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 351 (359)
T ss_dssp --TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence 22346899999999999999999999999875
No 88
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3e-35 Score=321.03 Aligned_cols=241 Identities=26% Similarity=0.417 Sum_probs=190.5
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|+.+++..||||++...... .+++.+|++++++++||||+++++++......+.+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv- 81 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS----EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIV- 81 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE-
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEE-
Confidence 4678889999999999999999988889999999754322 46789999999999999999999999765543222
Q ss_pred ecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 894 LSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 894 ~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++... ....+++.+++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 82 TEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred EEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 22211 134589999999999999999999999 99999999999999999999999999998765443
Q ss_pred Cc-eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCCCcC
Q 042958 964 SN-WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTPSCI 1040 (1075)
Q Consensus 964 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1040 (1075)
.. .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||+...... ........ ....+.
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~-- 228 (268)
T 3sxs_A 159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE--------VVLKVSQGHRLYRPH-- 228 (268)
T ss_dssp EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH--------HHHHHHTTCCCCCCT--
T ss_pred hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH--------HHHHHHcCCCCCCCC--
Confidence 22 223446678999999998889999999999999999999 999997433211 11111111 111111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 229 --~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~ 260 (268)
T 3sxs_A 229 --LASDTIYQIMYSCWHELPEKRPTFQQLLSSIE 260 (268)
T ss_dssp --TSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHG
T ss_pred --cChHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 12345899999999999999999999999885
No 89
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=8.3e-36 Score=335.24 Aligned_cols=245 Identities=24% Similarity=0.419 Sum_probs=184.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCE----EEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEI----VAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|+..+.||+|+||.||+|... +++. ||+|++.... .....+++.+|+.++++++||||++++++|.....
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 91 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTSTV 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe
Confidence 367888999999999999999754 4543 6888876432 22335789999999999999999999999987664
Q ss_pred chhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.+..... .....+++..++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 433332221 1235689999999999999999999999 99999999999999999999999999998776
Q ss_pred CCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 961 PDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 961 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
..... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||+....... ....... ...+.+
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-----~~~~~~~--~~~~~~ 241 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-----SSILEKG--ERLPQP 241 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-----HHHHHTT--CCCCCC
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH-----HHHHHcC--CCCCCC
Confidence 54332 223456889999999999999999999999999999999 9999975432211 1111111 112222
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. ..+..+.+++.+||+.||++|||++||++.|+
T Consensus 242 ~----~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~ 274 (327)
T 3poz_A 242 P----ICTIDVYMIMVKCWMIDADSRPKFRELIIEFS 274 (327)
T ss_dssp T----TBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred c----cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 2 23346899999999999999999999998774
No 90
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=329.66 Aligned_cols=253 Identities=19% Similarity=0.295 Sum_probs=193.5
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-chh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH-SLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~l~ 891 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++..... ....+.+.+|++++++++||||+++++++..... ...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence 357888999999999999999665 699999999875322 2225678899999999999999999999876543 222
Q ss_pred heecCc------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee----CCCCCceEecccc
Q 042958 892 MILSNN------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL----DFDNEAHVSDFGI 955 (1075)
Q Consensus 892 ~~~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~DfGl 955 (1075)
++++.. .....+++.+++.++.|+++||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~ 162 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (319)
T ss_dssp EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence 222221 1122389999999999999999999999 99999999999999 7788899999999
Q ss_pred ccccCCCCCceeccccccCccCccccc--------cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAY--------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
++...... ......||+.|+|||++. +..++.++||||||+++|||++|+.||..................
T Consensus 163 a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (319)
T 4euu_A 163 ARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (319)
T ss_dssp CEECCTTC-CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH
T ss_pred ceecCCCC-ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc
Confidence 98776543 334567999999999886 567899999999999999999999999744332211111111111
Q ss_pred hc-----------------cCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhh
Q 042958 1028 EM-----------------LDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQL 1072 (1075)
Q Consensus 1028 ~~-----------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1072 (1075)
.. ....++............+.+++.+||+.||++|||++|+++-
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h 303 (319)
T 4euu_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE 303 (319)
T ss_dssp HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhc
Confidence 10 0112233334556778889999999999999999999999875
No 91
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.1e-35 Score=340.78 Aligned_cols=245 Identities=23% Similarity=0.383 Sum_probs=190.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|... +++.||||+++.. ......++|.+|++++++++||||++++++|...+..+
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~- 188 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET--LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY- 188 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT--SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE-
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc--CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE-
Confidence 3467888999999999999999776 7999999998754 23334567899999999999999999999997655432
Q ss_pred heecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 892 MILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 892 ~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 189 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 189 IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265 (377)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence 2222211 134588999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCce--eccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 962 DSSNW--TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 962 ~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
..... ....+++.|+|||.+.+..++.++||||||+++|||++ |+.||....... ....... ..+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~-----~~~~~~~--~~~~~~~~ 338 (377)
T 3cbl_A 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ-----TREFVEK--GGRLPCPE 338 (377)
T ss_dssp SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH-----HHHHHHT--TCCCCCCT
T ss_pred CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHc--CCCCCCCC
Confidence 21111 12235778999999998889999999999999999998 999987543211 1111111 11222222
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++||++.|+
T Consensus 339 ----~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~ 370 (377)
T 3cbl_A 339 ----LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQ 370 (377)
T ss_dssp ----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 23346899999999999999999999999875
No 92
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=4.9e-36 Score=340.24 Aligned_cols=245 Identities=20% Similarity=0.216 Sum_probs=189.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCC--CCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPL--PGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... .......+.+.+|+.+++.++||||+++++++...+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 35789999999999999999965 479999999985321 011112467999999999999999999999998755432
Q ss_pred hheecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC---ceEeccc
Q 042958 891 AMILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE---AHVSDFG 954 (1075)
Q Consensus 891 ~~~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfG 954 (1075)
++++... ....+++..+..++.||++||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 103 -lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 103 -MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp -EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred -EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCc
Confidence 2222211 123478999999999999999999999 9999999999999987654 9999999
Q ss_pred cccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 955 IAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 955 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
+++.............||+.|+|||++.+..++.++||||+||++|||++|+.||..... .....+.....
T Consensus 179 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---------~~~~~i~~~~~ 249 (351)
T 3c0i_A 179 VAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE---------RLFEGIIKGKY 249 (351)
T ss_dssp TCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH---------HHHHHHHHTCC
T ss_pred ceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH---------HHHHHHHcCCC
Confidence 998876654445567899999999999999999999999999999999999999974211 11122222222
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+.......+..+.+++.+||+.||++|||+.|+++
T Consensus 250 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 250 KMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 2211111223456899999999999999999999986
No 93
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=332.96 Aligned_cols=246 Identities=20% Similarity=0.259 Sum_probs=190.5
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc---hhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE---MTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.+.|++.+.||+|+||.||+|... +|+.||||++....... ....+.+.+|+.++++++||||+++++++......
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 356888999999999999999665 69999999987643221 11357899999999999999999999999875543
Q ss_pred hhheecC-c-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC----CceEecccccc
Q 042958 890 LAMILSN-N-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN----EAHVSDFGIAK 957 (1075)
Q Consensus 890 l~~~~~~-~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfGla~ 957 (1075)
+.++... . .....+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~ 166 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 166 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence 3222111 1 1235689999999999999999999999 999999999999999887 89999999998
Q ss_pred ccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 958 FLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......+
T Consensus 167 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~~~~~~~~~~ 237 (326)
T 2y0a_A 167 KIDFG-NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--------ETLANVSAVNYEFE 237 (326)
T ss_dssp ECCTT-SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--------HHHHHHHHTCCCCC
T ss_pred ECCCC-CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--------HHHHHHHhcCCCcC
Confidence 77543 2334567999999999999899999999999999999999999999643221 11111111111111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.......+..+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 238 DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111223456899999999999999999999986
No 94
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2.4e-35 Score=336.88 Aligned_cols=244 Identities=22% Similarity=0.434 Sum_probs=179.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
..+|++.+.||+|+||.||+|+.. ++..||||+++... .....++|.+|+.++++++||||+++++++......
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 121 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV 121 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence 367999999999999999999764 57789999997542 334467899999999999999999999999875543
Q ss_pred hhhe-ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 890 LAMI-LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 890 l~~~-~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
+.++ +... .....+++.+++.++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 2222 1111 1234689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCC
Q 042958 961 PDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLP 1035 (1075)
Q Consensus 961 ~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1035 (1075)
..... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||....... ....+... +.+
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~--------~~~~i~~~~~~~ 270 (373)
T 2qol_A 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLP 270 (373)
T ss_dssp ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH--------HHHHHHTTEECC
T ss_pred cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--------HHHHHHcCCCCC
Confidence 44322 122335678999999999999999999999999999998 999986432211 11111111 112
Q ss_pred CCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1036 TPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1036 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.+ ...+..+.+++.+||+.||++||+++||++.|+
T Consensus 271 ~~----~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~ 305 (373)
T 2qol_A 271 PP----MDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305 (373)
T ss_dssp CC----TTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CC----ccccHHHHHHHHHHhCcChhhCcCHHHHHHHHH
Confidence 22 123446999999999999999999999999874
No 95
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=329.19 Aligned_cols=238 Identities=22% Similarity=0.263 Sum_probs=180.2
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchhh
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~~ 892 (1075)
++|+..++||+|+||+||+|... +|+.||||++......... ..++..|+..+.++ +||||++++++|.+.+..+.+
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKD-RARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHH-HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHH-HHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 57999999999999999999765 7999999998765443333 34555666665555 999999999999876554322
Q ss_pred eecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 893 ILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 893 ~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+.... .....++|..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 136 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~-~ 211 (311)
T 3p1a_A 136 TELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA-G 211 (311)
T ss_dssp EECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred EeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC-C
Confidence 21111 1134689999999999999999999999 9999999999999999999999999999876543 2
Q ss_pred ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHH
Q 042958 965 NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDK 1044 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1075)
......||+.|+|||++.+ .++.++||||||+++|||++|..|+..... ...+.....+. ......
T Consensus 212 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~ 277 (311)
T 3p1a_A 212 AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG-----------WQQLRQGYLPP--EFTAGL 277 (311)
T ss_dssp ---CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH-----------HHHHTTTCCCH--HHHTTS
T ss_pred CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH-----------HHHHhccCCCc--ccccCC
Confidence 3344579999999999876 789999999999999999999776542111 11111111111 111223
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1045 LISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1045 ~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+..+.+++.+||+.||++|||++|+++
T Consensus 278 ~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 278 SSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 456999999999999999999999986
No 96
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=335.90 Aligned_cols=244 Identities=25% Similarity=0.352 Sum_probs=188.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+++++.++|||||++++++.+....+.+
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367889999999999999999654 6899999998643212222356788999999999999999999999876543322
Q ss_pred eecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++.. .....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.+...
T Consensus 94 -~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~- 168 (384)
T 4fr4_A 94 -VDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE- 168 (384)
T ss_dssp -ECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-
T ss_pred -EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC-
Confidence 2221 1234689999999999999999999999 9999999999999999999999999999876543
Q ss_pred CceeccccccCccCcccccc---CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 964 SNWTELAGTYGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||......... .....+.......+.
T Consensus 169 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~p~-- 241 (384)
T 4fr4_A 169 TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSK-----EIVHTFETTVVTYPS-- 241 (384)
T ss_dssp CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHH-----HHHHHHHHCCCCCCT--
T ss_pred CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHH-----HHHHHHhhcccCCCC--
Confidence 33456789999999999874 45899999999999999999999999743322111 111111112222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCC-HHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPT-MPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~ 1071 (1075)
..+..+.+++.+||+.||++||+ +++|.+
T Consensus 242 --~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 242 --AWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp --TSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred --cCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 22346899999999999999998 777764
No 97
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=4.7e-35 Score=327.55 Aligned_cols=252 Identities=19% Similarity=0.305 Sum_probs=174.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++...... ...+.+.+|++++++++||||+++++++...+..+.+
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 81 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE--GTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV 81 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTT--CSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence 467999999999999999999654 6999999998754322 2236788999999999999999999999876543222
Q ss_pred eecCcc--------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 893 ILSNNA--------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 893 ~~~~~~--------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
++... ....+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 82 -~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 157 (317)
T 2pmi_A 82 -FEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA 157 (317)
T ss_dssp -EECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred -EEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence 22111 113588999999999999999999999 999999999999999999999999999988
Q ss_pred cCCCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh----------hhh
Q 042958 959 LKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI----------ALD 1027 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~----------~~~ 1027 (1075)
............||+.|+|||++.+. .++.++||||+||++|||++|+.||............... ...
T Consensus 158 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 237 (317)
T 2pmi_A 158 FGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVT 237 (317)
T ss_dssp TTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGG
T ss_pred cCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhh
Confidence 76554445566899999999998764 6899999999999999999999999754321100000000 000
Q ss_pred hc--cCCCCCCC-Cc---------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EM--LDPRLPTP-SC---------IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~--~~~~~~~~-~~---------~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. ..+..... .. .....+.++.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00 00000000 00 00112346899999999999999999999975
No 98
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1e-34 Score=320.34 Aligned_cols=246 Identities=30% Similarity=0.469 Sum_probs=189.4
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHH----HHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQ----QEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++........... +.+.+|++++++++||||+++++++.+...
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPR 97 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTE
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCe
Confidence 46788899999999999999966 4799999999876543322211 678999999999999999999999876553
Q ss_pred chhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCCeeeCCCCC-----ceEecc
Q 042958 889 SLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPP--IVHRDISSKNVLLDFDNE-----AHVSDF 953 (1075)
Q Consensus 889 ~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~-----~kl~Df 953 (1075)
+.+.+... .....+++..++.++.|++.|++|||+. + |+||||||+||+++.++. +||+||
T Consensus 98 -lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df 173 (287)
T 4f0f_A 98 -MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADF 173 (287)
T ss_dssp -EEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred -EEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence 22222111 1244689999999999999999999999 7 999999999999988876 999999
Q ss_pred ccccccCCCCCceeccccccCccCccccc--cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC
Q 042958 954 GIAKFLKPDSSNWTELAGTYGYVAPELAY--TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 954 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
|+++.... ......||+.|+|||++. ...++.++||||+|+++|||++|+.||.......... ..........
T Consensus 174 g~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~--~~~~~~~~~~ 248 (287)
T 4f0f_A 174 GLSQQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF--INMIREEGLR 248 (287)
T ss_dssp TTCBCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHH--HHHHHHSCCC
T ss_pred Cccccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHH--HHHHhccCCC
Confidence 99985432 344567999999999984 4557899999999999999999999997543221100 0111111111
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1032 PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1032 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+.. ....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 249 ~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~ 285 (287)
T 4f0f_A 249 PTI------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELS 285 (287)
T ss_dssp CCC------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCC------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 111 1233456999999999999999999999999875
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-35 Score=354.24 Aligned_cols=312 Identities=20% Similarity=0.162 Sum_probs=211.2
Q ss_pred CCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 71 SFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
.+++++.|++++|.+.+..+..++.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678888888888875444456778888888888888887777788888888888888888877666666666666666
Q ss_pred ecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCC
Q 042958 151 ALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (1075)
+|++|.++++++..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++.. +..+++|+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~---------- 195 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLF---------- 195 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCS----------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhh----------
Confidence 66666666555555556666666666666665555555555555555555555555321 33344444
Q ss_pred CCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG 310 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 310 (1075)
.|++++|.+++. ...++|+.|++++|.++...+.. .++|+.|+|++|.+++ +..+.
T Consensus 196 --------------~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 196 --------------HANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp --------------EEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGG
T ss_pred --------------hhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhc
Confidence 444444444421 12234555555555555322211 1467777777777764 35677
Q ss_pred ccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCccccee
Q 042958 311 NLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSML 390 (1075)
Q Consensus 311 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 390 (1075)
.+++|++|+|++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+. .+|..+..+++|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 77777777777777777777777777788888888887775 4666677888888888888885 567778888899999
Q ss_pred eeccccccccCChhhccCCCCCeEEeeccccccc
Q 042958 391 SLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGS 424 (1075)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 424 (1075)
+|++|++++.. +..+++|+.|++++|.+++.
T Consensus 330 ~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 99999987542 66788999999999998753
No 100
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3.4e-35 Score=331.53 Aligned_cols=240 Identities=22% Similarity=0.409 Sum_probs=184.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 888 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++.... .....+.+.+|++++++++||||++++++|.+...
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 82 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ 82 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS--TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC--chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence 467888999999999999999775 79999999997543 23346789999999999999999999998865432
Q ss_pred ----------------------------------------------------chhheecCc------------cccCCCC
Q 042958 889 ----------------------------------------------------SLAMILSNN------------AAAKDLG 904 (1075)
Q Consensus 889 ----------------------------------------------------~l~~~~~~~------------~~~~~l~ 904 (1075)
.+.++++.. .......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~ 162 (332)
T 3qd2_B 83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE 162 (332)
T ss_dssp HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSC
T ss_pred hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchh
Confidence 011222221 1123346
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC------------ceeccccc
Q 042958 905 WTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS------------NWTELAGT 972 (1075)
Q Consensus 905 ~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~------------~~~~~~gt 972 (1075)
+..+++++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++....... ......||
T Consensus 163 ~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt 239 (332)
T 3qd2_B 163 HGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT 239 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-C
T ss_pred hHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCC
Confidence 677899999999999999999 999999999999999999999999999988765421 22345799
Q ss_pred cCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHH
Q 042958 973 YGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVA 1052 (1075)
Q Consensus 973 ~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 1052 (1075)
+.|+|||++.+..++.++||||+|+++|||++|..|+.. .............+. ........+.+++
T Consensus 240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~li 306 (332)
T 3qd2_B 240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME----------RVRIITDVRNLKFPL---LFTQKYPQEHMMV 306 (332)
T ss_dssp GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH----------HHHHHHHHHTTCCCH---HHHHHCHHHHHHH
T ss_pred cCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH----------HHHHHHHhhccCCCc---ccccCChhHHHHH
Confidence 999999999999999999999999999999999877531 111122222222221 2334456789999
Q ss_pred HHccCCCCCCCCCHHHHHh
Q 042958 1053 ISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1053 ~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+||+.||++|||++|+++
T Consensus 307 ~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 307 QDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHCSSGGGSCCHHHHHH
T ss_pred HHHccCCCCcCCCHHHHhh
Confidence 9999999999999999986
No 101
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=8.7e-36 Score=335.71 Aligned_cols=245 Identities=21% Similarity=0.280 Sum_probs=189.9
Q ss_pred HHHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeecccc
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 888 (1075)
....++|++.+.||+|+||.||+|+.+ +|+.||||+++..........+.+..|..+++.+ +||||+++++++.+.+.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 345688999999999999999999765 6899999998643211112246678899999877 99999999999987654
Q ss_pred chhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 889 SLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 889 ~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
.+ ++++... ....+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~~-lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 93 LF-FVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EE-EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EE-EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 32 2222221 135689999999999999999999999 9999999999999999999999999999875
Q ss_pred CCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
..........+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.......+.
T Consensus 169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~- 239 (345)
T 1xjd_A 169 MLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--------ELFHSIRMDNPFYPR- 239 (345)
T ss_dssp CCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT-
T ss_pred ccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--------HHHHHHHhCCCCCCc-
Confidence 54444456678999999999999999999999999999999999999999743221 111222222222221
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCCHH-HHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPTMP-KVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs~~-evl~ 1071 (1075)
..+.++.+++.+||+.||++||++. ||++
T Consensus 240 ---~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 240 ---WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp ---TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred ---ccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 2234689999999999999999997 6653
No 102
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=4.8e-35 Score=343.62 Aligned_cols=253 Identities=21% Similarity=0.270 Sum_probs=185.8
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 888 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ......+++.+|+.+++.++||||+++++++.....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 46899999999999999999955 479999999997542 233446788999999999999999999999865432
Q ss_pred -chhheecCccc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 889 -SLAMILSNNAA------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 889 -~l~~~~~~~~~------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
.++++++.... ...+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+....
T Consensus 140 ~~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 216 (464)
T 3ttj_A 140 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 216 (464)
T ss_dssp CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-----
T ss_pred CeEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecCC
Confidence 12222222211 23488999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh--------------hhhhhh
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN--------------LNIALD 1027 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~--------------~~~~~~ 1027 (1075)
. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||............ ......
T Consensus 217 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~ 295 (464)
T 3ttj_A 217 S-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR 295 (464)
T ss_dssp C-CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHH
T ss_pred C-cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhh
Confidence 3 2345568999999999999999999999999999999999999999754321100000 000001
Q ss_pred hccCCCC----------------CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EMLDPRL----------------PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~~~~~----------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..... +...........++.+++.+|++.||++|||++|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 296 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1111100 0000111123567999999999999999999999986
No 103
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.6e-35 Score=325.30 Aligned_cols=251 Identities=24% Similarity=0.401 Sum_probs=186.6
Q ss_pred hcCCCCCceecccCceEEEEEEE-----CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-----ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++...+.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence 46788899999999999999974 36899999998743 34446789999999999999999999999865432
Q ss_pred -chhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccc
Q 042958 889 -SLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAK 957 (1075)
Q Consensus 889 -~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~ 957 (1075)
.+.++++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 1222222211 123489999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcc--------ccchhhhhhhh
Q 042958 958 FLKPDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSM--------SSSSLNLNIAL 1026 (1075)
Q Consensus 958 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~--------~~~~~~~~~~~ 1026 (1075)
........ .....++..|+|||.+.+..++.++||||||+++|||++|..|+...... ...........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHH
Confidence 76544321 22345778899999999999999999999999999999999998632211 00000000111
Q ss_pred hhccC-CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1027 DEMLD-PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1027 ~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..... .+.+.+ ...+.++.+++.+||+.||++|||++|+++.|+
T Consensus 243 ~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~ 287 (295)
T 3ugc_A 243 ELLKNNGRLPRP----DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 287 (295)
T ss_dssp HHHHTTCCCCCC----TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred HHHhccCcCCCC----cCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 11111 122222 233456999999999999999999999999875
No 104
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3e-35 Score=329.64 Aligned_cols=244 Identities=25% Similarity=0.351 Sum_probs=186.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||||++...... ...+.+.+|+.+++.++||||+++++++......+.+
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 83 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc--chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 368899999999999999999665 7999999998654322 2246788999999999999999999999876553322
Q ss_pred e-ecC-------ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC-
Q 042958 893 I-LSN-------NAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS- 963 (1075)
Q Consensus 893 ~-~~~-------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~- 963 (1075)
+ +.. ......+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 84 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 84 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 2 111 11234589999999999999999999999 99999999999999999999999999998664332
Q ss_pred -CceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 964 -SNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 964 -~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||......... ...........+ ..
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~-------~~~~~~~~~~~~--~~ 231 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-------YSDWKEKKTYLN--PW 231 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH-------HHHHHTTCTTST--TG
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH-------HHHHhcccccCC--cc
Confidence 22345679999999999987775 77899999999999999999999754322110 111111111111 12
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+..+.+++.+||+.||++|||++|+++
T Consensus 232 ~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 232 KKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 234456889999999999999999999986
No 105
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.8e-35 Score=346.00 Aligned_cols=245 Identities=22% Similarity=0.382 Sum_probs=191.7
Q ss_pred HHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
...++|++.+.||+|+||.||+|.+.++..||||+++... ...++|.+|++++++++||||+++++++......+.
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv 260 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYII 260 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS----BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEE
T ss_pred echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC----ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEE
Confidence 3456788889999999999999999889999999997532 125789999999999999999999999875433332
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+.+.... ....+++.++.+++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~ 337 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN 337 (454)
T ss_dssp ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence 2222111 123578889999999999999999999 9999999999999999999999999999876532
Q ss_pred CC-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 963 SS-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 963 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. ......+++.|+|||++.+..++.++||||||+++|||++ |+.||......+ ....... ..+.+.+.
T Consensus 338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~-----~~~~i~~--~~~~~~~~-- 408 (454)
T 1qcf_A 338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE-----VIRALER--GYRMPRPE-- 408 (454)
T ss_dssp HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHHHHHH--TCCCCCCT--
T ss_pred ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHc--CCCCCCCC--
Confidence 21 1123346788999999998899999999999999999999 999997433211 1111111 11222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.++..+.+++.+||+.||++|||+++|++.|+
T Consensus 409 --~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~ 440 (454)
T 1qcf_A 409 --NCPEELYNIMMRCWKNRPEERPTFEYIQSVLD 440 (454)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence 23446999999999999999999999999875
No 106
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.8e-35 Score=320.36 Aligned_cols=242 Identities=23% Similarity=0.404 Sum_probs=190.3
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|+..+.||+|+||.||+|...+++.||+|++...... .+++.+|++++++++||||+++++++.+....+.++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC----HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence 4678888999999999999999888999999999754322 367899999999999999999999998755432221
Q ss_pred -ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 894 -LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 894 -~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+... .....+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 161 (269)
T 4hcu_A 85 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 161 (269)
T ss_dssp ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred EeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence 1111 1234589999999999999999999999 999999999999999999999999999987654321
Q ss_pred -ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCCCcCc
Q 042958 965 -NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTPSCIV 1041 (1075)
Q Consensus 965 -~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1041 (1075)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+... ....+.
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~--- 230 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--------EVVEDISTGFRLYKPR--- 230 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--------HHHHHHHTTCCCCCCT---
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--------HHHHHHhcCccCCCCC---
Confidence 1223456778999999998999999999999999999999 99998743221 111111111 111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 231 -~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~ 262 (269)
T 4hcu_A 231 -LASTHVYQIMNHCWRERPEDRPAFSRLLRQLA 262 (269)
T ss_dssp -TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHccCCcccCcCHHHHHHHHH
Confidence 22346899999999999999999999999874
No 107
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=4e-35 Score=327.10 Aligned_cols=239 Identities=22% Similarity=0.331 Sum_probs=188.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|+.. +|+.||+|++...........+.+.+|+.+++.++||||+++++++.+....+ +
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~-l 83 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF-M 83 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE-E
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE-E
Confidence 367888999999999999999665 79999999986432112223467889999999999999999999998765432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 84 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 84 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 222221 235688999999999999999999999 9999999999999999999999999999875432
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
....+||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ......+.......+..
T Consensus 160 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--------~~~~~~i~~~~~~~p~~---- 225 (318)
T 1fot_A 160 --TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--------MKTYEKILNAELRFPPF---- 225 (318)
T ss_dssp --BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--------HHHHHHHHHCCCCCCTT----
T ss_pred --cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhCCCCCCCC----
Confidence 3346799999999999999999999999999999999999999964322 11122222222222222
Q ss_pred HHHHHHHHHHHccCCCCCCCC-----CHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRP-----TMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1071 (1075)
.+.++.+++.+|++.||++|| +++|+++
T Consensus 226 ~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 226 FNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp SCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred CCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 234589999999999999999 8888875
No 108
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.9e-35 Score=334.35 Aligned_cols=240 Identities=27% Similarity=0.395 Sum_probs=187.7
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
+.|+..+.||+|+||.||+|.. .+|+.||||++...........+++.+|++++++++||||+++++++......+.++
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4578889999999999999965 579999999997654444455678999999999999999999999997755432222
Q ss_pred -ecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc
Q 042958 894 -LSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 894 -~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 965 (1075)
+... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~--- 207 (348)
T 1u5q_A 134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA--- 207 (348)
T ss_dssp ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB---
T ss_pred ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCC---
Confidence 1111 1245689999999999999999999999 9999999999999999999999999999876432
Q ss_pred eeccccccCccCccccc---cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 966 WTELAGTYGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
....||+.|+|||++. +..++.++||||||+++|||++|+.||........ .........+... ..
T Consensus 208 -~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~-----~~~~~~~~~~~~~-----~~ 276 (348)
T 1u5q_A 208 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-----LYHIAQNESPALQ-----SG 276 (348)
T ss_dssp -CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-----HHHHHHSCCCCCC-----CT
T ss_pred -CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-----HHHHHhcCCCCCC-----CC
Confidence 3457999999999884 56789999999999999999999999864332110 0011111111111 11
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+..+.+++.+||+.||++|||++|+++
T Consensus 277 ~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 277 HWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 22345899999999999999999999986
No 109
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=323.06 Aligned_cols=242 Identities=26% Similarity=0.387 Sum_probs=168.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++...........+.+.+|+.++++++||||+++++++......+.+
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46788999999999999999966 57999999998643211222346789999999999999999999999876543222
Q ss_pred eecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++.. .....+++.+++.++.|+++|++|||+. +|+||||||+||+++.++.+||+|||.+......
T Consensus 90 -~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 90 -LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp -EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred -EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 2211 1135689999999999999999999999 9999999999999999999999999999877644
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
........||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ............+.
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~---- 233 (278)
T 3cok_A 166 HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN--------TLNKVVLADYEMPS---- 233 (278)
T ss_dssp --------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------------CCSSCCCCCT----
T ss_pred CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH--------HHHHHhhcccCCcc----
Confidence 444445678999999999999889999999999999999999999997433211 11111112222221
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 234 FLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp TSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 22346899999999999999999999986
No 110
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=7e-35 Score=327.40 Aligned_cols=242 Identities=23% Similarity=0.293 Sum_probs=179.1
Q ss_pred hcCCCCCceecccCceEEEEEEE----CCCCEEEEEEccCCCCC-chhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL----ASGEIVAVKKFHSPLPG-EMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~----~~g~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|+. .+|+.||+|++...... .......+.+|+.++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46789999999999999999976 47999999999764321 12234568899999999999999999999987554
Q ss_pred chhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 889 SLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 889 ~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
.+. +++... ....+++.+...++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~l-v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYL-ILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEE-EEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEE-EEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 332 222221 134578899999999999999999999 9999999999999999999999999999865
Q ss_pred CCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
...........||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--------~~~~~i~~~~~~~p~- 242 (327)
T 3a62_A 172 IHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK--------KTIDKILKCKLNLPP- 242 (327)
T ss_dssp -------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--------HHHHHHHHTCCCCCT-
T ss_pred ccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhCCCCCCC-
Confidence 54444445668999999999999999999999999999999999999999743221 112222222222222
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRP-----TMPKVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1071 (1075)
..+..+.+++.+||+.||++|| +++|+++
T Consensus 243 ---~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 243 ---YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp ---TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred ---CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 2234589999999999999999 7778765
No 111
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.1e-35 Score=322.79 Aligned_cols=247 Identities=26% Similarity=0.425 Sum_probs=179.6
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCc-hhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGE-MTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|+..+.||+|+||.||+|... |+.||||++....... ....+.+.+|+++++.++||||+++++++...+..+.
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l- 83 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL- 83 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE-
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE-
Confidence 367888999999999999999876 8999999987543222 2234678999999999999999999999987654322
Q ss_pred eecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC--------CCCceEeccccc
Q 042958 893 ILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF--------DNEAHVSDFGIA 956 (1075)
Q Consensus 893 ~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--------~~~~kl~DfGla 956 (1075)
+++.. .....+++..++.++.|+++|++|||+....+|+||||||+||+++. ++.+||+|||.+
T Consensus 84 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~ 163 (271)
T 3dtc_A 84 VMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163 (271)
T ss_dssp EEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred EEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence 22221 12456899999999999999999999993223999999999999986 678999999999
Q ss_pred cccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 957 KFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
+...... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ............
T Consensus 164 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~ 233 (271)
T 3dtc_A 164 REWHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA--------VAYGVAMNKLAL 233 (271)
T ss_dssp --------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH--------HHHHHHTSCCCC
T ss_pred ccccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--------HHHhhhcCCCCC
Confidence 8765432 234578999999999999999999999999999999999999997433211 111111111111
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+ .....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 234 ~--~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~ 269 (271)
T 3dtc_A 234 P--IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLT 269 (271)
T ss_dssp C--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred C--CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence 1 11223346999999999999999999999999885
No 112
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=332.93 Aligned_cols=243 Identities=23% Similarity=0.371 Sum_probs=183.5
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCc--CceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRH--RNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.+.||+|+||.||+|...+++.||||++..... .....+.+.+|+.++++++| |||+++++++......+.
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 467889999999999999999888899999999876542 33445789999999999976 999999999987654332
Q ss_pred heecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 892 MILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 892 ~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++ ++.+||+|||+++.+....
T Consensus 87 -v~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 87 -VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp -EECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred -EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 222211 235689999999999999999999999 999999999999997 6789999999998775443
Q ss_pred C--ceeccccccCccCcccccc-----------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhcc
Q 042958 964 S--NWTELAGTYGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEML 1030 (1075)
Q Consensus 964 ~--~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1030 (1075)
. ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ........
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-------~~~~~~~~ 234 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-------ISKLHAII 234 (343)
T ss_dssp --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-------HHHHHHHH
T ss_pred ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH-------HHHHHHHh
Confidence 2 2335679999999999865 67889999999999999999999999643211 11122222
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1031 DPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
++..... ........+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~--~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 235 DPNHEIE--FPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp CTTSCCC--CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cCCcccC--CcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 2221111 11112235899999999999999999999986
No 113
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=8.2e-35 Score=322.25 Aligned_cols=242 Identities=22% Similarity=0.327 Sum_probs=194.5
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..+.
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l- 92 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV- 92 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE-
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE-
Confidence 467888999999999999999665 688999999876544445556789999999999999999999999987654322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.++..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 93 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 93 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 222211 134689999999999999999999999 99999999999999999999999999998876554
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
.......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+.......+. .
T Consensus 170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~----~ 237 (294)
T 2rku_A 170 ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK--------ETYLRIKKNEYSIPK----H 237 (294)
T ss_dssp CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHTTCCCCCT----T
T ss_pred cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHhhccCCCcc----c
Confidence 4455567999999999999988999999999999999999999999743221 111222222222222 2
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 238 INPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred cCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 2345899999999999999999999986
No 114
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=6.2e-36 Score=336.96 Aligned_cols=246 Identities=15% Similarity=0.211 Sum_probs=189.0
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .+.+.+|+++++++ +||||+++++++......+.
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence 46788999999999999999965 5799999999865432 24578999999999 99999999999887554322
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC-----ceEecccccc
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE-----AHVSDFGIAK 957 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~DfGla~ 957 (1075)
+ ++... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 83 v-~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~ 158 (330)
T 2izr_A 83 V-LELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158 (330)
T ss_dssp E-EECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred E-EEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence 2 22211 135789999999999999999999999 9999999999999998887 9999999998
Q ss_pred ccCCCCCc-------eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhcc
Q 042958 958 FLKPDSSN-------WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEML 1030 (1075)
Q Consensus 958 ~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1030 (1075)
.+...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||........... ...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~-----~~~i~ 233 (330)
T 2izr_A 159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKER-----YQKIG 233 (330)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHH-----HHHHH
T ss_pred eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHH-----HHHHH
Confidence 76544321 2456799999999999999999999999999999999999999975432221111 11111
Q ss_pred CCCCCCCCcC-cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1031 DPRLPTPSCI-VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1031 ~~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+.+... ....+ ++.+++..||+.||.+||++++|.+.|+
T Consensus 234 ~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~ 277 (330)
T 2izr_A 234 DTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFT 277 (330)
T ss_dssp HHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred hhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 0000000000 00122 6999999999999999999999999874
No 115
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.1e-34 Score=340.28 Aligned_cols=238 Identities=27% Similarity=0.418 Sum_probs=187.9
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|... |+.||||+++... ..+.|.+|++++++++||||+++++++......+.++
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv 265 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 265 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence 467888899999999999999886 8899999997542 2468999999999999999999999987765433333
Q ss_pred ecCccc-----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 894 LSNNAA-----------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 894 ~~~~~~-----------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++.... ...+++..++.++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~ 342 (450)
T 1k9a_A 266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 342 (450)
T ss_dssp EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence 332211 22378999999999999999999999 9999999999999999999999999999864322
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+.. ..... ..+.+.+
T Consensus 343 ---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~-----~~i~~--~~~~~~p---- 408 (450)
T 1k9a_A 343 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV-----PRVEK--GYKMDAP---- 408 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHH-----HHHHT--TCCCCCC----
T ss_pred ---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH-----HHHHc--CCCCCCC----
Confidence 223367889999999999999999999999999999998 99999754332111 11111 1122222
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..++..+.+++.+||+.||++|||+.|+++.|+
T Consensus 409 ~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~ 441 (450)
T 1k9a_A 409 DGCPPAVYDVMKNCWHLDAATRPTFLQLREQLE 441 (450)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 233456999999999999999999999998875
No 116
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=3.3e-35 Score=323.01 Aligned_cols=245 Identities=23% Similarity=0.392 Sum_probs=180.2
Q ss_pred HhcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
..++|++.+.||+|+||.||+|... .+..||+|++... ......+.+.+|+.++++++||||+++++++.+...
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 90 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV 90 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSC
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCcc
Confidence 3467888999999999999999664 2457999998754 234456789999999999999999999999865443
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.+.+.... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccC
Confidence 3333222211 133589999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCC
Q 042958 961 PDSS-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTP 1037 (1075)
Q Consensus 961 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1037 (1075)
.... ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||....... ....+... ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--------~~~~i~~~~~~~~~ 239 (281)
T 1mp8_A 168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--------VIGRIENGERLPMP 239 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--------HHHHHHTTCCCCCC
T ss_pred cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--------HHHHHHcCCCCCCC
Confidence 4322 2233456789999999998899999999999999999996 999997543211 11111111 11111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 240 ----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 272 (281)
T 1mp8_A 240 ----PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 272 (281)
T ss_dssp ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 223446999999999999999999999999874
No 117
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-35 Score=333.35 Aligned_cols=247 Identities=20% Similarity=0.367 Sum_probs=191.8
Q ss_pred HHHhcCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEee
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCS 884 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 884 (1075)
....++|++.+.||+|+||.||+|+.. +++.||||+++... .....+.+.+|+.++++++||||+++++++.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCA 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 344678999999999999999999764 35889999997543 3344678999999999999999999999997
Q ss_pred ccccchhheecCcc---------------------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 042958 885 HVRHSLAMILSNNA---------------------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIV 931 (1075)
Q Consensus 885 ~~~~~l~~~~~~~~---------------------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 931 (1075)
..+..+.+ ++... ....+++.+++.++.||++||+|||+. +|+
T Consensus 121 ~~~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~iv 196 (343)
T 1luf_A 121 VGKPMCLL-FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFV 196 (343)
T ss_dssp SSSSCEEE-EECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred cCCceEEE-EecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence 65543222 21111 015689999999999999999999999 999
Q ss_pred EecCCCCCeeeCCCCCceEeccccccccCCCC--CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCC
Q 042958 932 HRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS--SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHP 1008 (1075)
Q Consensus 932 H~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p 1008 (1075)
||||||+||+++.++.+||+|||+++...... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.|
T Consensus 197 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 276 (343)
T 1luf_A 197 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 276 (343)
T ss_dssp CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred cCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999998664332 12234567899999999998899999999999999999999 9999
Q ss_pred CCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1009 RDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
|...... .....+........ ....+..+.+++.+||+.||++|||+.||++.|+
T Consensus 277 ~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~ 331 (343)
T 1luf_A 277 YYGMAHE--------EVIYYVRDGNILAC---PENCPLELYNLMRLCWSKLPADRPSFCSIHRILQ 331 (343)
T ss_dssp TTTSCHH--------HHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCChH--------HHHHHHhCCCcCCC---CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHH
Confidence 8743221 11122222222111 1223346999999999999999999999999874
No 118
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=4.4e-35 Score=323.46 Aligned_cols=250 Identities=25% Similarity=0.456 Sum_probs=181.4
Q ss_pred HhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..++|++.+.||+|+||.||+|... ..||||+++.... .....+.+.+|++++++++||||+++++++......+.+
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEE
Confidence 3578999999999999999999764 4599999876543 344467899999999999999999999987655443333
Q ss_pred eecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC-
Q 042958 893 ILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS- 963 (1075)
Q Consensus 893 ~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~- 963 (1075)
.+... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 22211 1245689999999999999999999999 99999999999999999999999999998655322
Q ss_pred -CceeccccccCccCccccc---cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 964 -SNWTELAGTYGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 964 -~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
.......||+.|+|||.+. +..++.++||||+|+++|||++|+.||........ ...........+... .
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~~~~~~~~~~~~~~~---~ 249 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIEMVGRGSLSPDLS---K 249 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH---HHHHHHHTSCCCCTT---S
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH---HHHHhcccccCcchh---h
Confidence 2234467999999999986 56688899999999999999999999975332111 011111111111111 1
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....++..+.+++.+||+.||++|||++|+++.|+
T Consensus 250 ~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 284 (289)
T 3og7_A 250 VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284 (289)
T ss_dssp SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence 22234457999999999999999999999999875
No 119
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=7e-35 Score=333.50 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=189.3
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ......+.+|+++++.++||||+++++++.+....+.+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc---hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 467899999999999999999664 79999999987532 22346789999999999999999999999875543222
Q ss_pred ee-cCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC--CCCceEeccccccccCC
Q 042958 893 IL-SNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF--DNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 893 ~~-~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~DfGla~~~~~ 961 (1075)
+. ... .....+++.++..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||+++....
T Consensus 127 ~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~ 203 (387)
T 1kob_A 127 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP 203 (387)
T ss_dssp EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence 21 111 1123689999999999999999999999 9999999999999974 46799999999988764
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ....+.......+....
T Consensus 204 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~--------~~~~i~~~~~~~~~~~~ 274 (387)
T 1kob_A 204 DE-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE--------TLQNVKRCDWEFDEDAF 274 (387)
T ss_dssp TS-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH--------HHHHHHHCCCCCCSSTT
T ss_pred Cc-ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH--------HHHHHHhCCCCCCcccc
Confidence 32 3344579999999999999999999999999999999999999997433211 11111111111111122
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+.++.+++.+||+.||++|||++|+++
T Consensus 275 ~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 275 SSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp TTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 234456999999999999999999999986
No 120
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.9e-35 Score=332.51 Aligned_cols=243 Identities=19% Similarity=0.268 Sum_probs=190.5
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|+.+ +|+.||||++...........+.+..|..+++.+ +||+|+++++++...+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 4578999999999999999999765 5889999998653211222346788999999988 8999999999988755432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 98 -lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 -FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp -EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred -EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 2222221 135689999999999999999999999 999999999999999999999999999987554
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+.
T Consensus 174 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------~~~~~~i~~~~~~~p~--- 242 (353)
T 2i0e_A 174 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--------DELFQSIMEHNVAYPK--- 242 (353)
T ss_dssp TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCT---
T ss_pred CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--------HHHHHHHHhCCCCCCC---
Confidence 44455667899999999999999999999999999999999999999974322 1122222223332222
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCC-----HHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPT-----MPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1071 (1075)
..+.++.+++.+||++||++||+ ++|+++
T Consensus 243 -~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 243 -SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp -TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred -CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 23346899999999999999995 467654
No 121
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=7.6e-35 Score=320.81 Aligned_cols=244 Identities=21% Similarity=0.284 Sum_probs=190.2
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||+|++..... .....+.+.+|+.++++++||||+++++++......+.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC-CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 478899999999999999999654 689999999875433 233457789999999999999999999999776543222
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC---ceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE---AHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfGla~~~~ 960 (1075)
++... ....+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+|||.+....
T Consensus 84 -~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 159 (284)
T 3kk8_A 84 -FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159 (284)
T ss_dssp -ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred -EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence 22211 134588999999999999999999999 9999999999999987665 9999999998765
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||....... ....+.......+...
T Consensus 160 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--------~~~~~~~~~~~~~~~~ 230 (284)
T 3kk8_A 160 DS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR--------LYAQIKAGAYDYPSPE 230 (284)
T ss_dssp SS-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHTCCCCCTTT
T ss_pred cC-ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH--------HHHHHHhccccCCchh
Confidence 43 23345679999999999999999999999999999999999999996432211 1111111111111111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+||+.||++|||++|+++
T Consensus 231 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 231 WDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp TTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 2233456999999999999999999999986
No 122
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=324.19 Aligned_cols=252 Identities=21% Similarity=0.329 Sum_probs=184.3
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+.+|++++++++||||+++++++...+..+.+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv- 80 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE-DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV- 80 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC-C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE-
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc-cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE-
Confidence 57889999999999999999765 69999999986653 3334467788999999999999999999999876543322
Q ss_pred ecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 894 LSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 894 ~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
++.. .....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.++.......
T Consensus 81 ~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 157 (311)
T 4agu_A 81 FEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD 157 (311)
T ss_dssp EECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred EEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence 2211 1245689999999999999999999999 999999999999999999999999999988765555
Q ss_pred ceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh-------------hhhhhcc
Q 042958 965 NWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN-------------IALDEML 1030 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~-------------~~~~~~~ 1030 (1075)
......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............. .......
T Consensus 158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (311)
T 4agu_A 158 YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFS 237 (311)
T ss_dssp --------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGT
T ss_pred ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccc
Confidence 5556689999999999876 5679999999999999999999999975432211100000 0000001
Q ss_pred CCCCCCCCcC------cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1031 DPRLPTPSCI------VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1031 ~~~~~~~~~~------~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.+... ....+..+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 238 GVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp TCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 1111111110 0123456899999999999999999999986
No 123
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.4e-35 Score=331.17 Aligned_cols=247 Identities=25% Similarity=0.355 Sum_probs=184.3
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS--- 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 889 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++.............+.+|+.++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46789999999999999999965 57999999999876555556667899999999999999999999998765432
Q ss_pred hhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 890 LAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 890 l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
..++++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.+.
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 167 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIA 167 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence 122222221 235689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC---ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 961 PDSS---NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 961 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
.... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||....... ............+
T Consensus 168 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~--------~~~~~~~~~~~~~ 239 (311)
T 3ork_A 168 DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS--------VAYQHVREDPIPP 239 (311)
T ss_dssp --------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--------HHHHHHHCCCCCH
T ss_pred ccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH--------HHHHHhcCCCCCc
Confidence 4322 2234568999999999999999999999999999999999999997433211 0111111111111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.......+.++.+++.+||+.||++||++.++++
T Consensus 240 ~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 240 SARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 1111123456999999999999999998777664
No 124
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=330.81 Aligned_cols=238 Identities=20% Similarity=0.281 Sum_probs=188.8
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCch-----hHHHHHHHHHHHHhcCCcCceeeEEEEeecc
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEM-----TFQQEFLNEVKALTEIRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 886 (1075)
..++|++.+.||+|+||.||+|.. .+++.||||++........ ...+.+.+|+.++++++||||+++++++...
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 357899999999999999999965 5789999999876532211 1234677899999999999999999999876
Q ss_pred ccchhheecC-c--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccc
Q 042958 887 RHSLAMILSN-N--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAK 957 (1075)
Q Consensus 887 ~~~l~~~~~~-~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~ 957 (1075)
+..+.++... . .....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~ 178 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAA 178 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccce
Confidence 5543322211 1 1234689999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 958 FLKPDSSNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
...... ......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||..... ........
T Consensus 179 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------------~~~~~~~~ 243 (335)
T 3dls_A 179 YLERGK-LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------------TVEAAIHP 243 (335)
T ss_dssp ECCTTC-CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG--------------GTTTCCCC
T ss_pred ECCCCC-ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH--------------HHhhccCC
Confidence 776443 2344679999999999988877 7899999999999999999999963211 11112222
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhh
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQL 1072 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1072 (1075)
+.. .+.++.+++.+||++||++|||++|+++-
T Consensus 244 ~~~----~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 244 PYL----VSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp SSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred Ccc----cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 221 23358999999999999999999999873
No 125
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=7.8e-35 Score=320.53 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=187.8
Q ss_pred HhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..++|++.+.||+|+||.||+|+..++..||||++...... .+++.+|++++++++||||+++++++......+.+
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 97 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII 97 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC----HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence 35678889999999999999999998889999999754322 36789999999999999999999999775543222
Q ss_pred eecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++.. .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.++.....
T Consensus 98 -~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 173 (283)
T 3gen_A 98 -TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 173 (283)
T ss_dssp -ECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred -EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence 2211 1135689999999999999999999999 9999999999999999999999999999876533
Q ss_pred CC-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 963 SS-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 963 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. ......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||....... ......... ....+.
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~-----~~~~~~~~~--~~~~~~-- 244 (283)
T 3gen_A 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE-----TAEHIAQGL--RLYRPH-- 244 (283)
T ss_dssp HHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-----HHHHHHTTC--CCCCCT--
T ss_pred ccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH-----HHHHHhccc--CCCCCC--
Confidence 21 1223456788999999998899999999999999999998 999997433211 111111111 111111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 245 --~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~ 276 (283)
T 3gen_A 245 --LASEKVYTIMYSCWHEKADERPTFKILLSNIL 276 (283)
T ss_dssp --TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence 12345899999999999999999999999874
No 126
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=8.1e-35 Score=324.96 Aligned_cols=250 Identities=22% Similarity=0.314 Sum_probs=181.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++...........+++.+|+.++++++||||+++++++...+..+.+
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 45789999999999999999965 57999999999765444555677899999999999999999999998775543222
Q ss_pred e-ecCc-----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 893 I-LSNN-----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~-~~~~-----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
+ +... .....+++..+++++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 2 1111 1234588999999999999999999999 99999999999999999999999999998766
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
..........|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .......+.....+.. .
T Consensus 188 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~~~~~~~~~--~ 259 (310)
T 2wqm_A 188 SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN------LYSLCKKIEQCDYPPL--P 259 (310)
T ss_dssp -----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC------HHHHHHHHHTTCSCCC--C
T ss_pred CCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh------HHHHHHHhhcccCCCC--c
Confidence 5444444567899999999999999999999999999999999999998643211 0111111111121111 0
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+..+.+++.+||+.||++|||++||++.|+
T Consensus 260 ~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~ 293 (310)
T 2wqm_A 260 SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAK 293 (310)
T ss_dssp TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 1223446999999999999999999999999874
No 127
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=5.3e-35 Score=330.50 Aligned_cols=239 Identities=21% Similarity=0.250 Sum_probs=189.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|+.. +|+.||||++...........+.+.+|+++++.++||||+++++++.+....+ +
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-l 118 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY-M 118 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE-E
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE-E
Confidence 367888999999999999999765 79999999986432112223567889999999999999999999998755432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 119 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~- 194 (350)
T 1rdq_E 119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR- 194 (350)
T ss_dssp EEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-
T ss_pred EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC-
Confidence 222221 134688999999999999999999999 9999999999999999999999999999876532
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+. .
T Consensus 195 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--------~~~~~~i~~~~~~~p~----~ 260 (350)
T 1rdq_E 195 --TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--------IQIYEKIVSGKVRFPS----H 260 (350)
T ss_dssp --BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCT----T
T ss_pred --cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH--------HHHHHHHHcCCCCCCC----C
Confidence 2346799999999999999999999999999999999999999974322 1112222222332222 2
Q ss_pred HHHHHHHHHHHccCCCCCCCCC-----HHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPT-----MPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1071 (1075)
.+..+.+++.+||+.||++||+ ++||++
T Consensus 261 ~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 261 FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp CCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred CCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 2346899999999999999998 888865
No 128
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=8.2e-35 Score=340.63 Aligned_cols=241 Identities=22% Similarity=0.336 Sum_probs=191.2
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|.+.+.||+|+||.||+|... +|+.||||++...........+.+.+|+.+++.++||||+++++++......+.
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~l- 93 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFM- 93 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE-
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE-
Confidence 367888999999999999999765 799999999864321122235678999999999999999999999987654322
Q ss_pred eecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++.. .....+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 v~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~- 169 (476)
T 2y94_A 94 VMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG- 169 (476)
T ss_dssp EEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT-
T ss_pred EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc-
Confidence 22221 1245689999999999999999999999 9999999999999999999999999999876543
Q ss_pred CceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||+.... ......+.+.....+..
T Consensus 170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--------~~~~~~i~~~~~~~p~~--- 238 (476)
T 2y94_A 170 EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--------PTLFKKICDGIFYTPQY--- 238 (476)
T ss_dssp CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--------HHHHHHHHTTCCCCCTT---
T ss_pred ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--------HHHHHHHhcCCcCCCcc---
Confidence 33445689999999999988765 6899999999999999999999974322 11222333333333322
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..+.+++.+||+.||++|||++|+++
T Consensus 239 -~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 239 -LNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp -CCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -CCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 2345899999999999999999999986
No 129
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=331.49 Aligned_cols=242 Identities=21% Similarity=0.300 Sum_probs=174.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|... +++.||||++.... ..+.+.+|++++++++||||+++++++......+.
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 125 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL 125 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence 3567889999999999999999765 68899999987532 23578899999999999999999999987654322
Q ss_pred heecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC---CCCceEecccccccc
Q 042958 892 MILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF---DNEAHVSDFGIAKFL 959 (1075)
Q Consensus 892 ~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfGla~~~ 959 (1075)
+++.. .....+++.++..++.|+++||+|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 126 -v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~ 201 (349)
T 2w4o_A 126 -VLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV 201 (349)
T ss_dssp -EECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-----
T ss_pred -EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCcccccc
Confidence 22221 1234589999999999999999999999 9999999999999975 889999999999876
Q ss_pred CCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... .....+.......+..
T Consensus 202 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-------~~~~~i~~~~~~~~~~ 273 (349)
T 2w4o_A 202 EHQ-VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-------FMFRRILNCEYYFISP 273 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-------HHHHHHHTTCCCCCTT
T ss_pred Ccc-cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-------HHHHHHHhCCCccCCc
Confidence 533 22345679999999999999999999999999999999999999986432211 1122222222222111
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+..+.+++.+||+.||++|||++|+++
T Consensus 274 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 274 WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 22334456999999999999999999999986
No 130
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=6.5e-35 Score=327.21 Aligned_cols=241 Identities=22% Similarity=0.312 Sum_probs=168.7
Q ss_pred CceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeeccccchhheecCc
Q 042958 820 EHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRHSLAMILSNN 897 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~l~~~~~~~ 897 (1075)
.+.||+|+||.||+|... +|+.||||++... ....+.+|+.+++.+. ||||+++++++.+....+.+ ++..
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv-~e~~ 88 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLV-MELL 88 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE-ECCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEE-EEcc
Confidence 478999999999999664 7999999998532 2467889999999996 99999999999876544322 2221
Q ss_pred ---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC---CceEeccccccccCCCCCc
Q 042958 898 ---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN---EAHVSDFGIAKFLKPDSSN 965 (1075)
Q Consensus 898 ---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfGla~~~~~~~~~ 965 (1075)
.....+++.++..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+++........
T Consensus 89 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~ 165 (325)
T 3kn6_A 89 NGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP 165 (325)
T ss_dssp CSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----
T ss_pred CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc
Confidence 1235689999999999999999999999 999999999999998766 7999999999877665555
Q ss_pred eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHH
Q 042958 966 WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKL 1045 (1075)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1075)
.....||+.|+|||++.+..++.++||||+|+++|||++|+.||........ ..........+.......+.......+
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~s 244 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT-CTSAVEIMKKIKKGDFSFEGEAWKNVS 244 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCCHHHHHHHHTTTCCCCCSHHHHTSC
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc-cccHHHHHHHHHcCCCCCCcccccCCC
Confidence 5667889999999999999999999999999999999999999975432111 111122333444444433332333455
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1046 ISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1046 ~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.++.+++.+||+.||++|||++|+++
T Consensus 245 ~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 245 QEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp HHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred HHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 67999999999999999999999874
No 131
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3.3e-35 Score=334.43 Aligned_cols=239 Identities=22% Similarity=0.256 Sum_probs=179.7
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHH-HhcCCcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKA-LTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.+.||+|+||.||+|+.+ +++.||||++...........+.+..|..+ ++.++||||+++++++...+..+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~- 115 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY- 115 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE-
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE-
Confidence 467899999999999999999765 689999999976543333334567778777 57789999999999998765433
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++++... ....+++.+.+.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 116 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 116 FVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 2222221 134578889999999999999999999 9999999999999999999999999999875544
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+.
T Consensus 193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------~~~~~~i~~~~~~~~~---- 260 (373)
T 2r5t_A 193 NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--------AEMYDNILNKPLQLKP---- 260 (373)
T ss_dssp CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH--------HHHHHHHHHSCCCCCS----
T ss_pred CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--------HHHHHHHHhcccCCCC----
Confidence 4455667899999999999999999999999999999999999999964322 1112222222222222
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHH
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPK 1068 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~e 1068 (1075)
..+..+.+++.+||++||++||++.+
T Consensus 261 ~~~~~~~~li~~lL~~dp~~R~~~~~ 286 (373)
T 2r5t_A 261 NITNSARHLLEGLLQKDRTKRLGAKD 286 (373)
T ss_dssp SSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred CCCHHHHHHHHHHcccCHHhCCCCCC
Confidence 22345899999999999999999853
No 132
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=334.43 Aligned_cols=244 Identities=23% Similarity=0.361 Sum_probs=188.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
.++|++.+.||+|+||.||+|.+. +++.||||++... .......++.+|+.++++++||||+++++++....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~ 147 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 147 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc--cChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 467888999999999999999743 4678999998653 23344567899999999999999999999997755
Q ss_pred cchhhe-ecCc--------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC---Cce
Q 042958 888 HSLAMI-LSNN--------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN---EAH 949 (1075)
Q Consensus 888 ~~l~~~-~~~~--------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~k 949 (1075)
..+.++ +... .....+++.+++.++.||++||+|||+. +|+||||||+||+++.++ .+|
T Consensus 148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~k 224 (367)
T 3l9p_A 148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 224 (367)
T ss_dssp SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEE
Confidence 432221 1111 1124589999999999999999999999 999999999999999655 599
Q ss_pred EeccccccccCCCC--CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhh
Q 042958 950 VSDFGIAKFLKPDS--SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIAL 1026 (1075)
Q Consensus 950 l~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1026 (1075)
|+|||+++.+.... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--------~~~ 296 (367)
T 3l9p_A 225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--------EVL 296 (367)
T ss_dssp ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--------HHH
T ss_pred ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--------HHH
Confidence 99999998653221 22334567899999999999999999999999999999998 99999743321 111
Q ss_pred hhccCCC-CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1027 DEMLDPR-LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1027 ~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+.... ...+ ...+..+.+++.+||+.||++|||++||++.|+
T Consensus 297 ~~i~~~~~~~~~----~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~ 341 (367)
T 3l9p_A 297 EFVTSGGRMDPP----KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIE 341 (367)
T ss_dssp HHHHTTCCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHcCCCCCCC----ccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 1222211 1111 123346899999999999999999999999875
No 133
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=325.77 Aligned_cols=247 Identities=23% Similarity=0.367 Sum_probs=175.9
Q ss_pred HHhcCCCCCceecccCceEEEEEEECC-CC---EEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELAS-GE---IVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-g~---~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
...++|++.+.||+|+||.||+|.... ++ .||||++....... ...+++.+|++++++++||||+++++++....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 98 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS-SDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C-HHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH-HHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence 345789999999999999999996553 32 79999997643332 34678999999999999999999999987654
Q ss_pred cc-----hhheecCcc---------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC
Q 042958 888 HS-----LAMILSNNA---------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE 947 (1075)
Q Consensus 888 ~~-----l~~~~~~~~---------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~ 947 (1075)
.. ...+++... ....+++.++++++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~ 175 (323)
T 3qup_A 99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMT 175 (323)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSC
T ss_pred cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCC
Confidence 32 011221111 112589999999999999999999999 9999999999999999999
Q ss_pred ceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhh
Q 042958 948 AHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNI 1024 (1075)
Q Consensus 948 ~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 1024 (1075)
+||+|||+++....... ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.......
T Consensus 176 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~-------- 247 (323)
T 3qup_A 176 VCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE-------- 247 (323)
T ss_dssp EEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--------
T ss_pred EEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--------
Confidence 99999999987654332 1223456789999999999999999999999999999999 999997543321
Q ss_pred hhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1025 ALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1025 ~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+... ....+ ...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 248 ~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 294 (323)
T 3qup_A 248 IYNYLIGGNRLKQP----PECMEEVYDLMYQCWSADPKQRPSFTCLRMELE 294 (323)
T ss_dssp HHHHHHTTCCCCCC----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCCC----CccCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 11111111 12222 223346999999999999999999999998875
No 134
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2.6e-35 Score=345.84 Aligned_cols=242 Identities=21% Similarity=0.270 Sum_probs=181.0
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.............+.+|+++++.++||||++++++|...+..+ +
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~-l 225 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLC-F 225 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEE-E
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEE-E
Confidence 46799999999999999999965 479999999986432222233467889999999999999999999998765432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHN-DCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+++... ....+++.++..++.||+.||+|||+ . +|+||||||+||+++.++.+||+|||+|+.....
T Consensus 226 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp EECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 222221 13568899999999999999999998 7 9999999999999999999999999999876555
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.......+.
T Consensus 303 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~---- 370 (446)
T 4ejn_A 303 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--------KLFELILMEEIRFPR---- 370 (446)
T ss_dssp ----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT----
T ss_pred CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--------HHHHHHHhCCCCCCc----
Confidence 55556678999999999999999999999999999999999999999643221 111222222222222
Q ss_pred HHHHHHHHHHHHccCCCCCCCC-----CHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRP-----TMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1071 (1075)
..+.++.+++.+||+.||++|| +++|+++
T Consensus 371 ~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 371 TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 2234689999999999999999 9999986
No 135
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=328.18 Aligned_cols=245 Identities=24% Similarity=0.417 Sum_probs=183.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCE----EEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEI----VAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|... +++. ||+|.+..... ....+++.+|+.++++++||||++++++|.....
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 91 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTSTV 91 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS--CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC--HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCc
Confidence 467889999999999999999654 4553 57787754322 2235789999999999999999999999987664
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.+...... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 92 ~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred eEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 4333222211 235689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 961 PDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 961 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
..... .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||+....... ...... ....+.+
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-----~~~~~~--~~~~~~~ 241 (327)
T 3lzb_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-----SSILEK--GERLPQP 241 (327)
T ss_dssp -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-----HHHHHT--TCCCCCC
T ss_pred CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-----HHHHHc--CCCCCCC
Confidence 44322 223456789999999999999999999999999999999 9999975433211 111111 1122222
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 242 ~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 274 (327)
T 3lzb_A 242 P----ICTIDVYMIMRKCWMIDADSRPKFRELIIEFS 274 (327)
T ss_dssp T----TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred c----cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 2 23346899999999999999999999999874
No 136
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1e-34 Score=327.57 Aligned_cols=242 Identities=22% Similarity=0.333 Sum_probs=193.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|.+.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..+ +
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-l 118 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVF-V 118 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE-E
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEE-E
Confidence 467888999999999999999665 68899999987654444556778999999999999999999999998765432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 222211 135689999999999999999999999 99999999999999999999999999998876554
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
.......||+.|+|||++.+..++.++||||||+++|||++|+.||....... ....+.......+. .
T Consensus 196 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--------~~~~~~~~~~~~~~----~ 263 (335)
T 2owb_A 196 ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE--------TYLRIKKNEYSIPK----H 263 (335)
T ss_dssp CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHHTCCCCCT----T
T ss_pred ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH--------HHHHHhcCCCCCCc----c
Confidence 44556779999999999999899999999999999999999999997432111 11111111222221 2
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.+++.+||+.||++|||++|+++
T Consensus 264 ~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 264 INPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 2345889999999999999999999986
No 137
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=3.5e-35 Score=329.99 Aligned_cols=245 Identities=24% Similarity=0.370 Sum_probs=184.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCE----EEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEI----VAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|... +++. ||+|++...... ...+.+.+|+.++++++||||++++++|.....
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 89 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR--QSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSL 89 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC--SCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH--HHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcc
Confidence 357888899999999999999654 4554 888887543221 223567789999999999999999999976544
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.+.+.... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.+.
T Consensus 90 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 90 QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence 3333222211 134688899999999999999999999 99999999999999999999999999999876
Q ss_pred CCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 961 PDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 961 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
.... ......|++.|+|||++.+..++.++||||+|+++|||++ |+.||......... ...... .....+
T Consensus 167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~-----~~~~~~--~~~~~~ 239 (325)
T 3kex_A 167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVP-----DLLEKG--ERLAQP 239 (325)
T ss_dssp CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHH-----HHHHTT--CBCCCC
T ss_pred cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHH-----HHHHcC--CCCCCC
Confidence 5432 2344567889999999999999999999999999999999 99999754322111 111111 111111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.. .+..+.+++.+||+.||++|||++|+++.|+
T Consensus 240 ~~----~~~~~~~li~~~l~~dp~~Rps~~el~~~l~ 272 (325)
T 3kex_A 240 QI----CTIDVYMVMVKCWMIDENIRPTFKELANEFT 272 (325)
T ss_dssp TT----BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred Cc----CcHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11 2234889999999999999999999999874
No 138
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.1e-34 Score=333.54 Aligned_cols=242 Identities=23% Similarity=0.371 Sum_probs=184.1
Q ss_pred cCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC--cCceeeEEEEeeccccchhh
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR--HRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~l~~ 892 (1075)
.+|++.+.||+|+||.||+|...+++.||||++..... .....+.+.+|++++++++ ||||+++++++......+ +
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~-l 133 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY-M 133 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE-E
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEE-E
Confidence 56899999999999999999888899999999876433 3445678999999999996 599999999988765532 2
Q ss_pred eecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 893 ILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 893 ~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+++... ....+++.++..++.||++||+|||+. +|+||||||+||+++ ++.+||+|||+++.+.....
T Consensus 134 v~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 134 VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp EEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 222211 234678889999999999999999999 999999999999996 68999999999987754432
Q ss_pred --ceeccccccCccCcccccc-----------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC
Q 042958 965 --NWTELAGTYGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 965 --~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
.....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ......+.+
T Consensus 210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~-------~~~~~~~~~ 282 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-------ISKLHAIID 282 (390)
T ss_dssp ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-------HHHHHHHHC
T ss_pred cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH-------HHHHHHHhC
Confidence 2345679999999999865 36889999999999999999999999643211 112222333
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1032 PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1032 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+...... ....+..+.+++.+||+.||++|||++|+++
T Consensus 283 ~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 283 PNHEIEF--PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp TTSCCCC--CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccCCC--CccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 2221110 0111345899999999999999999999986
No 139
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=9e-35 Score=334.10 Aligned_cols=243 Identities=23% Similarity=0.365 Sum_probs=190.2
Q ss_pred hcCCCCCceecccCceEEEEEEEC--------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEee
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA--------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCS 884 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 884 (1075)
.++|.+.+.||+|+||.||+|... ++..||||++... ......+++.+|+++++++ +||||++++++|.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 145 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD--ATEKDLSDLISEMEMMKMIGKHKNIINLLGACT 145 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc--cCHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence 467888999999999999999652 2357999999764 2334457899999999999 9999999999997
Q ss_pred ccccchhheecCcc-------------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Q 042958 885 HVRHSLAMILSNNA-------------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKN 939 (1075)
Q Consensus 885 ~~~~~l~~~~~~~~-------------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~N 939 (1075)
..+..+.++ +... ....+++.++++++.||++||+|||+. +|+||||||+|
T Consensus 146 ~~~~~~lv~-e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~N 221 (382)
T 3tt0_A 146 QDGPLYVIV-EYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARN 221 (382)
T ss_dssp SSSSCEEEE-ECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGG
T ss_pred cCCceEEEE-EecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcce
Confidence 755432222 1111 123589999999999999999999999 99999999999
Q ss_pred eeeCCCCCceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccc
Q 042958 940 VLLDFDNEAHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMS 1016 (1075)
Q Consensus 940 ill~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~ 1016 (1075)
|+++.++.+||+|||+++....... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||......
T Consensus 222 Ill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~- 300 (382)
T 3tt0_A 222 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE- 300 (382)
T ss_dssp EEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-
T ss_pred EEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-
Confidence 9999999999999999987654332 2334467889999999999999999999999999999999 99998743321
Q ss_pred cchhhhhhhhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1017 SSSLNLNIALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1017 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.....+... ....+ ...+.++.+++.+||+.||++|||++||++.|+
T Consensus 301 -------~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 348 (382)
T 3tt0_A 301 -------ELFKLLKEGHRMDKP----SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 348 (382)
T ss_dssp -------HHHHHHHTTCCCCCC----SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCC----ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 111111111 11111 123346999999999999999999999999875
No 140
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-34 Score=341.42 Aligned_cols=188 Identities=26% Similarity=0.365 Sum_probs=142.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----H 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~ 888 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ......+++.+|++++++++|||||++++++.... .
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh-cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 36799999999999999999955 479999999987543 33444678999999999999999999999985432 1
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++++++... ....+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+...
T Consensus 131 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~ 207 (458)
T 3rp9_A 131 ELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVD 207 (458)
T ss_dssp CEEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred eEEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence 2223222221 234689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC---------------------------ceeccccccCccCcccc-ccCCCCcccchHhHHHHHHHHHhC
Q 042958 961 PDSS---------------------------NWTELAGTYGYVAPELA-YTMKVTEKCDVYSFGVLALEVIKG 1005 (1075)
Q Consensus 961 ~~~~---------------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~G~vl~elltg 1005 (1075)
.... .....+||+.|+|||++ .+..++.++||||+||++|||++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp SCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred CccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 3221 23445789999999976 566799999999999999999994
No 141
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.2e-35 Score=333.09 Aligned_cols=248 Identities=24% Similarity=0.381 Sum_probs=190.5
Q ss_pred HHHhcCCCCCceecccCceEEEEEEEC-CC-----CEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEe
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAELA-SG-----EIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFC 883 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g-----~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 883 (1075)
....++|+..+.||+|+||.||+|... ++ ..||+|++.... .....+.+.+|+++++++ +||||+++++++
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 344678999999999999999999764 23 479999987543 334467899999999999 899999999999
Q ss_pred eccccchhheecCcc-----------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCe
Q 042958 884 SHVRHSLAMILSNNA-----------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNV 940 (1075)
Q Consensus 884 ~~~~~~l~~~~~~~~-----------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Ni 940 (1075)
...+..+.+ ++... ....+++..++.++.|++.||+|||+. +|+||||||+||
T Consensus 120 ~~~~~~~lv-~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NI 195 (333)
T 2i1m_A 120 THGGPVLVI-TEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNV 195 (333)
T ss_dssp CSSSSCEEE-EECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGC
T ss_pred ecCCceEEE-EecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceE
Confidence 775543222 22111 123578999999999999999999999 999999999999
Q ss_pred eeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCcccc
Q 042958 941 LLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSS 1017 (1075)
Q Consensus 941 ll~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~ 1017 (1075)
+++.++.+||+|||+++........ .....+|+.|+|||.+.+..++.++||||||+++|||++ |..||........
T Consensus 196 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~ 275 (333)
T 2i1m_A 196 LLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK 275 (333)
T ss_dssp EEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH
T ss_pred EECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH
Confidence 9999999999999999876543322 223457889999999998899999999999999999998 9999874332111
Q ss_pred chhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1018 SSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
........... ..+. ..+..+.+++.+||+.||.+|||++||++.|+
T Consensus 276 ----~~~~~~~~~~~--~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 322 (333)
T 2i1m_A 276 ----FYKLVKDGYQM--AQPA----FAPKNIYSIMQACWALEPTHRPTFQQICSFLQ 322 (333)
T ss_dssp ----HHHHHHHTCCC--CCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ----HHHHHhcCCCC--CCCC----CCCHHHHHHHHHHhccChhhCcCHHHHHHHHH
Confidence 11111111111 1111 12346899999999999999999999999874
No 142
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1e-34 Score=340.73 Aligned_cols=243 Identities=24% Similarity=0.408 Sum_probs=186.4
Q ss_pred HhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..++|+..+.||+|+||.||+|.+.++..||||+++.... ..++|.+|++++++++||||+++++++......+.+
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~ 257 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVT 257 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEE
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEe
Confidence 3467888899999999999999998888899999975432 246899999999999999999999999764433322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
.+.... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 258 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~ 334 (452)
T 1fmk_A 258 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334 (452)
T ss_dssp CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred hhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCc
Confidence 222111 124588999999999999999999999 99999999999999999999999999998765432
Q ss_pred C-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC-CCCCCCCcC
Q 042958 964 S-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD-PRLPTPSCI 1040 (1075)
Q Consensus 964 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1040 (1075)
. ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+.. .+.+.+.
T Consensus 335 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--------~~~~i~~~~~~~~~~-- 404 (452)
T 1fmk_A 335 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--------VLDQVERGYRMPCPP-- 404 (452)
T ss_dssp --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--------HHHHHHTTCCCCCCT--
T ss_pred eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--------HHHHHHcCCCCCCCC--
Confidence 2 2233456789999999998999999999999999999999 999987433211 1111111 1222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.++..+.+++.+||+.||++|||+++|++.|+
T Consensus 405 --~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~ 436 (452)
T 1fmk_A 405 --ECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 436 (452)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 33446999999999999999999999999875
No 143
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.4e-35 Score=324.80 Aligned_cols=249 Identities=23% Similarity=0.344 Sum_probs=183.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|... +++.||||++......+....+.+.+|+.++++++||||+++++++...+..+.
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 3578999999999999999999764 789999999976544445556789999999999999999999999977554332
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+ ++... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 112 v-~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 112 D-MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp E-EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred E-EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 2 22211 234689999999999999999999999 9999999999999999999999999999876543
Q ss_pred C-CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 963 S-SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 963 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
. .......|++.|+|||.+.+..++.++||||||+++|||++|+.||...... ..........+.+....
T Consensus 188 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---------~~~~~~~~~~~~~~~~~ 258 (309)
T 2h34_A 188 KLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS---------VMGAHINQAIPRPSTVR 258 (309)
T ss_dssp ---------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH---------HHHHHHHSCCCCGGGTS
T ss_pred ccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH---------HHHHHhccCCCCccccC
Confidence 2 2233457899999999999999999999999999999999999999743221 11111111111111112
Q ss_pred HHHHHHHHHHHHHccCCCCCCCC-CHHHHHhhhc
Q 042958 1042 QDKLISIVEVAISCLDENPESRP-TMPKVSQLLK 1074 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++|| +++|+++.|+
T Consensus 259 ~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~ 292 (309)
T 2h34_A 259 PGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAH 292 (309)
T ss_dssp TTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHH
Confidence 23344699999999999999999 9999998874
No 144
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=9e-35 Score=322.65 Aligned_cols=249 Identities=16% Similarity=0.201 Sum_probs=189.3
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .+.+.+|+.+++.+ +|+|++++++++......+.
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 46789999999999999999965 5799999999865422 24577899999999 89999999999876554332
Q ss_pred heecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC-----ceEeccccccc
Q 042958 892 MILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE-----AHVSDFGIAKF 958 (1075)
Q Consensus 892 ~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~DfGla~~ 958 (1075)
++..... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++.
T Consensus 84 v~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~ 160 (298)
T 1csn_A 84 VIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160 (298)
T ss_dssp EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred EEEecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence 2211111 134589999999999999999999999 9999999999999988776 99999999987
Q ss_pred cCCCCC-------ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC
Q 042958 959 LKPDSS-------NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 959 ~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.............. .......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~-~~~~~~~ 239 (298)
T 1csn_A 161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYER-IGEKKQS 239 (298)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHH-HHHHHHH
T ss_pred cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHH-HHhhccC
Confidence 765432 12445799999999999999999999999999999999999999976433221111100 0000000
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1032 PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1032 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
... .......+..+.+++.+||+.||++|||++||++.|+
T Consensus 240 ~~~---~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~ 279 (298)
T 1csn_A 240 TPL---RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 279 (298)
T ss_dssp SCH---HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred ccH---HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence 000 0001122346999999999999999999999999874
No 145
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=7.7e-35 Score=319.80 Aligned_cols=241 Identities=28% Similarity=0.432 Sum_probs=185.1
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
+.++|++.+.||+|+||.||+|... +++.||||++.............+.+|+.++++++||||+++++++.+....+.
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 3567889999999999999999654 678999999854322222235678999999999999999999999987654322
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+++... ....+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 87 -v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 87 -ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp -EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred -EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 222211 235588999999999999999999999 9999999999999999999999999998654432
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
......|++.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 163 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~---- 228 (279)
T 3fdn_A 163 --RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ--------ETYKRISRVEFTFPD---- 228 (279)
T ss_dssp -------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHHTCCCCCT----
T ss_pred --cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH--------HHHHHHHhCCCCCCC----
Confidence 234467899999999999999999999999999999999999999743221 111111112222221
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+..+.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 229 FVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp TSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred cCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 12345899999999999999999999986
No 146
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.1e-35 Score=331.64 Aligned_cols=243 Identities=25% Similarity=0.369 Sum_probs=177.1
Q ss_pred CCCCCceecccCceEEEEEEEC--CC--CEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 816 DFDDEHCIGKGGQGSVYKAELA--SG--EIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 816 ~~~~~~~lG~G~~g~Vy~~~~~--~g--~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
.|+..+.||+|+||.||+|... ++ ..||||.+... ......++|.+|+.++++++||||++++++|...+....
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~ 167 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 167 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC--SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence 4566789999999999999653 22 36899998753 233446789999999999999999999999865544333
Q ss_pred heecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 892 MILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 892 ~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.+..
T Consensus 168 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 168 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccc
Confidence 3333221 234578999999999999999999999 999999999999999999999999999987644
Q ss_pred CCC----ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 962 DSS----NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 962 ~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
... ......+|+.|+|||++.+..++.++||||||+++|||++ |..||.......... .... ......
T Consensus 245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~-----~~~~--~~~~~~ 317 (373)
T 3c1x_A 245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-----YLLQ--GRRLLQ 317 (373)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH-----HHHT--TCCCCC
T ss_pred cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH-----HHHc--CCCCCC
Confidence 321 1233457789999999999999999999999999999999 677776433221111 1111 111222
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 318 p~----~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~ 351 (373)
T 3c1x_A 318 PE----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 351 (373)
T ss_dssp CT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 21 22346999999999999999999999999874
No 147
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=6.7e-36 Score=343.66 Aligned_cols=252 Identities=18% Similarity=0.243 Sum_probs=190.8
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 886 (1075)
.++....++|++.+.||+|+||.||+|+.+ +++.||+|++...........+.+.+|+.+++.++|||||+++++|.+.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 344455789999999999999999999765 6899999998642111111123578999999999999999999999876
Q ss_pred ccchhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 887 RHSLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 887 ~~~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
...+ ++++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+.
T Consensus 142 ~~~~-lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~ 217 (410)
T 3v8s_A 142 RYLY-MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMK 217 (410)
T ss_dssp SEEE-EEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred CEEE-EEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence 5432 2222221 134588999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC-ceeccccccCccCccccccCC----CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCC
Q 042958 959 LKPDSS-NWTELAGTYGYVAPELAYTMK----VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPR 1033 (1075)
Q Consensus 959 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
+..... .....+||+.|+|||++.+.. ++.++||||+||++|||++|+.||........ ............
T Consensus 218 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~----~~~i~~~~~~~~ 293 (410)
T 3v8s_A 218 MNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT----YSKIMNHKNSLT 293 (410)
T ss_dssp CCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHTHHHHCC
T ss_pred eccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH----HHHHHhcccccc
Confidence 664432 234578999999999998765 78899999999999999999999974332111 011111111112
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHh
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPES--RPTMPKVSQ 1071 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1071 (1075)
++... ..+.++.+++.+|++.+|++ ||+++||++
T Consensus 294 ~p~~~----~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 294 FPDDN----DISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp CCTTC----CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred CCCcc----cccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 22211 22345899999999999998 999999986
No 148
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=326.47 Aligned_cols=254 Identities=24% Similarity=0.368 Sum_probs=183.8
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCC--chhHHHHHHHHHHHHhcCC---cCceeeEEEEeecc
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPG--EMTFQQEFLNEVKALTEIR---HRNIVKFYGFCSHV 886 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~--~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 886 (1075)
..++|++.+.||+|+||.||+|.. .+|+.||||++...... .......+.+|++++++++ ||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999965 57999999998643211 1111245667777777664 99999999998765
Q ss_pred cc----chhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 887 RH----SLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 887 ~~----~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
.. .+.++++... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~D 163 (308)
T 3g33_A 87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLAD 163 (308)
T ss_dssp CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECS
T ss_pred CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEee
Confidence 42 1222222211 122389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh-----
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD----- 1027 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~----- 1027 (1075)
||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.............. ...
T Consensus 164 fg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~-~~~~~~~~ 241 (308)
T 3g33_A 164 FGLARIYSYQ-MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFD-LIGLPPED 241 (308)
T ss_dssp CSCTTTSTTC-CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHH-HHCCCCTT
T ss_pred CccccccCCC-cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-HhCCCChh
Confidence 9999876543 233456889999999999999999999999999999999999999974332211000000 000
Q ss_pred ----------hccCCCCCCC-CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 ----------EMLDPRLPTP-SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ----------~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+ .....+.+..+.+++.+|++.||++|||++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 242 DWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp TSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0000000000 0001123456899999999999999999999986
No 149
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=9.8e-35 Score=331.61 Aligned_cols=236 Identities=23% Similarity=0.282 Sum_probs=180.9
Q ss_pred CceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhheecCcc
Q 042958 820 EHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMILSNNA 898 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~~~~~~ 898 (1075)
.+.||+|+||.||+|.. .+|+.||+|++... .....+++.+|++++++++||||+++++++...+..+.+ ++...
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv-~E~~~ 169 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTR---GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLV-MEYVD 169 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE-EECCT
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEccc---ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE-EeCCC
Confidence 56899999999999965 57999999998753 223457899999999999999999999999876543222 22211
Q ss_pred ----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee--CCCCCceEeccccccccCCCCCce
Q 042958 899 ----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL--DFDNEAHVSDFGIAKFLKPDSSNW 966 (1075)
Q Consensus 899 ----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill--~~~~~~kl~DfGla~~~~~~~~~~ 966 (1075)
....+++.++..++.||++||+|||+. +|+||||||+||++ +.++.+||+|||+++.+.... ..
T Consensus 170 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-~~ 245 (373)
T 2x4f_A 170 GGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-KL 245 (373)
T ss_dssp TCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-BC
T ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-cc
Confidence 123588999999999999999999999 99999999999999 667899999999998876443 33
Q ss_pred eccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHH
Q 042958 967 TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLI 1046 (1075)
Q Consensus 967 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1075)
....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+.......+.......+.
T Consensus 246 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~ 317 (373)
T 2x4f_A 246 KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA--------ETLNNILACRWDLEDEEFQDISE 317 (373)
T ss_dssp CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHHTCCCSCSGGGTTSCH
T ss_pred ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhccCCCChhhhccCCH
Confidence 4457999999999999889999999999999999999999999743321 11222222222222112223445
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1047 SIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1047 ~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
++.+++.+|++.||++|||++|+++
T Consensus 318 ~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 318 EAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhc
Confidence 7999999999999999999999986
No 150
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=321.27 Aligned_cols=242 Identities=26% Similarity=0.454 Sum_probs=179.1
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|+.. ++.||||++... ...+.+.+|++++++++||||+++++++.+. ..+.+.
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~lv~e 79 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACLNP-VCLVME 79 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCTTT-TEEEEE
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC-cEEEEE
Confidence 356888899999999999999876 889999998632 2357899999999999999999999988743 222221
Q ss_pred ecC----------ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC-ceEeccccccccCCC
Q 042958 894 LSN----------NAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE-AHVSDFGIAKFLKPD 962 (1075)
Q Consensus 894 ~~~----------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-~kl~DfGla~~~~~~ 962 (1075)
+.. ......+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||++......
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~ 159 (307)
T 2eva_A 80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH 159 (307)
T ss_dssp CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence 111 111234788999999999999999999932229999999999999998887 799999999865432
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||+....... . ..........+. ...
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~---~~~~~~~~~~~~---~~~ 227 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF---R---IMWAVHNGTRPP---LIK 227 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH---H---HHHHHHTTCCCC---CBT
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH---H---HHHHHhcCCCCC---ccc
Confidence 2335689999999999999999999999999999999999999974332110 0 011111111111 112
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 228 ~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 259 (307)
T 2eva_A 228 NLPKPIESLMTRCWSKDPSQRPSMEEIVKIMT 259 (307)
T ss_dssp TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 23446899999999999999999999999874
No 151
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1e-34 Score=324.91 Aligned_cols=245 Identities=24% Similarity=0.391 Sum_probs=190.1
Q ss_pred HhcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 886 (1075)
..++|.+.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++++++||||+++++++...
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 98 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC
Confidence 356788899999999999999965 345889999997542 344467899999999999999999999998765
Q ss_pred ccchhheecCcc---------------------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEe
Q 042958 887 RHSLAMILSNNA---------------------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHR 933 (1075)
Q Consensus 887 ~~~l~~~~~~~~---------------------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~ 933 (1075)
...+.+ ++... ....+++.++++++.|+++||+|||+. +|+||
T Consensus 99 ~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~ 174 (314)
T 2ivs_A 99 GPLLLI-VEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHR 174 (314)
T ss_dssp SSCEEE-EECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred CceEEE-EeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence 543222 21111 112378899999999999999999999 99999
Q ss_pred cCCCCCeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCC
Q 042958 934 DISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRD 1010 (1075)
Q Consensus 934 Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~ 1010 (1075)
||||+||+++.++.+||+|||+++........ .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.
T Consensus 175 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 254 (314)
T 2ivs_A 175 DLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 254 (314)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876544332 223456788999999998889999999999999999999 999997
Q ss_pred ccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1011 FISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....... ........ ....+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 255 ~~~~~~~-----~~~~~~~~--~~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~ 307 (314)
T 2ivs_A 255 GIPPERL-----FNLLKTGH--RMERP----DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLE 307 (314)
T ss_dssp TCCGGGH-----HHHHHTTC--CCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCHHHH-----HHHhhcCC--cCCCC----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 5432111 11111111 11111 223446999999999999999999999999874
No 152
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-34 Score=323.65 Aligned_cols=257 Identities=25% Similarity=0.366 Sum_probs=184.7
Q ss_pred HHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC--CcCceeeEEEEeeccc
Q 042958 810 IIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI--RHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 810 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~~ 887 (1075)
.....++|++.+.||+|+||.||+|+.. |+.||||++... . ...+..|.+++... +||||+++++++....
T Consensus 32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~ 104 (337)
T 3mdy_A 32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT----E--EASWFRETEIYQTVLMRHENILGFIAADIKGT 104 (337)
T ss_dssp HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG----G--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC
T ss_pred ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc----c--cchhhhHHHHHHHHhhcCCCeeeEEEEEccCC
Confidence 3344578999999999999999999876 999999998532 1 24445566665554 9999999999987653
Q ss_pred c---chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEecCCCCCeeeCCCCCceEe
Q 042958 888 H---SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDC-----FPPIVHRDISSKNVLLDFDNEAHVS 951 (1075)
Q Consensus 888 ~---~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~ 951 (1075)
. .+.++++... ....+++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+
T Consensus 105 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~ 184 (337)
T 3mdy_A 105 GSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184 (337)
T ss_dssp GGGCEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred CCCCceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence 2 2223332221 1345889999999999999999999762 2489999999999999999999999
Q ss_pred ccccccccCCCCCc----eeccccccCccCccccccCCCCcc------cchHhHHHHHHHHHhC----------CCCCCc
Q 042958 952 DFGIAKFLKPDSSN----WTELAGTYGYVAPELAYTMKVTEK------CDVYSFGVLALEVIKG----------KHPRDF 1011 (1075)
Q Consensus 952 DfGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~s~G~vl~elltg----------~~p~~~ 1011 (1075)
|||+++.+...... .....||+.|+|||++.+...+.+ +||||||+++|||++| +.||..
T Consensus 185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~ 264 (337)
T 3mdy_A 185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD 264 (337)
T ss_dssp CCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhh
Confidence 99999876544322 124579999999999987766655 9999999999999999 555543
Q ss_pred cCccccchhhhhhhh-hhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1012 ISSMSSSSLNLNIAL-DEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1012 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
............... .....+..+. ......++.++.+++.+||+.||++|||++||++.|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 327 (337)
T 3mdy_A 265 LVPSDPSYEDMREIVCIKKLRPSFPN-RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLA 327 (337)
T ss_dssp TSCSSCCHHHHHHHHTTSCCCCCCCG-GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred hcCCCCchhhhHHHHhhhccCccccc-cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHH
Confidence 222111111111100 1111111111 1112366778999999999999999999999999875
No 153
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.5e-34 Score=320.58 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=189.4
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .+++.+|+.+++.++|++++..++++........+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 46899999999999999999975 6799999999865432 24688999999999998887777776554444333
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC---CCCCceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD---FDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfGla~~~~ 960 (1075)
+++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++ .++.+||+|||+++...
T Consensus 83 v~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 159 (296)
T 3uzp_A 83 VMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred EEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence 333221 234689999999999999999999999 999999999999994 78899999999998766
Q ss_pred CCCCc-------eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCC
Q 042958 961 PDSSN-------WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPR 1033 (1075)
Q Consensus 961 ~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
..... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||......................+.
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 239 (296)
T 3uzp_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI 239 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH
T ss_pred ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch
Confidence 54321 24467999999999999999999999999999999999999999854332211111110001110000
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.......+..+.+++.+||+.||++|||++||++.|+
T Consensus 240 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 276 (296)
T 3uzp_A 240 ----EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 276 (296)
T ss_dssp ----HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHH
T ss_pred ----HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHH
Confidence 0000122346999999999999999999999999874
No 154
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.2e-35 Score=344.21 Aligned_cols=254 Identities=19% Similarity=0.222 Sum_probs=191.6
Q ss_pred HHHHHHHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeec
Q 042958 807 YEEIIRATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSH 885 (1075)
Q Consensus 807 ~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 885 (1075)
+.++....++|++.++||+|+||+||+|+.+ +++.||||++...........+.+.+|+.+++.++||||++++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 3455556789999999999999999999765 588999999864211111112348899999999999999999999987
Q ss_pred cccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccc
Q 042958 886 VRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGI 955 (1075)
Q Consensus 886 ~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGl 955 (1075)
.+..+. +++... ....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 146 ~~~~~l-V~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGl 221 (437)
T 4aw2_A 146 DNNLYL-VMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGS 221 (437)
T ss_dssp SSEEEE-EECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CCEEEE-EEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhh
Confidence 655332 222211 135689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCc-eeccccccCccCccccc-----cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhc
Q 042958 956 AKFLKPDSSN-WTELAGTYGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEM 1029 (1075)
Q Consensus 956 a~~~~~~~~~-~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1075)
|+........ ....+||+.|+|||++. ...++.++||||+||++|||++|+.||......+.. .......
T Consensus 222 a~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~----~~i~~~~ 297 (437)
T 4aw2_A 222 CLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY----GKIMNHK 297 (437)
T ss_dssp CEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHTHH
T ss_pred hhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHH----Hhhhhcc
Confidence 9876554332 33468999999999987 456899999999999999999999999743321111 1111100
Q ss_pred cCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCC--CCCHHHHHh
Q 042958 1030 LDPRLPTPSCIVQDKLISIVEVAISCLDENPES--RPTMPKVSQ 1071 (1075)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1071 (1075)
....++.. ....+.++.+++.+|+..+|++ ||+++|+++
T Consensus 298 ~~~~~p~~---~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 298 ERFQFPTQ---VTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHCCCCSS---CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred ccccCCcc---cccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 01112211 1123346899999999988888 999999975
No 155
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=9.3e-35 Score=322.19 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=186.6
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|.. .+++.||||++..... .+++.+|+++++.++|++++..++++........
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 457899999999999999999965 5799999998754322 2357889999999999888888777755444433
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEecccccccc
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla~~~ 959 (1075)
++++... ....+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 82 lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~ 158 (296)
T 4hgt_A 82 MVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 158 (296)
T ss_dssp EEEECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred EEEEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceec
Confidence 3333221 135689999999999999999999999 99999999999999 78899999999999876
Q ss_pred CCCCC-------ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCC
Q 042958 960 KPDSS-------NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDP 1032 (1075)
Q Consensus 960 ~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1075)
..... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||......................+
T Consensus 159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T 4hgt_A 159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 238 (296)
T ss_dssp BCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred cCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccch
Confidence 65432 12346789999999999999999999999999999999999999975443322111111111111000
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1033 RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1033 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. .......+..+.+++.+||+.||++|||++||++.|+
T Consensus 239 ~----~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (296)
T 4hgt_A 239 I----EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 276 (296)
T ss_dssp H----HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHH
T ss_pred h----hhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 0 0000112346999999999999999999999999874
No 156
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.3e-35 Score=327.62 Aligned_cols=251 Identities=16% Similarity=0.223 Sum_probs=178.4
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||.||+|... +++.||||++...... .....+.+|++++++++||||+++++++...+..+. +
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l-v 78 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTL-V 78 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEE-E
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEE-E
Confidence 57888999999999999999765 7999999998654221 112245679999999999999999999977654332 2
Q ss_pred ecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 894 LSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 894 ~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 79 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 155 (324)
T 3mtl_A 79 FEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK 155 (324)
T ss_dssp EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred ecccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCcc
Confidence 22211 134588999999999999999999999 999999999999999999999999999987665545
Q ss_pred ceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh----------------hhhhhh
Q 042958 965 NWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN----------------LNIALD 1027 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~----------------~~~~~~ 1027 (1075)
......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||............ ......
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (324)
T 3mtl_A 156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFK 235 (324)
T ss_dssp -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHH
T ss_pred ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhc
Confidence 5556688999999999876 56899999999999999999999999753321100000 000000
Q ss_pred hccCCCCCCCC--cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EMLDPRLPTPS--CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+...... ......+.++.+++.+|++.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 236 TYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 00000000000 001122356899999999999999999999986
No 157
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.6e-34 Score=333.22 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=187.4
Q ss_pred hcCCCCCceeccc--CceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 814 TNDFDDEHCIGKG--GQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 814 ~~~~~~~~~lG~G--~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
.++|++.+.||+| +||.||+|+.. +|+.||||++..... .....+.+.+|+++++.++|||||++++++...+..+
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC-SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 4678999999999 99999999765 799999999976432 2345678889999999999999999999998765433
Q ss_pred hhe-ecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 891 AMI-LSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 891 ~~~-~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++ +... .....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 222 1111 1125589999999999999999999999 99999999999999999999999999987543
Q ss_pred CCC-------CceeccccccCccCcccccc--CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC
Q 042958 961 PDS-------SNWTELAGTYGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 961 ~~~-------~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.....................+
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 259 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLD 259 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccc
Confidence 221 11223478999999999987 678999999999999999999999997543322111100000000000
Q ss_pred CC---------------------------CC-------CCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1032 PR---------------------------LP-------TPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1032 ~~---------------------------~~-------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. .+ .........+..+.+++.+||+.||++|||++|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 00 00 000012233456999999999999999999999985
No 158
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.4e-34 Score=324.49 Aligned_cols=245 Identities=20% Similarity=0.256 Sum_probs=190.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCch---hHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEM---TFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++........ ...+++.+|+.++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 456889999999999999999665 699999999876432221 1357899999999999999999999999876543
Q ss_pred hhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC----CceEeccccc
Q 042958 890 LAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN----EAHVSDFGIA 956 (1075)
Q Consensus 890 l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfGla 956 (1075)
+.+ ++.. .....+++..+..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLI-LELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEE-ECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEE-EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 222 2221 1234578999999999999999999999 999999999999999888 7999999999
Q ss_pred cccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 957 KFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
+...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......
T Consensus 167 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~i~~~~~~~ 237 (321)
T 2a2a_A 167 HEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--------ETLANITSVSYDF 237 (321)
T ss_dssp EECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--------HHHHHHHTTCCCC
T ss_pred eecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhccccc
Confidence 8766432 334567999999999999999999999999999999999999999643221 1112222222211
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+.......+..+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 238 DEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred ChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11111223456899999999999999999999986
No 159
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.6e-34 Score=315.99 Aligned_cols=246 Identities=23% Similarity=0.342 Sum_probs=188.0
Q ss_pred HhcCCCCCceecccCceEEEEEEECC----CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELAS----GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
..++|++.+.||+|+||.||+|.... +..||||++.... .....+.+.+|+.++++++||||+++++++.+...
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 87 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPT 87 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSC
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCC
Confidence 35678889999999999999996542 3469999987542 33446789999999999999999999999876554
Q ss_pred chhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.+..... .....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.++...
T Consensus 88 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 333322221 1134589999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 961 PDSS-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 961 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
.... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||........ ....... ...+.+.
T Consensus 165 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~-----~~~~~~~--~~~~~~~ 237 (281)
T 3cc6_A 165 DEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV-----IGVLEKG--DRLPKPD 237 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH-----HHHHHHT--CCCCCCT
T ss_pred cccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH-----HHHHhcC--CCCCCCC
Confidence 4332 2233457889999999998899999999999999999998 9999964332211 1111111 1122221
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 238 ----~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 269 (281)
T 3cc6_A 238 ----LCPPVLYTLMTRCWDYDPSDRPRFTELVCSLS 269 (281)
T ss_dssp ----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHccCCchhCcCHHHHHHHHH
Confidence 22345999999999999999999999999875
No 160
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=9.6e-35 Score=324.89 Aligned_cols=246 Identities=23% Similarity=0.405 Sum_probs=191.1
Q ss_pred HhcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeec
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSH 885 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 885 (1075)
..++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+++++++ +||||+++++++..
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 98 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGACTI 98 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch--hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec
Confidence 346788899999999999999974 356899999997542 333467899999999999 99999999999977
Q ss_pred cccchhheecCcc---------------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCC
Q 042958 886 VRHSLAMILSNNA---------------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSK 938 (1075)
Q Consensus 886 ~~~~l~~~~~~~~---------------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 938 (1075)
.+..+.+ ++... ....+++.++++++.|+++||+|||+. +|+||||||+
T Consensus 99 ~~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~ 174 (313)
T 1t46_A 99 GGPTLVI-TEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAAR 174 (313)
T ss_dssp SSSCEEE-EECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGG
T ss_pred CCCcEEE-EecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccc
Confidence 5543222 11110 112489999999999999999999999 9999999999
Q ss_pred CeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCcc
Q 042958 939 NVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSM 1015 (1075)
Q Consensus 939 Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~ 1015 (1075)
||+++.++.+||+|||+++........ .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||......
T Consensus 175 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~ 254 (313)
T 1t46_A 175 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD 254 (313)
T ss_dssp GEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS
T ss_pred eEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch
Confidence 999999999999999999877654332 223457889999999999999999999999999999999 99998754321
Q ss_pred ccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1016 SSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.. ........... ..+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 255 ~~----~~~~~~~~~~~--~~~----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 303 (313)
T 1t46_A 255 SK----FYKMIKEGFRM--LSP----EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 303 (313)
T ss_dssp HH----HHHHHHHTCCC--CCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred hH----HHHHhccCCCC--CCc----ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 11 11111111111 111 123346999999999999999999999999875
No 161
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.6e-34 Score=317.34 Aligned_cols=243 Identities=21% Similarity=0.379 Sum_probs=190.4
Q ss_pred HhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..++|++.+.||+|+||.||+|...+++.||||++..... ..+.+.+|++++++++||||+++++++......+.+
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~ 86 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIIT 86 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEE
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc----cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEE
Confidence 3467888999999999999999988888999999875432 246889999999999999999999998765433332
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
...... ....+++.++.+++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 163 (279)
T 1qpc_A 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163 (279)
T ss_dssp ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence 222111 122689999999999999999999999 99999999999999999999999999998775433
Q ss_pred Cc-eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCCCcC
Q 042958 964 SN-WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTPSCI 1040 (1075)
Q Consensus 964 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1040 (1075)
.. .....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||....... ....+... ....+
T Consensus 164 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~--- 232 (279)
T 1qpc_A 164 YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--------VIQNLERGYRMVRP--- 232 (279)
T ss_dssp EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--------HHHHHHTTCCCCCC---
T ss_pred cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--------HHHHHhcccCCCCc---
Confidence 21 223456789999999988889999999999999999999 999987432211 11111111 11111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 233 -~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 265 (279)
T 1qpc_A 233 -DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLE 265 (279)
T ss_dssp -TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -ccccHHHHHHHHHHhccChhhCCCHHHHHHHHH
Confidence 123346999999999999999999999999875
No 162
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=7.2e-35 Score=338.49 Aligned_cols=249 Identities=21% Similarity=0.268 Sum_probs=180.9
Q ss_pred HHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCC-----chhHHHHHHHHHHHHhcCCcCceeeEEEEeec
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPG-----EMTFQQEFLNEVKALTEIRHRNIVKFYGFCSH 885 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 885 (1075)
...++|.+.+.||+|+||.||+|.. .+++.||||++...... .......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 3467899999999999999999955 46899999998653211 11222358899999999999999999999876
Q ss_pred cccchhheecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC---CceEecccc
Q 042958 886 VRHSLAMILSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN---EAHVSDFGI 955 (1075)
Q Consensus 886 ~~~~l~~~~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfGl 955 (1075)
....+.+.+... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~ 288 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGH 288 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSST
T ss_pred CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeeccc
Confidence 554433332211 2245689999999999999999999999 999999999999997544 599999999
Q ss_pred ccccCCCCCceeccccccCccCcccccc---CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCC
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDP 1032 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1075)
++..... .......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||........ ....+...
T Consensus 289 a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~-------~~~~i~~~ 360 (419)
T 3i6u_A 289 SKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-------LKDQITSG 360 (419)
T ss_dssp TTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC-------HHHHHHTT
T ss_pred ceecCCC-ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH-------HHHHHhcC
Confidence 9876543 33445689999999999863 5678899999999999999999999974332111 11111122
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1033 RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1033 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
............+..+.+++.+||+.||++|||++|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 361 KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 222111111223457999999999999999999999986
No 163
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=7.8e-35 Score=328.24 Aligned_cols=243 Identities=20% Similarity=0.258 Sum_probs=187.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|..+ +|+.||||++..... ...+|++++.++ +||||+++++++.+....+
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~ 92 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVY 92 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence 3567999999999999999999664 789999999975432 234678888887 7999999999998765432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC-C---CceEecccccc
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD-N---EAHVSDFGIAK 957 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-~---~~kl~DfGla~ 957 (1075)
++++... ....+++.++..++.||+.||+|||+. +|+||||||+||++..+ + .+||+|||+++
T Consensus 93 -lv~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~ 168 (342)
T 2qr7_A 93 -VVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAK 168 (342)
T ss_dssp -EEECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred -EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence 2222211 234589999999999999999999999 99999999999998543 3 49999999999
Q ss_pred ccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 958 FLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
............+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .......+.......+
T Consensus 169 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-----~~~~~~~i~~~~~~~~ 243 (342)
T 2qr7_A 169 QLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT-----PEEILARIGSGKFSLS 243 (342)
T ss_dssp ECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC-----HHHHHHHHHHCCCCCC
T ss_pred cCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC-----HHHHHHHHccCCcccC
Confidence 87665555556789999999999988889999999999999999999999997432211 1111222222222222
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.......+..+.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 244 GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 2222334556999999999999999999999975
No 164
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.7e-34 Score=332.85 Aligned_cols=255 Identities=24% Similarity=0.328 Sum_probs=178.4
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeecccc-c
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRH-S 889 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~-~ 889 (1075)
..++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++++. ||||+++++++...+. .
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ-NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C-CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 457899999999999999999965 5799999999875432 3334567889999999997 9999999999975442 2
Q ss_pred hhheecCcc-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 890 LAMILSNNA-------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 890 l~~~~~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++++++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+|+.+...
T Consensus 86 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 162 (388)
T 3oz6_A 86 VYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNI 162 (388)
T ss_dssp EEEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESSSC
T ss_pred EEEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccccccc
Confidence 233332222 134688999999999999999999999 9999999999999999999999999999875431
Q ss_pred ---------------------CCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh
Q 042958 963 ---------------------SSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL 1020 (1075)
Q Consensus 963 ---------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~ 1020 (1075)
.......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||...........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~ 242 (388)
T 3oz6_A 163 RRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLER 242 (388)
T ss_dssp CCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 112344679999999999876 6789999999999999999999999975432111000
Q ss_pred hhh-------hhh---------------hhccCCCCCCCCcCc-------------HHHHHHHHHHHHHccCCCCCCCCC
Q 042958 1021 NLN-------IAL---------------DEMLDPRLPTPSCIV-------------QDKLISIVEVAISCLDENPESRPT 1065 (1075)
Q Consensus 1021 ~~~-------~~~---------------~~~~~~~~~~~~~~~-------------~~~~~~l~~li~~cl~~dP~~RPs 1065 (1075)
... ... ............... ...+.++.+++.+||+.||++|||
T Consensus 243 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t 322 (388)
T 3oz6_A 243 IIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRIS 322 (388)
T ss_dssp HHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCC
T ss_pred HHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCC
Confidence 000 000 000000000000000 022346899999999999999999
Q ss_pred HHHHHh
Q 042958 1066 MPKVSQ 1071 (1075)
Q Consensus 1066 ~~evl~ 1071 (1075)
++|+++
T Consensus 323 ~~e~l~ 328 (388)
T 3oz6_A 323 ANDALK 328 (388)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999986
No 165
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-34 Score=327.23 Aligned_cols=254 Identities=22% Similarity=0.270 Sum_probs=183.5
Q ss_pred HHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc--hhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE--MTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
...++|++.+.||+|+||.||+|... +|+.||||++....... ....+.+.+|++++++++||||+++++++.....
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999664 69999999987533221 1123468899999999999999999999976554
Q ss_pred chhhee-cCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMIL-SNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~-~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.+.++. ... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 87 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (346)
T 1ua2_A 87 ISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFG 163 (346)
T ss_dssp CEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred eEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence 322221 111 1234578889999999999999999999 99999999999999999999999999999876
Q ss_pred CCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC--------
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD-------- 1031 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-------- 1031 (1075)
..........||+.|+|||++.+. .++.++||||+|+++|||++|..||.......... ........
T Consensus 164 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~ 239 (346)
T 1ua2_A 164 SPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLT----RIFETLGTPTEEQWPD 239 (346)
T ss_dssp SCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHHHCCCCTTTSSS
T ss_pred CCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHcCCCChhhhhh
Confidence 555555667899999999998764 48899999999999999999999987543211100 00000000
Q ss_pred ----------CCCCCCC--cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhh
Q 042958 1032 ----------PRLPTPS--CIVQDKLISIVEVAISCLDENPESRPTMPKVSQL 1072 (1075)
Q Consensus 1032 ----------~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1072 (1075)
...+... ......+.++.+++.+||+.||++|||++|+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 240 MCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0000000 0012234579999999999999999999999863
No 166
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.2e-34 Score=326.06 Aligned_cols=252 Identities=23% Similarity=0.312 Sum_probs=186.2
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 888 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++....... .....+.+|+++++.++||||+++++++.....
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS-SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc-cchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 36789999999999999999976 579999999986654322 224578899999999999999999999876432
Q ss_pred ---chhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccc
Q 042958 889 ---SLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIA 956 (1075)
Q Consensus 889 ---~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla 956 (1075)
.+.++++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 95 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 95 CKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp --CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 1222222221 234689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCC----CceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccC
Q 042958 957 KFLKPDS----SNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 957 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
+.+.... .......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||............ ........
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i--~~~~~~~~ 249 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALI--SQLCGSIT 249 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH--HHHHCCCC
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH--HHHhCCCC
Confidence 8765322 22345678999999998876 45799999999999999999999999753321100000 00000000
Q ss_pred C---------------CCCCC-CcCcHH------HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1032 P---------------RLPTP-SCIVQD------KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1032 ~---------------~~~~~-~~~~~~------~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+ ..... .....+ ....+.+++.+|++.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 0 00000 000011 1345889999999999999999999986
No 167
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.9e-35 Score=330.41 Aligned_cols=250 Identities=23% Similarity=0.276 Sum_probs=186.3
Q ss_pred HHHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCC--CCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc
Q 042958 810 IIRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPL--PGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 810 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 886 (1075)
+....++|++.+.||+|+||.||+|.. .+++.||+|++.... .......+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 455678899999999999999999965 578999999985421 01223457899999999999999999999999775
Q ss_pred ccchhheecCccc-------------------------------------------------cCCCCHHHHHHHHHHHHH
Q 042958 887 RHSLAMILSNNAA-------------------------------------------------AKDLGWTRRMNVIKGISD 917 (1075)
Q Consensus 887 ~~~l~~~~~~~~~-------------------------------------------------~~~l~~~~~~~i~~~i~~ 917 (1075)
+..+.+ ++.... ...+++...+.++.|+++
T Consensus 101 ~~~~lv-~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 101 QYICLV-MELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SEEEEE-EECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEE-EeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 543222 221110 111246667889999999
Q ss_pred HHHHHHhCCCCCeEEecCCCCCeeeCCCC--CceEeccccccccCCCCC----ceeccccccCccCcccccc--CCCCcc
Q 042958 918 ALSYMHNDCFPPIVHRDISSKNVLLDFDN--EAHVSDFGIAKFLKPDSS----NWTELAGTYGYVAPELAYT--MKVTEK 989 (1075)
Q Consensus 918 ~L~~LH~~~~~~ivH~Dlk~~Nill~~~~--~~kl~DfGla~~~~~~~~----~~~~~~gt~~y~aPE~~~~--~~~~~~ 989 (1075)
||+|||+. +|+||||||+||+++.++ .+||+|||+++.+..... ......||+.|+|||++.+ ..++.+
T Consensus 180 ~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~ 256 (345)
T 3hko_A 180 ALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK 256 (345)
T ss_dssp HHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred HHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence 99999999 999999999999998777 899999999986543221 2345679999999999875 678899
Q ss_pred cchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 042958 990 CDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKV 1069 (1075)
Q Consensus 990 ~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 1069 (1075)
+||||||+++|||++|+.||...... .....+.......+.......+..+.+++.+||+.||++|||+.|+
T Consensus 257 ~DiwslG~il~el~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 328 (345)
T 3hko_A 257 CDAWSAGVLLHLLLMGAVPFPGVNDA--------DTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRA 328 (345)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCChH--------HHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 99999999999999999999743321 1122222222222222223345579999999999999999999999
Q ss_pred Hh
Q 042958 1070 SQ 1071 (1075)
Q Consensus 1070 l~ 1071 (1075)
++
T Consensus 329 l~ 330 (345)
T 3hko_A 329 LQ 330 (345)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 168
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.3e-34 Score=327.42 Aligned_cols=243 Identities=23% Similarity=0.291 Sum_probs=178.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|+.. +++.||||++...... .+.+.+|+.+++.++||||+++++++......+.
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l- 93 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI----DENVQREIINHRSLRHPNIVRFKEVILTPTHLAI- 93 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS----CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE-
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc----cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE-
Confidence 468999999999999999999665 7999999999754322 2568899999999999999999999987654332
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC--ceEeccccccccCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE--AHVSDFGIAKFLKP 961 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~DfGla~~~~~ 961 (1075)
+++... ....+++..++.++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++....
T Consensus 94 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~ 170 (361)
T 3uc3_A 94 IMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170 (361)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence 222211 235689999999999999999999999 9999999999999987765 99999999985433
Q ss_pred CCCceeccccccCccCccccccCCCCcc-cchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEK-CDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
. .......||+.|+|||++.+..++.+ +||||+|+++|||++|+.||......... ......+.......+.
T Consensus 171 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~~-- 243 (361)
T 3uc3_A 171 H-SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDY----RKTIQRILSVKYSIPD-- 243 (361)
T ss_dssp -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCH----HHHHHHHHTTCCCCCT--
T ss_pred c-CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHH----HHHHHHHhcCCCCCCC--
Confidence 2 22344679999999999988887655 89999999999999999999754332211 1122222222222211
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 244 DIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 1122346899999999999999999999986
No 169
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=6.7e-35 Score=326.66 Aligned_cols=253 Identities=23% Similarity=0.362 Sum_probs=195.1
Q ss_pred HHHHHHHhcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeE
Q 042958 807 YEEIIRATNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKF 879 (1075)
Q Consensus 807 ~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 879 (1075)
..+.....++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+++++++ +||||+++
T Consensus 19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC--CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 344555678999999999999999999964 356899999997543 333456899999999999 79999999
Q ss_pred EEEeeccccchhheecCccc-------------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 042958 880 YGFCSHVRHSLAMILSNNAA-------------------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRD 934 (1075)
Q Consensus 880 ~~~~~~~~~~l~~~~~~~~~-------------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~D 934 (1075)
++++...+..+.++++.... ...+++.+++.++.|+++||+|||+. +|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccccc
Confidence 99987765433333322111 11278999999999999999999999 999999
Q ss_pred CCCCCeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCc
Q 042958 935 ISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDF 1011 (1075)
Q Consensus 935 lk~~Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~ 1011 (1075)
|||+||+++.++.+||+|||+++........ .....||+.|+|||++.+..++.++||||+|+++|||++ |+.||..
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 253 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999999876544332 234567889999999999999999999999999999998 9999975
Q ss_pred cCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1012 ISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...... ......... ....+. ..+..+.+++.+||+.||++|||++||++.|+
T Consensus 254 ~~~~~~----~~~~~~~~~--~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 306 (316)
T 2xir_A 254 VKIDEE----FCRRLKEGT--RMRAPD----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 306 (316)
T ss_dssp CCCSHH----HHHHHHHTC--CCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cchhHH----HHHHhccCc--cCCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 432111 111111111 111111 22346899999999999999999999999874
No 170
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=4.9e-35 Score=321.41 Aligned_cols=246 Identities=24% Similarity=0.325 Sum_probs=188.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-cchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR-HSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~l~ 891 (1075)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ....+.+.+|++++++++||||+++++++.... ..+.
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 83 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY 83 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence 467888999999999999999664 7999999999765432 344678999999999999999999999885432 2222
Q ss_pred heecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEecCCCCCeeeCCCCCceEecc
Q 042958 892 MILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPP-----IVHRDISSKNVLLDFDNEAHVSDF 953 (1075)
Q Consensus 892 ~~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlk~~Nill~~~~~~kl~Df 953 (1075)
++++... ....+++..+++++.|++.||+|||+. + |+||||||+||+++.++.+||+||
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 2222221 123489999999999999999999998 6 999999999999999999999999
Q ss_pred ccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCC
Q 042958 954 GIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPR 1033 (1075)
Q Consensus 954 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
|.++.............|++.|+|||.+.+..++.++||||||+++|||++|+.||....... ....+....
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--------~~~~i~~~~ 232 (279)
T 2w5a_A 161 GLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE--------LAGKIREGK 232 (279)
T ss_dssp CHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHTC
T ss_pred chheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH--------HHHHHhhcc
Confidence 999876654333345678999999999998899999999999999999999999997443211 111111111
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.+.. ....+.++.+++.+||+.||++|||++||++.+.
T Consensus 233 ~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 233 FRRI---PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp CCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred cccC---CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 1111 1123346999999999999999999999998754
No 171
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-33 Score=320.25 Aligned_cols=306 Identities=29% Similarity=0.392 Sum_probs=143.5
Q ss_pred ccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCC
Q 042958 93 IGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLD 172 (1075)
Q Consensus 93 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (1075)
+..+++|++|++++|.+. .+| .+..+++|++|++++|++++. |. +..+++|++|++++|.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~------------ 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI------------ 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC------------
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc------------
Confidence 345566666666666654 233 255555666666666555532 21 44444444444444444432
Q ss_pred EEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCC
Q 042958 173 TLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNK 252 (1075)
Q Consensus 173 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 252 (1075)
..|..+++|++|++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.
T Consensus 104 --------------~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 104 --------------SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp --------------GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC
T ss_pred --------------hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC
Confidence 124444444444444444442211 4444444444444443322222 24445555555555555
Q ss_pred CCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcc
Q 042958 253 LSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSE 332 (1075)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 332 (1075)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 443222 4444444555555444443211 4445555555555555554332 4445555555555555543222
Q ss_pred cccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCC
Q 042958 333 IGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLA 412 (1075)
Q Consensus 333 ~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 412 (1075)
+..+++|++|++++|.+++. +.+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44455555555555554431 2344444555555555544332 2344445555555555555544445555555555
Q ss_pred eEEeeccccccccccccccccccceeccccccc
Q 042958 413 TLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKL 445 (1075)
Q Consensus 413 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 445 (1075)
+|++++|++++..| +..+++|++|++++|.|
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 55555555554333 44455555555555544
No 172
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2.1e-34 Score=316.08 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=188.6
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||+|++....... .+.+.+|++++++++||||+++++++......+.+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 467889999999999999999665 57899999987543222 46889999999999999999999999876543322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla~~~~ 960 (1075)
++... ....+++.++..++.|++.|++|||+. +|+||||||+||++ +.++.+||+|||++..+.
T Consensus 85 -~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 85 -MELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp -EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred -EeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 22211 234589999999999999999999999 99999999999999 788899999999998766
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .......||+.|+|||.+.+. ++.++||||+|+++|||++|+.||...... .....+.......+...
T Consensus 161 ~~-~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~ 230 (277)
T 3f3z_A 161 PG-KMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS--------EVMLKIREGTFTFPEKD 230 (277)
T ss_dssp TT-SCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCHHH
T ss_pred Cc-cchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhCCCCCCchh
Confidence 43 333456799999999988764 899999999999999999999999743221 11122222222222111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+|++.||++|||+.|+++
T Consensus 231 ~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 231 WLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1123457999999999999999999999985
No 173
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.7e-34 Score=321.01 Aligned_cols=251 Identities=21% Similarity=0.370 Sum_probs=187.8
Q ss_pred cCCCCCceecccCceEEEEEEE-----CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-----ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
+.|++.+.||+|+||.||+|.+ .+++.||||++..... ....+.+.+|++++++++||||+++++++...+..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 98 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG--GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN 98 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc--chhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence 5578889999999999999974 4689999999875432 22357899999999999999999999999765322
Q ss_pred -hhheecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 890 -LAMILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 890 -l~~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+.++++.. .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 99 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 99 GIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp CEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred eEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccccc
Confidence 22222221 1234589999999999999999999999 999999999999999999999999999988
Q ss_pred cCCCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcc-------ccchhhhhhhhhh
Q 042958 959 LKPDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSM-------SSSSLNLNIALDE 1028 (1075)
Q Consensus 959 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~-------~~~~~~~~~~~~~ 1028 (1075)
....... .....||..|+|||.+.+..++.++||||+|+++|||++|+.|+...... .............
T Consensus 176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
T 4e5w_A 176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255 (302)
T ss_dssp CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence 7655432 23456788899999999989999999999999999999999986422100 0000111111111
Q ss_pred ccC-CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1029 MLD-PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1029 ~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
... ...+.+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 256 ~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~ 298 (302)
T 4e5w_A 256 LKEGKRLPCP----PNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFE 298 (302)
T ss_dssp HHTTCCCCCC----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred HhccCCCCCC----CCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 111 122222 233456999999999999999999999999875
No 174
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=2.2e-34 Score=341.53 Aligned_cols=243 Identities=25% Similarity=0.420 Sum_probs=190.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.+. +++.||||+++.... ..++|.+|++++++++||||++++++|......+.+
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv 294 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc----chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence 466888899999999999999776 488999999975422 257899999999999999999999999775543222
Q ss_pred e-ecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 I-LSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~-~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
+ +... .....+++..++.++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 371 (495)
T 1opk_A 295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 371 (495)
T ss_dssp EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence 2 1111 1234588999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCc-eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 963 SSN-WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 963 ~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||........ ...... ..+.+.+
T Consensus 372 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~-----~~~~~~--~~~~~~~--- 441 (495)
T 1opk_A 372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV-----YELLEK--DYRMERP--- 441 (495)
T ss_dssp CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-----HHHHHT--TCCCCCC---
T ss_pred ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHHc--CCCCCCC---
Confidence 221 223346789999999998899999999999999999999 9999875432111 111111 1122222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..++..+.+++.+||+.||++||||+||++.|+
T Consensus 442 -~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~ 474 (495)
T 1opk_A 442 -EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFE 474 (495)
T ss_dssp -TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 223446999999999999999999999999875
No 175
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.3e-34 Score=325.89 Aligned_cols=255 Identities=18% Similarity=0.232 Sum_probs=178.4
Q ss_pred HHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
...++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|++++++++||||+++++++......+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 3457899999999999999999965 4799999999976532 2233567889999999999999999999998765433
Q ss_pred hheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-----CCCCceEecccccc
Q 042958 891 AMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD-----FDNEAHVSDFGIAK 957 (1075)
Q Consensus 891 ~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-----~~~~~kl~DfGla~ 957 (1075)
.+ ++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++ .++.+||+|||+++
T Consensus 110 lv-~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 110 LI-FEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp EE-EECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred EE-EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 22 22211 234589999999999999999999999 999999999999994 44569999999998
Q ss_pred ccCCCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh-------h---h
Q 042958 958 FLKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI-------A---L 1026 (1075)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~-------~---~ 1026 (1075)
.............||+.|+|||++.+. .++.++||||+||++|||++|+.||............... . .
T Consensus 186 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (329)
T 3gbz_A 186 AFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGV 265 (329)
T ss_dssp HHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTG
T ss_pred ccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhh
Confidence 876555555566789999999998875 4899999999999999999999999743321110000000 0 0
Q ss_pred hh--ccCCCCCCCCcC------cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1027 DE--MLDPRLPTPSCI------VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1027 ~~--~~~~~~~~~~~~------~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. ......+..... ......++.+++.+||+.||++|||++|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 266 TALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp GGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 00 000000000000 0112356899999999999999999999986
No 176
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.1e-34 Score=331.40 Aligned_cols=254 Identities=19% Similarity=0.252 Sum_probs=185.2
Q ss_pred HhcCCCCCceecccCceEEEEEEECC------CCEEEEEEccCCCCCchh--------HHHHHHHHHHHHhcCCcCceee
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELAS------GEIVAVKKFHSPLPGEMT--------FQQEFLNEVKALTEIRHRNIVK 878 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------g~~vavK~~~~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~ 878 (1075)
..++|++.+.||+|+||.||+|...+ ++.||||++......... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999997754 478999998654211000 0112445666778889999999
Q ss_pred EEEEeeccc---cchhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC--C
Q 042958 879 FYGFCSHVR---HSLAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD--F 944 (1075)
Q Consensus 879 l~~~~~~~~---~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~--~ 944 (1075)
+++++.... ....++++.. .....+++.+++.++.||+.||+|||+. +|+||||||+||+++ .
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~ 189 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKN 189 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSC
T ss_pred EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCC
Confidence 999987642 2222222221 1235689999999999999999999999 999999999999999 8
Q ss_pred CCCceEeccccccccCCCCCc-------eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 945 DNEAHVSDFGIAKFLKPDSSN-------WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 945 ~~~~kl~DfGla~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
++.+||+|||+++.+...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~ 269 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPK 269 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHH
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHH
Confidence 899999999999876543211 1334599999999999999999999999999999999999999974322211
Q ss_pred ch----hhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1018 SS----LNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1018 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.. ...........++.++. ...+.++.+++..||+.||++||++++|++.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~ 325 (364)
T 3op5_A 270 YVRDSKIRYRENIASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILL 325 (364)
T ss_dssp HHHHHHHHHHHCHHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 10 00011112222221111 112346999999999999999999999999874
No 177
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.3e-34 Score=319.29 Aligned_cols=244 Identities=25% Similarity=0.360 Sum_probs=185.5
Q ss_pred hcCCCCCceecccCceEEEEEEECC----CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELAS----GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
..+|++.+.||+|+||.||+|...+ +..||+|.+... ......+.+.+|+.++++++||||++++++|...+..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 101 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS 101 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence 3567888999999999999997542 236899998753 3344467899999999999999999999997665544
Q ss_pred hhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 890 LAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 890 l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
..++++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 102 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~ 178 (298)
T 3f66_A 102 PLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM 178 (298)
T ss_dssp CEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred eEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccc
Confidence 333333221 234578999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC----ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC-CC
Q 042958 960 KPDSS----NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD-PR 1033 (1075)
Q Consensus 960 ~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~ 1033 (1075)
..... ......+|+.|+|||.+.+..++.++||||+|+++|||++ |..||........ ...... ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~ 250 (298)
T 3f66_A 179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI--------TVYLLQGRR 250 (298)
T ss_dssp SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTH--------HHHHHTTCC
T ss_pred cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHH--------HHHHhcCCC
Confidence 54321 1233567889999999999999999999999999999999 5556543322111 111111 11
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 251 ~~~~~----~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 287 (298)
T 3f66_A 251 LLQPE----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 287 (298)
T ss_dssp CCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCc----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111 12345999999999999999999999999875
No 178
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-34 Score=317.18 Aligned_cols=243 Identities=23% Similarity=0.354 Sum_probs=188.8
Q ss_pred cCCCCCc-eecccCceEEEEEEEC---CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 815 NDFDDEH-CIGKGGQGSVYKAELA---SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 815 ~~~~~~~-~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
++|.+.+ .||+|+||.||+|... +++.||||++... ......+++.+|++++++++||||+++++++......+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc--cchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEE
Confidence 4455555 8999999999999653 5788999999764 23445678999999999999999999999996544333
Q ss_pred hheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 891 AMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 891 ~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
.+..... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 2222211 1235589999999999999999999999 9999999999999999999999999999887644
Q ss_pred CCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCC
Q 042958 963 SSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTP 1037 (1075)
Q Consensus 963 ~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1037 (1075)
... .....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||....... ....+... ....+
T Consensus 164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--------~~~~i~~~~~~~~~ 235 (287)
T 1u59_A 164 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--------VMAFIEQGKRMECP 235 (287)
T ss_dssp SCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH--------HHHHHHTTCCCCCC
T ss_pred cceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH--------HHHHHhcCCcCCCC
Confidence 332 123456889999999988889999999999999999998 999997433211 11111111 11111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++||++.|+++.|+
T Consensus 236 ----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 268 (287)
T 1u59_A 236 ----PECPPELYALMSDCWIYKWEDRPDFLTVEQRMR 268 (287)
T ss_dssp ----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred ----CCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 233456999999999999999999999999874
No 179
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=9.1e-36 Score=331.53 Aligned_cols=250 Identities=22% Similarity=0.348 Sum_probs=172.2
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhc--CCcCceeeEEEEeecccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTE--IRHRNIVKFYGFCSHVRH--- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~~--- 888 (1075)
.++|++.+.||+|+||.||+|+.. |+.||||++... ....+..|.+++.. ++||||+++++++.....
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 74 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 74 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T------THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc------chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccc
Confidence 367999999999999999999775 899999998642 13567788888887 799999999999877652
Q ss_pred chhheecCccc--------cCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 889 SLAMILSNNAA--------AKDLGWTRRMNVIKGISDALSYMH--------NDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 889 ~l~~~~~~~~~--------~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
.+.++++.... ...+++..+.+++.|++.|++||| +. +|+||||||+||+++.++.+||+|
T Consensus 75 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~D 151 (303)
T 3gxj_A 75 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEEEEEECCTTCCHHHHHHHCCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCC
T ss_pred eeEEEEeccCCCCHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEee
Confidence 22222222211 235678888999999999999999 77 999999999999999999999999
Q ss_pred cccccccCCCCCc----eeccccccCccCccccccC------CCCcccchHhHHHHHHHHHhC----------CCCCCcc
Q 042958 953 FGIAKFLKPDSSN----WTELAGTYGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG----------KHPRDFI 1012 (1075)
Q Consensus 953 fGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~~p~~~~ 1012 (1075)
||+++........ .....||+.|+|||++.+. .++.++||||||+++|||++| +.||...
T Consensus 152 Fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~ 231 (303)
T 3gxj_A 152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL 231 (303)
T ss_dssp CCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTT
T ss_pred cCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeecccccc
Confidence 9999876554332 2334799999999998776 344689999999999999999 5665432
Q ss_pred Cccccc-hhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1013 SSMSSS-SLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1013 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...... .............+..+.. ....+.+..+.+++.+||+.||++|||++||++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~ 293 (303)
T 3gxj_A 232 VPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293 (303)
T ss_dssp CC-CCCCC-CHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHhhcCCCcccc-ccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHH
Confidence 211111 1111111111122222211 112356678999999999999999999999999885
No 180
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-34 Score=317.67 Aligned_cols=243 Identities=25% Similarity=0.367 Sum_probs=185.1
Q ss_pred CCCCCceecccCceEEEEEEEC-CCC---EEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 816 DFDDEHCIGKGGQGSVYKAELA-SGE---IVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 816 ~~~~~~~lG~G~~g~Vy~~~~~-~g~---~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
.|...+.||+|+||.||+|... +++ .||+|++... ......+.+.+|+.++++++||||+++++++...+....
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 99 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI--TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH 99 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc--ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence 4555688999999999999653 333 7999998753 334456789999999999999999999999976655423
Q ss_pred heecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 892 MILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 892 ~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++.. .....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 100 VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp EEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 332221 1235678999999999999999999999 999999999999999999999999999986644
Q ss_pred CC----CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCC-CccCccccchhhhhhhhhhccCCCCCC
Q 042958 962 DS----SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPR-DFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 962 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
.. .......+++.|+|||.+.+..++.++||||+|+++|||++|+.|+ ....... ........ ...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~-----~~~~~~~~--~~~~~ 249 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD-----LTHFLAQG--RRLPQ 249 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG-----HHHHHHTT--CCCCC
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH-----HHHHhhcC--CCCCC
Confidence 22 1223456789999999999999999999999999999999966554 3222111 11111111 11122
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+. ..+..+.+++.+||+.||.+|||++|+++.|+
T Consensus 250 ~~----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~ 283 (298)
T 3pls_A 250 PE----YCPDSLYQVMQQCWEADPAVRPTFRVLVGEVE 283 (298)
T ss_dssp CT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred Cc----cchHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 21 22346999999999999999999999999875
No 181
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5e-35 Score=331.89 Aligned_cols=247 Identities=22% Similarity=0.371 Sum_probs=188.0
Q ss_pred HHhcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEee
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCS 884 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 884 (1075)
...++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.+++++ +||||+++++++.
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 119 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGACT 119 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 3457899999999999999999975 246689999997542 222347899999999999 9999999999997
Q ss_pred ccccchhheecCccc--------------------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 042958 885 HVRHSLAMILSNNAA--------------------------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVH 932 (1075)
Q Consensus 885 ~~~~~l~~~~~~~~~--------------------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 932 (1075)
..+..+.+ ++.... ...+++..++.++.||++||+|||+. +|+|
T Consensus 120 ~~~~~~lv-~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH 195 (344)
T 1rjb_A 120 LSGPIYLI-FEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVH 195 (344)
T ss_dssp SSSSCEEE-EECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEE
T ss_pred eCCccEEE-EecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Cccc
Confidence 75443222 211100 12378999999999999999999999 9999
Q ss_pred ecCCCCCeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCC
Q 042958 933 RDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPR 1009 (1075)
Q Consensus 933 ~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~ 1009 (1075)
|||||+||+++.++.+||+|||+++........ .....||+.|+|||.+.+..++.++||||||+++|||++ |+.||
T Consensus 196 ~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 275 (344)
T 1rjb_A 196 RDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY 275 (344)
T ss_dssp TTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred CCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999876544332 233557889999999998899999999999999999998 99999
Q ss_pred CccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1010 DFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
........ ......... ....+ ...+..+.+++.+||+.||.+|||+.||++.|+
T Consensus 276 ~~~~~~~~----~~~~~~~~~--~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 330 (344)
T 1rjb_A 276 PGIPVDAN----FYKLIQNGF--KMDQP----FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 330 (344)
T ss_dssp TTCCCSHH----HHHHHHTTC--CCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccCCcHHH----HHHHHhcCC--CCCCC----CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 75432211 111111111 11111 122346999999999999999999999999875
No 182
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=8.1e-35 Score=325.44 Aligned_cols=249 Identities=25% Similarity=0.372 Sum_probs=181.7
Q ss_pred HHHHhcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeec
Q 042958 810 IIRATNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSH 885 (1075)
Q Consensus 810 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 885 (1075)
+....++|.+.+.||+|+||.||+|... +++.||||++..... .....+.+.+|+.++++++||||+++++++..
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 107 (313)
T 3brb_A 29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLLGVCIE 107 (313)
T ss_dssp TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence 3345678888999999999999999653 345899999876433 33345789999999999999999999999876
Q ss_pred cccc----hhheecCc---------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC
Q 042958 886 VRHS----LAMILSNN---------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN 946 (1075)
Q Consensus 886 ~~~~----l~~~~~~~---------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~ 946 (1075)
.... ..++++.. .....+++.++++++.|+++||.|||+. +|+||||||+||+++.++
T Consensus 108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~ 184 (313)
T 3brb_A 108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDM 184 (313)
T ss_dssp -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTS
T ss_pred ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCC
Confidence 5431 11111111 2235689999999999999999999999 999999999999999999
Q ss_pred CceEeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhh
Q 042958 947 EAHVSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLN 1023 (1075)
Q Consensus 947 ~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~ 1023 (1075)
.+||+|||+++....... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||.......
T Consensus 185 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------- 257 (313)
T 3brb_A 185 TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE------- 257 (313)
T ss_dssp CEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-------
T ss_pred cEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH-------
Confidence 999999999987654322 2233457889999999999999999999999999999999 889987443211
Q ss_pred hhhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1024 IALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1024 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
........ .... ....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 258 -~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 304 (313)
T 3brb_A 258 -MYDYLLHGHRLKQ----PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLE 304 (313)
T ss_dssp -HHHHHHTTCCCCC----BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred -HHHHHHcCCCCCC----CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111111 1111 1233446999999999999999999999999875
No 183
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-33 Score=320.39 Aligned_cols=307 Identities=27% Similarity=0.432 Sum_probs=210.8
Q ss_pred cCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcc
Q 042958 69 FSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLN 148 (1075)
Q Consensus 69 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 148 (1075)
+..+++|++|++++|.+. .+| .++.+++|++|++++|.+++. |. +.++++|++|++++|.++. +| .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 457899999999999997 455 499999999999999999854 44 9999999999999999985 33 688999999
Q ss_pred eeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccC
Q 042958 149 YLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNS 228 (1075)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 228 (1075)
+|++++|.+.++.+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999888755 88888888888888865544443 7778888888888887774433 6677777777777777
Q ss_pred CCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCC
Q 042958 229 LFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHS 308 (1075)
Q Consensus 229 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 308 (1075)
+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 764322 6666777777777777664433 5555666666666666654322 55555555555555555532 23
Q ss_pred CCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccc
Q 042958 309 LGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLS 388 (1075)
Q Consensus 309 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 388 (1075)
+..+++|++|+++ +|++++. +.+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 261 ~~~l~~L~~L~l~------------------------~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 261 VKDLTKLKMLNVG------------------------SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECC------------------------SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred HhcCCCcCEEEcc------------------------CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 4444445555444 4444432 2345555666666666666555556666666666
Q ss_pred eeeeccccccccCChhhccCCCCCeEEeeccccc
Q 042958 389 MLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLS 422 (1075)
Q Consensus 389 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 422 (1075)
+|++++|++++..| +..+++|++|++++|.|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666666665444 666667777777776664
No 184
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.6e-34 Score=326.62 Aligned_cols=249 Identities=23% Similarity=0.338 Sum_probs=183.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS--- 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 889 (1075)
.++|+..+.||+|+||.||+|.. .+|+.||||++..... .....+++.+|+++++.++||||+++++++......
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 46788999999999999999966 5799999999976532 334467889999999999999999999998765321
Q ss_pred --hhheecCcc-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 890 --LAMILSNNA-------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 890 --l~~~~~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
++++++..+ ....+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 103 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 179 (367)
T 1cm8_A 103 TDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD 179 (367)
T ss_dssp CCCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred ceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence 122222211 134688999999999999999999999 99999999999999999999999999998754
Q ss_pred CCCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh-----------------
Q 042958 961 PDSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL----------------- 1022 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~----------------- 1022 (1075)
.. .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.............
T Consensus 180 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~ 256 (367)
T 1cm8_A 180 SE---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSD 256 (367)
T ss_dssp SS---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCH
T ss_pred cc---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhH
Confidence 32 345678999999999877 678999999999999999999999997543211100000
Q ss_pred --hhhhhhccCCCCCC--CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1023 --NIALDEMLDPRLPT--PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1023 --~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....... +..+. ........+..+.+++.+|++.||++|||++|+++
T Consensus 257 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 257 EAKNYMKGL--PELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHHHHHHHS--CCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHhC--CCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 0000000 00000 00111233456899999999999999999999986
No 185
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2e-34 Score=314.96 Aligned_cols=241 Identities=18% Similarity=0.262 Sum_probs=186.3
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-chhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH-SLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~l~~ 892 (1075)
.++|++.+.||+|+||.||+|..+ |+.||||++..... .....+.+.+|+.++++++||||+++++++..... ...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW-STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL 86 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC-CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence 467888999999999999999886 89999999976533 33445789999999999999999999999977522 2222
Q ss_pred eecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 893 ILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPP--IVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 893 ~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
+++... ....+++.+++.++.|+++||+|||+. + |+||||||+||+++.++.++++|||++...
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 222111 122589999999999999999999998 7 999999999999999999999999987653
Q ss_pred CCCCCceeccccccCccCccccccCCCCc---ccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTE---KCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
.. ....||+.|+|||.+.+..++. ++||||+|+++|||++|+.||........ ..........+..+
T Consensus 164 ~~-----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~- 233 (271)
T 3kmu_A 164 QS-----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI----GMKVALEGLRPTIP- 233 (271)
T ss_dssp SC-----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH----HHHHHHSCCCCCCC-
T ss_pred cc-----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH----HHHHHhcCCCCCCC-
Confidence 32 2346899999999998765544 79999999999999999999974332111 01111111111111
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 234 -----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~ 266 (271)
T 3kmu_A 234 -----PGISPHVSKLMKICMNEDPAKRPKFDMIVPILE 266 (271)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 223446999999999999999999999999875
No 186
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=7.6e-34 Score=327.47 Aligned_cols=241 Identities=21% Similarity=0.270 Sum_probs=174.8
Q ss_pred cCCCCC-ceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHh-cCCcCceeeEEEEeec---ccc
Q 042958 815 NDFDDE-HCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALT-EIRHRNIVKFYGFCSH---VRH 888 (1075)
Q Consensus 815 ~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~---~~~ 888 (1075)
++|.+. +.||+|+||.||+|... +|+.||||++... ..+.+|++++. ..+||||+++++++.. ...
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 456555 68999999999999654 7999999998531 45677888874 4589999999998864 122
Q ss_pred chhheecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC---CCCceEeccc
Q 042958 889 SLAMILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF---DNEAHVSDFG 954 (1075)
Q Consensus 889 ~l~~~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG 954 (1075)
.++++++... ....+++.++..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecc
Confidence 2333332221 123589999999999999999999999 9999999999999998 7899999999
Q ss_pred cccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 955 IAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 955 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
+++..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||............. ..+.....
T Consensus 210 ~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~----~~i~~~~~ 284 (400)
T 1nxk_A 210 FAKETTSH-NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----TRIRMGQY 284 (400)
T ss_dssp TCEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH----HHHHHTCC
T ss_pred cccccCCC-CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH----HHHHcCcc
Confidence 99876533 23345678999999999999999999999999999999999999997543322111111 11111111
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+.......+.++.+++.+||+.||++|||++|+++
T Consensus 285 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 285 EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp CCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111112234456999999999999999999999986
No 187
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.5e-34 Score=343.48 Aligned_cols=245 Identities=24% Similarity=0.347 Sum_probs=193.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++...........+.+.+|+.++++++||||+++++++......+.+
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 457888999999999999999665 7999999998765443334467899999999999999999999999875543322
Q ss_pred ee-cCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEeccccccccCC
Q 042958 893 IL-SNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 893 ~~-~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla~~~~~ 961 (1075)
.. ... .....+++..+..++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+++.+..
T Consensus 105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~ 181 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181 (484)
T ss_dssp ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence 21 111 1235689999999999999999999999 99999999999999 5678999999999987764
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.. ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+.......+....
T Consensus 182 ~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~~~~ 251 (484)
T 3nyv_A 182 SK-KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEY--------DILKKVEKGKYTFELPQW 251 (484)
T ss_dssp CC-SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCSGGG
T ss_pred cc-ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCCccc
Confidence 43 3345679999999999876 6899999999999999999999999743321 112222222222222223
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+..+.+++.+||+.||++|||++|+++
T Consensus 252 ~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 252 KKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp GGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 345567999999999999999999999986
No 188
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1e-34 Score=326.01 Aligned_cols=249 Identities=22% Similarity=0.336 Sum_probs=192.6
Q ss_pred HHHHHhcCCCCCceecccCceEEEEEEEC------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEE
Q 042958 809 EIIRATNDFDDEHCIGKGGQGSVYKAELA------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGF 882 (1075)
Q Consensus 809 e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 882 (1075)
++....++|++.+.||+|+||.||+|... +++.||||++... .......++.+|+++++.++||||++++++
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~ 96 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA--ASMRERIEFLNEASVMKEFNCHHVVRLLGV 96 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT--SCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc--cCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence 44456788999999999999999999653 4788999999754 233345679999999999999999999999
Q ss_pred eeccccchhheecCccc-------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC
Q 042958 883 CSHVRHSLAMILSNNAA-------------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD 943 (1075)
Q Consensus 883 ~~~~~~~l~~~~~~~~~-------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~ 943 (1075)
+......+.+ ++.... ...+++.++++++.|++.||+|||+. +|+||||||+||+++
T Consensus 97 ~~~~~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~ 172 (322)
T 1p4o_A 97 VSQGQPTLVI-MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVA 172 (322)
T ss_dssp ECSSSSCEEE-EECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEEC
T ss_pred EccCCccEEE-EEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEc
Confidence 9775543222 221111 14568899999999999999999999 999999999999999
Q ss_pred CCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchh
Q 042958 944 FDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSL 1020 (1075)
Q Consensus 944 ~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~ 1020 (1075)
.++.+||+|||+++........ .....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......
T Consensus 173 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~----- 247 (322)
T 1p4o_A 173 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE----- 247 (322)
T ss_dssp TTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH-----
T ss_pred CCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH-----
Confidence 9999999999999866433221 223456889999999999899999999999999999999 89998643221
Q ss_pred hhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1021 NLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.....+........ ....+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 248 ---~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~ 295 (322)
T 1p4o_A 248 ---QVLRFVMEGGLLDK---PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 295 (322)
T ss_dssp ---HHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHG
T ss_pred ---HHHHHHHcCCcCCC---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 11122222222111 1223346899999999999999999999999875
No 189
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.5e-34 Score=334.34 Aligned_cols=193 Identities=24% Similarity=0.361 Sum_probs=155.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----H 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~ 888 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++||||+++++++.... .
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT-TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh-cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 46899999999999999999965 468999999997643 33444678999999999999999999999987653 1
Q ss_pred chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++++++... ....+++..++.++.||++||+|||+. +|+||||||+||+++.++.+||+|||+|+...
T Consensus 104 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~ 180 (432)
T 3n9x_A 104 ELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTIN 180 (432)
T ss_dssp CEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred eEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence 2222222221 234589999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC----------------------ceeccccccCccCcccc-ccCCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 961 PDSS----------------------NWTELAGTYGYVAPELA-YTMKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 961 ~~~~----------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
.... .....+||+.|+|||++ .+..++.++||||+||++|||++|..||.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp ------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 4321 13557899999999986 56679999999999999999998766654
No 190
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=3.7e-34 Score=323.03 Aligned_cols=245 Identities=23% Similarity=0.373 Sum_probs=188.4
Q ss_pred HhcCCCCCceecccCceEEEEEEE--------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEe
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL--------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFC 883 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~--------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 883 (1075)
..++|++.+.||+|+||.||+|+. .+++.||||++.... .....+.+.+|+++++++ +||||+++++++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 357889999999999999999976 357789999997542 334467899999999999 999999999999
Q ss_pred eccccchhheecCcc-------------------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCC
Q 042958 884 SHVRHSLAMILSNNA-------------------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSK 938 (1075)
Q Consensus 884 ~~~~~~l~~~~~~~~-------------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 938 (1075)
...+..+.+ ++... ....+++.+++.++.||++||+|||+. +|+||||||+
T Consensus 111 ~~~~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~ 186 (334)
T 2pvf_A 111 TQDGPLYVI-VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAAR 186 (334)
T ss_dssp CSSSCCEEE-EECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred ccCCceEEE-EECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccc
Confidence 775543222 21111 012488999999999999999999999 9999999999
Q ss_pred CeeeCCCCCceEeccccccccCCCCCc--eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCcc
Q 042958 939 NVLLDFDNEAHVSDFGIAKFLKPDSSN--WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSM 1015 (1075)
Q Consensus 939 Nill~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~ 1015 (1075)
||+++.++.+||+|||+++........ .....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......
T Consensus 187 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~ 266 (334)
T 2pvf_A 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE 266 (334)
T ss_dssp GEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH
T ss_pred eEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH
Confidence 999999999999999999876644322 223456789999999998889999999999999999999 99998743321
Q ss_pred ccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1016 SSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. ......... ....+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 267 ~-----~~~~~~~~~--~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 314 (334)
T 2pvf_A 267 E-----LFKLLKEGH--RMDKP----ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 314 (334)
T ss_dssp H-----HHHHHHHTC--CCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred H-----HHHHHhcCC--CCCCC----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 1 111111111 11111 123346999999999999999999999999874
No 191
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=331.82 Aligned_cols=255 Identities=18% Similarity=0.289 Sum_probs=193.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc-hh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS-LA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-l~ 891 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++..... ....+.+.+|++++++++||||+++++++...... ..
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 85 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence 357888999999999999999665 699999999875322 22256788999999999999999999998765432 22
Q ss_pred heecCc------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee----CCCCCceEecccc
Q 042958 892 MILSNN------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL----DFDNEAHVSDFGI 955 (1075)
Q Consensus 892 ~~~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~DfGl 955 (1075)
++++.. .....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~ 162 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (396)
T ss_dssp EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence 222221 1122389999999999999999999999 99999999999999 7777899999999
Q ss_pred ccccCCCCCceeccccccCccCcccccc--------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYT--------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
++..... .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||..................
T Consensus 163 a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 241 (396)
T 4eut_A 163 ARELEDD-EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (396)
T ss_dssp CEECCCG-GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH
T ss_pred ceEccCC-CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc
Confidence 9876543 23345679999999998865 56788999999999999999999999744332211111111110
Q ss_pred h-----------------ccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1028 E-----------------MLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1028 ~-----------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. ......+............+.+++.+||+.||++||+++|+++.++
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~ 305 (396)
T 4eut_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (396)
T ss_dssp SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHH
Confidence 0 0011223333345677888999999999999999999999988753
No 192
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=3.3e-34 Score=327.97 Aligned_cols=253 Identities=21% Similarity=0.275 Sum_probs=181.4
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 888 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++.++||||+++++++.....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 36789999999999999999965 4789999999876432 33446778999999999999999999999876542
Q ss_pred -chhheecCccc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 889 -SLAMILSNNAA------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 889 -~l~~~~~~~~~------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
.+.++++.... ...+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 103 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~ 179 (371)
T 2xrw_A 103 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 179 (371)
T ss_dssp CEEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC------
T ss_pred cceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeeccccccc
Confidence 22222222221 23578999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh--------------hhhhh
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL--------------NIALD 1027 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~--------------~~~~~ 1027 (1075)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||............. .....
T Consensus 180 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 258 (371)
T 2xrw_A 180 S-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVR 258 (371)
T ss_dssp -----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHH
T ss_pred c-cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHH
Confidence 3 22344678999999999999999999999999999999999999997543211000000 00000
Q ss_pred hcc--CCCC--------------CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EML--DPRL--------------PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~--~~~~--------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
... .+.. +...........++.+++.+|++.||++|||++|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 259 TYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000 0000 1111111233568999999999999999999999986
No 193
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3e-34 Score=315.82 Aligned_cols=245 Identities=21% Similarity=0.288 Sum_probs=186.6
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc---hhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE---MTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
++|++.+.||+|+||.||+|... +|+.||+|++....... ....+.+.+|+.++++++||||+++++++......+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56888999999999999999765 79999999987543221 123578999999999999999999999998765432
Q ss_pred hheecC-c-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC----CceEeccccccc
Q 042958 891 AMILSN-N-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN----EAHVSDFGIAKF 958 (1075)
Q Consensus 891 ~~~~~~-~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfGla~~ 958 (1075)
.++... . .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||.+..
T Consensus 85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~ 161 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK 161 (283)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccccee
Confidence 222111 1 1235689999999999999999999999 999999999999999877 899999999987
Q ss_pred cCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 959 LKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
..... ......|++.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 162 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~ 232 (283)
T 3bhy_A 162 IEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ--------ETLTNISAVNYDFDE 232 (283)
T ss_dssp CC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHTTCCCCCH
T ss_pred ccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH--------HHHHHhHhcccCCcc
Confidence 65432 234457899999999999999999999999999999999999999743221 111112122211111
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+..+.+++.+||+.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 233 EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 111223456899999999999999999999986
No 194
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.7e-34 Score=329.72 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=188.5
Q ss_pred cHHHHHHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-----cCceeeE
Q 042958 806 VYEEIIRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-----HRNIVKF 879 (1075)
Q Consensus 806 ~~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l 879 (1075)
++.+.....++|++.+.||+|+||.||+|.. .+++.||||++.. .....+.+..|+.+++.++ ||||+++
T Consensus 26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN----IKKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS----CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc----chhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 3344445568999999999999999999966 5789999999863 2334567888999999996 9999999
Q ss_pred EEEeeccccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC-----
Q 042958 880 YGFCSHVRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF----- 944 (1075)
Q Consensus 880 ~~~~~~~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~----- 944 (1075)
++++...+..+.+ ++... ....+++.++..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 102 ~~~~~~~~~~~lv-~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~ 177 (360)
T 3llt_A 102 HGKFMYYDHMCLI-FEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEK 177 (360)
T ss_dssp EEEEEETTEEEEE-ECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCE
T ss_pred cceeeECCeeEEE-EcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccc
Confidence 9998876543222 22111 123488999999999999999999999 9999999999999986
Q ss_pred --------------------CCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh
Q 042958 945 --------------------DNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK 1004 (1075)
Q Consensus 945 --------------------~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt 1004 (1075)
++.+||+|||+|+..... .....||+.|+|||++.+..++.++||||+||++|||++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~ 254 (360)
T 3llt_A 178 SLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYT 254 (360)
T ss_dssp EEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred cccchhcccccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHH
Confidence 789999999999875432 234678999999999999999999999999999999999
Q ss_pred CCCCCCccCccccchhhhh-------hh--------hhhccC-----CCCCCCCcCc--------------HHHHHHHHH
Q 042958 1005 GKHPRDFISSMSSSSLNLN-------IA--------LDEMLD-----PRLPTPSCIV--------------QDKLISIVE 1050 (1075)
Q Consensus 1005 g~~p~~~~~~~~~~~~~~~-------~~--------~~~~~~-----~~~~~~~~~~--------------~~~~~~l~~ 1050 (1075)
|+.||.............. .. ...... ..++...... ......+.+
T Consensus 255 g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (360)
T 3llt_A 255 GSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCD 334 (360)
T ss_dssp SSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHH
Confidence 9999974332110000000 00 000000 0001000000 001146789
Q ss_pred HHHHccCCCCCCCCCHHHHHh
Q 042958 1051 VAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1051 li~~cl~~dP~~RPs~~evl~ 1071 (1075)
++.+||+.||++|||++|+++
T Consensus 335 li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 335 FLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHhcCChhhCCCHHHHhc
Confidence 999999999999999999986
No 195
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2e-34 Score=340.91 Aligned_cols=246 Identities=23% Similarity=0.310 Sum_probs=190.6
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|+..+.||+|+||.||+|+.. +|+.||+|++...........+.+..|++++++++||||+++++++......+ +
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~-l 262 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLC-L 262 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-E
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEE-E
Confidence 367888899999999999999765 79999999986432222223467889999999999999999999987765432 2
Q ss_pred eecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 893 ILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 893 ~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
+++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.+
T Consensus 263 VmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 263 VMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp EECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 222111 133589999999999999999999999 9999999999999999999999999999987
Q ss_pred CCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCc
Q 042958 960 KPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSC 1039 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1075)
..........+||+.|+|||++.+..++.++||||+||++|||++|+.||......... ......+.......+.
T Consensus 340 ~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~----~~~~~~i~~~~~~~p~- 414 (543)
T 3c4z_A 340 KAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN----KELKQRVLEQAVTYPD- 414 (543)
T ss_dssp CTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCH----HHHHHHHHHCCCCCCT-
T ss_pred cCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhH----HHHHHHHhhcccCCCc-
Confidence 65544445568999999999999999999999999999999999999999754321111 1111222222222222
Q ss_pred CcHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHh
Q 042958 1040 IVQDKLISIVEVAISCLDENPESRPTM-----PKVSQ 1071 (1075)
Q Consensus 1040 ~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1071 (1075)
..+..+.+++.+||++||++||++ +||++
T Consensus 415 ---~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 415 ---KFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp ---TSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred ---ccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 233468999999999999999975 56653
No 196
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.3e-34 Score=315.91 Aligned_cols=237 Identities=27% Similarity=0.405 Sum_probs=180.6
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|+.. |+.||||++.... ..+.+.+|++++++++||||+++++++......+.++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 467889999999999999999876 8999999986532 2467899999999999999999999986655443333
Q ss_pred ecCccc-----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 894 LSNNAA-----------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 894 ~~~~~~-----------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++.... ...+++..+.+++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~ 170 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 170 (278)
T ss_dssp ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred EecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc
Confidence 333221 12278888999999999999999999 9999999999999999999999999999865432
Q ss_pred CCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCCCcC
Q 042958 963 SSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTPSCI 1040 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1040 (1075)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||....... ....+... ....
T Consensus 171 ---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~--------~~~~~~~~~~~~~---- 235 (278)
T 1byg_A 171 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--------VVPRVEKGYKMDA---- 235 (278)
T ss_dssp --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--------HHHHHTTTCCCCC----
T ss_pred ---ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--------HHHHHhcCCCCCC----
Confidence 223467889999999998899999999999999999998 999987433211 11111111 1111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 236 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 269 (278)
T 1byg_A 236 PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE 269 (278)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHH
Confidence 1223456999999999999999999999999875
No 197
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=6.3e-34 Score=318.69 Aligned_cols=249 Identities=24% Similarity=0.412 Sum_probs=189.2
Q ss_pred CCCCceecccCceEEEEEEEC-----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-ch
Q 042958 817 FDDEHCIGKGGQGSVYKAELA-----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH-SL 890 (1075)
Q Consensus 817 ~~~~~~lG~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~l 890 (1075)
|++.+.||+|+||.||++.+. +|+.||||++... ......+.+.+|++++++++||||+++++++...+. .+
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 110 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD--AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASL 110 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc--cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceE
Confidence 488899999999999988543 6889999999764 233446789999999999999999999999987532 22
Q ss_pred hheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 891 AMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 891 ~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
.++++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 111 QLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 22222221 234589999999999999999999999 9999999999999999999999999999987654
Q ss_pred CCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccc-----c-chhhhhhhhhhccCC-
Q 042958 963 SSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMS-----S-SSLNLNIALDEMLDP- 1032 (1075)
Q Consensus 963 ~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~-----~-~~~~~~~~~~~~~~~- 1032 (1075)
... .....+|+.|+|||++.+..++.++||||+|+++|||++|+.||....... . ..........+....
T Consensus 188 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERG 267 (318)
T ss_dssp CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcc
Confidence 332 233567888999999999889999999999999999999999986422110 0 000000111111111
Q ss_pred -CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1033 -RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1033 -~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+.+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 268 ~~~~~~----~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 306 (318)
T 3lxp_A 268 ERLPRP----DKCPAEVYHLMKNCWETEASFRPTFENLIPILK 306 (318)
T ss_dssp CCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cCCCCC----ccccHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 11111 233456999999999999999999999999875
No 198
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.6e-34 Score=319.25 Aligned_cols=247 Identities=25% Similarity=0.395 Sum_probs=187.3
Q ss_pred HhcCCCCCc-eecccCceEEEEEEE---CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 813 ATNDFDDEH-CIGKGGQGSVYKAEL---ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 813 ~~~~~~~~~-~lG~G~~g~Vy~~~~---~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
...+|++.+ .||+|+||.||+|.. .+++.||||++.... ......+++.+|+++++.++||||+++++++.....
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~ 92 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW 92 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCc
Confidence 346677777 999999999999954 246889999997653 233446789999999999999999999999954433
Q ss_pred chhheecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 889 SLAMILSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 889 ~l~~~~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
.+.+.+... .....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 332222211 1234589999999999999999999999 999999999999999999999999999987765
Q ss_pred CCCce---eccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 962 DSSNW---TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 962 ~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
..... ....+++.|+|||.+.+..++.++||||||+++|||++ |+.||....... ......... ....+
T Consensus 170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-----~~~~~~~~~--~~~~~ 242 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-----VTAMLEKGE--RMGCP 242 (291)
T ss_dssp TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-----HHHHHHTTC--CCCCC
T ss_pred CCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHcCC--CCCCC
Confidence 44322 22346788999999998889999999999999999999 999997433211 111111111 11111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++||++.||++.|+
T Consensus 243 ----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 275 (291)
T 1xbb_A 243 ----AGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 275 (291)
T ss_dssp ----TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 223446999999999999999999999999875
No 199
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.3e-35 Score=326.21 Aligned_cols=288 Identities=22% Similarity=0.280 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHhccCCCCCCCcCCCCcCCCCCCCCCccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEcc
Q 042958 2 EEAHALLRWKTSLQNHNNGSLLSSWTLNNVTKTSPCAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLW 81 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~~~l~sw~~~~~~~~~~c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~ 81 (1075)
+|++||++||+++..++. +.+++|..........|.|.|++|+.... .+. -...+++++|||+
T Consensus 27 ~~~~aLl~~k~~~~~~~~-~~~~~w~~~~~~~~~~~~~~g~~~~~~~~-------------~l~---~~~~~~l~~L~L~ 89 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIETRTGRALKATAD-------------LLE---DATQPGRVALELR 89 (328)
T ss_dssp CHHHHHHHHHHHHHHCCT-THHHHHHHHTTTCTTSCCSHHHHHHHHHH-------------HHH---HHTSTTCCEEEEE
T ss_pred hHHHHHHHHHHhccCCch-hhhhhhcccccccccccccCCcchhhhHH-------------HHh---cccccceeEEEcc
Confidence 689999999999976654 57788942222233349999999963210 000 1124567788888
Q ss_pred CCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCC
Q 042958 82 HNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLI 161 (1075)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 161 (1075)
+|.++ .+|+.++++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|++++|.+.+.+
T Consensus 90 ~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 90 SVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp SSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred CCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc
Confidence 88887 77777888888888888888887 77888888888888888888887 67777777777777777777766666
Q ss_pred CCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCC
Q 042958 162 PPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLR 241 (1075)
Q Consensus 162 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (1075)
|..+... ..+..|.++++|++|+|++|+++ .+|..+.++++|++|+|++|++++ +|..+..++
T Consensus 167 p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~ 229 (328)
T 4fcg_A 167 PEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP 229 (328)
T ss_dssp CSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT
T ss_pred ChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC
Confidence 6554431 11223455666666666666666 566666666677777777776664 444566677
Q ss_pred CCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecc
Q 042958 242 SLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIH 321 (1075)
Q Consensus 242 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 321 (1075)
+|++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++++++|+.+++.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 77777777777766667777777777777777777666677677777777777777777777777777777777777776
Q ss_pred ccccc
Q 042958 322 NNSLS 326 (1075)
Q Consensus 322 ~N~l~ 326 (1075)
.+.+.
T Consensus 310 ~~~~~ 314 (328)
T 4fcg_A 310 PHLQA 314 (328)
T ss_dssp GGGSC
T ss_pred HHHHH
Confidence 66554
No 200
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.5e-34 Score=324.00 Aligned_cols=253 Identities=23% Similarity=0.362 Sum_probs=185.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+.+|+.++++++||||+++++++...+..+.+
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD-DDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCS-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCC-CchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 467888999999999999999665 69999999986543 3344466788999999999999999999999876543322
Q ss_pred eecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++.. .....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 103 -~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 103 -FEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp -EECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred -EecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 2211 1235689999999999999999999999 99999999999999999999999999998776555
Q ss_pred CceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh----------------hhhh
Q 042958 964 SNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL----------------NIAL 1026 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~----------------~~~~ 1026 (1075)
.......||+.|+|||++.+. .++.++||||+|+++|||++|+.||............. ....
T Consensus 179 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (331)
T 4aaa_A 179 EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVF 258 (331)
T ss_dssp -----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGG
T ss_pred cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcccc
Confidence 555567899999999998875 68999999999999999999999997543221100000 0000
Q ss_pred hhccCCCCCCCCc---CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1027 DEMLDPRLPTPSC---IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1027 ~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+....... .....+..+.+++.+||+.||++|||++|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 259 AGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp TTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0011111111000 01123457999999999999999999999986
No 201
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=6.3e-34 Score=316.59 Aligned_cols=242 Identities=25% Similarity=0.394 Sum_probs=191.9
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.+.|+..+.||+|+||.||+|.. .+++.||||++...... ...+.+.+|+.+++.++||||+++++++......+.
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l- 97 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWI- 97 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS--TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE-
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE-
Confidence 46688899999999999999965 47999999998765322 235789999999999999999999999876554322
Q ss_pred eecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 893 ILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 893 ~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+........
T Consensus 98 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 174 (303)
T 3a7i_A 98 IMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 174 (303)
T ss_dssp EEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred EEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence 222211 235689999999999999999999999 999999999999999999999999999988765544
Q ss_pred ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHH
Q 042958 965 NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDK 1044 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1075)
......|++.|+|||++.+..++.++||||||+++|||++|+.||....... ..........+..+ ...
T Consensus 175 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~------~~~ 243 (303)
T 3a7i_A 175 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK-----VLFLIPKNNPPTLE------GNY 243 (303)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HHHHHHHSCCCCCC------SSC
T ss_pred ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH-----HHHHhhcCCCCCCc------ccc
Confidence 4455679999999999999999999999999999999999999987433211 11111111111111 122
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHhh
Q 042958 1045 LISIVEVAISCLDENPESRPTMPKVSQL 1072 (1075)
Q Consensus 1045 ~~~l~~li~~cl~~dP~~RPs~~evl~~ 1072 (1075)
+..+.+++.+||+.||++|||++|+++.
T Consensus 244 ~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 244 SKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp CHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 3458999999999999999999999863
No 202
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=7.7e-35 Score=321.47 Aligned_cols=245 Identities=25% Similarity=0.406 Sum_probs=192.3
Q ss_pred HHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
...++|++.+.||+|+||.||+|... +++.||+|++... ....+++.+|++++++++||||+++++++......+
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 85 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 85 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC----STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEE
Confidence 34678888999999999999999765 5889999998643 223578999999999999999999999997765432
Q ss_pred hheecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 891 AMILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 891 ~~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++.... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+....
T Consensus 86 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 162 (288)
T 3kfa_A 86 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162 (288)
T ss_dssp EEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred EEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence 2221111 1234589999999999999999999999 99999999999999999999999999998776
Q ss_pred CCCCc-eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 961 PDSSN-WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 961 ~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
..... .....+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||........ ........ ....+
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~-----~~~~~~~~--~~~~~- 234 (288)
T 3kfa_A 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV-----YELLEKDY--RMERP- 234 (288)
T ss_dssp SSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-----HHHHHTTC--CCCCC-
T ss_pred CCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHhccC--CCCCC-
Confidence 44332 233456889999999998999999999999999999999 9999874432111 11111111 11111
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+|++.||++|||++|+++.|+
T Consensus 235 ---~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~ 267 (288)
T 3kfa_A 235 ---EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFE 267 (288)
T ss_dssp ---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHH
Confidence 223346999999999999999999999999874
No 203
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.5e-34 Score=313.60 Aligned_cols=241 Identities=23% Similarity=0.399 Sum_probs=189.3
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
.++|++.+.||+|+||.||+|...+++.||+|++...... .+++.+|++++++++||||+++++++......+ ++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-lv 81 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC-LV 81 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE-EE
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeE-EE
Confidence 3678888999999999999999888999999999754322 367899999999999999999999997754432 22
Q ss_pred ecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 894 LSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 894 ~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 82 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 158 (267)
T 3t9t_A 82 TEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 158 (267)
T ss_dssp ECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred EeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccc
Confidence 22211 124588999999999999999999999 99999999999999999999999999998764321
Q ss_pred C-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CCCCCCcC
Q 042958 964 S-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RLPTPSCI 1040 (1075)
Q Consensus 964 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1040 (1075)
. ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+... ....+.
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--------~~~~~i~~~~~~~~~~-- 228 (267)
T 3t9t_A 159 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--------EVVEDISTGFRLYKPR-- 228 (267)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--------HHHHHHHTTCCCCCCT--
T ss_pred ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--------HHHHHHhcCCcCCCCc--
Confidence 1 1223456788999999998899999999999999999999 89998743221 111111111 111111
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 229 --~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~ 260 (267)
T 3t9t_A 229 --LASTHVYQIMNHCWRERPEDRPAFSRLLRQLA 260 (267)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 22346899999999999999999999999874
No 204
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.4e-34 Score=319.98 Aligned_cols=246 Identities=24% Similarity=0.421 Sum_probs=181.7
Q ss_pred hcCCCCCceecccCceEEEEEEEC--CCC--EEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA--SGE--IVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~--~g~--~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.++|++.+.||+|+||.||+|++. +++ .||||++...........+.+.+|++++++++||||+++++++......
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 96 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK 96 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCce
Confidence 467889999999999999999753 333 6899998765444445568899999999999999999999999876533
Q ss_pred hhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 890 LAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 890 l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+.+...... ....+++.++.+++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 173 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ 173 (291)
T ss_dssp EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccccc
Confidence 333222111 124588999999999999999999999 999999999999999999999999999988765
Q ss_pred CCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC--CCCC
Q 042958 962 DSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD--PRLP 1035 (1075)
Q Consensus 962 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 1035 (1075)
.... .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+.. ...+
T Consensus 174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--------~~~~~~~~~~~~~~ 245 (291)
T 1u46_A 174 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--------QILHKIDKEGERLP 245 (291)
T ss_dssp -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--------HHHHHHHTSCCCCC
T ss_pred cccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH--------HHHHHHHccCCCCC
Confidence 4332 223457888999999998889999999999999999999 99999743321 11111111 1122
Q ss_pred CCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1036 TPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1036 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 246 ~~----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 280 (291)
T 1u46_A 246 RP----EDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLL 280 (291)
T ss_dssp CC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CC----cCcCHHHHHHHHHHccCCcccCcCHHHHHHHHH
Confidence 22 223456999999999999999999999999874
No 205
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=346.15 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=181.5
Q ss_pred eecccCceEEEEEEEC---CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhheecCc-
Q 042958 822 CIGKGGQGSVYKAELA---SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMILSNN- 897 (1075)
Q Consensus 822 ~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~~~~~- 897 (1075)
.||+|+||.||+|.++ ++..||||+++... .....++|.+|++++++++|||||+++++|......+.+.+...
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g 420 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGG 420 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCC--SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCC
Confidence 7999999999999653 46679999997643 22335789999999999999999999999986543333322221
Q ss_pred -------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCce---e
Q 042958 898 -------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNW---T 967 (1075)
Q Consensus 898 -------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~---~ 967 (1075)
.....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.+....... .
T Consensus 421 ~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~ 497 (613)
T 2ozo_A 421 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARS 497 (613)
T ss_dssp BHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----------
T ss_pred cHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeecc
Confidence 1234589999999999999999999999 99999999999999999999999999998765433221 2
Q ss_pred ccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC-CCCCCCCcCcHHHH
Q 042958 968 ELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD-PRLPTPSCIVQDKL 1045 (1075)
Q Consensus 968 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1045 (1075)
...+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ ....+.. .+.+.+ ..++
T Consensus 498 ~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--------~~~~i~~~~~~~~p----~~~~ 565 (613)
T 2ozo_A 498 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--------VMAFIEQGKRMECP----PECP 565 (613)
T ss_dssp ----CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH--------HHHHHHTTCCCCCC----TTCC
T ss_pred CCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--------HHHHHHcCCCCCCC----CcCC
Confidence 2345689999999999999999999999999999998 999997543321 1111111 122222 2334
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1046 ISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1046 ~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.++.+++.+||+.||++||+++||++.|+
T Consensus 566 ~~l~~li~~cl~~dP~~RPs~~~l~~~L~ 594 (613)
T 2ozo_A 566 PELYALMSDCWIYKWEDRPDFLTVEQRMR 594 (613)
T ss_dssp HHHHHHHHHTTCSSTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 56999999999999999999999999875
No 206
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.6e-34 Score=314.52 Aligned_cols=240 Identities=24% Similarity=0.388 Sum_probs=188.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||||++...........+.+.+|++++++++||||+++++++......+ +
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-l 91 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY-L 91 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE-E
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE-E
Confidence 367888999999999999999665 68899999985422111223467899999999999999999999998755432 2
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~- 167 (284)
T 2vgo_A 92 MLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL- 167 (284)
T ss_dssp EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS-
T ss_pred EEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc-
Confidence 222211 134588999999999999999999999 9999999999999999999999999999765432
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQD 1043 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1075)
......|++.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......+. .
T Consensus 168 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~----~ 234 (284)
T 2vgo_A 168 -RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--------ETHRRIVNVDLKFPP----F 234 (284)
T ss_dssp -CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHTTCCCCCT----T
T ss_pred -ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--------HHHHHHhccccCCCC----c
Confidence 234467899999999999999999999999999999999999999743221 111222222222222 2
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1044 KLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1044 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+..+.+++.+|++.||++|||++|+++
T Consensus 235 ~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 235 LSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 2345899999999999999999999986
No 207
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=4.3e-34 Score=325.92 Aligned_cols=253 Identities=22% Similarity=0.351 Sum_probs=192.4
Q ss_pred cHHHHHHHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc-----hhHHHHHHHHHHHHhcC-CcCceee
Q 042958 806 VYEEIIRATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE-----MTFQQEFLNEVKALTEI-RHRNIVK 878 (1075)
Q Consensus 806 ~~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~-----~~~~~~~~~E~~~l~~l-~h~niv~ 878 (1075)
.........++|++.+.||+|+||.||+|... +|+.||||++....... ....+.+.+|+.+++++ +||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 164 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIIT 164 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCC
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 33444555678999999999999999999775 79999999986543211 12345788999999999 8999999
Q ss_pred EEEEeeccccchhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCce
Q 042958 879 FYGFCSHVRHSLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAH 949 (1075)
Q Consensus 879 l~~~~~~~~~~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~k 949 (1075)
+++++......+. +++... ....+++..+..++.||+.||.|||+. +|+||||||+||+++.++.+|
T Consensus 165 ~~~~~~~~~~~~l-v~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ik 240 (365)
T 2y7j_A 165 LIDSYESSSFMFL-VFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIR 240 (365)
T ss_dssp EEEEEEBSSEEEE-EECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEE
T ss_pred EEEEEeeCCEEEE-EEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEE
Confidence 9999876554322 222211 134689999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCceeccccccCccCcccccc------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh
Q 042958 950 VSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYT------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN 1023 (1075)
Q Consensus 950 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~ 1023 (1075)
|+|||++..+... .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||......
T Consensus 241 l~DfG~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-------- 311 (365)
T 2y7j_A 241 LSDFGFSCHLEPG-EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI-------- 311 (365)
T ss_dssp ECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--------
T ss_pred EEecCcccccCCC-cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH--------
Confidence 9999999877643 23345689999999998863 35788999999999999999999999643211
Q ss_pred hhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 IALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 312 ~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 312 LMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111112211111011123446899999999999999999999986
No 208
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=4.2e-35 Score=336.40 Aligned_cols=235 Identities=14% Similarity=0.130 Sum_probs=176.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHH---HHHhcCCcCceeeEE-------EE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEV---KALTEIRHRNIVKFY-------GF 882 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 882 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++...........+.+.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788889999999999999975 57999999999765444444568899999 556666899999998 55
Q ss_pred eecccc----------------chhheecCccc---------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 042958 883 CSHVRH----------------SLAMILSNNAA---------------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIV 931 (1075)
Q Consensus 883 ~~~~~~----------------~l~~~~~~~~~---------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 931 (1075)
+...+. ..+++++...+ ...+++..++.|+.||++||+|||+. +|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 228 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 228 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence 544321 01111211110 11223577888999999999999999 999
Q ss_pred EecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCccccccC-----------CCCcccchHhHHHHHH
Q 042958 932 HRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTM-----------KVTEKCDVYSFGVLAL 1000 (1075)
Q Consensus 932 H~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~s~G~vl~ 1000 (1075)
||||||+||+++.++.+||+|||+|+... .......| +.|+|||++.+. .++.++|||||||++|
T Consensus 229 HrDikp~NIll~~~~~~kL~DFG~a~~~~---~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~ 304 (377)
T 3byv_A 229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDG---ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIY 304 (377)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETT---CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHH
T ss_pred cCCCCHHHEEEcCCCCEEEEechhheecC---CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHH
Confidence 99999999999999999999999998643 23445677 999999999887 8999999999999999
Q ss_pred HHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1001 EVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1001 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
||++|+.||........ ...+.. .. . ..+..+.+++.+||+.||++|||+.|+++
T Consensus 305 elltg~~Pf~~~~~~~~--------~~~~~~-~~---~----~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 305 WIWCADLPITKDAALGG--------SEWIFR-SC---K----NIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHSSCCC------CC--------SGGGGS-SC---C----CCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHCCCCCcccccccc--------hhhhhh-hc---c----CCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 99999999964332111 111111 00 1 12235899999999999999999999986
No 209
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=2.2e-34 Score=327.92 Aligned_cols=251 Identities=22% Similarity=0.330 Sum_probs=172.9
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH---- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 888 (1075)
.++|+..+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|+++++.++||||+++++++.....
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 47899999999999999999964 579999999997643 233446788899999999999999999999865421
Q ss_pred -chhheecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 -SLAMILSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 -~l~~~~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++++++.. .....+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 107 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~ 183 (367)
T 2fst_X 107 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTA 183 (367)
T ss_dssp CCCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred CeEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence 112221111 1234689999999999999999999999 99999999999999999999999999998754
Q ss_pred CCCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh---------------h
Q 042958 961 PDSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN---------------I 1024 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~---------------~ 1024 (1075)
.. .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.............. .
T Consensus 184 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~ 260 (367)
T 2fst_X 184 DE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSE 260 (367)
T ss_dssp ----------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCH
T ss_pred cc---CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhH
Confidence 32 344678999999999877 6789999999999999999999999975432211000000 0
Q ss_pred hhhhccC--CCCCCCC--cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1025 ALDEMLD--PRLPTPS--CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1025 ~~~~~~~--~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.. +..+... .........+.+++.+|++.||++|||++|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 261 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 0000000 0001000 001122356899999999999999999999986
No 210
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=9.9e-34 Score=311.82 Aligned_cols=241 Identities=25% Similarity=0.371 Sum_probs=180.3
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|.+.+.||+|+||.||+|.. .+++.||+|++...... ...+.+.+|++++++++||||+++++++......+.+
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 98 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ--VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc--hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence 35788899999999999999966 46899999998764322 2257889999999999999999999999875543222
Q ss_pred eecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEeccccc
Q 042958 893 ILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIA 956 (1075)
Q Consensus 893 ~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla 956 (1075)
++... ....+++..+..++.|+++||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 99 -~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a 174 (285)
T 3is5_A 99 -METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174 (285)
T ss_dssp -ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCC
T ss_pred -EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecc
Confidence 22111 135689999999999999999999999 99999999999999 45678999999999
Q ss_pred cccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 957 KFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
+..... .......||+.|+|||.+. ..++.++||||+|+++|||++|+.||........ .. ......+....
T Consensus 175 ~~~~~~-~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~-----~~-~~~~~~~~~~~ 246 (285)
T 3is5_A 175 ELFKSD-EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV-----QQ-KATYKEPNYAV 246 (285)
T ss_dssp CC-----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-----HH-HHHHCCCCCCC
T ss_pred eecCCc-ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH-----Hh-hhccCCccccc
Confidence 876543 2234567899999999876 4689999999999999999999999974332110 00 01111111111
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
. ....+.++.+++.+||+.||++|||++|+++
T Consensus 247 ~---~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 247 E---CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp -----CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred c---cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1 0112346889999999999999999999986
No 211
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=4.3e-34 Score=326.44 Aligned_cols=253 Identities=22% Similarity=0.279 Sum_probs=187.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----H 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~ 888 (1075)
..+|++.+.||+|+||.||+|... +++.||||++... ......+.+.+|++++++++||||+++++++.... .
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF--EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT--TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc--cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 468999999999999999999654 7889999998743 23344578999999999999999999999986543 1
Q ss_pred chhheecCcc-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 889 SLAMILSNNA-------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 889 ~l~~~~~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
...++++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 104 ~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 180 (364)
T 3qyz_A 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADP 180 (364)
T ss_dssp CEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred eEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence 1222222211 234689999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCc---eeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh---------------
Q 042958 962 DSSN---WTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL--------------- 1022 (1075)
Q Consensus 962 ~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~--------------- 1022 (1075)
.... .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............
T Consensus 181 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (364)
T 3qyz_A 181 DHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCII 260 (364)
T ss_dssp GGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCC
T ss_pred CCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhh
Confidence 3221 244579999999998654 458999999999999999999999997543321110000
Q ss_pred ----hhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1023 ----NIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1023 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......................+.++.+++.+|++.||++|||++|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 261 NLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000000000000001122456899999999999999999999986
No 212
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=314.99 Aligned_cols=241 Identities=26% Similarity=0.395 Sum_probs=185.9
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
..++|++.+.||+|+||.||+|... +|+.||||++..... .+++.+|+.++++++||||+++++++......+.
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD-----LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC-----CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH-----HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 4578999999999999999999665 699999999875321 3678899999999999999999999876554322
Q ss_pred heecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 892 MILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 892 ~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+++... ....+++.++..++.|++.||.|||+. +++||||||+||+++.++.+||+|||.+.....
T Consensus 102 -v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 177 (314)
T 3com_A 102 -VMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTD 177 (314)
T ss_dssp -EEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBT
T ss_pred -EeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhh
Confidence 222211 245689999999999999999999999 999999999999999999999999999987765
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.........|++.|+|||.+.+..++.++||||+|+++|||++|+.||....... ..........+.... .
T Consensus 178 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~----~ 248 (314)
T 3com_A 178 TMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR-----AIFMIPTNPPPTFRK----P 248 (314)
T ss_dssp TBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HHHHHHHSCCCCCSS----G
T ss_pred hccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH-----HHHHHhcCCCcccCC----c
Confidence 5444455679999999999999999999999999999999999999997433211 011111111112211 2
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+..+.+++.+||+.||++|||++|+++
T Consensus 249 ~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 249 ELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp GGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 223456999999999999999999999976
No 213
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-33 Score=318.22 Aligned_cols=242 Identities=26% Similarity=0.448 Sum_probs=181.3
Q ss_pred cCCCCCceecccCceEEEEEEECC-----CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELAS-----GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~-----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 889 (1075)
.+|+..+.||+|+||.||+|.... +..||||++.... .......+.+|++++++++||||+++++++......
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 466677899999999999996542 2469999987542 334456899999999999999999999999765443
Q ss_pred hhheecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 890 LAMILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 890 l~~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
+.+ ++.. .....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 122 ~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 122 MII-TEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEE-EECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEE-EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 222 2211 1235689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCC-CC
Q 042958 960 KPDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDP-RL 1034 (1075)
Q Consensus 960 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 1034 (1075)
...... .....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+... +.
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--------~~~~~~~~~~~~ 269 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--------EVMKAINDGFRL 269 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--------HHHHHHHTTCCC
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--------HHHHHHHCCCcC
Confidence 543221 122346788999999998899999999999999999999 99998643221 111122221 22
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+.+. ..+..+.+++.+||+.||++||+++|+++.|+
T Consensus 270 ~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 305 (333)
T 1mqb_A 270 PTPM----DCPSAIYQLMMQCWQQERARRPKFADIVSILD 305 (333)
T ss_dssp CCCT----TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred CCcc----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 2222 23446899999999999999999999999874
No 214
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.2e-33 Score=320.31 Aligned_cols=255 Identities=22% Similarity=0.341 Sum_probs=190.5
Q ss_pred HHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhc--CCcCceeeEEEEeecc
Q 042958 809 EIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTE--IRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 809 e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~ 886 (1075)
......++|++.+.||+|+||.||+|+.. |+.||||++... ..+.+.+|++++.. ++||||+++++++...
T Consensus 36 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~ 108 (342)
T 1b6c_B 36 VQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKD 108 (342)
T ss_dssp HHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred ecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch------hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence 33455678999999999999999999875 999999998532 24567788888887 7999999999999776
Q ss_pred cc---chhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEecCCCCCeeeCCCCC
Q 042958 887 RH---SLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMH--------NDCFPPIVHRDISSKNVLLDFDNE 947 (1075)
Q Consensus 887 ~~---~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nill~~~~~ 947 (1075)
.. .+.++++... ....+++.++++++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 109 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~ 185 (342)
T 1b6c_B 109 NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGT 185 (342)
T ss_dssp CSSCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSC
T ss_pred CCccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCC
Confidence 52 2223322221 1345889999999999999999999 67 9999999999999999999
Q ss_pred ceEeccccccccCCCCCc----eeccccccCccCccccccC------CCCcccchHhHHHHHHHHHhC----------CC
Q 042958 948 AHVSDFGIAKFLKPDSSN----WTELAGTYGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG----------KH 1007 (1075)
Q Consensus 948 ~kl~DfGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~~ 1007 (1075)
+||+|||+++........ .....||+.|+|||++.+. .++.++||||||+++|||++| +.
T Consensus 186 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~ 265 (342)
T 1b6c_B 186 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 265 (342)
T ss_dssp EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccccc
Confidence 999999999876654332 2345799999999998765 234689999999999999999 67
Q ss_pred CCCccCccccchhhhh-hhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1008 PRDFISSMSSSSLNLN-IALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1008 p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
||.............. ........+.++.. ....+....+.+++.+||+.||++|||++||++.|+
T Consensus 266 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~ 332 (342)
T 1b6c_B 266 PYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 332 (342)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHH
T ss_pred CccccCcCcccHHHHHHHHHHHHhCCCCccc-ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHH
Confidence 7754322111111111 11111112222211 112356678999999999999999999999999875
No 215
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=326.15 Aligned_cols=254 Identities=18% Similarity=0.236 Sum_probs=181.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchh--------HHHHHHHHHHHHhcCCcCceeeEEE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMT--------FQQEFLNEVKALTEIRHRNIVKFYG 881 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l~~ 881 (1075)
.++|++.+.||+|+||.||+|... ++..||||+.......... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367889999999999999999765 5788999998754321100 1124678889999999999999999
Q ss_pred Eeecc---ccchhheecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC--Cc
Q 042958 882 FCSHV---RHSLAMILSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN--EA 948 (1075)
Q Consensus 882 ~~~~~---~~~l~~~~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~--~~ 948 (1075)
++... .....++++.. .....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++ .+
T Consensus 116 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 192 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQV 192 (345)
T ss_dssp EEEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSE
T ss_pred ccccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcE
Confidence 98762 22222222221 1123689999999999999999999999 999999999999999887 99
Q ss_pred eEeccccccccCCCCC-------ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh
Q 042958 949 HVSDFGIAKFLKPDSS-------NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN 1021 (1075)
Q Consensus 949 kl~DfGla~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~ 1021 (1075)
||+|||+++.+..... ......||+.|+|||++.+..++.++||||||+++|||++|+.||............
T Consensus 193 kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~ 272 (345)
T 2v62_A 193 YLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQT 272 (345)
T ss_dssp EECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHH
T ss_pred EEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHH
Confidence 9999999987643221 123457999999999999999999999999999999999999999642211111100
Q ss_pred hhhhhhhccCCCCCCCC---cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1022 LNIALDEMLDPRLPTPS---CIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...... ...+... ......+.++.+++.+||+.||++|||++||++.|+
T Consensus 273 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 324 (345)
T 2v62_A 273 AKTNLL----DELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILN 324 (345)
T ss_dssp HHHHHH----HTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHC
T ss_pred HHHhhc----ccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHh
Confidence 000000 0111000 000023346999999999999999999999999886
No 216
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=3.8e-34 Score=342.60 Aligned_cols=243 Identities=24% Similarity=0.408 Sum_probs=191.0
Q ss_pred HhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..++|++.+.||+|+||.||+|.+.++..||||+++.... ..++|.+|++++++++||||+++++++.+....+++
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~ 340 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVT 340 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEE
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEee
Confidence 4567888899999999999999998888899999975432 246899999999999999999999999764433332
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
.+.... ....+++.++++|+.||++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 417 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417 (535)
T ss_dssp CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH
T ss_pred ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc
Confidence 222111 124588999999999999999999999 99999999999999999999999999998765321
Q ss_pred C-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC-CCCCCCCcC
Q 042958 964 S-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD-PRLPTPSCI 1040 (1075)
Q Consensus 964 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1040 (1075)
. ......++..|+|||++.+..++.++||||||+++|||++ |+.||......+ ....+.. .+.+.+.
T Consensus 418 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--------~~~~i~~~~~~~~~~-- 487 (535)
T 2h8h_A 418 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--------VLDQVERGYRMPCPP-- 487 (535)
T ss_dssp HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--------HHHHHHTTCCCCCCT--
T ss_pred eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--------HHHHHHcCCCCCCCC--
Confidence 1 1123456789999999998899999999999999999999 999987433211 1111111 1222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.++..+.+++.+||+.||++|||++||++.|+
T Consensus 488 --~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~ 519 (535)
T 2h8h_A 488 --ECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 519 (535)
T ss_dssp --TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 23446899999999999999999999999875
No 217
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3.3e-34 Score=339.40 Aligned_cols=245 Identities=22% Similarity=0.272 Sum_probs=189.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|+..+.||+|+||.||+|... +|+.||||++...........+.+.+|+++++.++|||||++++++.+.+..+ +
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~-l 261 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC-L 261 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-E
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE-E
Confidence 467888899999999999999764 79999999986432111223467889999999999999999999987755432 2
Q ss_pred eecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 893 ILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 893 ~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+++... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.+..
T Consensus 262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 222211 123489999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.......... .....+.......+
T Consensus 339 ~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~----~i~~~i~~~~~~~p---- 409 (576)
T 2acx_A 339 GQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE----EVERLVKEVPEEYS---- 409 (576)
T ss_dssp TC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHH----HHHHHHHHCCCCCC----
T ss_pred Cc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHH----HHHHHhhcccccCC----
Confidence 32 3445689999999999999899999999999999999999999997543211111 11111111111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCC-----CHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRP-----TMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1071 (1075)
...+.++.+++.+||++||++|| +++||++
T Consensus 410 ~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 410 ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 22344699999999999999999 7888875
No 218
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=333.00 Aligned_cols=253 Identities=21% Similarity=0.218 Sum_probs=189.5
Q ss_pred HHHHHHHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeec
Q 042958 807 YEEIIRATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSH 885 (1075)
Q Consensus 807 ~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 885 (1075)
+.+.....++|++.+.||+|+||.||+|+.+ +|+.||||++.+.........+.+.+|+.++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3445556789999999999999999999764 799999999864211111223458899999999999999999999987
Q ss_pred cccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccc
Q 042958 886 VRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGI 955 (1075)
Q Consensus 886 ~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGl 955 (1075)
.+..+ ++++... .+..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 133 ~~~~~-lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGl 208 (412)
T 2vd5_A 133 ENYLY-LVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGS 208 (412)
T ss_dssp SSEEE-EEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CCEEE-EEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechh
Confidence 65432 2222211 134689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCc-eeccccccCccCccccc-------cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 956 AKFLKPDSSN-WTELAGTYGYVAPELAY-------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 956 a~~~~~~~~~-~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
++........ ....+||+.|+|||++. +..++.++||||+||++|||++|+.||......... .....
T Consensus 209 a~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~----~~i~~ 284 (412)
T 2vd5_A 209 CLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETY----GKIVH 284 (412)
T ss_dssp CEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHT
T ss_pred heeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHH----HHHHh
Confidence 9877654332 23468999999999987 356899999999999999999999999743321110 01111
Q ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCC---CCHHHHHh
Q 042958 1028 EMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESR---PTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Ps~~evl~ 1071 (1075)
......++. .....+.++.+++.+|+. +|++| |+++|+++
T Consensus 285 ~~~~~~~p~---~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 285 YKEHLSLPL---VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHHHCCCC-------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred cccCcCCCc---cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 000011111 011233468999999999 99998 58999875
No 219
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.6e-34 Score=321.88 Aligned_cols=250 Identities=19% Similarity=0.271 Sum_probs=187.4
Q ss_pred HHHHHhcCCCCC-ceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeec
Q 042958 809 EIIRATNDFDDE-HCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSH 885 (1075)
Q Consensus 809 e~~~~~~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 885 (1075)
......+.|.+. +.||+|+||.||+|... +|+.||||++....... ....++.+|+.+++.+ +||||+++++++..
T Consensus 22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~ 100 (327)
T 3lm5_A 22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ-DCRAEILHEIAVLELAKSCPRVINLHEVYEN 100 (327)
T ss_dssp CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE-ECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHHhccCCCCEEEEEEEEEe
Confidence 344555677776 88999999999999665 69999999987643322 2357889999999999 56999999999987
Q ss_pred cccchhhee-cCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC---CCCceEec
Q 042958 886 VRHSLAMIL-SNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF---DNEAHVSD 952 (1075)
Q Consensus 886 ~~~~l~~~~-~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~D 952 (1075)
....+.++. ... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|
T Consensus 101 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~D 177 (327)
T 3lm5_A 101 TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVD 177 (327)
T ss_dssp SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECC
T ss_pred CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEee
Confidence 654322221 111 1235689999999999999999999999 9999999999999998 78999999
Q ss_pred cccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCC
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDP 1032 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1075)
||+++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||....... ....+...
T Consensus 178 fg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--------~~~~i~~~ 248 (327)
T 3lm5_A 178 FGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE--------TYLNISQV 248 (327)
T ss_dssp GGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHT
T ss_pred CccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH--------HHHHHHhc
Confidence 99998765432 2344679999999999999999999999999999999999999996433211 11111111
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1033 RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1033 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+.......+..+.+++.+||+.||++|||++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 249 NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 111111122234456899999999999999999999986
No 220
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.5e-34 Score=320.72 Aligned_cols=251 Identities=24% Similarity=0.345 Sum_probs=191.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-----CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-----ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++...+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC---CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence 46788899999999999999974 46889999998753 33445779999999999999999999998864332
Q ss_pred -chhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccc
Q 042958 889 -SLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAK 957 (1075)
Q Consensus 889 -~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~ 957 (1075)
.+.++++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 175 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAK 175 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred ceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccce
Confidence 2223322221 124589999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCc---eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcccc-------chhhhhhhhh
Q 042958 958 FLKPDSSN---WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS-------SSLNLNIALD 1027 (1075)
Q Consensus 958 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~-------~~~~~~~~~~ 1027 (1075)
........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||........ ..........
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (327)
T 3lxl_A 176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLE 255 (327)
T ss_dssp ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHH
T ss_pred ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHH
Confidence 77654332 2234578889999999998899999999999999999999999863221100 0000011111
Q ss_pred hccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1028 EMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1028 ~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..... ..+. ....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 256 ~~~~~~~~~~----~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 299 (327)
T 3lxl_A 256 LLEEGQRLPA----PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLD 299 (327)
T ss_dssp HHHTTCCCCC----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HhhcccCCCC----CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111 1111 2233456999999999999999999999999875
No 221
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=4.1e-34 Score=339.51 Aligned_cols=243 Identities=23% Similarity=0.319 Sum_probs=187.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++....... ...+.+.+|++++++++||||+++++++......+.+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc-hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 467899999999999999999664 79999999985432111 1246789999999999999999999999876554322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC---CCCCceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD---FDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfGla~~~~ 960 (1075)
+ +... ....+++..+..++.||+.||+|||+. +|+||||||+||+++ .++.+||+|||+++.+.
T Consensus 100 ~-e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 G-ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp E-CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred E-EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 2 2111 135689999999999999999999999 999999999999995 45679999999998765
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+.......+...
T Consensus 176 ~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~~~ 245 (486)
T 3mwu_A 176 QN-TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--------DILKRVETGKYAFDLPQ 245 (486)
T ss_dssp CC-----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCSCSGG
T ss_pred CC-CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCCcc
Confidence 43 33445679999999999876 5999999999999999999999999643221 11222222222222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+||+.||++|||+.|+++
T Consensus 246 ~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 246 WRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp GGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 3344567999999999999999999999986
No 222
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.3e-33 Score=309.53 Aligned_cols=244 Identities=25% Similarity=0.358 Sum_probs=188.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||||++..... ....+.+.+|+.+++.++||||+++++++.+....+.+
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC--TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc--hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 467889999999999999999765 799999999865422 23457899999999999999999999998775543222
Q ss_pred e-ecC-------ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC-
Q 042958 893 I-LSN-------NAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS- 963 (1075)
Q Consensus 893 ~-~~~-------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~- 963 (1075)
+ ... ......+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+..+....
T Consensus 84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 84 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 1 111 11234588999999999999999999999 99999999999999999999999999998654332
Q ss_pred -CceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 964 -SNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 964 -~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
.......|++.|+|||.+.+..+ +.++||||+|+++|||++|+.||+........ ...........+ ..
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-------~~~~~~~~~~~~--~~ 231 (276)
T 2yex_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-------YSDWKEKKTYLN--PW 231 (276)
T ss_dssp ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH-------HHHHHTTCTTST--TG
T ss_pred hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH-------HHHhhhcccccC--ch
Confidence 12344678999999999987765 77899999999999999999999754321110 111111111100 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+..+.+++.+||+.||++|||++|+++
T Consensus 232 ~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 232 KKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 233456899999999999999999999986
No 223
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=4.2e-34 Score=347.63 Aligned_cols=239 Identities=26% Similarity=0.405 Sum_probs=183.0
Q ss_pred ceecccCceEEEEEEEC---CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhheecCc
Q 042958 821 HCIGKGGQGSVYKAELA---SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMILSNN 897 (1075)
Q Consensus 821 ~~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~~~~~ 897 (1075)
+.||+|+||.||+|.+. +++.||||+++... ......+++.+|++++++++|||||+++++|......+.+.+...
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG-GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCC
Confidence 47999999999999553 46789999987543 223346789999999999999999999999976554333332221
Q ss_pred -------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc---ee
Q 042958 898 -------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN---WT 967 (1075)
Q Consensus 898 -------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~---~~ 967 (1075)
.....+++.++..|+.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.+...... ..
T Consensus 454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~ 530 (635)
T 4fl3_A 454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 530 (635)
T ss_dssp EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccccc
Confidence 1245689999999999999999999999 9999999999999999999999999999877654322 22
Q ss_pred ccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHH
Q 042958 968 ELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLI 1046 (1075)
Q Consensus 968 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1075)
...+|+.|+|||++.+..++.++|||||||++|||++ |+.||....... ........ .....+ ..++.
T Consensus 531 ~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-----~~~~i~~~--~~~~~p----~~~~~ 599 (635)
T 4fl3_A 531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-----VTAMLEKG--ERMGCP----AGCPR 599 (635)
T ss_dssp ----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-----HHHHHHTT--CCCCCC----TTCCH
T ss_pred CCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHcC--CCCCCC----CCCCH
Confidence 3456789999999999999999999999999999998 999997433211 11111111 112222 22345
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1047 SIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1047 ~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
++.+++.+||+.||++||++++|++.|+
T Consensus 600 ~l~~li~~cl~~dP~~RPs~~~l~~~L~ 627 (635)
T 4fl3_A 600 EMYDLMNLCWTYDVENRPGFAAVELRLR 627 (635)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 6999999999999999999999999875
No 224
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=9.2e-34 Score=324.29 Aligned_cols=251 Identities=20% Similarity=0.305 Sum_probs=185.2
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS--- 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 889 (1075)
.++|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++.++||||+++++++......
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc-chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 46888899999999999999965 4799999999976543 334467889999999999999999999999765542
Q ss_pred --hhheecCcc------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 890 --LAMILSNNA------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 890 --l~~~~~~~~------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+.++++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 196 (371)
T 4exu_A 120 YDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA 196 (371)
T ss_dssp CCCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC-----
T ss_pred eeEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCccccccc
Confidence 122222111 134589999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh------------------
Q 042958 962 DSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL------------------ 1022 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~------------------ 1022 (1075)
. .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............
T Consensus 197 ~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (371)
T 4exu_A 197 E---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKA 273 (371)
T ss_dssp ------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHH
T ss_pred C---cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhh
Confidence 2 344678999999999887 678999999999999999999999997543211100000
Q ss_pred -hhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1023 -NIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1023 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......................+..+.+++.+|++.||++|||++|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 274 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 0000000000000000011123457999999999999999999999986
No 225
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=331.89 Aligned_cols=190 Identities=20% Similarity=0.336 Sum_probs=140.8
Q ss_pred cCCCC-CceecccCceEEEEEEEC---CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-cc
Q 042958 815 NDFDD-EHCIGKGGQGSVYKAELA---SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR-HS 889 (1075)
Q Consensus 815 ~~~~~-~~~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~ 889 (1075)
+.|++ .++||+|+||.||+|... +++.||||++..... ...+.+|+.++++++||||+++++++.... ..
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 44555 458999999999999765 578999999975422 246789999999999999999999985422 22
Q ss_pred hhheecCcc-----------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee----CCCCCc
Q 042958 890 LAMILSNNA-----------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL----DFDNEA 948 (1075)
Q Consensus 890 l~~~~~~~~-----------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~ 948 (1075)
++++++... ....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+
T Consensus 95 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~ 171 (405)
T 3rgf_A 95 VWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRV 171 (405)
T ss_dssp EEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCE
T ss_pred EEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcE
Confidence 222222211 112488999999999999999999999 99999999999999 677899
Q ss_pred eEeccccccccCCCC---CceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCcc
Q 042958 949 HVSDFGIAKFLKPDS---SNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFI 1012 (1075)
Q Consensus 949 kl~DfGla~~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~ 1012 (1075)
||+|||+|+.+.... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 172 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 172 KIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp EECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 999999998765432 223456789999999998874 5899999999999999999999999643
No 226
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.9e-34 Score=326.07 Aligned_cols=250 Identities=22% Similarity=0.253 Sum_probs=181.6
Q ss_pred HHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH- 888 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 888 (1075)
....++|++.+.||+|+||.||+|.. .+|+.||||++..... ...+|+++++.++||||+++++++.....
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 75 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-------YKNRELDIMKVLDHVNIIKLVDYFYTTGDE 75 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHTTCCCTTBCCEEEEEEEC---
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-------hHHHHHHHHHHcCCCCccchhheeeecCcc
Confidence 34567899999999999999999965 5799999999865422 22379999999999999999999854321
Q ss_pred ------------------------------------chhheecCcc------------ccCCCCHHHHHHHHHHHHHHHH
Q 042958 889 ------------------------------------SLAMILSNNA------------AAKDLGWTRRMNVIKGISDALS 920 (1075)
Q Consensus 889 ------------------------------------~l~~~~~~~~------------~~~~l~~~~~~~i~~~i~~~L~ 920 (1075)
.+.++++... ....+++..+..++.||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp ----------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 1222222221 2356899999999999999999
Q ss_pred HHHhCCCCCeEEecCCCCCeeeC-CCCCceEeccccccccCCCCCceeccccccCccCccccccC-CCCcccchHhHHHH
Q 042958 921 YMHNDCFPPIVHRDISSKNVLLD-FDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVL 998 (1075)
Q Consensus 921 ~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~v 998 (1075)
|||+. +|+||||||+||+++ .++.+||+|||+|+.+.... ......||+.|+|||.+.+. .++.++||||+||+
T Consensus 156 ~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 156 FIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE-PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp HHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS-CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred HHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC-CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 99999 999999999999998 68899999999998765443 33456789999999988765 48999999999999
Q ss_pred HHHHHhCCCCCCccCccccchhhhh-------hhhh----hccCCCCCCCCc------CcHHHHHHHHHHHHHccCCCCC
Q 042958 999 ALEVIKGKHPRDFISSMSSSSLNLN-------IALD----EMLDPRLPTPSC------IVQDKLISIVEVAISCLDENPE 1061 (1075)
Q Consensus 999 l~elltg~~p~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~ 1061 (1075)
+|||++|+.||......+....... .... ......++.... .....+..+.+++.+||+.||+
T Consensus 232 l~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 311 (383)
T 3eb0_A 232 FGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPD 311 (383)
T ss_dssp HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGG
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChh
Confidence 9999999999975432211000000 0000 000011111000 1112345689999999999999
Q ss_pred CCCCHHHHHh
Q 042958 1062 SRPTMPKVSQ 1071 (1075)
Q Consensus 1062 ~RPs~~evl~ 1071 (1075)
+|||+.|+++
T Consensus 312 ~R~t~~e~l~ 321 (383)
T 3eb0_A 312 LRINPYEAMA 321 (383)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHhc
Confidence 9999999985
No 227
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=310.11 Aligned_cols=241 Identities=23% Similarity=0.343 Sum_probs=180.8
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|.....||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+..+.+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv- 97 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD---SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIF- 97 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC---C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE-
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc---hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEE-
Confidence 3455566999999999999965 578999999987542 23357799999999999999999999999765543222
Q ss_pred ecCc------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC-CCCceEeccccccccC
Q 042958 894 LSNN------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF-DNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 894 ~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~DfGla~~~~ 960 (1075)
++.. .....+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||.++...
T Consensus 98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~ 174 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLA 174 (295)
T ss_dssp EECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESC
T ss_pred EEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccC
Confidence 2211 1123467888999999999999999999 9999999999999987 8999999999998776
Q ss_pred CCCCceeccccccCccCccccccCC--CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMK--VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
..........|++.|+|||++.+.. ++.++||||||+++|||++|+.||........ ...........+..+
T Consensus 175 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~--- 248 (295)
T 2clq_A 175 GINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQA---AMFKVGMFKVHPEIP--- 248 (295)
T ss_dssp C-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHH---HHHHHHHHCCCCCCC---
T ss_pred CCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhH---HHHhhcccccccccc---
Confidence 5444445567999999999987643 78999999999999999999999964322110 000000111111221
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+.++.+++.+||+.||++|||++|+++
T Consensus 249 ---~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 249 ---ESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ---TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ---ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 223346899999999999999999999985
No 228
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=313.55 Aligned_cols=243 Identities=20% Similarity=0.280 Sum_probs=186.0
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCC-chhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-cch
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPG-EMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR-HSL 890 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~l 890 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++...... .....+.+.+|++++++++||||+++++++.... ...
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 47899999999999999999966 47899999998643111 1123578999999999999999999999985432 222
Q ss_pred hheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 891 AMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 891 ~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
.++++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+....
T Consensus 84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~ 160 (305)
T 2wtk_C 84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALH 160 (305)
T ss_dssp EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccccC
Confidence 22222211 235689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCC--CceeccccccCccCccccccCC--CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCC
Q 042958 961 PDS--SNWTELAGTYGYVAPELAYTMK--VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPT 1036 (1075)
Q Consensus 961 ~~~--~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1075)
... .......||+.|+|||++.+.. ++.++||||+|+++|||++|+.||...... .....+.......
T Consensus 161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------~~~~~i~~~~~~~ 232 (305)
T 2wtk_C 161 PFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--------KLFENIGKGSYAI 232 (305)
T ss_dssp TTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--------HHHHHHHHCCCCC
T ss_pred ccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--------HHHHHHhcCCCCC
Confidence 432 2234567899999999987654 378999999999999999999999743211 1111121222222
Q ss_pred CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1037 PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1037 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+. ..+..+.+++.+||+.||++|||++|+++
T Consensus 233 ~~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 233 PG----DCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp CS----SSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CC----ccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 22 22345899999999999999999999986
No 229
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=321.01 Aligned_cols=254 Identities=25% Similarity=0.381 Sum_probs=181.9
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHH--HhcCCcCceeeEEEEeecc----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKA--LTEIRHRNIVKFYGFCSHV----R 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~~----~ 887 (1075)
.++|++.+.||+|+||.||+|+. +++.||||++... ....+..|.++ +..++||||+++++++... .
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 84 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR 84 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc------chhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence 46888999999999999999977 5899999998632 12344444444 5568999999999865321 1
Q ss_pred cchhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEEecCCCCCeeeCCCCCceEecc
Q 042958 888 HSLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDC------FPPIVHRDISSKNVLLDFDNEAHVSDF 953 (1075)
Q Consensus 888 ~~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivH~Dlk~~Nill~~~~~~kl~Df 953 (1075)
..+.++++... .....++..+.+++.||++||+|||+.+ .++|+||||||+||+++.++.+||+||
T Consensus 85 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DF 164 (336)
T 3g2f_A 85 MEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF 164 (336)
T ss_dssp EEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCC
T ss_pred ceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeec
Confidence 22223333221 1234588999999999999999999873 238999999999999999999999999
Q ss_pred ccccccCCCC--------CceeccccccCccCcccccc-------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccc
Q 042958 954 GIAKFLKPDS--------SNWTELAGTYGYVAPELAYT-------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSS 1018 (1075)
Q Consensus 954 Gla~~~~~~~--------~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~ 1018 (1075)
|+++.+.... .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||.........
T Consensus 165 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~ 244 (336)
T 3g2f_A 165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEY 244 (336)
T ss_dssp TTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCC
T ss_pred cceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHH
Confidence 9998765322 11234579999999999886 45678899999999999999998776432221111
Q ss_pred hhhh--------------hhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1019 SLNL--------------NIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1019 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.... .........+.++.........+..+.+++.+||+.||++|||++||++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~ 314 (336)
T 3g2f_A 245 QMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMA 314 (336)
T ss_dssp CCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHH
Confidence 0000 0001111122333332333456778999999999999999999999999875
No 230
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=8.1e-34 Score=315.82 Aligned_cols=241 Identities=22% Similarity=0.318 Sum_probs=185.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|.+.+.||+|+||.||+|+.. +|+.||+|++..... ...+.+.+|+.++++++||||+++++++......+.+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 467888999999999999999664 799999999875422 2245788999999999999999999999776543222
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla~~~~ 960 (1075)
++... ....+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 85 -~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 85 -MQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp -ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred -EEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 22211 134578999999999999999999999 99999999999999 788899999999997644
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+.......+...
T Consensus 161 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~i~~~~~~~~~~~ 230 (304)
T 2jam_A 161 NG--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--------KLFEKIKEGYYEFESPF 230 (304)
T ss_dssp CB--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--------HHHHHHHHCCCCCCTTT
T ss_pred CC--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCccc
Confidence 32 233456899999999999999999999999999999999999998643221 11111111111111112
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+|++.||++|||++|+++
T Consensus 231 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 231 WDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 2234456999999999999999999999986
No 231
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=7.1e-34 Score=333.32 Aligned_cols=248 Identities=18% Similarity=0.275 Sum_probs=184.4
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc-eeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN-IVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~l~ 891 (1075)
.++|++.++||+|+||.||+|.. .+++.||||++...... +++..|+++++.++|++ +..+..++..... .+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~-~~ 79 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-----PQLLYESKIYRILQGGTGIPNVRWFGVEGDY-NV 79 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTE-EE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCE-EE
Confidence 46899999999999999999965 57999999987654322 35788999999998755 4444444443333 22
Q ss_pred heecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee---CCCCCceEecccccccc
Q 042958 892 MILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL---DFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 892 ~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfGla~~~ 959 (1075)
++++... ....+++.+++.|+.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+++.+
T Consensus 80 lvme~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~ 156 (483)
T 3sv0_A 80 LVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKY 156 (483)
T ss_dssp EEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred EEEECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceec
Confidence 2222221 145689999999999999999999999 99999999999999 58899999999999877
Q ss_pred CCCCCc-------eeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCC
Q 042958 960 KPDSSN-------WTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDP 1032 (1075)
Q Consensus 960 ~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1075)
...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||............... .......
T Consensus 157 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i-~~~~~~~ 235 (483)
T 3sv0_A 157 RDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKI-SEKKVAT 235 (483)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHH-HHHHHHS
T ss_pred cCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHH-hhccccc
Confidence 654321 22567999999999999999999999999999999999999999864432211111110 0000000
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1033 RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1033 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
... ......+.++.+++..||+.||++||++++|++.|+
T Consensus 236 ~~~---~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~ 274 (483)
T 3sv0_A 236 SIE---ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFR 274 (483)
T ss_dssp CHH---HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred cHH---HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 000 000112346999999999999999999999999874
No 232
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=6.7e-34 Score=314.27 Aligned_cols=245 Identities=23% Similarity=0.358 Sum_probs=173.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.++...++.++||||+++++++...+..+.+
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN-SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C-HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC-cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 46788999999999999999966 5799999999875432 223334455666668889999999999999876543322
Q ss_pred e-ecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 893 I-LSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 893 ~-~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+ +... .....+++..+..++.|++.|++|||+.+ +|+||||||+||+++.++.+||+|||+++....
T Consensus 85 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 85 MELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred EehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 2 1111 12356899999999999999999999852 899999999999999999999999999987654
Q ss_pred CCCceeccccccCccCcccc----ccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 962 DSSNWTELAGTYGYVAPELA----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
.. ......||+.|+|||++ .+..++.++||||+|+++|||++|+.||+...... ...........+..
T Consensus 163 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------~~~~~~~~~~~~~~ 234 (290)
T 3fme_A 163 DV-AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF-------QQLKQVVEEPSPQL 234 (290)
T ss_dssp --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH-------HHHHHHHHSCCCCC
T ss_pred cc-cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchH-------HHHHHHhccCCCCc
Confidence 32 23345799999999996 56678999999999999999999999997422210 01111111111111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+.++.+++.+||+.||++|||++|+++
T Consensus 235 --~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 235 --PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp --CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --ccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 11123446899999999999999999999986
No 233
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.4e-34 Score=328.63 Aligned_cols=263 Identities=20% Similarity=0.260 Sum_probs=187.7
Q ss_pred ccHHHHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCC--------chhHHHHHHHHHHHHhcCCcCce
Q 042958 805 IVYEEIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPG--------EMTFQQEFLNEVKALTEIRHRNI 876 (1075)
Q Consensus 805 ~~~~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~--------~~~~~~~~~~E~~~l~~l~h~ni 876 (1075)
....++....++|++.+.||+|+||.||+|...+|+.||||++...... .....+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 3456778889999999999999999999998888999999998653322 12234789999999999999999
Q ss_pred eeEEEEeecccc----chhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC
Q 042958 877 VKFYGFCSHVRH----SLAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD 943 (1075)
Q Consensus 877 v~l~~~~~~~~~----~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~ 943 (1075)
+++++++..... .+.++++.. .....+++..+..++.||+.||+|||+. +|+||||||+||+++
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLA 168 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEC
T ss_pred cceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEc
Confidence 999999854321 222222221 1234689999999999999999999999 999999999999999
Q ss_pred CCCCceEeccccccccCCCCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh
Q 042958 944 FDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL 1022 (1075)
Q Consensus 944 ~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~ 1022 (1075)
.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............
T Consensus 169 ~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~ 247 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTAD-ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIV 247 (362)
T ss_dssp TTCCEEECCTTC----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred CCCCEEEEecCcccccccc-cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 9999999999999865433 23344678999999998876 678999999999999999999999997533211000000
Q ss_pred ---------------hhhhhhccCCCCCC-CC----cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1023 ---------------NIALDEMLDPRLPT-PS----CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1023 ---------------~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.............. +. .........+.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 248 EVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 00000111111100 00 011122456899999999999999999999986
No 234
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=9.6e-34 Score=317.38 Aligned_cols=246 Identities=22% Similarity=0.350 Sum_probs=184.4
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc---cc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR---HS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~---~~ 889 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++.... ..
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 46799999999999999999966 57999999988642 3345678999999999999999999999986321 12
Q ss_pred hhheecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccc
Q 042958 890 LAMILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIA 956 (1075)
Q Consensus 890 l~~~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla 956 (1075)
..++++... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 222222111 245689999999999999999999999 9999999999999999999999999998
Q ss_pred cccCCCCCc---------eeccccccCccCccccccCC---CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh
Q 042958 957 KFLKPDSSN---------WTELAGTYGYVAPELAYTMK---VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI 1024 (1075)
Q Consensus 957 ~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~ 1024 (1075)
......... .....||+.|+|||.+.+.. ++.++||||||+++|||++|+.||+........ ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~---~~~ 258 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS---VAL 258 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC---HHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch---hhH
Confidence 765421111 12345799999999987554 688999999999999999999998632111100 000
Q ss_pred hhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1025 ALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.... ....+.. ...+..+.+++.+||+.||.+|||++|+++.|+
T Consensus 259 ~~~~--~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~ 302 (317)
T 2buj_A 259 AVQN--QLSIPQS----PRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLE 302 (317)
T ss_dssp HHHC--C--CCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred Hhhc--cCCCCcc----ccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhh
Confidence 1111 1112221 123346999999999999999999999999874
No 235
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.7e-33 Score=312.51 Aligned_cols=252 Identities=21% Similarity=0.293 Sum_probs=185.5
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|+..+.||+|+||.||+|... +|+.||||++...... ....+.+.+|++++++++||||+++++++...+..+.+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv- 80 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV- 80 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE-
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccc-hhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEE-
Confidence 57888999999999999999765 7999999998654322 22236788999999999999999999999876543222
Q ss_pred ecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 894 LSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 894 ~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++.. .....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 81 ~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 81 FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp EECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred EEcccCCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 2211 1124578999999999999999999999 99999999999999999999999999998776544
Q ss_pred CceeccccccCccCccccccCC-CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh----------hhhh--cc
Q 042958 964 SNWTELAGTYGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI----------ALDE--ML 1030 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~----------~~~~--~~ 1030 (1075)
.......+|+.|+|||.+.+.. ++.++||||+|+++|||++|+.||............... .... ..
T Consensus 158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (299)
T 2r3i_A 158 RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 237 (299)
T ss_dssp BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCccc
Confidence 4445567899999999988765 789999999999999999999999754321110000000 0000 00
Q ss_pred CCCCCCCCc-----CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1031 DPRLPTPSC-----IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1031 ~~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+.++.... .....+.++.+++.+|++.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 238 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred chhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 001110000 00123356899999999999999999999986
No 236
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.9e-34 Score=317.92 Aligned_cols=251 Identities=18% Similarity=0.305 Sum_probs=181.7
Q ss_pred hcCCCCC-ceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 814 TNDFDDE-HCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 814 ~~~~~~~-~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
.+.|++. +.||+|+||.||+|.. .+++.||||++..... ...+.+.+|++++.++ +||||+++++++...+..+
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~ 87 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG---HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY 87 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS---CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc---hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence 3567764 7899999999999964 4799999999875432 2356789999999985 7999999999998755432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC---ceEeccccccc
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE---AHVSDFGIAKF 958 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfGla~~ 958 (1075)
. +++... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++. +||+|||+++.
T Consensus 88 l-v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~ 163 (316)
T 2ac3_A 88 L-VFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSG 163 (316)
T ss_dssp E-EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred E-EEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence 2 222221 235688999999999999999999999 9999999999999998876 99999999986
Q ss_pred cCCCCC-------ceeccccccCccCcccccc-----CCCCcccchHhHHHHHHHHHhCCCCCCccCccccch-------
Q 042958 959 LKPDSS-------NWTELAGTYGYVAPELAYT-----MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSS------- 1019 (1075)
Q Consensus 959 ~~~~~~-------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~------- 1019 (1075)
...... ......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||..........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 243 (316)
T 2ac3_A 164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP 243 (316)
T ss_dssp ------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCH
T ss_pred cccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccch
Confidence 543211 1223569999999999875 558899999999999999999999997543221000
Q ss_pred hhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1020 LNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.........+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 0011112222222222221111123456999999999999999999999986
No 237
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=8.6e-34 Score=347.33 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=192.9
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|+.. +++.||||+++..........+.+..|..++..+ +||+|+++++++.+.+..+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999654 6899999998643211122346788899999988 7999999999987755432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
++++... ....+++.+++.++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+....
T Consensus 419 -lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 -FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp -EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred -EEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 2222221 135689999999999999999999999 999999999999999999999999999987655
Q ss_pred CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCc
Q 042958 962 DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIV 1041 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1075)
........+||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......+.......+.
T Consensus 495 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--------~~~~~~i~~~~~~~p~--- 563 (674)
T 3pfq_A 495 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--------DELFQSIMEHNVAYPK--- 563 (674)
T ss_dssp TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHSSCCCCCT---
T ss_pred CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--------HHHHHHHHhCCCCCCc---
Confidence 55556667899999999999999999999999999999999999999974322 2223334444433332
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCH-----HHHHh
Q 042958 1042 QDKLISIVEVAISCLDENPESRPTM-----PKVSQ 1071 (1075)
Q Consensus 1042 ~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1071 (1075)
..+.++.+++.+||++||++||++ +||++
T Consensus 564 -~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 564 -SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp -TSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred -cCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 234468999999999999999998 67654
No 238
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=4.3e-34 Score=327.30 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=170.4
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC--CcCceeeEE-------EEe
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI--RHRNIVKFY-------GFC 883 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~ 883 (1075)
..+|+..+.||+|+||.||+|... +|+.||||++...........+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345888899999999999999764 7999999999876554555567788885444444 699988755 333
Q ss_pred ecccc----------------chhheecCccc---------cCCCCHHHH------HHHHHHHHHHHHHHHhCCCCCeEE
Q 042958 884 SHVRH----------------SLAMILSNNAA---------AKDLGWTRR------MNVIKGISDALSYMHNDCFPPIVH 932 (1075)
Q Consensus 884 ~~~~~----------------~l~~~~~~~~~---------~~~l~~~~~------~~i~~~i~~~L~~LH~~~~~~ivH 932 (1075)
...+. .++++++.... ...+.+..+ ..++.||++||+|||+. +|+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivH 217 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GLVH 217 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCcc
Confidence 32211 12222222111 223455555 77889999999999999 9999
Q ss_pred ecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCcccccc--CCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 933 RDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 933 ~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
|||||+||+++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.
T Consensus 218 rDikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~ 294 (371)
T 3q60_A 218 GHFTPDNLFIMPDGRLMLGDVSALWKVGT---RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFG 294 (371)
T ss_dssp TTCSGGGEEECTTSCEEECCGGGEEETTC---EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred CcCCHHHEEECCCCCEEEEecceeeecCC---CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999987642 2224567799999999987 679999999999999999999999997
Q ss_pred ccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1011 FISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
............ .............+ .....+..+.+++.+||+.||++|||++|+++
T Consensus 295 ~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 295 LVTPGIKGSWKR-PSLRVPGTDSLAFG--SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp BCCTTCTTCCCB-CCTTSCCCCSCCCT--TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CcCcccccchhh-hhhhhccccccchh--hccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 543221111000 00011111111111 11233456999999999999999999999975
No 239
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=328.16 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=185.6
Q ss_pred hcCCCCCceecccCceEEEEEEECC---------CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceee------
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELAS---------GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVK------ 878 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------ 878 (1075)
.++|++.+.||+|+||.||+|.... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~ 112 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLY 112 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhc
Confidence 3688999999999999999997653 789999998643 36789999999999999988
Q ss_pred ---------EEEEeeccccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Q 042958 879 ---------FYGFCSHVRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKN 939 (1075)
Q Consensus 879 ---------l~~~~~~~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~N 939 (1075)
+++++...+....++++... ....+++.+++.++.||++||+|||+. +|+||||||+|
T Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~N 189 (352)
T 2jii_A 113 STPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAEN 189 (352)
T ss_dssp TCTTCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGG
T ss_pred cCCccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHH
Confidence 56666653333333332221 125689999999999999999999999 99999999999
Q ss_pred eeeCCCC--CceEeccccccccCCCCC-------ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 940 VLLDFDN--EAHVSDFGIAKFLKPDSS-------NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 940 ill~~~~--~~kl~DfGla~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
|+++.++ .+||+|||+++.+..... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.
T Consensus 190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 269 (352)
T 2jii_A 190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT 269 (352)
T ss_dssp EEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred EEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 9999998 999999999987654321 1233579999999999999999999999999999999999999997
Q ss_pred ccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1011 FISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
................... ...+..........+..+.+++.+||+.||++|||++||++.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 332 (352)
T 2jii_A 270 NCLPNTEDIMKQKQKFVDK-PGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLE 332 (352)
T ss_dssp GGTTCHHHHHHHHHHHHHS-CCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhccCC-hhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHH
Confidence 5432111111000000110 11111111011122356999999999999999999999999874
No 240
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=7.6e-34 Score=311.39 Aligned_cols=241 Identities=22% Similarity=0.322 Sum_probs=179.5
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++...........+.+.+|+.+++.++||||+++++++......+.+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 467889999999999999999765 7999999998643211222356789999999999999999999998776543222
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 90 -~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 -MEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp -EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred -EeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 22211 134578999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcH
Q 042958 964 SNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQ 1042 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1075)
......|++.|+|||.+.+..+ +.++||||+|+++|||++|+.||+..... .....+.......+.
T Consensus 166 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~---- 232 (276)
T 2h6d_A 166 -FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--------TLFKKIRGGVFYIPE---- 232 (276)
T ss_dssp ------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT----
T ss_pred -ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--------HHHHHhhcCcccCch----
Confidence 2334578999999999987765 68999999999999999999999743211 111111112222221
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1043 DKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1043 ~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+..+.+++.+||+.||++|||++|+++
T Consensus 233 ~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 233 YLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 12345899999999999999999999986
No 241
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=9.7e-34 Score=336.85 Aligned_cols=243 Identities=22% Similarity=0.324 Sum_probs=184.5
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +++.||||++........ ....+.+|+.+++.++||||++++++|......+.+
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS-SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----C-TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCch-HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 456888999999999999999765 789999999876432222 246789999999999999999999999876544322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC---CCceEeccccccccC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD---NEAHVSDFGIAKFLK 960 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~DfGla~~~~ 960 (1075)
++... ....+++..+..++.||++||+|||+. +|+||||||+||+++.. +.+||+|||+++.+.
T Consensus 115 -~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 115 -MECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp -EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred -EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 22211 134688999999999999999999999 99999999999999764 459999999998776
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. .......||+.|+|||++. ..++.++||||+||++|+|++|+.||...... .....+.......+...
T Consensus 191 ~~-~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~~~ 260 (494)
T 3lij_A 191 NQ-KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--------EILRKVEKGKYTFDSPE 260 (494)
T ss_dssp TT-BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCSGG
T ss_pred CC-ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCchh
Confidence 43 3344567999999999886 46999999999999999999999999743321 11222222222222222
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+..+.+++.+||+.||++|||+.|+++
T Consensus 261 ~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 261 WKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp GTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 2334556999999999999999999999985
No 242
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1e-33 Score=337.58 Aligned_cols=245 Identities=23% Similarity=0.315 Sum_probs=187.4
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc----------hhHHHHHHHHHHHHhcCCcCceeeEEE
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE----------MTFQQEFLNEVKALTEIRHRNIVKFYG 881 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~----------~~~~~~~~~E~~~l~~l~h~niv~l~~ 881 (1075)
..++|++.+.||+|+||.||+|... +++.||||++....... ....+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999664 68999999987543221 123567899999999999999999999
Q ss_pred EeeccccchhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC---Cce
Q 042958 882 FCSHVRHSLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN---EAH 949 (1075)
Q Consensus 882 ~~~~~~~~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~k 949 (1075)
++.+....+.+ ++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv-~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLV-TEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEE-EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEE-EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEE
Confidence 99876544322 22221 135689999999999999999999999 999999999999999876 699
Q ss_pred EeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhc
Q 042958 950 VSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEM 1029 (1075)
Q Consensus 950 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1075)
|+|||+++.+... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+
T Consensus 190 l~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i 259 (504)
T 3q5i_A 190 IVDFGLSSFFSKD-YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ--------DIIKKV 259 (504)
T ss_dssp ECCCTTCEECCTT-SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHH
T ss_pred EEECCCCEEcCCC-CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHH
Confidence 9999999877643 33455679999999999874 6899999999999999999999999743321 122222
Q ss_pred cCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1030 LDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.......+.......+.++.+++.+|++.||.+|||++|+++
T Consensus 260 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 260 EKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 222222221111233456999999999999999999999985
No 243
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.1e-33 Score=310.25 Aligned_cols=241 Identities=21% Similarity=0.327 Sum_probs=184.2
Q ss_pred cCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc---ccch
Q 042958 815 NDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV---RHSL 890 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---~~~l 890 (1075)
..|.+.+.||+|+||.||+|.. .++..||+|++..... .....+.+.+|+.++++++||||+++++++... ...+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhh-CHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence 3467778899999999999965 4788999999875433 234467899999999999999999999988653 2223
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCCeeeC-CCCCceEeccccccc
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPP--IVHRDISSKNVLLD-FDNEAHVSDFGIAKF 958 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~DfGla~~ 958 (1075)
.++++... ....+++..+..++.|++.||+|||+. + |+||||||+||+++ .++.+||+|||++..
T Consensus 105 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 33332221 125688999999999999999999999 7 99999999999998 789999999999976
Q ss_pred cCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 959 LKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
.... ......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||....... ...........+ .
T Consensus 182 ~~~~--~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-------~~~~~~~~~~~~--~ 249 (290)
T 1t4h_A 182 KRAS--FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA-------QIYRRVTSGVKP--A 249 (290)
T ss_dssp CCTT--SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH-------HHHHHHTTTCCC--G
T ss_pred cccc--ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH-------HHHHHHhccCCc--c
Confidence 5432 3345679999999998864 58999999999999999999999997433211 111111111111 1
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+..+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 112222346999999999999999999999986
No 244
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=320.94 Aligned_cols=241 Identities=22% Similarity=0.313 Sum_probs=170.1
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeecc-----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHV----- 886 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~----- 886 (1075)
..+|++.+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.+++++. ||||+++++++...
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~ 103 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN---EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC---chHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence 45788999999999999999975 47999999998543 3344678899999999996 99999999998422
Q ss_pred --ccchhheecCc-----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCCeeeCCCCCceEe
Q 042958 887 --RHSLAMILSNN-----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPP--IVHRDISSKNVLLDFDNEAHVS 951 (1075)
Q Consensus 887 --~~~l~~~~~~~-----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~ 951 (1075)
...+.++++.. .....+++.+++.++.||+.||+|||+. + |+||||||+||+++.++.+||+
T Consensus 104 ~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~ 180 (337)
T 3ll6_A 104 TGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLC 180 (337)
T ss_dssp TSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBC
T ss_pred cCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEe
Confidence 11122222211 1234589999999999999999999999 7 9999999999999999999999
Q ss_pred ccccccccCCCCCc------------eeccccccCccCcccc---ccCCCCcccchHhHHHHHHHHHhCCCCCCccCccc
Q 042958 952 DFGIAKFLKPDSSN------------WTELAGTYGYVAPELA---YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMS 1016 (1075)
Q Consensus 952 DfGla~~~~~~~~~------------~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 1016 (1075)
|||+++........ .....||+.|+|||++ .+..++.++||||||+++|||++|+.||.......
T Consensus 181 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 260 (337)
T 3ll6_A 181 DFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR 260 (337)
T ss_dssp CCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred cCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 99999876543221 1134689999999998 56678899999999999999999999996432211
Q ss_pred cchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1017 SSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
. ..... ..+.... ....+.+++.+||+.||++|||++|+++.|+
T Consensus 261 ~--------~~~~~--~~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 304 (337)
T 3ll6_A 261 I--------VNGKY--SIPPHDT----QYTVFHSLIRAMLQVNPEERLSIAEVVHQLQ 304 (337)
T ss_dssp -------------C--CCCTTCC----SSGGGHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred h--------hcCcc--cCCcccc----cchHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 0 01100 1111111 1224889999999999999999999999874
No 245
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=5.9e-34 Score=319.71 Aligned_cols=247 Identities=23% Similarity=0.284 Sum_probs=183.2
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCC-----CchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLP-----GEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
.++|++.+.||+|+||.||+|... +++.||||++..... ........+.+|++++++++||||+++++++....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 467899999999999999999654 689999999865321 11222346889999999999999999999987765
Q ss_pred cchhheecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC---ceEecccccc
Q 042958 888 HSLAMILSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE---AHVSDFGIAK 957 (1075)
Q Consensus 888 ~~l~~~~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfGla~ 957 (1075)
..+.+.+... .....+++.....++.||++||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~ 165 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 165 (322)
T ss_dssp EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence 4333322211 1235688999999999999999999999 9999999999999987664 9999999998
Q ss_pred ccCCCCCceeccccccCccCccccc---cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 958 FLKPDSSNWTELAGTYGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
..... .......||+.|+|||++. ...++.++||||+|+++|||++|+.||......... . ..+.....
T Consensus 166 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~---~~~~~~~~ 237 (322)
T 2ycf_A 166 ILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL----K---DQITSGKY 237 (322)
T ss_dssp ECCCC-HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCH----H---HHHHHTCC
T ss_pred ecccc-cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHH----H---HHHHhCcc
Confidence 76532 2233457899999999864 567889999999999999999999999743321111 0 11111111
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..........+..+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 238 NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1111111123456899999999999999999999986
No 246
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=319.29 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=184.9
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHS--- 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 889 (1075)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|+.+++.++||||+++++++......
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 36788889999999999999965 479999999997643 2334467889999999999999999999998765432
Q ss_pred --hhheecCcc------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 890 --LAMILSNNA------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 890 --l~~~~~~~~------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+.++++... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 178 (353)
T 3coi_A 102 YDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA 178 (353)
T ss_dssp CCCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC---
T ss_pred eeEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCCC
Confidence 122222111 123589999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhh------------------
Q 042958 962 DSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNL------------------ 1022 (1075)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~------------------ 1022 (1075)
. .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.............
T Consensus 179 ~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (353)
T 3coi_A 179 E---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKA 255 (353)
T ss_dssp --------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHH
T ss_pred C---ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHH
Confidence 2 334578999999998877 678999999999999999999999997543211000000
Q ss_pred -hhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1023 -NIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1023 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......................+..+.+++.+|++.||++|||++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 256 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0000000000000001112234557999999999999999999999985
No 247
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1.9e-33 Score=323.94 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=183.6
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH----- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 888 (1075)
..+|+..+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++.....
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~ 111 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV 111 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence 356888999999999999999887777799998864322 12369999999999999999999865332
Q ss_pred chhheecCcc------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-CCCCceEecccc
Q 042958 889 SLAMILSNNA------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD-FDNEAHVSDFGI 955 (1075)
Q Consensus 889 ~l~~~~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfGl 955 (1075)
.+.++++... ....+++..+..++.||++||+|||+. +|+||||||+||+++ .++.+||+|||+
T Consensus 112 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~ 188 (394)
T 4e7w_A 112 FLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGS 188 (394)
T ss_dssp EEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence 1222222221 245689999999999999999999999 999999999999999 789999999999
Q ss_pred ccccCCCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh-----------hh
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN-----------LN 1023 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~-----------~~ 1023 (1075)
|+...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||............ ..
T Consensus 189 a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~ 267 (394)
T 4e7w_A 189 AKILIAGE-PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIK 267 (394)
T ss_dssp CEECCTTC-CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred cccccCCC-CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 98765433 23456789999999998765 5899999999999999999999999754322110000 00
Q ss_pred hhhhhccCCCCCCCCc------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 IALDEMLDPRLPTPSC------IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..........++.... .....+.++.+++.+||+.||++|||+.|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 268 TMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0001111111111100 11123457999999999999999999999986
No 248
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=7.4e-34 Score=313.76 Aligned_cols=237 Identities=19% Similarity=0.370 Sum_probs=180.6
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CC-------CEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeec
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SG-------EIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSH 885 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g-------~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 885 (1075)
.++|++.+.||+|+||.||+|... ++ ..||+|++... .....+.+.+|++++++++||||+++++++..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA---HRNYSESFFEAASMMSKLSHKHLVLNYGVCVC 83 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG---GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc---cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence 467888899999999999999554 34 47999998643 23345789999999999999999999999987
Q ss_pred cccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC--------
Q 042958 886 VRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE-------- 947 (1075)
Q Consensus 886 ~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-------- 947 (1075)
.+..+. +++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 84 ~~~~~l-v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~ 159 (289)
T 4fvq_A 84 GDENIL-VQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPF 159 (289)
T ss_dssp TTCCEE-EEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred CCCCEE-EEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccce
Confidence 554332 222211 123388999999999999999999999 9999999999999998887
Q ss_pred ceEeccccccccCCCCCceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCC-CCccCccccchhhhhhh
Q 042958 948 AHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHP-RDFISSMSSSSLNLNIA 1025 (1075)
Q Consensus 948 ~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p-~~~~~~~~~~~~~~~~~ 1025 (1075)
+||+|||.+...... ....||+.|+|||++.+ ..++.++||||+|+++|||++|..| |....... ....
T Consensus 160 ~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-----~~~~ 230 (289)
T 4fvq_A 160 IKLSDPGISITVLPK----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-----KLQF 230 (289)
T ss_dssp EEECCCCSCTTTSCH----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-----HHHH
T ss_pred eeeccCcccccccCc----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-----HHHH
Confidence 999999999765322 33568899999999987 6789999999999999999996554 43221110 0000
Q ss_pred hhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1026 LDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.. .....+.. . +.++.+++.+||+.||++|||++|+++.|+
T Consensus 231 ~~--~~~~~~~~--~----~~~l~~li~~~l~~dp~~Rps~~~ll~~l~ 271 (289)
T 4fvq_A 231 YE--DRHQLPAP--K----AAELANLINNCMDYEPDHRPSFRAIIRDLN 271 (289)
T ss_dssp HH--TTCCCCCC--S----SCTTHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred hh--ccCCCCCC--C----CHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 01 11111111 1 224889999999999999999999999875
No 249
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.4e-33 Score=326.90 Aligned_cols=249 Identities=19% Similarity=0.280 Sum_probs=187.8
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC--------cCceeeEEEEee
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR--------HRNIVKFYGFCS 884 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~ 884 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~ 111 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK 111 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence 36799999999999999999965 57899999998642 334578899999999995 788999999886
Q ss_pred cc---ccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC-----
Q 042958 885 HV---RHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN----- 946 (1075)
Q Consensus 885 ~~---~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----- 946 (1075)
.. ...++++++... ....+++..++.++.||+.||+|||+++ +|+||||||+||+++.++
T Consensus 112 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~ 189 (397)
T 1wak_A 112 ISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRR 189 (397)
T ss_dssp EEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHH
T ss_pred ecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhh
Confidence 32 222222222221 1245899999999999999999999964 899999999999999775
Q ss_pred --------------------------------------------CceEeccccccccCCCCCceeccccccCccCccccc
Q 042958 947 --------------------------------------------EAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAY 982 (1075)
Q Consensus 947 --------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~ 982 (1075)
.+||+|||.++..... .....||+.|+|||++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~~ 266 (397)
T 1wak_A 190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---FTEDIQTRQYRSLEVLI 266 (397)
T ss_dssp HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---SCSCCSCGGGCCHHHHH
T ss_pred hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---CccCCCCCcccCChhhc
Confidence 8999999999876533 34457899999999999
Q ss_pred cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh-hhhhhhh------------------ccCC-----CCCC--
Q 042958 983 TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN-LNIALDE------------------MLDP-----RLPT-- 1036 (1075)
Q Consensus 983 ~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~-~~~~~~~------------------~~~~-----~~~~-- 1036 (1075)
+..++.++|||||||++|||++|+.||............ ......+ +... ....
T Consensus 267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (397)
T 1wak_A 267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK 346 (397)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence 999999999999999999999999999754432211000 0000000 0000 0000
Q ss_pred ----------CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1037 ----------PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1037 ----------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...........+.+++.+||+.||++|||++|+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00123566778999999999999999999999986
No 250
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=318.02 Aligned_cols=251 Identities=25% Similarity=0.425 Sum_probs=188.9
Q ss_pred hcCCCCCceecccCceEEEEEEE-----CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-----ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 888 (1075)
.++|++.+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++...+.
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC---CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 45688889999999999999974 36899999998753 23446789999999999999999999999876442
Q ss_pred -chhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccc
Q 042958 889 -SLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAK 957 (1075)
Q Consensus 889 -~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~ 957 (1075)
.+.++++... ....+++.++++++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred CceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 2222222221 124589999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCce---eccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcc-------ccchhhhhhhhh
Q 042958 958 FLKPDSSNW---TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSM-------SSSSLNLNIALD 1027 (1075)
Q Consensus 958 ~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~-------~~~~~~~~~~~~ 1027 (1075)
......... ....++..|+|||.+.+..++.++||||+|+++|||++|+.|+...... ............
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH
Confidence 876543321 2345677899999999888999999999999999999999997632100 000000000111
Q ss_pred hcc-C-CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1028 EML-D-PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1028 ~~~-~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
+.+ . .+.+.+ ...+.++.+++.+||+.||++|||++||++.|+
T Consensus 274 ~~~~~~~~~~~~----~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~ 318 (326)
T 2w1i_A 274 ELLKNNGRLPRP----DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 318 (326)
T ss_dssp HHHHTTCCCCCC----TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred HHhhcCCCCCCC----CcccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 111 1 122222 223456999999999999999999999999875
No 251
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.7e-33 Score=320.48 Aligned_cols=253 Identities=23% Similarity=0.315 Sum_probs=185.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----H 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~ 888 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++... ........+.+|++++++++||||+++++++.... .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF--DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc--ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 468889999999999999999765 7999999998643 33344567889999999999999999999886532 2
Q ss_pred chhheecCcc-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 889 SLAMILSNNA-------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 889 ~l~~~~~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
...++++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~ 164 (353)
T 2b9h_A 88 EVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDE 164 (353)
T ss_dssp CEEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred eEEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence 2222222211 134689999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCc----------eeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhh---------
Q 042958 962 DSSN----------WTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLN--------- 1021 (1075)
Q Consensus 962 ~~~~----------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~--------- 1021 (1075)
.... .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||............
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 244 (353)
T 2b9h_A 165 SAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHS 244 (353)
T ss_dssp ---------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCS
T ss_pred ccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCch
Confidence 3211 223578999999998754 67899999999999999999999999754321100000
Q ss_pred -------hhhhhhhccC--CCCCCC--CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1022 -------LNIALDEMLD--PRLPTP--SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1022 -------~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+... +..+.. .......+.++.+++.+||+.||++|||++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 245 DNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp TTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0000000000 000000 0001123456899999999999999999999986
No 252
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.4e-33 Score=313.68 Aligned_cols=242 Identities=23% Similarity=0.370 Sum_probs=182.2
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|+++++.++||||+++++++...+..+.+
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE---EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH---HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 477899999999999999999765 689999999865432 2357889999999999999999999999875543222
Q ss_pred eecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++... ....+++.++..++.|++.||.|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 95 -~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 170 (302)
T 2j7t_A 95 -IEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT 170 (302)
T ss_dssp -EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred -EEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence 22211 135689999999999999999999999 9999999999999999999999999998643222
Q ss_pred CCceeccccccCccCcccc-----ccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 963 SSNWTELAGTYGYVAPELA-----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
........||+.|+|||++ .+..++.++||||+|+++|||++|+.||........ .........+...
T Consensus 171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~-- 243 (302)
T 2j7t_A 171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV-----LLKIAKSDPPTLL-- 243 (302)
T ss_dssp HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-----HHHHHHSCCCCCS--
T ss_pred ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH-----HHHHhccCCcccC--
Confidence 2222345789999999988 466788999999999999999999999874332110 0111111111111
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+..+.+++.+||+.||++|||++|+++
T Consensus 244 --~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 244 --TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp --SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred --CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 12233456999999999999999999999986
No 253
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=3.3e-34 Score=318.91 Aligned_cols=252 Identities=24% Similarity=0.395 Sum_probs=169.4
Q ss_pred HHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
...++|++.+.||+|+||.||+|.. .+++.||||++..... ....+++.+|+.++++++||||+++++++...+..+
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 89 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC--QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW 89 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc--chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcE
Confidence 4467899999999999999999964 4789999999865422 223567889999999999999999999997765432
Q ss_pred hheecCcc-----------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecc
Q 042958 891 AMILSNNA-----------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDF 953 (1075)
Q Consensus 891 ~~~~~~~~-----------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df 953 (1075)
.+ ++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 90 lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 165 (303)
T 2vwi_A 90 LV-MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADF 165 (303)
T ss_dssp EE-EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCC
T ss_pred EE-ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEec
Confidence 22 21111 134589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCC-----ceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 954 GIAKFLKPDSS-----NWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 954 Gla~~~~~~~~-----~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
|.+........ ......||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||..................
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 245 (303)
T 2vwi_A 166 GVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPP 245 (303)
T ss_dssp HHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCC
T ss_pred cchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCC
Confidence 99987654321 1234578999999999876 56899999999999999999999999754332111100000000
Q ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. ...... .......+..+.+++.+||+.||++|||++|+++
T Consensus 246 ~~-~~~~~~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 246 SL-ETGVQD-KEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CT-TC------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cc-cccccc-chhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00 000000 0011123346899999999999999999999986
No 254
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=3e-33 Score=324.94 Aligned_cols=246 Identities=26% Similarity=0.321 Sum_probs=181.1
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc-----
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH----- 888 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 888 (1075)
.+|+..+.||+|+||.||+|... +|+.||||++.... ..+.+|+++++.++|||||+++++|.....
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~ 126 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence 46888899999999999999775 69999999986532 123479999999999999999998854221
Q ss_pred chhheecCc------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC-CCceEecccc
Q 042958 889 SLAMILSNN------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD-NEAHVSDFGI 955 (1075)
Q Consensus 889 ~l~~~~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~DfGl 955 (1075)
.+.++++.. .....+++..++.++.||++||+|||+. +|+||||||+||+++.+ +.+||+|||+
T Consensus 127 ~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~ 203 (420)
T 1j1b_A 127 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGS 203 (420)
T ss_dssp EEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred eEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchh
Confidence 122222221 1245689999999999999999999999 99999999999999966 5689999999
Q ss_pred ccccCCCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh-------hhhh
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN-------IALD 1027 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~-------~~~~ 1027 (1075)
++.+.... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+....... ..+.
T Consensus 204 a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~ 282 (420)
T 1j1b_A 204 AKQLVRGE-PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIR 282 (420)
T ss_dssp CEECCTTC-CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred hhhcccCC-CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 98765433 23446789999999998765 789999999999999999999999975432211000000 0000
Q ss_pred hc----cCCCCCCCCc------CcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EM----LDPRLPTPSC------IVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~----~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.+ ....++.... .....+.++.+++.+||+.||++|||+.|+++
T Consensus 283 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 283 EMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 00 0111111000 01123457999999999999999999999985
No 255
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=317.18 Aligned_cols=244 Identities=25% Similarity=0.381 Sum_probs=180.0
Q ss_pred HHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccc-
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVR- 887 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~- 887 (1075)
....++|++.+.||+|+||.||+|.. .+|+.||||++..... ..+.+.+|+.+++++ +||||+++++++....
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc----cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 34567899999999999999999976 4799999999865422 236788999999999 8999999999987632
Q ss_pred ----cchhheecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 888 ----HSLAMILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 888 ----~~l~~~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
..+.++++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEee
Confidence 22222222221 135688999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCceeccccccCccCccccc-----cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
||++..............|++.|+|||++. +..++.++||||||+++|||++|+.||........ .....
T Consensus 173 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~ 247 (326)
T 2x7f_A 173 FGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA-----LFLIP 247 (326)
T ss_dssp CTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH-----HHHHH
T ss_pred CcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH-----HHHhh
Confidence 999987654433444567999999999987 56788999999999999999999999964332110 01111
Q ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1028 EMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+... ....+..+.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 248 RNPAPRLK-----SKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HSCCCCCS-----CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCccccCC-----ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 11111111 1122346999999999999999999999986
No 256
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=318.70 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=182.4
Q ss_pred HhcCCCCCceecccCceEEEEE------EECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC---cCceeeEEEEe
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKA------ELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR---HRNIVKFYGFC 883 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~------~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~ 883 (1075)
..++|++.+.||+|+||.||+| ...+++.||||++.... ..++..|+++++.++ |+||+++++++
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~~~ 136 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYSAH 136 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEEEE
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhheee
Confidence 4577889999999999999999 34578999999986431 356778888888886 99999999999
Q ss_pred eccccchhhe-ecCcc------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC------
Q 042958 884 SHVRHSLAMI-LSNNA------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF------ 944 (1075)
Q Consensus 884 ~~~~~~l~~~-~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~------ 944 (1075)
...+..+.++ +...+ ....+++..++.|+.||++||+|||+. +|+||||||+||+++.
T Consensus 137 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~ 213 (365)
T 3e7e_A 137 LFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQD 213 (365)
T ss_dssp ECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC-
T ss_pred ecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCcc
Confidence 7765443222 11110 245689999999999999999999999 9999999999999998
Q ss_pred -----CCCceEeccccccccCC--CCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 945 -----DNEAHVSDFGIAKFLKP--DSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 945 -----~~~~kl~DfGla~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
++.+||+|||+|+.+.. ........+||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 214 ~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~ 293 (365)
T 3e7e_A 214 DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC 293 (365)
T ss_dssp -----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE
T ss_pred ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce
Confidence 89999999999976542 23344567899999999999999999999999999999999999999853222110
Q ss_pred chhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCC-CCHHHHHhhhc
Q 042958 1018 SSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESR-PTMPKVSQLLK 1074 (1075)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Ps~~evl~~L~ 1074 (1075)
.....+... . ....+.+++..|++.+|.+| |+++++.+.|+
T Consensus 294 -----------~~~~~~~~~--~---~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~ 335 (365)
T 3e7e_A 294 -----------KPEGLFRRL--P---HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK 335 (365)
T ss_dssp -----------EECSCCTTC--S---SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred -----------eechhcccc--C---cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Confidence 011111111 1 13358899999999999999 57777776653
No 257
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.8e-33 Score=327.56 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=156.3
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC------CcCceeeEEEEeecc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI------RHRNIVKFYGFCSHV 886 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~ 886 (1075)
..+|++.+.||+|+||.||+|.. .+++.||||++.. .....+++.+|+++++.+ +|+||+++++++...
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN----EKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS----CHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC----ccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 45789999999999999999955 4689999999864 233456778888888887 577999999998765
Q ss_pred ccchhhe-ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC--ceEecccc
Q 042958 887 RHSLAMI-LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE--AHVSDFGI 955 (1075)
Q Consensus 887 ~~~l~~~-~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~DfGl 955 (1075)
...+.++ +... .....+++..+..++.||+.||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 172 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~ 248 (429)
T 3kvw_A 172 NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGS 248 (429)
T ss_dssp TEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred CeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeeccc
Confidence 5432222 1111 1123489999999999999999999999 9999999999999999987 99999999
Q ss_pred ccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccC
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFIS 1013 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~ 1013 (1075)
|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 249 a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~ 303 (429)
T 3kvw_A 249 SCYEHQR---VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED 303 (429)
T ss_dssp CEETTCC---CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ceecCCc---ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence 9865432 334678999999999999999999999999999999999999997543
No 258
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.8e-33 Score=318.38 Aligned_cols=245 Identities=24% Similarity=0.371 Sum_probs=183.6
Q ss_pred HhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHH-HhcCCcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKA-LTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|.. .+|+.||||++...... ....++..|..+ ++.++||||+++++++...+..+
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~ 126 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS--QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW 126 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCC--HHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCc--HHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEE
Confidence 346788889999999999999965 57999999999765332 223455566655 78889999999999998765432
Q ss_pred hhe-ecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 891 AMI-LSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 891 ~~~-~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
.++ +... .....+++..++.++.||+.||+|||+.. +|+||||||+||+++.++.+||+|||+++..
T Consensus 127 lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 127 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp EEECCCSEEHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred EEHHHhhCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 221 1111 12457899999999999999999999742 8999999999999999999999999999876
Q ss_pred CCCCCceeccccccCccCccccc----cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCC
Q 042958 960 KPDSSNWTELAGTYGYVAPELAY----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLP 1035 (1075)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1075)
... .......||+.|+|||++. ...++.++||||||+++|||++|+.||+...... ...........+
T Consensus 205 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~-------~~~~~~~~~~~~ 276 (340)
T 3an0_A 205 VDS-VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF-------QQLKQVVEEPSP 276 (340)
T ss_dssp SCH-HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH-------HHHHHHHHSCCC
T ss_pred ccc-cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchH-------HHHHHHhcCCCC
Confidence 532 1223357999999999964 3478999999999999999999999997432110 111111111111
Q ss_pred CCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1036 TPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1036 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. .....+.++.+++.+||+.||++|||++|+++
T Consensus 277 ~~--~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 277 QL--PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp CC--CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CC--CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 11 11233456999999999999999999999986
No 259
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=3.4e-33 Score=308.32 Aligned_cols=237 Identities=21% Similarity=0.294 Sum_probs=183.1
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccch
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l 890 (1075)
..++|++.+.||+|+||.||+|... +++.||||++....... ....++.+|+..+..+ +||||+++++++.+.+..+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~ 87 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS-VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence 3567899999999999999999765 79999999987654333 3357788999999999 9999999999997755433
Q ss_pred hheecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC------------
Q 042958 891 AMILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD------------ 945 (1075)
Q Consensus 891 ~~~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~------------ 945 (1075)
.+ ++... ....+++.+++.++.||++||+|||+. +|+||||||+||+++.+
T Consensus 88 lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~ 163 (289)
T 1x8b_A 88 IQ-NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDE 163 (289)
T ss_dssp EE-EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------
T ss_pred EE-EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccc
Confidence 22 22211 125589999999999999999999999 99999999999999844
Q ss_pred -------CCceEeccccccccCCCCCceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 946 -------NEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 946 -------~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
..+||+|||.+....... ...||+.|+|||.+.+. .++.++||||+|+++|||++|+.|+....
T Consensus 164 ~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---- 235 (289)
T 1x8b_A 164 DDWASNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---- 235 (289)
T ss_dssp ------CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH----
T ss_pred ccccCCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh----
Confidence 479999999998765432 24689999999998766 56689999999999999999998764211
Q ss_pred chhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhh
Q 042958 1018 SSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQL 1072 (1075)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1072 (1075)
....+.....+.. ....+..+.+++.+||+.||++|||++|+++-
T Consensus 236 -------~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 236 -------QWHEIRQGRLPRI---PQVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp -------HHHHHHTTCCCCC---SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred -------HHHHHHcCCCCCC---CcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1111222222211 11223469999999999999999999999863
No 260
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.8e-33 Score=310.64 Aligned_cols=247 Identities=21% Similarity=0.302 Sum_probs=189.8
Q ss_pred HHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCc------hhHHHHHHHHHHHHhcCC-cCceeeEEEEe
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGE------MTFQQEFLNEVKALTEIR-HRNIVKFYGFC 883 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~ 883 (1075)
...++|++.+.||+|+||.||+|... +|+.||||++....... ....+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 34578999999999999999999764 68999999987543211 123467889999999995 99999999999
Q ss_pred eccccchhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccc
Q 042958 884 SHVRHSLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFG 954 (1075)
Q Consensus 884 ~~~~~~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG 954 (1075)
......+.+ ++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 94 ~~~~~~~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 94 ETNTFFFLV-FDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp ECSSEEEEE-EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred ccCCeEEEE-EeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEeccc
Confidence 775543222 22211 234689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeccccccCccCccccc------cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhh
Q 042958 955 IAKFLKPDSSNWTELAGTYGYVAPELAY------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDE 1028 (1075)
Q Consensus 955 la~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1028 (1075)
.+....... ......|++.|+|||++. ...++.++||||+|+++|||++|+.||...... .....
T Consensus 170 ~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--------~~~~~ 240 (298)
T 1phk_A 170 FSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--------LMLRM 240 (298)
T ss_dssp TCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHH
T ss_pred chhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH--------HHHHH
Confidence 998765432 334567899999999875 456789999999999999999999998643221 11111
Q ss_pred ccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1029 MLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 241 IMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 1111221111122344567999999999999999999999985
No 261
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2.5e-33 Score=318.41 Aligned_cols=245 Identities=20% Similarity=0.315 Sum_probs=188.0
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCch--------------hHHHHHHHHHHHHhcCCcCceeeE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEM--------------TFQQEFLNEVKALTEIRHRNIVKF 879 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~--------------~~~~~~~~E~~~l~~l~h~niv~l 879 (1075)
.++|++.+.||+|+||.||+|.. +|+.||||++........ ...+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999987 899999999864321111 112789999999999999999999
Q ss_pred EEEeeccccchhheec-C-------------ccc--cCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEecCCCCCeee
Q 042958 880 YGFCSHVRHSLAMILS-N-------------NAA--AKDLGWTRRMNVIKGISDALSYMHN-DCFPPIVHRDISSKNVLL 942 (1075)
Q Consensus 880 ~~~~~~~~~~l~~~~~-~-------------~~~--~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill 942 (1075)
++++...+..+.++.. . ... ...+++..++.++.|++.||+|||+ . +|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEE
Confidence 9999876543222111 0 111 4568999999999999999999999 8 99999999999999
Q ss_pred CCCCCceEeccccccccCCCCCceeccccccCccCccccccC-CCCc-ccchHhHHHHHHHHHhCCCCCCccCccccchh
Q 042958 943 DFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTM-KVTE-KCDVYSFGVLALEVIKGKHPRDFISSMSSSSL 1020 (1075)
Q Consensus 943 ~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~ 1020 (1075)
+.++.+||+|||.+...... ......|++.|+|||.+.+. .++. ++||||+|+++|||++|+.||.......
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---- 259 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV---- 259 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH----
T ss_pred cCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH----
Confidence 99999999999999876543 34456799999999999877 5666 9999999999999999999997543211
Q ss_pred hhhhhhhhccCCCCCCCC---------------cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1021 NLNIALDEMLDPRLPTPS---------------CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.....+.......+. ......+..+.+++.+||+.||.+|||++|+++
T Consensus 260 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 260 ---ELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp ---HHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ---HHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 111111111111110 001233457999999999999999999999986
No 262
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=2.3e-33 Score=315.67 Aligned_cols=245 Identities=23% Similarity=0.347 Sum_probs=183.9
Q ss_pred hcCCCCCceecccCceEEEEEEE------CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL------ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++... .......++.+|+.++++++||||+++++++....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc--cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 57899999999999999999963 35789999999643 23344578999999999999999999999998755
Q ss_pred cchhhe-ecCc--------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC---CCce
Q 042958 888 HSLAMI-LSNN--------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD---NEAH 949 (1075)
Q Consensus 888 ~~l~~~-~~~~--------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~k 949 (1075)
..+.++ +... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.+ ..+|
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~k 183 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEE
Confidence 432221 1111 0113488999999999999999999999 99999999999999954 4699
Q ss_pred EeccccccccCCCCC--ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhh
Q 042958 950 VSDFGIAKFLKPDSS--NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIAL 1026 (1075)
Q Consensus 950 l~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1026 (1075)
|+|||+++....... ......||+.|+|||.+.+..++.++||||||+++|||++ |+.||...... ...
T Consensus 184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--------~~~ 255 (327)
T 2yfx_A 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--------EVL 255 (327)
T ss_dssp ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--------HHH
T ss_pred ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--------HHH
Confidence 999999986543322 2234567899999999998899999999999999999998 99998643221 111
Q ss_pred hhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1027 DEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
..+........ ....+..+.+++.+||+.||++|||++||++.|+
T Consensus 256 ~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~ 300 (327)
T 2yfx_A 256 EFVTSGGRMDP---PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIE 300 (327)
T ss_dssp HHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhcCCCCCC---CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 11111111111 1123346899999999999999999999999874
No 263
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.4e-33 Score=315.48 Aligned_cols=245 Identities=25% Similarity=0.340 Sum_probs=165.0
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHH-HHhcCCcCceeeEEEEeeccccchh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVK-ALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
.++|+..+.||+|+||.||+|... +|+.||||++.... ......++..|+. +++.++||||+++++++...+..+.
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV--DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC--CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc--CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 468889999999999999999764 79999999997643 2233455566665 7788899999999999987654322
Q ss_pred heecCcc-------------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 892 MILSNNA-------------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 892 ~~~~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+ ++... ....+++..+.+++.|+++|+.|||+.. +|+||||||+||+++.++.+||+|||+++.
T Consensus 99 v-~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 99 C-MELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp E-ECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred E-EeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 2 21111 1456899999999999999999999952 799999999999999999999999999987
Q ss_pred cCCCCCceeccccccCccCcccc----ccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 959 LKPDSSNWTELAGTYGYVAPELA----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
..... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||....... ...........
T Consensus 176 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-------~~~~~~~~~~~ 247 (327)
T 3aln_A 176 LVDSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-------DQLTQVVKGDP 247 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------------CCCCCSCC
T ss_pred ccccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-------HHHHHHhcCCC
Confidence 65432 22334789999999998 45678999999999999999999999997432210 11111111111
Q ss_pred CC-CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PT-PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~-~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
+. +.......+..+.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 248 PQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 11 11111223456999999999999999999999976
No 264
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.2e-32 Score=305.81 Aligned_cols=272 Identities=25% Similarity=0.345 Sum_probs=149.6
Q ss_pred CcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecc
Q 042958 146 SLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLH 225 (1075)
Q Consensus 146 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 225 (1075)
+|++|++++|.+.++.+..|.++++|++|++++|++++..|..|+++++|++|+|++|+++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444444445556666666666666666555666666666666666666665 3444333 566666666
Q ss_pred ccCCCCCCcccccCCCCCCeEeccCCCCCC--ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCC
Q 042958 226 NNSLFDSIPSELGNLRSLSMLSLGYNKLSG--SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNG 303 (1075)
Q Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 303 (1075)
+|++++..+..|..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 666665555556666777777777776642 445556555 66666666666664 343332 456666666666665
Q ss_pred CcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCC
Q 042958 304 IIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGN 383 (1075)
Q Consensus 304 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 383 (1075)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 55555666666666666666666555555555555555555555555 44444555555555555555554443333332
Q ss_pred CcccceeeeccccccccCChhhccCCCCCeEEeeccccc--cccccccccccccceeccccc
Q 042958 384 LRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLS--GSIPSEFGNLRSLSTLSLGYN 443 (1075)
Q Consensus 384 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N 443 (1075)
... -....+|+.|++++|.+. ++.|..|..+++|+.|++++|
T Consensus 287 ~~~------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VGF------------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSC------------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccc------------------ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 100 000234555555555554 344555555566666665555
No 265
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=3.2e-33 Score=312.39 Aligned_cols=245 Identities=23% Similarity=0.367 Sum_probs=183.1
Q ss_pred HHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC--cCceeeEEEEeeccccc
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR--HRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~ 889 (1075)
...++|++.+.||+|+||.||+|...+++.||||++..... .....+.+.+|++++++++ ||||+++++++......
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~ 103 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI 103 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence 34578999999999999999999888899999999875432 3344678999999999997 49999999999876543
Q ss_pred hhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 890 LAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 890 l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+. +++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++ ++.+||+|||+++.+..
T Consensus 104 ~l-v~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 104 YM-VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 178 (313)
T ss_dssp EE-EECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCC---
T ss_pred EE-EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEE-CCeEEEeeccccccccC
Confidence 22 222211 235688999999999999999999999 999999999999996 48999999999987654
Q ss_pred CCCc--eeccccccCccCcccccc-----------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhh
Q 042958 962 DSSN--WTELAGTYGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDE 1028 (1075)
Q Consensus 962 ~~~~--~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1028 (1075)
.... .....|++.|+|||.+.+ ..++.++||||||+++|||++|+.||...... ......
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-------~~~~~~ 251 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-------ISKLHA 251 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-------HHHHHH
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH-------HHHHHH
Confidence 4321 234578999999999875 46888999999999999999999999643211 111122
Q ss_pred ccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1029 MLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..++..... .....+..+.+++.+||+.||++|||++|+++
T Consensus 252 ~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 252 IIDPNHEIE--FPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHCTTSCCC--CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhcccccC--CcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 222221111 01111345899999999999999999999986
No 266
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.7e-33 Score=308.43 Aligned_cols=235 Identities=23% Similarity=0.376 Sum_probs=186.0
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc-----
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV----- 886 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----- 886 (1075)
...+|++.+.||+|+||.||+|... +|+.||+|++.... +.+.+|++++++++||||+++++++...
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 3467889999999999999999775 79999999986532 3567899999999999999999987541
Q ss_pred ----------ccchhheecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC
Q 042958 887 ----------RHSLAMILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD 945 (1075)
Q Consensus 887 ----------~~~l~~~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~ 945 (1075)
...+.++++... ....+++..++.++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~ 158 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDT 158 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEET
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCC
Confidence 111222222211 235689999999999999999999999 99999999999999999
Q ss_pred CCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhh
Q 042958 946 NEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIA 1025 (1075)
Q Consensus 946 ~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~ 1025 (1075)
+.+||+|||++....... ......|++.|+|||.+.+..++.++||||||+++|||++|..|+.... ..
T Consensus 159 ~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----------~~ 227 (284)
T 2a19_B 159 KQVKIGDFGLVTSLKNDG-KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS----------KF 227 (284)
T ss_dssp TEEEECCCTTCEESSCCS-CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH----------HH
T ss_pred CCEEECcchhheeccccc-cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH----------HH
Confidence 999999999998776443 2344578999999999999999999999999999999999999864211 11
Q ss_pred hhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1026 LDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.........+. ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 228 ~~~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~ 270 (284)
T 2a19_B 228 FTDLRDGIISD------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLT 270 (284)
T ss_dssp HHHHHTTCCCT------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhhcccccc------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 11222222221 12235889999999999999999999999874
No 267
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.1e-33 Score=308.36 Aligned_cols=245 Identities=22% Similarity=0.313 Sum_probs=188.0
Q ss_pred HHhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccch
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSL 890 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l 890 (1075)
...++|++.+.||+|+||.||+|... +++.||||++....... ...+.+.+|++++++++||||+++++++......+
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch-HHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 44578999999999999999999765 79999999986543222 23578899999999999999999999997755432
Q ss_pred hheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC---CCceEeccccccc
Q 042958 891 AMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD---NEAHVSDFGIAKF 958 (1075)
Q Consensus 891 ~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~DfGla~~ 958 (1075)
.+ ++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.+ +.+||+|||++..
T Consensus 98 lv-~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~ 173 (287)
T 2wei_A 98 IV-GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (287)
T ss_dssp EE-ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred EE-EEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence 22 22111 134689999999999999999999999 99999999999999764 4699999999987
Q ss_pred cCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCC
Q 042958 959 LKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPS 1038 (1075)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1075)
..... ......|++.|+|||.+.+. ++.++||||+|+++|+|++|+.||....... ....+.......+.
T Consensus 174 ~~~~~-~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~ 243 (287)
T 2wei_A 174 FQQNT-KMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYD--------ILKRVETGKYAFDL 243 (287)
T ss_dssp BCCCS-SCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHCCCCCCS
T ss_pred ecCCC-ccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHH--------HHHHHHcCCCCCCc
Confidence 65432 23345689999999988764 8999999999999999999999997432211 11111112221111
Q ss_pred cCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1039 CIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1039 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+..+.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 244 PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 111233456999999999999999999999986
No 268
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.8e-33 Score=321.08 Aligned_cols=249 Identities=22% Similarity=0.334 Sum_probs=186.6
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|++.+.||+|+||.||+|... +|+.||+|++.... .....+.+.+|+.++++++||||+++++++...+..+.
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l- 108 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI- 108 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEE-
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEE-
Confidence 367888999999999999999665 79999999987642 34456789999999999999999999999987654322
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~ 963 (1075)
+++... ....+++..+..++.|++.|++|||+.. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 109 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 185 (360)
T 3eqc_A 109 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS- 185 (360)
T ss_dssp EECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred EEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence 222211 1346889999999999999999999832 7999999999999999999999999999765322
Q ss_pred CceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh-----------------------
Q 042958 964 SNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL----------------------- 1020 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~----------------------- 1020 (1075)
......||+.|+|||++.+..++.++||||+|+++|||++|+.||...........
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL 264 (360)
T ss_dssp -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence 22345789999999999999999999999999999999999999974322110000
Q ss_pred -----------hhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1021 -----------NLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1021 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..............+.. .....+.++.+++.+||+.||++|||++|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 265 NKFGMDSRPPMAIFELLDYIVNEPPPKL--PSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ---------CCCHHHHHHHHHHSCCCCC--CTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccccCCCCcccchhhhhHHhccCCCCC--CcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00000011111111100 11123446999999999999999999999986
No 269
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.6e-32 Score=306.39 Aligned_cols=272 Identities=25% Similarity=0.304 Sum_probs=119.6
Q ss_pred CcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEcc
Q 042958 218 NLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLG 297 (1075)
Q Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 297 (1075)
+|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|.++. +|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECC
Confidence 34444444444433333334444444444444444443333344444444444444444442 222222 344444444
Q ss_pred CCCCCCCcCCCCCccccccceeccccccc--CCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCC
Q 042958 298 YNKLNGIIPHSLGNLTNLATLYIHNNSLS--GSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFD 375 (1075)
Q Consensus 298 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 375 (1075)
+|+++++.+..|.++++|++|++++|.++ +..+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 44444444444444445555555554443 2334444444 45555555555442 232222 344444555554444
Q ss_pred CCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcc
Q 042958 376 SIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGN 455 (1075)
Q Consensus 376 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 455 (1075)
..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 44444444445555555555554444444444455555555555444 33444444444555555544444433333332
Q ss_pred ccccccccccCCccccCCCccccCcCCCCEEeCCCCccc--CCCcccccCCCccceeeccCC
Q 042958 456 LTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLS--GSIPQSLGNLSNLVILYLYNN 515 (1075)
Q Consensus 456 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N 515 (1075)
... -.....|+.|++++|++. +..|..|..+++|+.+++++|
T Consensus 287 ~~~------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VGF------------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSC------------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccc------------------ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 100 000234455555555554 344455555555555555555
No 270
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=4.2e-33 Score=314.09 Aligned_cols=248 Identities=20% Similarity=0.261 Sum_probs=184.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeecccc-ch
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRH-SL 890 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~-~l 890 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++... ..+.+.+|++++++++ ||||+++++++..... ..
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence 36788999999999999999965 57999999998642 1467899999999997 9999999999986432 22
Q ss_pred hheecCccc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCC-CceEeccccccccCCCC
Q 042958 891 AMILSNNAA------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDN-EAHVSDFGIAKFLKPDS 963 (1075)
Q Consensus 891 ~~~~~~~~~------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~DfGla~~~~~~~ 963 (1075)
.++++.... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+++......
T Consensus 109 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~ 185 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 185 (330)
T ss_dssp EEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred EEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC
Confidence 222222211 23478899999999999999999999 999999999999999777 89999999998765443
Q ss_pred CceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh---------hhhhhh-------
Q 042958 964 SNWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL---------NLNIAL------- 1026 (1075)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~---------~~~~~~------- 1026 (1075)
......|+..|+|||.+.+ ..++.++||||+|+++|||++|+.||........... ......
T Consensus 186 -~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 264 (330)
T 3nsz_A 186 -EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIEL 264 (330)
T ss_dssp -CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCC
T ss_pred -ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhcccc
Confidence 3345678999999999877 6689999999999999999999999853221100000 000000
Q ss_pred ----hhccCCCCCC------CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1027 ----DEMLDPRLPT------PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1027 ----~~~~~~~~~~------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.......... ........+.++.+++.+||+.||++|||++|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 265 DPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 0000000000 00011223557999999999999999999999986
No 271
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.7e-33 Score=319.81 Aligned_cols=256 Identities=21% Similarity=0.216 Sum_probs=178.1
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV 886 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 886 (1075)
.+.....++|++.+.||+|+||.||+|.. .+|+.||||++...... ...+.+|++.++.++||||+++++++...
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~l~~l~h~niv~~~~~~~~~ 91 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF----RNRELQIMQDLAVLHHPNIVQLQSYFYTL 91 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC----CCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc----cHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence 45567789999999999999999999976 47999999988653222 24566788888999999999999998653
Q ss_pred cc------chhheecCc------------cccCCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEEecCCCCCeeeCC-C
Q 042958 887 RH------SLAMILSNN------------AAAKDLGWTRRMNVIKGISDALSYMH--NDCFPPIVHRDISSKNVLLDF-D 945 (1075)
Q Consensus 887 ~~------~l~~~~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivH~Dlk~~Nill~~-~ 945 (1075)
.. .+.++++.. .....+++..+..++.|++.|+.||| +. +|+||||||+||+++. +
T Consensus 92 ~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~ 168 (360)
T 3e3p_A 92 GERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEAD 168 (360)
T ss_dssp CSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTT
T ss_pred ccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCC
Confidence 22 122222221 13456788899999999999999999 77 9999999999999997 8
Q ss_pred CCceEeccccccccCCCCCceeccccccCccCccccccCC-CCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh-
Q 042958 946 NEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN- 1023 (1075)
Q Consensus 946 ~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~- 1023 (1075)
+.+||+|||+++.+.... ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||..............
T Consensus 169 ~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~ 247 (360)
T 3e3p_A 169 GTLKLCDFGSAKKLSPSE-PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRV 247 (360)
T ss_dssp TEEEECCCTTCBCCCTTS-CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred CcEEEeeCCCceecCCCC-CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHH
Confidence 999999999998766433 334567899999999986654 89999999999999999999999975432211000000
Q ss_pred ------hhhhhccC----------CCCCC---CCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 ------IALDEMLD----------PRLPT---PSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ------~~~~~~~~----------~~~~~---~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
........ ...+. ........+.++.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 248 LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 00000000 00000 00011123567999999999999999999999986
No 272
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=3.8e-33 Score=313.84 Aligned_cols=255 Identities=21% Similarity=0.333 Sum_probs=184.1
Q ss_pred HHhcCCCCCceecccCceEEEEEEE--CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC---CcCceeeEEEEeec-
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL--ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI---RHRNIVKFYGFCSH- 885 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~--~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~- 885 (1075)
.+.++|++.+.||+|+||.||+|.. .+|+.||||++........ ....+.+|+.+++.+ +||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG-MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS-CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc-CCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 4567899999999999999999976 4688999999864322111 123455677776666 89999999999862
Q ss_pred ---cccchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 886 ---VRHSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 886 ---~~~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
....+.++++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 87 ~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 87 RTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp ECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred ccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence 2222222222211 123488999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhh-------h
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNI-------A 1025 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~-------~ 1025 (1075)
||+++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||............... .
T Consensus 164 fg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~ 242 (326)
T 1blx_A 164 FGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEED 242 (326)
T ss_dssp CCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred CcccccccCC-CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCccc
Confidence 9999875432 2234467899999999999999999999999999999999999999754321110000000 0
Q ss_pred h-------hhccC-CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1026 L-------DEMLD-PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1026 ~-------~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
. ..... .............+..+.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 243 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0 00000 0000001111233456899999999999999999999985
No 273
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=3.1e-33 Score=314.60 Aligned_cols=242 Identities=23% Similarity=0.381 Sum_probs=182.5
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEE--EEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIV--AVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~v--avK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 889 (1075)
.++|++.+.||+|+||.||+|.. .+|..+ |||++.... .....+.+.+|+++++++ +||||+++++++...+..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 101 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL 101 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeecccc--chHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence 36788999999999999999965 456654 999887532 223356789999999999 999999999999775543
Q ss_pred hhheecCc-------------------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC
Q 042958 890 LAMILSNN-------------------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF 944 (1075)
Q Consensus 890 l~~~~~~~-------------------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 944 (1075)
+.+ ++.. .....+++.+++.++.|+++||+|||+. +|+||||||+||+++.
T Consensus 102 ~lv-~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~ 177 (327)
T 1fvr_A 102 YLA-IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGE 177 (327)
T ss_dssp EEE-ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECG
T ss_pred EEE-EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcC
Confidence 222 2211 1123689999999999999999999999 9999999999999999
Q ss_pred CCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhh
Q 042958 945 DNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLN 1023 (1075)
Q Consensus 945 ~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~ 1023 (1075)
++.+||+|||+++..... .......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.......
T Consensus 178 ~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~------- 249 (327)
T 1fvr_A 178 NYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE------- 249 (327)
T ss_dssp GGCEEECCTTCEESSCEE-CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-------
T ss_pred CCeEEEcccCcCcccccc-ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH-------
Confidence 999999999999753321 12233456889999999988889999999999999999998 999997433211
Q ss_pred hhhhhccCC-CCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1024 IALDEMLDP-RLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1024 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+... ....+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 250 -~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 296 (327)
T 1fvr_A 250 -LYEKLPQGYRLEKP----LNCDDEVYDLMRQCWREKPYERPSFAQILVSLN 296 (327)
T ss_dssp -HHHHGGGTCCCCCC----TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -HHHHhhcCCCCCCC----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 11111111 11111 123346999999999999999999999998774
No 274
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=5.8e-33 Score=308.79 Aligned_cols=241 Identities=25% Similarity=0.387 Sum_probs=177.8
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----- 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 887 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.. .....+.+.+|+.++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH----TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE----EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec----cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 46788999999999999999976 4799999999853 2344578999999999999999999999886532
Q ss_pred -------cchhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceE
Q 042958 888 -------HSLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHV 950 (1075)
Q Consensus 888 -------~~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 950 (1075)
..+.++++... ....+++.+++.++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl 157 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI 157 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence 12222222221 123467888899999999999999999 9999999999999999999999
Q ss_pred eccccccccCCCC--------------CceeccccccCccCccccccC-CCCcccchHhHHHHHHHHHhCCCCCCccCcc
Q 042958 951 SDFGIAKFLKPDS--------------SNWTELAGTYGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISSM 1015 (1075)
Q Consensus 951 ~DfGla~~~~~~~--------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~ 1015 (1075)
+|||.++...... .......||+.|+|||++.+. .++.++||||+|+++|||++ ||....
T Consensus 158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-- 232 (303)
T 1zy4_A 158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-- 232 (303)
T ss_dssp CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH--
T ss_pred eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch--
Confidence 9999998765321 122345689999999998765 68999999999999999998 543111
Q ss_pred ccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1016 SSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
........+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 233 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 233 -----ERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -----HHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -----hHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 011111222222222222233344556899999999999999999999986
No 275
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-33 Score=312.97 Aligned_cols=252 Identities=31% Similarity=0.492 Sum_probs=222.0
Q ss_pred CCccEEEccCCCccC--CCCccccccCCCceeeccc-CcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcce
Q 042958 73 PHLAYLDLWHNQLYG--NIPPQIGNISRLKYLDLSS-NLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNY 149 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 149 (1075)
.+++.|||++|.++| .+|+.++++++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--------- 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH---------
Confidence 467888888888887 7788888888888888874 7777777777777777777777777776655554
Q ss_pred eecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCC-CcCceeccccC
Q 042958 150 LALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLT-NLATLYLHNNS 228 (1075)
Q Consensus 150 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~ 228 (1075)
|.++++|++|+|++|.+++.+|..|..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 121 ---------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 121 ---------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 66677777888888888878889999999999999999999999999999998 99999999999
Q ss_pred CCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCC
Q 042958 229 LFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHS 308 (1075)
Q Consensus 229 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 308 (1075)
+++.+|..+..++ |++|++++|++++..|..|..+++|++|++++|.+++.+|. +..+++|++|++++|++++..|..
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 9989999999997 99999999999999999999999999999999999976665 888999999999999999999999
Q ss_pred CCccccccceecccccccCCCCcccccccccccccccCCc-ccc
Q 042958 309 LGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNK-LSG 351 (1075)
Q Consensus 309 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 351 (1075)
|..+++|++|+|++|++++.+|.. ..+++|+.|++++|. +.|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999988886 889999999999998 554
No 276
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=313.73 Aligned_cols=251 Identities=23% Similarity=0.306 Sum_probs=178.1
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc-----
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR----- 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 887 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++... .....+++.+|++++++++||||+++++++....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 467888999999999999999765 5899999998643 3445678999999999999999999999885432
Q ss_pred --------cchhheecCcc-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-CCCCceEe
Q 042958 888 --------HSLAMILSNNA-------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD-FDNEAHVS 951 (1075)
Q Consensus 888 --------~~l~~~~~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~ 951 (1075)
....++++... ....+++..++.++.|+++||+|||+. +|+||||||+||+++ +++.+||+
T Consensus 87 ~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp ----CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEEC
T ss_pred ccccccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEc
Confidence 11222222211 234688999999999999999999999 999999999999997 56799999
Q ss_pred ccccccccCCCCC---ceeccccccCccCcccccc-CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhh----
Q 042958 952 DFGIAKFLKPDSS---NWTELAGTYGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLN---- 1023 (1075)
Q Consensus 952 DfGla~~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~---- 1023 (1075)
|||.++....... ......++..|+|||.+.+ ..++.++||||||+++|||++|+.||..............
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 243 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPV 243 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCC
Confidence 9999987653321 2334567899999998765 6789999999999999999999999975432211000000
Q ss_pred ---hhhhh------------ccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1024 ---IALDE------------MLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1024 ---~~~~~------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
....+ ...+..+ ........+.++.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 244 VHEEDRQELLSVIPVYIRNDMTEPHKP-LTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp CCHHHHHHHHTTSCHHHHHHTTSCCCC-HHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CchhhhhhhhhcCcccccccccCCCCC-hhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 00000 0000000 00001123456999999999999999999999986
No 277
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=313.33 Aligned_cols=245 Identities=24% Similarity=0.363 Sum_probs=181.1
Q ss_pred HHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchh
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~ 891 (1075)
...++|++.+.||+|+||.||+|.... .||+|++....... ...+.+.+|+.++++++||||+++++++......+.
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~i 106 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE-DQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAI 106 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC-CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH-HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEE
Confidence 446789999999999999999998763 49999987643222 223567889999999999999999999987654322
Q ss_pred heecCc----------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCC
Q 042958 892 MILSNN----------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKP 961 (1075)
Q Consensus 892 ~~~~~~----------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~ 961 (1075)
+ ++.. .....+++.+++.++.|+++||+|||+. +|+||||||+||+++ ++.+||+|||+++....
T Consensus 107 v-~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~ 181 (319)
T 2y4i_B 107 I-TSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGV 181 (319)
T ss_dssp E-CBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----
T ss_pred E-eecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccc
Confidence 2 2111 1133589999999999999999999999 999999999999998 78999999999876532
Q ss_pred CC-----CceeccccccCccCcccccc---------CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhh
Q 042958 962 DS-----SNWTELAGTYGYVAPELAYT---------MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALD 1027 (1075)
Q Consensus 962 ~~-----~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1075)
.. .......|++.|+|||.+.+ ..++.++||||||+++|||++|+.||....... ......
T Consensus 182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~ 256 (319)
T 2y4i_B 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA-----IIWQMG 256 (319)
T ss_dssp ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH-----HHHHHH
T ss_pred ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----HHHHhc
Confidence 21 22234568999999998874 357889999999999999999999997433211 111111
Q ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1028 EMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
....+.... ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 257 ~~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~ 298 (319)
T 2y4i_B 257 TGMKPNLSQ-----IGMGKEISDILLFCWAFEQEERPTFTKLMDMLE 298 (319)
T ss_dssp TTCCCCCCC-----SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHT
T ss_pred cCCCCCCCc-----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 111111111 112234899999999999999999999999885
No 278
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-33 Score=319.39 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=185.0
Q ss_pred hcCCCCCceecccCceEEEEEEE----CCCCEEEEEEccCCCC-CchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccc
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL----ASGEIVAVKKFHSPLP-GEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~----~~g~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 887 (1075)
.++|++.+.||+|+||.||+|+. .+|+.||||+++.... ......+.+.+|+++++++ +||||+++++++....
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36789999999999999999976 4789999999864321 1112235677899999999 6999999999987655
Q ss_pred cchhheecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 888 HSLAMILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 888 ~~l~~~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
..+ ++++... ....+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 133 ~~~-lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLH-LILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEE-EEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEE-EEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 432 2222211 234688999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC-ceeccccccCccCcccccc--CCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCC
Q 042958 959 LKPDSS-NWTELAGTYGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLP 1035 (1075)
Q Consensus 959 ~~~~~~-~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1075)
+..... ......||+.|+|||++.+ ..++.++||||||+++|||++|+.||.......... ...........+
T Consensus 209 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~----~~~~~~~~~~~~ 284 (355)
T 1vzo_A 209 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQA----EISRRILKSEPP 284 (355)
T ss_dssp CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHH----HHHHHHHHCCCC
T ss_pred cccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHH----HHHHHHhccCCC
Confidence 643322 2334679999999999885 347899999999999999999999997433221111 111111111222
Q ss_pred CCCcCcHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHhh
Q 042958 1036 TPSCIVQDKLISIVEVAISCLDENPESRP-----TMPKVSQL 1072 (1075)
Q Consensus 1036 ~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~~ 1072 (1075)
.+ ...+..+.+++.+||+.||++|| +++|+++.
T Consensus 285 ~~----~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 285 YP----QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp CC----TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred CC----cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 22 22334689999999999999999 99999864
No 279
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.98 E-value=1.1e-32 Score=336.58 Aligned_cols=247 Identities=23% Similarity=0.375 Sum_probs=187.6
Q ss_pred HHhcCCCCCceecccCceEEEEEEEC----CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccc
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAELA----SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVR 887 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 887 (1075)
...++|++.+.||+|+||.||+|... .+..||||++... ......+.+.+|+.++++++||||+++++++.+..
T Consensus 387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~ 464 (656)
T 2j0j_A 387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVITENP 464 (656)
T ss_dssp CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST--TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCc
Confidence 34567888899999999999999764 2467999998754 23344678999999999999999999999986544
Q ss_pred cchhheecCcc--------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 888 HSLAMILSNNA--------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 888 ~~l~~~~~~~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
..+.+.+...+ ....+++..++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 465 ~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 465 VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred eEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 33333222211 133588999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC-ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 960 KPDSS-NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 960 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
..... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||....... ........ ...+.+
T Consensus 542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-----~~~~i~~~--~~~~~~ 614 (656)
T 2j0j_A 542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND-----VIGRIENG--ERLPMP 614 (656)
T ss_dssp CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-----HHHHHHHT--CCCCCC
T ss_pred CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-----HHHHHHcC--CCCCCC
Confidence 54322 2233456789999999998899999999999999999997 999987433211 11111111 112222
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
...+..+.+++.+||+.||++|||++||++.|+
T Consensus 615 ----~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~ 647 (656)
T 2j0j_A 615 ----PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 647 (656)
T ss_dssp ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ----ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 223446999999999999999999999999874
No 280
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-31 Score=302.17 Aligned_cols=247 Identities=23% Similarity=0.330 Sum_probs=121.2
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
.++++++++++.++ .+|..+. ++|++|+|++|.+++..+..|+++++|++|+|++|++++..|..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45667777766665 4555443 46666666666666555556666666666666666666555555555555555555
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
++|.++.+....+ ++|++|++++|++++..+..|.++++|++|++++|.++. .+.
T Consensus 108 s~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~ 162 (330)
T 1xku_A 108 SKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGI 162 (330)
T ss_dssp CSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGB
T ss_pred CCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCc
Confidence 5555554322211 345555555555544444444444444444444444431 012
Q ss_pred CcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcc
Q 042958 233 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNL 312 (1075)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 312 (1075)
.+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..|..|..+++|+.|++++|++++..+..|..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 23333444444444444444442 222221 344444444444444444444444444444444444444444444444
Q ss_pred ccccceecccccccCCCCcccccccccccccccCCcccc
Q 042958 313 TNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSG 351 (1075)
Q Consensus 313 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 351 (1075)
++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 44444444444444 334444444444444444444443
No 281
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.98 E-value=2.1e-32 Score=309.53 Aligned_cols=248 Identities=18% Similarity=0.262 Sum_probs=185.2
Q ss_pred hcCCCCCceecccCceEEEEEEE--CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc------eeeEEEEeec
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL--ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN------IVKFYGFCSH 885 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~--~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~ 885 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|+++++.++|++ ++++++++..
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 46889999999999999999965 36889999998642 334577889999999997765 9999999877
Q ss_pred cccchhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC------------
Q 042958 886 VRHSLAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF------------ 944 (1075)
Q Consensus 886 ~~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~------------ 944 (1075)
.+..+.++.... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 89 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~ 165 (339)
T 1z57_A 89 HGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIK 165 (339)
T ss_dssp TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----
T ss_pred CCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccc
Confidence 654322221111 1123578999999999999999999999 9999999999999987
Q ss_pred -------CCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 945 -------DNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 945 -------~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
++.+||+|||.++..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||........
T Consensus 166 ~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 242 (339)
T 1z57_A 166 RDERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH 242 (339)
T ss_dssp CEEEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH
T ss_pred cccccccCCCceEeeCcccccCccc---cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH
Confidence 668999999999875432 3346789999999999999999999999999999999999999975432110
Q ss_pred chhhhh-------hhhhhc-------------------------cCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCC
Q 042958 1018 SSLNLN-------IALDEM-------------------------LDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPT 1065 (1075)
Q Consensus 1018 ~~~~~~-------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 1065 (1075)
...... ...... ...............+..+.+++.+||+.||++|||
T Consensus 243 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 322 (339)
T 1z57_A 243 LAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT 322 (339)
T ss_dssp HHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred HHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccC
Confidence 000000 000000 000000001112345678999999999999999999
Q ss_pred HHHHHh
Q 042958 1066 MPKVSQ 1071 (1075)
Q Consensus 1066 ~~evl~ 1071 (1075)
++|+++
T Consensus 323 ~~ell~ 328 (339)
T 1z57_A 323 LREALK 328 (339)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 999985
No 282
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.2e-31 Score=301.79 Aligned_cols=296 Identities=24% Similarity=0.332 Sum_probs=186.9
Q ss_pred CCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEc
Q 042958 97 SRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHL 176 (1075)
Q Consensus 97 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (1075)
.++++++++++.++ .+|..+. +.|++|+|++|+++ ++.+..|+++++|++|+|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~------------------------~~~~~~~~~l~~L~~L~L 83 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT------------------------EIKDGDFKNLKNLHTLIL 83 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC------------------------CBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC------------------------EeChhhhccCCCCCEEEC
Confidence 35666666666655 4444332 34555555555554 444445677777777777
Q ss_pred CCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC-
Q 042958 177 YDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG- 255 (1075)
Q Consensus 177 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 255 (1075)
++|++++..|..|+.+++|++|+|++|+++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 84 INNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 777777776777777777777777777777 4555444 678888888888887777778888888888888888863
Q ss_pred -ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccc
Q 042958 256 -SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIG 334 (1075)
Q Consensus 256 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 334 (1075)
..+..+.++++|++|++++|.++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 556667777777777777777774 444332 5677777777777666666666666666666666666655555666
Q ss_pred cccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeE
Q 042958 335 NLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATL 414 (1075)
Q Consensus 335 ~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 414 (1075)
.+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..|.... .....+.|+.|
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l 298 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV 298 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce
Confidence 6666666666666665 4555555555666666666655444444333210 00012456666
Q ss_pred Eeecccccc--ccccccccccccceecccccc
Q 042958 415 DLYDNSLSG--SIPSEFGNLRSLSTLSLGYNK 444 (1075)
Q Consensus 415 ~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 444 (1075)
++++|.+.. +.|..|..+.+|+.++|++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 666666542 455667777777777777664
No 283
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.98 E-value=2.1e-33 Score=314.65 Aligned_cols=237 Identities=20% Similarity=0.311 Sum_probs=184.4
Q ss_pred HHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCch---hHHHHHHHHHHHHhcCC--cCceeeEEEEeec
Q 042958 812 RATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEM---TFQQEFLNEVKALTEIR--HRNIVKFYGFCSH 885 (1075)
Q Consensus 812 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~ 885 (1075)
...++|++.+.||+|+||.||+|.. .+++.||||++........ ...+.+.+|+.++++++ ||||+++++++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 3457899999999999999999965 5789999999865432211 11245678999999996 5999999999987
Q ss_pred cccchhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-CCCCceEecccc
Q 042958 886 VRHSLAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD-FDNEAHVSDFGI 955 (1075)
Q Consensus 886 ~~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfGl 955 (1075)
.+..+.++.... .....+++..++.++.|+++||+|||+. +|+||||||+||+++ .++.+||+|||+
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~ 196 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGS 196 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred CCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence 655433322221 1235688999999999999999999999 999999999999999 778999999999
Q ss_pred ccccCCCCCceeccccccCccCccccccCCC-CcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 956 AKFLKPDSSNWTELAGTYGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 956 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||..... ......
T Consensus 197 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~--------------~~~~~~ 260 (320)
T 3a99_A 197 GALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE--------------IIRGQV 260 (320)
T ss_dssp CEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH--------------HHHCCC
T ss_pred ccccccc--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh--------------hhcccc
Confidence 9876533 2344679999999999887766 6889999999999999999999863211 001111
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+. ..+.++.+++.+||+.||++|||++||++
T Consensus 261 ~~~~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 261 FFRQ----RVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CCSS----CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccc----cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111 12345899999999999999999999986
No 284
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.98 E-value=2.9e-32 Score=305.55 Aligned_cols=244 Identities=22% Similarity=0.304 Sum_probs=168.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
.++|+..+.||+|+||.||+|... +|+.||||++..... .....+.+.++..+++.++||||+++++++...+..+.+
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN-KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC-HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence 467888899999999999999765 799999999976432 222334455566678888999999999999876543222
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCC
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHN-DCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPD 962 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~ 962 (1075)
++... ....+++..+..++.|+++||+|||+ . +|+||||||+||+++.++.+||+|||++......
T Consensus 103 -~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 103 -MELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp -ECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred -EeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 22211 13568999999999999999999998 5 8999999999999999999999999999876543
Q ss_pred CCceeccccccCccCccccc-----cCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCC
Q 042958 963 SSNWTELAGTYGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTP 1037 (1075)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1075)
. ......|++.|+|||++. +..++.++||||||+++|||++|+.||....... ...........+..+..
T Consensus 179 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~~ 253 (318)
T 2dyl_A 179 K-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDF----EVLTKVLQEEPPLLPGH 253 (318)
T ss_dssp ---------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHH----HHHHHHHHSCCCCCCSS
T ss_pred c-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccH----HHHHHHhccCCCCCCcc
Confidence 2 233457899999999984 4568899999999999999999999997432210 00011111111122211
Q ss_pred CcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1038 SCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1038 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
. ..+..+.+++.+||+.||.+|||++|+++
T Consensus 254 ~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 254 M----GFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp S----CCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred C----CCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1 22346899999999999999999999986
No 285
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.98 E-value=1.3e-32 Score=315.95 Aligned_cols=249 Identities=19% Similarity=0.267 Sum_probs=183.2
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-----------cCceeeEEE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-----------HRNIVKFYG 881 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~ 881 (1075)
.++|++.+.||+|+||.||+|.. .+++.||||++.. .....+.+.+|++++++++ ||||+++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 93 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG----DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD 93 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS----CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC----CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence 46799999999999999999965 5799999999863 2334577889999999886 899999999
Q ss_pred Eeecccc---chhheecCcc----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-----
Q 042958 882 FCSHVRH---SLAMILSNNA----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD----- 943 (1075)
Q Consensus 882 ~~~~~~~---~l~~~~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~----- 943 (1075)
++..... .+.++++... ....+++..+..++.||+.||+|||+.+ +|+||||||+||+++
T Consensus 94 ~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~ 171 (373)
T 1q8y_A 94 HFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSP 171 (373)
T ss_dssp EEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETT
T ss_pred HhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCC
Confidence 9875431 2222222211 1345899999999999999999999953 899999999999994
Q ss_pred -CCCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchh-h
Q 042958 944 -FDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSL-N 1021 (1075)
Q Consensus 944 -~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~-~ 1021 (1075)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++||||||+++|||++|+.||........... .
T Consensus 172 ~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~ 248 (373)
T 1q8y_A 172 ENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDD 248 (373)
T ss_dssp TTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHH
T ss_pred cCcceEEEcccccccccCCC---CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHH
Confidence 4447999999999876532 3345789999999999999999999999999999999999999975432111000 0
Q ss_pred hhhhhhh------------------ccCC-----CCC------------CCCcCcHHHHHHHHHHHHHccCCCCCCCCCH
Q 042958 1022 LNIALDE------------------MLDP-----RLP------------TPSCIVQDKLISIVEVAISCLDENPESRPTM 1066 (1075)
Q Consensus 1022 ~~~~~~~------------------~~~~-----~~~------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1066 (1075)
....... +... ... .........+.++.+++.+||+.||++|||+
T Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 328 (373)
T 1q8y_A 249 HIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADA 328 (373)
T ss_dssp HHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCH
T ss_pred HHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCH
Confidence 0000000 0000 000 0011235667789999999999999999999
Q ss_pred HHHHh
Q 042958 1067 PKVSQ 1071 (1075)
Q Consensus 1067 ~evl~ 1071 (1075)
+|+++
T Consensus 329 ~ell~ 333 (373)
T 1q8y_A 329 GGLVN 333 (373)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99986
No 286
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=307.72 Aligned_cols=239 Identities=21% Similarity=0.313 Sum_probs=177.5
Q ss_pred HHHHhcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCch---hHHHHHHHHHHHHhcC----CcCceeeEEE
Q 042958 810 IIRATNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEM---TFQQEFLNEVKALTEI----RHRNIVKFYG 881 (1075)
Q Consensus 810 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l----~h~niv~l~~ 881 (1075)
.....++|++.+.||+|+||.||+|.. .+++.||||++........ .....+.+|+.+++++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 344567899999999999999999965 4789999999975432211 1223466789999888 8999999999
Q ss_pred EeeccccchhheecCc---------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC-CCCCceEe
Q 042958 882 FCSHVRHSLAMILSNN---------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD-FDNEAHVS 951 (1075)
Q Consensus 882 ~~~~~~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~ 951 (1075)
++...+..+.++.... .....+++..++.++.|+++||+|||+. +|+||||||+||+++ .++.+||+
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEEC
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEE
Confidence 9876554433322211 1234589999999999999999999999 999999999999999 88999999
Q ss_pred ccccccccCCCCCceeccccccCccCccccccCCCC-cccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhcc
Q 042958 952 DFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVT-EKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEML 1030 (1075)
Q Consensus 952 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1030 (1075)
|||+++..... ......|++.|+|||++.+..+. .++||||+|+++|||++|+.||..... ..
T Consensus 183 dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--------------~~ 246 (312)
T 2iwi_A 183 DFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE--------------IL 246 (312)
T ss_dssp CCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH--------------HH
T ss_pred EcchhhhcccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH--------------Hh
Confidence 99999876543 23456789999999998877664 589999999999999999999863211 01
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1031 DPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
......+. ..+..+.+++.+||+.||++|||++|+++
T Consensus 247 ~~~~~~~~----~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 247 EAELHFPA----HVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HTCCCCCT----TSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred hhccCCcc----cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111111 22345899999999999999999999987
No 287
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.98 E-value=4.4e-32 Score=311.77 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=154.6
Q ss_pred HhcCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cC-----ceeeEEEEeec
Q 042958 813 ATNDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HR-----NIVKFYGFCSH 885 (1075)
Q Consensus 813 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~ 885 (1075)
..++|++.+.||+|+||.||+|... +++.||||++.. ......++..|+++++.++ |+ +|+++++++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~ 127 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN----KKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF 127 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS----SHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec----cHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence 3578999999999999999999654 788999999863 2334567788999888884 44 49999998876
Q ss_pred cccchhhe-ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeC--CCCCceEeccc
Q 042958 886 VRHSLAMI-LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLD--FDNEAHVSDFG 954 (1075)
Q Consensus 886 ~~~~l~~~-~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~--~~~~~kl~DfG 954 (1075)
....+.++ +... .....+++..+..++.|++.||.|||.+ ..+|+||||||+||+++ .++.+||+|||
T Consensus 128 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG 206 (382)
T 2vx3_A 128 RNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFG 206 (382)
T ss_dssp TTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred CCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEecc
Confidence 55432222 1111 1124589999999999999999999953 12899999999999995 47789999999
Q ss_pred cccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCcc
Q 042958 955 IAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFI 1012 (1075)
Q Consensus 955 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~ 1012 (1075)
+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 207 ~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 207 SSCQLGQR---IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TCEETTCC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred Cceecccc---cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99876532 33467899999999999999999999999999999999999999754
No 288
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.97 E-value=5e-32 Score=308.70 Aligned_cols=248 Identities=18% Similarity=0.271 Sum_probs=183.9
Q ss_pred hcCCCCCceecccCceEEEEEEEC-CC-CEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc------eeeEEEEeec
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA-SG-EIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN------IVKFYGFCSH 885 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g-~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~ 885 (1075)
.++|++.+.||+|+||.||+|... ++ +.||||++... ....+.+.+|+.+++.++|++ ++.+++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 468999999999999999999664 44 68999998642 334577889999999998766 8999998876
Q ss_pred cccchhhe-ecCc--------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeee--------------
Q 042958 886 VRHSLAMI-LSNN--------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLL-------------- 942 (1075)
Q Consensus 886 ~~~~l~~~-~~~~--------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill-------------- 942 (1075)
....+.++ +... .....+++.+++.++.||++||+|||+. +|+||||||+||++
T Consensus 94 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 170 (355)
T 2eu9_A 94 HGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKS 170 (355)
T ss_dssp TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-C
T ss_pred CCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccc
Confidence 55432222 1111 1124689999999999999999999999 99999999999999
Q ss_pred -----CCCCCceEeccccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCcccc
Q 042958 943 -----DFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSS 1017 (1075)
Q Consensus 943 -----~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 1017 (1075)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||........
T Consensus 171 ~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 247 (355)
T 2eu9_A 171 CEEKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREH 247 (355)
T ss_dssp CCEEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred ccccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 56789999999999875432 3446799999999999999999999999999999999999999975332110
Q ss_pred chhhhh-------hhhhh------ccC-------------------CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCC
Q 042958 1018 SSLNLN-------IALDE------MLD-------------------PRLPTPSCIVQDKLISIVEVAISCLDENPESRPT 1065 (1075)
Q Consensus 1018 ~~~~~~-------~~~~~------~~~-------------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 1065 (1075)
...... ..... ... ............+..++.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 327 (355)
T 2eu9_A 248 LVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT 327 (355)
T ss_dssp HHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred HHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC
Confidence 000000 00000 000 0000000112234567999999999999999999
Q ss_pred HHHHHh
Q 042958 1066 MPKVSQ 1071 (1075)
Q Consensus 1066 ~~evl~ 1071 (1075)
++|+++
T Consensus 328 ~~e~l~ 333 (355)
T 2eu9_A 328 LAEALL 333 (355)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 999985
No 289
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.2e-32 Score=316.55 Aligned_cols=239 Identities=22% Similarity=0.295 Sum_probs=171.2
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchhh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~~ 892 (1075)
..+|+..+.||+|+||+||.....+|+.||||++..... ..+.+|+++++++ +|||||++++++.+....+.+
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv 96 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIA 96 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEE
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEE
Confidence 456888899999999997766667799999999865321 2356899999999 899999999998775543222
Q ss_pred eecCcc---------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC-----CCceEeccccccc
Q 042958 893 ILSNNA---------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD-----NEAHVSDFGIAKF 958 (1075)
Q Consensus 893 ~~~~~~---------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-----~~~kl~DfGla~~ 958 (1075)
++... ......+.++..++.||++||+|||+. +|+||||||+||+++.+ ..+||+|||+|+.
T Consensus 97 -~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~ 172 (432)
T 3p23_A 97 -IELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172 (432)
T ss_dssp -EECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred -EECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence 21111 112244455678999999999999999 99999999999999532 3578999999987
Q ss_pred cCCCC---CceeccccccCccCccccc---cCCCCcccchHhHHHHHHHHHh-CCCCCCccCccccchhhhhhhhhhccC
Q 042958 959 LKPDS---SNWTELAGTYGYVAPELAY---TMKVTEKCDVYSFGVLALEVIK-GKHPRDFISSMSSSSLNLNIALDEMLD 1031 (1075)
Q Consensus 959 ~~~~~---~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1075)
..... .......||+.|+|||++. ...++.++||||+||++|||++ |+.||...... .......
T Consensus 173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---------~~~~~~~ 243 (432)
T 3p23_A 173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---------QANILLG 243 (432)
T ss_dssp C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---------HHHHHTT
T ss_pred ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---------HHHHHhc
Confidence 65432 2234467999999999987 4567889999999999999999 99998532110 0111111
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1032 PRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1032 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
................+.+++.+||+.||++|||++||++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 244 ACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp CCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 1111111112344556889999999999999999999985
No 290
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.97 E-value=4.6e-32 Score=305.67 Aligned_cols=243 Identities=19% Similarity=0.249 Sum_probs=156.3
Q ss_pred HhcCCCCCc-eecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc---c
Q 042958 813 ATNDFDDEH-CIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV---R 887 (1075)
Q Consensus 813 ~~~~~~~~~-~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---~ 887 (1075)
..++|.+.+ .||+|+||.||+|... +|+.||||++... .. ...+....++.++||||+++++++... .
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~---~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~ 98 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PK---ARQEVDHHWQASGGPHIVCILDVYENMHHGK 98 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HH---HHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HH---HHHHHHHHHHhcCCCChHHHHHHHhhccCCC
Confidence 356788854 6999999999999665 7999999998642 11 122223345667999999999998652 2
Q ss_pred cchhheecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC---CCceEecc
Q 042958 888 HSLAMILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD---NEAHVSDF 953 (1075)
Q Consensus 888 ~~l~~~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~Df 953 (1075)
..+.++++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.+ +.+||+||
T Consensus 99 ~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Df 175 (336)
T 3fhr_A 99 RCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDF 175 (336)
T ss_dssp EEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred ceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecc
Confidence 22222222211 124689999999999999999999999 99999999999999864 45999999
Q ss_pred ccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCC
Q 042958 954 GIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPR 1033 (1075)
Q Consensus 954 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
|+++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||........... ....+....
T Consensus 176 g~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~----~~~~~~~~~ 249 (336)
T 3fhr_A 176 GFAKETTQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG----MKRRIRLGQ 249 (336)
T ss_dssp TTCEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred ccceecccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh----HHHhhhccc
Confidence 999876532 23445789999999999888899999999999999999999999964432211100 011111111
Q ss_pred CCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1034 LPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1034 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
...+.......+..+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 250 YGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11111112234456999999999999999999999986
No 291
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.97 E-value=4.3e-32 Score=316.67 Aligned_cols=239 Identities=25% Similarity=0.347 Sum_probs=170.8
Q ss_pred CCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchhhee
Q 042958 816 DFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLAMIL 894 (1075)
Q Consensus 816 ~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~~~~ 894 (1075)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++......+ +++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~-lv~ 88 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLY-IAL 88 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEE-EEE
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEE-EEE
Confidence 34456789999999998887778999999998532 235678999999886 8999999999987655432 222
Q ss_pred cCccc--------cC-------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCC-------------C
Q 042958 895 SNNAA--------AK-------DLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFD-------------N 946 (1075)
Q Consensus 895 ~~~~~--------~~-------~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-------------~ 946 (1075)
+...+ .. ...+..++.++.||+.||+|||+. +|+||||||+||+++.+ +
T Consensus 89 E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 89 ELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred ecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCce
Confidence 21111 00 012234567999999999999999 99999999999999754 4
Q ss_pred CceEeccccccccCCCCCc----eeccccccCccCcccccc-------CCCCcccchHhHHHHHHHHHh-CCCCCCccCc
Q 042958 947 EAHVSDFGIAKFLKPDSSN----WTELAGTYGYVAPELAYT-------MKVTEKCDVYSFGVLALEVIK-GKHPRDFISS 1014 (1075)
Q Consensus 947 ~~kl~DfGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~ 1014 (1075)
.+||+|||+++.+...... .....||+.|+|||++.+ ..++.++||||+||++|||++ |+.||.....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 7999999999987654322 234579999999999875 568999999999999999999 9999863221
Q ss_pred cccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1015 MSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
.. ............ .........+.++.+++.+||+.||++|||+.||++
T Consensus 246 ~~------~~i~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RE------SNIIRGIFSLDE-MKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HH------HHHHHTCCCCCC-CTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hH------HHHhcCCCCccc-ccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 10 111111111110 011123456678999999999999999999999986
No 292
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.97 E-value=1e-32 Score=319.63 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=168.7
Q ss_pred hcCCCCCceecccCceEEEEEE-ECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCc-Cceee---------EEEE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAE-LASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRH-RNIVK---------FYGF 882 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~-~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~---------l~~~ 882 (1075)
...|...+.||+|+||.||+|. ..+|+.||||++...........+.+.+|+.+++.++| ++... ..+.
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3456777899999999999996 45799999999875443333335779999999999977 22111 1111
Q ss_pred ------------eeccc---c-chhheecC---------------ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 042958 883 ------------CSHVR---H-SLAMILSN---------------NAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIV 931 (1075)
Q Consensus 883 ------------~~~~~---~-~l~~~~~~---------------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 931 (1075)
+.... . .+.+++.. ......+++..++.++.|+++||+|||+. +|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 11101 0 00000000 11133467888999999999999999999 999
Q ss_pred EecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCcccc----------ccCCCCcccchHhHHHHHHH
Q 042958 932 HRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELA----------YTMKVTEKCDVYSFGVLALE 1001 (1075)
Q Consensus 932 H~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s~G~vl~e 1001 (1075)
||||||+||+++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||++||
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~e 309 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYW 309 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999875432 445577 999999998 55668899999999999999
Q ss_pred HHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1002 VIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1002 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
|++|+.||........ ......... ..+..+.+++.+||+.||++||++.|+++
T Consensus 310 lltg~~Pf~~~~~~~~--------~~~~~~~~~--------~~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 310 IWCADLPNTDDAALGG--------SEWIFRSCK--------NIPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHSSCCCCTTGGGSC--------SGGGGSSCC--------CCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHCCCCCCCcchhhh--------HHHHHhhcc--------cCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 9999999974332111 111111111 11245999999999999999999988865
No 293
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.97 E-value=2.7e-32 Score=325.60 Aligned_cols=251 Identities=25% Similarity=0.314 Sum_probs=183.9
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecc-----c
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHV-----R 887 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~ 887 (1075)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++++++||||+++++++... .
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~ 90 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN 90 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence 47899999999999999999965 579999999987542 334467899999999999999999999987541 1
Q ss_pred cchhheecCc------------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC---ceEec
Q 042958 888 HSLAMILSNN------------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE---AHVSD 952 (1075)
Q Consensus 888 ~~l~~~~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~D 952 (1075)
....++++.. .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|
T Consensus 91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~D 167 (676)
T 3qa8_A 91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIID 167 (676)
T ss_dssp SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcc
Confidence 2222222221 1223588899999999999999999999 9999999999999997765 89999
Q ss_pred cccccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccc-cch-----hhhhhhh
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMS-SSS-----LNLNIAL 1026 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~-~~~-----~~~~~~~ 1026 (1075)
||.++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||....... +.. .......
T Consensus 168 FG~a~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~ 246 (676)
T 3qa8_A 168 LGYAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVV 246 (676)
T ss_dssp CCCCCBTTSCC-CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCS
T ss_pred ccccccccccc-ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhh
Confidence 99998765432 3345689999999999999999999999999999999999999996421110 000 0000000
Q ss_pred ------hhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 042958 1027 ------DEMLDPRLPTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVS 1070 (1075)
Q Consensus 1027 ------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 1070 (1075)
........+.+.......+..+.+++.+||+.||++|||++|++
T Consensus 247 ~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 247 YDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp CCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred hhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 00111222333334455677899999999999999999998754
No 294
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-34 Score=342.16 Aligned_cols=378 Identities=22% Similarity=0.169 Sum_probs=214.0
Q ss_pred ccCcEEEccCCCCCCCcCCC-CCccccccceecccccccCC----CCcccccccccccccccCCcccccCCCcC-CCCC-
Q 042958 289 RSLSMLNLGYNKLNGIIPHS-LGNLTNLATLYIHNNSLSGS----IPSEIGNLRSLSNLGLSGNKLSGSIPPSL-GYLS- 361 (1075)
Q Consensus 289 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~l-~~l~- 361 (1075)
++|++|+|++|+++...... +..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56778888888877543332 66777888888888877632 34556666777777777777764322222 1233
Q ss_pred ---CcceeeccccccCC----CCccccCCCcccceeeeccccccccCChhhcc-----CCCCCeEEeecccccccc----
Q 042958 362 ---NLATLYLYSNSLFD----SIPSELGNLRSLSMLSLGYNKLSGSIPHSLGN-----LTNLATLDLYDNSLSGSI---- 425 (1075)
Q Consensus 362 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~---- 425 (1075)
+|++|++++|.+.. .++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 56777777776653 34556666666666666666665443333322 345666666666666432
Q ss_pred ccccccccccceecccccccccCCCCCCcc-----ccccccccccCCccccC----CCccccCcCCCCEEeCCCCcccCC
Q 042958 426 PSEFGNLRSLSTLSLGYNKLSGSIPHSLGN-----LTNLDALYLYDNSLSGS----IPGEIGNLRSISNLALNNNKLSGS 496 (1075)
Q Consensus 426 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ 496 (1075)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 334455566666666666655433322221 33555555555555532 234444455555555555554432
Q ss_pred C-----cccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhhhhh
Q 042958 497 I-----PQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLN 571 (1075)
Q Consensus 497 ~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~ 571 (1075)
. +..+..+++|+.|++++|.+++.... .++..+.+++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------------------------~l~~~l~~~~ 284 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------------------------DLCRVLRAKE 284 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------------------------HHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------------------------HHHHHHhhCC
Confidence 1 11122344455555555444322000 0222233333
Q ss_pred HhHHHhhcccccccccccccC-----cccccceeecCCCcccCc----ccccccccccceEEEccccccccccchhccc-
Q 042958 572 FLIKLILAQNQLSGQLSPKLG-----SLAQLEHLDLSSNRLSNS----IPKSFGNLVKLHYLNLSNNQFSRGIPIKLEE- 641 (1075)
Q Consensus 572 ~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 641 (1075)
.|+.|++++|.+++..+..+. ..++|++|+|++|.+++. +|..+..+++|++|+|++|++++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 333333333333322222221 225788888888888764 4566667788888888888887665555543
Q ss_pred ----ccccceeeeccccccC----chhhhhccccccceeecCCCccccCChhhhc-----ccccccEEeecCCccC
Q 042958 642 ----LIHLSELDLSHNFLRE----AIPSQICIMQSLENLNLSHNSLVGLIPSCFE-----KMHGLLRIDISYNELQ 704 (1075)
Q Consensus 642 ----l~~L~~L~ls~N~l~~----~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~-----~~~~l~~l~~s~N~~~ 704 (1075)
.++|++|+|++|++++ .+|..+..+++|+.|++++|++++.....+. ....|+.|++.++.+.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 5678888888888876 6777777788888888888888755333332 1234666766666554
No 295
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.1e-35 Score=344.90 Aligned_cols=390 Identities=22% Similarity=0.155 Sum_probs=289.7
Q ss_pred ccccccccccccCcCCCCc-ccCCCccCcEEEccCCCCCCC----cCCCCCccccccceecccccccCCCCcccc-ccc-
Q 042958 265 TNLATLYLYENSLSGSIPS-EFGNLRSLSMLNLGYNKLNGI----IPHSLGNLTNLATLYIHNNSLSGSIPSEIG-NLR- 337 (1075)
Q Consensus 265 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~- 337 (1075)
++|++|++++|+++..... .+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5799999999999854433 377899999999999999853 456777889999999999999865444443 344
Q ss_pred ---ccccccccCCcccc----cCCCcCCCCCCcceeeccccccCCCCccccC-----CCcccceeeeccccccccC----
Q 042958 338 ---SLSNLGLSGNKLSG----SIPPSLGYLSNLATLYLYSNSLFDSIPSELG-----NLRSLSMLSLGYNKLSGSI---- 401 (1075)
Q Consensus 338 ---~L~~L~l~~N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~---- 401 (1075)
+|++|++++|+++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999984 4588899999999999999998655444333 3567999999999998744
Q ss_pred ChhhccCCCCCeEEeecccccccccccccc-----ccccceecccccccccC----CCCCCccccccccccccCCccccC
Q 042958 402 PHSLGNLTNLATLDLYDNSLSGSIPSEFGN-----LRSLSTLSLGYNKLSGS----IPHSLGNLTNLDALYLYDNSLSGS 472 (1075)
Q Consensus 402 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ 472 (1075)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 667778899999999999998765555543 56999999999999864 577788899999999999999864
Q ss_pred C-----CccccCcCCCCEEeCCCCcccCC----CcccccCCCccceeeccCCCCCCCCCccccCcccccccccccccccc
Q 042958 473 I-----PGEIGNLRSISNLALNNNKLSGS----IPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSG 543 (1075)
Q Consensus 473 ~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 543 (1075)
. +..+..+++|++|++++|.++.. ++..+..+++|+.|++++|.+++..+..+...- .
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------------~ 309 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-------------L 309 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-------------T
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-------------c
Confidence 3 33344689999999999999864 577788899999999999988654433332210 0
Q ss_pred ccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccc-----c
Q 042958 544 SIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGN-----L 618 (1075)
Q Consensus 544 ~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l 618 (1075)
.-++++++|++++|.+++..... ++..+..+++|++|||++|+|++..+..+.. .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSH--------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred cCCccceeeEcCCCCCchHHHHH--------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 01235666666666665432211 2334556678888888888887655554443 5
Q ss_pred ccceEEEcccccccc----ccchhcccccccceeeeccccccCchhhhhcc-----ccccceeecCCCccccCChhhh
Q 042958 619 VKLHYLNLSNNQFSR----GIPIKLEELIHLSELDLSHNFLREAIPSQICI-----MQSLENLNLSHNSLVGLIPSCF 687 (1075)
Q Consensus 619 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-----~~~L~~L~ls~N~l~~~~p~~~ 687 (1075)
++|++|+|++|++++ .+|..+..+++|++|||++|++++.....+.. ..+|+.|++.++.+....+..+
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 688888888888875 67778888888888888888887653333321 2357777777776665544443
No 296
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.97 E-value=7.9e-31 Score=287.95 Aligned_cols=223 Identities=12% Similarity=0.064 Sum_probs=168.3
Q ss_pred cCCCCCceecccCceEEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhhe
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAMI 893 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~~ 893 (1075)
++|++.+.||+|+||.||+|... +|+.||||++...........+.+.+|+..+++++||||+++++++...+..+ ++
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~-lv 109 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGL-VV 109 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE-EE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEE-EE
Confidence 67999999999999999999665 58999999998765555556688999999999999999999999998765432 22
Q ss_pred ecCccc-------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCce
Q 042958 894 LSNNAA-------AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNW 966 (1075)
Q Consensus 894 ~~~~~~-------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 966 (1075)
++...+ .......+..+++.|+++||+|||+. +|+||||||+||+++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~------------ 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA------------ 174 (286)
T ss_dssp EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC------------
T ss_pred EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc------------
Confidence 222111 11235567888999999999999999 99999999999999999999998543
Q ss_pred eccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHH
Q 042958 967 TELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLI 1046 (1075)
Q Consensus 967 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1075)
|++ .++.++||||||+++|||++|+.||............ ........+.+.......+.
T Consensus 175 --------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 234 (286)
T 3uqc_A 175 --------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA-----ERDTAGQPIEPADIDRDIPF 234 (286)
T ss_dssp --------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEEC-----CBCTTSCBCCHHHHCTTSCH
T ss_pred --------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHH-----HHHhccCCCChhhcccCCCH
Confidence 333 3688999999999999999999999754332111000 00111111111111122345
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHhhhc
Q 042958 1047 SIVEVAISCLDENPESRPTMPKVSQLLK 1074 (1075)
Q Consensus 1047 ~l~~li~~cl~~dP~~RPs~~evl~~L~ 1074 (1075)
.+.+++.+||+.||++| |++|+++.|+
T Consensus 235 ~l~~li~~~l~~dP~~R-s~~el~~~L~ 261 (286)
T 3uqc_A 235 QISAVAARSVQGDGGIR-SASTLLNLMQ 261 (286)
T ss_dssp HHHHHHHHHHCTTSSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHcccCCccC-CHHHHHHHHH
Confidence 69999999999999999 9999999874
No 297
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.2e-30 Score=322.25 Aligned_cols=230 Identities=24% Similarity=0.331 Sum_probs=179.8
Q ss_pred hcCCCCCceecccCceEEEEEEEC--CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEeecccc---
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELA--SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRH--- 888 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~--~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 888 (1075)
.++|++.+.||+|+||.||+|... +|+.||||++... ......+.+.+|++++++++||||+++++++.....
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 156 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS--GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD 156 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS--CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc--CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence 368999999999999999999765 6899999998653 334456788999999999999999999999986554
Q ss_pred ---chhheecCcc-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 889 ---SLAMILSNNA-----AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 889 ---~l~~~~~~~~-----~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
++++.+.... ....+++.+++.++.||++||+|||+. +|+||||||+||+++.+ .+||+|||+++...
T Consensus 157 ~~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~ 232 (681)
T 2pzi_A 157 PVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRIN 232 (681)
T ss_dssp EEEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETT
T ss_pred ceeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhcc
Confidence 2222221111 123689999999999999999999999 99999999999999985 99999999998765
Q ss_pred CCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcC
Q 042958 961 PDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCI 1040 (1075)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1075)
.. ....||+.|+|||++.+. ++.++|||||||++|||++|..||...... ..+. ...
T Consensus 233 ~~----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~-----------------~~~~-~~~ 289 (681)
T 2pzi_A 233 SF----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVD-----------------GLPE-DDP 289 (681)
T ss_dssp CC----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECS-----------------SCCT-TCH
T ss_pred cC----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccc-----------------cccc-ccc
Confidence 43 345799999999998765 488999999999999999999887531110 0010 011
Q ss_pred cHHHHHHHHHHHHHccCCCCCCCCC-HHHHHhh
Q 042958 1041 VQDKLISIVEVAISCLDENPESRPT-MPKVSQL 1072 (1075)
Q Consensus 1041 ~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~~ 1072 (1075)
.......+.+++.+||++||++||+ ++++...
T Consensus 290 ~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~ 322 (681)
T 2pzi_A 290 VLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQ 322 (681)
T ss_dssp HHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred ccccCHHHHHHHhhhccCChhhCCCHHHHHHHH
Confidence 1223457899999999999999996 4445443
No 298
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=296.03 Aligned_cols=277 Identities=21% Similarity=0.234 Sum_probs=212.9
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|.|+ |+. +++++... |.. + .++|++|||++|++++..+..++.+++|++|+|++|.+++..|..
T Consensus 30 C~~~~~-c~~---------~~~~l~~i-P~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 30 CDRNGI-CKG---------SSGSLNSI-PSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp ECTTSE-EEC---------CSTTCSSC-CTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCeE-eeC---------CCCCcccc-ccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence 999998 754 34444433 322 2 358999999999999766668999999999999999999888888
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCC-CCCCCCCCCCEEEcCCC-CCCCCCCccccCccc
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIP-PSLGNLSNLDTLHLYDN-SLSDSIPSEFGNLRS 194 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 194 (1075)
|+++++|++|+|++|++++..+..++.+++|++|++++|.++++.+ ..+..+++|++|++++| .++...+..|.++++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 9999999999999999996555558899999999999999998766 67889999999999998 577777788999999
Q ss_pred cceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCc---ccccccccc
Q 042958 195 LSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLG---NLTNLATLY 271 (1075)
Q Consensus 195 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ 271 (1075)
|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+. ....++.++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 99999999999988888999999999999999998654334455688999999999998875544332 234455555
Q ss_pred cccccCcC----CCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccC
Q 042958 272 LYENSLSG----SIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSG 327 (1075)
Q Consensus 272 L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 327 (1075)
++++.+++ .+|..+..+++|+.|++++|+++.+.+..|..+++|++|++++|.+.+
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 55555543 245566667777777777777775444445667777777777776664
No 299
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.1e-30 Score=284.17 Aligned_cols=250 Identities=24% Similarity=0.242 Sum_probs=164.1
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccc--cCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFG--TIP 114 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p 114 (1075)
|.|.+|.|+.. ++.. +|.. -.++|++|+|++|+++...+..++.+++|++|+|++|.++. .+|
T Consensus 7 C~~~~l~c~~~-----------~l~~-ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSK-----------GLTS-VPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSS-----------CCSS-CCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCC-----------Cccc-CCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 89999999753 2222 2221 23678999999999884434457889999999999998873 336
Q ss_pred CCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCC-CCCCCCCCCCEEEcCCCCCCCCCCccccCcc
Q 042958 115 PEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIP-PSLGNLSNLDTLHLYDNSLSDSIPSEFGNLR 193 (1075)
Q Consensus 115 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 193 (1075)
..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 66777888999999888887 466667777888888888877777655 5677777777777777777766666666777
Q ss_pred ccceEeeecccccc-ccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccccccccccc
Q 042958 194 SLSMLSLGYNKFSG-SIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYL 272 (1075)
Q Consensus 194 ~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 272 (1075)
+|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 77777777776664 45566666666666666666665555555555666666666666555444444445555555555
Q ss_pred ccccCcCCCCcccCCCc-cCcEEEccCCCCC
Q 042958 273 YENSLSGSIPSEFGNLR-SLSMLNLGYNKLN 302 (1075)
Q Consensus 273 ~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 302 (1075)
++|.+++..|..+..++ +|++|+|++|.+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555544444444442 4555555555444
No 300
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.96 E-value=6.5e-30 Score=283.40 Aligned_cols=220 Identities=20% Similarity=0.278 Sum_probs=161.1
Q ss_pred cCCCCC-ceecccCceEEEEEEE-CCCCEEEEEEccCCCCCchhHHHHHHHHHHHH-hcCCcCceeeEEEEeec---ccc
Q 042958 815 NDFDDE-HCIGKGGQGSVYKAEL-ASGEIVAVKKFHSPLPGEMTFQQEFLNEVKAL-TEIRHRNIVKFYGFCSH---VRH 888 (1075)
Q Consensus 815 ~~~~~~-~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~---~~~ 888 (1075)
++|.+. +.||+|+||.||+|.. .+++.||||++.. ...+.+|+.++ +..+||||+++++++.. ...
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc--------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 556666 7799999999999965 5799999999853 14567888887 55699999999998865 122
Q ss_pred chhheecCcc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCC---CCCceEeccc
Q 042958 889 SLAMILSNNA-----------AAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDF---DNEAHVSDFG 954 (1075)
Q Consensus 889 ~l~~~~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG 954 (1075)
.+.++++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg 165 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 165 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred eEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence 2222222221 123589999999999999999999999 9999999999999998 7889999999
Q ss_pred cccccCCCCCceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCCCCccCccccchhhhhhhhhhccCCCC
Q 042958 955 IAKFLKPDSSNWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRL 1034 (1075)
Q Consensus 955 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1075)
++.... +..++.++||||+|+++|||++|+.||........... ..........
T Consensus 166 ~a~~~~----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~----~~~~~~~~~~ 219 (299)
T 3m2w_A 166 FAKETT----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG----MKTRIRMGQY 219 (299)
T ss_dssp TCEECT----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC----SCCSSCTTCC
T ss_pred cccccc----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH----HHHHHhhccc
Confidence 987543 23467899999999999999999999964332111000 0011111111
Q ss_pred CCCCcCcHHHHHHHHHHHHHccCCCCCCCCCHHHHHh
Q 042958 1035 PTPSCIVQDKLISIVEVAISCLDENPESRPTMPKVSQ 1071 (1075)
Q Consensus 1035 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1071 (1075)
..+.......+.++.+++.+||+.||++|||++|+++
T Consensus 220 ~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 220 EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp SSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 1111111223457999999999999999999999986
No 301
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.3e-33 Score=338.70 Aligned_cols=448 Identities=17% Similarity=0.158 Sum_probs=208.5
Q ss_pred C-ccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCc---cCCCCcccc------------ccCCCc
Q 042958 37 C-AWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQL---YGNIPPQIG------------NISRLK 100 (1075)
Q Consensus 37 c-~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~ 100 (1075)
| +|+++.+....++ .+.+. ... .++..+..+++|++|+|+++.. .+.+|...+ .+++|+
T Consensus 41 ck~W~~~~~~~~~~l---~~~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSETREHV---TMALC-YTA-TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHHCCEE---EESCG-GGS-CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhccccEE---EEeec-ccc-ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 6 7999965432222 22211 111 2222355677888888877532 234554444 455555
Q ss_pred eeecccCcccccCCCCCCCC--CCCcEEEccCcc-cCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcC
Q 042958 101 YLDLSSNLFFGTIPPEIGHL--SYLKTLQLFENQ-LNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLY 177 (1075)
Q Consensus 101 ~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (1075)
+|+|++|.+++..+..++.. ++|++|+|++|. ++ +..+ +.....+++|++|+|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~---~~~l--------------------~~~~~~~~~L~~L~L~ 172 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT---TDGL--------------------LSIVTHCRKIKTLLME 172 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE---HHHH--------------------HHHHHHCTTCSEEECT
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC---HHHH--------------------HHHHhhCCCCCEEECc
Confidence 55555555554444444332 235555555543 11 0000 1111234455555555
Q ss_pred CCCCCCC----CCccccCccccceEeeeccccc----cccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEecc
Q 042958 178 DNSLSDS----IPSEFGNLRSLSMLSLGYNKFS----GSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLG 249 (1075)
Q Consensus 178 ~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 249 (1075)
+|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred cccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 5544433 2222334455555555555554 1222333445555555555555543 44455555555555555
Q ss_pred CCCCC---CccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcC-CCCCccccccceecccccc
Q 042958 250 YNKLS---GSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIP-HSLGNLTNLATLYIHNNSL 325 (1075)
Q Consensus 250 ~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l 325 (1075)
..... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++++-.
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~ 330 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred ccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC
Confidence 32211 122234444555555555543222 344455555566666666655443222 2234555666666652222
Q ss_pred cCCCCcccccccccccccccC-----------Cccccc-CCCcCCCCCCcceeeccccccCCCCccccCC-Ccccceeee
Q 042958 326 SGSIPSEIGNLRSLSNLGLSG-----------NKLSGS-IPPSLGYLSNLATLYLYSNSLFDSIPSELGN-LRSLSMLSL 392 (1075)
Q Consensus 326 ~~~~~~~~~~l~~L~~L~l~~-----------N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L 392 (1075)
.+..+..+..+++|++|++++ |.+++. ++..+..+++|++|+++.|.+++..+..+.. +++|+.|++
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 222222234455566666652 333321 1111233555666666555554444444433 555666666
Q ss_pred c----ccccccc-----CChhhccCCCCCeEEeecc--ccccccccccc-cccccceeccccccccc-CCCCCCcccccc
Q 042958 393 G----YNKLSGS-----IPHSLGNLTNLATLDLYDN--SLSGSIPSEFG-NLRSLSTLSLGYNKLSG-SIPHSLGNLTNL 459 (1075)
Q Consensus 393 s----~N~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L 459 (1075)
+ .|++++. ++..+.++++|++|++++| .+++..+..+. .+++|++|+|++|++++ .++..+.++++|
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCccc
Confidence 4 4455432 2233445566666666532 24433333332 25556666666666553 223334455566
Q ss_pred ccccccCCccccC-CCccccCcCCCCEEeCCCCcccCCCcccc-cCCCccceeeccC
Q 042958 460 DALYLYDNSLSGS-IPGEIGNLRSISNLALNNNKLSGSIPQSL-GNLSNLVILYLYN 514 (1075)
Q Consensus 460 ~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 514 (1075)
++|+|++|.+++. ++..+..+++|+.|++++|++++...+.+ ..++.+....+..
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 6666666655433 22223445566666666666554332222 2344444444443
No 302
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.96 E-value=1.4e-30 Score=294.05 Aligned_cols=238 Identities=15% Similarity=0.142 Sum_probs=172.9
Q ss_pred hcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCC-----chhHHHHHHHHHHHHhcCC---------cCceeeE
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPG-----EMTFQQEFLNEVKALTEIR---------HRNIVKF 879 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~-----~~~~~~~~~~E~~~l~~l~---------h~niv~l 879 (1075)
.++|++.+.||+|+||.||+|+. +|+.||||++...... .....+.+.+|++++++++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46788899999999999999987 6899999999765321 2223467889999988885 7777777
Q ss_pred EEEee-----------------c------------cccchhheecC--cc------ccCCCCHHHHHHHHHHHHHHHHHH
Q 042958 880 YGFCS-----------------H------------VRHSLAMILSN--NA------AAKDLGWTRRMNVIKGISDALSYM 922 (1075)
Q Consensus 880 ~~~~~-----------------~------------~~~~l~~~~~~--~~------~~~~l~~~~~~~i~~~i~~~L~~L 922 (1075)
.+++. . ....++++++. .+ ....+++.+++.++.||+.||+||
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l 177 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA 177 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 76542 1 02222222221 11 124578999999999999999999
Q ss_pred H-hCCCCCeEEecCCCCCeeeCCCC--------------------CceEeccccccccCCCCCceeccccccCccCcccc
Q 042958 923 H-NDCFPPIVHRDISSKNVLLDFDN--------------------EAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPELA 981 (1075)
Q Consensus 923 H-~~~~~~ivH~Dlk~~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~ 981 (1075)
| +. +|+||||||+|||++.++ .+||+|||+|+..... ...||+.|+|||++
T Consensus 178 H~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aPE~~ 249 (336)
T 2vuw_A 178 EASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDEDLF 249 (336)
T ss_dssp HHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCSGGG
T ss_pred HHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccChhhh
Confidence 9 88 999999999999999887 8999999999876532 34799999999999
Q ss_pred ccCCCCcccchHhHHHH-HHHHHhCCCCCCccCccccchhhhhhhhhhccCCCCCCCCcCcHHHHHHHHHHHHHccCCCC
Q 042958 982 YTMKVTEKCDVYSFGVL-ALEVIKGKHPRDFISSMSSSSLNLNIALDEMLDPRLPTPSCIVQDKLISIVEVAISCLDENP 1060 (1075)
Q Consensus 982 ~~~~~~~~~Dv~s~G~v-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP 1060 (1075)
.+.. +.++||||+|++ .+++++|..||..... ............ ..............+.++.+++.+||++|
T Consensus 250 ~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~dli~~~L~~d- 323 (336)
T 2vuw_A 250 TGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLW---LHYLTDKMLKQM-TFKTKCNTPAMKQIKRKIQEFHRTMLNFS- 323 (336)
T ss_dssp CCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHH---HHHHHHHHHHTC-CCSSCCCSHHHHHHHHHHHHHHHHGGGSS-
T ss_pred cCCC-ccceehhhhhCCCCcccccccCCCcchhh---hhHHHHhhhhhh-ccCcccchhhhhhcCHHHHHHHHHHhccC-
Confidence 8776 889999998777 7778889999742100 000011111111 11111122234567788999999999976
Q ss_pred CCCCCHHHHH
Q 042958 1061 ESRPTMPKVS 1070 (1075)
Q Consensus 1061 ~~RPs~~evl 1070 (1075)
|++|++
T Consensus 324 ----sa~e~l 329 (336)
T 2vuw_A 324 ----SATDLL 329 (336)
T ss_dssp ----SHHHHH
T ss_pred ----CHHHHH
Confidence 999998
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=287.17 Aligned_cols=275 Identities=20% Similarity=0.175 Sum_probs=160.6
Q ss_pred CCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceeccc
Q 042958 243 LSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHN 322 (1075)
Q Consensus 243 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 322 (1075)
....++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|+.|++++|+++++.+.+|.++++|++|++++
T Consensus 33 ~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 334455555555 3344333 2455555555555544444555556666666666666555555566666666666666
Q ss_pred ccccCCCCcccccccccccccccCCcccccCC-CcCCCCCCcceeecccc-ccCCCCccccCCCcccceeeecccccccc
Q 042958 323 NSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIP-PSLGYLSNLATLYLYSN-SLFDSIPSELGNLRSLSMLSLGYNKLSGS 400 (1075)
Q Consensus 323 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 400 (1075)
|.+++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++|++++.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 66654444445566666666666666653322 35566666666666666 34444455666666666666666666666
Q ss_pred CChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCc---cccccccccccCCcccc----CC
Q 042958 401 IPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLG---NLTNLDALYLYDNSLSG----SI 473 (1075)
Q Consensus 401 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~----~~ 473 (1075)
.|..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+..+. ....++.++|++|.+++ .+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 666666666666666666666544433444566666677776666654433332 23445555555555543 35
Q ss_pred CccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCC
Q 042958 474 PGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDS 520 (1075)
Q Consensus 474 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 520 (1075)
|..+..+++|+.|++++|+++...+..|+++++|+.|+|++|++.+.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 66677777777777777777743333357777777777777777543
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-29 Score=278.76 Aligned_cols=231 Identities=25% Similarity=0.253 Sum_probs=144.8
Q ss_pred ccCcEEEccCCCCCCCcCCCCCccccccceecccccccCC--CCcccccccccccccccCCcccccCCCcCCCCCCccee
Q 042958 289 RSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGS--IPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATL 366 (1075)
Q Consensus 289 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L 366 (1075)
++|++|++++|.++.+.+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3455555555555544444455555555555555555422 1344445555666666666555 244445556666666
Q ss_pred eccccccCCCCc-cccCCCcccceeeeccccccccCChhhccCCCCCeEEeecccccc-ccccccccccccceecccccc
Q 042958 367 YLYSNSLFDSIP-SELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSG-SIPSEFGNLRSLSTLSLGYNK 444 (1075)
Q Consensus 367 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 444 (1075)
++++|.+.+..+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ ..|..|..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666666644433 456666666666666666666666666666777777777776665 456667777777777777777
Q ss_pred cccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCC-CccceeeccCCCCCCC
Q 042958 445 LSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNL-SNLVILYLYNNSLFDS 520 (1075)
Q Consensus 445 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 520 (1075)
+++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..+ ++|+.|+|++|++++.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 776666677777777777777777776656567777777777777777777667777766 3777777777777543
No 305
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.3e-28 Score=285.21 Aligned_cols=228 Identities=27% Similarity=0.312 Sum_probs=139.0
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
+++++|||++|++++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 136 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT------------------ 136 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC------------------
Confidence 34555555555555444555555555555555555555444455555555555555555554
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeec-cccccccCCCCcCCCCcCceeccccCCCC
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGY-NKFSGSIPHSLGNLTNLATLYLHNNSLFD 231 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (1075)
.+.+..|..+++|++|+|++|+++...+..|.++++|++|++++ |.+....+..|.++++|++|+|++|++++
T Consensus 137 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 137 ------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp ------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred ------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 44444455555555555555555555555555556666666655 33333333456666666666666666654
Q ss_pred CCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCc
Q 042958 232 SIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGN 311 (1075)
Q Consensus 232 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 311 (1075)
. | .+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|+++++.+..|..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 3 2 3566667777777777777666666777777777777777777666677777777777777777777666667777
Q ss_pred cccccceeccccccc
Q 042958 312 LTNLATLYIHNNSLS 326 (1075)
Q Consensus 312 l~~L~~L~L~~N~l~ 326 (1075)
+++|+.|+|++|.+.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 777777777777765
No 306
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-28 Score=268.12 Aligned_cols=255 Identities=25% Similarity=0.273 Sum_probs=143.3
Q ss_pred eEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccC
Q 042958 51 NSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFE 130 (1075)
Q Consensus 51 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 130 (1075)
+.+++++.++..... .-.++|++|+|++|.+++..+..++.+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 445666666654321 1235666666666666655555566666666666666666655566666666666666666
Q ss_pred cc-cCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecccccccc
Q 042958 131 NQ-LNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSI 209 (1075)
Q Consensus 131 n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 209 (1075)
|. ++...|. .|..+++|++|++++|.+++..+..|.++++|++|++++|++++..
T Consensus 90 n~~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 90 NAQLRSVDPA------------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp CTTCCCCCTT------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccccCHH------------------------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 65 4433344 4555555555555555555555555555555555555555555444
Q ss_pred CCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCc
Q 042958 210 PHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLR 289 (1075)
Q Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 289 (1075)
+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 44455555555555555555544444455566666666666666655566666666666666666666654445566666
Q ss_pred cCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccc
Q 042958 290 SLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIG 334 (1075)
Q Consensus 290 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 334 (1075)
+|+.|++++|.+....+. ..-...++.+..+.+.+....|..+.
T Consensus 226 ~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp TCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 666666666666532211 11123344555555555555555543
No 307
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.2e-31 Score=321.56 Aligned_cols=422 Identities=16% Similarity=0.103 Sum_probs=200.9
Q ss_pred CCCCcccccccccccccccCc---CCCCcccC------------CCccCcEEEccCCCCCCCcCCCCCcc-c-cccceec
Q 042958 258 PHSLGNLTNLATLYLYENSLS---GSIPSEFG------------NLRSLSMLNLGYNKLNGIIPHSLGNL-T-NLATLYI 320 (1075)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~Ls~N~l~~~~~~~~~~l-~-~L~~L~L 320 (1075)
+..+..+++|++|+++++... +.+|..++ .+++|++|+|++|.+++..+..+... + +|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 334456667777777664321 22332222 45666666666666654444444442 2 3666666
Q ss_pred cccc-ccC-CCCcccccccccccccccCCccccc----CCCcCCCCCCcceeeccccccCC----CCccccCCCccccee
Q 042958 321 HNNS-LSG-SIPSEIGNLRSLSNLGLSGNKLSGS----IPPSLGYLSNLATLYLYSNSLFD----SIPSELGNLRSLSML 390 (1075)
Q Consensus 321 ~~N~-l~~-~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L 390 (1075)
++|. ++. ..+.....+++|++|+|++|.+++. ++..+..+++|++|++++|.+.+ .++..+.++++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6654 110 0111223455666666666665443 11223345556666666555542 122333445555555
Q ss_pred eeccccccccCChhhccCCCCCeEEeeccccc---cccccccccccccceecccccccccCCCCCCccccccccccccCC
Q 042958 391 SLGYNKLSGSIPHSLGNLTNLATLDLYDNSLS---GSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDN 467 (1075)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 467 (1075)
++++|.+.+ ++..+..+++|++|+++++... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCC
Confidence 555555543 4455555555555555542221 112234444555555555554222 34444555555555555555
Q ss_pred ccccCCC-ccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccC-----------CCCCCCCCc-cccCccccccc
Q 042958 468 SLSGSIP-GEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYN-----------NSLFDSIPS-ELGNLRSLSML 534 (1075)
Q Consensus 468 ~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~~-~l~~l~~L~~L 534 (1075)
.+++... ..+..+++|+.|+++++-..+.++..+..+++|+.|++++ |.+++.... ....+++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 379 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE---- 379 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT----
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc----
Confidence 5443222 2234455555555552211111222233445555555552 233221111 1122333
Q ss_pred cccccccccccCCcccccccCCCccccccchhhhh-hhHhHHHhhc----ccccccc-----cccccCcccccceeecCC
Q 042958 535 SFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGK-LNFLIKLILA----QNQLSGQ-----LSPKLGSLAQLEHLDLSS 604 (1075)
Q Consensus 535 ~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~-~~~l~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~ 604 (1075)
|++|++++|.+++..+..++. +++|+.|+++ .|++++. ++..+..+++|+.|+|++
T Consensus 380 --------------L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 380 --------------LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp --------------CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred --------------CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 344444444444444444433 4445555553 4444432 222344566666666653
Q ss_pred C--cccCcccccccc-cccceEEEcccccccc-ccchhcccccccceeeeccccccCc-hhhhhccccccceeecCCCcc
Q 042958 605 N--RLSNSIPKSFGN-LVKLHYLNLSNNQFSR-GIPIKLEELIHLSELDLSHNFLREA-IPSQICIMQSLENLNLSHNSL 679 (1075)
Q Consensus 605 N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~~~~~~~~~~L~~L~ls~N~l 679 (1075)
+ .+++..+..+.. +++|++|+|++|++++ .++..+..+++|++|+|++|.+++. ++.....+++|+.|++++|++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 2 355444444433 5666666666666654 3344445566666666666666543 233334566666666666666
Q ss_pred ccCChhhh-cccccccEEeec
Q 042958 680 VGLIPSCF-EKMHGLLRIDIS 699 (1075)
Q Consensus 680 ~~~~p~~~-~~~~~l~~l~~s 699 (1075)
+......+ ..+|.+....+.
T Consensus 526 t~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 526 SMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp CTTCTTGGGGCCTTEEEEEEC
T ss_pred CHHHHHHHHHhCCCcEEEEec
Confidence 54433333 234544444443
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1e-27 Score=281.97 Aligned_cols=248 Identities=24% Similarity=0.257 Sum_probs=207.7
Q ss_pred CceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCC
Q 042958 99 LKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYD 178 (1075)
Q Consensus 99 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 178 (1075)
...++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|.+.++.+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 344555555554 4444433 4556666666666655555566666666666666666666677799999999999999
Q ss_pred CCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecccc-CCCCCCcccccCCCCCCeEeccCCCCCCcc
Q 042958 179 NSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNN-SLFDSIPSELGNLRSLSMLSLGYNKLSGSI 257 (1075)
Q Consensus 179 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (1075)
|+++...+..|..+++|++|+|++|+++...+..|.++++|++|++++| .+....+..|..+++|++|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9999888888999999999999999999877889999999999999995 55544455799999999999999999954
Q ss_pred CCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccccc
Q 042958 258 PHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLR 337 (1075)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 337 (1075)
| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|++|+|++|++++..+..|..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 588999999999999999998899999999999999999999999999999999999999999999988888899999
Q ss_pred ccccccccCCcccc
Q 042958 338 SLSNLGLSGNKLSG 351 (1075)
Q Consensus 338 ~L~~L~l~~N~l~~ 351 (1075)
+|+.|++++|.+..
T Consensus 291 ~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 291 YLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEccCCCcCC
Confidence 99999999999863
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-29 Score=283.31 Aligned_cols=247 Identities=23% Similarity=0.233 Sum_probs=138.5
Q ss_pred CCCCCccEEEccCCCccCCCCccccccCCCceeecccCcc-cccCCCCCC-------CCCCCcEEEccCcccCCCCCccc
Q 042958 70 SSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLF-FGTIPPEIG-------HLSYLKTLQLFENQLNGSIPYEI 141 (1075)
Q Consensus 70 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~ 141 (1075)
+..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677777777777 677666655 77777777777 345565554 67777777777777777676654
Q ss_pred --cccCCcceeecccccccCCCCCCCCCC-----CCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccc--cCCC
Q 042958 142 --GRLSSLNYLALYSNYLEDLIPPSLGNL-----SNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGS--IPHS 212 (1075)
Q Consensus 142 --~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~ 212 (1075)
..+++|++|++++|.+++. |..++.+ ++|++|+|++|++++..+..|+.+++|++|+|++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5666666666666666655 4444444 5666666666666655555566666666666666655433 1222
Q ss_pred C--cCCCCcCceeccccCCCCC--Cc-ccccCCCCCCeEeccCCCCCCccC-CCCcccccccccccccccCcCCCCcccC
Q 042958 213 L--GNLTNLATLYLHNNSLFDS--IP-SELGNLRSLSMLSLGYNKLSGSIP-HSLGNLTNLATLYLYENSLSGSIPSEFG 286 (1075)
Q Consensus 213 l--~~l~~L~~L~L~~N~l~~~--~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 286 (1075)
+ .++++|++|+|++|++++. ++ ..+..+++|++|+|++|++++..| ..+..+++|++|+|++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2 4555555555555555421 11 223345555555555555554442 23334455555555555555 3343333
Q ss_pred CCccCcEEEccCCCCCCCcCCCCCccccccceeccccccc
Q 042958 287 NLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLS 326 (1075)
Q Consensus 287 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 326 (1075)
++|++|+|++|+|++. |. +..+++|++|++++|+++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4455555555555443 22 444455555555555444
No 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.4e-28 Score=264.83 Aligned_cols=236 Identities=25% Similarity=0.290 Sum_probs=110.3
Q ss_pred CcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccccccccccccccc-CcCCCCcccCCCccCcEEEc
Q 042958 218 NLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENS-LSGSIPSEFGNLRSLSMLNL 296 (1075)
Q Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 296 (1075)
+|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 33333333333333333333334444444444444443333344444444444444443 33333344444444444444
Q ss_pred cCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCC
Q 042958 297 GYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDS 376 (1075)
Q Consensus 297 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 376 (1075)
++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 44444444444444444444444444444444444444445555555555555444444455555555555555555444
Q ss_pred CccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCc
Q 042958 377 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLG 454 (1075)
Q Consensus 377 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 454 (1075)
.|..|..+++|++|++++|++++..+..+..+++|++|++++|.+....+. ..-...++.+..+.+.+....|..+.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 455555555555555555555554445555566666666666655532111 11123344445555555555555443
No 311
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=278.70 Aligned_cols=227 Identities=28% Similarity=0.324 Sum_probs=128.1
Q ss_pred CCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcC
Q 042958 98 RLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLY 177 (1075)
Q Consensus 98 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (1075)
++++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++.+.+..|..+++|++|+|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 34444444444443334444444444444444444443333444444444444444444444444445555556666666
Q ss_pred CCCCCCCCCccccCccccceEeeecc-ccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCc
Q 042958 178 DNSLSDSIPSEFGNLRSLSMLSLGYN-KFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGS 256 (1075)
Q Consensus 178 ~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 256 (1075)
+|.++...+..|..+++|++|+|++| .+....+..|.++++|++|+|++|+++. +| .+..+++|++|+|++|++++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 66555555555556666666666653 3333333456666666666666666653 33 356666666666666666665
Q ss_pred cCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceeccccccc
Q 042958 257 IPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLS 326 (1075)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 326 (1075)
.|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5666666666666666666666666666666666666666666666666666666666666666666654
No 312
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=278.92 Aligned_cols=247 Identities=24% Similarity=0.242 Sum_probs=223.5
Q ss_pred eeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEcc
Q 042958 50 VNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLF 129 (1075)
Q Consensus 50 v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 129 (1075)
...+++.+.++...+... .+++++|+|++|++++..+..|+++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345667777776543322 3789999999999998888999999999999999999998888899999999999999
Q ss_pred CcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCC-CCCCCCCccccCccccceEeeeccccccc
Q 042958 130 ENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDN-SLSDSIPSEFGNLRSLSMLSLGYNKFSGS 208 (1075)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 208 (1075)
+|+++...+..|..+++|++|+|++|.+..+.+..|.++++|++|+|++| .+....+..|.++++|++|+|++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99999776778999999999999999999999999999999999999995 555556668999999999999999998 5
Q ss_pred cCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCC
Q 042958 209 IPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNL 288 (1075)
Q Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 288 (1075)
+| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 48899999999999999999889999999999999999999999889999999999999999999998888899999
Q ss_pred ccCcEEEccCCCCC
Q 042958 289 RSLSMLNLGYNKLN 302 (1075)
Q Consensus 289 ~~L~~L~Ls~N~l~ 302 (1075)
++|+.|+|++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999986
No 313
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-27 Score=268.25 Aligned_cols=235 Identities=22% Similarity=0.257 Sum_probs=193.2
Q ss_pred cCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEE
Q 042958 96 ISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLH 175 (1075)
Q Consensus 96 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (1075)
.+++++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478888999999887 78888888888888888888888 77777666666666666666665 3344555555555555
Q ss_pred cCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC
Q 042958 176 LYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 176 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
+++|++.+.+|..+... ..+..|.++++|++|+|++|+++ .+|..+..+++|++|+|++|++++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 55555544444433320 11233556999999999999998 788899999999999999999995
Q ss_pred ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccc
Q 042958 256 SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGN 335 (1075)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 335 (1075)
+|..+..+++|++|++++|.+.+.+|..|..+++|+.|++++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+++
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 6668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCccc
Q 042958 336 LRSLSNLGLSGNKLS 350 (1075)
Q Consensus 336 l~~L~~L~l~~N~l~ 350 (1075)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999999988765
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.4e-28 Score=274.12 Aligned_cols=249 Identities=24% Similarity=0.274 Sum_probs=175.8
Q ss_pred cccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccC-CCCCcccc-------ccCCcceeecccccccCCCCC
Q 042958 92 QIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLN-GSIPYEIG-------RLSSLNYLALYSNYLEDLIPP 163 (1075)
Q Consensus 92 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~ 163 (1075)
.++..++|++|++++|.+ .+|..+... |++|+|++|+++ +.+|..+. .+++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 456788999999999999 778777655 999999999994 56676665 688899999999999887777
Q ss_pred CC--CCCCCCCEEEcCCCCCCCCCCccccCc-----cccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC--Cc
Q 042958 164 SL--GNLSNLDTLHLYDNSLSDSIPSEFGNL-----RSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS--IP 234 (1075)
Q Consensus 164 ~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~ 234 (1075)
.+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 66 8888888888888888877 7777777 7888888888888877778888888888888888887654 23
Q ss_pred ccc--cCCCCCCeEeccCCCCCCc--cC-CCCcccccccccccccccCcCCCC-cccCCCccCcEEEccCCCCCCCcCCC
Q 042958 235 SEL--GNLRSLSMLSLGYNKLSGS--IP-HSLGNLTNLATLYLYENSLSGSIP-SEFGNLRSLSMLNLGYNKLNGIIPHS 308 (1075)
Q Consensus 235 ~~~--~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 308 (1075)
..+ ..+++|++|+|++|++++. ++ ..+..+++|++|++++|.+++..| ..+..+++|++|+|++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 6777888888888877731 11 223455666666666666665543 34445566666666666666 34444
Q ss_pred CCccccccceecccccccCCCCcccccccccccccccCCccc
Q 042958 309 LGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLS 350 (1075)
Q Consensus 309 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 350 (1075)
+. ++|++|+|++|+|++. |. +..+++|++|++++|.++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 43 5566666666666543 33 555555555555555554
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-28 Score=274.39 Aligned_cols=263 Identities=22% Similarity=0.206 Sum_probs=167.2
Q ss_pred ccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccC
Q 042958 267 LATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSG 346 (1075)
Q Consensus 267 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 346 (1075)
++.++++.+.+...+...+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344444444443333344445556666666666665555556666666666666666654333 55666666666666
Q ss_pred CcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccc
Q 042958 347 NKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIP 426 (1075)
Q Consensus 347 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 426 (1075)
|++++.. ..++|++|++++|.+.+..+.. +++|++|++++|++++..+..+..+++|++|+|++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6665322 2256666666666665443332 4557777777777776666667777777777777777776666
Q ss_pred ccc-ccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCC
Q 042958 427 SEF-GNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLS 505 (1075)
Q Consensus 427 ~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 505 (1075)
..+ ..+++|++|+|++|++++. |. ...+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 555 3567777777777777644 22 2346777777777777774 4445777777888888888777 4566777778
Q ss_pred ccceeeccCCCCC-CCCCccccCcccccccccccc-cccc
Q 042958 506 NLVILYLYNNSLF-DSIPSELGNLRSLSMLSFAYN-KLSG 543 (1075)
Q Consensus 506 ~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~l~~N-~l~~ 543 (1075)
+|+.|++++|++. +.+|..+..+++|+.+++.++ .++|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 8888888888877 566777777788888777743 3443
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-28 Score=274.15 Aligned_cols=256 Identities=23% Similarity=0.231 Sum_probs=136.2
Q ss_pred ceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecccc
Q 042958 148 NYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNN 227 (1075)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 227 (1075)
+.++++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344444555444444444444455555555555555444455555555555555555543322 444444444444444
Q ss_pred CCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCC
Q 042958 228 SLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPH 307 (1075)
Q Consensus 228 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 307 (1075)
++ ++.. ..++|++|++++|.+++..+.. +++|+.|++++|++++..+.
T Consensus 91 ~l------------------------~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 91 YV------------------------QELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp EE------------------------EEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB
T ss_pred cc------------------------cccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccch
Confidence 44 3211 1134444444444444332222 34566666666666655555
Q ss_pred CCCccccccceecccccccCCCCcccc-cccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcc
Q 042958 308 SLGNLTNLATLYIHNNSLSGSIPSEIG-NLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRS 386 (1075)
Q Consensus 308 ~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 386 (1075)
.|..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. + ....+++|++|+|++|.+.+ +|..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCc
Confidence 666666666666666666655555443 456666666666666543 1 22235566666666666643 3333556666
Q ss_pred cceeeeccccccccCChhhccCCCCCeEEeeccccc-cccccccccccccceeccc
Q 042958 387 LSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLS-GSIPSEFGNLRSLSTLSLG 441 (1075)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~ 441 (1075)
|++|++++|+++ .+|..+..+++|+.|++++|.++ +..+..+..+++|+.|+++
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 666666666665 34555666666666666666665 4555556666666666666
No 317
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.7e-26 Score=248.03 Aligned_cols=215 Identities=27% Similarity=0.262 Sum_probs=149.9
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|.|+.|.+.+.++.++++++++... |.. + .+++++|+|++|++++..+..++.+++|++|+|++|.++...+..
T Consensus 5 C~~~~~~C~c~~~~~~l~~~~~~l~~i-p~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 5 CKKDGGVCSCNNNKNSVDCSSKKLTAI-PSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp BGGGTCSBEEETTTTEEECTTSCCSSC-CSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCCCCCCEeCCCCCEEEccCCCCCcc-CCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 999999998777777788888888753 322 1 256788888888887666667778888888888888877544555
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccc
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLS 196 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 196 (1075)
|.++++|++|+|++|++++..+..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+++..+..|..+++|+
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 67778888888888877765555666677777777777777776666666777777777777777666555666666666
Q ss_pred eEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC
Q 042958 197 MLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 197 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
+|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 66666666665555556666666666666666665555556666666666666666553
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1e-25 Score=271.19 Aligned_cols=268 Identities=28% Similarity=0.344 Sum_probs=146.8
Q ss_pred CccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecc
Q 042958 74 HLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALY 153 (1075)
Q Consensus 74 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 153 (1075)
.++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4788999999988 7787776 78888888888887 5665 56778888888887773 443 34455555555
Q ss_pred cccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCC
Q 042958 154 SNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSI 233 (1075)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (1075)
+|.++++.+ .+++|+.|++++|+++. +|.. +++|++|+|++|++++ +
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-------------------------lp~~---l~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-------------------------LPVL---PPGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSC-------------------------CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCc-------------------------CCCC---CCCCCEEECcCCcCCC-c
Confidence 555444322 23344444444444432 2221 1334444444444432 1
Q ss_pred cccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccc
Q 042958 234 PSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLT 313 (1075)
Q Consensus 234 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 313 (1075)
|. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~---------- 215 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS---------- 215 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS----------
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc----------
Confidence 21 12334444444444442 22 122333444444444432 1211 1334444444444442
Q ss_pred cccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeec
Q 042958 314 NLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLG 393 (1075)
Q Consensus 314 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 393 (1075)
+|.. +++|+.|++++|++++ +| ..+++|++|++++|.+. .+|. .+++|+.|+|+
T Consensus 216 ---------------l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 216 ---------------LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp ---------------CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ---------------cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 2211 2345555555555543 33 23355666666666664 3333 45677778888
Q ss_pred cccccccCChhhccCCCCCeEEeecccccccccccccccc
Q 042958 394 YNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLR 433 (1075)
Q Consensus 394 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 433 (1075)
+|+|+ .+|..+.++++|+.|+|++|.+++..|..+..++
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 88877 5677788888888888888888877776666554
No 319
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.3e-25 Score=270.29 Aligned_cols=269 Identities=28% Similarity=0.353 Sum_probs=184.9
Q ss_pred CCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEc
Q 042958 97 SRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHL 176 (1075)
Q Consensus 97 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (1075)
.++++|++++|.++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---------------------------~l~~L~~L~L 88 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---------------------------LPPELRTLEV 88 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---------------------------CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---------------------------cCCCCCEEEc
Confidence 35788888888887 7777665 67777777777776 2332 2345666666
Q ss_pred CCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCc
Q 042958 177 YDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGS 256 (1075)
Q Consensus 177 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 256 (1075)
++|++++ +|. .+++|++|+|++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|+++
T Consensus 89 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-- 154 (622)
T 3g06_A 89 SGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-- 154 (622)
T ss_dssp CSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--
T ss_pred CCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC--
Confidence 6666653 222 45666666666666663 332 34556666666666653 3322 245555555555554
Q ss_pred cCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccc
Q 042958 257 IPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNL 336 (1075)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 336 (1075)
+ +|. .+++|+.|++++|.++++ | ..+++|+.|++++|.+++ +|.. +
T Consensus 155 ----------------------~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~ 200 (622)
T 3g06_A 155 ----------------------S-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPTL---P 200 (622)
T ss_dssp ----------------------C-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred ----------------------C-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence 2 222 124566666666666643 3 334667777777777764 3332 3
Q ss_pred cccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEe
Q 042958 337 RSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDL 416 (1075)
Q Consensus 337 ~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 416 (1075)
++|+.|++++|.++ .+|.. +++|++|++++|.+.+ +| ..+++|++|+|++|+|+ .+|. .+++|+.|+|
T Consensus 201 ~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred chhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 68899999999998 45543 4789999999999965 55 45688999999999998 4555 6789999999
Q ss_pred eccccccccccccccccccceecccccccccCCCCCCcccc
Q 042958 417 YDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLT 457 (1075)
Q Consensus 417 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 457 (1075)
++|+|+ .+|..|.++++|+.|+|++|.+++..|..+..++
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999 5688899999999999999999988887776655
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3e-27 Score=279.30 Aligned_cols=235 Identities=25% Similarity=0.258 Sum_probs=155.4
Q ss_pred CCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeC
Q 042958 409 TNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLAL 488 (1075)
Q Consensus 409 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 488 (1075)
++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 367777777777777666777777777777777777765554 6677777777777777764322 256666666
Q ss_pred CCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhh
Q 042958 489 NNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELG 568 (1075)
Q Consensus 489 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~ 568 (1075)
++|.+++..+. .+++|+.|+|++|.+++..|..++.+++|+.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----------------------------------- 148 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY----------------------------------- 148 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE-----------------------------------
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE-----------------------------------
Confidence 66666654443 2355666666666665555544444444433
Q ss_pred hhhHhHHHhhcccccccccccccC-cccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccce
Q 042958 569 KLNFLIKLILAQNQLSGQLSPKLG-SLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSE 647 (1075)
Q Consensus 569 ~~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 647 (1075)
|+|++|.+++..|..+. .+++|+.|+|++|.|++. |. +..+++|++|+|++|+|++..| .+..+++|+.
T Consensus 149 -------L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~ 218 (487)
T 3oja_A 149 -------LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218 (487)
T ss_dssp -------EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred -------EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccE
Confidence 33333444444444443 567788888888888754 32 3347778888888888876433 4777888888
Q ss_pred eeeccccccCchhhhhccccccceeecCCCccc-cCChhhhcccccccEEeec
Q 042958 648 LDLSHNFLREAIPSQICIMQSLENLNLSHNSLV-GLIPSCFEKMHGLLRIDIS 699 (1075)
Q Consensus 648 L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~l~~s 699 (1075)
|+|++|.|++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888888875 6666777788888888888887 6777777777777777765
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8e-27 Score=275.70 Aligned_cols=237 Identities=22% Similarity=0.198 Sum_probs=173.0
Q ss_pred CCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCccee
Q 042958 287 NLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATL 366 (1075)
Q Consensus 287 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L 366 (1075)
.+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34466777777777766666666777777777777777665444 6667777777777777764322 2677777
Q ss_pred eccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccc-cccccceeccccccc
Q 042958 367 YLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFG-NLRSLSTLSLGYNKL 445 (1075)
Q Consensus 367 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l 445 (1075)
++++|.+.+..+. .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..|. .+++|++|+|++|.|
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777777655443 346677888888888777777788888888888888888877777765 678888888888888
Q ss_pred ccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCC-CCCCcc
Q 042958 446 SGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLF-DSIPSE 524 (1075)
Q Consensus 446 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 524 (1075)
++..+ +..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 75532 33578888888888888864 4458888888888888888874 6777888888888888888887 566777
Q ss_pred ccCcccccccccc
Q 042958 525 LGNLRSLSMLSFA 537 (1075)
Q Consensus 525 l~~l~~L~~L~l~ 537 (1075)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 7788888777775
No 322
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.1e-29 Score=310.53 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=95.9
Q ss_pred ccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccC---CCCcc------------ccccCCCcee
Q 042958 38 AWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYG---NIPPQ------------IGNISRLKYL 102 (1075)
Q Consensus 38 ~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~---~~p~~------------l~~l~~L~~L 102 (1075)
+|+++... ....+++.... +..+...+..+++|++|+|+++.... ..|.. ...+++|++|
T Consensus 36 ~W~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L 110 (594)
T 2p1m_B 36 SWYEIERW---CRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110 (594)
T ss_dssp HHHHHHHH---HCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred HHHHhhhh---hceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeE
Confidence 79988321 23344444322 22223345667889999998875321 22221 2356677777
Q ss_pred ecccCcccccCCCCCC-CCCCCcEEEccCc-ccCCC-CCccccccCCcceeecccccccCCCCCCCC----CCCCCCEEE
Q 042958 103 DLSSNLFFGTIPPEIG-HLSYLKTLQLFEN-QLNGS-IPYEIGRLSSLNYLALYSNYLEDLIPPSLG----NLSNLDTLH 175 (1075)
Q Consensus 103 ~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~ 175 (1075)
+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|++|+
T Consensus 111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~ 190 (594)
T 2p1m_B 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190 (594)
T ss_dssp EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEE
T ss_pred EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEE
Confidence 7777777665555554 5677777777776 44422 233334566666777666666554433322 445666666
Q ss_pred cCCCC--CCCC-CCccccCccccceEeeecc-ccccccCCCCcCCCCcCceecc
Q 042958 176 LYDNS--LSDS-IPSEFGNLRSLSMLSLGYN-KFSGSIPHSLGNLTNLATLYLH 225 (1075)
Q Consensus 176 L~~n~--l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~ 225 (1075)
+++|. ++.. ++..+..+++|++|++++| .+. .++..+..+++|++|+++
T Consensus 191 l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECS
T ss_pred ecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccc
Confidence 66664 1100 1111123455555555555 222 244444455555555543
No 323
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.4e-28 Score=298.84 Aligned_cols=432 Identities=13% Similarity=0.098 Sum_probs=214.2
Q ss_pred ccccCCCCCCeEeccCCCCCC---ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCC-
Q 042958 235 SELGNLRSLSMLSLGYNKLSG---SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLG- 310 (1075)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 310 (1075)
..+..+++|+.|+++++.... ..|..++. .....++..+..+++|++|+|++|.+++..+..+.
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~ 127 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGG------------YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK 127 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC------------BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccc------------hhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH
Confidence 345667888888888875321 11211100 00000011122345566666666655544444443
Q ss_pred ccccccceecccc-cccCC-CCcccccccccccccccCCcccccCCCcC----CCCCCcceeeccccc--cCCC-Ccccc
Q 042958 311 NLTNLATLYIHNN-SLSGS-IPSEIGNLRSLSNLGLSGNKLSGSIPPSL----GYLSNLATLYLYSNS--LFDS-IPSEL 381 (1075)
Q Consensus 311 ~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~l----~~l~~L~~L~L~~N~--l~~~-~p~~~ 381 (1075)
.+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +... ++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4556666666665 33321 22233355666666666666554333222 244566666666664 1100 11112
Q ss_pred CCCcccceeeeccc-cccccCChhhccCCCCCeEEee-------cccccccccccccccccccee-cccccccccCCCCC
Q 042958 382 GNLRSLSMLSLGYN-KLSGSIPHSLGNLTNLATLDLY-------DNSLSGSIPSEFGNLRSLSTL-SLGYNKLSGSIPHS 452 (1075)
Q Consensus 382 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~-------~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~p~~ 452 (1075)
..+++|++|++++| .+. .++..+..+++|+.|+++ .|.+.+ ++..+.++++|+.| .+.+... +.++..
T Consensus 208 ~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~ 284 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAV 284 (594)
T ss_dssp HHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGG
T ss_pred HhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHH
Confidence 33466666666666 333 255556666666666633 333333 22345556666665 3332222 123333
Q ss_pred CccccccccccccCCccccCCC-ccccCcCCCCEEeCCCCcccCC-CcccccCCCccceeeccC---------CCCCCCC
Q 042958 453 LGNLTNLDALYLYDNSLSGSIP-GEIGNLRSISNLALNNNKLSGS-IPQSLGNLSNLVILYLYN---------NSLFDSI 521 (1075)
Q Consensus 453 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~---------N~l~~~~ 521 (1075)
+..+++|++|+|++|.+++... ..+..+++|+.|++++| ++.. ++.....+++|+.|++++ +.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3445566666666665543221 12345566666666655 3211 111222355666666532 2222111
Q ss_pred Ccccc-CccccccccccccccccccCCcccccccCCCccccccchhhh-hhhHhHHHhhc--c----ccccc-----ccc
Q 042958 522 PSELG-NLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELG-KLNFLIKLILA--Q----NQLSG-----QLS 588 (1075)
Q Consensus 522 ~~~l~-~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~-~~~~l~~L~l~--~----n~l~~-----~~~ 588 (1075)
...+. .+++| +.|++++|.+++..+..+. .+++|+.|+++ + |.+++ .++
T Consensus 364 l~~l~~~~~~L------------------~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~ 425 (594)
T 2p1m_B 364 LVSVSMGCPKL------------------ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425 (594)
T ss_dssp HHHHHHHCTTC------------------CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH
T ss_pred HHHHHHhchhH------------------HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH
Confidence 11111 13333 3333333333333333332 24444444444 2 33331 111
Q ss_pred cccCcccccceeecCCCcccCcccccccc-cccceEEEccccccccccchhc-ccccccceeeeccccccCchhh-hhcc
Q 042958 589 PKLGSLAQLEHLDLSSNRLSNSIPKSFGN-LVKLHYLNLSNNQFSRGIPIKL-EELIHLSELDLSHNFLREAIPS-QICI 665 (1075)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~~~-~~~~ 665 (1075)
..+..+++|+.|+|++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....
T Consensus 426 ~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 426 AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 2245567788888876 666555555554 6778888888888766555444 5677888888888887654443 3344
Q ss_pred ccccceeecCCCccccCChhhh-cccccccEEeecCC
Q 042958 666 MQSLENLNLSHNSLVGLIPSCF-EKMHGLLRIDISYN 701 (1075)
Q Consensus 666 ~~~L~~L~ls~N~l~~~~p~~~-~~~~~l~~l~~s~N 701 (1075)
+++|+.|++++|+++......+ ..+|.|+...+..+
T Consensus 505 l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 505 LETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 7788888888887754433444 45566655555544
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.7e-24 Score=236.74 Aligned_cols=204 Identities=26% Similarity=0.245 Sum_probs=103.3
Q ss_pred CccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecc
Q 042958 74 HLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALY 153 (1075)
Q Consensus 74 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 153 (1075)
+|++|||++|++++..+..++++++|++|+|++|.+++..+..+.++++|++|+|++|++++.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 91 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL----------------- 91 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----------------
Confidence 455555555555544444555555555555555555544444455555555555555555433
Q ss_pred cccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccc-cCCCCcCCCCcCceeccccCCCCC
Q 042958 154 SNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGS-IPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
.+..|.++++|++|++++|.+++..+..|+.+++|++|++++|++++. +|..+.++++|++|++++|++++.
T Consensus 92 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 92 -------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp -------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred -------ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 333444455555555555555544444455555555555555555432 344445555555555555555444
Q ss_pred CcccccCCCCCC----eEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCC
Q 042958 233 IPSELGNLRSLS----MLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLN 302 (1075)
Q Consensus 233 ~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 302 (1075)
.+..+..+++|+ .|++++|.+++..+..+.. .+|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 444444444444 5566666665433333322 35555555555555444444555555555555555554
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=237.27 Aligned_cols=204 Identities=25% Similarity=0.292 Sum_probs=141.6
Q ss_pred CcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeec
Q 042958 123 LKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGY 202 (1075)
Q Consensus 123 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 202 (1075)
|++|+|++|++++..+..+..+++|++|++++|.+.++.+..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 44444444444433333344444444444444444444455678888888888888988888888888888999999999
Q ss_pred cccccccCCCCcCCCCcCceeccccCCCCC-CcccccCCCCCCeEeccCCCCCCccCCCCccccccc----ccccccccC
Q 042958 203 NKFSGSIPHSLGNLTNLATLYLHNNSLFDS-IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLA----TLYLYENSL 277 (1075)
Q Consensus 203 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~n~l 277 (1075)
|++++..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 888877666788888888888888888764 577888888888888888888876667777777776 666777777
Q ss_pred cCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccC
Q 042958 278 SGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSG 327 (1075)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 327 (1075)
++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 190 ~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 190 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 7544444433 367777777777776655566666677777777766664
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=227.33 Aligned_cols=203 Identities=30% Similarity=0.304 Sum_probs=125.3
Q ss_pred CccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecc
Q 042958 74 HLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALY 153 (1075)
Q Consensus 74 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 153 (1075)
..+.+|+++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~------------- 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI------------- 80 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-------------
Confidence 3567777777776 4665554 56777777777776555556667777777777776666433333
Q ss_pred cccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCC
Q 042958 154 SNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSI 233 (1075)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (1075)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..
T Consensus 81 -----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 81 -----------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp -----------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 444555555555555555544445555555555555555555555555555666666666666665544
Q ss_pred cccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCC
Q 042958 234 PSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNG 303 (1075)
Q Consensus 234 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 303 (1075)
+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+..
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 4455666666666666666665555556666667777777777765555567777777777777777653
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-24 Score=234.15 Aligned_cols=225 Identities=27% Similarity=0.315 Sum_probs=133.1
Q ss_pred ccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeee
Q 042958 313 TNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSL 392 (1075)
Q Consensus 313 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 392 (1075)
.++..+++.++.+... ..+..+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3444445555444422 223445555555665555542 1 2355556666666666665432 24556666666666
Q ss_pred ccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccC
Q 042958 393 GYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGS 472 (1075)
Q Consensus 393 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 472 (1075)
++|++++..+..|..+++|++|++++|++++..+..|+.+++|++|++++|++++..+..|+++++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 66666655555566666666666666666665555566666666666666666655555566666666666666666655
Q ss_pred CCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCccc
Q 042958 473 IPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLG 550 (1075)
Q Consensus 473 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~ 550 (1075)
.+..++.+++|+.|++++|++++..+..++.+++|+.|++++|++.+. +++|+.+++..|+++|.+|.++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 555566666666666666666666665666666666666666665432 33455556666666555555443
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.2e-24 Score=233.76 Aligned_cols=209 Identities=28% Similarity=0.328 Sum_probs=112.8
Q ss_pred CCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccce
Q 042958 118 GHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSM 197 (1075)
Q Consensus 118 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 197 (1075)
..+++|++|++++|.++. + ..+..+++|++|++++|.+.++ +.+..+++|++|++++|.+++..+..|..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344444444444444431 1 1233344444444444444332 23555555566666666555555555555556666
Q ss_pred EeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccC
Q 042958 198 LSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSL 277 (1075)
Q Consensus 198 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 277 (1075)
|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666665554455555555666666666655554444555566666666666666655455555556666666666666
Q ss_pred cCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccccc
Q 042958 278 SGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLR 337 (1075)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 337 (1075)
++..+..|..+++|+.|++++|.+.+. +++|+.|++..|.++|.+|..++.+.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 655555556666666666666655432 33555666666666665555555443
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.2e-23 Score=225.86 Aligned_cols=203 Identities=30% Similarity=0.314 Sum_probs=115.9
Q ss_pred cCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcc
Q 042958 69 FSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLN 148 (1075)
Q Consensus 69 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 148 (1075)
++++++++.+++++++++ .+|..+. +++++|+|++|.+++..|..|.++++|++|+|++|++++. +
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~---------- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q---------- 71 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E----------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-c----------
Confidence 445566666666666665 4554443 4666666666666655555666666666666666665532 1
Q ss_pred eeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccC
Q 042958 149 YLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNS 228 (1075)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 228 (1075)
+ .+.+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 72 -------------~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 72 -------------V--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp -------------C--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred -------------C--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 1 134444555555555554 234445555555555555555554444555555555566666655
Q ss_pred CCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCC
Q 042958 229 LFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLN 302 (1075)
Q Consensus 229 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 302 (1075)
+++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|.+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55544455555666666666666666444445555666666666666666 34555555566667777766664
No 330
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.8e-23 Score=221.60 Aligned_cols=190 Identities=27% Similarity=0.274 Sum_probs=104.4
Q ss_pred CCccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCC
Q 042958 36 PCAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPP 115 (1075)
Q Consensus 36 ~c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 115 (1075)
||.|.|++|... ...++++++++.. +|..+. ++|++|+|++|.+++..|.
T Consensus 4 Cp~~~gC~C~~~--~~~l~~~~~~l~~--------------------------~p~~~~--~~l~~L~L~~n~l~~~~~~ 53 (251)
T 3m19_A 4 CETVTGCTCNEG--KKEVDCQGKSLDS--------------------------VPSGIP--ADTEKLDLQSTGLATLSDA 53 (251)
T ss_dssp CHHHHSSEEEGG--GTEEECTTCCCSS--------------------------CCSCCC--TTCCEEECTTSCCCCCCTT
T ss_pred CCCCCceEcCCC--CeEEecCCCCccc--------------------------cCCCCC--CCCCEEEccCCCcCccCHh
Confidence 358999999532 2234555555443 333332 3444555555555444444
Q ss_pred CCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCcccc
Q 042958 116 EIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSL 195 (1075)
Q Consensus 116 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 195 (1075)
.|.++++|++|+|++|++++..|..+..+++|++|++++|.++++.+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 45555555555555555554444444444444444444444444444455556666666666666665555555666666
Q ss_pred ceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC
Q 042958 196 SMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 196 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666666666665444556666666666666666665555556666666666666666654
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.8e-23 Score=225.46 Aligned_cols=203 Identities=24% Similarity=0.226 Sum_probs=168.9
Q ss_pred CCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccce
Q 042958 118 GHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSM 197 (1075)
Q Consensus 118 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 197 (1075)
+++++|+++++++|+++ .+|..+. +++++|++++|.+.++.+..|..+++|++|+|++|.+++..+ .+.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 34445555555555554 3343332 455566666666666666678889999999999999987544 378999999
Q ss_pred EeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccC
Q 042958 198 LSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSL 277 (1075)
Q Consensus 198 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 277 (1075)
|+|++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999998 7888999999999999999999988888999999999999999999988788899999999999999999
Q ss_pred cCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccC
Q 042958 278 SGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSG 327 (1075)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 327 (1075)
++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|.+..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9877778899999999999999999 567777788899999999999874
No 332
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=232.85 Aligned_cols=201 Identities=20% Similarity=0.175 Sum_probs=141.9
Q ss_pred CCCcEEEccCcccCCCCCccc--cccCCcceeecccccccCCCC----CCCCCCCCCCEEEcCCCCCCCCCCccccCccc
Q 042958 121 SYLKTLQLFENQLNGSIPYEI--GRLSSLNYLALYSNYLEDLIP----PSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRS 194 (1075)
Q Consensus 121 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 194 (1075)
++|++|+|++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|++++..+..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555555 555555555555555554333 23456777888888888887777777778888
Q ss_pred cceEeeeccccccc--c--CCCCcCCCCcCceeccccCCCCCCcc----cccCCCCCCeEeccCCCCCCccCCCCccc--
Q 042958 195 LSMLSLGYNKFSGS--I--PHSLGNLTNLATLYLHNNSLFDSIPS----ELGNLRSLSMLSLGYNKLSGSIPHSLGNL-- 264 (1075)
Q Consensus 195 L~~L~Ls~N~l~~~--~--~~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-- 264 (1075)
|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 88888888876542 1 2334677888888888888863 233 24677888888888888887767777666
Q ss_pred -ccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccC
Q 042958 265 -TNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSG 327 (1075)
Q Consensus 265 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 327 (1075)
++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|+|++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 5566654 7888899999988865 33 6778888999999988873
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.2e-25 Score=250.10 Aligned_cols=260 Identities=23% Similarity=0.243 Sum_probs=131.4
Q ss_pred eeeccccccccCChhhccCCCCCeEEeeccccccccc----ccccccc-ccceecccccccccCCCCCCccc-----ccc
Q 042958 390 LSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIP----SEFGNLR-SLSTLSLGYNKLSGSIPHSLGNL-----TNL 459 (1075)
Q Consensus 390 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L 459 (1075)
+++++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555444444445555555555554444 4444454 55555555555554444444443 555
Q ss_pred ccccccCCccccCCCccccC----c-CCCCEEeCCCCcccCCCcccccC-----CCccceeeccCCCCCCCCCccccCcc
Q 042958 460 DALYLYDNSLSGSIPGEIGN----L-RSISNLALNNNKLSGSIPQSLGN-----LSNLVILYLYNNSLFDSIPSELGNLR 529 (1075)
Q Consensus 460 ~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~l~~l~ 529 (1075)
++|+|++|++++..+..+.. + ++|++|+|++|++++..+..+.. .++|+.|+|++|.+++..+..+...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 55555555555444443322 2 56666666666665544433322 2466666666666654332222110
Q ss_pred ccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccccccCcc-cccceeecCCCccc
Q 042958 530 SLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSL-AQLEHLDLSSNRLS 608 (1075)
Q Consensus 530 ~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~ 608 (1075)
+ ...|.++++|+|++|++++..+..++.. +..+ ++|++|||++|+|+
T Consensus 162 -----------l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 -----------L-AAIPANVNSLNLRGNNLASKNCAELAKF--------------------LASIPASVTSLDLSANLLG 209 (362)
T ss_dssp -----------H-HTSCTTCCEEECTTSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECTTSCGG
T ss_pred -----------H-hcCCccccEeeecCCCCchhhHHHHHHH--------------------HHhCCCCCCEEECCCCCCC
Confidence 0 0122345555555665555444443321 2223 36667777777766
Q ss_pred Cc----cccccccc-ccceEEEccccccccccch----hcccccccceeeeccccccCchhh-------hhcccccccee
Q 042958 609 NS----IPKSFGNL-VKLHYLNLSNNQFSRGIPI----KLEELIHLSELDLSHNFLREAIPS-------QICIMQSLENL 672 (1075)
Q Consensus 609 ~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~~~-------~~~~~~~L~~L 672 (1075)
+. ++..+..+ ++|++|+|++|++++..+. .+..+++|++|+|++|.+.+..+. .+..+++|+.|
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 42 44444442 3677777777776654432 234556666677766664443322 33344455555
Q ss_pred ecCCCccccC
Q 042958 673 NLSHNSLVGL 682 (1075)
Q Consensus 673 ~ls~N~l~~~ 682 (1075)
|+++|++...
T Consensus 290 dL~~N~l~~~ 299 (362)
T 3goz_A 290 DKNGKEIHPS 299 (362)
T ss_dssp CTTSCBCCGG
T ss_pred ecCCCcCCCc
Confidence 5555555444
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.3e-25 Score=249.18 Aligned_cols=233 Identities=18% Similarity=0.180 Sum_probs=112.9
Q ss_pred CCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCC-CCccccccCCcceeecccccccCCCCCCCCCCCCCCEEE
Q 042958 97 SRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGS-IPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLH 175 (1075)
Q Consensus 97 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (1075)
+++++|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4444444444444433332 33445555555555544433 333444444444444444444444444455555666666
Q ss_pred cCCC-CCCCC-CCccccCccccceEeeecc-ccccc-cCCCCcCCC-CcCceecccc--CCC-CCCcccccCCCCCCeEe
Q 042958 176 LYDN-SLSDS-IPSEFGNLRSLSMLSLGYN-KFSGS-IPHSLGNLT-NLATLYLHNN--SLF-DSIPSELGNLRSLSMLS 247 (1075)
Q Consensus 176 L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~ 247 (1075)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6665 45432 3444555566666666666 55532 344455555 6666666665 333 23344455556666666
Q ss_pred ccCCC-CCCccCCCCccccccccccccccc-CcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcc-ccccceeccccc
Q 042958 248 LGYNK-LSGSIPHSLGNLTNLATLYLYENS-LSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNL-TNLATLYIHNNS 324 (1075)
Q Consensus 248 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~ 324 (1075)
+++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +. ...+..+ .+++.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEeccc
Confidence 66665 444444455555555555555553 21111123445555566666555 22 1223333 224445555555
Q ss_pred ccCCCCcccc
Q 042958 325 LSGSIPSEIG 334 (1075)
Q Consensus 325 l~~~~~~~~~ 334 (1075)
+++..|..++
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 5544444443
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.1e-24 Score=244.35 Aligned_cols=262 Identities=19% Similarity=0.237 Sum_probs=190.8
Q ss_pred eEEeeccccccccccccccccccceecccccccccCCC----CCCcccc-ccccccccCCccccCCCccccCc-----CC
Q 042958 413 TLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIP----HSLGNLT-NLDALYLYDNSLSGSIPGEIGNL-----RS 482 (1075)
Q Consensus 413 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 482 (1075)
.++++.|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888887777777778888888888886665 6677777 78888888888887777777665 78
Q ss_pred CCEEeCCCCcccCCCcccccCC-----CccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCC
Q 042958 483 ISNLALNNNKLSGSIPQSLGNL-----SNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSN 557 (1075)
Q Consensus 483 L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N 557 (1075)
|++|+|++|++++..+..++.. ++|+.|+|++|++++..+..+... + ...|.++++|+|++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------------l-~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA------------F-SNLPASITSLNLRGN 148 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH------------H-TTSCTTCCEEECTTS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH------------H-HhCCCceeEEEccCC
Confidence 8888888888876666644433 778888888887765554443221 0 011345666666666
Q ss_pred ccccccchhhhhhhHhHHHhhcccccccccccccCccc-ccceeecCCCcccCcccccccc----c-ccceEEEcccccc
Q 042958 558 HIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLA-QLEHLDLSSNRLSNSIPKSFGN----L-VKLHYLNLSNNQF 631 (1075)
Q Consensus 558 ~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l 631 (1075)
.++...+..+. ..+..++ +|++|+|++|+|++..+..+.. + ++|++|+|++|+|
T Consensus 149 ~l~~~~~~~l~--------------------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 149 DLGIKSSDELI--------------------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp CGGGSCHHHHH--------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred cCCHHHHHHHH--------------------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 66543333322 2233344 8999999999999877765544 4 6999999999999
Q ss_pred ccc----cchhcccc-cccceeeeccccccCchhhh----hccccccceeecCCCccccCChh-------hhcccccccE
Q 042958 632 SRG----IPIKLEEL-IHLSELDLSHNFLREAIPSQ----ICIMQSLENLNLSHNSLVGLIPS-------CFEKMHGLLR 695 (1075)
Q Consensus 632 ~~~----~p~~~~~l-~~L~~L~ls~N~l~~~~~~~----~~~~~~L~~L~ls~N~l~~~~p~-------~~~~~~~l~~ 695 (1075)
++. ++..+..+ ++|++|||++|++++..+.. +..+++|+.|++++|.+.+..+. .+..+++|+.
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 873 45566654 59999999999999866533 45678999999999997665544 5678889999
Q ss_pred EeecCCccCCCC
Q 042958 696 IDISYNELQGPI 707 (1075)
Q Consensus 696 l~~s~N~~~~~~ 707 (1075)
||+++|++....
T Consensus 289 LdL~~N~l~~~~ 300 (362)
T 3goz_A 289 VDKNGKEIHPSH 300 (362)
T ss_dssp ECTTSCBCCGGG
T ss_pred EecCCCcCCCcc
Confidence 999999987653
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=9.2e-23 Score=217.71 Aligned_cols=178 Identities=23% Similarity=0.305 Sum_probs=90.9
Q ss_pred cCcEEEccCCCCCCCcCCCCCccccccceeccccc-ccCCCCcccccccccccccccC-CcccccCCCcCCCCCCcceee
Q 042958 290 SLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNS-LSGSIPSEIGNLRSLSNLGLSG-NKLSGSIPPSLGYLSNLATLY 367 (1075)
Q Consensus 290 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~l~~l~~L~~L~ 367 (1075)
+|++|++++|+++++.+..|.++++|++|++++|. ++...+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666664 5544445555566666666655 555544444555555555555
Q ss_pred ccccccCCCCccccCCCcccc---eeeeccc-cccccCChhhccCCCCC-eEEeeccccccccccccccccccceecccc
Q 042958 368 LYSNSLFDSIPSELGNLRSLS---MLSLGYN-KLSGSIPHSLGNLTNLA-TLDLYDNSLSGSIPSEFGNLRSLSTLSLGY 442 (1075)
Q Consensus 368 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 442 (1075)
+++|.+.+ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++.+.+..|.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555533 333 44444444 5555555 44444444444444554 5555555444333333333 4444444444
Q ss_pred cc-cccCCCCCCccc-cccccccccCCccc
Q 042958 443 NK-LSGSIPHSLGNL-TNLDALYLYDNSLS 470 (1075)
Q Consensus 443 N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~ 470 (1075)
|+ +++..+..|.++ ++|+.|++++|+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 443333444444 44444444444444
No 337
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.6e-25 Score=251.17 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=57.2
Q ss_pred ccCcccccceeecCCCccc----CcccccccccccceEEEccccccccc----cchhccc--ccccceeeeccccccC--
Q 042958 590 KLGSLAQLEHLDLSSNRLS----NSIPKSFGNLVKLHYLNLSNNQFSRG----IPIKLEE--LIHLSELDLSHNFLRE-- 657 (1075)
Q Consensus 590 ~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~ls~N~l~~-- 657 (1075)
.+..+++|++|+|++|.|+ +.+|..+..+++|++|+|++|+|++. +|..+.. +++|+.|+|++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 4555666666666666664 45566666666666666666666554 3444422 6666666666666665
Q ss_pred --chhhhh-ccccccceeecCCCccccCCh
Q 042958 658 --AIPSQI-CIMQSLENLNLSHNSLVGLIP 684 (1075)
Q Consensus 658 --~~~~~~-~~~~~L~~L~ls~N~l~~~~p 684 (1075)
.+|..+ ..+++|+.|++++|++++..|
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 355555 445666666666666665553
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.2e-22 Score=216.93 Aligned_cols=177 Identities=22% Similarity=0.280 Sum_probs=76.7
Q ss_pred cceeecccccccCCCCCCCCCCCCCCEEEcCCCC-CCCCCCccccCccccceEeeec-cccccccCCCCcCCCCcCceec
Q 042958 147 LNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNS-LSDSIPSEFGNLRSLSMLSLGY-NKFSGSIPHSLGNLTNLATLYL 224 (1075)
Q Consensus 147 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L 224 (1075)
|++|++++|.++++.+..|.++++|++|++++|+ ++.+.+..|.++++|++|++++ |++++..+..|.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3333333333333333344444455555555553 4444444445555555555554 4554444444444455555555
Q ss_pred cccCCCCCCcccccCCCCCC---eEeccCC-CCCCccCCCCccccccc-ccccccccCcCCCCcccCCCccCcEEEccCC
Q 042958 225 HNNSLFDSIPSELGNLRSLS---MLSLGYN-KLSGSIPHSLGNLTNLA-TLYLYENSLSGSIPSEFGNLRSLSMLNLGYN 299 (1075)
Q Consensus 225 ~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 299 (1075)
++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ +|++++|.++...+..|.. ++|+.|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 5554443 232 44444444 4444444 44433333344444444 4444444444222222222 34444444444
Q ss_pred C-CCCCcCCCCCcc-ccccceeccccccc
Q 042958 300 K-LNGIIPHSLGNL-TNLATLYIHNNSLS 326 (1075)
Q Consensus 300 ~-l~~~~~~~~~~l-~~L~~L~L~~N~l~ 326 (1075)
+ ++++.+..|.++ ++|++|++++|+++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2 443333344444 44444444444444
No 339
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.88 E-value=5e-24 Score=255.03 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=117.7
Q ss_pred eecccCceEEEEE-EECCCCEEEEEEccCCCCC-------chhHHHHHHHHHHHHhcC-CcCceeeEEEEeeccccchh-
Q 042958 822 CIGKGGQGSVYKA-ELASGEIVAVKKFHSPLPG-------EMTFQQEFLNEVKALTEI-RHRNIVKFYGFCSHVRHSLA- 891 (1075)
Q Consensus 822 ~lG~G~~g~Vy~~-~~~~g~~vavK~~~~~~~~-------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~l~- 891 (1075)
..+.|++|.++.+ +...|+.||||++.+.... .....++|.+|+++|+++ .|+||+++++|+++.+..+.
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 3567777777776 4456999999999764221 122346799999999999 79999999999987655432
Q ss_pred heecCc-------cccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCC
Q 042958 892 MILSNN-------AAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSS 964 (1075)
Q Consensus 892 ~~~~~~-------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 964 (1075)
|.+... .....++.. +|+.||++||+|+|++ +||||||||+|||++.++.+||+|||+|+....+..
T Consensus 321 MEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~ 394 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS 394 (569)
T ss_dssp EECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---C
T ss_pred EecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCCCc
Confidence 222221 123445543 5899999999999999 999999999999999999999999999998776655
Q ss_pred ceeccccccCccCccccccCCCCcccchHhHHHHHHHHHhCCCC
Q 042958 965 NWTELAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHP 1008 (1075)
Q Consensus 965 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p 1008 (1075)
.....+||+.|||||++.+. +..++|+||+|++++++.++..+
T Consensus 395 ~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 395 WPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred cccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 56677899999999998764 67789999999998887665444
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.3e-24 Score=245.70 Aligned_cols=269 Identities=18% Similarity=0.230 Sum_probs=189.1
Q ss_pred CeEEeeccccccccccccccccccceecccccccccCC----CCCCccccccccccccCC---ccccCCCccc-------
Q 042958 412 ATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSI----PHSLGNLTNLDALYLYDN---SLSGSIPGEI------- 477 (1075)
Q Consensus 412 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N---~l~~~~p~~~------- 477 (1075)
+...++...+. .++..+..+++|++|+|++|.+++.. +..|..+++|++|+|++| ++++.+|..+
T Consensus 12 ~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 12 KLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp EESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred ccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 33333444443 45566777888888888888887653 344667888888888885 4444555544
Q ss_pred cCcCCCCEEeCCCCcccC----CCcccccCCCccceeeccCCCCCCCCCccccCccccccccccccccccccCCcccccc
Q 042958 478 GNLRSISNLALNNNKLSG----SIPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLD 553 (1075)
Q Consensus 478 ~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~ 553 (1075)
..+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++..+..+... |. .+..|++++.. ++|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~--~l~~~~~~~~~-~~L~~L~ 165 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQ--ELAVNKKAKNA-PPLRSII 165 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HH--HHHHHHHHHTC-CCCCEEE
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HH--HHhhhhhcccC-CCCcEEE
Confidence 567778888888887776 356667777777777777777754333333221 00 01122222211 3455556
Q ss_pred cCCCcccc-ccchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccC-----cccccccccccceEEEcc
Q 042958 554 LSSNHIVG-EIPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSN-----SIPKSFGNLVKLHYLNLS 627 (1075)
Q Consensus 554 Ls~N~l~~-~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls 627 (1075)
|++|+++. .+|. +...+..+++|++|+|++|+|+. .+|..+..+++|++|+|+
T Consensus 166 L~~n~l~~~~~~~---------------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 166 CGRNRLENGSMKE---------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224 (386)
T ss_dssp CCSSCCTGGGHHH---------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECC
T ss_pred CCCCCCCcHHHHH---------------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECc
Confidence 66655541 1111 11345667899999999999973 455588999999999999
Q ss_pred ccccc----cccchhcccccccceeeeccccccCc----hhhhhc--cccccceeecCCCcccc----CChhhh-ccccc
Q 042958 628 NNQFS----RGIPIKLEELIHLSELDLSHNFLREA----IPSQIC--IMQSLENLNLSHNSLVG----LIPSCF-EKMHG 692 (1075)
Q Consensus 628 ~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~----~~~~~~--~~~~L~~L~ls~N~l~~----~~p~~~-~~~~~ 692 (1075)
+|+++ +.+|..+..+++|+.|+|++|+|++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 99996 67888999999999999999999986 566663 38999999999999998 578877 67899
Q ss_pred ccEEeecCCccCCCC
Q 042958 693 LLRIDISYNELQGPI 707 (1075)
Q Consensus 693 l~~l~~s~N~~~~~~ 707 (1075)
|+.|++++|++++..
T Consensus 305 L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 305 LLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTSBSCTTS
T ss_pred ceEEEccCCcCCcch
Confidence 999999999988654
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=225.18 Aligned_cols=226 Identities=20% Similarity=0.164 Sum_probs=190.1
Q ss_pred CCCccEEEccCCCccCC-CCc--cccccCCCceeecccCcccccCCCCC--CCCCCCcEEEccCcccCCCCC----cccc
Q 042958 72 FPHLAYLDLWHNQLYGN-IPP--QIGNISRLKYLDLSSNLFFGTIPPEI--GHLSYLKTLQLFENQLNGSIP----YEIG 142 (1075)
Q Consensus 72 l~~L~~L~L~~n~l~~~-~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~ 142 (1075)
-..++.|++.++.++.. +.. ....+++|++|+|++|.+++.+|..+ ..+++|++|+|++|++++..| ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578899998887532 111 12345779999999999999999998 999999999999999998666 3456
Q ss_pred ccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCC---C-CccccCccccceEeeeccccccccCC----CCc
Q 042958 143 RLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDS---I-PSEFGNLRSLSMLSLGYNKFSGSIPH----SLG 214 (1075)
Q Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~ 214 (1075)
.+++|++|++++|.+.+..+..|+.+++|++|+|++|++.+. . +..++.+++|++|+|++|+++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 799999999999999999999999999999999999998752 2 2335789999999999999973 332 357
Q ss_pred CCCCcCceeccccCCCCCCcccccCC---CCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccC
Q 042958 215 NLTNLATLYLHNNSLFDSIPSELGNL---RSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSL 291 (1075)
Q Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 291 (1075)
.+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 88999999999999998878877776 69999999999999 6777775 7999999999999964 43 7888999
Q ss_pred cEEEccCCCCCC
Q 042958 292 SMLNLGYNKLNG 303 (1075)
Q Consensus 292 ~~L~Ls~N~l~~ 303 (1075)
+.|+|++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999974
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.2e-22 Score=220.91 Aligned_cols=170 Identities=30% Similarity=0.428 Sum_probs=75.0
Q ss_pred CCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 71 SFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
.+++|++|++++|.++ .+| .+..+++|++|+|++|.+++. +. +.++++|++|+|++|++++. | .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 3455555555555554 233 355555555555555555432 22 55555555555555555431 1 34444444444
Q ss_pred ecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCC
Q 042958 151 ALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (1075)
++++|.++++.+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 444444444322 4444444444444444443322 3444444444444444432211 334444444444444443
Q ss_pred CCCcccccCCCCCCeEeccCCCCC
Q 042958 231 DSIPSELGNLRSLSMLSLGYNKLS 254 (1075)
Q Consensus 231 ~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (1075)
+..+ +..+++|++|++++|+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCC
T ss_pred cChh--hcCCCCCCEEEccCCccC
Confidence 2211 333444444444444443
No 343
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.2e-21 Score=202.13 Aligned_cols=183 Identities=24% Similarity=0.260 Sum_probs=123.3
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|.+|.|+..+ +.. ++ ..-.++|++|+|++|++++..+..++.+++|++|+|++|.+++..+..
T Consensus 7 C~~~~v~c~~~~-----------l~~-~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 7 CSGTTVECYSQG-----------RTS-VP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp EETTEEECCSSC-----------CSS-CC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred ECCCEEEecCCC-----------ccC-CC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 899999997532 211 12 122467888888888888666666788888888888888888655566
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccc
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLS 196 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 196 (1075)
|.++++|++|+|++|++++..+..+..+++|++|++++|.++++.+..|..+++|++|++++|++++..+..|..+++|+
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 78888888888888888865555566666777777776666666666666666666666666666665555566666666
Q ss_pred eEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCC
Q 042958 197 MLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLR 241 (1075)
Q Consensus 197 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (1075)
+|++++|.+.+ .+++|++|+++.|++++.+|..++.++
T Consensus 152 ~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 152 YIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 66666665542 234556666666666655555555443
No 344
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.5e-21 Score=206.98 Aligned_cols=180 Identities=26% Similarity=0.273 Sum_probs=108.4
Q ss_pred CCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcC
Q 042958 98 RLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLY 177 (1075)
Q Consensus 98 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (1075)
..++++++++.++ .+|..+. +.|++|+|++|++++..|.. |.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~L~ 67 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT------------------------FRGLTKLTWLNLD 67 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT------------------------TTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH------------------------hcCcccCCEEECC
Confidence 3455666666665 4554443 45566666666655544444 5555555555555
Q ss_pred CCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCcc
Q 042958 178 DNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSI 257 (1075)
Q Consensus 178 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (1075)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 55555555555555555555555555555444555555666666666666665554555566666666666666666555
Q ss_pred CCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCC
Q 042958 258 PHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGI 304 (1075)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 304 (1075)
+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55666666677777777777665566677777777777777777643
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.3e-21 Score=219.40 Aligned_cols=240 Identities=18% Similarity=0.146 Sum_probs=112.9
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.++.++++++ .||..+ .+++++|+|++|.|+...+.+|.++++|++|+|++|++.+.+|.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------------- 72 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---------------- 72 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----------------
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----------------
Confidence 34555555555 455444 23555555555555533333455555555555555555433332
Q ss_pred cccCCCCCCCCCCCCCCE-EEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccc-cCCCCCC
Q 042958 156 YLEDLIPPSLGNLSNLDT-LHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHN-NSLFDSI 233 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~ 233 (1075)
..|.+++++++ +.++.|+++.+.|..|..+++|++|++++|+++...+..+....++..|++.+ +++....
T Consensus 73 -------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 73 -------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp -------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred -------hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 22344444332 33334444444444455555555555555555443333444444444444433 3343333
Q ss_pred cccccCCC-CCCeEeccCCCCCCccCCCCccccccccccccc-ccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCc
Q 042958 234 PSELGNLR-SLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYE-NSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGN 311 (1075)
Q Consensus 234 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 311 (1075)
+..|..+. .++.|+|++|+++. ++.......+|++|++.+ |.++.+.+.+|.++++|++|+|++|+|+.+.+..|.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 33344332 45555666666653 333333334555555543 4444333345555666666666666665544444544
Q ss_pred cccccceecccccccCCCCcccccccccccccccC
Q 042958 312 LTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSG 346 (1075)
Q Consensus 312 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 346 (1075)
+++|+.+++. .+. .+| .+..+++|+.+++++
T Consensus 225 L~~L~~l~~~--~l~-~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTY--NLK-KLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCT--TCC-CCC-CTTTCCSCCEEECSC
T ss_pred chHhhhccCC--CcC-cCC-CchhCcChhhCcCCC
Confidence 4444444332 222 233 244455555555544
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.3e-21 Score=218.09 Aligned_cols=238 Identities=19% Similarity=0.205 Sum_probs=141.9
Q ss_pred cEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCC-CccccCccccce-Eeee
Q 042958 124 KTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSI-PSEFGNLRSLSM-LSLG 201 (1075)
Q Consensus 124 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~Ls 201 (1075)
++++.++++++ .+|..+ .+++++|+|++|.|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 455443 245666666666666666666778888888888888876544 356777777664 5566
Q ss_pred ccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccC-CCCCCccCCCCcccc-cccccccccccCcC
Q 042958 202 YNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGY-NKLSGSIPHSLGNLT-NLATLYLYENSLSG 279 (1075)
Q Consensus 202 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 279 (1075)
.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677777788888888888877766555566666677777754 455544444555543 46666666666664
Q ss_pred CCCcccCCCccCcEEEccC-CCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCC
Q 042958 280 SIPSEFGNLRSLSMLNLGY-NKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLG 358 (1075)
Q Consensus 280 ~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~ 358 (1075)
+.+..| ...+|+.|++++ |.++.+.+.+|.++++|++|+|++|+|+...+..|.++++|+.+++. .++ .+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~-~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK-KLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCC-CCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcC-cCC-Cch
Confidence 333333 345566666653 55555545566666666666666666665444445444444444332 222 233 244
Q ss_pred CCCCcceeecc
Q 042958 359 YLSNLATLYLY 369 (1075)
Q Consensus 359 ~l~~L~~L~L~ 369 (1075)
.+++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 44455555444
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.2e-21 Score=217.22 Aligned_cols=212 Identities=26% Similarity=0.368 Sum_probs=182.7
Q ss_pred ccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeeccc
Q 042958 75 LAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYS 154 (1075)
Q Consensus 75 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (1075)
+..+.+..+.+++.++ +.++++|++|++++|.+. .+| .+..+++|++|+|++|++++..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 3344556666664433 568999999999999998 455 68999999999999999996544 99999999999999
Q ss_pred ccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCc
Q 042958 155 NYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIP 234 (1075)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (1075)
|.+.++ +.+..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+
T Consensus 95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence 999986 369999999999999999997543 9999999999999999986544 8899999999999999986443
Q ss_pred ccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCC
Q 042958 235 SELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGI 304 (1075)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 304 (1075)
+..+++|++|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 8999999999999999996544 889999999999999999755 489999999999999999854
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.2e-23 Score=232.82 Aligned_cols=249 Identities=19% Similarity=0.210 Sum_probs=130.0
Q ss_pred CcEEEccCCCCCCCcCCCCCcc--ccccceecccccccCCCCcccccccccccccccCCccccc-CCCcCCCCCCcceee
Q 042958 291 LSMLNLGYNKLNGIIPHSLGNL--TNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGS-IPPSLGYLSNLATLY 367 (1075)
Q Consensus 291 L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~l~~l~~L~~L~ 367 (1075)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555443 2333334 4555555555555543333 33455555555555555433 444455555555556
Q ss_pred ccccccCCCCccccCCCcccceeeeccc-cccc-cCChhhccCCCCCeEEeecc-ccccc-ccccccccc-ccceecccc
Q 042958 368 LYSNSLFDSIPSELGNLRSLSMLSLGYN-KLSG-SIPHSLGNLTNLATLDLYDN-SLSGS-IPSEFGNLR-SLSTLSLGY 442 (1075)
Q Consensus 368 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~ 442 (1075)
+++|.+.+..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555555455555555666666666666 4443 24444555666666666666 55543 344555566 666666666
Q ss_pred c--ccc-cCCCCCCccccccccccccCCc-cccCCCccccCcCCCCEEeCCCCc-ccCCCcccccCCCccceeeccCCCC
Q 042958 443 N--KLS-GSIPHSLGNLTNLDALYLYDNS-LSGSIPGEIGNLRSISNLALNNNK-LSGSIPQSLGNLSNLVILYLYNNSL 517 (1075)
Q Consensus 443 N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 517 (1075)
| .++ +.+|..+.++++|++|++++|. +++..+..+..+++|+.|++++|. +.......++++++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 6 333 2344455556666666666666 554555566666666666666664 22111224556666666666666 3
Q ss_pred CCCCCccccCc-cccccccccccccccccCC
Q 042958 518 FDSIPSELGNL-RSLSMLSFAYNKLSGSIPH 547 (1075)
Q Consensus 518 ~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~ 547 (1075)
+. +.+..+ .++..|++++|++++..|+
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCC
Confidence 22 122222 2244444555555544443
No 349
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.9e-21 Score=228.31 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=107.6
Q ss_pred ccceE-EeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 38 AWVGI-HCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 38 ~w~gv-~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
.|.|+ .|.. ++++.|+|+++++.+ ++.. + +++|++|+|++|+|+ .+| +.+++|++|+|++|.|++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 79999 6753 456666666666665 3332 2 255666666666665 455 335566666666666654 554
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccc
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLS 196 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 196 (1075)
+.+ +|++|+|++|+|++ +|. .+++|++|++++|.++++++ .+++|++|+|++|++++
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~------------- 174 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF------------- 174 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-------------
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-------------
Confidence 443 56666666666654 443 34455555555555544222 33444444444444444
Q ss_pred eEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCC-------CeEeccCCCCCCccCCCCcccccccc
Q 042958 197 MLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSL-------SMLSLGYNKLSGSIPHSLGNLTNLAT 269 (1075)
Q Consensus 197 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~ 269 (1075)
+|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+++ .+|..+..+++|+.
T Consensus 175 ------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 175 ------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp ------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred ------------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 333 33 44555555555554 2333 322 34 66666666666 45555656666666
Q ss_pred cccccccCcCCCCcccCCCc
Q 042958 270 LYLYENSLSGSIPSEFGNLR 289 (1075)
Q Consensus 270 L~L~~n~l~~~~~~~~~~l~ 289 (1075)
|+|++|.+++.+|..|..++
T Consensus 235 L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EECCSSSCCHHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHhh
Confidence 66666666666665555443
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.5e-20 Score=191.53 Aligned_cols=181 Identities=23% Similarity=0.243 Sum_probs=101.9
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..++++++|++|+|++|++++..+..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------- 71 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--------------- 71 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------------
Confidence 45667776665 455443 346677777777766554555666666666666666666433333
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcc
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPS 235 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (1075)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+.
T Consensus 72 ---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 72 ---------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp ---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 44455555555555555544444455555555555555555544444455555555555555555544444
Q ss_pred cccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCcc
Q 042958 236 ELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRS 290 (1075)
Q Consensus 236 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 290 (1075)
.+..+++|++|++++|.+.+ .+++|++|+++.|.++|.+|..++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45556666666666665543 2335666666666666666665554443
No 351
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.82 E-value=3.7e-21 Score=228.94 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCCceecccCceEEEEEEECCCCEEEEEEccCCCCCch-----hHHHHHHHHHHHHhcCCcCceeeEEEEeeccccchhh
Q 042958 818 DDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEM-----TFQQEFLNEVKALTEIRHRNIVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 818 ~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~l~~ 892 (1075)
...+.||+|+||.||+|... ++.+|+|+......... ...+++.+|++++++++||||+++..++...+.. ++
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~-~l 416 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNK-RI 416 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTT-EE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCcc-EE
Confidence 34578999999999999544 88899998654332221 1245689999999999999999554444433322 23
Q ss_pred eecCccccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCc----
Q 042958 893 ILSNNAAAK---DLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSN---- 965 (1075)
Q Consensus 893 ~~~~~~~~~---~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~---- 965 (1075)
+++....+. .+.. +..++.|+++||+|||++ +|+||||||+||+++. .+||+|||+|+........
T Consensus 417 VmE~~~ggsL~~~l~~--~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~ 489 (540)
T 3en9_A 417 MMSYINGKLAKDVIED--NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDL 489 (540)
T ss_dssp EEECCCSEEHHHHSTT--CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCccccccch
Confidence 333222111 1111 568999999999999999 9999999999999998 9999999999987643221
Q ss_pred ---eeccccccCccCcccccc--CCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 966 ---WTELAGTYGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 966 ---~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
.....||+.|||||++.. ..|+..+|+|+..+-..+.+.++.+|.
T Consensus 490 ~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 490 IVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred hhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 135679999999999987 568888999999999999888887763
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=5.7e-20 Score=218.35 Aligned_cols=189 Identities=28% Similarity=0.355 Sum_probs=131.0
Q ss_pred CCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcC
Q 042958 98 RLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLY 177 (1075)
Q Consensus 98 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (1075)
+|++|+|++|.+++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|++++|.++++ |. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 34444444444432 333331 34444444444444 333 2244455555555555442 22 443 78888888
Q ss_pred CCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCcc
Q 042958 178 DNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSI 257 (1075)
Q Consensus 178 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (1075)
+|++++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|++++ +|. |. ++|++|+|++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888876 444 57888999999999885 555 57899999999999987 666 66 99999999999999 66
Q ss_pred CCCCcccccc-------cccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcccc
Q 042958 258 PHSLGNLTNL-------ATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTN 314 (1075)
Q Consensus 258 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 314 (1075)
|. |.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|.+++..|..|..++.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 76 665 77 99999999999 57888888999999999999999988887766544
No 353
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.6e-20 Score=231.85 Aligned_cols=204 Identities=24% Similarity=0.198 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhccCCCCCCCcCCCCcCCCCCCCC-CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEc
Q 042958 2 EEAHALLRWKTSLQNHNNGSLLSSWTLNNVTKTSP-CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDL 80 (1075)
Q Consensus 2 ~~~~all~~k~~~~~~~~~~~l~sw~~~~~~~~~~-c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L 80 (1075)
.+++||+++..+...... ..-..|.. .+++ +.|.+++++. ++|++++|.++++.+.. ...++.++|
T Consensus 132 ~~~~~l~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~-------~~~l~~l~L 198 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKT-AKKQQPTG----DSTPSGTATNSAVST-PLTPKIELFANGKDEAN-------QALLQHKKL 198 (727)
T ss_dssp CCCHHHHHHHHHHHHHHT-TC-----------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccC-cccCCCcC----CCCccccCCCceecC-CccceEEeeCCCCCcch-------hhHhhcCcc
Confidence 468899999998854322 23445641 2233 7899998875 67888888777766531 133566666
Q ss_pred cCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCC
Q 042958 81 WHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDL 160 (1075)
Q Consensus 81 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 160 (1075)
+.|.|. .++++.|.+. ..|..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .
T Consensus 199 s~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~ 261 (727)
T 4b8c_D 199 SQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-E 261 (727)
T ss_dssp --------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-C
T ss_pred Cccccc--------------Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-c
Confidence 666654 2344455555 55667777777777777777777 56665555555555555555555 3
Q ss_pred CCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccc
Q 042958 161 IPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSEL 237 (1075)
Q Consensus 161 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (1075)
+|..|+++++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|+++++|++|+|++|.+++.+|..+
T Consensus 262 lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 3444455555555555555555 33444555555555555555544 344444444444444444444444444433
No 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.3e-18 Score=183.84 Aligned_cols=83 Identities=24% Similarity=0.182 Sum_probs=43.2
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|.+|.|+..+ +. .+|.. -.++|++|+|++|.+++..|..++.+++|++|+|++|.|++..+..
T Consensus 19 Cs~~~v~c~~~~-----------l~-~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 19 CSGTTVDCRSKR-----------HA-SVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp EETTEEECTTSC-----------CS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred EeCCEeEccCCC-----------cC-ccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 999999997421 11 12211 1245555555555555555555555555555555555554333333
Q ss_pred CCCCCCCcEEEccCcccC
Q 042958 117 IGHLSYLKTLQLFENQLN 134 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~ 134 (1075)
|.++++|++|+|++|+|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TTTCTTCCEEECCSSCCC
T ss_pred cccCCCcCEEECCCCcCC
Confidence 445555555555555444
No 355
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.2e-21 Score=232.06 Aligned_cols=216 Identities=23% Similarity=0.164 Sum_probs=105.8
Q ss_pred ccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccce
Q 042958 430 GNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVI 509 (1075)
Q Consensus 430 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 509 (1075)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|......|..+ ..+.+.+..|..++++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 45667777777777776 567777777777777775554211111100 011122334444444444444
Q ss_pred ee-ccCCCCCCCCCccccCccccccccccccccccccCCcccccccCCCccccccchhhhhhhHhHHHhhcccccccccc
Q 042958 510 LY-LYNNSLFDSIPSELGNLRSLSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLS 588 (1075)
Q Consensus 510 L~-L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~ 588 (1075)
|+ ++.|.+ .+|+.+.+++|.++...+..+ +.|+|++|+|++ +|
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~~~L------------------------~~L~Ls~n~l~~-lp 457 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEYADV------------------------RVLHLAHKDLTV-LC 457 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHHTTC------------------------SEEECTTSCCSS-CC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCccCc------------------------eEEEecCCCCCC-Cc
Confidence 44 333321 223333333333332111222 233333333332 22
Q ss_pred cccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCch-hhhhcccc
Q 042958 589 PKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAI-PSQICIMQ 667 (1075)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~ 667 (1075)
. ++.+++|+.|+|++|+|+ .+|..|+.+++|++|+|++|+|++ +| .+..+++|+.|+|++|+|++.+ |..+..++
T Consensus 458 ~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 458 H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 2 445555555555555555 455555555555555555555554 34 5555555555555555555544 55555555
Q ss_pred ccceeecCCCccccCChh---hhcccccccEEe
Q 042958 668 SLENLNLSHNSLVGLIPS---CFEKMHGLLRID 697 (1075)
Q Consensus 668 ~L~~L~ls~N~l~~~~p~---~~~~~~~l~~l~ 697 (1075)
+|+.|+|++|+|++.+|. .+..++.|+.||
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 555555555555555432 123345555554
No 356
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.78 E-value=1.1e-19 Score=197.89 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=120.4
Q ss_pred HHHHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCch---------------hHHHHHHHHHHHHhcCC
Q 042958 808 EEIIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEM---------------TFQQEFLNEVKALTEIR 872 (1075)
Q Consensus 808 ~e~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~---------------~~~~~~~~E~~~l~~l~ 872 (1075)
..+......|++.+.||+|+||.||+|...+|+.||||+++....... .....+.+|+.++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 344555667777899999999999999878899999999864321110 13567899999999998
Q ss_pred cCceeeEEEEeeccccchhheecCccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEec
Q 042958 873 HRNIVKFYGFCSHVRHSLAMILSNNAAAKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSD 952 (1075)
Q Consensus 873 h~niv~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 952 (1075)
| +++.+++......+.+.+.....-..+.......++.|+++|++|||+. +|+||||||+||+++ ++.+||+|
T Consensus 163 ~---~~v~~~~~~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~D 235 (282)
T 1zar_A 163 G---LAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIID 235 (282)
T ss_dssp T---SSSCCEEEEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEECC
T ss_pred C---CCcCeEEeccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEEE
Confidence 4 5555555443333333332222222244455668999999999999999 999999999999999 99999999
Q ss_pred cccccccCCCCCceeccccccCccCcccccc----------CCCCcccchHh
Q 042958 953 FGIAKFLKPDSSNWTELAGTYGYVAPELAYT----------MKVTEKCDVYS 994 (1075)
Q Consensus 953 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~s 994 (1075)
||+|+.. ..|+|||++.. .++..++|+|.
T Consensus 236 FG~a~~~-------------~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 236 FPQSVEV-------------GEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp CTTCEET-------------TSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred CCCCeEC-------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 9999743 34788998753 34555566664
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3.1e-19 Score=214.67 Aligned_cols=190 Identities=28% Similarity=0.366 Sum_probs=103.7
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
..+..++|+.+.+.+.++ +..|++|++|++++|.+.. +| .+..+++|++|+|++|++++..| +..+++|++|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 334455566666654433 4567777777777777753 33 46677777777777777765433 566666666666
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCC
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDS 232 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (1075)
++|.+.++ +.+..+++|++|+|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 66666553 2466666666666666666542 2355555555555555555532 3444455555555555555443
Q ss_pred CcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCc
Q 042958 233 IPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLS 278 (1075)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (1075)
.| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|.++
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 33 44444455555544444422 12333444444444444443
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.3e-19 Score=194.81 Aligned_cols=149 Identities=32% Similarity=0.414 Sum_probs=72.4
Q ss_pred cccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCE
Q 042958 94 GNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDT 173 (1075)
Q Consensus 94 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (1075)
..+++|++|++++|.+.. +| .+..+++|++|+|++|++++..+ +..+++|++|++++|.++++. .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence 455555566665555542 22 35555555555555555554322 444555555555555544431 2555555555
Q ss_pred EEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCC
Q 042958 174 LHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKL 253 (1075)
Q Consensus 174 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 253 (1075)
|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 55555555542 2344455555555555555432 334444444444444444443222 44444444444444444
Q ss_pred C
Q 042958 254 S 254 (1075)
Q Consensus 254 ~ 254 (1075)
+
T Consensus 191 ~ 191 (291)
T 1h6t_A 191 S 191 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 359
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3.2e-19 Score=214.54 Aligned_cols=189 Identities=30% Similarity=0.416 Sum_probs=93.5
Q ss_pred cCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeecc
Q 042958 290 SLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLY 369 (1075)
Q Consensus 290 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~ 369 (1075)
.+..++++.+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34445555555553322 3455566666666666553 22 35555555666666555554332 5555555555555
Q ss_pred ccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCC
Q 042958 370 SNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSI 449 (1075)
Q Consensus 370 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 449 (1075)
+|.+.+ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|+|++. ..|..+++|+.|+|++|+|++..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 555533 22 445555555555555555432 2344555555555555555433 34444555555555555554433
Q ss_pred CCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCccc
Q 042958 450 PHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLS 494 (1075)
Q Consensus 450 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 494 (1075)
| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 3 44444555555555544432 23444444444444444444
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-19 Score=197.22 Aligned_cols=192 Identities=28% Similarity=0.372 Sum_probs=106.5
Q ss_pred cCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEE
Q 042958 96 ISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLH 175 (1075)
Q Consensus 96 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (1075)
+.++..+.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|.++++.+ +..+++|++|+
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 444555566666665432 244667777777777776632 2 35555555555555555555443 55555555555
Q ss_pred cCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCC
Q 042958 176 LYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 176 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
+++|++++. ..+. .+++|++|++++|++++. ..+..+++|++|++++|++++
T Consensus 97 l~~n~l~~~--~~l~------------------------~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 97 LDENKVKDL--SSLK------------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCSSCCCCG--GGGT------------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCcCCCC--hhhc------------------------cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence 555555432 1244 444555555555554432 234555555555555555553
Q ss_pred ccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccC
Q 042958 256 SIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSG 327 (1075)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 327 (1075)
. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 3 345555566666666666654333 56666666666666666643 2 36666677777777776664
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.6e-18 Score=180.18 Aligned_cols=131 Identities=27% Similarity=0.337 Sum_probs=62.3
Q ss_pred CCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 73 PHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 73 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
++|+.|+|++|.+++..+..++.+++|++|+|++|.+++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666665444445555666666666666665555555555555555555555555332233333444444444
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeecc
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYN 203 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 203 (1075)
++|.++++.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 444444333333333333333333333333333333333333333333333
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=197.60 Aligned_cols=156 Identities=27% Similarity=0.237 Sum_probs=76.7
Q ss_pred ccEEEccCCCccCCCCcccc-ccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecc
Q 042958 75 LAYLDLWHNQLYGNIPPQIG-NISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALY 153 (1075)
Q Consensus 75 L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 153 (1075)
+++|||++|+|++..+..+. .+++|++|+|++|.|++..|..|.++++|++|+|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~------------------- 101 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH------------------- 101 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-------------------
Confidence 45555555555544444444 4555555555555554444444445555555555554444
Q ss_pred cccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCC---cCCCCcCceeccccCCC
Q 042958 154 SNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSL---GNLTNLATLYLHNNSLF 230 (1075)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~ 230 (1075)
.+.+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..| ..+++|+.|+|++|+++
T Consensus 102 -----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 102 -----TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred -----cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 3333444555555555555555554444555555555555555555553222222 34555555555555555
Q ss_pred CCCcccccCCCC--CCeEeccCCCCC
Q 042958 231 DSIPSELGNLRS--LSMLSLGYNKLS 254 (1075)
Q Consensus 231 ~~~~~~~~~l~~--L~~L~Ls~N~l~ 254 (1075)
+..+..+..++. ++.|+|++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 444444444444 255555555554
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=179.47 Aligned_cols=133 Identities=27% Similarity=0.260 Sum_probs=67.6
Q ss_pred CccEEEccCCCccCCCC-ccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeec
Q 042958 74 HLAYLDLWHNQLYGNIP-PQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLAL 152 (1075)
Q Consensus 74 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 152 (1075)
.+++|+|++|++++..| ..++.+++|++|+|++|.|++..|..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34566666666654433 23555666666666666665554555555555666666555555444444444444444444
Q ss_pred ccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccc
Q 042958 153 YSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFS 206 (1075)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 206 (1075)
++|.++++.|..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 444444444444444444444444444444444444444444444444444443
No 364
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.8e-18 Score=179.83 Aligned_cols=132 Identities=24% Similarity=0.317 Sum_probs=70.1
Q ss_pred ccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccccccccccc
Q 042958 386 SLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLY 465 (1075)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 465 (1075)
+|+.|++++|+|++..+..|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555554444455555555555555555555445555555555555555555554444444555555555555
Q ss_pred CCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCC
Q 042958 466 DNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSL 517 (1075)
Q Consensus 466 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 517 (1075)
+|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555555555555555555555555555554444555555555555555554
No 365
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=196.68 Aligned_cols=175 Identities=25% Similarity=0.261 Sum_probs=105.4
Q ss_pred ceeeccccccCCCCccccCCCcccceeeeccccccccCChhhc-cCCCCCeEEeeccccccccccccccccccceecccc
Q 042958 364 ATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLG-NLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGY 442 (1075)
Q Consensus 364 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 442 (1075)
+.+++++|.+. .+|..+. ..++.|+|++|+|++..+..|. .+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34555555552 2343332 2355666666666655555555 666666666666666666556666666666666666
Q ss_pred cccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccc---cCCCccceeeccCCCCCC
Q 042958 443 NKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSL---GNLSNLVILYLYNNSLFD 519 (1075)
Q Consensus 443 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~ 519 (1075)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555566666667777777777666666667777777777777777765444444 457777777777777765
Q ss_pred CCCccccCcccc--cccccccccc
Q 042958 520 SIPSELGNLRSL--SMLSFAYNKL 541 (1075)
Q Consensus 520 ~~~~~l~~l~~L--~~L~l~~N~l 541 (1075)
..+..+..++.+ +.|++++|.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 554555555542 4444444443
No 366
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=178.11 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=90.8
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCC-CCCCCCCCCcEEEccCcccCCCCCccccccCCcceeeccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIP-PEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYS 154 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (1075)
+.+|+++|.++ .+|..+. ..+++|+|++|.|++..| ..|.++++|++|+|++|+|++..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------------- 76 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-------------- 76 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT--------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH--------------
Confidence 47788888876 4676554 345677777777775544 33566666777777666666544444
Q ss_pred ccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCc
Q 042958 155 NYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIP 234 (1075)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (1075)
|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|
T Consensus 77 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 77 ----------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ----------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ----------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 4555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccCCCCCCeEeccCCCCCC
Q 042958 235 SELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
..|..+++|++|+|++|.+.+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEEC
T ss_pred HHhcCCCCCCEEEecCcCCcC
Confidence 555555566666666665553
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=9.1e-20 Score=218.07 Aligned_cols=128 Identities=22% Similarity=0.220 Sum_probs=112.5
Q ss_pred HhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeec
Q 042958 572 FLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLS 651 (1075)
Q Consensus 572 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 651 (1075)
.|..+.+++|.++...+ ..|+.|+|++|+|++ +|. |+.+++|++|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence 45555666666664322 258999999999996 676 999999999999999998 789999999999999999
Q ss_pred cccccCchhhhhccccccceeecCCCccccCC-hhhhcccccccEEeecCCccCCCCCCC
Q 042958 652 HNFLREAIPSQICIMQSLENLNLSHNSLVGLI-PSCFEKMHGLLRIDISYNELQGPIPNS 710 (1075)
Q Consensus 652 ~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~-p~~~~~~~~l~~l~~s~N~~~~~~p~~ 710 (1075)
+|+|++ +| .+..+++|+.|+|++|.|++.+ |..|..+++|+.|++++|++++.+|..
T Consensus 495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 999998 67 8999999999999999999998 999999999999999999999877643
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.6e-17 Score=175.31 Aligned_cols=152 Identities=26% Similarity=0.243 Sum_probs=90.7
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.++.+++.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|+...+..
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--------------- 83 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--------------- 83 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---------------
Confidence 56777777776 6665544 67777777777777666666777777777777777665433333
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcc
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPS 235 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (1075)
|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+.
T Consensus 84 ---------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 84 ---------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp ---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred ---------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 445555555555555555544445555555555555555555 4455555555555555555555544444
Q ss_pred cccCCCCCCeEeccCCCCCC
Q 042958 236 ELGNLRSLSMLSLGYNKLSG 255 (1075)
Q Consensus 236 ~~~~l~~L~~L~Ls~N~l~~ 255 (1075)
.|..+++|+.|+|++|.+.+
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCT
T ss_pred HHhCCCCCCEEEeeCCCccC
Confidence 55555666666666665553
No 369
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=9.5e-19 Score=196.09 Aligned_cols=261 Identities=14% Similarity=0.123 Sum_probs=135.0
Q ss_pred CCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcc--------cccccccccccccCcCCCCcccCC
Q 042958 216 LTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGN--------LTNLATLYLYENSLSGSIPSEFGN 287 (1075)
Q Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~ 287 (1075)
+++|+.|+|++|++.. ....-+.++.+..+.+..|.+ .+.+|.+ +++|+.|+|.+ .++.+.+.+|.+
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEE-ecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 4556666666666541 000111122234444444422 2345555 77777777776 666555667777
Q ss_pred CccCcEEEccCCCCCCCcCCCCCccccccceecccccc----cCCCCcccccccccc-cccccCCcccccCCCcCCCCCC
Q 042958 288 LRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSL----SGSIPSEIGNLRSLS-NLGLSGNKLSGSIPPSLGYLSN 362 (1075)
Q Consensus 288 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~l~~l~~ 362 (1075)
+++|+.|++++|.+..+.+.+|.++.++..+.+..+.. .......|.++..|+ .+.+....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~-------------- 188 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG-------------- 188 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--------------
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--------------
Confidence 77777777777777666667777766666665554221 222233344444443 22222111
Q ss_pred cceeeccccccCCCCccc----cCCCcccceeeeccccccccCChhh-ccCCCCCeEEeeccccccccccccccccccce
Q 042958 363 LATLYLYSNSLFDSIPSE----LGNLRSLSMLSLGYNKLSGSIPHSL-GNLTNLATLDLYDNSLSGSIPSEFGNLRSLST 437 (1075)
Q Consensus 363 L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 437 (1075)
.++.. -....++..+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+.+|.++++|+.
T Consensus 189 -------------~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 189 -------------KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp -------------CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred -------------cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 11111 012233444444433211 111111 12556666666666666555556666666666
Q ss_pred ecccccccccCCCCCCccccccc-cccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCCccceee
Q 042958 438 LSLGYNKLSGSIPHSLGNLTNLD-ALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILY 511 (1075)
Q Consensus 438 L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 511 (1075)
|+|.+| ++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.++...+..|.++++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666665 5545555566666666 666655 55545556666666666666666666655555666666666655
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.4e-18 Score=185.68 Aligned_cols=169 Identities=24% Similarity=0.354 Sum_probs=79.6
Q ss_pred ccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeee
Q 042958 313 TNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSL 392 (1075)
Q Consensus 313 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 392 (1075)
.++..+++++|.+++. + .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444444444444421 1 33444444444444444442 22 34444444455555444433222 444555555555
Q ss_pred ccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccC
Q 042958 393 GYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGS 472 (1075)
Q Consensus 393 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 472 (1075)
++|++++. |. +.. ++|++|+|++|++++. ..+..+++|+.|++++|+|++. + .+..+++|+.|+|++|++++.
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 55555432 21 111 4555555555555532 2355555555555555555532 2 355555555555555555543
Q ss_pred CCccccCcCCCCEEeCCCCcccCC
Q 042958 473 IPGEIGNLRSISNLALNNNKLSGS 496 (1075)
Q Consensus 473 ~p~~~~~l~~L~~L~L~~N~l~~~ 496 (1075)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4455555555555555555543
No 371
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.4e-19 Score=197.00 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCCccEEEccCCCccCCCCccccc-cCCCceeecccCccc--ccCCCCCCCCCCCcEEEccCcccCCCCCccccc-----
Q 042958 72 FPHLAYLDLWHNQLYGNIPPQIGN-ISRLKYLDLSSNLFF--GTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGR----- 143 (1075)
Q Consensus 72 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~----- 143 (1075)
+.+++.|.++++ +.+.--..+.. +++|++|||++|.+. ...+.. ++.++.+.+..|.|. +..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhccccccc
Confidence 455667776653 11110112222 556777777777665 222222 222444555544332 233444
Q ss_pred ---cCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeec
Q 042958 144 ---LSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGY 202 (1075)
Q Consensus 144 ---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 202 (1075)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..+.+..
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666666 56655556666666666666666666555555565555555554443
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.8e-18 Score=185.18 Aligned_cols=170 Identities=24% Similarity=0.268 Sum_probs=87.3
Q ss_pred ccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEE
Q 042958 95 NISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTL 174 (1075)
Q Consensus 95 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (1075)
.+.+++.++++.|.+++. + .+..+++|++|++++|+++. +| .+..+++|++|++++|.++++.+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344455555555555422 2 34555555555555555542 33 34444555555555555544433 5555555555
Q ss_pred EcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCC
Q 042958 175 HLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLS 254 (1075)
Q Consensus 175 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (1075)
+|++|++++..+ +.. ++|++|+|++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 555555554322 122 5555555555555532 2355555555555555555543 2 4555556666666666655
Q ss_pred CccCCCCcccccccccccccccCcC
Q 042958 255 GSIPHSLGNLTNLATLYLYENSLSG 279 (1075)
Q Consensus 255 ~~~~~~~~~l~~L~~L~L~~n~l~~ 279 (1075)
+. ..+..+++|+.|++++|.+++
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 43 445555555555555555553
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.7e-18 Score=213.72 Aligned_cols=232 Identities=22% Similarity=0.211 Sum_probs=123.3
Q ss_pred cccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEe
Q 042958 337 RSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDL 416 (1075)
Q Consensus 337 ~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 416 (1075)
+.++.|+|.+|.+.. .+. ..|+.++|+.|.+ ..++++.|.+. ..+..+..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i--------------~~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSI--------------DEDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccc--------------cCcccccccee-cChhhhccCCCCcEEEC
Confidence 345666666666653 222 2234445555544 23355566665 67788888999999999
Q ss_pred eccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCC
Q 042958 417 YDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGS 496 (1075)
Q Consensus 417 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 496 (1075)
++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 999998 55666668999999999999998 78888999999999999999999 77999999999999999999997 6
Q ss_pred CcccccCCCccceeeccCCCCCCCCCccccCccc-cccccccccccccccCCcccccccCCCccccccchhhhhhhHhHH
Q 042958 497 IPQSLGNLSNLVILYLYNNSLFDSIPSELGNLRS-LSMLSFAYNKLSGSIPHSLGVLDLSSNHIVGEIPTELGKLNFLIK 575 (1075)
Q Consensus 497 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~l~~N~l~~~~p~~l~~L~Ls~N~l~~~~p~~~~~~~~l~~ 575 (1075)
+|..|+++++|+.|+|++|.|++.+|..+..+.. +..+++++|.+++.+|..+..|+++.|... -..++
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~---~~~~~------- 377 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEP---QREYD------- 377 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeeccccc---ccccC-------
Confidence 7888999999999999999999888888866533 245789999999999999999999888211 11111
Q ss_pred HhhcccccccccccccCcccccceeecCCCcccC
Q 042958 576 LILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSN 609 (1075)
Q Consensus 576 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 609 (1075)
.|.+..+..+..+..++...+++|.+.+
T Consensus 378 ------~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 378 ------SLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ------------------------------CCCG
T ss_pred ------Cccccccchhhcccccceeeeecccccc
Confidence 2233333445566677778888888764
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-17 Score=170.47 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=71.5
Q ss_pred cccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCE
Q 042958 94 GNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDT 173 (1075)
Q Consensus 94 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (1075)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555555555555555 344 4555555555555555443 1224444444444444444444444444455555555
Q ss_pred EEcCCCCCCCCCCccccCccccceEeeeccc-cccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCC
Q 042958 174 LHLYDNSLSDSIPSEFGNLRSLSMLSLGYNK-FSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNK 252 (1075)
Q Consensus 174 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 252 (1075)
|++++|++++..+..|+.+++|++|++++|+ ++ .+| .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 5555555544444444444555555555544 32 222 344444444444444444331 1 34444444444444444
Q ss_pred C
Q 042958 253 L 253 (1075)
Q Consensus 253 l 253 (1075)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-17 Score=170.57 Aligned_cols=155 Identities=18% Similarity=0.277 Sum_probs=132.5
Q ss_pred cCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcc
Q 042958 69 FSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLN 148 (1075)
Q Consensus 69 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 148 (1075)
.+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456788999999999998 667 6999999999999999765 345789999999999999999987888899999999
Q ss_pred eeecccccccCCCCCCCCCCCCCCEEEcCCCC-CCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceecccc
Q 042958 149 YLALYSNYLEDLIPPSLGNLSNLDTLHLYDNS-LSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNN 227 (1075)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 227 (1075)
+|++++|.+++..+..++.+++|++|++++|. ++. ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999999998888889999999999999998 665 44 58999999999999999985 44 7889999999999999
Q ss_pred CCCC
Q 042958 228 SLFD 231 (1075)
Q Consensus 228 ~l~~ 231 (1075)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9854
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.5e-17 Score=168.63 Aligned_cols=131 Identities=25% Similarity=0.347 Sum_probs=64.5
Q ss_pred cccccCCCccccccchhhhhhhHhHHHhhccccccccccc-ccCcccccceeecCCCcccCcccccccccccceEEEccc
Q 042958 550 GVLDLSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSP-KLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSN 628 (1075)
Q Consensus 550 ~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 628 (1075)
+.+++++|+++ .+|..+.. .++.|++++|++++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46677777775 34443322 444455555555443332 244455555555555555444444455555555555555
Q ss_pred cccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCCccccCC
Q 042958 629 NQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHNSLVGLI 683 (1075)
Q Consensus 629 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 683 (1075)
|+|++..|..|..+++|++|+|++|+|++.+|..+..+++|+.|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5554444444444455555555555554444444444444444555554444443
No 377
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.1e-15 Score=175.83 Aligned_cols=314 Identities=12% Similarity=0.044 Sum_probs=126.4
Q ss_pred cCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccc
Q 042958 158 EDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSEL 237 (1075)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (1075)
+.+...+|.++++|+.+.+.. .++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 334445555666666666643 244444555666666666666533 43344455555555555554432 222223334
Q ss_pred cCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccc
Q 042958 238 GNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLAT 317 (1075)
Q Consensus 238 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 317 (1075)
..+..+....... +......+|.++++|+.+.+..+. ..+...+|.++.+|+.+++..| ++.+...+|.++..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 3333222211111 111122334444444444443322 1123334444444444444433 22233344444444444
Q ss_pred eecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccc
Q 042958 318 LYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKL 397 (1075)
Q Consensus 318 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 397 (1075)
+.+.++... +.+.+....+|+.+.+..+ ++......|..+..|+.+.+..+.. ......|.++..++.+....+.+
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 444333222 1111222233444433322 1112233344444444444443322 22333344444444444433322
Q ss_pred cccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccc
Q 042958 398 SGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEI 477 (1075)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 477 (1075)
....|..+.+|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.....+|.++++|+.+.+..| ++.+...+|
T Consensus 289 ---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 ---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp ---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 1223444444444444332 33333344444444444444322 33233344444444444444333 333333344
Q ss_pred cCcCCCCEEeC
Q 042958 478 GNLRSISNLAL 488 (1075)
Q Consensus 478 ~~l~~L~~L~L 488 (1075)
.++.+|+.+++
T Consensus 363 ~~C~~L~~i~l 373 (394)
T 4fs7_A 363 QGCINLKKVEL 373 (394)
T ss_dssp TTCTTCCEEEE
T ss_pred hCCCCCCEEEE
Confidence 44444444444
No 378
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1.2e-15 Score=174.22 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=131.5
Q ss_pred CCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceec
Q 042958 145 SSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYL 224 (1075)
Q Consensus 145 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 224 (1075)
..++.+.+.+ .++.+...+|.+. +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++...+.+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3344444332 2334444445443 4555555444 444444445442 355555543 344344445555555555555
Q ss_pred cccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCC
Q 042958 225 HNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGI 304 (1075)
Q Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 304 (1075)
.+|+++......|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 55554433333333 344555555422 33333444444444554444432 33233344444 34444444 2333333
Q ss_pred cCCCCCccccccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCC
Q 042958 305 IPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNL 384 (1075)
Q Consensus 305 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 384 (1075)
...+|.++++|+.+++.+|.+.. +.+..+.+.+|..+++|+.+.+.+ .+......+|.++
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c 322 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN 322 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred ChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC
Confidence 34444444444444444443320 000124445566666666666653 3544445566666
Q ss_pred cccceeeeccccccccCChhhccCCCCCeEEeecccccccccccccccc-ccceecccccccc
Q 042958 385 RSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLR-SLSTLSLGYNKLS 446 (1075)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 446 (1075)
.+|+.++|..| ++.+...+|.++ +|+.+++++|.+..+.+..|.+++ +++.|++..+.+.
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 66666666443 544555666666 677777766666655556666663 5666666666543
No 379
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=2e-16 Score=161.98 Aligned_cols=110 Identities=27% Similarity=0.352 Sum_probs=52.4
Q ss_pred CCCeEEeecccccccccc-ccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeC
Q 042958 410 NLATLDLYDNSLSGSIPS-EFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLAL 488 (1075)
Q Consensus 410 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 488 (1075)
+|++|++++|+|+++.+. .|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444433332 2444444444444444444444444444444444444444444444444444555555555
Q ss_pred CCCcccCCCcccccCCCccceeeccCCCCCC
Q 042958 489 NNNKLSGSIPQSLGNLSNLVILYLYNNSLFD 519 (1075)
Q Consensus 489 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 519 (1075)
++|+|++..|..|..+++|+.|+|++|++.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555544444455555555555555555543
No 380
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=8.7e-16 Score=175.52 Aligned_cols=265 Identities=14% Similarity=0.122 Sum_probs=168.3
Q ss_pred CCCCEEEcCCCCCCCCCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEec
Q 042958 169 SNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSL 248 (1075)
Q Consensus 169 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (1075)
..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+++.+.. .++.+.+.+|..+++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4555555543 3444445556554 5666666544 444444555553 455555553 344334445555555555555
Q ss_pred cCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCC
Q 042958 249 GYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGS 328 (1075)
Q Consensus 249 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 328 (1075)
+.|+++ .+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+++.+| ++.+
T Consensus 188 ~~n~l~------------------------~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 188 SKTKIT------------------------KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp TTSCCS------------------------EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred CCCcce------------------------EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence 555554 33333333 244455555422 44344445555555555555443 3334
Q ss_pred CCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccC-----CCCccccCCCcccceeeeccccccccCCh
Q 042958 329 IPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLF-----DSIPSELGNLRSLSMLSLGYNKLSGSIPH 403 (1075)
Q Consensus 329 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 403 (1075)
...+|.+ .+|+.+.+ .+.++.+...+|..+++|+.+.+.+|.+. ...+..|.++++|+.++|. +.+..+...
T Consensus 241 ~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp CTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred ccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 4445554 45555555 23344455566666777777777666553 3566789999999999999 558778888
Q ss_pred hhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccc-ccccccccCCccc
Q 042958 404 SLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLT-NLDALYLYDNSLS 470 (1075)
Q Consensus 404 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~ 470 (1075)
.|.++++|+.++|..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ ++..|++..+.+.
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9999999999999665 777888999999 999999999999877788898884 7889999888765
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.2e-16 Score=156.85 Aligned_cols=134 Identities=24% Similarity=0.267 Sum_probs=104.3
Q ss_pred CCCCccEEEccCCCcc-CCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcce
Q 042958 71 SFPHLAYLDLWHNQLY-GNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNY 149 (1075)
Q Consensus 71 ~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 149 (1075)
..++|++|+|++|.++ +.+|..++.+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477999999999997 78888889999999999999998865 78889999999999999998777777777778888
Q ss_pred eecccccccCCCC-CCCCCCCCCCEEEcCCCCCCCCCC---ccccCccccceEeeeccccc
Q 042958 150 LALYSNYLEDLIP-PSLGNLSNLDTLHLYDNSLSDSIP---SEFGNLRSLSMLSLGYNKFS 206 (1075)
Q Consensus 150 L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 206 (1075)
|++++|.++++.. ..+..+++|++|++++|.+++..+ ..|..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8777777777543 566777777777777777765544 35666677777777776665
No 382
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.6e-15 Score=174.25 Aligned_cols=317 Identities=12% Similarity=0.022 Sum_probs=147.9
Q ss_pred ccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCcc
Q 042958 109 FFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSE 188 (1075)
Q Consensus 109 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 188 (1075)
++..-..+|.++++|+.+.|..+ ++.....+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44444566777777777777643 44333345555555555555433 44444445555555555444332 22233334
Q ss_pred ccCccccceEeeeccccccccCCCCcCCCCcCceeccccCCCCCCcccccCCCCCCeEeccCCCCCCccCCCCccccccc
Q 042958 189 FGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLA 268 (1075)
Q Consensus 189 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 268 (1075)
|.++..++..... .+......+|.++++|+.+.+.+ +... ....+|.++.+|+
T Consensus 136 F~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~------------------------~~~~-I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 136 FKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPD------------------------SMET-LHNGLFSGCGKLK 188 (394)
T ss_dssp TTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCT------------------------TCCE-ECTTTTTTCTTCC
T ss_pred eecccccccccCc--cccccchhhhcccCCCcEEecCC------------------------ccce-eccccccCCCCce
Confidence 4444322222111 11112233444444555544443 3221 3333444444444
Q ss_pred ccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCcccccccccccccccCCc
Q 042958 269 TLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNK 348 (1075)
Q Consensus 269 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 348 (1075)
.+.+..+ ++.+...+|.++..|+.+.+..+... +...+....+|+.+.+..+ ++.+....|.++..|+.+.+..+.
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc
Confidence 4444433 33233344444444444444433222 1122222344444444332 222333444455555555554443
Q ss_pred ccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccc
Q 042958 349 LSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSE 428 (1075)
Q Consensus 349 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 428 (1075)
.. .....|..+..++.+....+.+ ....|..+.+|+.+.+..+ +..+...+|.++++|+.+++.++ ++.+...+
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 32 3444455555555555444332 1234455555555555433 44344455556666666666433 44455556
Q ss_pred cccccccceecccccccccCCCCCCccccccccccccC
Q 042958 429 FGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYD 466 (1075)
Q Consensus 429 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 466 (1075)
|.++.+|+.+++..| ++.....+|.++++|+.+++..
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 666666666666554 4434455566666666666543
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.3e-15 Score=152.42 Aligned_cols=132 Identities=23% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCCcEEEccCcccC-CCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEe
Q 042958 121 SYLKTLQLFENQLN-GSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLS 199 (1075)
Q Consensus 121 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 199 (1075)
++|++|++++|+++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44444444444555555555544444 4456666666666666666665555555566666666
Q ss_pred eecccccccc-CCCCcCCCCcCceeccccCCCCCCc---ccccCCCCCCeEeccCCCCC
Q 042958 200 LGYNKFSGSI-PHSLGNLTNLATLYLHNNSLFDSIP---SELGNLRSLSMLSLGYNKLS 254 (1075)
Q Consensus 200 Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 254 (1075)
|++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665421 1455556666666666666654333 34555666666666666555
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=156.00 Aligned_cols=128 Identities=25% Similarity=0.286 Sum_probs=107.2
Q ss_pred hhcccccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeecccccc
Q 042958 577 ILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLR 656 (1075)
Q Consensus 577 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 656 (1075)
++++|+++ .+|..+ .++|++|+|++|+|+ .+|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+
T Consensus 16 ~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 16 RCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp ECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 34444444 333333 257899999999997 78888999999999999999999888888999999999999999999
Q ss_pred CchhhhhccccccceeecCCCccccCChhhhcccccccEEeecCCccCCCCC
Q 042958 657 EAIPSQICIMQSLENLNLSHNSLVGLIPSCFEKMHGLLRIDISYNELQGPIP 708 (1075)
Q Consensus 657 ~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~N~~~~~~p 708 (1075)
+..|..+..+++|+.|+|++|.|++..+..|..++.|+.|++++|++++.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8888889999999999999999998888889999999999999999987664
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=6.2e-16 Score=151.26 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=90.2
Q ss_pred CCCccEEEccCCCcc-CCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCccee
Q 042958 72 FPHLAYLDLWHNQLY-GNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYL 150 (1075)
Q Consensus 72 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 150 (1075)
.++|++|++++|.++ +.+|..++.+++|++|++++|.+++. ..++++++|++|+|++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 78888888888888888888888755 678888888888888888887677666666666666
Q ss_pred ecccccccCCC-CCCCCCCCCCCEEEcCCCCCCCCCC---ccccCccccceEeee
Q 042958 151 ALYSNYLEDLI-PPSLGNLSNLDTLHLYDNSLSDSIP---SEFGNLRSLSMLSLG 201 (1075)
Q Consensus 151 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls 201 (1075)
++++|.++++. +..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666542 3455556666666666666554443 345555555555544
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1e-15 Score=149.80 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=103.1
Q ss_pred HhHHHhhcccccc-cccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeee
Q 042958 572 FLIKLILAQNQLS-GQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDL 650 (1075)
Q Consensus 572 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 650 (1075)
.++.|++++|+++ +.+|..+..+++|++|+|++|.|++. ..++.+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3445555555555 45666677888899999999999865 77888899999999999998878888888999999999
Q ss_pred ccccccCc-hhhhhccccccceeecCCCccccCCh---hhhcccccccEEeecC
Q 042958 651 SHNFLREA-IPSQICIMQSLENLNLSHNSLVGLIP---SCFEKMHGLLRIDISY 700 (1075)
Q Consensus 651 s~N~l~~~-~~~~~~~~~~L~~L~ls~N~l~~~~p---~~~~~~~~l~~l~~s~ 700 (1075)
++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999874 45788889999999999999988877 6788899999998863
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=7e-15 Score=148.40 Aligned_cols=132 Identities=25% Similarity=0.274 Sum_probs=88.8
Q ss_pred CccceEEeCCCCceeEEEecccccccccCCcccCCCCCccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCC
Q 042958 37 CAWVGIHCNRGGRVNSINLTSIGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPE 116 (1075)
Q Consensus 37 c~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 116 (1075)
|.|++|.|+.. ++.. ++. .-.++|++|++++|++++..+..++.+++|++|+|++|.+++..+..
T Consensus 7 C~~~~l~~~~~-----------~l~~-~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCNSK-----------GLTS-VPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECCSS-----------CCSS-CCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEecCC-----------CCcc-CCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 89999999753 2221 221 12367888888888888666666788888888888888887655666
Q ss_pred CCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCC
Q 042958 117 IGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSD 183 (1075)
Q Consensus 117 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 183 (1075)
++.+++|++|+|++|++++..+..+..+++|++|++++|.++++.+..+..+++|++|++++|.+++
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7788888888888888876555555666666666666666665555555555666666666665553
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=150.87 Aligned_cols=62 Identities=27% Similarity=0.273 Sum_probs=30.1
Q ss_pred CccEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCC
Q 042958 74 HLAYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGS 136 (1075)
Q Consensus 74 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 136 (1075)
+|++|+|++|.++ .+|..++.+++|++|+|++|.|++..+..|.++++|++|+|++|+|++.
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 4555555555554 4444455555555555555555444444444444444444444444433
No 389
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.58 E-value=1.3e-15 Score=163.78 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=98.0
Q ss_pred hcCCCCCceecccCceEEEEEEE-CCCCE--EEEEEccCCCCC---------------------chhHHHHHHHHHHHHh
Q 042958 814 TNDFDDEHCIGKGGQGSVYKAEL-ASGEI--VAVKKFHSPLPG---------------------EMTFQQEFLNEVKALT 869 (1075)
Q Consensus 814 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~--vavK~~~~~~~~---------------------~~~~~~~~~~E~~~l~ 869 (1075)
..-|++.+.||+|+||.||+|.. .+|+. ||||+++..... .......+.+|+.+++
T Consensus 46 ~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 125 (258)
T 1zth_A 46 GYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE 125 (258)
T ss_dssp TSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence 33466788999999999999977 67999 999987543211 0112246889999999
Q ss_pred cCCcCce--eeEEEEeeccccchhheecCccc--cCC-------CCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEecCCC
Q 042958 870 EIRHRNI--VKFYGFCSHVRHSLAMILSNNAA--AKD-------LGWTRRMNVIKGISDALSYMH-NDCFPPIVHRDISS 937 (1075)
Q Consensus 870 ~l~h~ni--v~l~~~~~~~~~~l~~~~~~~~~--~~~-------l~~~~~~~i~~~i~~~L~~LH-~~~~~~ivH~Dlk~ 937 (1075)
+++|+++ +.++++ ....+.+.+....+ ... .++.....++.|++.|+.||| +. +|+||||||
T Consensus 126 ~l~~~~i~~p~~~~~---~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---givHrDlkp 199 (258)
T 1zth_A 126 RAKEAGVSVPQPYTY---MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEA---ELVHADLSE 199 (258)
T ss_dssp HHHHTTCCCCCEEEE---ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTS---CEECSSCST
T ss_pred HHHhCCCCCCeEEEc---CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCH
Confidence 9988753 444432 12222222221000 001 123356789999999999999 88 999999999
Q ss_pred CCeeeCCCCCceEeccccccccC
Q 042958 938 KNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 938 ~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
+||+++. .++|+|||+|....
T Consensus 200 ~NILl~~--~~~liDFG~a~~~~ 220 (258)
T 1zth_A 200 YNIMYID--KVYFIDMGQAVTLR 220 (258)
T ss_dssp TSEEESS--SEEECCCTTCEETT
T ss_pred HHEEEcC--cEEEEECcccccCC
Confidence 9999998 99999999998653
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=145.16 Aligned_cols=128 Identities=26% Similarity=0.256 Sum_probs=78.0
Q ss_pred cEEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccc
Q 042958 76 AYLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSN 155 (1075)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (1075)
+.+++++++++ .+|..+. ++|++|++++|.+++..+..++++++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 56777777776 4554443 57777777777777555556677777777777777777544444555555555555555
Q ss_pred cccCCCCCCCCCCCCCCEEEcCCCCCCCCCCccccCccccceEeeeccccc
Q 042958 156 YLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNKFS 206 (1075)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 206 (1075)
.++++.+..|..+++|++|++++|++++..+..|..+++|++|+|++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555555555555555555555555555444444455555555555555544
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=4.7e-16 Score=160.16 Aligned_cols=135 Identities=23% Similarity=0.289 Sum_probs=108.9
Q ss_pred cchhhhhhhHhHHHhhcccccccccccccCcccccceeecCCCcccCcccccccccccceEEEccccccccccchhcccc
Q 042958 563 IPTELGKLNFLIKLILAQNQLSGQLSPKLGSLAQLEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEEL 642 (1075)
Q Consensus 563 ~p~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 642 (1075)
+|..+..++.|+.|++++|++++ +| .+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++ +| .+..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 34488888888888888888886 45 7888889999999999988 678888888889999999998876 45 68888
Q ss_pred cccceeeeccccccCchh-hhhccccccceeecCCCccccCChhh----------hcccccccEEeecCCccC
Q 042958 643 IHLSELDLSHNFLREAIP-SQICIMQSLENLNLSHNSLVGLIPSC----------FEKMHGLLRIDISYNELQ 704 (1075)
Q Consensus 643 ~~L~~L~ls~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~p~~----------~~~~~~l~~l~~s~N~~~ 704 (1075)
++|+.|+|++|++++..+ ..+..+++|+.|++++|++.+.+|.. +..++.|+.|| +|.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 889999999999887443 57788888999999999988776653 78888888887 55554
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=9.4e-16 Score=157.89 Aligned_cols=132 Identities=25% Similarity=0.355 Sum_probs=61.5
Q ss_pred ccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCcccccc
Q 042958 380 ELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNL 459 (1075)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 459 (1075)
.+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444443 33 4444444444444444444 233344444445555555554443 22 34444455
Q ss_pred ccccccCCccccCCC-ccccCcCCCCEEeCCCCcccCCCcc----------cccCCCccceeeccCCCCC
Q 042958 460 DALYLYDNSLSGSIP-GEIGNLRSISNLALNNNKLSGSIPQ----------SLGNLSNLVILYLYNNSLF 518 (1075)
Q Consensus 460 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~ 518 (1075)
++|++++|++++..+ ..+..+++|++|++++|++++..|. .+..+++|+.|| +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 555555555442211 2445555555555555555443333 255566666655 44443
No 393
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=9.8e-13 Score=151.02 Aligned_cols=334 Identities=11% Similarity=0.113 Sum_probs=180.1
Q ss_pred CCCCCCCCCCC-CCCEEEcCCCCCCCCCCccccCccccceEeeeccc---cccccCCCCcCCCCcCceeccccCCCCCCc
Q 042958 159 DLIPPSLGNLS-NLDTLHLYDNSLSDSIPSEFGNLRSLSMLSLGYNK---FSGSIPHSLGNLTNLATLYLHNNSLFDSIP 234 (1075)
Q Consensus 159 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (1075)
.+...+|.+.. .|+.+.+-.+ ++.+...+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 33445566653 4677766543 555566667777777777776653 55455567777777777766554 444445
Q ss_pred ccccCCCCCCeEeccCCCCCCccCCCCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCcccc
Q 042958 235 SELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTN 314 (1075)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 314 (1075)
.+|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-.. +...+|.++.+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc
Confidence 56777777777777543 33244556777777777777544 44344455544 46777777654332 55566777777
Q ss_pred ccceecccccccCCCCcccccccccccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeecc
Q 042958 315 LATLYIHNNSLSGSIPSEIGNLRSLSNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGY 394 (1075)
Q Consensus 315 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 394 (1075)
++......+.... ....+..........+ ..+.....+..+.+.+ .+......+|.++..|+.+.+..
T Consensus 207 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 207 LSTITSDSESYPA-IDNVLYEKSANGDYAL----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CCEEEECCSSSCB-SSSCEEEECTTSCEEE----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred cceeccccccccc-ccceeecccccccccc----------cccccccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence 7766655544432 1111111000000000 0011111222222221 12223334566666666666654
Q ss_pred ccccccCChhhccCCCCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCC
Q 042958 395 NKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIP 474 (1075)
Q Consensus 395 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 474 (1075)
+.. .+....|.++++|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+..+ ++.+-.
T Consensus 275 ~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 433 2455566666667776664 3455455566777777777777654 44445566777777777777543 554555
Q ss_pred ccccCcCCCCEEeCCCCcccCCCcccccCCCccceeeccCCCC
Q 042958 475 GEIGNLRSISNLALNNNKLSGSIPQSLGNLSNLVILYLYNNSL 517 (1075)
Q Consensus 475 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 517 (1075)
.+|.++++|+.+++.+|... -..+...++|+.+.+..|.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 66777777777777776543 13456667777777766544
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=3.4e-14 Score=143.10 Aligned_cols=132 Identities=21% Similarity=0.175 Sum_probs=82.5
Q ss_pred cCCCCCccEEEccCCCccCCCCccccccC-CCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCc
Q 042958 69 FSSFPHLAYLDLWHNQLYGNIPPQIGNIS-RLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSL 147 (1075)
Q Consensus 69 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 147 (1075)
+.++++|++|+|++|+++ .+|. +..+. +|++|+|++|.+++. ..++.+++|++|+|++|++++..|..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 556778888888888887 4554 55554 888888888888754 577888888888888888875433334566666
Q ss_pred ceeecccccccCCCC-CCCCCCCCCCEEEcCCCCCCCCCCc----cccCccccceEeeecccc
Q 042958 148 NYLALYSNYLEDLIP-PSLGNLSNLDTLHLYDNSLSDSIPS----EFGNLRSLSMLSLGYNKF 205 (1075)
Q Consensus 148 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l 205 (1075)
++|++++|.+..+.+ ..+..+++|++|++++|.++. +|. .+..+++|++|+++.|.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666644332 244555555555555555542 222 244455555555555444
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=2.7e-14 Score=143.86 Aligned_cols=58 Identities=29% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCeEEeeccccccccccccccccccceecccccccccCCCCCCccccccccccccCCcc
Q 042958 410 NLATLDLYDNSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSL 469 (1075)
Q Consensus 410 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 469 (1075)
+|++|++++|.|++. ..|..+++|++|++++|+|++..+..|..+++|++|+|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444444332 2333344444444444444322222223333444444444443
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.1e-13 Score=138.40 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=82.6
Q ss_pred cceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCC
Q 042958 597 LEHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSH 676 (1075)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~ 676 (1075)
.+.+|+++|.|+ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..+..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777776 4665553 6777777887777777777777777788888888887776666677777788888888
Q ss_pred CccccCChhhhcccccccEEeecCCccCCCCCC
Q 042958 677 NSLVGLIPSCFEKMHGLLRIDISYNELQGPIPN 709 (1075)
Q Consensus 677 N~l~~~~p~~~~~~~~l~~l~~s~N~~~~~~p~ 709 (1075)
|+|++..+..|..+++|+.|++++|++++.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 888777777777788888888888888776653
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=2.8e-13 Score=135.76 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=76.7
Q ss_pred ceeecCCCcccCcccccccccccceEEEccccccccccchhcccccccceeeeccccccCchhhhhccccccceeecCCC
Q 042958 598 EHLDLSSNRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLREAIPSQICIMQSLENLNLSHN 677 (1075)
Q Consensus 598 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ls~N 677 (1075)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5666554 66777777777777766777777777777777777777655555667777777777777
Q ss_pred ccccCChhhhcccccccEEeecCCccCCCCC
Q 042958 678 SLVGLIPSCFEKMHGLLRIDISYNELQGPIP 708 (1075)
Q Consensus 678 ~l~~~~p~~~~~~~~l~~l~~s~N~~~~~~p 708 (1075)
+|++..+..|..++.|+.|++++|++++.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7777666667777777777777777776554
No 398
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=5.6e-12 Score=144.70 Aligned_cols=332 Identities=12% Similarity=0.106 Sum_probs=169.0
Q ss_pred CCCccccCcc-ccceEeeeccccccccCCCCcCCCCcCceeccccC---CCCCCcccccCCCCCCeEeccCCCCCCccCC
Q 042958 184 SIPSEFGNLR-SLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHNNS---LFDSIPSELGNLRSLSMLSLGYNKLSGSIPH 259 (1075)
Q Consensus 184 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 259 (1075)
+...+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+-..+|..+.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3444565553 4666666543 444555566666666666665543 33333344555555555444332 2223334
Q ss_pred CCcccccccccccccccCcCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecccccccCCCCccccccccc
Q 042958 260 SLGNLTNLATLYLYENSLSGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIHNNSLSGSIPSEIGNLRSL 339 (1075)
Q Consensus 260 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 339 (1075)
+|..+.+|+.+.+..+ +..+...+|..+.+|+.+.+..+ +..+...+|.+ .+|+.+.+..+-.. ....+|.++.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccc
Confidence 4445555555554422 22233344444555555554433 22233334432 33444444333222 333344444444
Q ss_pred ccccccCCcccccCCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeecc
Q 042958 340 SNLGLSGNKLSGSIPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDN 419 (1075)
Q Consensus 340 ~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 419 (1075)
+......+.... ....+. ..+.........+.....+..+.+. +.+..+....|.++.+|+.+.+.++
T Consensus 208 ~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 208 STITSDSESYPA-IDNVLY----------EKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CEEEECCSSSCB-SSSCEE----------EECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT
T ss_pred ceeccccccccc-ccceee----------cccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc
Confidence 433333222210 100000 0000000000011122333444443 3344455667888888888888766
Q ss_pred ccccccccccccccccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcc
Q 042958 420 SLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQ 499 (1075)
Q Consensus 420 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 499 (1075)
..+ +...+|.++++|+.+.+. +.++.....+|.++++|+.+.+.++ ++.+...+|.++.+|+.+.+..+ ++.....
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 543 667788888888888886 4455556677888888888888654 66566778888888888888654 5545567
Q ss_pred cccCCCccceeeccCCCCCCCCCccccCccccccccccccc
Q 042958 500 SLGNLSNLVILYLYNNSLFDSIPSELGNLRSLSMLSFAYNK 540 (1075)
Q Consensus 500 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 540 (1075)
.|.++++|+.+++.+|... -..+....+|+.+.+..|.
T Consensus 352 aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp GGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 7888888888888876532 1344555566666555544
No 399
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.39 E-value=2.8e-13 Score=150.49 Aligned_cols=146 Identities=10% Similarity=0.117 Sum_probs=96.9
Q ss_pred HHHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCC------------c---hh----HHHHHHHHHHHHhc
Q 042958 810 IIRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPG------------E---MT----FQQEFLNEVKALTE 870 (1075)
Q Consensus 810 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~------------~---~~----~~~~~~~E~~~l~~ 870 (1075)
+.....-|++.+.||+|+||.||+|...+|+.||||+++..... . .. .+.....|...+.+
T Consensus 90 L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r 169 (397)
T 4gyi_A 90 HAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA 169 (397)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 33444458889999999999999998889999999987532110 0 00 01112456777777
Q ss_pred CCcCcee--eEEEEeeccccchhheecCccc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCC
Q 042958 871 IRHRNIV--KFYGFCSHVRHSLAMILSNNAA-AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNE 947 (1075)
Q Consensus 871 l~h~niv--~l~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~ 947 (1075)
+.+.++. ..+++ .++.+.|.+..... ...........++.|++.|+.|||+. +||||||||.|||+++++.
T Consensus 170 L~~~gv~vp~p~~~---~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 170 LYEEGFPVPEPIAQ---SRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKD 243 (397)
T ss_dssp HHHTTCSCCCEEEE---ETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEEC
T ss_pred HHhcCCCCCeeeec---cCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCC
Confidence 7554432 22222 12333333222111 11122334567889999999999999 9999999999999988773
Q ss_pred ----------ceEeccccccccCC
Q 042958 948 ----------AHVSDFGIAKFLKP 961 (1075)
Q Consensus 948 ----------~kl~DfGla~~~~~ 961 (1075)
+.|+||+-+.....
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~~~h 267 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVSMDH 267 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEETTS
T ss_pred cccccccccceEEEEeCCcccCCC
Confidence 89999998876543
No 400
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.8e-12 Score=129.48 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=56.3
Q ss_pred EEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeecccccc
Q 042958 78 LDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNYL 157 (1075)
Q Consensus 78 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 157 (1075)
+|+++|.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+
T Consensus 14 l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 444445454 3454442 5566666666666655566666666666666666666644444444444444444444444
Q ss_pred cCCCCCCCCCCCCCCEEEcCCCCCC
Q 042958 158 EDLIPPSLGNLSNLDTLHLYDNSLS 182 (1075)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~L~~n~l~ 182 (1075)
+++.+..|..+++|++|+|++|.++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4444444555555666666666554
No 401
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=2.8e-12 Score=128.39 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=61.9
Q ss_pred EEEccCCCccCCCCccccccCCCceeecccCcccccCCCCCCCCCCCcEEEccCcccCCCCCccccccCCcceeeccccc
Q 042958 77 YLDLWHNQLYGNIPPQIGNISRLKYLDLSSNLFFGTIPPEIGHLSYLKTLQLFENQLNGSIPYEIGRLSSLNYLALYSNY 156 (1075)
Q Consensus 77 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 156 (1075)
.+|+++|.++ .+|..+. ++|++|+|++|.|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4555566654 5565554 666777777777766666667777777777777777765433344555555555555555
Q ss_pred ccCCCCCCCCCCCCCCEEEcCCCCCC
Q 042958 157 LEDLIPPSLGNLSNLDTLHLYDNSLS 182 (1075)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~L~~n~l~ 182 (1075)
++++.+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55554445556666666666666555
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=5.3e-13 Score=150.93 Aligned_cols=160 Identities=22% Similarity=0.201 Sum_probs=108.5
Q ss_pred cCCcccccccCCCccccccchhhhhh-----hHhHHHhhccccccccccccc-CcccccceeecCCCcccCcccccc---
Q 042958 545 IPHSLGVLDLSSNHIVGEIPTELGKL-----NFLIKLILAQNQLSGQLSPKL-GSLAQLEHLDLSSNRLSNSIPKSF--- 615 (1075)
Q Consensus 545 ~p~~l~~L~Ls~N~l~~~~p~~~~~~-----~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~--- 615 (1075)
+++.++.|+|++|.++......+... ..|+.|+|++|.++......+ ..+++|+.|||++|.|+......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34556667777777665544444444 467777777777764433333 245678888888888875444444
Q ss_pred --cccccceEEEcccccccc----ccchhcccccccceeeeccccccCch----hhhhccccccceeecCCCccccC---
Q 042958 616 --GNLVKLHYLNLSNNQFSR----GIPIKLEELIHLSELDLSHNFLREAI----PSQICIMQSLENLNLSHNSLVGL--- 682 (1075)
Q Consensus 616 --~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~----~~~~~~~~~L~~L~ls~N~l~~~--- 682 (1075)
...++|++|+|++|.|+. .++..+..+++|++|||++|+|+... +..+...++|+.|+|++|.|+..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235778888888888864 23444567788888888888887633 55566677888888888888753
Q ss_pred -ChhhhcccccccEEeecCCccC
Q 042958 683 -IPSCFEKMHGLLRIDISYNELQ 704 (1075)
Q Consensus 683 -~p~~~~~~~~l~~l~~s~N~~~ 704 (1075)
++..+...+.|+.||+++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 3344556688888898888775
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=6.5e-13 Score=150.17 Aligned_cols=173 Identities=20% Similarity=0.165 Sum_probs=113.9
Q ss_pred cCCCCEEeCCCCcccCCCcccccCC-----CccceeeccCCCCCCCCCcccc-CccccccccccccccccccCCcccccc
Q 042958 480 LRSISNLALNNNKLSGSIPQSLGNL-----SNLVILYLYNNSLFDSIPSELG-NLRSLSMLSFAYNKLSGSIPHSLGVLD 553 (1075)
Q Consensus 480 l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~p~~l~~L~ 553 (1075)
++.|+.|+|++|.++......+... ++|+.|+|++|.+++.....+. .+++ ++.||
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~------------------L~~L~ 132 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR------------------ARKLG 132 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT------------------EEEEE
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh------------------ccHhh
Confidence 3568888888888875433333332 6777888888776543222221 2222 34455
Q ss_pred cCCCccccccchhhhhhhHhHHHhhccccccccccccc-CcccccceeecCCCcccC----cccccccccccceEEEccc
Q 042958 554 LSSNHIVGEIPTELGKLNFLIKLILAQNQLSGQLSPKL-GSLAQLEHLDLSSNRLSN----SIPKSFGNLVKLHYLNLSN 628 (1075)
Q Consensus 554 Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~ 628 (1075)
|++|.|+......++. .+ ...+.|++|+|++|.|+. .++..+..+++|++|+|++
T Consensus 133 Ls~n~l~~~~~~~L~~--------------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 133 LQLNSLGPEACKDLRD--------------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp CCSSCCCHHHHHHHHH--------------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred cCCCCCCHHHHHHHHH--------------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 5555554322222211 11 234679999999999875 3445557788999999999
Q ss_pred cccccc----cchhcccccccceeeeccccccCc----hhhhhccccccceeecCCCccccCChhhhccc
Q 042958 629 NQFSRG----IPIKLEELIHLSELDLSHNFLREA----IPSQICIMQSLENLNLSHNSLVGLIPSCFEKM 690 (1075)
Q Consensus 629 N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 690 (1075)
|+|+.. ++..+...++|++|||++|.|+.. +...+...++|+.|||++|+|+......+..+
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 998753 356677788999999999999864 34445567899999999999987766666554
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=3.9e-10 Score=128.61 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=56.1
Q ss_pred CcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccccc
Q 042958 355 PSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNLRS 434 (1075)
Q Consensus 355 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 434 (1075)
..|..+..|+.+.+..+ +.......|.++.+|+.+.+..+ +..+....|.++++|+.+.+.++.++.+...+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34444444444444433 22333334444445555544322 33333344555555555555555554444455555555
Q ss_pred cceecccccccccCCCCCCccccccccccccCCccccCCCccccCc
Q 042958 435 LSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNL 480 (1075)
Q Consensus 435 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 480 (1075)
|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 555555433 33333445555555555555433 333334444443
No 405
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=2.6e-10 Score=130.08 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=83.6
Q ss_pred CCCcCCCCCCcceeeccccccCCCCccccCCCcccceeeeccccccccCChhhccCCCCCeEEeeccccccccccccccc
Q 042958 353 IPPSLGYLSNLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNSLSGSIPSEFGNL 432 (1075)
Q Consensus 353 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 432 (1075)
....+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3444555556666655443 22334445566666666666554 44455556666666666666543 444455566666
Q ss_pred cccceecccccccccCCCCCCccccccccccccCCccccCCCccccCcCCCCEEeCCCCcccCCCcccccCCC
Q 042958 433 RSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYDNSLSGSIPGEIGNLRSISNLALNNNKLSGSIPQSLGNLS 505 (1075)
Q Consensus 433 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 505 (1075)
.+|+.+.+.++.++.....+|.++++|+.+.|..+ ++.+-..+|.++++|+.+.+..+ ++......|.++.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 66666666666665455566666666666666543 55444556666666666666543 3333344455543
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=1.5e-11 Score=138.52 Aligned_cols=103 Identities=23% Similarity=0.217 Sum_probs=62.1
Q ss_pred Hhhccc-ccccccccccCcccccceeecCC-CcccCcccccccccccceEEEccccccccccchhcccccccceeeeccc
Q 042958 576 LILAQN-QLSGQLSPKLGSLAQLEHLDLSS-NRLSNSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHN 653 (1075)
Q Consensus 576 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 653 (1075)
++++++ +|+. +|. +..+++|++|+|++ |+|++..|..|+.+++|++|+|++|+|++..|..|..|++|+.|||++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555 5653 444 66666666666664 6666555566666666666666666666666666666666666666666
Q ss_pred cccCchhhhhccccccceeecCCCcccc
Q 042958 654 FLREAIPSQICIMQSLENLNLSHNSLVG 681 (1075)
Q Consensus 654 ~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 681 (1075)
+|++..+..+..++ |+.|+|++|++..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 66654444444443 6666666666653
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=4.6e-11 Score=134.59 Aligned_cols=103 Identities=23% Similarity=0.223 Sum_probs=66.3
Q ss_pred eeeeccc-cccccCChhhccCCCCCeEEeec-cccccccccccccccccceecccccccccCCCCCCccccccccccccC
Q 042958 389 MLSLGYN-KLSGSIPHSLGNLTNLATLDLYD-NSLSGSIPSEFGNLRSLSTLSLGYNKLSGSIPHSLGNLTNLDALYLYD 466 (1075)
Q Consensus 389 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 466 (1075)
.++++++ +++ .+|. +..+++|+.|+|++ |+|+++.+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 665 3555 66677777777764 777666666666677777777777776666666666666666666666
Q ss_pred CccccCCCccccCcCCCCEEeCCCCccc
Q 042958 467 NSLSGSIPGEIGNLRSISNLALNNNKLS 494 (1075)
Q Consensus 467 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 494 (1075)
|+|++..+..|..++ |+.|+|++|+|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666654444454444 666666666655
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.3e-10 Score=128.00 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=58.2
Q ss_pred CceeEEEeccccccc-cc----C--CcccCCCCCccEEEccCCCcc---------CCCCccccccCCCceeecccCcccc
Q 042958 48 GRVNSINLTSIGLKG-ML----H--DFSFSSFPHLAYLDLWHNQLY---------GNIPPQIGNISRLKYLDLSSNLFFG 111 (1075)
Q Consensus 48 ~~v~~l~l~~~~l~g-~~----~--~~~~~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 111 (1075)
.+|++|.+...++.| .+ . ..+...+++|+.|.+.++... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 468888877666543 11 0 012445778888888654321 124444566677777777776311
Q ss_pred cCCCCCCCCCCCcEEEccCcccCCCCCcccc--ccCCcceeecc
Q 042958 112 TIPPEIGHLSYLKTLQLFENQLNGSIPYEIG--RLSSLNYLALY 153 (1075)
Q Consensus 112 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~ 153 (1075)
.++. + .+++|++|+|..+.++......+. .+++|++|+|+
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 3 367777777777666533323333 46666666664
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=2.6e-10 Score=127.54 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccccCCcceeecccccccCCCCCCCCCCCCCCEEEcCCCCCCCCCCcccc--CccccceEeee
Q 042958 141 IGRLSSLNYLALYSNYLEDLIPPSLGNLSNLDTLHLYDNSLSDSIPSEFG--NLRSLSMLSLG 201 (1075)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls 201 (1075)
+..+++|+.|.|++|.-..+ +. + .+++|++|+|..|.++......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34455566666655421111 11 2 256667777666666533322332 56666666664
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=3.3e-11 Score=127.60 Aligned_cols=143 Identities=20% Similarity=0.137 Sum_probs=73.0
Q ss_pred CccceEEeCCCC-ceeEEEecc---cccccccCCcccCCCCCccEEEccCCCccCCCC-ccccccCCCce--eecccCcc
Q 042958 37 CAWVGIHCNRGG-RVNSINLTS---IGLKGMLHDFSFSSFPHLAYLDLWHNQLYGNIP-PQIGNISRLKY--LDLSSNLF 109 (1075)
Q Consensus 37 c~w~gv~C~~~~-~v~~l~l~~---~~l~g~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~--L~Ls~n~l 109 (1075)
|.|.|+.|+..+ +|+.+...+ .++.|.+.+..+..++. .|....|.-++.++ ..+...+.|+. ++++.|..
T Consensus 78 ~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 78 KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 899999999764 666555544 34444444332222221 11111122121111 12444555665 66677633
Q ss_pred ---cccCCCCCCCCCCCcEEEccCcccCC--CCCccccccCCcceeecccccccCCCCCCCCCCC--CCCEEEcCCCCCC
Q 042958 110 ---FGTIPPEIGHLSYLKTLQLFENQLNG--SIPYEIGRLSSLNYLALYSNYLEDLIPPSLGNLS--NLDTLHLYDNSLS 182 (1075)
Q Consensus 110 ---~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~ 182 (1075)
.+.++....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|.++
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 22222222467778888888888876 3345555566666666666665554 1122222 5555555555554
Q ss_pred C
Q 042958 183 D 183 (1075)
Q Consensus 183 ~ 183 (1075)
+
T Consensus 234 ~ 234 (267)
T 3rw6_A 234 D 234 (267)
T ss_dssp G
T ss_pred c
Confidence 4
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=1.2e-08 Score=107.89 Aligned_cols=120 Identities=30% Similarity=0.310 Sum_probs=82.2
Q ss_pred Hhhcccccccccccc-cCcccccce--eecCCCcccCcccc----cccccccceEEEcccccccc--ccchhcccccccc
Q 042958 576 LILAQNQLSGQLSPK-LGSLAQLEH--LDLSSNRLSNSIPK----SFGNLVKLHYLNLSNNQFSR--GIPIKLEELIHLS 646 (1075)
Q Consensus 576 L~l~~n~l~~~~~~~-~~~l~~L~~--L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~ 646 (1075)
+....|.-++.++-. |...+.|.. ++++.|+.. .++. ....+++|+.|+|++|+|++ .+|..+..+++|+
T Consensus 121 l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~ 199 (267)
T 3rw6_A 121 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 199 (267)
T ss_dssp HHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCC
T ss_pred HHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCC
Confidence 334444444443333 555666666 777888543 3332 23557888888888888887 4556777888888
Q ss_pred eeeeccccccCchhhhhcccc--ccceeecCCCccccCCh-------hhhcccccccEEee
Q 042958 647 ELDLSHNFLREAIPSQICIMQ--SLENLNLSHNSLVGLIP-------SCFEKMHGLLRIDI 698 (1075)
Q Consensus 647 ~L~ls~N~l~~~~~~~~~~~~--~L~~L~ls~N~l~~~~p-------~~~~~~~~l~~l~~ 698 (1075)
.|+|++|+|++. ..+..+. +|+.|+|++|++.+.+| ..+..+|+|+.||-
T Consensus 200 ~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 200 ILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 888888888874 3344444 88999999999987665 34778888888874
No 412
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3.9e-08 Score=99.18 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=76.8
Q ss_pred ccCcccccceeecCCC-cccC----cccccccccccceEEEccccccccc----cchhcccccccceeeeccccccCc--
Q 042958 590 KLGSLAQLEHLDLSSN-RLSN----SIPKSFGNLVKLHYLNLSNNQFSRG----IPIKLEELIHLSELDLSHNFLREA-- 658 (1075)
Q Consensus 590 ~~~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~-- 658 (1075)
.+...+.|++|+|++| .|+. .+...+...++|++|+|++|+|... +...+.....|++|+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3555667777888877 7754 2334455567788888888877542 233445557788888888888763
Q ss_pred --hhhhhccccccceeec--CCCccccC----ChhhhcccccccEEeecCCccC
Q 042958 659 --IPSQICIMQSLENLNL--SHNSLVGL----IPSCFEKMHGLLRIDISYNELQ 704 (1075)
Q Consensus 659 --~~~~~~~~~~L~~L~l--s~N~l~~~----~p~~~~~~~~l~~l~~s~N~~~ 704 (1075)
+...+...++|+.|+| ++|.|... +...+...++|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566677888888 77888644 3344555678888888888664
No 413
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.48 E-value=4.6e-08 Score=104.97 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=90.2
Q ss_pred cCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc--eeeEEEEeeccccchhh
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN--IVKFYGFCSHVRHSLAM 892 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~l~~ 892 (1075)
..|......+.|..+.||++...+|+.+++|+..... ...+..|+++++.+.+.+ +.+++++....+.. .+
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~-~~ 92 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRD-WL 92 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCE-EE
T ss_pred CCCceEecccCCCCceEEEEecCCCCeEEEEeCCccc------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCC-EE
Confidence 3444333334666799999987778889999975431 135678899988885444 55688877654332 22
Q ss_pred eecCccccCCCC--HHHHHHHHHHHHHHHHHHHhCC--------------------------------------------
Q 042958 893 ILSNNAAAKDLG--WTRRMNVIKGISDALSYMHNDC-------------------------------------------- 926 (1075)
Q Consensus 893 ~~~~~~~~~~l~--~~~~~~i~~~i~~~L~~LH~~~-------------------------------------------- 926 (1075)
+++...+ ..+. ......++.++++++..||+..
T Consensus 93 v~e~i~G-~~l~~~~~~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (264)
T 1nd4_A 93 LLGEVPG-QDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELF 171 (264)
T ss_dssp EEECCSS-EETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHH
T ss_pred EEEecCC-cccCcCcCCHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHH
Confidence 2222211 1111 1123468889999999999752
Q ss_pred -----------CCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 927 -----------FPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 927 -----------~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
.+.++|+|++|.||+++.++.+.|+|||.+..
T Consensus 172 ~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 172 ARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 01299999999999998766667999998763
No 414
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=98.47 E-value=1.7e-07 Score=100.52 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=98.7
Q ss_pred HHHhcCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeeccccc
Q 042958 811 IRATNDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRHS 889 (1075)
Q Consensus 811 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~ 889 (1075)
......|+.....+.|+.+.||++... ++.+++|+........ ...+.+|+++++.+. +..+.++++++...+..
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCC---HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 344567888888899999999999755 7899999986421111 235788999999884 67788899888764332
Q ss_pred hhheecCccccCCC-----CHHHHHHHHHHHHHHHHHHHhCC--------------------------------------
Q 042958 890 LAMILSNNAAAKDL-----GWTRRMNVIKGISDALSYMHNDC-------------------------------------- 926 (1075)
Q Consensus 890 l~~~~~~~~~~~~l-----~~~~~~~i~~~i~~~L~~LH~~~-------------------------------------- 926 (1075)
+ ++++...+ ..+ +......++.++++++..||+..
T Consensus 86 ~-lv~e~i~G-~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (263)
T 3tm0_A 86 N-LLMSEADG-VLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP 163 (263)
T ss_dssp E-EEEECCSS-EEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred E-EEEEecCC-eehhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence 2 22222211 111 12234578899999999999821
Q ss_pred ------------------CCCeEEecCCCCCeeeCCCCCceEecccccc
Q 042958 927 ------------------FPPIVHRDISSKNVLLDFDNEAHVSDFGIAK 957 (1075)
Q Consensus 927 ------------------~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~ 957 (1075)
.+.++|+|+++.||+++.+..+.|+||+.+.
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1358999999999999875556799998775
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=4.5e-08 Score=98.67 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=71.3
Q ss_pred cccCcccccceeecCCCcccC----cccccccccccceEEEccccccccc----cchhcccccccceeee--ccccccCc
Q 042958 589 PKLGSLAQLEHLDLSSNRLSN----SIPKSFGNLVKLHYLNLSNNQFSRG----IPIKLEELIHLSELDL--SHNFLREA 658 (1075)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l--s~N~l~~~ 658 (1075)
..+...+.|++|||++|.|+. .+...+...++|++|+|++|.|+.. +...+.....|++|+| ++|.|...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 345556789999999999975 2345556668899999999999753 4566777888999999 88999875
Q ss_pred h----hhhhccccccceeecCCCccc
Q 042958 659 I----PSQICIMQSLENLNLSHNSLV 680 (1075)
Q Consensus 659 ~----~~~~~~~~~L~~L~ls~N~l~ 680 (1075)
. ...+...++|+.|+|++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 344455588999999999986
No 416
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.36 E-value=8.8e-07 Score=99.82 Aligned_cols=136 Identities=13% Similarity=0.225 Sum_probs=94.9
Q ss_pred CceecccCceEEEEEEECCCCEEEEEEcc--CCCCCchhHHHHHHHHHHHHhcCC--cCceeeEEEEeecccc--chhhe
Q 042958 820 EHCIGKGGQGSVYKAELASGEIVAVKKFH--SPLPGEMTFQQEFLNEVKALTEIR--HRNIVKFYGFCSHVRH--SLAMI 893 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~--~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~--~l~~~ 893 (1075)
.+.++.|.++.||+.+.. +..+++|+.. ... .......+.+|+++++.+. +..+.++++++.+... ...++
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~--~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSK--LLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCC--CCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 467899999999999776 5678889875 221 1112356788999999986 4568889998876532 11122
Q ss_pred ecCccc-------cCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------------
Q 042958 894 LSNNAA-------AKDLGWTRRMNVIKGISDALSYMHNDC---------------------------------------- 926 (1075)
Q Consensus 894 ~~~~~~-------~~~l~~~~~~~i~~~i~~~L~~LH~~~---------------------------------------- 926 (1075)
++...+ ...++..++..++.+++++|..||+..
T Consensus 120 me~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (359)
T 3dxp_A 120 MEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDS 199 (359)
T ss_dssp EECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred EEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHH
Confidence 222211 123567888999999999999999731
Q ss_pred ---------------CCCeEEecCCCCCeeeCCCCC--ceEeccccccc
Q 042958 927 ---------------FPPIVHRDISSKNVLLDFDNE--AHVSDFGIAKF 958 (1075)
Q Consensus 927 ---------------~~~ivH~Dlk~~Nill~~~~~--~kl~DfGla~~ 958 (1075)
.+.++|||+++.||+++.++. +.|.||+.+..
T Consensus 200 ~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 200 LMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999998764 58999998875
No 417
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.20 E-value=8.9e-07 Score=97.19 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=111.1
Q ss_pred CceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcC-CcCc--eeeEEEEeeccccchh-h-ee
Q 042958 820 EHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEI-RHRN--IVKFYGFCSHVRHSLA-M-IL 894 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~n--iv~l~~~~~~~~~~l~-~-~~ 894 (1075)
.+.++.|....||+.. +.+++|+... ......+.+|.++++.+ .+.. +.+++.+......... + ++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~-----~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKH-----SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESS-----HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCC-----cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence 4569999999999873 5688998542 13356788999999888 3332 4455555433322111 1 12
Q ss_pred cCccc-------cCCCCHHHHHHHHHHHHHHHHHHHhCC-----------------------------------------
Q 042958 895 SNNAA-------AKDLGWTRRMNVIKGISDALSYMHNDC----------------------------------------- 926 (1075)
Q Consensus 895 ~~~~~-------~~~l~~~~~~~i~~~i~~~L~~LH~~~----------------------------------------- 926 (1075)
....+ ...++..++..++.++++.+..||+..
T Consensus 96 ~~i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 96 TKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp ECCCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cccCCeECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 11111 123455667889999999999999621
Q ss_pred --------------CCCeEEecCCCCCeeeCC--CCCceEeccccccccCCCCCceeccc---------------cccCc
Q 042958 927 --------------FPPIVHRDISSKNVLLDF--DNEAHVSDFGIAKFLKPDSSNWTELA---------------GTYGY 975 (1075)
Q Consensus 927 --------------~~~ivH~Dlk~~Nill~~--~~~~kl~DfGla~~~~~~~~~~~~~~---------------gt~~y 975 (1075)
.+.++|+|++|.||+++. ...+.|+||+.+....+... ..... ...++
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~l~~Y~~ 254 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDND-FISLMEDDEEYGMEFVSKILNHYKH 254 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHH-HHTTCCTTTSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHH-HHHHHhhccccCHHHHHHHHHHcCC
Confidence 135899999999999998 45678999999876432111 00000 00011
Q ss_pred cC-ccccccCCCCcccchHhHHHHHHHHHhCCCCC
Q 042958 976 VA-PELAYTMKVTEKCDVYSFGVLALEVIKGKHPR 1009 (1075)
Q Consensus 976 ~a-PE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~ 1009 (1075)
.. |+.... .....+.|++|.++|++.+|+.+|
T Consensus 255 ~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 255 KDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp SCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 11 222111 112258999999999999999885
No 418
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=97.76 E-value=0.00011 Score=81.09 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=91.1
Q ss_pred CCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCc----CceeeEEEEeeccccchh
Q 042958 816 DFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRH----RNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 816 ~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~l~ 891 (1075)
.+...+.++.|....||+. |+.+++|+... ......+.+|.++++.+.+ ..|.+++++ ....+.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~-----~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---~~~~lv 105 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR-----DSVRISQKRELELYRFLENCKLSYQIPAVVYQ---SDRFNI 105 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS-----HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---CSSCEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc-----HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec---CCcEEE
Confidence 6667788999999999998 67788997632 2224568899999888865 234555554 222211
Q ss_pred heecCccc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCC---------------------------------------
Q 042958 892 MILSNNAA-----AKDLGWTRRMNVIKGISDALSYMHNDCF--------------------------------------- 927 (1075)
Q Consensus 892 ~~~~~~~~-----~~~l~~~~~~~i~~~i~~~L~~LH~~~~--------------------------------------- 927 (1075)
+..-.... ...++..++..++.++++.+..||+...
T Consensus 106 me~i~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (320)
T 3r70_A 106 MKYIKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEM 185 (320)
T ss_dssp EECCCCBCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred EeecCCccccccccccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccccccc
Confidence 11111110 1123556677889999999999996422
Q ss_pred ---------------------CCeEEecCCCCCeeeCCCCCceEeccccccccC
Q 042958 928 ---------------------PPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLK 960 (1075)
Q Consensus 928 ---------------------~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~ 960 (1075)
+.++|+|++|.||+++.+..+.|+||+.+....
T Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 186 LEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp HHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred hHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 235999999999999986667999999987543
No 419
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=2e-05 Score=76.99 Aligned_cols=82 Identities=10% Similarity=0.129 Sum_probs=34.8
Q ss_pred CcceeeccccccCCCCccccCCCcccceeeecccc-ccccCChhhccC----CCCCeEEeecc-cccccccccccccccc
Q 042958 362 NLATLYLYSNSLFDSIPSELGNLRSLSMLSLGYNK-LSGSIPHSLGNL----TNLATLDLYDN-SLSGSIPSEFGNLRSL 435 (1075)
Q Consensus 362 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N-~l~~~~~~~~~~l~~L 435 (1075)
+|++|+++++.++..--..+.++++|+.|+|++|. |+...-..+..+ ++|++|+|++| +||+..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444433333334444445555555442 333222333332 23455555544 2443322334444444
Q ss_pred ceeccccc
Q 042958 436 STLSLGYN 443 (1075)
Q Consensus 436 ~~L~L~~N 443 (1075)
++|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 420
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=1.6e-05 Score=77.69 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=53.6
Q ss_pred cccceeeeccccccccCChhhccCCCCCeEEeeccc-cccccccccccc----cccceecccccc-cccCCCCCCccccc
Q 042958 385 RSLSMLSLGYNKLSGSIPHSLGNLTNLATLDLYDNS-LSGSIPSEFGNL----RSLSTLSLGYNK-LSGSIPHSLGNLTN 458 (1075)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 458 (1075)
..|+.||++++.|+...-..+.++++|++|+|++|. |++..-..++.+ ++|++|+|++|. |++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888877666677788888888888874 665443444443 367777777763 55433333445555
Q ss_pred cccccccCC
Q 042958 459 LDALYLYDN 467 (1075)
Q Consensus 459 L~~L~L~~N 467 (1075)
|+.|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 421
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.57 E-value=0.00029 Score=75.98 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=47.6
Q ss_pred CCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcC---ceeeEEEEe
Q 042958 819 DEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHR---NIVKFYGFC 883 (1075)
Q Consensus 819 ~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~ 883 (1075)
..+.+|.|.++.||+++..+|+.++||+....... ....|..|++.++.+++. .+++++++.
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~---~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~ 83 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA---LDGLFRAEALGLDWLGRSFGSPVPQVAGWD 83 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC---CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcc---hhHHHHHHHHHHHHHHhcCCCCcCeEEEec
Confidence 35679999999999999888999999996432111 135788999999999765 577777653
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=6.4e-05 Score=74.94 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=73.9
Q ss_pred cccccceeecCCC-cccC----cccccccccccceEEEcccccccc----ccchhcccccccceeeeccccccCchhh--
Q 042958 593 SLAQLEHLDLSSN-RLSN----SIPKSFGNLVKLHYLNLSNNQFSR----GIPIKLEELIHLSELDLSHNFLREAIPS-- 661 (1075)
Q Consensus 593 ~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~~~-- 661 (1075)
.-+.|++|+|++| +|.. .+.+.+..-+.|+.|+|++|+|.. .+...+..-+.|++|+|++|+|....-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456888888885 7753 344556667788888888888864 3344556677888889988888864433
Q ss_pred --hhccccccceeecCCC---cccc----CChhhhcccccccEEeecCC
Q 042958 662 --QICIMQSLENLNLSHN---SLVG----LIPSCFEKMHGLLRIDISYN 701 (1075)
Q Consensus 662 --~~~~~~~L~~L~ls~N---~l~~----~~p~~~~~~~~l~~l~~s~N 701 (1075)
.+..-..|+.|+|++| .+.. .+...+..-++|..|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3333456888888865 3332 24455666778888887655
No 423
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=97.30 E-value=0.0011 Score=72.25 Aligned_cols=131 Identities=13% Similarity=0.098 Sum_probs=86.2
Q ss_pred CceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcC---ceeeEEEEeeccccchhheecC
Q 042958 820 EHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHR---NIVKFYGFCSHVRHSLAMILSN 896 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~l~~~~~~ 896 (1075)
.+.++.|....||+. |+.+++|+.. .......+..|.++++.+.+. .|.+++.++........+++..
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~-----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK-----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES-----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC-----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 456889999999998 5678888842 123356789999999999652 3566776664222211122222
Q ss_pred ccc-------cCCCCHHHHHHHHHHHHHHHHHHHhCC-------------------------------------------
Q 042958 897 NAA-------AKDLGWTRRMNVIKGISDALSYMHNDC------------------------------------------- 926 (1075)
Q Consensus 897 ~~~-------~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------------- 926 (1075)
..+ ...++..++..++.++++.+..||+..
T Consensus 95 i~G~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 95 VQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp CCSEECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred cCCeECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 211 112344556667777777777777532
Q ss_pred --------------CCCeEEecCCCCCeeeCC---CCCc-eEecccccccc
Q 042958 927 --------------FPPIVHRDISSKNVLLDF---DNEA-HVSDFGIAKFL 959 (1075)
Q Consensus 927 --------------~~~ivH~Dlk~~Nill~~---~~~~-kl~DfGla~~~ 959 (1075)
.+.++|+|+++.||+++. ++.+ .|+||+.+...
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 235699999999999997 4564 79999988753
No 424
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.28 E-value=0.00067 Score=75.86 Aligned_cols=58 Identities=9% Similarity=0.165 Sum_probs=41.7
Q ss_pred CCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc--eeeEEEEeec
Q 042958 819 DEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN--IVKFYGFCSH 885 (1075)
Q Consensus 819 ~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~ 885 (1075)
..+.++.|....||+.+. +|+.+++|+.... ..+..|..+++.+.... +.++++++..
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~--------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~ 104 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA--------DGFYKDRYVYRHFASAALPIPEVLDIGEF 104 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC--------HHHHHHHHHHHHHCCSSSCCCCEEEEEES
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch--------hhHHHHHHHHHHHHhcCCCCceEEEeccC
Confidence 356789999999999976 4888999987421 25778888888885433 4566665544
No 425
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=0.00021 Score=71.18 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=63.2
Q ss_pred ccCcccccceeecCCCcccC----cccccccccccceEEEccccccccc----cchhcccccccceeeeccc---cccCc
Q 042958 590 KLGSLAQLEHLDLSSNRLSN----SIPKSFGNLVKLHYLNLSNNQFSRG----IPIKLEELIHLSELDLSHN---FLREA 658 (1075)
Q Consensus 590 ~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N---~l~~~ 658 (1075)
.+..-+.|+.|+|++|+|.. .+.+.+..-+.|++|+|++|+|+.. +-..+..-..|++|+|++| .+...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 34455678889999999875 3344455667899999999998753 3344556677999999865 44432
Q ss_pred ----hhhhhccccccceeecCCCccc
Q 042958 659 ----IPSQICIMQSLENLNLSHNSLV 680 (1075)
Q Consensus 659 ----~~~~~~~~~~L~~L~ls~N~l~ 680 (1075)
+...+..-++|+.|+++.|.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3444555578999999888764
No 426
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=96.96 E-value=0.0007 Score=75.79 Aligned_cols=66 Identities=2% Similarity=-0.109 Sum_probs=41.6
Q ss_pred cee-cccCceEEEEEEEC-------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-c--CceeeEEEEeecc
Q 042958 821 HCI-GKGGQGSVYKAELA-------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-H--RNIVKFYGFCSHV 886 (1075)
Q Consensus 821 ~~l-G~G~~g~Vy~~~~~-------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~ 886 (1075)
+.| +.|....+|+.+.. +++.+++|+..............+.+|+.+++.+. + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~ 102 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG 102 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC
Confidence 557 88999999998654 26788999864321000000134667888888774 3 3567788777554
No 427
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=96.95 E-value=0.00098 Score=71.30 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=83.6
Q ss_pred ceecccCce-EEEEEEEC-CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeeccccchhheecCc
Q 042958 821 HCIGKGGQG-SVYKAELA-SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRHSLAMILSNN 897 (1075)
Q Consensus 821 ~~lG~G~~g-~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~l~~~~~~~ 897 (1075)
+.+..|..| .||+.... ++..+++|+-.. .....+.+|...++.+. +--|.++++++.+.+..+.+ ++..
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lv-me~l 102 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKG------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLL-TTAI 102 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEET------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE-EECC
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCC------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEE-EEee
Confidence 345566665 69988654 466789998542 12457888999998883 33467788888765443222 2211
Q ss_pred cccCC------CCHHHHHHHHHHHHHHHHHHHhCCC--------------------------------------------
Q 042958 898 AAAKD------LGWTRRMNVIKGISDALSYMHNDCF-------------------------------------------- 927 (1075)
Q Consensus 898 ~~~~~------l~~~~~~~i~~~i~~~L~~LH~~~~-------------------------------------------- 927 (1075)
.+ .. .....+..++.++++.+..||+...
T Consensus 103 ~G-~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (272)
T 4gkh_A 103 PG-KTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWK 181 (272)
T ss_dssp CS-EEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHH
T ss_pred CC-ccccccccCCHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHH
Confidence 11 11 0112334566777777777775321
Q ss_pred -----------CCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 928 -----------PPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 928 -----------~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+.++|+|+.+.||+++.++.+-|+||+.+..
T Consensus 182 ~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 182 EMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 1379999999999999877677999998764
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=96.85 E-value=0.0022 Score=69.25 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=46.3
Q ss_pred cCCCCCceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCc---CceeeEEEE
Q 042958 815 NDFDDEHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRH---RNIVKFYGF 882 (1075)
Q Consensus 815 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~ 882 (1075)
.+....+.+|.|..+.||+.+..||+.|+||+........ ...|..|.+.|+.+.. -.+.+++++
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~---~~~~~~Ea~~L~~L~~~~~vpvP~v~~~ 82 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPAL---DGLFRAEALGLDWLGRSFGSPVPQVAGW 82 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC---TTHHHHHHHHHHHHTCSTTCCSCCEEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch---hhHHHHHHHHHHHHHhhCCCCcceEEec
Confidence 3445567899999999999999999999999865432221 2467889988888732 234555554
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0026 Score=59.12 Aligned_cols=58 Identities=28% Similarity=0.291 Sum_probs=39.3
Q ss_pred ceeecCCCccc-CcccccccccccceEEEccccccccccchhcccccccceeeeccccccC
Q 042958 598 EHLDLSSNRLS-NSIPKSFGNLVKLHYLNLSNNQFSRGIPIKLEELIHLSELDLSHNFLRE 657 (1075)
Q Consensus 598 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 657 (1075)
..+|.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+.+|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777775 24554433 357777777777777666667777777777777777754
No 430
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=96.40 E-value=0.0048 Score=70.04 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=38.2
Q ss_pred CceecccCceEEEEEEEC-CCCEEEEEEccCCCC--Cc--hhHHHHHHHHHHHHhcCCc--C-ceeeEEEEe
Q 042958 820 EHCIGKGGQGSVYKAELA-SGEIVAVKKFHSPLP--GE--MTFQQEFLNEVKALTEIRH--R-NIVKFYGFC 883 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~--~~~~~~~~~E~~~l~~l~h--~-niv~l~~~~ 883 (1075)
.+.+|.|..+.||++... +++.|+||....... .. ....+.+..|.++++.+.. + .+.+++.+.
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d 106 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD 106 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc
Confidence 357999999999999654 478899998643211 00 0112456678888887632 3 345566543
No 431
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0035 Score=58.31 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=19.8
Q ss_pred cceeecCCCccccCChhhhcccccccEEeecCCccCCC
Q 042958 669 LENLNLSHNSLVGLIPSCFEKMHGLLRIDISYNELQGP 706 (1075)
Q Consensus 669 L~~L~ls~N~l~~~~p~~~~~~~~l~~l~~s~N~~~~~ 706 (1075)
|+.|+|++|.|+.+.+..|..++.|+.|++++|+|.+.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 44555555555544445555555555555555555443
No 432
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=95.90 E-value=0.012 Score=63.92 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=75.6
Q ss_pred CceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCce-eeEEEEeeccccchhheecCcc
Q 042958 820 EHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNI-VKFYGFCSHVRHSLAMILSNNA 898 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~l~~~~~~~~ 898 (1075)
.+.++.|....+|+. +.+++|+........ .....|+.+++.+....+ .++++++.+.+..+..++ .
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~----~~r~~E~~~l~~l~~~g~~P~~~~~~~~~~~~v~e~i---~ 90 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY----INRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYI---A 90 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC----C----CCHHHHHHHHHHHHHTTSSCCEEEECTTTCCEEEECC---T
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccce----eCHHHHHHHHHHHHHcCCCCceEEEECCCCEEEEeec---C
Confidence 678999999999999 558888875421111 112457777766632222 456655443232222222 1
Q ss_pred ccCCCCHHHH---HHHHHHHHHHHHHHHhCC-------------------------------------------------
Q 042958 899 AAKDLGWTRR---MNVIKGISDALSYMHNDC------------------------------------------------- 926 (1075)
Q Consensus 899 ~~~~l~~~~~---~~i~~~i~~~L~~LH~~~------------------------------------------------- 926 (1075)
.+..+..... ..++.++++.|+-+|+..
T Consensus 91 ~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 170 (301)
T 3dxq_A 91 GAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHP 170 (301)
T ss_dssp TCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSC
T ss_pred CCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcC
Confidence 2333333222 225566666666676532
Q ss_pred -CCCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 927 -FPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 927 -~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
.+.++|+|+.+.||+ ..++.+.++||..+..-
T Consensus 171 ~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g 203 (301)
T 3dxq_A 171 LPLAACHCDPLCENFL-DTGERMWIVDWEYSGMN 203 (301)
T ss_dssp CCCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred CCceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence 123799999999999 56778899999988653
No 433
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=95.73 E-value=0.045 Score=62.39 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=47.8
Q ss_pred CCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCceecccc--ccCccCccccccC---CCCcccchHhHHHHHHHH
Q 042958 928 PPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAG--TYGYVAPELAYTM---KVTEKCDVYSFGVLALEV 1002 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~s~G~vl~el 1002 (1075)
+.++|+|+++.||+++.++ ++++||+.+....+... ...... ...|.+|+..... ......++......+|+.
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D-la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD-IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNL 309 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH-HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH-HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 4899999999999999776 99999998875332111 011111 1346666654311 112234556777788877
Q ss_pred HhCC
Q 042958 1003 IKGK 1006 (1075)
Q Consensus 1003 ltg~ 1006 (1075)
++++
T Consensus 310 y~~~ 313 (420)
T 2pyw_A 310 FNKR 313 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 434
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=95.71 E-value=0.036 Score=60.06 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=43.6
Q ss_pred CceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC---cCceeeEEEEeec
Q 042958 820 EHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR---HRNIVKFYGFCSH 885 (1075)
Q Consensus 820 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~ 885 (1075)
.+.|+.|....+|+.+.. +..+++|+.... ....+..|.+.++.+. ...|.++++++..
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~ 102 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNS 102 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec
Confidence 467999999999999764 778899986421 2467889999888883 2557777776543
No 435
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=95.57 E-value=0.031 Score=61.66 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=34.4
Q ss_pred HHHHHHHHHh----------CCCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 915 ISDALSYMHN----------DCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 915 i~~~L~~LH~----------~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+.+++++|+. ...+.++|+|+++.||+++.++.+.|+||+.+..
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 199 GLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 4456677763 0234899999999999998888999999998753
No 436
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.78 E-value=0.098 Score=52.23 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCcc
Q 042958 900 AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPE 979 (1075)
Q Consensus 900 ~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE 979 (1075)
+.++++++.|.++.|.+.+|.-.-.... + ..+=+.|..|++..+|.+...+ +.+. .....+.|||
T Consensus 43 ~~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------~~~~~~~~pe 107 (229)
T 2yle_A 43 NQPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD------------AGEPPPVAGK 107 (229)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C------------------------C
T ss_pred CCCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc------------ccccCCCChh
Confidence 5679999999999999999877622111 1 1223456889999999988764 1111 1123466888
Q ss_pred ccccCCCCcccchHhHHHHHHHHHhCCCC
Q 042958 980 LAYTMKVTEKCDVYSFGVLALEVIKGKHP 1008 (1075)
Q Consensus 980 ~~~~~~~~~~~Dv~s~G~vl~elltg~~p 1008 (1075)
... ...+.+.=|||+|+++|.-+--..|
T Consensus 108 ~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 108 LGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp CSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred hcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 763 3456788999999999999875555
No 437
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=94.73 E-value=0.072 Score=60.73 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=38.9
Q ss_pred ceecccCceEEEEEEECC--------CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCc-eeeEEEEe
Q 042958 821 HCIGKGGQGSVYKAELAS--------GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRN-IVKFYGFC 883 (1075)
Q Consensus 821 ~~lG~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~ 883 (1075)
+.|+.|....||++...+ ++.|++|+.... .. .+.+..|..+++.+...+ ..++++.+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~---~~~li~E~~~l~~L~~~g~~P~l~~~~ 145 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ET---ESHLVAESVIFTLLSERHLGPKLYGIF 145 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CC---HHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--Cc---HHHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 568889999999998753 578999987432 11 134557888888874333 35566654
No 438
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=94.03 E-value=0.075 Score=58.37 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCeEEecCCCCCeeeCCC----CCceEeccccccccC
Q 042958 928 PPIVHRDISSKNVLLDFD----NEAHVSDFGIAKFLK 960 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~----~~~kl~DfGla~~~~ 960 (1075)
+.++|||+.+.||+++.+ +.+.|+||+.+..-.
T Consensus 183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~ 219 (333)
T 3csv_A 183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH 219 (333)
T ss_dssp CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence 479999999999999875 678999999887543
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=93.98 E-value=0.18 Score=57.64 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=36.1
Q ss_pred ceecccCceEEEEEEECC-CCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCCcCce-eeEEEEe
Q 042958 821 HCIGKGGQGSVYKAELAS-GEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIRHRNI-VKFYGFC 883 (1075)
Q Consensus 821 ~~lG~G~~g~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~ 883 (1075)
+.|+.|....+|+....+ +..+++|+.......-. .-..|..+++.+...++ .++++++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~i----dR~~E~~vl~~L~~~gl~P~ll~~~ 174 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEII----NREREKKISCILYNKNIAKKIYVFF 174 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCS----CHHHHHHHHHHHTTSSSBCCEEEEE
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhc----CHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 568889999999998764 47888998743211111 11478888887754333 4566655
No 440
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=93.90 E-value=0.16 Score=55.47 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred ccHHHHHHHhcCCCC-----CceecccCceEEEEEEECCCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC
Q 042958 805 IVYEEIIRATNDFDD-----EHCIGKGGQGSVYKAELASGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR 872 (1075)
Q Consensus 805 ~~~~e~~~~~~~~~~-----~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~ 872 (1075)
.+.+++....+.|.. ...++ |....||+....+|+.+++|+...... . ...+..|..+++.+.
T Consensus 11 l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~---~~~~~~E~~~~~~L~ 78 (328)
T 1zyl_A 11 LHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERW-T---ADQILEEHQFALQLV 78 (328)
T ss_dssp CCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTS-C---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCC-C---HHHHHHHHHHHHHHH
Confidence 344444444444432 24566 888899998777787899999863211 1 345666777777663
No 441
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=93.75 E-value=0.21 Score=54.39 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHHHHHhC----CCCCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 915 ISDALSYMHND----CFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 915 i~~~L~~LH~~----~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+.+.++++++. ..++++|+|+.+.||+++.+..+.|+||+.+..
T Consensus 170 l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 170 IRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp HHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 44556666532 124799999999999998775568999987753
No 442
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=93.58 E-value=0.12 Score=57.42 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=71.3
Q ss_pred ceecccCceEEEEEEEC--------CCCEEEEEEccCCCCCchhHHHHHHHHHHHHhcCC-cCceeeEEEEeeccccchh
Q 042958 821 HCIGKGGQGSVYKAELA--------SGEIVAVKKFHSPLPGEMTFQQEFLNEVKALTEIR-HRNIVKFYGFCSHVRHSLA 891 (1075)
Q Consensus 821 ~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~l~ 891 (1075)
+.+..|....+|+.... +++.|++|+..... . ....+.+|.++++.+. +.-..++++++... .+.
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~---~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~g--~v~ 129 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-Q---GVDSLVLESVMFAILAERSLGPQLYGVFPEG--RLE 129 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----C---CHHHHHHHHHHHHHHHHTTSSCCEEEEETTE--EEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-c---hHHHHHHHHHHHHHHHhcCCCCeEEEEcCCc--cEE
Confidence 56778888999999764 25789999863211 1 1345668988888773 32235566655331 111
Q ss_pred hee--------------------------cCc--cccCCCC--HHHHHHHHHHHHH-------------------HHHHH
Q 042958 892 MIL--------------------------SNN--AAAKDLG--WTRRMNVIKGISD-------------------ALSYM 922 (1075)
Q Consensus 892 ~~~--------------------------~~~--~~~~~l~--~~~~~~i~~~i~~-------------------~L~~L 922 (1075)
.++ +.. ..+.... |.+..++..++.. .+++|
T Consensus 130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 209 (379)
T 3feg_A 130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNL 209 (379)
T ss_dssp ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHH
T ss_pred EEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHH
Confidence 110 000 0011122 3444444433321 22333
Q ss_pred ----HhC-CCCCeEEecCCCCCeeeCCC----CCceEeccccccc
Q 042958 923 ----HND-CFPPIVHRDISSKNVLLDFD----NEAHVSDFGIAKF 958 (1075)
Q Consensus 923 ----H~~-~~~~ivH~Dlk~~Nill~~~----~~~kl~DfGla~~ 958 (1075)
... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 210 ~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 210 RKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 222 22368999999999999876 6899999988764
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=91.62 E-value=0.16 Score=55.83 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.3
Q ss_pred CCeEEecCCCCCeeeCCCCCceEecccccccc
Q 042958 928 PPIVHRDISSKNVLLDFDNEAHVSDFGIAKFL 959 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~ 959 (1075)
+.++|+|+.+.||+++.++.+.++||+.+...
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 47999999999999998889999999887653
No 444
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=91.51 E-value=0.14 Score=57.04 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 928 PPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
+.++|+|+++.||+++.+. +.++||..+..
T Consensus 212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~ 241 (369)
T 3c5i_A 212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF 241 (369)
T ss_dssp EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence 3689999999999998654 89999987763
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=89.95 E-value=0.5 Score=52.72 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCeEEecCCCCCeeeCCC------CCceEeccccccc
Q 042958 928 PPIVHRDISSKNVLLDFD------NEAHVSDFGIAKF 958 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~------~~~kl~DfGla~~ 958 (1075)
..++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 244 ~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 244 VVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred eeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 368899999999999887 7899999987753
No 446
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.00 E-value=0.43 Score=33.96 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhheecc
Q 042958 758 LLGIVALLISLIGLFFKFQRRNN 780 (1075)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~r~~~ 780 (1075)
+.++++++++++.+++++|||++
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh
Confidence 33344444444444445554443
No 447
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=84.68 E-value=0.4 Score=33.99 Aligned_cols=21 Identities=19% Similarity=0.312 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhheecc
Q 042958 760 GIVALLISLIGLFFKFQRRNN 780 (1075)
Q Consensus 760 ~~~~~~~~~~~~~~~~~r~~~ 780 (1075)
++++++++++..++++|||++
T Consensus 19 Gv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 19 GLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 344434444444444444433
No 448
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.96 E-value=1 Score=31.91 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhheec
Q 042958 756 FPLLGIVALLISLIGLFFKFQRRN 779 (1075)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~r~~ 779 (1075)
+.+++++.++++++.+++++|||+
T Consensus 16 ~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 16 SAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhheehhh
Confidence 334443333333333334444443
No 449
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=78.46 E-value=1.9 Score=48.54 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.4
Q ss_pred CCeEEecCCCCCeeeCCCCCceEeccccccc
Q 042958 928 PPIVHRDISSKNVLLDFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 928 ~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~ 958 (1075)
..++|+|+.+.||+ +.++.+.++||..|..
T Consensus 262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp EEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred ceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 36899999999999 7788999999988864
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=73.52 E-value=0.41 Score=54.91 Aligned_cols=62 Identities=6% Similarity=-0.102 Sum_probs=17.4
Q ss_pred CCceecccCceEEEEEEECC-CCEEEE------EEccCCCCCchhHHHHHHHHHHHHhcCCcCceeeEEEEee
Q 042958 819 DEHCIGKGGQGSVYKAELAS-GEIVAV------KKFHSPLPGEMTFQQEFLNEVKALTEIRHRNIVKFYGFCS 884 (1075)
Q Consensus 819 ~~~~lG~G~~g~Vy~~~~~~-g~~vav------K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 884 (1075)
..+.+| ||.||+|.+.. ..+||| |..+.... ..+....|.+|..+++..+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~-~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGV-SEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC------------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccc-cccccccccccccccccccccccCCCcceEE
Confidence 345676 99999997763 367888 76654222 2233457888999999999999999887653
No 451
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=70.66 E-value=5.9 Score=44.27 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=25.0
Q ss_pred CeEEecCCCCCeee------CCCCCceEeccccccc
Q 042958 929 PIVHRDISSKNVLL------DFDNEAHVSDFGIAKF 958 (1075)
Q Consensus 929 ~ivH~Dlk~~Nill------~~~~~~kl~DfGla~~ 958 (1075)
.++|+|+.+.||++ +++..++++||-.|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4566799999988764
No 452
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=69.49 E-value=3.1 Score=41.47 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=64.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCcc
Q 042958 900 AKDLGWTRRMNVIKGISDALSYMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPE 979 (1075)
Q Consensus 900 ~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE 979 (1075)
-...+...+++++.+|+....+++.. +|--+.|+|++++.++.+++.-.|+-..+.+ .
T Consensus 75 ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~~l~P-----------------~ 132 (215)
T 4ann_A 75 IKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQNVVDP-----------------L 132 (215)
T ss_dssp GGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETTTBSC-----------------C
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCccCCCC-----------------C
Confidence 44568889999999999999888777 8999999999999999999988876543322 1
Q ss_pred ccccCCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 980 LAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 980 ~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
..+...=.-.+=+++..+++++..|+
T Consensus 133 -----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 133 -----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 12222233457788999999999886
No 453
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=61.92 E-value=4.9 Score=40.21 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEEecCCCCCeeeCCCCCceEeccccccccCCCCCceeccccccCccCcc
Q 042958 901 KDLGWTRRMNVIKGISDALS-YMHNDCFPPIVHRDISSKNVLLDFDNEAHVSDFGIAKFLKPDSSNWTELAGTYGYVAPE 979 (1075)
Q Consensus 901 ~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE 979 (1075)
..++...+++++.+|+.... +++.. +|--+.|+|+++|.++.+++.-.|+-..+. |.
T Consensus 80 ~~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL~f~~~~~p~i~hRGi~~~lp-----------------P~ 137 (219)
T 4ano_A 80 RKTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENLMFNRALEPFFLHVGVKESLP-----------------PD 137 (219)
T ss_dssp HTSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGEEECTTCCEEESCCEETTTBS-----------------SC
T ss_pred HhcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceEEEeCCCcEEEEEcCCcccCC-----------------CC
Confidence 45678888999999999888 77766 899999999999999999998887654332 22
Q ss_pred ccccCCCCcccchHhHHHHHHHHHhCCCCCC
Q 042958 980 LAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 1010 (1075)
Q Consensus 980 ~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~ 1010 (1075)
. .+...=.-.+=+++..++.++..|+
T Consensus 138 e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 138 E-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp S-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred C-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 1 1112123357788888888888875
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.84 E-value=22 Score=30.53 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=20.2
Q ss_pred cCCCCcccCCCccCcEEEccCCCCCCCcCCCCCccccccceecc
Q 042958 278 SGSIPSEFGNLRSLSMLNLGYNKLNGIIPHSLGNLTNLATLYIH 321 (1075)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 321 (1075)
+.+-..+|.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3333345555555555555433 333444455555555555444
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.51 E-value=35 Score=29.22 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=19.7
Q ss_pred CCCccccCccccceEeeeccccccccCCCCcCCCCcCceeccc
Q 042958 184 SIPSEFGNLRSLSMLSLGYNKFSGSIPHSLGNLTNLATLYLHN 226 (1075)
Q Consensus 184 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 226 (1075)
+-..+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444555555555554433 2223344555555555555543
No 456
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=51.43 E-value=6.4 Score=27.53 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=2.6
Q ss_pred HHhhhhe
Q 042958 771 LFFKFQR 777 (1075)
Q Consensus 771 ~~~~~~r 777 (1075)
+++++||
T Consensus 33 ~~~~~rR 39 (41)
T 2k9y_A 33 GFFIHRR 39 (41)
T ss_dssp HHSSSSS
T ss_pred heeEeee
Confidence 3333333
No 457
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=45.81 E-value=13 Score=25.57 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=3.1
Q ss_pred HHhhhhe
Q 042958 771 LFFKFQR 777 (1075)
Q Consensus 771 ~~~~~~r 777 (1075)
++|++||
T Consensus 31 ~~~~~rr 37 (38)
T 2k1k_A 31 LVFRSRR 37 (38)
T ss_dssp HHHHHCC
T ss_pred HHHHeec
Confidence 3444444
No 458
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=41.75 E-value=8 Score=21.89 Aligned_cols=7 Identities=43% Similarity=1.645 Sum_probs=6.1
Q ss_pred CccceEE
Q 042958 37 CAWVGIH 43 (1075)
Q Consensus 37 c~w~gv~ 43 (1075)
|+|+|..
T Consensus 8 cswrgle 14 (23)
T 3ox7_P 8 CSWRGLE 14 (26)
T ss_pred cccccch
Confidence 9999975
No 459
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=34.73 E-value=7.3 Score=26.06 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.3
Q ss_pred HHhhhhee
Q 042958 771 LFFKFQRR 778 (1075)
Q Consensus 771 ~~~~~~r~ 778 (1075)
+.+++|||
T Consensus 27 ~~~~iRRr 34 (35)
T 1iij_A 27 VGILIKRR 34 (35)
T ss_dssp TTHHHHHC
T ss_pred hheEEeec
Confidence 33444443
No 460
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.96 E-value=28 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.966 Sum_probs=4.9
Q ss_pred EEEEEehhHHHH
Q 042958 750 IWVVVVFPLLGI 761 (1075)
Q Consensus 750 ~~~~i~~~~~~~ 761 (1075)
+|++++.+++|+
T Consensus 9 ~WiIi~svl~GL 20 (54)
T 2l8s_A 9 LWVILLSAFAGL 20 (54)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444333333
No 461
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.33 E-value=32 Score=24.45 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=14.6
Q ss_pred EEehhHHHHHHHHHHHHHHHhhhheecc
Q 042958 753 VVVFPLLGIVALLISLIGLFFKFQRRNN 780 (1075)
Q Consensus 753 ~i~~~~~~~~~~~~~~~~~~~~~~r~~~ 780 (1075)
.+++.++++++++++..+++-.++++++
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 3455555555555555555555555544
Done!