Query 042962
Match_columns 377
No_of_seqs 304 out of 2444
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.3 1.6E-13 3.4E-18 123.5 0.7 220 15-253 98-346 (419)
2 PLN00113 leucine-rich repeat r 99.1 8.9E-11 1.9E-15 127.6 9.0 164 102-273 93-273 (968)
3 PLN00113 leucine-rich repeat r 99.1 1.1E-10 2.5E-15 126.7 8.5 147 125-272 156-320 (968)
4 PLN03210 Resistant to P. syrin 98.9 1.2E-08 2.6E-13 112.4 12.7 87 126-213 627-715 (1153)
5 KOG4194 Membrane glycoprotein 98.8 3E-09 6.5E-14 103.9 4.0 168 127-296 96-284 (873)
6 KOG4341 F-box protein containi 98.7 7.6E-10 1.6E-14 104.1 -2.4 156 17-191 74-253 (483)
7 KOG4194 Membrane glycoprotein 98.7 3.2E-09 7E-14 103.7 -0.1 164 132-296 148-332 (873)
8 KOG0444 Cytoskeletal regulator 98.7 1.8E-09 3.9E-14 106.2 -2.4 218 121-347 137-400 (1255)
9 KOG0444 Cytoskeletal regulator 98.6 2.4E-09 5.3E-14 105.3 -2.6 173 121-295 91-282 (1255)
10 PLN03210 Resistant to P. syrin 98.5 3.7E-07 7.9E-12 100.8 9.7 106 179-287 777-910 (1153)
11 KOG0618 Serine/threonine phosp 98.4 2.2E-08 4.7E-13 102.6 -3.7 174 91-275 255-467 (1081)
12 KOG0617 Ras suppressor protein 98.3 1.2E-08 2.5E-13 85.6 -5.8 84 128-213 28-113 (264)
13 KOG3207 Beta-tubulin folding c 98.1 8.7E-07 1.9E-11 84.3 1.4 149 131-279 119-290 (505)
14 PRK15387 E3 ubiquitin-protein 98.1 1.3E-05 2.9E-10 83.8 10.2 140 121-275 212-357 (788)
15 PRK15387 E3 ubiquitin-protein 98.1 1.4E-05 3.1E-10 83.5 9.7 41 122-167 234-274 (788)
16 KOG2120 SCF ubiquitin ligase, 98.1 2.1E-07 4.5E-12 84.5 -3.4 166 96-268 153-346 (419)
17 PF14580 LRR_9: Leucine-rich r 98.1 1.6E-06 3.5E-11 74.5 2.1 99 131-230 40-147 (175)
18 PRK15370 E3 ubiquitin-protein 98.0 1E-05 2.3E-10 84.7 7.4 104 121-234 189-294 (754)
19 KOG0472 Leucine-rich repeat pr 98.0 1E-07 2.2E-12 89.6 -6.7 175 121-298 102-292 (565)
20 PF14580 LRR_9: Leucine-rich r 98.0 1.1E-06 2.3E-11 75.7 -0.5 101 130-234 16-124 (175)
21 cd00116 LRR_RI Leucine-rich re 98.0 1.2E-06 2.7E-11 82.7 -0.7 108 126-233 74-203 (319)
22 PRK15370 E3 ubiquitin-protein 97.9 1.1E-05 2.3E-10 84.7 5.1 102 122-233 211-314 (754)
23 cd00116 LRR_RI Leucine-rich re 97.9 1.6E-06 3.5E-11 81.8 -1.0 101 133-233 108-231 (319)
24 KOG0472 Leucine-rich repeat pr 97.9 4.1E-08 8.8E-13 92.3 -12.2 174 120-295 78-266 (565)
25 KOG3207 Beta-tubulin folding c 97.8 8.8E-06 1.9E-10 77.6 2.4 124 130-253 169-309 (505)
26 KOG0617 Ras suppressor protein 97.7 2.8E-06 6.1E-11 71.4 -2.6 137 121-275 44-188 (264)
27 KOG4237 Extracellular matrix p 97.4 2.8E-05 6.1E-10 73.4 -0.4 92 121-213 78-175 (498)
28 KOG1909 Ran GTPase-activating 97.2 0.00029 6.3E-09 65.6 3.7 169 152-322 89-310 (382)
29 KOG4341 F-box protein containi 97.1 4E-05 8.7E-10 72.8 -3.1 118 90-213 127-253 (483)
30 COG4886 Leucine-rich repeat (L 97.0 0.00057 1.2E-08 66.8 4.2 158 130-290 113-286 (394)
31 PF13855 LRR_8: Leucine rich r 97.0 0.00019 4E-09 50.4 0.6 56 134-190 2-59 (61)
32 PF12937 F-box-like: F-box-lik 97.0 0.00049 1.1E-08 45.5 2.0 21 15-35 1-21 (47)
33 KOG0618 Serine/threonine phosp 96.9 0.00018 3.9E-09 74.7 -0.8 148 122-280 80-229 (1081)
34 KOG4237 Extracellular matrix p 96.9 0.00064 1.4E-08 64.4 2.9 19 256-274 270-288 (498)
35 PLN03150 hypothetical protein; 96.8 0.0014 3.1E-08 67.9 4.8 78 135-213 420-501 (623)
36 KOG3665 ZYG-1-like serine/thre 96.7 0.0005 1.1E-08 71.6 1.0 102 132-233 121-230 (699)
37 KOG1259 Nischarin, modulator o 96.7 0.00032 6.9E-09 64.3 -0.5 21 124-144 205-225 (490)
38 COG4886 Leucine-rich repeat (L 96.6 0.0012 2.6E-08 64.4 2.6 175 137-321 97-288 (394)
39 KOG1947 Leucine rich repeat pr 96.6 0.00065 1.4E-08 67.7 0.5 102 129-230 210-328 (482)
40 PF13855 LRR_8: Leucine rich r 96.6 0.00051 1.1E-08 48.1 -0.3 57 155-212 1-59 (61)
41 PLN03150 hypothetical protein; 96.5 0.0023 5.1E-08 66.3 4.0 67 124-191 433-501 (623)
42 KOG1859 Leucine-rich repeat pr 96.5 0.00074 1.6E-08 68.6 0.3 189 71-271 55-290 (1096)
43 KOG1947 Leucine rich repeat pr 96.4 0.00049 1.1E-08 68.6 -1.9 122 131-252 186-328 (482)
44 KOG1259 Nischarin, modulator o 96.3 0.00082 1.8E-08 61.6 -0.5 65 123-189 172-246 (490)
45 PF07723 LRR_2: Leucine Rich R 96.1 0.0064 1.4E-07 34.7 2.6 25 156-180 1-26 (26)
46 PF12799 LRR_4: Leucine Rich r 96.0 0.0045 9.7E-08 40.3 2.0 35 133-167 1-36 (44)
47 KOG3665 ZYG-1-like serine/thre 95.8 0.0069 1.5E-07 63.3 3.4 170 134-304 61-263 (699)
48 KOG0531 Protein phosphatase 1, 95.8 0.0017 3.8E-08 63.9 -0.9 101 130-233 92-196 (414)
49 KOG1644 U2-associated snRNP A' 95.3 0.023 4.9E-07 49.5 4.1 97 133-232 42-149 (233)
50 PF00646 F-box: F-box domain; 95.2 0.005 1.1E-07 40.6 -0.2 21 15-35 3-23 (48)
51 KOG2739 Leucine-rich acidic nu 95.1 0.0053 1.1E-07 55.3 -0.3 102 131-232 41-152 (260)
52 KOG2982 Uncharacterized conser 95.0 0.012 2.6E-07 54.1 1.8 104 129-233 41-156 (418)
53 KOG0532 Leucine-rich repeat (L 94.9 0.0029 6.2E-08 62.8 -2.6 150 137-291 79-244 (722)
54 PRK15386 type III secretion pr 94.9 0.068 1.5E-06 52.1 6.6 11 181-191 95-105 (426)
55 KOG1909 Ran GTPase-activating 94.6 0.0089 1.9E-07 56.0 -0.1 132 130-272 154-310 (382)
56 KOG0532 Leucine-rich repeat (L 94.4 0.00095 2.1E-08 66.1 -7.3 126 124-252 112-241 (722)
57 PF12799 LRR_4: Leucine Rich r 94.2 0.017 3.6E-07 37.6 0.5 35 155-191 1-35 (44)
58 smart00256 FBOX A Receptor for 94.1 0.04 8.6E-07 34.6 2.1 22 18-39 1-31 (41)
59 KOG1644 U2-associated snRNP A' 94.0 0.056 1.2E-06 47.1 3.4 83 130-213 61-151 (233)
60 KOG0531 Protein phosphatase 1, 93.6 0.0097 2.1E-07 58.7 -2.2 121 130-253 69-194 (414)
61 KOG2739 Leucine-rich acidic nu 93.5 0.029 6.4E-07 50.6 0.9 57 179-235 42-103 (260)
62 KOG2982 Uncharacterized conser 93.4 0.12 2.5E-06 47.9 4.6 125 102-233 71-209 (418)
63 KOG1859 Leucine-rich repeat pr 93.4 0.0026 5.6E-08 64.8 -6.5 36 132-167 83-121 (1096)
64 KOG4658 Apoptotic ATPase [Sign 93.4 0.028 6.1E-07 60.4 0.7 58 132-190 544-605 (889)
65 PRK15386 type III secretion pr 92.5 0.32 7E-06 47.5 6.4 70 154-232 51-121 (426)
66 PF13306 LRR_5: Leucine rich r 92.1 0.13 2.7E-06 41.3 2.8 80 130-211 9-90 (129)
67 KOG2123 Uncharacterized conser 91.9 0.0065 1.4E-07 55.3 -5.5 58 131-189 39-97 (388)
68 KOG4658 Apoptotic ATPase [Sign 91.5 0.28 6E-06 52.9 5.3 157 89-253 487-650 (889)
69 KOG2123 Uncharacterized conser 89.6 0.038 8.2E-07 50.5 -2.7 35 131-165 61-98 (388)
70 PF13306 LRR_5: Leucine rich r 88.8 0.46 9.9E-06 38.0 3.3 13 151-163 8-20 (129)
71 KOG3864 Uncharacterized conser 88.8 0.15 3.2E-06 44.5 0.4 43 151-193 121-164 (221)
72 KOG3864 Uncharacterized conser 87.5 0.12 2.6E-06 45.1 -0.9 74 157-232 103-185 (221)
73 PF00560 LRR_1: Leucine Rich R 83.5 0.68 1.5E-05 24.9 1.2 13 134-146 1-13 (22)
74 COG5238 RNA1 Ran GTPase-activa 82.5 0.49 1.1E-05 43.3 0.6 85 129-213 26-131 (388)
75 PF13516 LRR_6: Leucine Rich r 81.7 1.2 2.6E-05 24.4 1.7 20 155-174 2-21 (24)
76 KOG4579 Leucine-rich repeat (L 80.2 0.42 9E-06 39.4 -0.7 55 134-190 54-110 (177)
77 COG5238 RNA1 Ran GTPase-activa 80.1 1.5 3.3E-05 40.3 2.8 87 73-167 32-132 (388)
78 smart00367 LRR_CC Leucine-rich 80.0 0.86 1.9E-05 25.6 0.8 16 179-194 1-16 (26)
79 PF13504 LRR_7: Leucine rich r 71.9 3.2 6.9E-05 20.8 1.5 14 261-274 2-15 (17)
80 KOG4579 Leucine-rich repeat (L 68.7 1.4 3.1E-05 36.4 -0.3 60 102-167 51-112 (177)
81 smart00368 LRR_RI Leucine rich 59.1 11 0.00023 21.6 2.3 21 155-175 2-22 (28)
82 PF09372 PRANC: PRANC domain; 52.4 11 0.00024 28.8 2.1 23 13-35 70-92 (97)
83 PF13013 F-box-like_2: F-box-l 46.5 13 0.00028 29.2 1.7 22 14-35 21-42 (109)
84 smart00369 LRR_TYP Leucine-ric 39.9 22 0.00047 19.6 1.5 17 260-276 2-18 (26)
85 smart00370 LRR Leucine-rich re 39.9 22 0.00047 19.6 1.5 17 260-276 2-18 (26)
86 PLN03215 ascorbic acid mannose 39.7 21 0.00046 34.5 2.3 26 14-39 3-38 (373)
87 KOG0281 Beta-TrCP (transducin 38.0 14 0.0003 35.1 0.7 25 11-35 71-99 (499)
88 smart00365 LRR_SD22 Leucine-ri 34.7 38 0.00083 19.1 1.9 16 260-275 2-17 (26)
89 KOG3763 mRNA export factor TAP 34.1 20 0.00044 36.2 1.2 77 152-229 215-307 (585)
90 PF02061 Lambda_CIII: Lambda P 32.9 20 0.00043 22.5 0.6 24 15-40 13-36 (45)
91 KOG2997 F-box protein FBX9 [Ge 28.9 32 0.00069 32.4 1.5 18 13-30 105-122 (366)
92 PF09151 DUF1936: Domain of un 24.7 51 0.0011 19.4 1.3 14 360-373 22-35 (36)
93 smart00364 LRR_BAC Leucine-ric 24.4 41 0.00089 19.1 0.9 15 261-275 3-17 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-13 Score=123.49 Aligned_cols=220 Identities=16% Similarity=0.197 Sum_probs=144.1
Q ss_pred CCCCcHHHHHHHhhcCChhHH---------hhcCCC-CCcCCcccCCCChh-hHHHHHHHHhhcCCCcCceEEEEEEecc
Q 042962 15 ISALLAPILHHILSFLSIEQV---------WHSHPG-VECNGSLSMSPENT-LKCLVKTLLNHYGDDFSLEKFTFIVQLS 83 (377)
Q Consensus 15 iS~LPD~lL~~ILs~Lp~~da---------Wr~l~~-~~~~~~l~~~~~~~-~~~v~~~L~~~~~~~~~i~~l~l~~~~~ 83 (377)
+..|||||+..|||-|+.||. |.++-. -..|.+++...+.- .+...+.+ .+| +..|++--..-
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~--~rg----V~v~Rlar~~~ 171 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLL--SRG----VIVFRLARSFM 171 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHH--hCC----eEEEEcchhhh
Confidence 678999999999999999998 776622 22466666554422 44444444 233 66666643221
Q ss_pred CCccchhhHHHHHHHH--HhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCC--CCCCCCCCCCe
Q 042962 84 DDVKFVSSIYRCLRYA--VETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESP--RGNVTLSCLRE 159 (377)
Q Consensus 84 ~~~~~~~~i~~wi~~a--~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p--~~~~~l~~L~~ 159 (377)
++ + +...++ .+.+++.++|.... .....+...+..|..|+.|.|.|..++.| ..++.-.+|+.
T Consensus 172 ~~----p---rlae~~~~frsRlq~lDLS~s~------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 172 DQ----P---RLAEHFSPFRSRLQHLDLSNSV------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred cC----c---hhhhhhhhhhhhhHHhhcchhh------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 11 1 223333 23458888886432 12223333455799999999999988654 35667789999
Q ss_pred eecccee-eChHHHHHHhcCCccccccccccccccee---eccCC-CCCCcEEEEcccC------CCchhhhcCCcccEE
Q 042962 160 LRPRHVC-ADDQVIKDLISGCPLIEFISIISCRGLKH---LELPN-LGKLKEFKVYDEY------GLEQVYIQGMNAHSV 228 (377)
Q Consensus 160 L~L~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~~l~~---l~i~~-l~~L~~L~i~~~~------~~~~~~~~~p~L~~L 228 (377)
|+|+.+. ++...++-++++|..|.+|+|+.|.-... ..+++ -++|+.|.+++|. .+..+.-.+|+|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 9999984 58888999999999999999999953322 11211 2899999999997 233445568999999
Q ss_pred EEeccccCCc---eeeccCCCccccchh
Q 042962 229 HIIGLHMLPH---ISVVPCKNLKKLKLC 253 (377)
Q Consensus 229 ~l~g~~~~~~---~~~~~~~~L~~L~L~ 253 (377)
+++++++..+ ..+...+.|++|.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehh
Confidence 9987753221 113344555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=8.9e-11 Score=127.58 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=99.6
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCcccc-ccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVF-YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCP 180 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp 180 (377)
..++.|++.... -...+|..++ .+++|++|+|++|.+........+++|++|+|++|.+.+..+.. +++++
T Consensus 93 ~~L~~L~Ls~n~-------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNNQ-------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFS 164 (968)
T ss_pred CCCCEEECCCCc-------cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCC
Confidence 567777765211 1125777666 77888888888887642222345778888888888775433333 56778
Q ss_pred cccccccccccc--ceeeccCCCCCCcEEEEcccC---CCchhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh
Q 042962 181 LIEFISIISCRG--LKHLELPNLGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 181 ~Le~L~L~~c~~--l~~l~i~~l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~ 253 (377)
+|+.|++++|.- ..+-.+..+++|+.|++.+|. ..+.....+++|+.|.++++. +..+..++++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 888888877632 222234446777777777776 122222345677777775553 3344456667777777665
Q ss_pred ---------hhccCCCCCceEeccCCccc
Q 042962 254 ---------QEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 254 ---------~~l~~~~~L~~L~i~~~~L~ 273 (377)
..++++++|+.|+++.|.+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeee
Confidence 23566667777777665543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.12 E-value=1.1e-10 Score=126.71 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCccccccCcccEEEeccccc--cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccc--ceeeccCC
Q 042962 125 LPQLVFYAKSMSLLGLDSCKL--ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRG--LKHLELPN 200 (377)
Q Consensus 125 lp~~l~~~~~L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~--l~~l~i~~ 200 (377)
+|..+..+++|++|+|++|.+ ..|..+.++++|++|+|.+|.+.+..+.. ++++++|+.|.++++.- ..+-.+..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhc
Confidence 444455555555555555543 22334455555555555555543322222 34455555555554421 11112233
Q ss_pred CCCCcEEEEcccC---CCchhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh---------hhccCCCCCceEe
Q 042962 201 LGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIK 266 (377)
Q Consensus 201 l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~ 266 (377)
+++|+.|++.+|. ..+.....+++|++|.++++. +..+..+.++.+|++|+++ ..+.++++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 4555555555554 112222334555555554432 2233334444555555544 1234445555555
Q ss_pred ccCCcc
Q 042962 267 ISSFCL 272 (377)
Q Consensus 267 i~~~~L 272 (377)
+++|.+
T Consensus 315 l~~n~~ 320 (968)
T PLN00113 315 LFSNNF 320 (968)
T ss_pred CCCCcc
Confidence 554443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.89 E-value=1.2e-08 Score=112.37 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=39.7
Q ss_pred CccccccCcccEEEecccc-ccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccC-CCCC
Q 042962 126 PQLVFYAKSMSLLGLDSCK-LESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELP-NLGK 203 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~-~l~~ 203 (377)
|..+..+++|+.|+|++|. +...+.+..+++|++|+|.+|..-... ..-+.++++|+.|++++|..++.+... ++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l-p~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL-PSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc-chhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 3333344555555555443 222223444555555555554321111 112345555666666655544433321 2455
Q ss_pred CcEEEEcccC
Q 042962 204 LKEFKVYDEY 213 (377)
Q Consensus 204 L~~L~i~~~~ 213 (377)
|+.|.+.+|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 6666666554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=3e-09 Score=103.89 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=95.9
Q ss_pred ccccccCcccEEEeccccccCCCCCCC-CCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCC
Q 042962 127 QLVFYAKSMSLLGLDSCKLESPRGNVT-LSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGK 203 (377)
Q Consensus 127 ~~l~~~~~L~~L~L~~~~~~~p~~~~~-l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~ 203 (377)
..+++.++|+.+++..|.+..-|.++. ...|+.|.|.+|.++.-.-+. ++..|.||.|+|+... .+..-....-.+
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 345677888888888887743334444 344888888888763222222 4556788888887652 222112221256
Q ss_pred CcEEEEcccCCCchhh----hcCCcccEEEEeccc-cC-CceeeccCCCccccchh---------hhccCCCCCceEecc
Q 042962 204 LKEFKVYDEYGLEQVY----IQGMNAHSVHIIGLH-ML-PHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKIS 268 (377)
Q Consensus 204 L~~L~i~~~~~~~~~~----~~~p~L~~L~l~g~~-~~-~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~ 268 (377)
+++|.+.++. +..+. -...+|..|+++.+. .. .+..+.+++.|+.|+|. ..+.++++|+.|.+.
T Consensus 175 i~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 175 IKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred ceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 7788877776 11111 112366667775553 22 22235566777777665 234566677777666
Q ss_pred CCccceEE---ccCcccccccccccCCcceE
Q 042962 269 SFCLKSFL---FIGYDTLDELKLCTPNLSIF 296 (377)
Q Consensus 269 ~~~L~~l~---l~~c~~L~~l~l~~~~L~~~ 296 (377)
.|.+..|+ +.+|.+++.+.+..++++..
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhh
Confidence 66655553 44566666666666665543
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=7.6e-10 Score=104.09 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCcHHHHHHHhhcCChhHH---------hhcCCCC-CcCCcccCCCC---hhhHHHHHHHHhhcCCCcCceEEEEEEecc
Q 042962 17 ALLAPILHHILSFLSIEQV---------WHSHPGV-ECNGSLSMSPE---NTLKCLVKTLLNHYGDDFSLEKFTFIVQLS 83 (377)
Q Consensus 17 ~LPD~lL~~ILs~Lp~~da---------Wr~l~~~-~~~~~l~~~~~---~~~~~v~~~L~~~~~~~~~i~~l~l~~~~~ 83 (377)
.||.|++.+|+|+|+++.. |..+--- ..|.+.+.... .+...|...+ .++|+ .+++++++.+..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~-~Rcgg--~lk~LSlrG~r~ 150 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMI-SRCGG--FLKELSLRGCRA 150 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHh-hhhcc--cccccccccccc
Confidence 5999999999999999887 5544100 02333332211 1144455555 44443 599999988753
Q ss_pred CCccchhhHHHHHHHHH-hCCceEEEEEeeCCCCCCCCCCcCCCcc-----ccccCcccEEEeccccccCC----CCCCC
Q 042962 84 DDVKFVSSIYRCLRYAV-ETNVKELKLGFCCPHSNYPDSYYNLPQL-----VFYAKSMSLLGLDSCKLESP----RGNVT 153 (377)
Q Consensus 84 ~~~~~~~~i~~wi~~a~-~~~v~~L~L~~~~~~~~~~~~~~~lp~~-----l~~~~~L~~L~L~~~~~~~p----~~~~~ 153 (377)
..+. ..-.++. .+++++|.+... +.+... -..|+.|++|+|..|...+- .-..+
T Consensus 151 v~~s------slrt~~~~CpnIehL~l~gc----------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 151 VGDS------SLRTFASNCPNIEHLALYGC----------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred CCcc------hhhHHhhhCCchhhhhhhcc----------eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 3221 1122222 367777766432 222221 12577777777777642110 01246
Q ss_pred CCCCCeeecccee-eChHHHHHHhcCCcccccccccccc
Q 042962 154 LSCLRELRPRHVC-ADDQVIKDLISGCPLIEFISIISCR 191 (377)
Q Consensus 154 l~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~ 191 (377)
+++|++|+++++. +.+..++.+..+|..++.+.+++|.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 7777777777773 3556666666677777776666663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.68 E-value=3.2e-09 Score=103.66 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=85.1
Q ss_pred cCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEE
Q 042962 132 AKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEF 207 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L 207 (377)
.+.|++|+|+.|.+. +| +.+..=.++++|+|.+|.++.-.... +++..+|-.|.|++.. .+.......+|+|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 344455555544431 11 12222234555555555542211111 3344455555555442 1111111224566666
Q ss_pred EEcccC--CCch-hhhcCCcccEEEEeccc--cCCceeeccCCCccccchh---------hhccCCCCCceEeccCCccc
Q 042962 208 KVYDEY--GLEQ-VYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 208 ~i~~~~--~~~~-~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~ 273 (377)
++..+. .... .....|+|+.|.+..+. ..-.--+-.|.++++|+|+ +.+-+++.|+.|+++.|.++
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 665554 1111 11234566666653321 1111115567778888776 45677888888899888888
Q ss_pred eEEcc---CcccccccccccCCcceE
Q 042962 274 SFLFI---GYDTLDELKLCTPNLSIF 296 (377)
Q Consensus 274 ~l~l~---~c~~L~~l~l~~~~L~~~ 296 (377)
.+++. .|.+|++++++.+++..+
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred eeecchhhhcccceeEeccccccccC
Confidence 87654 456888888888877655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.66 E-value=1.8e-09 Score=106.17 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=123.7
Q ss_pred CCcCCCcccc-ccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc-ccee--
Q 042962 121 SYYNLPQLVF-YAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR-GLKH-- 195 (377)
Q Consensus 121 ~~~~lp~~l~-~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~l~~-- 195 (377)
....+|..++ ++..|-.|+|++|++ ..||...++..|++|.|++|.+..--+.. +.+.++|+.|.+++-. .+..
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCC
Confidence 5567777665 667777888888887 45667778888899999888663333333 4456677777777542 2221
Q ss_pred eccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------------------
Q 042962 196 LELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC------------------- 253 (377)
Q Consensus 196 l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~------------------- 253 (377)
-.+.++.+|..++++.+. ..+......++|+.|+++|+. .......+...+|+.|+++
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence 223345677777777665 334444556778888877763 2222223334445555544
Q ss_pred --------------hhccCCCCCceEeccCCccceE--EccCcccccccccccCCcceEEEcccccccCcc-ccccceEE
Q 042962 254 --------------QEIVDCMKLRSIKISSFCLKSF--LFIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIA 316 (377)
Q Consensus 254 --------------~~l~~~~~L~~L~i~~~~L~~l--~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~ 316 (377)
..|+++.+|+.+..++|.|+-. .+..|.+|+.+.++.+.|.. +|..+- .+.|+.|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-------LPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-------LPEAIHLLPDLKVLD 368 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-------chhhhhhcCCcceee
Confidence 1234444555555555555433 24445566666666665533 343332 24688899
Q ss_pred EEecCCCCCCceeeeec--ccchhHHHhhHHHH
Q 042962 317 LVFNPDNINNQWFHVSF--YIHSEYLNFSLAKL 347 (377)
Q Consensus 317 l~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 347 (377)
+..|+..--..- |+.. ....-.+.||||+.
T Consensus 369 lreNpnLVMPPK-P~da~~~lefYNIDFSLq~Q 400 (1255)
T KOG0444|consen 369 LRENPNLVMPPK-PNDARKKLEFYNIDFSLQHQ 400 (1255)
T ss_pred ccCCcCccCCCC-cchhhhcceeeecceehhhH
Confidence 998877432100 0111 11111367888887
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=2.4e-09 Score=105.27 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc-cceeecc
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR-GLKHLEL 198 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~l~~l~i 198 (377)
....+|..+|.++.|+.|+|++|.+ ..|..+..-+++-.|+|++|+++ .++..++.+.+-|-.|+|+... ...+..+
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 3567899999999999999999988 45666777789999999999883 2334556677778888888763 1122233
Q ss_pred CCCCCCcEEEEcccCC----CchhhhcCCcccEEEEeccc---cCCceeeccCCCccccchh--------hhccCCCCCc
Q 042962 199 PNLGKLKEFKVYDEYG----LEQVYIQGMNAHSVHIIGLH---MLPHISVVPCKNLKKLKLC--------QEIVDCMKLR 263 (377)
Q Consensus 199 ~~l~~L~~L~i~~~~~----~~~~~~~~p~L~~L~l~g~~---~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~ 263 (377)
..+..|++|.++++.- +..+ -.+.+|+.|++++.. ..+|.++..+.||..++++ .-+-++++|.
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 3457888999988861 1111 123456666776654 4467778888888888887 2346678888
Q ss_pred eEeccCCccceEEcc--CcccccccccccCCcce
Q 042962 264 SIKISSFCLKSFLFI--GYDTLDELKLCTPNLSI 295 (377)
Q Consensus 264 ~L~i~~~~L~~l~l~--~c~~L~~l~l~~~~L~~ 295 (377)
+|++++|+++.|.+. ...+|+.++++-+.|..
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence 889988888876543 23456666665555443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=3.7e-07 Score=100.83 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=54.5
Q ss_pred Ccccccccccccccceee--ccCCCCCCcEEEEcccCCCchh--hhcCCcccEEEEeccc--cCCceeeccCCCccccch
Q 042962 179 CPLIEFISIISCRGLKHL--ELPNLGKLKEFKVYDEYGLEQV--YIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKL 252 (377)
Q Consensus 179 cp~Le~L~L~~c~~l~~l--~i~~l~~L~~L~i~~~~~~~~~--~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L 252 (377)
+++|+.|.+++|..+..+ .+.++++|+.|.+.+|..+..+ .+..++|++|+++|+. ..++. ...+|+.|+|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeEC
Confidence 345666666666433322 2345677888888777622221 1245677777776653 11111 1234555555
Q ss_pred h--------hhccCCCCCceEeccC--------------CccceEEccCcccccccc
Q 042962 253 C--------QEIVDCMKLRSIKISS--------------FCLKSFLFIGYDTLDELK 287 (377)
Q Consensus 253 ~--------~~l~~~~~L~~L~i~~--------------~~L~~l~l~~c~~L~~l~ 287 (377)
+ ..+.++++|+.|++++ ..|+.+.+.+|.+|+.+.
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 4 1234444555554443 124455677777766543
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=2.2e-08 Score=102.63 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeC-
Q 042962 91 SIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCAD- 168 (377)
Q Consensus 91 ~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~- 168 (377)
.+..|+..++ +++.+.... .....+|..++...+|+.|....|.+ ..|+...++++|++|+|..|.+.
T Consensus 255 ~lp~wi~~~~--nle~l~~n~--------N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 255 NLPEWIGACA--NLEALNANH--------NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred cchHHHHhcc--cceEecccc--------hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 4447777664 566666542 23467777788888888888888876 35566777999999999999772
Q ss_pred --hHHHHHH------h-c--------------CCcccccccccccc---cceeeccCCCCCCcEEEEcccC--CCchh-h
Q 042962 169 --DQVIKDL------I-S--------------GCPLIEFISIISCR---GLKHLELPNLGKLKEFKVYDEY--GLEQV-Y 219 (377)
Q Consensus 169 --~~~l~~l------~-~--------------~cp~Le~L~L~~c~---~l~~l~i~~l~~L~~L~i~~~~--~~~~~-~ 219 (377)
+..+..+ + . ..+.|+.|.+.+.. ...++ +.++++||.|.++.++ .++.. .
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHH
Confidence 2111100 0 0 12223333333221 01111 1123566666666664 22222 2
Q ss_pred hcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccceE
Q 042962 220 IQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKSF 275 (377)
Q Consensus 220 ~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~l 275 (377)
...+.|+.|.++|+. ..++..+.+|..|+.|... .++..++.|+.++++.|+|+..
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhh
Confidence 234556666666654 3344445555555555443 3345556666666666665543
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.32 E-value=1.2e-08 Score=85.58 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=47.5
Q ss_pred cccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc-cceeeccCCCCCCc
Q 042962 128 LVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR-GLKHLELPNLGKLK 205 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~l~~l~i~~l~~L~ 205 (377)
.++.....+.|.|++|.+ ..|+.++.+.+|+.|++.++++ +.+..-++..|.|+.|++.-.. ...+-...++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 345667777777777776 3456677777777777777766 2233335666666666665321 01111122345555
Q ss_pred EEEEcccC
Q 042962 206 EFKVYDEY 213 (377)
Q Consensus 206 ~L~i~~~~ 213 (377)
.|++..+.
T Consensus 106 vldltynn 113 (264)
T KOG0617|consen 106 VLDLTYNN 113 (264)
T ss_pred hhhccccc
Confidence 55554443
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.7e-07 Score=84.26 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=91.8
Q ss_pred ccCcccEEEeccccccCCC---CCCCCCCCCeeeccceee-ChHHHHHHhcCCccccccccccccc---ceeeccCCCCC
Q 042962 131 YAKSMSLLGLDSCKLESPR---GNVTLSCLRELRPRHVCA-DDQVIKDLISGCPLIEFISIISCRG---LKHLELPNLGK 203 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~L~~c~~---l~~l~i~~l~~ 203 (377)
+.++|+...|.++....+. ....|++++.|+|++|-+ .=..+..++...|+||.|+|+...- ........++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567777788877765443 355788888888888866 3345556677888888888886521 11111112578
Q ss_pred CcEEEEcccC----CCchhhhcCCcccEEEEecccc--CCceeeccCCCccccchh----------hhccCCCCCceEec
Q 042962 204 LKEFKVYDEY----GLEQVYIQGMNAHSVHIIGLHM--LPHISVVPCKNLKKLKLC----------QEIVDCMKLRSIKI 267 (377)
Q Consensus 204 L~~L~i~~~~----~~~~~~~~~p~L~~L~l~g~~~--~~~~~~~~~~~L~~L~L~----------~~l~~~~~L~~L~i 267 (377)
||.|.+.+|. .+..+...+|+|+.|.+.++.. ...........|+.|+|+ ..++.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8888888887 3445556778888888866631 111112233446666665 12356677777777
Q ss_pred cCCccceEEccC
Q 042962 268 SSFCLKSFLFIG 279 (377)
Q Consensus 268 ~~~~L~~l~l~~ 279 (377)
+.+.+..+.+-.
T Consensus 279 s~tgi~si~~~d 290 (505)
T KOG3207|consen 279 SSTGIASIAEPD 290 (505)
T ss_pred cccCcchhcCCC
Confidence 666655544333
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.12 E-value=1.3e-05 Score=83.77 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCC
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPN 200 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~ 200 (377)
....+|..+. ++|+.|.+.+|.+...+. ..++|++|+|++|.++. +. ...++|+.|++..+. +..+.-.
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~Lp~l- 280 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHLPAL- 280 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhhhhc-
Confidence 4456887764 478999999888743222 35789999999997742 22 124688888888763 3322222
Q ss_pred CCCCcEEEEcccCCCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-hhccCC----CCCceEeccCCccce
Q 042962 201 LGKLKEFKVYDEYGLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-QEIVDC----MKLRSIKISSFCLKS 274 (377)
Q Consensus 201 l~~L~~L~i~~~~~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-~~l~~~----~~L~~L~i~~~~L~~ 274 (377)
.++|+.|.+.+|. +..+....|+|+.|+++++. ..++.. -.+|+.|+++ ..+..+ .+|+.|++++|+|+.
T Consensus 281 p~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 281 PSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred hhhcCEEECcCCc-cccccccccccceeECCCCccccCCCC---cccccccccccCccccccccccccceEecCCCccCC
Confidence 2577888887775 22222234678888887663 222211 1234444444 122222 256677777666654
Q ss_pred E
Q 042962 275 F 275 (377)
Q Consensus 275 l 275 (377)
+
T Consensus 357 L 357 (788)
T PRK15387 357 L 357 (788)
T ss_pred C
Confidence 3
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.09 E-value=1.4e-05 Score=83.53 Aligned_cols=41 Identities=22% Similarity=0.102 Sum_probs=26.7
Q ss_pred CcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceee
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~ 167 (377)
...+|.. .++|++|+|++|.+...+. ..++|+.|++.+|.+
T Consensus 234 Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 234 LTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCch
Confidence 3456643 5789999999987743222 235777777777765
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.1e-07 Score=84.48 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=109.9
Q ss_pred HHHHHhCCceEEEEEeeCCCCCCCCCCcCCCcccc-ccCcccEEEeccccccCC---CCCCCCCCCCeeeccceeeChHH
Q 042962 96 LRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVF-YAKSMSLLGLDSCKLESP---RGNVTLSCLRELRPRHVCADDQV 171 (377)
Q Consensus 96 i~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~~ 171 (377)
+....++||..+.+.-..- ..-.+.+... .-+.|++|+|+.-.+... .-+..+..||.|+|.++++++..
T Consensus 153 l~~l~~rgV~v~Rlar~~~------~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I 226 (419)
T KOG2120|consen 153 LGRLLSRGVIVFRLARSFM------DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI 226 (419)
T ss_pred HHHHHhCCeEEEEcchhhh------cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH
Confidence 4455678998887752110 0011111111 124599999997554321 12356889999999999998876
Q ss_pred HHHHhcCCcccccccccccccceee----ccCCCCCCcEEEEcccCCCc---hhhh--cCCcccEEEEeccccCCc----
Q 042962 172 IKDLISGCPLIEFISIISCRGLKHL----ELPNLGKLKEFKVYDEYGLE---QVYI--QGMNAHSVHIIGLHMLPH---- 238 (377)
Q Consensus 172 l~~l~~~cp~Le~L~L~~c~~l~~l----~i~~l~~L~~L~i~~~~~~~---~~~~--~~p~L~~L~l~g~~~~~~---- 238 (377)
... ++.-.+|+.|+|+.|.|++.. -+++|..|..|.++-|.... .+.+ -.++|..|+++|+...+.
T Consensus 227 ~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~ 305 (419)
T KOG2120|consen 227 VNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL 305 (419)
T ss_pred HHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH
Confidence 666 677789999999999988653 34468999999999998211 1111 247899999998752221
Q ss_pred -eeeccCCCccccchh----------hhccCCCCCceEecc
Q 042962 239 -ISVVPCKNLKKLKLC----------QEIVDCMKLRSIKIS 268 (377)
Q Consensus 239 -~~~~~~~~L~~L~L~----------~~l~~~~~L~~L~i~ 268 (377)
.-...|++|..|+|+ +.+.+++.|+.|+++
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 115678888888887 445666777777665
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=1.6e-06 Score=74.50 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=40.0
Q ss_pred ccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc--ccceee-ccCCCCCCcEE
Q 042962 131 YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC--RGLKHL-ELPNLGKLKEF 207 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c--~~l~~l-~i~~l~~L~~L 207 (377)
.+.+|+.|+|++|.+..-..+..++.|++|++++|.++.-. +.+..+||+|++|.+++. ..+..+ .+..+++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 46788888888888755556777888888888888883210 122345888888888865 222222 33346788888
Q ss_pred EEcccC-----C-CchhhhcCCcccEEEE
Q 042962 208 KVYDEY-----G-LEQVYIQGMNAHSVHI 230 (377)
Q Consensus 208 ~i~~~~-----~-~~~~~~~~p~L~~L~l 230 (377)
++.++. . ...+...+|+|+.|+.
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCC
Confidence 887776 0 1123345677766654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.03 E-value=1e-05 Score=84.68 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccC
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELP 199 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~ 199 (377)
....+|..+ .++|+.|+|++|.+. .|... +++|++|++++|.+.. +..-+ .+.|+.|.|++|. +..+...
T Consensus 189 ~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~-L~~LP~~ 259 (754)
T PRK15370 189 GLTTIPACI--PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINR-ITELPER 259 (754)
T ss_pred CcCcCCccc--ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEEECcCCc-cCcCChh
Confidence 345567654 357888999888764 33322 3588899888887741 11111 2467888887764 2222211
Q ss_pred CCCCCcEEEEcccCCCchhhhc-CCcccEEEEeccc
Q 042962 200 NLGKLKEFKVYDEYGLEQVYIQ-GMNAHSVHIIGLH 234 (377)
Q Consensus 200 ~l~~L~~L~i~~~~~~~~~~~~-~p~L~~L~l~g~~ 234 (377)
-..+|+.|.++++. +..+... .++|+.|+++++.
T Consensus 260 l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~ 294 (754)
T PRK15370 260 LPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNS 294 (754)
T ss_pred HhCCCCEEECcCCc-cCccccccCCCCcEEECCCCc
Confidence 12467777777665 1111111 2467777776653
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.02 E-value=1e-07 Score=89.59 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=103.2
Q ss_pred CCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeec
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLE 197 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~ 197 (377)
....+|..+++..+|+.|+.+++.+ ..|++++.+-.|..|+..+|++. .+..-+.+|.+|..|.+.+.. .+..-.
T Consensus 102 ~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~ 179 (565)
T KOG0472|consen 102 KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENH 179 (565)
T ss_pred hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHH
Confidence 4556777777777777777777665 34556666667777777766651 122224456666666665542 222223
Q ss_pred cCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh---------hhccCCCCCceEe
Q 042962 198 LPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIK 266 (377)
Q Consensus 198 i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~ 266 (377)
+. +.+|++|+...+. .++.-.....+|+.|.+..+.-.+-.++++|..|+.|++. ....+++++..|+
T Consensus 180 i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 180 IA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 33 4566666554443 1111112234444455544433333368888888888776 2235788888899
Q ss_pred ccCCccceEEccC--cccccccccccCCcceEEE
Q 042962 267 ISSFCLKSFLFIG--YDTLDELKLCTPNLSIFKY 298 (377)
Q Consensus 267 i~~~~L~~l~l~~--c~~L~~l~l~~~~L~~~~~ 298 (377)
+..|+++.+.-.. ..+|+.++++.+.+.+++|
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 9999998764333 3578888887777655544
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.00 E-value=1.1e-06 Score=75.66 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=31.5
Q ss_pred cccCcccEEEeccccccCCCCCC-CCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--ccee-eccCCCCCCc
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNV-TLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKH-LELPNLGKLK 205 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~-l~i~~l~~L~ 205 (377)
-++..++.|+|.++.+......+ .+.+|+.|+|++|.+. .++. +..++.|++|.+++.. .+.. +. .++|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~--~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~-~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT--KLEG-LPGLPRLKTLDLSNNRISSISEGLD-KNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHH-HH-TT--
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCc--cccC-ccChhhhhhcccCCCCCCccccchH-HhCCcCC
Confidence 35667899999999875444554 5789999999999883 2333 5567888888888663 2211 11 1368888
Q ss_pred EEEEcccC--CCchh--hhcCCcccEEEEeccc
Q 042962 206 EFKVYDEY--GLEQV--YIQGMNAHSVHIIGLH 234 (377)
Q Consensus 206 ~L~i~~~~--~~~~~--~~~~p~L~~L~l~g~~ 234 (377)
.|.+.++. .+..+ -..+|+|+.|.+.|+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 88888876 22221 1257888888887764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.97 E-value=1.2e-06 Score=82.65 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=68.3
Q ss_pred CccccccCcccEEEecccccc--CCCCCCCC---CCCCeeeccceeeChHHHHH---HhcCC-cccccccccccccc---
Q 042962 126 PQLVFYAKSMSLLGLDSCKLE--SPRGNVTL---SCLRELRPRHVCADDQVIKD---LISGC-PLIEFISIISCRGL--- 193 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~~--~p~~~~~l---~~L~~L~L~~~~~~~~~l~~---l~~~c-p~Le~L~L~~c~~l--- 193 (377)
+..+..+++|+.|+|++|.+. .+..+..+ ++|+.|++.+|.+++..... .+..+ ++|++|++++|.-.
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 345556789999999988874 22222233 45999999999886544433 24455 88999999988411
Q ss_pred -eee--ccCCCCCCcEEEEcccC-C---Cchhh---hcCCcccEEEEecc
Q 042962 194 -KHL--ELPNLGKLKEFKVYDEY-G---LEQVY---IQGMNAHSVHIIGL 233 (377)
Q Consensus 194 -~~l--~i~~l~~L~~L~i~~~~-~---~~~~~---~~~p~L~~L~l~g~ 233 (377)
..+ .+..+++|++|++.+|. . ...+. ...++|+.|+++++
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 111 12234789999998886 1 11121 23458888888765
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.92 E-value=1.1e-05 Score=84.65 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred CcCCCccccccCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCC
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPN 200 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~ 200 (377)
...+|..++ ++|+.|+|++|.+. .|..+ .++|+.|+|++|.+. ..+..+ ..+|+.|+++++ .+..+.-.-
T Consensus 211 LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N-~L~~LP~~l 281 (754)
T PRK15370 211 LKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERL---PSALQSLDLFHN-KISCLPENL 281 (754)
T ss_pred CCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC-cCChhH---hCCCCEEECcCC-ccCcccccc
Confidence 345676554 58999999998874 33222 247889999888774 111222 246888888754 343333221
Q ss_pred CCCCcEEEEcccCCCchhhhcC-CcccEEEEecc
Q 042962 201 LGKLKEFKVYDEYGLEQVYIQG-MNAHSVHIIGL 233 (377)
Q Consensus 201 l~~L~~L~i~~~~~~~~~~~~~-p~L~~L~l~g~ 233 (377)
.++|+.|.+++|. +..+.... ++|+.|.++++
T Consensus 282 ~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 282 PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSN 314 (754)
T ss_pred CCCCcEEECCCCc-cccCcccchhhHHHHHhcCC
Confidence 2578888888775 11111111 24566665544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.91 E-value=1.6e-06 Score=81.79 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred CcccEEEeccccccC------CCCCCCC-CCCCeeeccceeeChHH---HHHHhcCCcccccccccccccc----eee--
Q 042962 133 KSMSLLGLDSCKLES------PRGNVTL-SCLRELRPRHVCADDQV---IKDLISGCPLIEFISIISCRGL----KHL-- 196 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~------p~~~~~l-~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~L~~c~~l----~~l-- 196 (377)
++|++|++++|.+.. ...+..+ ++|+.|++.+|.+.+.. +...+..++.|+.|++++|.-- ..+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 348888888876531 0123445 77888888888775332 2334566778888888876311 111
Q ss_pred ccCCCCCCcEEEEcccCC-------CchhhhcCCcccEEEEecc
Q 042962 197 ELPNLGKLKEFKVYDEYG-------LEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~~-------~~~~~~~~p~L~~L~l~g~ 233 (377)
.+..+++|+.|++++|.. +.......++|++|+++++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 112235888888887761 1111224567777777664
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.87 E-value=4.1e-08 Score=92.26 Aligned_cols=174 Identities=17% Similarity=0.100 Sum_probs=122.7
Q ss_pred CCCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccc-ceeec
Q 042962 120 DSYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRG-LKHLE 197 (377)
Q Consensus 120 ~~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~-l~~l~ 197 (377)
.....+|++++....++.|+.+++.+ ..|+..+++++|+.|+.+++.+.. +..-++.|-.|++|...+..- ..+-.
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence 45678888888888888888888876 566678888899999988887621 111244566778777765521 11112
Q ss_pred cCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEec
Q 042962 198 LPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKI 267 (377)
Q Consensus 198 i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i 267 (377)
+.++.+|..+.+.++. ..+.-.+....|+.++.+.+. +.+|.+++.+.+|+.|+|. .++.+|..|..|.+
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence 2235677777777776 344445567889999986654 7788889999999988887 46789999999999
Q ss_pred cCCccceEEccCcc---cccccccccCCcce
Q 042962 268 SSFCLKSFLFIGYD---TLDELKLCTPNLSI 295 (377)
Q Consensus 268 ~~~~L~~l~l~~c~---~L~~l~l~~~~L~~ 295 (377)
+.|+++.+.-..|+ .+..+++..+++++
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred cccHHHhhHHHHhcccccceeeecccccccc
Confidence 99998887665554 34445555555544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.8e-06 Score=77.56 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=84.9
Q ss_pred cccCcccEEEeccccccCCCC---CCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeecc--CCCCCC
Q 042962 130 FYAKSMSLLGLDSCKLESPRG---NVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLEL--PNLGKL 204 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~---~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i--~~l~~L 204 (377)
..+++|+.|+|+.|.+..|.+ -..++.||+|.|.+|.++-..+..++..||+|+.|.+....+...... ..+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 357889999999988766532 236789999999999998888888899999999999998753322111 124689
Q ss_pred cEEEEcccC--CC--chhhhcCCcccEEEEeccc----cCCcee----eccCCCccccchh
Q 042962 205 KEFKVYDEY--GL--EQVYIQGMNAHSVHIIGLH----MLPHIS----VVPCKNLKKLKLC 253 (377)
Q Consensus 205 ~~L~i~~~~--~~--~~~~~~~p~L~~L~l~g~~----~~~~~~----~~~~~~L~~L~L~ 253 (377)
+.|+++++. .. .......|.|+.|.++.+. ..++.+ ....++|++|++.
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 999999887 22 2344567888888774432 111111 2344566666665
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.71 E-value=2.8e-06 Score=71.45 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc----ccee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR----GLKH 195 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~----~l~~ 195 (377)
....+|+.+....+|+.|++.+|.+ ..|..+.+++.|+.|++.-+++ ..+..-++++|.||.|++.... .+..
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccccccccCCc
Confidence 4455677777778888888887776 4566677778888888776655 2233346677888888877542 1111
Q ss_pred eccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 196 LELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 196 l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
-... +.+|+.|.++++. .++.-.....+|+.|.+.++. ...| .+++.++.|+.|.|.+|.|
T Consensus 122 nff~-m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp---------------keig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 122 NFFY-MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP---------------KEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred chhH-HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc---------------HHHHHHHHHHHHhccccee
Confidence 1111 3567777776665 223333445666666664432 1122 2455556666667777776
Q ss_pred ceE
Q 042962 273 KSF 275 (377)
Q Consensus 273 ~~l 275 (377)
+.+
T Consensus 186 ~vl 188 (264)
T KOG0617|consen 186 TVL 188 (264)
T ss_pred eec
Confidence 654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.42 E-value=2.8e-05 Score=73.35 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCcCCCcccc-ccCcccEEEeccccc--cCCCCCCCCCCCCeeeccc-eeeChHHHHHHhcCCccccccccccc--ccce
Q 042962 121 SYYNLPQLVF-YAKSMSLLGLDSCKL--ESPRGNVTLSCLRELRPRH-VCADDQVIKDLISGCPLIEFISIISC--RGLK 194 (377)
Q Consensus 121 ~~~~lp~~l~-~~~~L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~c--~~l~ 194 (377)
....||+..| ..++|+.|+|++|.+ ..|..|.++++|.+|.+.+ |+++ +.....+.+...|+-|.+.-+ ..+.
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 4556776655 678888888887765 3456777888888887777 5553 233445666667776666533 2222
Q ss_pred eeccCCCCCCcEEEEcccC
Q 042962 195 HLELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 195 ~l~i~~l~~L~~L~i~~~~ 213 (377)
.-.+..+++|..|.+.++.
T Consensus 157 ~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HHHHHHhhhcchhcccchh
Confidence 2222235666666666654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.21 E-value=0.00029 Score=65.63 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=93.1
Q ss_pred CCCCCCCeeeccceeeC---hHHHHHHhcCCcccccccccccc-c----------ceee----ccCCCCCCcEEEEcccC
Q 042962 152 VTLSCLRELRPRHVCAD---DQVIKDLISGCPLIEFISIISCR-G----------LKHL----ELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 152 ~~l~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~L~~c~-~----------l~~l----~i~~l~~L~~L~i~~~~ 213 (377)
.++|.|++|+|+.|.+. .+.+..++++|..|++|.|.+|. + +..+ .+.+-++|+.+...++.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34455666666666552 35677788899999999999882 1 0111 12223789999998887
Q ss_pred --C-----CchhhhcCCcccEEEEeccccCC------ceeeccCCCccccchh-------------hhccCCCCCceEec
Q 042962 214 --G-----LEQVYIQGMNAHSVHIIGLHMLP------HISVVPCKNLKKLKLC-------------QEIVDCMKLRSIKI 267 (377)
Q Consensus 214 --~-----~~~~~~~~p~L~~L~l~g~~~~~------~~~~~~~~~L~~L~L~-------------~~l~~~~~L~~L~i 267 (377)
. +.......|.|+.+++..+.... ...+..|+.|++|+|. ..+...++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 1 12223345889999886543111 1125667777777775 12344455555555
Q ss_pred cCCccceEEccCcccccccccccCCcceEEEcccccc--------cCcc-ccccceEEEEecCC
Q 042962 268 SSFCLKSFLFIGYDTLDELKLCTPNLSIFKYHGDLIS--------FSST-ALALSEIALVFNPD 322 (377)
Q Consensus 268 ~~~~L~~l~l~~c~~L~~l~l~~~~L~~~~~~~~~~p--------~~l~-~~~L~~l~l~~n~~ 322 (377)
+.+.|+.=--. .-...+.-..|+|+.+.+.|..+. .... .+.|.+|+|..|..
T Consensus 249 ~dcll~~~Ga~--a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAI--AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHH--HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44443320000 001122223566666665554443 1122 36788888887765
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.11 E-value=4e-05 Score=72.82 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCC----CCCCCCCCCeeeccce
Q 042962 90 SSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPR----GNVTLSCLRELRPRHV 165 (377)
Q Consensus 90 ~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~----~~~~l~~L~~L~L~~~ 165 (377)
..|..-+..+- ..++++.+.-..+ .....+-.....|+++++|.+.+|...+.. -...++.|+.|+|..|
T Consensus 127 ~VV~~~~~Rcg-g~lk~LSlrG~r~-----v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 127 GVVENMISRCG-GFLKELSLRGCRA-----VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC 200 (483)
T ss_pred cceehHhhhhc-ccccccccccccc-----CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence 34444444443 3467777763321 122223333457999999999999742221 1246789999999996
Q ss_pred e-eChHHHHHHhcCCccccccccccccccee----eccCCCCCCcEEEEcccC
Q 042962 166 C-ADDQVIKDLISGCPLIEFISIISCRGLKH----LELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 166 ~-~~~~~l~~l~~~cp~Le~L~L~~c~~l~~----l~i~~l~~L~~L~i~~~~ 213 (377)
. +++..++.+..+||+|++|++++|..+.. ....++..|+.+...+|.
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 4 48889998899999999999999954433 122245667777666776
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.05 E-value=0.00057 Score=66.77 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=88.9
Q ss_pred cccCcccEEEeccccc-cCCCCCCCCC-CCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccC-CCCCCcE
Q 042962 130 FYAKSMSLLGLDSCKL-ESPRGNVTLS-CLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELP-NLGKLKE 206 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~-~~p~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~-~l~~L~~ 206 (377)
...+.++.|.+.++.+ .+++....++ +|+.|++.++.+ ..+..-+..+|.|+.|.++.+.-..-.... ..+.|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3446677888877765 4444444453 788888888877 222223567888888888877422111111 2477888
Q ss_pred EEEcccC--CCchhhhcCCc-ccEEEEecc-ccCCceeeccCCCccccchh--------hhccCCCCCceEeccCCccce
Q 042962 207 FKVYDEY--GLEQVYIQGMN-AHSVHIIGL-HMLPHISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 207 L~i~~~~--~~~~~~~~~p~-L~~L~l~g~-~~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~ 274 (377)
|.++++. .++.. +..++ |+++.+.++ ....+..+.+..++..+.+. ..++++++++.|+++.|.+..
T Consensus 191 L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 191 LDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 8888776 22222 12333 777777665 22333334444444444433 234666677777777777665
Q ss_pred EE-ccCccccccccccc
Q 042962 275 FL-FIGYDTLDELKLCT 290 (377)
Q Consensus 275 l~-l~~c~~L~~l~l~~ 290 (377)
+. +....+++.++++.
T Consensus 270 i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 270 ISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccccCccCEEeccC
Confidence 54 33334555555444
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.04 E-value=0.00019 Score=50.35 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=28.4
Q ss_pred cccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 134 SMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 134 ~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
+|++|++++|.+. .| ..+.++++|++|++++|.+..- ....+.++|+|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 4566666666542 22 2455566666666666655211 1122445555555555543
No 32
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.96 E-value=0.00049 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.524 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHhhcCChhHH
Q 042962 15 ISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 15 iS~LPD~lL~~ILs~Lp~~da 35 (377)
|+.||+||+.+||++||.+|.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl 21 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDL 21 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHH
Confidence 678999999999999999997
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00018 Score=74.67 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=78.7
Q ss_pred CcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCC
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPN 200 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~ 200 (377)
.+.+|.++.+..+|+.|.|.++.+ ..|.++..+++|+.|+++.|.+.. +...+..|..++.+..++...+..+..
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 455666666777777777777665 345566677777777777777622 223345566666666665522221111
Q ss_pred CCCCcEEEEcccCCCchhhhcCCcccE-EEEeccccCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEEccC
Q 042962 201 LGKLKEFKVYDEYGLEQVYIQGMNAHS-VHIIGLHMLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFLFIG 279 (377)
Q Consensus 201 l~~L~~L~i~~~~~~~~~~~~~p~L~~-L~l~g~~~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~l~~ 279 (377)
...|.+++..+.....+.++.-+++. ++++.+... ..++.++++|+.+.. .+..+..+.+++..++.+....
T Consensus 156 -~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c-----~rn~ls~l~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 156 -TSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHC-----ERNQLSELEISGPSLTALYADH 228 (1081)
T ss_pred -ccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhh-----hhcccceEEecCcchheeeecc
Confidence 22444444433322233333444444 666555433 445666776664433 3344455555555555554444
Q ss_pred c
Q 042962 280 Y 280 (377)
Q Consensus 280 c 280 (377)
+
T Consensus 229 n 229 (1081)
T KOG0618|consen 229 N 229 (1081)
T ss_pred C
Confidence 3
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.89 E-value=0.00064 Score=64.44 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=9.2
Q ss_pred ccCCCCCceEeccCCccce
Q 042962 256 IVDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 256 l~~~~~L~~L~i~~~~L~~ 274 (377)
+.++++|++|++++|+++.
T Consensus 270 f~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred HhhcccceEeccCCCccch
Confidence 4444555555555544443
No 35
>PLN03150 hypothetical protein; Provisional
Probab=96.79 E-value=0.0014 Score=67.90 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred ccEEEeccccc--cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEc
Q 042962 135 MSLLGLDSCKL--ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVY 210 (377)
Q Consensus 135 L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~ 210 (377)
++.|+|+++.+ ..|..+..+++|+.|+|++|.+.+..... ++.++.|+.|+|+++. +..+-.+..+++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 66777777765 33455667777777777777775443333 5677777777777663 2223334456777777777
Q ss_pred ccC
Q 042962 211 DEY 213 (377)
Q Consensus 211 ~~~ 213 (377)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 765
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.0005 Score=71.62 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=61.9
Q ss_pred cCcccEEEeccccc---cCCCC-CCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEE
Q 042962 132 AKSMSLLGLDSCKL---ESPRG-NVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEF 207 (377)
Q Consensus 132 ~~~L~~L~L~~~~~---~~p~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L 207 (377)
-.+|++|+++|... ..|.. ..-||+|++|.+.+..+..+.+..+..++|+|..|+++++.--.-..++.+++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 36788888887542 11211 235788888888888886666777788888888888887631111234445666666
Q ss_pred EEcccCCC--c--hhhhcCCcccEEEEecc
Q 042962 208 KVYDEYGL--E--QVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 208 ~i~~~~~~--~--~~~~~~p~L~~L~l~g~ 233 (377)
.+.+-... . .-.++..+|+.|+++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 65544300 1 01245667777777543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.72 E-value=0.00032 Score=64.26 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=12.3
Q ss_pred CCCccccccCcccEEEecccc
Q 042962 124 NLPQLVFYAKSMSLLGLDSCK 144 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~ 144 (377)
.+|..+...++|..+.++.|.
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALS 225 (490)
T ss_pred ccccchHHhhhhheeeeeccc
Confidence 344444455667777766654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.60 E-value=0.0012 Score=64.45 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=113.6
Q ss_pred EEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCC-cccccccccccccceee--ccCCCCCCcEEEEccc
Q 042962 137 LLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGC-PLIEFISIISCRGLKHL--ELPNLGKLKEFKVYDE 212 (377)
Q Consensus 137 ~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~c-p~Le~L~L~~c~~l~~l--~i~~l~~L~~L~i~~~ 212 (377)
.|++..+.+ ........++.++.|.+.++.+. .+....... ++|+.|++++.. +..+ .+..+++|+.|.+..+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc--cCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 567776665 33345566788999999999873 233333444 389999998764 3333 5666799999999999
Q ss_pred C--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh--------hhccCCCCCceEeccCCccce--EEccC
Q 042962 213 Y--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKS--FLFIG 279 (377)
Q Consensus 213 ~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~--l~l~~ 279 (377)
. .++......++|+.|.++++. ..++..+.....|+.+.+. ..+.++.++..+.+..++++. -.++.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 8 344443378999999998875 3344433455557777666 234666777777777887776 34555
Q ss_pred cccccccccccCCcceEEEcccccccCccccccceEEEEecC
Q 042962 280 YDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNP 321 (377)
Q Consensus 280 c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~ 321 (377)
..+++.+.+..+.+..... .....+++.++++.+.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-------~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-------LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccceecccccccccccc-------ccccCccCEEeccCcc
Confidence 6667777666555443322 1122467777776553
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00065 Score=67.71 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=69.5
Q ss_pred ccccCcccEEEeccc-cc--cCC----CCCCCCCCCCeeecccee-eChHHHHHHhcCCcccccccccccccceeecc--
Q 042962 129 VFYAKSMSLLGLDSC-KL--ESP----RGNVTLSCLRELRPRHVC-ADDQVIKDLISGCPLIEFISIISCRGLKHLEL-- 198 (377)
Q Consensus 129 l~~~~~L~~L~L~~~-~~--~~p----~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i-- 198 (377)
...|+.|+.|++++| .. ..+ .....+++|+.|++.++. +++..+..+...||+||.|.+.+|..++...+
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 446888999988873 22 111 123456888899998887 68888888777899999999888865433211
Q ss_pred --CCCCCCcEEEEcccCC-----CchhhhcCCcccEEEE
Q 042962 199 --PNLGKLKEFKVYDEYG-----LEQVYIQGMNAHSVHI 230 (377)
Q Consensus 199 --~~l~~L~~L~i~~~~~-----~~~~~~~~p~L~~L~l 230 (377)
..++.|++|.+..|.. +..+...+|+|+.|.+
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 1368899999988872 3334445777777665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.55 E-value=0.00051 Score=48.07 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEccc
Q 042962 155 SCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~ 212 (377)
|+|++|++.+|.+.. .....+.++++|++|+++++. .+..-.+.++++|+.|.+.+|
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 467777777776631 112335567777777777552 222222334566666666655
No 41
>PLN03150 hypothetical protein; Provisional
Probab=96.50 E-value=0.0023 Score=66.35 Aligned_cols=67 Identities=7% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCCccccccCcccEEEeccccc--cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKL--ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR 191 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 191 (377)
.+|..+..+++|+.|+|++|.+ ..|..+..+++|+.|+|++|.+.+..+.. ++++++|+.|+|+++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCc
Confidence 5677888899999999999987 45667889999999999999997665554 7889999999999874
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.50 E-value=0.00074 Score=68.62 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=98.2
Q ss_pred cCceEEEEEEeccCCccchhhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCC
Q 042962 71 FSLEKFTFIVQLSDDVKFVSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRG 150 (377)
Q Consensus 71 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~ 150 (377)
.+.+.|+.......++..-..+.+.+++.. ..+.+.+--. + ...... |-.++.+++|++|.|.+|.+....+
T Consensus 55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~-p----a~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 55 APVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPS-P----ARDPTE-PISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred CCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeeccc-C----CCCCCC-CceeccccceeeEEecCcchhhhhh
Confidence 367888775542111111123333344443 3344554322 1 122233 8888999999999999998643211
Q ss_pred CCCC---------------------------------CCCCeeeccceee--ChHHHHHHhcCCccccccccccccccee
Q 042962 151 NVTL---------------------------------SCLRELRPRHVCA--DDQVIKDLISGCPLIEFISIISCRGLKH 195 (377)
Q Consensus 151 ~~~l---------------------------------~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~L~~c~~l~~ 195 (377)
+..+ -.|.+-+.+.|.+ -++.+ .-.|.||.|+|+.+.-...
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL----qll~ale~LnLshNk~~~v 202 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL----QLLPALESLNLSHNKFTKV 202 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH----HHHHHhhhhccchhhhhhh
Confidence 1111 0122222233322 11222 2246677777775532111
Q ss_pred eccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh----------hhccCCCCCc
Q 042962 196 LELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC----------QEIVDCMKLR 263 (377)
Q Consensus 196 l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~----------~~l~~~~~L~ 263 (377)
-.+.-|++|+.|+|+.+. .++.+....-.|+.|.++||....-.++.++++|..|+++ ..++.+..|.
T Consensus 203 ~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 133336788888887776 3444444444588888877754334446677777777776 2234445566
Q ss_pred eEeccCCc
Q 042962 264 SIKISSFC 271 (377)
Q Consensus 264 ~L~i~~~~ 271 (377)
.|.+.+|-
T Consensus 283 ~L~LeGNP 290 (1096)
T KOG1859|consen 283 VLWLEGNP 290 (1096)
T ss_pred HHhhcCCc
Confidence 66665553
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.36 E-value=0.00049 Score=68.56 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=79.9
Q ss_pred ccCcccEEEeccccccCC----CCCCCCCCCCeeeccce-ee---ChHHHHHHhcCCcccccccccccccceeeccC---
Q 042962 131 YAKSMSLLGLDSCKLESP----RGNVTLSCLRELRPRHV-CA---DDQVIKDLISGCPLIEFISIISCRGLKHLELP--- 199 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p----~~~~~l~~L~~L~L~~~-~~---~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~--- 199 (377)
.++.|+.|.+.+|..... +....++.|+.|++.++ .. .+.....+...|++|+.|+++.|..+....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 378899998888753221 23456889999999872 21 23333446778999999999988644332221
Q ss_pred -CCCCCcEEEEcccC-----CCchhhhcCCcccEEEEeccccC----CceeeccCCCccccch
Q 042962 200 -NLGKLKEFKVYDEY-----GLEQVYIQGMNAHSVHIIGLHML----PHISVVPCKNLKKLKL 252 (377)
Q Consensus 200 -~l~~L~~L~i~~~~-----~~~~~~~~~p~L~~L~l~g~~~~----~~~~~~~~~~L~~L~L 252 (377)
.|++|+.|.+.+|. ++..+...+|+|++|++++.... ......+|++++.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 26899999988887 24445567899999999765421 1111345666665544
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.31 E-value=0.00082 Score=61.62 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred cCCCccccccCcccEEEecccc--cc--------CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccc
Q 042962 123 YNLPQLVFYAKSMSLLGLDSCK--LE--------SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIIS 189 (377)
Q Consensus 123 ~~lp~~l~~~~~L~~L~L~~~~--~~--------~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~ 189 (377)
|.+...+--|..|+.|..++.. +. .|-.+..|.+|+++.++.+.- ..+..+...-|.|+.+.+.+
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeec
Confidence 3343333457889988887532 11 111335677888888877733 33444455567777776653
No 45
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.09 E-value=0.0064 Score=34.67 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=22.2
Q ss_pred CCCeeeccceee-ChHHHHHHhcCCc
Q 042962 156 CLRELRPRHVCA-DDQVIKDLISGCP 180 (377)
Q Consensus 156 ~L~~L~L~~~~~-~~~~l~~l~~~cp 180 (377)
+||+|+|..+.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5568999999998
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.02 E-value=0.0045 Score=40.27 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred CcccEEEecccccc-CCCCCCCCCCCCeeeccceee
Q 042962 133 KSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 133 ~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~ 167 (377)
++|++|+|++|.+. .|+.+.++++|+.|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 35777777777763 333367777777777777766
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.82 E-value=0.0069 Score=63.28 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=93.6
Q ss_pred cccEEEeccccccCCC-CCCCCCCCCeeeccceeeC-----h-------HHHHHHhc--CCccccccccccccccee---
Q 042962 134 SMSLLGLDSCKLESPR-GNVTLSCLRELRPRHVCAD-----D-------QVIKDLIS--GCPLIEFISIISCRGLKH--- 195 (377)
Q Consensus 134 ~L~~L~L~~~~~~~p~-~~~~l~~L~~L~L~~~~~~-----~-------~~l~~l~~--~cp~Le~L~L~~c~~l~~--- 195 (377)
+++..++.+....... ....-..|++|.|.+.... + ..+..++. .-.+|+.|++++-..+..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~ 140 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP 140 (699)
T ss_pred eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence 3555566554432111 1122234777777766331 1 12333322 235788999886422110
Q ss_pred eccC-CCCCCcEEEEcccC----CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh----------hhccCCC
Q 042962 196 LELP-NLGKLKEFKVYDEY----GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC----------QEIVDCM 260 (377)
Q Consensus 196 l~i~-~l~~L~~L~i~~~~----~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~----------~~l~~~~ 260 (377)
-.++ -+|+|++|.+.+-. .......+.|+|.+|+++|..-.--.+++++++|+.|.+. .++-+++
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 1222 26999999998865 2344556789999999988763323457788888877665 3567788
Q ss_pred CCceEeccCCccceEEccCcccccccccccCCcceEEEcccccc
Q 042962 261 KLRSIKISSFCLKSFLFIGYDTLDELKLCTPNLSIFKYHGDLIS 304 (377)
Q Consensus 261 ~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~~~L~~~~~~~~~~p 304 (377)
+|+.|+||........ ..-....+.....|+|+.+.+.|..+.
T Consensus 221 ~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchh
Confidence 8888888864322111 000011122233566666666555443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.82 E-value=0.0017 Score=63.94 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=49.2
Q ss_pred cccCcccEEEeccccccCCCC-CCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRG-NVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
..+++|+.|++.++.+..... ...+++|+.|++++|.++ .+.. +..++.|+.|.++++.--..-....++.|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~--~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT--KLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccc--cccc-hhhccchhhheeccCcchhccCCccchhhhccc
Confidence 345666666666666533333 455666666666666662 1122 233444666666655311111111245666666
Q ss_pred EcccC--CCchh-hhcCCcccEEEEecc
Q 042962 209 VYDEY--GLEQV-YIQGMNAHSVHIIGL 233 (377)
Q Consensus 209 i~~~~--~~~~~-~~~~p~L~~L~l~g~ 233 (377)
+.++. .+... ....++++.+.+.++
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66655 11110 133455555555443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.26 E-value=0.023 Score=49.49 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=57.5
Q ss_pred CcccEEEeccccccCCCCCCCCCCCCeeeccceeeC--hHHHHHHhcCCcccccccccccc--ccee-eccCCCCCCcEE
Q 042962 133 KSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCAD--DQVIKDLISGCPLIEFISIISCR--GLKH-LELPNLGKLKEF 207 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~L~~c~--~l~~-l~i~~l~~L~~L 207 (377)
.+...++|+.|.+.....+..++.|.+|.|.+|.++ +..+.. ..|+|..|.+.+.+ .+.. ..+.+||+|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456667777777644445667778888888888773 222222 35677777777642 1211 133346788888
Q ss_pred EEcccC------CCchhhhcCCcccEEEEec
Q 042962 208 KVYDEY------GLEQVYIQGMNAHSVHIIG 232 (377)
Q Consensus 208 ~i~~~~------~~~~~~~~~p~L~~L~l~g 232 (377)
++.++. .-..+.-..|+|+.|++.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777765 1122333457777777754
No 50
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.18 E-value=0.005 Score=40.64 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.6
Q ss_pred CCCCcHHHHHHHhhcCChhHH
Q 042962 15 ISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 15 iS~LPD~lL~~ILs~Lp~~da 35 (377)
|++||+|++.+|+++|+.+|.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~ 23 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDL 23 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHH
Confidence 568999999999999999998
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.08 E-value=0.0053 Score=55.28 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=64.2
Q ss_pred ccCcccEEEeccccccCCCCCCCCCCCCeeeccceee-ChHHHHHHhcCCccccccccccccc--ceee-ccCCCCCCcE
Q 042962 131 YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCA-DDQVIKDLISGCPLIEFISIISCRG--LKHL-ELPNLGKLKE 206 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~L~~c~~--l~~l-~i~~l~~L~~ 206 (377)
....|+.|++.++.+.....+-.+|+||+|.++.|.. ....+..++..||+|.+|+++.... +..+ .+..+.+|+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4556777777777765445566778899999988844 2233445566789999999987631 2111 1223467888
Q ss_pred EEEcccCC------CchhhhcCCcccEEEEec
Q 042962 207 FKVYDEYG------LEQVYIQGMNAHSVHIIG 232 (377)
Q Consensus 207 L~i~~~~~------~~~~~~~~p~L~~L~l~g 232 (377)
|.+.+|.. -..+..-+|+|++|+-..
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 88888871 123344567787777543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.012 Score=54.12 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=72.0
Q ss_pred ccccCcccEEEeccccccCCCCC----CCCCCCCeeeccceeeCh-HHHHHHhcCCcccccccccccc---cceeeccCC
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGN----VTLSCLRELRPRHVCADD-QVIKDLISGCPLIEFISIISCR---GLKHLELPN 200 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~----~~l~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~L~~c~---~l~~l~i~~ 200 (377)
+++...++.|.+.+|.++....+ ...+.++.|+|.+|.+++ +.+..++.+.|.|+.|+|+... .+..+...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p- 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP- 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-
Confidence 33444566677777776543221 346789999999999943 5677788899999999998542 23334433
Q ss_pred CCCCcEEEEcccC----CCchhhhcCCcccEEEEecc
Q 042962 201 LGKLKEFKVYDEY----GLEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 201 l~~L~~L~i~~~~----~~~~~~~~~p~L~~L~l~g~ 233 (377)
..+|+.|.+.+.. ...+..-+.|.++.|+++.+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4789999998877 23444456788888888766
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.95 E-value=0.0029 Score=62.78 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=61.4
Q ss_pred EEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc-cceeeccCCCCCCcEEEEcccC-
Q 042962 137 LLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR-GLKHLELPNLGKLKEFKVYDEY- 213 (377)
Q Consensus 137 ~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~l~~l~i~~l~~L~~L~i~~~~- 213 (377)
..+|+.|++ ..|..+..|-.|+.|.|+.|.+ ..+..-+.+...|..|+|+... +..+..+.. --|+.|.+.++.
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEecCcc
Confidence 344555554 2233444455555555555544 1122223334444444444331 111122221 234444444443
Q ss_pred -C-CchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh--------hhccCCCCCceEeccCCccceEEccC--c
Q 042962 214 -G-LEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKSFLFIG--Y 280 (377)
Q Consensus 214 -~-~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~l~l~~--c 280 (377)
. ...+. ..+.|..|+.+.+. ...+..+++..+|+.|.+. .++. +-.|.+|++++|++.++-+.. .
T Consensus 156 ~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m 233 (722)
T KOG0532|consen 156 TSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKM 233 (722)
T ss_pred ccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhh
Confidence 1 11122 34444444443322 2233334444444444333 2223 334556666666666554332 2
Q ss_pred ccccccccccC
Q 042962 281 DTLDELKLCTP 291 (377)
Q Consensus 281 ~~L~~l~l~~~ 291 (377)
..|+.+.+..+
T Consensus 234 ~~Lq~l~LenN 244 (722)
T KOG0532|consen 234 RHLQVLQLENN 244 (722)
T ss_pred hhheeeeeccC
Confidence 34555555443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.90 E-value=0.068 Score=52.08 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 042962 181 LIEFISIISCR 191 (377)
Q Consensus 181 ~Le~L~L~~c~ 191 (377)
+|+.|.+++|.
T Consensus 95 nLe~L~Ls~Cs 105 (426)
T PRK15386 95 GLEKLTVCHCP 105 (426)
T ss_pred hhhheEccCcc
Confidence 45555555554
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.61 E-value=0.0089 Score=56.00 Aligned_cols=132 Identities=13% Similarity=0.201 Sum_probs=84.6
Q ss_pred cccCcccEEEeccccccCC------CCCCCCCCCCeeeccceeeCh---HHHHHHhcCCcccccccccccc----ccee-
Q 042962 130 FYAKSMSLLGLDSCKLESP------RGNVTLSCLRELRPRHVCADD---QVIKDLISGCPLIEFISIISCR----GLKH- 195 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p------~~~~~l~~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~L~~c~----~l~~- 195 (377)
.+-+.|+++....|++... ..+...+.|+.+.+..|.+.. ..+..-+..||.|+.|+|.... +-..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3457799999998887322 124556899999999998832 2334446789999999998762 1111
Q ss_pred -eccCCCCCCcEEEEcccC----C----CchhhhcCCcccEEEEeccccCCce--eeccCCCccccchhhhccCCCCCce
Q 042962 196 -LELPNLGKLKEFKVYDEY----G----LEQVYIQGMNAHSVHIIGLHMLPHI--SVVPCKNLKKLKLCQEIVDCMKLRS 264 (377)
Q Consensus 196 -l~i~~l~~L~~L~i~~~~----~----~~~~~~~~p~L~~L~l~g~~~~~~~--~~~~~~~L~~L~L~~~l~~~~~L~~ 264 (377)
-....++.|+.|.+.+|. + ...+.-.+|+|+.+.+.|+-..... .+.. -+..-+.|++
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~-----------~~~ek~dL~k 302 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA-----------CMAEKPDLEK 302 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH-----------HHhcchhhHH
Confidence 123345789999999997 1 1223345899999999776411110 0111 2233567777
Q ss_pred EeccCCcc
Q 042962 265 IKISSFCL 272 (377)
Q Consensus 265 L~i~~~~L 272 (377)
|.+++|.+
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 88888877
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.39 E-value=0.00095 Score=66.07 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccce-eeccCCCC
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLK-HLELPNLG 202 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~-~l~i~~l~ 202 (377)
.+|..+.+...|+.|+|+.|.+...+...++--|+.|-+.+|+++ .+..-++..+.|..|+.+.|.-.. .-.+..+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 345555555555555555555432222222223555555555441 111112344555555555442110 11122234
Q ss_pred CCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccch
Q 042962 203 KLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKL 252 (377)
Q Consensus 203 ~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L 252 (377)
+|+.|.+..+. .++.-.. .-.|..|+++.+. .++|+.+.+++.|++|-|
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeee
Confidence 55555555544 1111111 2235555554332 444554444444444433
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.22 E-value=0.017 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCCCeeeccceeeChHHHHHHhcCCcccccccccccc
Q 042962 155 SCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR 191 (377)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 191 (377)
++|++|++.++.+++ ++..+++||+|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 478899999988842 44446788888888888773
No 58
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=94.06 E-value=0.04 Score=34.62 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.1
Q ss_pred CcHHHHHHHhhcCChhHH---------hhcC
Q 042962 18 LLAPILHHILSFLSIEQV---------WHSH 39 (377)
Q Consensus 18 LPD~lL~~ILs~Lp~~da---------Wr~l 39 (377)
||+|++.+|+++|+.+|. |+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~ 31 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSL 31 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999887 8877
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.96 E-value=0.056 Score=47.13 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred cccCcccEEEecccccc-CCCCC-CCCCCCCeeeccceee-ChHHHHHHhcCCcccccccccccc-----cceeeccCCC
Q 042962 130 FYAKSMSLLGLDSCKLE-SPRGN-VTLSCLRELRPRHVCA-DDQVIKDLISGCPLIEFISIISCR-----GLKHLELPNL 201 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~-~p~~~-~~l~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~L~~c~-----~l~~l~i~~l 201 (377)
-..+.|..|.|.+|++. +.+.+ .-+|+|+.|.|.+|.+ .-..+.. +..||.|++|.+-+.. +.....+..+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEec
Confidence 35788999999999873 33333 3478899999999988 3333444 6789999999998752 3334445557
Q ss_pred CCCcEEEEcccC
Q 042962 202 GKLKEFKVYDEY 213 (377)
Q Consensus 202 ~~L~~L~i~~~~ 213 (377)
|+|+.|++.+-.
T Consensus 140 p~l~~LDF~kVt 151 (233)
T KOG1644|consen 140 PSLRTLDFQKVT 151 (233)
T ss_pred CcceEeehhhhh
Confidence 999999987754
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.59 E-value=0.0097 Score=58.66 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=77.6
Q ss_pred cccCcccEEEeccccccC-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 130 FYAKSMSLLGLDSCKLES-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
..+..++.+.+..+.+.. -.....+.+|+.|++.++.+ ..+...+.++++|+.|++++..-..--.+..++.|+.|.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 346667777777766543 23477899999999999988 334444678999999999977322212333456799999
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccccCCcee--eccCCCccccchh
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHIS--VVPCKNLKKLKLC 253 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~--~~~~~~L~~L~L~ 253 (377)
+.+|. .+.... ..++|+.+.+.++....... ...+.+++.+.+.
T Consensus 147 l~~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 147 LSGNLISDISGLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred eccCcchhccCCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 99997 222221 26778888876553111111 3566667766665
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.49 E-value=0.029 Score=50.57 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=32.8
Q ss_pred CcccccccccccccceeeccCCCCCCcEEEEcccC-----CCchhhhcCCcccEEEEecccc
Q 042962 179 CPLIEFISIISCRGLKHLELPNLGKLKEFKVYDEY-----GLEQVYIQGMNAHSVHIIGLHM 235 (377)
Q Consensus 179 cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~-----~~~~~~~~~p~L~~L~l~g~~~ 235 (377)
...|+.|++.++.-.+......+|+||+|.++.++ ++......+|+|+++.++|+..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 34445555554421111122235778888887773 3445556678888888887753
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.12 Score=47.89 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCceEEEEEeeC-CCCCCCCCCcCCCccccccCcccEEEeccccccCC--CCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCC-PHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESP--RGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~-~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
..|++++|.-.. ..| ..+-..+.+++.|+.|+|+.|.+..+ .......+|++|.|.+..++=......+..
T Consensus 71 ~~v~elDL~~N~iSdW------seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDW------SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhcccchhccH------HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 468888886321 011 11222344678999999998887533 112456789999999988765666677788
Q ss_pred Ccccccccccccc----ccee--eccCCCCCCcEEEEcccC-----CCchhhhcCCcccEEEEecc
Q 042962 179 CPLIEFISIISCR----GLKH--LELPNLGKLKEFKVYDEY-----GLEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 179 cp~Le~L~L~~c~----~l~~--l~i~~l~~L~~L~i~~~~-----~~~~~~~~~p~L~~L~l~g~ 233 (377)
.|.+++|.++... .+.. ..-.+ +.+++|....|. ....+.--.|++..+-++.+
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWS-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccc-hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 9999999888541 1111 11122 677777777776 22233344678877777654
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.42 E-value=0.0026 Score=64.83 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=23.8
Q ss_pred cCcccEEEeccccccC---CCCCCCCCCCCeeeccceee
Q 042962 132 AKSMSLLGLDSCKLES---PRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~~---p~~~~~l~~L~~L~L~~~~~ 167 (377)
.++++.|++-..--.- |-.+..|.+||.|.|.+|.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence 4566666665432111 22456789999999999987
No 64
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.36 E-value=0.028 Score=60.38 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=28.7
Q ss_pred cCcccEEEecccc--c-cCCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 132 AKSMSLLGLDSCK--L-ESPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 132 ~~~L~~L~L~~~~--~-~~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
|+.|++|-+.++. + ..+. .+..+|.|+.|+|++|.- ...++.-++..-+|++|+++..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC
Confidence 4456666666553 2 2221 245566666666665422 1222333555556666666544
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.47 E-value=0.32 Score=47.46 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCCCeeeccceeeChHHHHHHhcCCc-ccccccccccccceeeccCCCCCCcEEEEcccCCCchhhhcCCcccEEEEec
Q 042962 154 LSCLRELRPRHVCADDQVIKDLISGCP-LIEFISIISCRGLKHLELPNLGKLKEFKVYDEYGLEQVYIQGMNAHSVHIIG 232 (377)
Q Consensus 154 l~~L~~L~L~~~~~~~~~l~~l~~~cp-~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~~~~~~~~~~p~L~~L~l~g 232 (377)
+.+++.|++++|.+. .+. ..| +|++|.+.+|..+..+.-.-.++|++|.+.+|..+..+ -++|+.|.+.+
T Consensus 51 ~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCC
Confidence 466677777766441 111 122 46777777666554333110146777777766422211 13466666543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.08 E-value=0.13 Score=41.33 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=34.1
Q ss_pred cccCcccEEEeccccccCC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc-ccceeeccCCCCCCcEE
Q 042962 130 FYAKSMSLLGLDSCKLESP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC-RGLKHLELPNLGKLKEF 207 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c-~~l~~l~i~~l~~L~~L 207 (377)
..|++|+.+.+......++ ..+.++++|+.+.+... +. ..-...+.+|+.|+.+.+... ..+..-....+++|+.+
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEE
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccccccccccccccccccccc
Confidence 3567788888764322222 35666777777777653 21 001123556766777777532 11111122224566666
Q ss_pred EEcc
Q 042962 208 KVYD 211 (377)
Q Consensus 208 ~i~~ 211 (377)
.+..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 6643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.0065 Score=55.32 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=35.2
Q ss_pred ccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeCh-HHHHHHhcCCcccccccccc
Q 042962 131 YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADD-QVIKDLISGCPLIEFISIIS 189 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~L~~ 189 (377)
.++.|++|.|+-|.+.....+..|++|+.|.|..|.+.+ ..+.- +.+.|+|+.|-|..
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDE 97 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhcc
Confidence 456677777776666544456667777777777776621 22222 45666666666664
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.50 E-value=0.28 Score=52.93 Aligned_cols=157 Identities=14% Similarity=0.086 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceee-
Q 042962 89 VSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCA- 167 (377)
Q Consensus 89 ~~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~- 167 (377)
...+.-|+.......-+..... .+ ......|... +-.+.+...+-++.+..-+.....+.|++|-+.++..
T Consensus 487 vRe~al~ias~~~~~~e~~iv~--~~-----~~~~~~~~~~-~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 487 VREMALWIASDFGKQEENQIVS--DG-----VGLSEIPQVK-SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred HHHHHHHHhccccccccceEEE--CC-----cCcccccccc-chhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 4556666665443333332221 11 1233344332 3356677777766653223445566899999988852
Q ss_pred ChHHHHHHhcCCcccccccccccccceee--ccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc--cCCceee
Q 042962 168 DDQVIKDLISGCPLIEFISIISCRGLKHL--ELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH--MLPHISV 241 (377)
Q Consensus 168 ~~~~l~~l~~~cp~Le~L~L~~c~~l~~l--~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~--~~~~~~~ 241 (377)
-.......+...|.|..|++++|..+..+ .|+.+-+||.|++++.. .++.-......|.+|++.... ..++...
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence 11122233566899999999998766554 35556788888888776 233333344566666664322 2222223
Q ss_pred ccCCCccccchh
Q 042962 242 VPCKNLKKLKLC 253 (377)
Q Consensus 242 ~~~~~L~~L~L~ 253 (377)
..+.+|++|.+.
T Consensus 639 ~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 639 LELQSLRVLRLP 650 (889)
T ss_pred hhcccccEEEee
Confidence 346667666554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.57 E-value=0.038 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.074 Sum_probs=16.0
Q ss_pred ccCcccEEEeccccccCC---CCCCCCCCCCeeeccce
Q 042962 131 YAKSMSLLGLDSCKLESP---RGNVTLSCLRELRPRHV 165 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p---~~~~~l~~L~~L~L~~~ 165 (377)
.|+.|+.|.|..|.+... ..+.++|+|++|.|..|
T Consensus 61 rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 455555555554443211 12344555555555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.80 E-value=0.46 Score=37.99 Aligned_cols=13 Identities=15% Similarity=-0.056 Sum_probs=4.4
Q ss_pred CCCCCCCCeeecc
Q 042962 151 NVTLSCLRELRPR 163 (377)
Q Consensus 151 ~~~l~~L~~L~L~ 163 (377)
+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344445544443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=0.15 Score=44.51 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCCCCCCeeecccee-eChHHHHHHhcCCcccccccccccccc
Q 042962 151 NVTLSCLRELRPRHVC-ADDQVIKDLISGCPLIEFISIISCRGL 193 (377)
Q Consensus 151 ~~~l~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~~l 193 (377)
+.++++++.|.+.+|. +++..++.+-...|+||.|.|++|..+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 3455556666666653 355555554444556666666655433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.51 E-value=0.12 Score=45.06 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCeeeccceeeChHHHHHHhcCCccccccccccccccee-----eccCCCCCCcEEEEcccCCCchh----hhcCCcccE
Q 042962 157 LRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKH-----LELPNLGKLKEFKVYDEYGLEQV----YIQGMNAHS 227 (377)
Q Consensus 157 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~-----l~i~~l~~L~~L~i~~~~~~~~~----~~~~p~L~~ 227 (377)
++.++-+++.+....++. +.+++.++.|.+.+|..+.. +.-. .++|+.|+|++|..+..- ....++|+.
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~-~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGL-APSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhccc-ccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 444555555555566776 67888899999988854432 2222 388999999998833322 134577777
Q ss_pred EEEec
Q 042962 228 VHIIG 232 (377)
Q Consensus 228 L~l~g 232 (377)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77754
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.45 E-value=0.68 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=9.4
Q ss_pred cccEEEecccccc
Q 042962 134 SMSLLGLDSCKLE 146 (377)
Q Consensus 134 ~L~~L~L~~~~~~ 146 (377)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888763
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.50 E-value=0.49 Score=43.32 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=49.8
Q ss_pred ccccCcccEEEeccccccCC------CCCCCCCCCCeeeccceee---ChHHHH------HHhcCCccccccccccc-cc
Q 042962 129 VFYAKSMSLLGLDSCKLESP------RGNVTLSCLRELRPRHVCA---DDQVIK------DLISGCPLIEFISIISC-RG 192 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p------~~~~~l~~L~~L~L~~~~~---~~~~l~------~l~~~cp~Le~L~L~~c-~~ 192 (377)
+....+++.++|+||.+..- ..+.+-.+|+..+++.... .++... ..+..||.|+..+|+.. -+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 33467888899999887432 1234455666666665522 122222 23567888888888865 22
Q ss_pred ceee-----ccCCCCCCcEEEEcccC
Q 042962 193 LKHL-----ELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 193 l~~l-----~i~~l~~L~~L~i~~~~ 213 (377)
.+.. -|++...|++|.+.+|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 2111 23333678888888776
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.66 E-value=1.2 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=12.8
Q ss_pred CCCCeeeccceeeChHHHHH
Q 042962 155 SCLRELRPRHVCADDQVIKD 174 (377)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ 174 (377)
++|++|+|++|.++++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 57788888888776666554
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.23 E-value=0.42 Score=39.38 Aligned_cols=55 Identities=9% Similarity=0.179 Sum_probs=24.1
Q ss_pred cccEEEecccccc-CCCCC-CCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 134 SMSLLGLDSCKLE-SPRGN-VTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 134 ~L~~L~L~~~~~~-~p~~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.|+..+|++|.|. .|+.+ ..|+.+++|+|.++.+.+- ++. ++..|.|+.|++...
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE-~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEE-LAAMPALRSLNLRFN 110 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHH-HhhhHHhhhcccccC
Confidence 3444455555542 22222 2344555555555544211 111 445555555555544
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=80.13 E-value=1.5 Score=40.28 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred ceEEEEEEeccCCccchhhHHHHHHHHHhCCceEEEE-EeeCCCCCCCCCCcCCC-------ccccccCcccEEEecccc
Q 042962 73 LEKFTFIVQLSDDVKFVSSIYRCLRYAVETNVKELKL-GFCCPHSNYPDSYYNLP-------QLVFYAKSMSLLGLDSCK 144 (377)
Q Consensus 73 i~~l~l~~~~~~~~~~~~~i~~wi~~a~~~~v~~L~L-~~~~~~~~~~~~~~~lp-------~~l~~~~~L~~L~L~~~~ 144 (377)
+..+.++.. +. +....+|+...++ +++.|.+ +|+.-.. ....-.+| +.+..|+.|+..+|+.|.
T Consensus 32 ~~evdLSGN----ti-gtEA~e~l~~~ia-~~~~L~vvnfsd~ft--gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 32 LVEVDLSGN----TI-GTEAMEELCNVIA-NVRNLRVVNFSDAFT--GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred eeEEeccCC----cc-cHHHHHHHHHHHh-hhcceeEeehhhhhh--cccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 555555432 22 4566688887764 2444443 2221100 01112233 234467777777777766
Q ss_pred cc--CCCC----CCCCCCCCeeeccceee
Q 042962 145 LE--SPRG----NVTLSCLRELRPRHVCA 167 (377)
Q Consensus 145 ~~--~p~~----~~~l~~L~~L~L~~~~~ 167 (377)
|. .|+. +.+-..|++|.|.+|.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 52 2211 23345566666666644
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.05 E-value=0.86 Score=25.61 Aligned_cols=16 Identities=19% Similarity=0.723 Sum_probs=11.2
Q ss_pred Ccccccccccccccce
Q 042962 179 CPLIEFISIISCRGLK 194 (377)
Q Consensus 179 cp~Le~L~L~~c~~l~ 194 (377)
||+|+.|+|++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 6777777777776554
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=71.92 E-value=3.2 Score=20.82 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=6.3
Q ss_pred CCceEeccCCccce
Q 042962 261 KLRSIKISSFCLKS 274 (377)
Q Consensus 261 ~L~~L~i~~~~L~~ 274 (377)
+|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45666666665543
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=68.70 E-value=1.4 Score=36.35 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=40.1
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCcccc-ccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceee
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVF-YAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~ 167 (377)
++.+-..++++. .....+|..+- ..+.++.|+|++|.+ +.|.+++.++.|+.|++..|.+
T Consensus 51 ~~~el~~i~ls~------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSD------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEeccc------chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 454444455443 24455666543 345788888888876 5666788888888888888877
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.14 E-value=11 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCCCeeeccceeeChHHHHHH
Q 042962 155 SCLRELRPRHVCADDQVIKDL 175 (377)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~l 175 (377)
++|++|+|++|.+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 568888888888866555543
No 82
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=52.37 E-value=11 Score=28.78 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.8
Q ss_pred CCCCCCcHHHHHHHhhcCChhHH
Q 042962 13 DMISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 13 DriS~LPD~lL~~ILs~Lp~~da 35 (377)
..++.||-|+-..||++|+.+|.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL 92 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDL 92 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHH
Confidence 57899999999999999998874
No 83
>PF13013 F-box-like_2: F-box-like domain
Probab=46.46 E-value=13 Score=29.23 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=19.4
Q ss_pred CCCCCcHHHHHHHhhcCChhHH
Q 042962 14 MISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 14 riS~LPD~lL~~ILs~Lp~~da 35 (377)
.+.+||+||+..|+.+-...+.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l 42 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPIL 42 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHH
Confidence 4788999999999999987766
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=39.88 E-value=22 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCceEeccCCccceEE
Q 042962 260 MKLRSIKISSFCLKSFL 276 (377)
Q Consensus 260 ~~L~~L~i~~~~L~~l~ 276 (377)
++|+.|++++|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777776553
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=39.88 E-value=22 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCceEeccCCccceEE
Q 042962 260 MKLRSIKISSFCLKSFL 276 (377)
Q Consensus 260 ~~L~~L~i~~~~L~~l~ 276 (377)
++|+.|++++|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777776553
No 86
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=39.70 E-value=21 Score=34.54 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCCCCcHHHHHHHhhcCChhHH----------hhcC
Q 042962 14 MISALLAPILHHILSFLSIEQV----------WHSH 39 (377)
Q Consensus 14 riS~LPD~lL~~ILs~Lp~~da----------Wr~l 39 (377)
..|+||+|+|..|..+||.+-. ||..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a 38 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSS 38 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHh
Confidence 3789999999999999985443 8876
No 87
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=38.00 E-value=14 Score=35.05 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCCCCCCCc----HHHHHHHhhcCChhHH
Q 042962 11 NGDMISALL----APILHHILSFLSIEQV 35 (377)
Q Consensus 11 ~~DriS~LP----D~lL~~ILs~Lp~~da 35 (377)
..|-|+.|| |+|-..|||+|+..+.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sL 99 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSL 99 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhh
Confidence 458899999 9999999999998776
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.65 E-value=38 Score=19.10 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=11.3
Q ss_pred CCCceEeccCCccceE
Q 042962 260 MKLRSIKISSFCLKSF 275 (377)
Q Consensus 260 ~~L~~L~i~~~~L~~l 275 (377)
.+|+.|+++.|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677788888777654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.13 E-value=20 Score=36.18 Aligned_cols=77 Identities=8% Similarity=-0.030 Sum_probs=50.2
Q ss_pred CCCCCCCeeeccceee-ChHHHHHHhcCCcccccccccccccc--ee---eccCCCCCCcEEEEcccCC----------C
Q 042962 152 VTLSCLRELRPRHVCA-DDQVIKDLISGCPLIEFISIISCRGL--KH---LELPNLGKLKEFKVYDEYG----------L 215 (377)
Q Consensus 152 ~~l~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~L~~c~~l--~~---l~i~~l~~L~~L~i~~~~~----------~ 215 (377)
.+++.+..++|++|++ .-+.+..+....|+|..|+|+...+. .. -.+.+ ..|++|.+.++.. +
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHH
Confidence 4677888888888887 55667777778899999999876211 11 12222 6788888888761 1
Q ss_pred chhhhcCCcccEEE
Q 042962 216 EQVYIQGMNAHSVH 229 (377)
Q Consensus 216 ~~~~~~~p~L~~L~ 229 (377)
..+.-..|.|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 22333467776665
No 90
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.85 E-value=20 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=18.7
Q ss_pred CCCCcHHHHHHHhhcCChhHHhhcCC
Q 042962 15 ISALLAPILHHILSFLSIEQVWHSHP 40 (377)
Q Consensus 15 iS~LPD~lL~~ILs~Lp~~daWr~l~ 40 (377)
.++|.+.+|.+|...| |++|+++|
T Consensus 13 ~~ql~ESLLdrItRkl--r~gwKRl~ 36 (45)
T PF02061_consen 13 CPQLSESLLDRITRKL--RDGWKRLW 36 (45)
T ss_pred CchhhHHHHHHHHHHH--HHHHHHHH
Confidence 5678899999998764 56699884
No 91
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.86 E-value=32 Score=32.39 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHhhcC
Q 042962 13 DMISALLAPILHHILSFL 30 (377)
Q Consensus 13 DriS~LPD~lL~~ILs~L 30 (377)
+-|+.||||||.+||...
T Consensus 105 ~~~~~LPdEvLm~I~~~v 122 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWV 122 (366)
T ss_pred hhhhhCCHHHHHHHHHHH
Confidence 457899999999998754
No 92
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=24.74 E-value=51 Score=19.37 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=8.0
Q ss_pred eEEEEEeeCCCccc
Q 042962 360 TLLMMCIQNDCDYE 373 (377)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (377)
.+..+|....||||
T Consensus 22 ikvfrcsnpacdye 35 (36)
T PF09151_consen 22 IKVFRCSNPACDYE 35 (36)
T ss_dssp EEEEEES-TT---E
T ss_pred EEEEEcCCCccccC
Confidence 46789999999997
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=24.37 E-value=41 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=9.4
Q ss_pred CCceEeccCCccceE
Q 042962 261 KLRSIKISSFCLKSF 275 (377)
Q Consensus 261 ~L~~L~i~~~~L~~l 275 (377)
+|+.|.+++|+|+.|
T Consensus 3 ~L~~L~vs~N~Lt~L 17 (26)
T smart00364 3 SLKELNVSNNQLTSL 17 (26)
T ss_pred ccceeecCCCccccC
Confidence 466667777766543
Done!