BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042962
         (377 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
 pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
 pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
 pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
          Length = 199

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 276 LFIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNPDNINNQWFHVSFYI 335
           + +GY   DE  +  P   +FK HG         LA  ++ L    + + N+W+  +  +
Sbjct: 71  IAVGYPAEDEKIIDEPLREVFKKHG---------LA-EDVRLFIEEETLPNEWYLDTISV 120

Query: 336 HSEYLNFSL-AKLVDGLLWIAHHAG 359
              +    + +KL+D L  +A  +G
Sbjct: 121 DERFRGMGIGSKLLDALPEVAKASG 145


>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
          Length = 392

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 80  VQLSDDVKFVSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSY 122
           + L+D     S  Y  L++ +E +  EL L FC    N+  +Y
Sbjct: 169 ITLNDXESVDSEYYNSLKWILENDPTELDLXFCIDEENFGQTY 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,639,050
Number of Sequences: 62578
Number of extensions: 473849
Number of successful extensions: 1110
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 6
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)