Query 042962
Match_columns 377
No_of_seqs 304 out of 2444
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.7 3.1E-17 1.1E-21 154.7 6.9 215 12-270 6-257 (336)
2 3ogk_B Coronatine-insensitive 99.6 8.7E-16 3E-20 155.8 5.6 62 130-191 161-231 (592)
3 4fcg_A Uncharacterized protein 99.6 2.1E-14 7.1E-19 135.5 12.7 211 94-320 73-311 (328)
4 2p1m_B Transport inhibitor res 99.5 2.1E-14 7.3E-19 145.5 10.5 173 12-190 3-221 (594)
5 1ogq_A PGIP-2, polygalacturona 99.4 3.7E-13 1.3E-17 126.0 8.9 190 124-321 92-302 (313)
6 1ogq_A PGIP-2, polygalacturona 99.4 8.5E-13 2.9E-17 123.5 7.7 208 102-322 50-280 (313)
7 3zyi_A Leucine-rich repeat-con 99.3 3.5E-12 1.2E-16 125.4 10.4 188 126-321 92-301 (452)
8 4fmz_A Internalin; leucine ric 99.3 1E-11 3.5E-16 117.4 12.4 175 102-290 66-252 (347)
9 3bz5_A Internalin-J, INLJ; leu 99.3 6.5E-12 2.2E-16 123.8 11.0 157 130-294 82-246 (457)
10 1ozn_A Reticulon 4 receptor; N 99.3 6.2E-12 2.1E-16 115.7 10.0 193 121-322 22-237 (285)
11 3t6q_A CD180 antigen; protein- 99.3 2.7E-12 9.1E-17 130.6 7.9 74 200-273 374-462 (606)
12 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.8E-16 115.7 11.4 177 102-292 41-228 (308)
13 4fcg_A Uncharacterized protein 99.3 3.4E-12 1.2E-16 120.2 7.9 200 72-288 82-308 (328)
14 3zyj_A Leucine-rich repeat-con 99.3 4.8E-12 1.6E-16 123.9 9.0 186 128-322 83-291 (440)
15 2z80_A TOLL-like receptor 2, v 99.3 4.7E-12 1.6E-16 120.2 8.7 165 102-275 52-237 (353)
16 3rgz_A Protein brassinosteroid 99.3 5.1E-12 1.7E-16 132.4 9.1 66 124-190 409-476 (768)
17 4fmz_A Internalin; leucine ric 99.3 2.5E-11 8.6E-16 114.6 13.1 206 102-320 44-275 (347)
18 3v47_A TOLL-like receptor 5B a 99.3 6.9E-12 2.4E-16 122.9 8.3 50 241-290 295-356 (455)
19 3rgz_A Protein brassinosteroid 99.3 6.9E-12 2.4E-16 131.4 8.4 109 124-233 433-548 (768)
20 2id5_A Lingo-1, leucine rich r 99.2 2.5E-11 8.5E-16 119.9 11.4 188 128-322 123-332 (477)
21 3bz5_A Internalin-J, INLJ; leu 99.2 2.1E-11 7.1E-16 120.2 10.6 174 102-294 85-267 (457)
22 3o6n_A APL1; leucine-rich repe 99.2 1.7E-11 6E-16 117.8 9.8 85 128-213 88-176 (390)
23 3zyj_A Leucine-rich repeat-con 99.2 2.3E-11 7.9E-16 119.1 10.7 192 121-321 54-266 (440)
24 3zyi_A Leucine-rich repeat-con 99.2 2.3E-11 8E-16 119.4 10.7 192 121-321 65-277 (452)
25 2z66_A Variable lymphocyte rec 99.2 4.2E-12 1.4E-16 118.0 4.8 94 222-321 149-259 (306)
26 3v47_A TOLL-like receptor 5B a 99.2 4.3E-11 1.5E-15 117.2 12.2 86 128-213 74-165 (455)
27 2id5_A Lingo-1, leucine rich r 99.2 2E-11 6.8E-16 120.6 9.5 189 126-321 73-307 (477)
28 3oja_A Leucine-rich immune mol 99.2 1.4E-11 4.8E-16 122.4 8.3 199 103-323 35-250 (487)
29 1o6v_A Internalin A; bacterial 99.2 6.7E-11 2.3E-15 116.6 12.9 183 130-322 65-277 (466)
30 1xku_A Decorin; proteoglycan, 99.2 3.2E-11 1.1E-15 113.4 9.8 164 126-294 93-276 (330)
31 1xku_A Decorin; proteoglycan, 99.2 4.3E-11 1.5E-15 112.4 10.7 185 124-321 66-274 (330)
32 3rfs_A Internalin B, repeat mo 99.2 1.9E-11 6.5E-16 111.9 8.0 160 128-292 58-233 (272)
33 1o6v_A Internalin A; bacterial 99.2 6.7E-11 2.3E-15 116.6 12.2 182 129-322 108-299 (466)
34 3oja_B Anopheles plasmodium-re 99.2 3.3E-11 1.1E-15 122.6 9.6 85 128-213 94-182 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.2 4.4E-11 1.5E-15 121.5 10.3 122 131-253 326-456 (606)
36 2ast_B S-phase kinase-associat 99.2 1.2E-11 4E-16 116.3 5.6 169 93-271 37-233 (336)
37 1p9a_G Platelet glycoprotein I 99.2 7.9E-11 2.7E-15 109.0 11.1 181 131-322 8-207 (290)
38 1h6u_A Internalin H; cell adhe 99.2 7.9E-11 2.7E-15 109.8 10.6 140 129-273 81-230 (308)
39 3o53_A Protein LRIM1, AGAP0063 99.2 5.2E-11 1.8E-15 111.4 9.4 212 90-323 20-250 (317)
40 1ozn_A Reticulon 4 receptor; N 99.2 3.2E-11 1.1E-15 110.9 7.6 182 102-292 32-236 (285)
41 2z66_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 110.6 8.8 194 121-322 18-235 (306)
42 3o6n_A APL1; leucine-rich repe 99.2 9.2E-11 3.1E-15 112.8 10.7 209 102-321 45-283 (390)
43 3oja_B Anopheles plasmodium-re 99.2 3.9E-11 1.3E-15 122.1 8.3 168 123-292 112-312 (597)
44 2z63_A TOLL-like receptor 4, v 99.2 7.8E-11 2.7E-15 118.6 10.4 205 102-322 282-530 (570)
45 2z62_A TOLL-like receptor 4, v 99.2 7.3E-11 2.5E-15 108.0 8.9 192 121-322 18-236 (276)
46 2o6q_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 105.7 10.4 178 121-322 27-217 (270)
47 3rfs_A Internalin B, repeat mo 99.1 1.2E-10 3.9E-15 106.6 9.7 169 130-321 38-216 (272)
48 2ft3_A Biglycan; proteoglycan, 99.1 2.4E-10 8.2E-15 107.4 11.6 106 124-233 47-157 (332)
49 2z80_A TOLL-like receptor 2, v 99.1 1.4E-11 4.6E-16 117.0 2.7 151 121-274 42-212 (353)
50 3vq2_A TLR4, TOLL-like recepto 99.1 1E-10 3.6E-15 118.8 9.3 140 129-272 281-436 (606)
51 4eco_A Uncharacterized protein 99.1 1E-10 3.5E-15 119.9 8.9 147 125-273 239-415 (636)
52 3oja_A Leucine-rich immune mol 99.1 6.2E-11 2.1E-15 117.7 6.6 188 123-322 20-226 (487)
53 3t6q_A CD180 antigen; protein- 99.1 1.7E-10 5.7E-15 117.3 9.8 170 124-293 292-512 (606)
54 2z62_A TOLL-like receptor 4, v 99.1 1.1E-10 3.9E-15 106.7 7.3 183 102-293 28-236 (276)
55 1wwl_A Monocyte differentiatio 99.1 9.1E-11 3.1E-15 109.5 6.4 185 131-322 93-308 (312)
56 1h6t_A Internalin B; cell adhe 99.1 2.1E-10 7.1E-15 106.1 8.6 140 129-273 64-213 (291)
57 4ecn_A Leucine-rich repeat pro 99.1 1.3E-10 4.5E-15 122.7 7.5 12 310-321 697-708 (876)
58 4glp_A Monocyte differentiatio 99.1 1.5E-10 5.1E-15 107.9 7.0 206 90-322 79-306 (310)
59 3o53_A Protein LRIM1, AGAP0063 99.0 2.2E-10 7.4E-15 107.2 7.3 179 131-321 32-225 (317)
60 2ft3_A Biglycan; proteoglycan, 99.0 1.8E-10 6.1E-15 108.3 6.6 72 223-294 193-277 (332)
61 1m9s_A Internalin B; cell inva 99.0 3.4E-10 1.2E-14 115.2 8.3 165 102-280 43-217 (605)
62 3j0a_A TOLL-like receptor 5; m 99.0 2.3E-09 7.7E-14 113.5 14.7 62 128-190 43-107 (844)
63 4eco_A Uncharacterized protein 99.0 8.1E-10 2.8E-14 113.3 10.9 191 122-322 365-599 (636)
64 2z81_A CD282 antigen, TOLL-lik 99.0 2.1E-10 7.2E-15 115.0 6.3 206 102-321 26-262 (549)
65 2o6q_A Variable lymphocyte rec 99.0 8.2E-10 2.8E-14 100.7 9.7 162 102-272 37-217 (270)
66 4ecn_A Leucine-rich repeat pro 99.0 5E-10 1.7E-14 118.3 8.8 146 125-272 481-656 (876)
67 3m19_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 98.5 9.8 150 121-273 25-192 (251)
68 1ziw_A TOLL-like receptor 3; i 99.0 4.9E-10 1.7E-14 115.4 7.9 41 150-190 400-440 (680)
69 1h6t_A Internalin B; cell adhe 99.0 1.1E-09 3.7E-14 101.3 9.4 158 130-292 43-211 (291)
70 2z63_A TOLL-like receptor 4, v 99.0 6.5E-10 2.2E-14 111.8 8.2 124 125-253 274-404 (570)
71 4ezg_A Putative uncharacterize 99.0 7.8E-10 2.7E-14 96.0 7.6 39 129-167 62-100 (197)
72 1wwl_A Monocyte differentiatio 99.0 3.1E-10 1.1E-14 105.9 5.3 190 96-293 89-308 (312)
73 3j0a_A TOLL-like receptor 5; m 99.0 1.3E-09 4.3E-14 115.4 10.4 130 121-253 15-156 (844)
74 2xwt_C Thyrotropin receptor; s 99.0 8.1E-10 2.8E-14 98.8 7.7 167 122-293 23-217 (239)
75 4glp_A Monocyte differentiatio 99.0 5E-10 1.7E-14 104.3 6.1 170 102-292 117-305 (310)
76 2z81_A CD282 antigen, TOLL-lik 99.0 1E-09 3.5E-14 110.0 8.7 147 127-273 68-236 (549)
77 2xwt_C Thyrotropin receptor; s 98.9 7.8E-10 2.7E-14 98.9 6.6 176 102-288 31-233 (239)
78 1m9s_A Internalin B; cell inva 98.9 1E-09 3.4E-14 111.7 8.0 125 124-253 79-205 (605)
79 1ziw_A TOLL-like receptor 3; i 98.9 7E-10 2.4E-14 114.3 6.8 190 126-322 398-621 (680)
80 2z7x_B TOLL-like receptor 1, v 98.9 2.6E-08 8.9E-13 99.1 17.6 138 152-292 321-479 (520)
81 4ezg_A Putative uncharacterize 98.9 1.4E-09 4.8E-14 94.4 6.7 101 130-233 41-146 (197)
82 3m19_A Variable lymphocyte rec 98.9 2.1E-09 7.3E-14 96.9 8.1 167 133-322 14-191 (251)
83 3ogk_B Coronatine-insensitive 98.9 4.3E-09 1.5E-13 106.4 9.3 20 16-35 14-34 (592)
84 1xeu_A Internalin C; cellular 98.8 4.2E-09 1.4E-13 95.8 7.2 138 129-273 37-185 (263)
85 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.1E-07 3.7E-12 95.8 17.8 37 256-292 469-508 (562)
86 2o6s_A Variable lymphocyte rec 98.8 2.4E-09 8.2E-14 93.6 4.5 151 121-292 18-176 (208)
87 3g06_A SSPH2 (leucine-rich rep 98.8 2.9E-08 9.9E-13 101.2 12.8 53 102-167 61-113 (622)
88 3g06_A SSPH2 (leucine-rich rep 98.8 2.5E-08 8.7E-13 101.6 12.1 59 123-190 53-111 (622)
89 2ca6_A RAN GTPase-activating p 98.8 7.6E-10 2.6E-14 106.2 0.8 38 130-167 91-134 (386)
90 4ay9_X Follicle-stimulating ho 98.8 1.9E-08 6.5E-13 95.3 9.3 32 256-287 198-229 (350)
91 1p9a_G Platelet glycoprotein I 98.8 7.5E-09 2.6E-13 95.6 6.3 148 122-275 22-187 (290)
92 2z7x_B TOLL-like receptor 1, v 98.7 1.5E-08 5.1E-13 100.9 7.8 231 72-323 221-481 (520)
93 2ca6_A RAN GTPase-activating p 98.7 1.3E-09 4.3E-14 104.7 -0.2 218 102-324 32-317 (386)
94 2p1m_B Transport inhibitor res 98.7 1.9E-09 6.6E-14 108.9 0.8 187 130-322 286-518 (594)
95 3cvr_A Invasion plasmid antige 98.7 4.3E-08 1.5E-12 98.9 10.4 172 99-293 56-242 (571)
96 1xeu_A Internalin C; cellular 98.7 2.3E-09 7.9E-14 97.6 0.7 152 131-289 17-180 (263)
97 1jl5_A Outer protein YOPM; leu 98.7 1.2E-07 4E-12 93.2 12.2 112 133-253 131-245 (454)
98 2ell_A Acidic leucine-rich nuc 98.7 1.8E-08 6E-13 84.9 5.2 103 102-213 24-131 (168)
99 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 4.3E-08 1.5E-12 98.7 8.6 139 178-323 351-510 (562)
100 1jl5_A Outer protein YOPM; leu 98.6 2.4E-07 8.2E-12 91.0 12.6 131 133-274 111-251 (454)
101 2je0_A Acidic leucine-rich nuc 98.6 1.5E-08 5.3E-13 83.4 3.5 66 124-190 33-98 (149)
102 2v70_A SLIT-2, SLIT homolog 2 98.6 4.6E-08 1.6E-12 86.4 6.2 136 121-273 22-166 (220)
103 3e6j_A Variable lymphocyte rec 98.6 5.9E-08 2E-12 86.2 6.8 136 121-273 30-172 (229)
104 4g8a_A TOLL-like receptor 4; l 98.6 6.3E-08 2.2E-12 98.1 7.8 116 201-322 444-579 (635)
105 4g8a_A TOLL-like receptor 4; l 98.6 8.4E-08 2.9E-12 97.2 8.4 129 121-253 42-181 (635)
106 3goz_A Leucine-rich repeat-con 98.6 3.2E-09 1.1E-13 101.0 -1.9 58 133-190 80-148 (362)
107 2o6s_A Variable lymphocyte rec 98.6 7.8E-08 2.7E-12 83.8 6.7 138 136-291 10-158 (208)
108 3goz_A Leucine-rich repeat-con 98.6 1.4E-08 4.8E-13 96.6 2.0 214 102-323 22-297 (362)
109 2ell_A Acidic leucine-rich nuc 98.6 3.2E-08 1.1E-12 83.3 4.0 99 132-233 23-130 (168)
110 3cvr_A Invasion plasmid antige 98.6 1.3E-07 4.4E-12 95.4 9.0 168 132-322 58-242 (571)
111 3e6j_A Variable lymphocyte rec 98.6 1.1E-07 3.8E-12 84.4 7.6 140 134-292 20-170 (229)
112 2v9t_B SLIT homolog 2 protein 98.5 9.7E-08 3.3E-12 84.3 6.7 136 121-273 22-165 (220)
113 2je0_A Acidic leucine-rich nuc 98.5 9.2E-08 3.2E-12 78.7 5.9 118 132-252 16-147 (149)
114 1z7x_W Ribonuclease inhibitor; 98.5 5E-09 1.7E-13 102.6 -2.5 238 72-321 4-295 (461)
115 2xot_A Amphoterin-induced prot 98.5 1.1E-07 3.7E-12 90.5 5.6 129 121-253 29-171 (361)
116 2v9t_B SLIT homolog 2 protein 98.5 1.7E-07 5.7E-12 82.8 6.3 140 136-292 14-163 (220)
117 1a9n_A U2A', U2A'; complex (nu 98.5 7.3E-08 2.5E-12 81.8 3.4 101 129-233 15-123 (176)
118 2v70_A SLIT-2, SLIT homolog 2 98.4 3.2E-07 1.1E-11 80.9 6.8 96 136-233 14-115 (220)
119 3e4g_A ATP synthase subunit S, 98.3 2.7E-07 9.2E-12 78.3 4.0 93 122-214 50-151 (176)
120 1z7x_W Ribonuclease inhibitor; 98.3 6.8E-08 2.3E-12 94.4 -0.0 195 125-322 162-410 (461)
121 1w8a_A SLIT protein; signaling 98.3 7.5E-07 2.6E-11 76.7 5.6 90 121-213 19-113 (192)
122 2wfh_A SLIT homolog 2 protein 98.3 8.1E-07 2.8E-11 76.7 5.4 66 122-190 22-88 (193)
123 1ds9_A Outer arm dynein; leuci 98.3 1.8E-08 6.3E-13 87.3 -5.2 109 122-234 37-151 (198)
124 2xot_A Amphoterin-induced prot 98.3 5.2E-07 1.8E-11 85.7 4.5 138 135-276 20-179 (361)
125 3sb4_A Hypothetical leucine ri 98.2 6.8E-07 2.3E-11 83.7 4.5 161 132-295 100-311 (329)
126 1a9n_A U2A', U2A'; complex (nu 98.2 2.7E-07 9.2E-12 78.3 1.0 125 149-289 13-148 (176)
127 1dce_A Protein (RAB geranylger 98.2 1.8E-06 6E-11 87.2 6.8 63 124-190 455-518 (567)
128 2o6r_A Variable lymphocyte rec 98.2 3.3E-06 1.1E-10 71.4 7.1 66 122-190 19-86 (177)
129 1dce_A Protein (RAB geranylger 98.1 2.5E-06 8.6E-11 86.0 5.9 75 135-213 443-519 (567)
130 1w8a_A SLIT protein; signaling 98.0 2.1E-06 7.2E-11 73.9 3.6 122 136-273 11-139 (192)
131 2wfh_A SLIT homolog 2 protein 98.0 5.1E-06 1.8E-10 71.6 5.8 102 102-213 31-137 (193)
132 4ay9_X Follicle-stimulating ho 98.0 8.7E-06 3E-10 76.8 7.8 174 121-296 20-217 (350)
133 3un9_A NLR family member X1; l 98.0 3.5E-07 1.2E-11 87.4 -2.0 58 133-190 101-165 (372)
134 3sb4_A Hypothetical leucine ri 98.0 4.4E-06 1.5E-10 78.1 5.6 69 243-320 224-307 (329)
135 4fdw_A Leucine rich hypothetic 97.9 2.1E-05 7.3E-10 75.7 8.6 32 256-288 296-330 (401)
136 4fdw_A Leucine rich hypothetic 97.9 2.2E-05 7.5E-10 75.6 8.6 154 131-293 178-357 (401)
137 1ds9_A Outer arm dynein; leuci 97.9 3.8E-07 1.3E-11 78.9 -3.8 107 150-274 43-154 (198)
138 3g39_A Variable lymphocyte rec 97.9 1.4E-05 4.8E-10 67.2 5.5 90 121-213 20-113 (170)
139 2r9u_A Variable lymphocyte rec 97.8 1.9E-05 6.6E-10 66.8 5.8 66 122-190 24-91 (174)
140 4b8c_D Glucose-repressible alc 97.8 1.1E-05 3.7E-10 83.8 4.3 102 149-253 218-324 (727)
141 4b8c_D Glucose-repressible alc 97.8 6E-06 2.1E-10 85.7 2.3 105 126-233 217-326 (727)
142 2ra8_A Uncharacterized protein 97.8 9.8E-06 3.3E-10 77.0 3.5 102 172-274 164-293 (362)
143 2o6r_A Variable lymphocyte rec 97.8 2.5E-05 8.5E-10 65.9 5.3 124 134-273 8-137 (177)
144 2ra8_A Uncharacterized protein 97.7 2.1E-05 7.1E-10 74.7 4.4 204 56-273 94-320 (362)
145 3g39_A Variable lymphocyte rec 97.6 6.3E-05 2.2E-09 63.2 4.8 76 134-213 10-89 (170)
146 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.3E-10 67.4 0.9 84 148-233 54-149 (176)
147 2r9u_A Variable lymphocyte rec 97.5 9E-05 3.1E-09 62.6 4.9 75 135-213 14-92 (174)
148 3un9_A NLR family member X1; l 97.4 2E-05 6.9E-10 75.1 -0.3 103 132-234 71-194 (372)
149 2ifg_A High affinity nerve gro 97.3 0.00013 4.6E-09 68.2 4.3 89 121-213 20-114 (347)
150 1fs1_A SKP2 F-BOX, cyclin A/CD 97.2 0.00014 4.9E-09 48.4 2.5 28 12-39 6-42 (53)
151 1io0_A Tropomodulin; LRR prote 96.9 0.00025 8.4E-09 60.5 1.5 38 153-190 63-103 (185)
152 2ifg_A High affinity nerve gro 96.9 0.00055 1.9E-08 64.0 4.0 95 137-234 12-114 (347)
153 4fs7_A Uncharacterized protein 96.6 0.0068 2.3E-07 57.7 9.2 177 131-320 160-376 (394)
154 4fs7_A Uncharacterized protein 96.5 0.0025 8.6E-08 60.7 5.5 69 220-289 294-374 (394)
155 1io0_A Tropomodulin; LRR prote 96.3 0.002 6.9E-08 54.7 3.2 112 152-272 33-163 (185)
156 4gt6_A Cell surface protein; l 95.2 0.011 3.6E-07 56.3 3.5 90 200-290 263-366 (394)
157 3rw6_A Nuclear RNA export fact 95.1 0.0079 2.7E-07 54.3 2.3 40 128-167 191-232 (267)
158 3rw6_A Nuclear RNA export fact 94.9 0.0064 2.2E-07 54.9 1.1 76 153-229 168-257 (267)
159 4gt6_A Cell surface protein; l 94.9 0.027 9.3E-07 53.4 5.5 70 221-290 309-387 (394)
160 3l2o_B F-box only protein 4; s 94.8 0.0073 2.5E-07 54.8 1.1 21 15-35 5-25 (312)
161 2e31_A FBS1, F-box only protei 94.3 0.017 5.9E-07 52.6 2.3 23 13-35 49-71 (297)
162 4h09_A Hypothetical leucine ri 94.0 0.036 1.2E-06 52.1 3.9 140 131-275 192-347 (379)
163 3v7d_B Cell division control p 91.6 0.037 1.3E-06 53.0 0.4 26 10-35 10-35 (464)
164 4h09_A Hypothetical leucine ri 90.6 0.47 1.6E-05 44.3 7.0 18 257-274 283-300 (379)
165 2ovr_B FBW7, F-BOX/WD repeat p 90.4 0.14 4.9E-06 48.6 3.2 27 9-35 13-39 (445)
166 1p22_A F-BOX/WD-repeat protein 84.9 0.19 6.3E-06 47.8 0.2 26 10-35 6-35 (435)
167 1pgv_A TMD-1, tropomodulin TMD 80.8 0.47 1.6E-05 40.4 1.1 99 90-190 27-136 (197)
168 3rfe_A Platelet glycoprotein I 80.6 1.5 5E-05 34.4 3.9 42 124-167 24-67 (130)
169 1pgv_A TMD-1, tropomodulin TMD 70.3 2.7 9.2E-05 35.7 3.0 60 131-190 39-108 (197)
170 3rfe_A Platelet glycoprotein I 45.4 9.1 0.00031 29.7 1.9 48 137-188 12-63 (130)
171 2kwv_A RAD30 homolog B, DNA po 26.2 47 0.0016 20.7 2.4 19 11-29 17-35 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3.1e-17 Score=154.70 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=128.5
Q ss_pred CCCCCCCcHHHHHHHhhcCChhHH---------hhcCCCCCcCCcccCCCChhhHHHHHHHHhhcCCCcCceEEEEEEec
Q 042962 12 GDMISALLAPILHHILSFLSIEQV---------WHSHPGVECNGSLSMSPENTLKCLVKTLLNHYGDDFSLEKFTFIVQL 82 (377)
Q Consensus 12 ~DriS~LPD~lL~~ILs~Lp~~da---------Wr~l~~~~~~~~l~~~~~~~~~~v~~~L~~~~~~~~~i~~l~l~~~~ 82 (377)
...|++||||++.+||++|+.+|. |+.+. .++ ..++++.+...
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~--------------------------~~~-~~~~~l~l~~~- 57 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA--------------------------SDE-SLWQTLDLTGK- 57 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH--------------------------TCS-TTSSEEECTTC-
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh--------------------------cCc-hhheeeccccc-
Confidence 456899999999999999999998 55541 111 12444444211
Q ss_pred cCCccchhhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEecccccc---CCCCCCCCCCCCe
Q 042962 83 SDDVKFVSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLE---SPRGNVTLSCLRE 159 (377)
Q Consensus 83 ~~~~~~~~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---~p~~~~~l~~L~~ 159 (377)
.. . +..+......+++.+++... .....+..++.+++|++|+|++|.+. .+..+.++++|++
T Consensus 58 --~~--~---~~~~~~~~~~~l~~L~l~~n--------~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 58 --NL--H---PDVTGRLLSQGVIAFRCPRS--------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp --BC--C---HHHHHHHHHTTCSEEECTTC--------EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred --cC--C---HHHHHhhhhccceEEEcCCc--------cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 11 1 23344444566777765421 12233334556778888888877653 2334566778888
Q ss_pred eeccceeeChHHHHHHhcCCccccccccccccccee--e--ccCCCCCCcEEEEccc-C-C---CchhhhcCC-cccEEE
Q 042962 160 LRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKH--L--ELPNLGKLKEFKVYDE-Y-G---LEQVYIQGM-NAHSVH 229 (377)
Q Consensus 160 L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~--l--~i~~l~~L~~L~i~~~-~-~---~~~~~~~~p-~L~~L~ 229 (377)
|+|++|.+++..+.. ++.|++|++|++++|..+.. + .+.++++|++|.+.+| . . +......+| +|++|+
T Consensus 123 L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 888888776665554 56688888888887754432 1 1223577888888877 4 1 233344567 788888
Q ss_pred Eeccc-----cCCceeeccCCCccccchh----------hhccCCCCCceEeccCC
Q 042962 230 IIGLH-----MLPHISVVPCKNLKKLKLC----------QEIVDCMKLRSIKISSF 270 (377)
Q Consensus 230 l~g~~-----~~~~~~~~~~~~L~~L~L~----------~~l~~~~~L~~L~i~~~ 270 (377)
++++. ..++..+.++++|+.|+++ ..+.++++|+.|+++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 86653 1122234566777777665 22355566666666555
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=8.7e-16 Score=155.77 Aligned_cols=62 Identities=6% Similarity=0.039 Sum_probs=44.0
Q ss_pred cccCcccEEEeccccccCC------CCCCCCCCCCeeeccceeeC---hHHHHHHhcCCcccccccccccc
Q 042962 130 FYAKSMSLLGLDSCKLESP------RGNVTLSCLRELRPRHVCAD---DQVIKDLISGCPLIEFISIISCR 191 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p------~~~~~l~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~L~~c~ 191 (377)
..|++|++|+|++|.+... ....++++|++|++.++.++ ...+..++.+||+|+.|++++|.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 3677888888888765321 11245778888888887764 56677777888888888888773
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=2.1e-14 Score=135.53 Aligned_cols=211 Identities=16% Similarity=0.077 Sum_probs=150.6
Q ss_pred HHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHH
Q 042962 94 RCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVI 172 (377)
Q Consensus 94 ~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l 172 (377)
.-+..+...+++.|++... ....+|..++.+++|++|+|++|.+ ..|..+.++++|++|+|++|.+. .+
T Consensus 73 ~~l~~~~~~~l~~L~L~~n--------~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~l 142 (328)
T 4fcg_A 73 DLLEDATQPGRVALELRSV--------PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--AL 142 (328)
T ss_dssp HHHHHHTSTTCCEEEEESS--------CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CC
T ss_pred HHHhcccccceeEEEccCC--------CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cC
Confidence 3344444578998888732 3458899999999999999999987 45667889999999999999885 23
Q ss_pred HHHhcCCcccccccccccccceeecc-----------CCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCc
Q 042962 173 KDLISGCPLIEFISIISCRGLKHLEL-----------PNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPH 238 (377)
Q Consensus 173 ~~l~~~cp~Le~L~L~~c~~l~~l~i-----------~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~ 238 (377)
..-+.++++|+.|++++|.....+.. .++++|+.|.+.+|. .++.....+++|++|+++++. ..++
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence 33478899999999999854433321 126899999999987 344444568899999998875 3445
Q ss_pred eeeccCCCccccchh---------hhccCCCCCceEeccCCccce-E--EccCcccccccccccCCcceEEEcccccccC
Q 042962 239 ISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKS-F--LFIGYDTLDELKLCTPNLSIFKYHGDLISFS 306 (377)
Q Consensus 239 ~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~-l--~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~ 306 (377)
..+..+++|++|+++ ..++++++|+.|++++|.+.. + .+.++++|+.+++..+++ .+.+|..
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~------~~~iP~~ 296 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN------LSRLPSL 296 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT------CCCCCGG
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc------hhhccHH
Confidence 557888889988887 235777888888888865443 2 245566677777666542 2445644
Q ss_pred ccc-cccceEEEEec
Q 042962 307 STA-LALSEIALVFN 320 (377)
Q Consensus 307 l~~-~~L~~l~l~~n 320 (377)
+.. ++++.+.+..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 443 56777766644
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.1e-14 Score=145.48 Aligned_cols=173 Identities=12% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCCCCCcHHHHHHHhhcCC-hhHH---------hhcCCCCCcCCcccCCCChhhHHHHHHHHhhcCCCcCceEEEEEEe
Q 042962 12 GDMISALLAPILHHILSFLS-IEQV---------WHSHPGVECNGSLSMSPENTLKCLVKTLLNHYGDDFSLEKFTFIVQ 81 (377)
Q Consensus 12 ~DriS~LPD~lL~~ILs~Lp-~~da---------Wr~l~~~~~~~~l~~~~~~~~~~v~~~L~~~~~~~~~i~~l~l~~~ 81 (377)
.|+|++||||||.+||+||| .+|+ |+.+... .+..+.+..-... ...+++.++ . .++++.++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~-~~~~l~~~~~~~~-~~~~~~~~~-~---~L~~L~L~~~ 76 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERW-CRRKVFIGNCYAV-SPATVIRRF-P---KVRSVELKGK 76 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHH-HCCEEEESSTTSS-CHHHHHHHC-T---TCCEEEEECS
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhh-hceEEeecccccc-CHHHHHhhC-C---CceEEeccCC
Confidence 49999999999999999999 8887 8877100 1222222110000 001122111 1 2566555542
Q ss_pred ccC-Cc-----cchhhHHHHHHHHHh--CCceEEEEEeeCCCC-------------C-----C--CCCCcCCCccccccC
Q 042962 82 LSD-DV-----KFVSSIYRCLRYAVE--TNVKELKLGFCCPHS-------------N-----Y--PDSYYNLPQLVFYAK 133 (377)
Q Consensus 82 ~~~-~~-----~~~~~i~~wi~~a~~--~~v~~L~L~~~~~~~-------------~-----~--~~~~~~lp~~l~~~~ 133 (377)
... +. .....+..|+..... .++++|++....-.. + . ......++..+..|+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 156 (594)
T 2p1m_B 77 PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156 (594)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT
T ss_pred CchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC
Confidence 100 00 001233445544432 345555554211000 0 0 000011223333678
Q ss_pred cccEEEeccccccCC------CCCCCCCCCCeeecccee--eChHHHHHHhcCCccccccccccc
Q 042962 134 SMSLLGLDSCKLESP------RGNVTLSCLRELRPRHVC--ADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 134 ~L~~L~L~~~~~~~p------~~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
+|++|+|++|.+... .....+++|++|+++++. +++..+..++.+||+|+.|++++|
T Consensus 157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 888888888775321 122367789999999885 677778888788999999998876
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=3.7e-13 Score=126.02 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=83.5
Q ss_pred CCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccc--eeeccC
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGL--KHLELP 199 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l--~~l~i~ 199 (377)
.+|..+..+++|++|+|++|.+. .|..+.++++|++|+|++|.+.+... ..+..+++|++|+++++.-. .+..+.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 34555555555555555555542 23344555555555555555432111 12344555555555554211 111222
Q ss_pred CCC-CCcEEEEcccC---CCchhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh--------hhccCCCCCceE
Q 042962 200 NLG-KLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC--------QEIVDCMKLRSI 265 (377)
Q Consensus 200 ~l~-~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~~L 265 (377)
.++ +|+.|.+.++. ..+......+ |++|+++++. +..+..+..+++|+.|+++ ..+..+++|+.|
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 249 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEE
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEE
Confidence 233 55555555554 1111111122 5555554442 2223334455555555554 123444555555
Q ss_pred eccCCccceE---EccCcccccccccccCCcceEEEcccccccCccccccceEEEEecC
Q 042962 266 KISSFCLKSF---LFIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNP 321 (377)
Q Consensus 266 ~i~~~~L~~l---~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~ 321 (377)
++++|.+... .+..+++|+.+.++.+++. +.+|.....++|+.+++..|+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC------GEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEE------EECCCSTTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCccc------ccCCCCccccccChHHhcCCC
Confidence 5555555421 1333444444444443321 223433222455555555444
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.36 E-value=8.5e-13 Score=123.52 Aligned_cols=208 Identities=14% Similarity=0.051 Sum_probs=148.9
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEecc-ccc--cCCCCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDS-CKL--ESPRGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
.+|++|++....- .....+|..+..+++|++|+|++ +.+ ..|..+.++++|++|+|+++.+.+.... .+.+
T Consensus 50 ~~l~~L~L~~~~l-----~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQ 123 (313)
T ss_dssp CCEEEEEEECCCC-----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGG
T ss_pred ceEEEEECCCCCc-----cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhC
Confidence 4678888763221 11226889999999999999995 665 3566788999999999999988533333 3778
Q ss_pred Ccccccccccccc--cceeeccCCCCCCcEEEEcccC---CCchhhhcCC-cccEEEEeccc--cCCceeeccCCCcccc
Q 042962 179 CPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY---GLEQVYIQGM-NAHSVHIIGLH--MLPHISVVPCKNLKKL 250 (377)
Q Consensus 179 cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~---~~~~~~~~~p-~L~~L~l~g~~--~~~~~~~~~~~~L~~L 250 (377)
+++|++|+++++. +..+-.+..+++|+.|.+.+|. ..+......+ +|++|+++++. +..+..+..++ |+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 9999999999884 2223345567999999999997 2233334455 89999998774 34455566666 8988
Q ss_pred chh---------hhccCCCCCceEeccCCccceE--EccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEE
Q 042962 251 KLC---------QEIVDCMKLRSIKISSFCLKSF--LFIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALV 318 (377)
Q Consensus 251 ~L~---------~~l~~~~~L~~L~i~~~~L~~l--~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~ 318 (377)
+++ ..+.++++|+.|+++.|.+... .+..+.+|+.+.++.+++. +.+|..+. .++|+.|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECC
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc------CcCChHHhcCcCCCEEECc
Confidence 887 3467899999999999988642 2445567788877776642 34554444 3789999999
Q ss_pred ecCC
Q 042962 319 FNPD 322 (377)
Q Consensus 319 ~n~~ 322 (377)
.|.-
T Consensus 277 ~N~l 280 (313)
T 1ogq_A 277 FNNL 280 (313)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 7743
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=3.5e-12 Score=125.39 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=118.9
Q ss_pred CccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee---ccCC
Q 042962 126 PQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPN 200 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~ 200 (377)
|..+..+++|+.|+|++|.+. .+..+.++++|++|+|++|.+..- ....+.++++|++|+++++. +..+ .+..
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 169 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence 344556777778888777652 224566777788888877766321 12235667778888887663 2222 2344
Q ss_pred CCCCcEEEEcccCCCch----hhhcCCcccEEEEeccccCCceeeccCCCccccchh---------hhccCCCCCceEec
Q 042962 201 LGKLKEFKVYDEYGLEQ----VYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKI 267 (377)
Q Consensus 201 l~~L~~L~i~~~~~~~~----~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i 267 (377)
+++|+.|++.+|..+.. ....+++|++|+++++.......+..+++|+.|+++ ..+.++++|+.|++
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 67788888877652222 123467788888876642212246677788888776 34677888888888
Q ss_pred cCCccceEE---ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecC
Q 042962 268 SSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNP 321 (377)
Q Consensus 268 ~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~ 321 (377)
++|.+..+. +.++.+|+.++++.+++..+. +..+. .++|+.++|+.|+
T Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCSSC
T ss_pred CCCcCceECHHHhcCCCCCCEEECCCCcCCccC------hHHhccccCCCEEEccCCC
Confidence 888887764 445667777777776654221 12222 3679999999886
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=1e-11 Score=117.37 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=99.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
.+++.|++.-. ....+|. +..+++|++|+|++|.+...+.+.++++|++|+++++.+.+- .. +..+++
T Consensus 66 ~~L~~L~l~~n--------~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~ 133 (347)
T 4fmz_A 66 TNLEYLNLNGN--------QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTK 133 (347)
T ss_dssp TTCCEEECCSS--------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTT
T ss_pred CCccEEEccCC--------ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCc
Confidence 45666666421 2334444 566777888888777765445667777788888877776321 11 567777
Q ss_pred cccccccccccceee-ccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh----
Q 042962 182 IEFISIISCRGLKHL-ELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC---- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l-~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~---- 253 (377)
|+.|++++|.....+ .+..+++|+.|.+.+|. .... ...+++|+.|+++++. ...+. +..+++|+.|++.
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC
Confidence 777777777433222 23445677777777766 2222 2356677777776553 11111 4555566655554
Q ss_pred ---hhccCCCCCceEeccCCccceEE-ccCccccccccccc
Q 042962 254 ---QEIVDCMKLRSIKISSFCLKSFL-FIGYDTLDELKLCT 290 (377)
Q Consensus 254 ---~~l~~~~~L~~L~i~~~~L~~l~-l~~c~~L~~l~l~~ 290 (377)
..+..+++|+.|++++|.+..+. +..+++|+.+.++.
T Consensus 212 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 212 TDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT 252 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCC
Confidence 12455566666666665554433 34444444444443
No 9
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.31 E-value=6.5e-12 Score=123.79 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=73.4
Q ss_pred cccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKV 209 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i 209 (377)
..+++|++|+|++|.+... .+.++++|++|++++|.+++- . ++.+++|+.|+++++. +..+.+..+++|+.|.+
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l 155 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDC 155 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEEC
T ss_pred ccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCc-cceeccccCCcCCEEEC
Confidence 3444444444444444222 144444455555554444221 1 3444555555554442 22223334455555555
Q ss_pred cccCCCchh-hhcCCcccEEEEeccc-cCCceeeccCCCccccchh------hhccCCCCCceEeccCCccceEEccCcc
Q 042962 210 YDEYGLEQV-YIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC------QEIVDCMKLRSIKISSFCLKSFLFIGYD 281 (377)
Q Consensus 210 ~~~~~~~~~-~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~------~~l~~~~~L~~L~i~~~~L~~l~l~~c~ 281 (377)
.+|.....+ ...+++|+.|+++++. ..++ +..+++|+.|+++ ..++++++|+.|++++|+++.+.++.++
T Consensus 156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~ 233 (457)
T 3bz5_A 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLT 233 (457)
T ss_dssp TTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred CCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccC
Confidence 555311111 1234555555554443 1222 4455555555554 1245556666666666666665555555
Q ss_pred cccccccccCCcc
Q 042962 282 TLDELKLCTPNLS 294 (377)
Q Consensus 282 ~L~~l~l~~~~L~ 294 (377)
+|+.+.++.+++.
T Consensus 234 ~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 234 QLTYFDCSVNPLT 246 (457)
T ss_dssp TCSEEECCSSCCS
T ss_pred CCCEEEeeCCcCC
Confidence 6666655555543
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.30 E-value=6.2e-12 Score=115.70 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=131.6
Q ss_pred CCcCCCccccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee--
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL-- 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l-- 196 (377)
....+|..+ .++|++|+|++|.+. .+ ..+..+++|++|+++++.+++-.. ..+.++++|++|+++++..+..+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCH
Confidence 345566543 468899999988863 23 357888999999999887743222 23677899999999887534333
Q ss_pred -ccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccc-cCCce-eeccCCCccccchh---------hhccCCCC
Q 042962 197 -ELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLH-MLPHI-SVVPCKNLKKLKLC---------QEIVDCMK 261 (377)
Q Consensus 197 -~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~-~~~~~-~~~~~~~L~~L~L~---------~~l~~~~~ 261 (377)
.+..+++|+.|.+.++. .. ......+++|++|+++++. ...+. .+..+++|++|+++ ..+.++++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 34456889999998887 22 2223457889999997764 22222 26678888888887 23677899
Q ss_pred CceEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCc-cccccceEEEEecCC
Q 042962 262 LRSIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFNPD 322 (377)
Q Consensus 262 L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n~~ 322 (377)
|+.|++++|.+.... +.++++|+.+.+..+++... .+..+ ..++|+.++++.|+-
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------CHHHHTTCTTCCEEECCSSCE
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC------CHHHcccCcccCEEeccCCCc
Confidence 999999999988763 45566788887777765431 11212 236799999987754
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=2.7e-12 Score=130.56 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCCCCcEEEEcccC--C-CchhhhcCCcccEEEEeccc--cCCc-eeeccCCCccccchh---------hhccCCCCCce
Q 042962 200 NLGKLKEFKVYDEY--G-LEQVYIQGMNAHSVHIIGLH--MLPH-ISVVPCKNLKKLKLC---------QEIVDCMKLRS 264 (377)
Q Consensus 200 ~l~~L~~L~i~~~~--~-~~~~~~~~p~L~~L~l~g~~--~~~~-~~~~~~~~L~~L~L~---------~~l~~~~~L~~ 264 (377)
.+++|+.|.+.+|. . .+.....+++|++|+++++. +..+ ..+..+++|+.|+++ ..++++++|+.
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 34555555555554 1 11112234555555554432 1111 114455556666554 22455566666
Q ss_pred EeccCCccc
Q 042962 265 IKISSFCLK 273 (377)
Q Consensus 265 L~i~~~~L~ 273 (377)
|++++|.+.
T Consensus 454 L~L~~n~l~ 462 (606)
T 3t6q_A 454 LNLQGNHFP 462 (606)
T ss_dssp EECTTCBCG
T ss_pred EECCCCCCC
Confidence 666665554
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.1e-11 Score=115.68 Aligned_cols=177 Identities=13% Similarity=0.051 Sum_probs=120.0
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
.++++|++... ....+| .+..+++|++|+|++|.+...+.+.++++|++|++++|.+.+- . -+..+++
T Consensus 41 ~~L~~L~l~~~--------~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGT--------GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQS 108 (308)
T ss_dssp HTCCEEECTTS--------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTT
T ss_pred CCcCEEEeeCC--------CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCC
Confidence 46777776421 233455 4677899999999999874333488899999999999988432 2 3778999
Q ss_pred cccccccccccceeeccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-----
Q 042962 182 IEFISIISCRGLKHLELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC----- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~----- 253 (377)
|+.|++++|.--....+..+++|+.|.+.+|. .... ...+++|+.|+++++. ...+. +..+++|+.|+++
T Consensus 109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC
Confidence 99999998842111235567899999999887 3333 3467889999997764 22222 6677777777776
Q ss_pred --hhccCCCCCceEeccCCccceE-EccCcccccccccccCC
Q 042962 254 --QEIVDCMKLRSIKISSFCLKSF-LFIGYDTLDELKLCTPN 292 (377)
Q Consensus 254 --~~l~~~~~L~~L~i~~~~L~~l-~l~~c~~L~~l~l~~~~ 292 (377)
..+.++++|+.|++++|.+..+ .+..+++|+.+.+..+.
T Consensus 187 ~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 2356677788888877777654 24445555555554443
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=3.4e-12 Score=120.24 Aligned_cols=200 Identities=15% Similarity=0.094 Sum_probs=139.0
Q ss_pred CceEEEEEEeccCCccchhhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEecccccc-CCCC
Q 042962 72 SLEKFTFIVQLSDDVKFVSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLE-SPRG 150 (377)
Q Consensus 72 ~i~~l~l~~~~~~~~~~~~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~~ 150 (377)
.++.+.+....-.. +...+.. -.+++.|++... ....+|..+..+++|++|+|++|.+. .|..
T Consensus 82 ~l~~L~L~~n~l~~------lp~~l~~--l~~L~~L~L~~n--------~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 82 GRVALELRSVPLPQ------FPDQAFR--LSHLQHMTIDAA--------GLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp TCCEEEEESSCCSS------CCSCGGG--GTTCSEEEEESS--------CCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ceeEEEccCCCchh------cChhhhh--CCCCCEEECCCC--------CccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 58888886532111 1111211 357899998732 23478998999999999999999874 5567
Q ss_pred CCCCCCCCeeeccceeeChHHHHHH--------hcCCcccccccccccccceee--ccCCCCCCcEEEEcccC--CCchh
Q 042962 151 NVTLSCLRELRPRHVCADDQVIKDL--------ISGCPLIEFISIISCRGLKHL--ELPNLGKLKEFKVYDEY--GLEQV 218 (377)
Q Consensus 151 ~~~l~~L~~L~L~~~~~~~~~l~~l--------~~~cp~Le~L~L~~c~~l~~l--~i~~l~~L~~L~i~~~~--~~~~~ 218 (377)
+.++++|++|+|++|.+.+.....+ +.++++|+.|++++|. +..+ .+..+++|+.|.+.+|. .++..
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 8899999999999986533222221 3359999999999884 2222 34457899999999998 34333
Q ss_pred hhcCCcccEEEEeccc--cCCceeeccCCCccccchh---------hhccCCCCCceEeccCCccceE---EccCccccc
Q 042962 219 YIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSF---LFIGYDTLD 284 (377)
Q Consensus 219 ~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l---~l~~c~~L~ 284 (377)
...+++|++|+++++. +.++..+.++++|++|+++ ..++++++|+.|++++|.+..- .++.+++++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 4568999999998864 4556668889999999987 3467888888888888765432 233444444
Q ss_pred cccc
Q 042962 285 ELKL 288 (377)
Q Consensus 285 ~l~l 288 (377)
.+.+
T Consensus 305 ~l~l 308 (328)
T 4fcg_A 305 IILV 308 (328)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 4433
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.29 E-value=4.8e-12 Score=123.92 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=101.3
Q ss_pred cccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCC
Q 042962 128 LVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGK 203 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~ 203 (377)
.+..+++|++|+|++|.+. .+ ..+.++++|++|+|++|.++.- ....+.++++|++|+++++. .+....+..+++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 3445566666666666542 11 2455566666666666655311 11224556666666666552 111112334566
Q ss_pred CcEEEEcccCCCch----hhhcCCcccEEEEeccc-cCCceeeccCCCccccchh---------hhccCCCCCceEeccC
Q 042962 204 LKEFKVYDEYGLEQ----VYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISS 269 (377)
Q Consensus 204 L~~L~i~~~~~~~~----~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~ 269 (377)
|+.|++.++..+.. ....+++|++|+++++. ..++ .+..+++|+.|+|+ ..+.++++|+.|++++
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 66666666441111 12245666777665553 2222 35566667777666 2456667777777777
Q ss_pred CccceEE---ccCcccccccccccCCcceEEEcccccc-cCcc-ccccceEEEEecCC
Q 042962 270 FCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLIS-FSST-ALALSEIALVFNPD 322 (377)
Q Consensus 270 ~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p-~~l~-~~~L~~l~l~~n~~ 322 (377)
|.++.+. +.++.+|+.++++.+++.. +| ..+. .++|+.++|+.|+-
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTL-------LPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCC-------CCTTTTSSCTTCCEEECCSSCE
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCc-------cChhHhccccCCCEEEcCCCCc
Confidence 7777653 3455566666666665532 22 2222 36789999988863
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=120.24 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=114.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCc-cccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQ-LVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
.++++|++.. .....+|. .+..+++|++|+|++|.+. . |..+.++++|++|++++|.+++- ....+.+
T Consensus 52 ~~L~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSN--------NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKP 122 (353)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTT
T ss_pred ccCcEEECCC--------CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCC
Confidence 3677777642 12334554 5678899999999998863 2 34578899999999999988532 2334678
Q ss_pred Ccccccccccccc--ccee-eccCCCCCCcEEEEcccCCC----chhhhcCCcccEEEEeccc--cCCceeeccCCCccc
Q 042962 179 CPLIEFISIISCR--GLKH-LELPNLGKLKEFKVYDEYGL----EQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKK 249 (377)
Q Consensus 179 cp~Le~L~L~~c~--~l~~-l~i~~l~~L~~L~i~~~~~~----~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~ 249 (377)
+++|++|+++++. .+.. -.+..+++|+.|.+.+|... ......+++|++|+++++. +..+..+..+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999873 2222 13445789999999988411 1223457889999997764 222444677888888
Q ss_pred cchh---------hhccCCCCCceEeccCCccceE
Q 042962 250 LKLC---------QEIVDCMKLRSIKISSFCLKSF 275 (377)
Q Consensus 250 L~L~---------~~l~~~~~L~~L~i~~~~L~~l 275 (377)
|+++ ..+..+++|+.|++++|.++..
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 8886 2235688999999988877653
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=5.1e-12 Score=132.43 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.+|..+..+++|++|+|++|.+. .|..+.++++|+.|++.+|.+.+..+.. +..+++|+.|++++|
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFN 476 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCC
Confidence 35556666666777766666552 2334555556666666655553222221 334455555555444
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=2.5e-11 Score=114.62 Aligned_cols=206 Identities=13% Similarity=0.085 Sum_probs=140.7
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
.+++++++.-. ....+|. +..+++|++|+|++|.+...+.+.++++|++|++++|.+.+ +. .+.++++
T Consensus 44 ~~L~~L~l~~~--------~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAGE--------KVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTN 111 (347)
T ss_dssp TTCSEEECCSS--------CCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTT
T ss_pred ccccEEEEeCC--------ccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCc
Confidence 56788887521 2344553 67899999999999987543348899999999999998843 22 3789999
Q ss_pred cccccccccccceeeccCCCCCCcEEEEcccC---CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh-----
Q 042962 182 IEFISIISCRGLKHLELPNLGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC----- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~----- 253 (377)
|++|++++|.-.....+..+++|+.|.+.+|. .... ...+++|++|.++++.......+..+++|+.|+++
T Consensus 112 L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 112 LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC
T ss_pred CCEEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc
Confidence 99999998842221225567999999999996 2222 35678999999987652212227788999999987
Q ss_pred --hhccCCCCCceEeccCCccceEE-ccCccccccccccc------------CCcceEEEcccccc---cCccccccceE
Q 042962 254 --QEIVDCMKLRSIKISSFCLKSFL-FIGYDTLDELKLCT------------PNLSIFKYHGDLIS---FSSTALALSEI 315 (377)
Q Consensus 254 --~~l~~~~~L~~L~i~~~~L~~l~-l~~c~~L~~l~l~~------------~~L~~~~~~~~~~p---~~l~~~~L~~l 315 (377)
..+.++++|+.++++.+.+.... +..+.+|+.+.++. ++|+.+...+..+. .....++|+.+
T Consensus 191 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 270 (347)
T 4fmz_A 191 DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKML 270 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEE
Confidence 33678899999999888766543 44555566555443 34444444332221 11122567777
Q ss_pred EEEec
Q 042962 316 ALVFN 320 (377)
Q Consensus 316 ~l~~n 320 (377)
+++.|
T Consensus 271 ~l~~n 275 (347)
T 4fmz_A 271 NVGSN 275 (347)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 77665
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.26 E-value=6.9e-12 Score=122.91 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred eccCCCccccchh---------hhccCCCCCceEeccCCccceEE---ccCccccccccccc
Q 042962 241 VVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCT 290 (377)
Q Consensus 241 ~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~ 290 (377)
+..+++|+.|+++ ..++++++|+.|++++|.+..+. +.++.+|+.+.++.
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 4566667777665 23456667777777766665542 33444555554443
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.25 E-value=6.9e-12 Score=131.42 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=59.4
Q ss_pred CCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccc--ceeeccC
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRG--LKHLELP 199 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~--l~~l~i~ 199 (377)
.+|..+..+++|+.|+|++|.+. .|..+..+++|++|++.+|.+.+..+. .+.+|++|+.|++++|.- ..+-.+.
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHh
Confidence 34555566666666666666552 334455666666666666665433222 245666666666666631 2222233
Q ss_pred CCCCCcEEEEcccC---CCchhhhcCCcccEEEEecc
Q 042962 200 NLGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 200 ~l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~ 233 (377)
.+++|+.|++.+|. .++.....+++|+.|+++++
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 45666666666665 22233345566666666544
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=119.88 Aligned_cols=188 Identities=16% Similarity=0.154 Sum_probs=109.0
Q ss_pred cccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCC
Q 042962 128 LVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGK 203 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~ 203 (377)
.+..+++|++|+|++|.+. .+..+.++++|++|+|.+|.+++- ....+.++++|+.|+++++. ++....+..+++
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 3444555566666555442 123455566666666666655321 12235566666666666552 111122334567
Q ss_pred CcEEEEcccCC---CchhhhcCCcccEEEEeccc-cCCc-eeeccCCCccccchh---------hhccCCCCCceEeccC
Q 042962 204 LKEFKVYDEYG---LEQVYIQGMNAHSVHIIGLH-MLPH-ISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISS 269 (377)
Q Consensus 204 L~~L~i~~~~~---~~~~~~~~p~L~~L~l~g~~-~~~~-~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~ 269 (377)
|+.|++.+|.. +.......++|++|+++++. ..++ ..+..+++|+.|+|+ ..+.++++|+.|++++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 77777776651 11222334577777776653 2222 235677888888877 2357778888888888
Q ss_pred CccceEE---ccCcccccccccccCCcceEEEcccccccCc-cccccceEEEEecCC
Q 042962 270 FCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFNPD 322 (377)
Q Consensus 270 ~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n~~ 322 (377)
|.+..+. +.++++|+.++++.+++..+. +..+ ..++|++++++.|+-
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE------ESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCC------GGGBSCGGGCCEEECCSSCE
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeC------HhHcCCCcccCEEEccCCCc
Confidence 8887763 455667777777776654321 1122 236899999988863
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=2.1e-11 Score=120.19 Aligned_cols=174 Identities=15% Similarity=0.054 Sum_probs=113.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
.+++.|++... ....+| +..+++|++|+|++|.+... .+..+++|++|++++|.+++- . ++.+++
T Consensus 85 ~~L~~L~Ls~N--------~l~~~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l---~-l~~l~~ 149 (457)
T 3bz5_A 85 TNLTYLACDSN--------KLTNLD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI---D-VSHNTQ 149 (457)
T ss_dssp TTCSEEECCSS--------CCSCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCC---C-CTTCTT
T ss_pred CCCCEEECcCC--------CCceee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCcccee---c-cccCCc
Confidence 45666666421 223344 66789999999999987543 378889999999999988542 1 678889
Q ss_pred cccccccccccceeeccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-----
Q 042962 182 IEFISIISCRGLKHLELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC----- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~----- 253 (377)
|++|++++|..+..+.+..+++|+.|++.+|. .++ ...+++|+.|.++++. ... .++.+++|+.|+++
T Consensus 150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCS
T ss_pred CCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCccc
Confidence 99999988865655566667888888888876 222 2345677777776553 222 35666667766665
Q ss_pred -hhccCCCCCceEeccCCccceEEccCcccccccccccCCcc
Q 042962 254 -QEIVDCMKLRSIKISSFCLKSFLFIGYDTLDELKLCTPNLS 294 (377)
Q Consensus 254 -~~l~~~~~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~~~L~ 294 (377)
..++++++|+.|++++|.++.+.++.+.+|+.+.+..++|+
T Consensus 226 ~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 226 EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL 267 (457)
T ss_dssp CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred ccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCC
Confidence 12455666677777666666655555555554444444433
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=1.7e-11 Score=117.85 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=45.8
Q ss_pred cccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCC
Q 042962 128 LVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGK 203 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~ 203 (377)
.+..+++|++|+|++|.+. .+ ..+.++++|++|+|+++.+.. ....++.++++|++|+++++. ++..-.+..+++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 4455666777777666652 22 235566667777776666531 112234556666666666652 111112334466
Q ss_pred CcEEEEcccC
Q 042962 204 LKEFKVYDEY 213 (377)
Q Consensus 204 L~~L~i~~~~ 213 (377)
|+.|.+.++.
T Consensus 167 L~~L~l~~n~ 176 (390)
T 3o6n_A 167 LQNLQLSSNR 176 (390)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 6666666654
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=119.06 Aligned_cols=192 Identities=17% Similarity=0.195 Sum_probs=138.8
Q ss_pred CCcCCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++++.|+|++|.+. .+..+.++++|++|+|++|.+..-.. ..+.++++|++|+|+++. .+..-
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHh
Confidence 4566787654 68999999999873 23578899999999999998843222 347789999999999873 22222
Q ss_pred ccCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc--cCCce-eeccCCCccccchh-------hhccCCCCCc
Q 042962 197 ELPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH--MLPHI-SVVPCKNLKKLKLC-------QEIVDCMKLR 263 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~--~~~~~-~~~~~~~L~~L~L~-------~~l~~~~~L~ 263 (377)
.+..+++|+.|.+.++. .+. .....+++|++|+++++. ..++. .+.++++|++|+++ ..+.++++|+
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCC
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccC
Confidence 34557999999999987 222 223467999999997743 22222 36788999999988 3457788999
Q ss_pred eEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCc-cccccceEEEEecC
Q 042962 264 SIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFNP 321 (377)
Q Consensus 264 ~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n~ 321 (377)
.|++++|.++.+. +.++.+|+.+.+..+++... .|..+ ..++|+.|+|+.|.
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI------ERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEE------ChhhhcCCCCCCEEECCCCC
Confidence 9999999998874 55667788888877776432 12222 23689999998773
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=2.3e-11 Score=119.44 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=138.7
Q ss_pred CCcCCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|+.|+|++|.+. .+..+.++++|+.|+|++|.+.+-.. ..+.++++|++|+|+++. .+..-
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChh
Confidence 4556776553 68999999999873 24578899999999999998853222 336789999999999884 22222
Q ss_pred ccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccc--cCCce-eeccCCCccccchh-------hhccCCCCCc
Q 042962 197 ELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLH--MLPHI-SVVPCKNLKKLKLC-------QEIVDCMKLR 263 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~--~~~~~-~~~~~~~L~~L~L~-------~~l~~~~~L~ 263 (377)
.+..+++|+.|.+++|. .+ ......+++|++|+++++. ..++. .+.++++|++|+++ ..+..+++|+
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 221 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCC
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccccccccc
Confidence 24457899999999997 12 2233467999999997743 22222 26788999999988 3457788999
Q ss_pred eEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecC
Q 042962 264 SIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNP 321 (377)
Q Consensus 264 ~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~ 321 (377)
.|++++|.+..+. +.++.+|+.+.+..+++... .|..+. .++|+.|+|+.|.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI------ERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceE------CHHHhcCCCCCCEEECCCCc
Confidence 9999999998873 56677888888877775432 222232 3689999999873
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=4.2e-12 Score=118.00 Aligned_cols=94 Identities=14% Similarity=0.084 Sum_probs=41.0
Q ss_pred CCcccEEEEecccc---CCceeeccCCCccccchh---------hhccCCCCCceEeccCCccceEE---ccCccccccc
Q 042962 222 GMNAHSVHIIGLHM---LPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDEL 286 (377)
Q Consensus 222 ~p~L~~L~l~g~~~---~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l 286 (377)
+++|++|.++++.. ..+..+..+++|++|+++ ..+.++++|+.|++++|.++.+. +..+.+|+.+
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 34555555544321 122234445555555554 12344455555555555544432 2333444444
Q ss_pred ccccCCcceEEEcccccccCccc--cccceEEEEecC
Q 042962 287 KLCTPNLSIFKYHGDLISFSSTA--LALSEIALVFNP 321 (377)
Q Consensus 287 ~l~~~~L~~~~~~~~~~p~~l~~--~~L~~l~l~~n~ 321 (377)
+++.+++. +..|..+.. ++|+.++++.|+
T Consensus 229 ~L~~N~l~------~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIM------TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCC------BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCc------ccCHHHHHhhhccCCEEEccCCC
Confidence 44444321 112222221 356677666554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.23 E-value=4.3e-11 Score=117.22 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=46.1
Q ss_pred cccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHH-HHhcCCcccccccccccc--cceeec-cCCC
Q 042962 128 LVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIK-DLISGCPLIEFISIISCR--GLKHLE-LPNL 201 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~cp~Le~L~L~~c~--~l~~l~-i~~l 201 (377)
.+..+++|++|+|++|.+. .|..+.++++|++|+|.+|.+++..+. ..+..+++|++|+++++. +..... +.++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 3445666666666666552 234556666666666666666443322 224556666666666552 111111 3334
Q ss_pred CCCcEEEEcccC
Q 042962 202 GKLKEFKVYDEY 213 (377)
Q Consensus 202 ~~L~~L~i~~~~ 213 (377)
++|+.|++.+|.
T Consensus 154 ~~L~~L~L~~n~ 165 (455)
T 3v47_A 154 RRFHVLDLTFNK 165 (455)
T ss_dssp TTCCEEECTTCC
T ss_pred CcccEEeCCCCc
Confidence 566666665554
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=120.56 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=95.9
Q ss_pred CccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCC
Q 042962 126 PQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNL 201 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l 201 (377)
|..+..+++|++|+|++|.+. .|+ .+.++++|++|+|++|.+.+.. ...+..+++|+.|+++++. ++..-.+.++
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEEECCCCccceeChhhccCC
Confidence 444555666666666666552 222 3456666666666666553211 1124556666666666542 1111123344
Q ss_pred CCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc--cCCceeeccCC------------------------Cccccch
Q 042962 202 GKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH--MLPHISVVPCK------------------------NLKKLKL 252 (377)
Q Consensus 202 ~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~------------------------~L~~L~L 252 (377)
++|+.|.+.+|. .+. .....+++|+.|++.++. ...+..+..++ +|+.|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 566666666554 111 112234555555554432 10111123333 4455544
Q ss_pred h---------hhccCCCCCceEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEe
Q 042962 253 C---------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVF 319 (377)
Q Consensus 253 ~---------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~ 319 (377)
+ ..+.++++|+.|++++|.++.+. +.++.+|+.+.+..+++.. ..|..+. .++|+.|+++.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV------VEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE------ECTTTBTTCTTCCEEECCS
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce------ECHHHhcCcccCCEEECCC
Confidence 4 23456667777777777666554 3445566666666555432 1232332 36899999987
Q ss_pred cC
Q 042962 320 NP 321 (377)
Q Consensus 320 n~ 321 (377)
|.
T Consensus 306 N~ 307 (477)
T 2id5_A 306 NQ 307 (477)
T ss_dssp SC
T ss_pred Cc
Confidence 73
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=1.4e-11 Score=122.38 Aligned_cols=199 Identities=19% Similarity=0.108 Sum_probs=140.7
Q ss_pred CceEEEEEeeCCCCCCCCCCcCC-CccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 103 NVKELKLGFCCPHSNYPDSYYNL-PQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 103 ~v~~L~L~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
+++.|++... ....+ |..+..+++|++|+|++|.+.....+..+++|++|+|++|.+++ +...++
T Consensus 35 ~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~ 100 (487)
T 3oja_A 35 NVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPS 100 (487)
T ss_dssp GCCEEECCSS--------CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTT
T ss_pred CccEEEeeCC--------cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCC
Confidence 6777777532 23344 45677899999999999987422238889999999999998842 334589
Q ss_pred cccccccccccceeeccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccc--cCCceeec-cCCCccccchh--
Q 042962 182 IEFISIISCRGLKHLELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLH--MLPHISVV-PCKNLKKLKLC-- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~--~~~~~~~~-~~~~L~~L~L~-- 253 (377)
|+.|++++|. +..+....+++|+.|.+.+|. .. +.....+++|++|+++++. +..+..+. .+++|+.|+|+
T Consensus 101 L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 101 IETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999999884 322333446899999999987 22 2223457899999998774 22233343 67899999988
Q ss_pred -----hhccCCCCCceEeccCCccceEE--ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecCCC
Q 042962 254 -----QEIVDCMKLRSIKISSFCLKSFL--FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNPDN 323 (377)
Q Consensus 254 -----~~l~~~~~L~~L~i~~~~L~~l~--l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~~~ 323 (377)
.....+++|+.|++++|.+..+. +..+.+|+.++++.+++.. +|..+. .++|+.++++.|+-.
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-------cchhhccCCCCCEEEcCCCCCc
Confidence 22356889999999999998863 5566788888888877653 443333 367899998876553
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=6.7e-11 Score=116.64 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=79.4
Q ss_pred cccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKV 209 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i 209 (377)
..+++|++|+|++|.+...+.+.++++|++|++.++.+.+.. . ++++++|++|++++|.-.....+..+++|+.|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 141 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEEC
Confidence 345555555555554422112445555555555555442211 1 4445555555555442111111333455555555
Q ss_pred cccC--CCchh--------------------hhcCCcccEEEEeccccCCceeeccCCCccccchh-------hhccCCC
Q 042962 210 YDEY--GLEQV--------------------YIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC-------QEIVDCM 260 (377)
Q Consensus 210 ~~~~--~~~~~--------------------~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~-------~~l~~~~ 260 (377)
.+|. .+..+ ...+++|+.|+++++.......+..+++|++|+++ ..++.++
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 221 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 221 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccC
Confidence 5544 11111 12344455555444321111113444455555444 1234445
Q ss_pred CCceEeccCCccceE-EccCcccccccccccCCcceEEEcccccccCccccccceEEEEecCC
Q 042962 261 KLRSIKISSFCLKSF-LFIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNPD 322 (377)
Q Consensus 261 ~L~~L~i~~~~L~~l-~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~~ 322 (377)
+|+.|++++|.++.+ .+..+.+|+.+.+..+++.. ++.....++|++|+++.|.-
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-------LAPLSGLTKLTELKLGANQI 277 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CGGGTTCTTCSEEECCSSCC
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-------chhhhcCCCCCEEECCCCcc
Confidence 555555555554443 22333444444444443321 11122236788888887643
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.21 E-value=3.2e-11 Score=113.35 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=82.7
Q ss_pred CccccccCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccc----ceeeccCC
Q 042962 126 PQLVFYAKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRG----LKHLELPN 200 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~----l~~l~i~~ 200 (377)
|..+..+++|++|+|++|.+. .|... +++|++|+++++.+.+.. ...+.++++|+.|+++++.- .....+.+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 344445555555555555542 22111 245555555555553211 22345666666666665521 11122333
Q ss_pred CCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-c-CCceeeccCCCccccchh---------hhccCCCCCceEec
Q 042962 201 LGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-M-LPHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKI 267 (377)
Q Consensus 201 l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~-~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i 267 (377)
+++|+.|.+.++. .++.. ..++|++|+++++. . ..+..+..+++|+.|+++ ..+.++++|+.|++
T Consensus 170 l~~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCCcCEEECCCCccccCCcc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 5666666666665 11111 12566666665543 1 112235566666666665 23456666777777
Q ss_pred cCCccceEE--ccCcccccccccccCCcc
Q 042962 268 SSFCLKSFL--FIGYDTLDELKLCTPNLS 294 (377)
Q Consensus 268 ~~~~L~~l~--l~~c~~L~~l~l~~~~L~ 294 (377)
++|.++.+. +..+++|+.+.+..+++.
T Consensus 248 ~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 248 NNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 766666442 344455666666555543
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.21 E-value=4.3e-11 Score=112.42 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=114.4
Q ss_pred CCCc-cccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeecc
Q 042962 124 NLPQ-LVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLEL 198 (377)
Q Consensus 124 ~lp~-~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i 198 (377)
.+|. .+..+++|++|+|++|.+. . |..+.++++|++|+++++.+.. +.. ...++|++|+++++. ++..-.+
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L~l~~n~l~~~~~~~~ 141 (330)
T 1xku_A 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQELRVHENEITKVRKSVF 141 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEEECCSSCCCBBCHHHH
T ss_pred EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEEECCCCcccccCHhHh
Confidence 3443 4556777888888777653 2 4456777778888887776631 110 123677777777663 2222224
Q ss_pred CCCCCCcEEEEcccCC----C-chhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh---------hhccCCCCCc
Q 042962 199 PNLGKLKEFKVYDEYG----L-EQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC---------QEIVDCMKLR 263 (377)
Q Consensus 199 ~~l~~L~~L~i~~~~~----~-~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~ 263 (377)
..+++|+.|++.++.. . ......+++|++|+++++. ..++..+ .++|++|+++ ..+.++++|+
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 4567888888887761 1 1122346788888886654 2333322 2677777776 3467888899
Q ss_pred eEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecC
Q 042962 264 SIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNP 321 (377)
Q Consensus 264 ~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~ 321 (377)
.|++++|.++.+. +..+++|+.+.++.+++. .+|..+. .++|+.++++.|.
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSC
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCc
Confidence 9999988888764 455667777777666543 3443333 3567888877663
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=1.9e-11 Score=111.88 Aligned_cols=160 Identities=13% Similarity=0.041 Sum_probs=103.7
Q ss_pred cccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCc
Q 042962 128 LVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLK 205 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~ 205 (377)
.+..+++|++|+|++|.+..++.+..+++|++|++++|.+.+- ....+.++++|++|++++|. ++..-.+..+++|+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 4667888888888888875555677888888888888877421 12335678888888888774 22222244568888
Q ss_pred EEEEcccC--CCch-hhhcCCcccEEEEeccc-cCCce-eeccCCCccccchh---------hhccCCCCCceEeccCCc
Q 042962 206 EFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHI-SVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFC 271 (377)
Q Consensus 206 ~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~-~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~ 271 (377)
.|.+.+|. .... ....+++|+.|+++++. ...+. .+..+++|+.|+++ ..+.++++|+.|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 88888886 2222 22356788888887764 22222 24667777777776 235667778888887776
Q ss_pred cceEEccCcccccccccccCC
Q 042962 272 LKSFLFIGYDTLDELKLCTPN 292 (377)
Q Consensus 272 L~~l~l~~c~~L~~l~l~~~~ 292 (377)
+. +.|++++.+.+..++
T Consensus 217 ~~----~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 217 WD----CTCPGIRYLSEWINK 233 (272)
T ss_dssp BC----CCTTTTHHHHHHHHH
T ss_pred cc----ccCcHHHHHHHHHHh
Confidence 54 345666655544433
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=6.7e-11 Score=116.62 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=113.5
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
+..+++|++|+|++|.+...+.+.++++|++|++++|.+.+- .. ++.+++|+.|.+.+.. .....+..+++|+.|+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA-LSGLTSLQQLSFGNQV-TDLKPLANLTTLERLD 183 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--GG-GTTCTTCSEEEEEESC-CCCGGGTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--hh-hccCCcccEeecCCcc-cCchhhccCCCCCEEE
Confidence 444555555555555442222344555555555555555221 11 4455555555554321 1112345578999999
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccceEE-cc
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKSFL-FI 278 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~l~-l~ 278 (377)
+.+|. .+.. ...+++|++|.++++.......++.+++|+.|+++ ..+.++++|+.|++++|.+..+. +.
T Consensus 184 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 262 (466)
T 1o6v_A 184 ISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 262 (466)
T ss_dssp CCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred CcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhh
Confidence 99887 3322 34679999999987752211226778999999887 35678899999999999887654 66
Q ss_pred CcccccccccccCCcceEEEcccccccCccccccceEEEEecCC
Q 042962 279 GYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNPD 322 (377)
Q Consensus 279 ~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~~ 322 (377)
.+.+|+.+.+..+++.. +|.....++|++|+++.|.-
T Consensus 263 ~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 263 GLTKLTELKLGANQISN-------ISPLAGLTALTNLELNENQL 299 (466)
T ss_dssp TCTTCSEEECCSSCCCC-------CGGGTTCTTCSEEECCSSCC
T ss_pred cCCCCCEEECCCCccCc-------cccccCCCccCeEEcCCCcc
Confidence 77788888887776533 22222336899999987743
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=3.3e-11 Score=122.65 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=44.9
Q ss_pred cccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCC
Q 042962 128 LVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGK 203 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~ 203 (377)
.+..+++|++|+|++|.+. .|+ .+.++++|++|+|++|.+.. .+..+++++++|+.|++++|. ++..-.+..+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 4455666666666666552 222 34566666666666665531 112234556666666666552 111112334456
Q ss_pred CcEEEEcccC
Q 042962 204 LKEFKVYDEY 213 (377)
Q Consensus 204 L~~L~i~~~~ 213 (377)
|+.|.+.+|.
T Consensus 173 L~~L~L~~N~ 182 (597)
T 3oja_B 173 LQNLQLSSNR 182 (597)
T ss_dssp CCEEECTTSC
T ss_pred CcEEECcCCC
Confidence 6666666554
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.19 E-value=4.4e-11 Score=121.51 Aligned_cols=122 Identities=12% Similarity=-0.008 Sum_probs=62.0
Q ss_pred ccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHH-HHHHhcCCccccccccccccccee--eccCCCCCCcEE
Q 042962 131 YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQV-IKDLISGCPLIEFISIISCRGLKH--LELPNLGKLKEF 207 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~L~~c~~l~~--l~i~~l~~L~~L 207 (377)
.+++|+.|++++|....+..+..+++|++|++++|.+.+.. ....+.++++|+.|++++|. +.. -.+.++++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 55666666666653322224556777777777777663211 12235667777777777663 111 123335666666
Q ss_pred EEcccC--CC-c-hhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh
Q 042962 208 KVYDEY--GL-E-QVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 208 ~i~~~~--~~-~-~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~ 253 (377)
.+.+|. .. + .....+++|++|+++++. +..+..+.++++|+.|+++
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 666665 11 1 122344556666554442 1122223444445544443
No 36
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.19 E-value=1.2e-11 Score=116.31 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=121.3
Q ss_pred HHHHHHHHh-CCceEEEEEeeCCCCCCCCCCcCCCcccccc--CcccEEEecccccc-CCCCCCCCCCCCeeeccceeeC
Q 042962 93 YRCLRYAVE-TNVKELKLGFCCPHSNYPDSYYNLPQLVFYA--KSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCAD 168 (377)
Q Consensus 93 ~~wi~~a~~-~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~ 168 (377)
.+|-..+.. ...+.+++. . .... |..+... ++++.|+++++.+. .++...++++|++|+++++.++
T Consensus 37 ~~W~~~~~~~~~~~~l~l~--~-------~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLT--G-------KNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp HHHHHHHTCSTTSSEEECT--T-------CBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC
T ss_pred HHHHHHhcCchhheeeccc--c-------ccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC
Confidence 467766643 235666653 1 1111 4445555 88999999998874 3345678999999999999998
Q ss_pred hHHHHHHhcCCcccccccccccccc--eeeccCCCCCCcEEEEcccCC-----CchhhhcCCcccEEEEecc-ccC---C
Q 042962 169 DQVIKDLISGCPLIEFISIISCRGL--KHLELPNLGKLKEFKVYDEYG-----LEQVYIQGMNAHSVHIIGL-HML---P 237 (377)
Q Consensus 169 ~~~l~~l~~~cp~Le~L~L~~c~~l--~~l~i~~l~~L~~L~i~~~~~-----~~~~~~~~p~L~~L~l~g~-~~~---~ 237 (377)
+..+...+..||+|++|++++|.-. ..-.+..+++|++|++.+|.. +......+++|++|+++++ ... +
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 8878888999999999999998421 112345579999999999952 2333456899999999877 321 2
Q ss_pred ceeeccCC-Cccccchh------------hhccCCCCCceEeccCCc
Q 042962 238 HISVVPCK-NLKKLKLC------------QEIVDCMKLRSIKISSFC 271 (377)
Q Consensus 238 ~~~~~~~~-~L~~L~L~------------~~l~~~~~L~~L~i~~~~ 271 (377)
+..+..++ +|++|+++ ..+.++++|+.|+++++.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 33367788 89988886 123678999999998876
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.19 E-value=7.9e-11 Score=108.95 Aligned_cols=181 Identities=15% Similarity=0.000 Sum_probs=98.1
Q ss_pred ccCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee-ccCCCCCCcEEE
Q 042962 131 YAKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL-ELPNLGKLKEFK 208 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l-~i~~l~~L~~L~ 208 (377)
.+++++.++++++.+. +|+.+ .++++.|+|+++.+.+-.. ..+.++++|+.|.++++. +..+ ....+++|+.|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEE
Confidence 4455555666555542 22222 2455666666655532111 124455666666665542 1111 112345666666
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccc-cCCc-eeeccCCCccccchh---------hhccCCCCCceEeccCCccceE
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPH-ISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSF 275 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~-~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l 275 (377)
++++. .++......++|++|+++++. ..++ ..+.++++|++|+++ ..+.++++|+.|++++|+++.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 66555 222222345566666665543 2222 224556666666665 2346778889999999888876
Q ss_pred Ec---cCcccccccccccCCcceEEEcccccccCc-cccccceEEEEecCC
Q 042962 276 LF---IGYDTLDELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFNPD 322 (377)
Q Consensus 276 ~l---~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n~~ 322 (377)
.- ..+.+|+.+.+..+++. .+|..+ ...+|+.++++.|+-
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCC-------ccChhhcccccCCeEEeCCCCc
Confidence 53 34567777777777664 344332 235788898887764
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.18 E-value=7.9e-11 Score=109.83 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=58.5
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
+..+++|++|+|++|.+...+.+..+++|++|++++|.+.+- .. +..+++|+.|++++|.-.....+..+++|+.|.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 157 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEE
Confidence 344455555555555443333444455555555555544221 11 344555555555544211001122334555555
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccc
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~ 273 (377)
+.+|. .+.. ...+++|+.|+++++. ...+ .+..+++|++|+++ ..+.++++|+.|++++|.+.
T Consensus 158 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 158 IGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ccCCcCCCChh-hcCCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 55444 1111 1234455555554432 1111 13444445555444 12344444555554444443
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.18 E-value=5.2e-11 Score=111.41 Aligned_cols=212 Identities=19% Similarity=0.100 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHh--CCceEEEEEeeCCCCCCCCCCcCCC-ccccccCcccEEEeccccccCCCCCCCCCCCCeeecccee
Q 042962 90 SSIYRCLRYAVE--TNVKELKLGFCCPHSNYPDSYYNLP-QLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVC 166 (377)
Q Consensus 90 ~~i~~wi~~a~~--~~v~~L~L~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~ 166 (377)
..+...+..... .++++|++.-. ....++ ..+..+++|++|+|++|.+.....+..+++|++|++++|.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTS--------CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred cchhhhHHHHhccCCCCCEEECcCC--------ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 445555554443 36787777521 233444 4677899999999999987432348889999999999998
Q ss_pred eChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEEcccC--CCch-hhhcCCcccEEEEeccc-cCC-ceee
Q 042962 167 ADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-MLP-HISV 241 (377)
Q Consensus 167 ~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~~-~~~~ 241 (377)
+++ +..+++|+.|.++++. +..+....+++|+.|.+.+|. .... .....++|++|+++++. ... +..+
T Consensus 92 l~~------l~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQE------LLVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEE------EEECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccc------ccCCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 842 3356999999999875 333344447899999999997 2222 22356899999998764 211 2223
Q ss_pred -ccCCCccccchh-------hhccCCCCCceEeccCCccceE--EccCcccccccccccCCcceEEEcccccccCcc-cc
Q 042962 242 -VPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKSF--LFIGYDTLDELKLCTPNLSIFKYHGDLISFSST-AL 310 (377)
Q Consensus 242 -~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~l--~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~ 310 (377)
..+++|++|+++ .....+++|+.|++++|.++.+ .+..+++|+.+.++.+++.. +|..+. .+
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~l~ 237 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQ 237 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCT
T ss_pred hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-------hhhHhhcCC
Confidence 467889999988 2234588999999999999876 35566788888888877653 343333 36
Q ss_pred ccceEEEEecCCC
Q 042962 311 ALSEIALVFNPDN 323 (377)
Q Consensus 311 ~L~~l~l~~n~~~ 323 (377)
+|+.++++.|+-.
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 8999999877653
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=3.2e-11 Score=110.93 Aligned_cols=182 Identities=15% Similarity=0.113 Sum_probs=119.0
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCC-ccccccCcccEEEecccccc--CCCCCCCCCCCCeeecccee-eChHHHHHHhc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLP-QLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVC-ADDQVIKDLIS 177 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~ 177 (377)
.++++|++.-. ....+| ..+..+++|++|+|++|.+. .|..+.++++|++|+++++. +..-. ...+.
T Consensus 32 ~~l~~L~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGN--------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFH 102 (285)
T ss_dssp TTCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTT
T ss_pred CCceEEEeeCC--------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhc
Confidence 45676766421 233344 34567888888888888763 24467788888888888886 43211 22366
Q ss_pred CCcccccccccccc--cceeeccCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc-cCCce-eeccCCCcccc
Q 042962 178 GCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHI-SVVPCKNLKKL 250 (377)
Q Consensus 178 ~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~-~~~~~~~L~~L 250 (377)
++++|++|+++++. ++..-.+..+++|+.|.+.++. ... .....+++|++|+++++. ..++. .+..+++|+.|
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 78888888888774 2222234456888888888876 222 222356888888887764 22222 25677888888
Q ss_pred chh---------hhccCCCCCceEeccCCccceEE---ccCcccccccccccCC
Q 042962 251 KLC---------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPN 292 (377)
Q Consensus 251 ~L~---------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~ 292 (377)
+++ ..+.++++|+.|++++|.++.+. +..+++|+.+.+..+.
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 876 34677888999999988887754 5566677777766554
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.17 E-value=5.2e-11 Score=110.59 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=136.8
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHH-HHHHhcCCcccccccccccccce-ee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQV-IKDLISGCPLIEFISIISCRGLK-HL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~L~~c~~l~-~l 196 (377)
....+|..+. ++|++|+|++|.+. .|+ .+.++++|++|+|+++.+.... ....+.++++|++|+++++.-.. .-
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~ 95 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence 4556776543 68999999999874 443 3689999999999999874211 01124568999999999884211 11
Q ss_pred ccCCCCCCcEEEEcccC--CCc--hhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh----------hhccCCC
Q 042962 197 ELPNLGKLKEFKVYDEY--GLE--QVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC----------QEIVDCM 260 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~--~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~----------~~l~~~~ 260 (377)
.+..+++|+.|.+.++. ... ......++|++|+++++. ...+..+.++++|++|+++ ..+.+++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 24457999999999987 222 234567899999998764 2233346788999999887 2357789
Q ss_pred CCceEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecCC
Q 042962 261 KLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNPD 322 (377)
Q Consensus 261 ~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~~ 322 (377)
+|+.|++++|.++.+. +..+++|+.+.++.+++... .+..+. .++|+.++++.|.-
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL------DTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC------CSGGGTTCTTCCEEECTTSCC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc------ChhhccCcccCCEeECCCCCC
Confidence 9999999999998873 45667788888877765432 111222 36899999998754
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.17 E-value=9.2e-11 Score=112.78 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=130.9
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccc-cccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLV-FYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
.+++.+++.- .....+|..+ ..+++|++|+|++|.+. .+ ..+..+++|++|+|+++.+.+.. ...+++
T Consensus 45 ~~l~~l~l~~--------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKN--------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQN 115 (390)
T ss_dssp CCCSEEEEES--------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred CCceEEEecC--------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcC
Confidence 5778788762 1345577664 47899999999999873 33 37889999999999999884322 233678
Q ss_pred Ccccccccccccccceeec---cCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccccCCceeeccCCCccccch
Q 042962 179 CPLIEFISIISCRGLKHLE---LPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKL 252 (377)
Q Consensus 179 cp~Le~L~L~~c~~l~~l~---i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L 252 (377)
+++|++|+++++. +..+. +..+++|+.|.+.+|. .. ......+++|++|+++++... ...+..+++|+.|++
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANV 193 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEEC
T ss_pred CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeec
Confidence 9999999999884 22222 3457899999999987 22 222345789999999776421 123566777777776
Q ss_pred h----hhccCCCCCceEeccCCccceEEccCccccccccccc------------CCcceEEEcccc----cccCcc-ccc
Q 042962 253 C----QEIVDCMKLRSIKISSFCLKSFLFIGYDTLDELKLCT------------PNLSIFKYHGDL----ISFSST-ALA 311 (377)
Q Consensus 253 ~----~~l~~~~~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~------------~~L~~~~~~~~~----~p~~l~-~~~ 311 (377)
+ ..+...++|+.|+++++.+..+......+|+.+.+.. ++|+.+...+.. .|..+. .++
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 6 2234445666676666655444332223333332221 233333332221 232332 367
Q ss_pred cceEEEEecC
Q 042962 312 LSEIALVFNP 321 (377)
Q Consensus 312 L~~l~l~~n~ 321 (377)
|++|+++.|.
T Consensus 274 L~~L~L~~n~ 283 (390)
T 3o6n_A 274 LERLYISNNR 283 (390)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8899888764
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=3.9e-11 Score=122.08 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=94.1
Q ss_pred cCCCcc-ccccCcccEEEecccccc-CCCC-CCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccC
Q 042962 123 YNLPQL-VFYAKSMSLLGLDSCKLE-SPRG-NVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELP 199 (377)
Q Consensus 123 ~~lp~~-l~~~~~L~~L~L~~~~~~-~p~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~ 199 (377)
..+|+. +..+++|++|+|++|.+. .|+. +.++++|++|+|++|.+.+... ..++++++|+.|+++++. +..+.+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~ 189 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR-LTHVDLS 189 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSC-CSBCCGG
T ss_pred CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCC-CCCcChh
Confidence 345443 467888888888888763 3433 5778888888888887743222 235678888888888763 2222233
Q ss_pred CCCCCcEEEEcccCC------------------Cchh-hhcCCcccEEEEeccccCCceeeccCCCccccchh-------
Q 042962 200 NLGKLKEFKVYDEYG------------------LEQV-YIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC------- 253 (377)
Q Consensus 200 ~l~~L~~L~i~~~~~------------------~~~~-~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~------- 253 (377)
.+++|+.|.+.++.. +..+ ....++|+.|.++++...-+..+..+++|+.|+++
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC
Confidence 334444444443320 0000 01124566666655432222335666677777666
Q ss_pred --hhccCCCCCceEeccCCccceEEcc--CcccccccccccCC
Q 042962 254 --QEIVDCMKLRSIKISSFCLKSFLFI--GYDTLDELKLCTPN 292 (377)
Q Consensus 254 --~~l~~~~~L~~L~i~~~~L~~l~l~--~c~~L~~l~l~~~~ 292 (377)
..++++++|+.|++++|.+..+... .+++|+.+.++.+.
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 3456667777777777766655422 24455555554443
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=7.8e-11 Score=118.56 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=118.8
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEecccccc---------------------CCCCCCCCCCCCee
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLE---------------------SPRGNVTLSCLREL 160 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---------------------~p~~~~~l~~L~~L 160 (377)
.+++.+++... ....+|..+..+ +|++|++++|.+. .......+++|++|
T Consensus 282 ~~L~~L~l~~~--------~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 282 TNVSSFSLVSV--------TIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp TTCSEEEEESC--------EECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred CcccEEEecCc--------cchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEE
Confidence 56777777532 223455555544 5555555555442 11112456677777
Q ss_pred eccceeeChHH-HHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEcccC--CCc--hhhhcCCcccEEEEecc
Q 042962 161 RPRHVCADDQV-IKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--GLE--QVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 161 ~L~~~~~~~~~-l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~~~--~~~~~~p~L~~L~l~g~ 233 (377)
+++++.+.+.. ....+.++++|+.|++++|. ++... +..+++|+.|.+.+|. ... .....+++|++|+++++
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 77776653211 01224567777777777763 12111 4446778888777776 111 22345677888887665
Q ss_pred c--cCCceeeccCCCccccchh----------hhccCCCCCceEeccCCccceE---EccCcccccccccccCCcceEEE
Q 042962 234 H--MLPHISVVPCKNLKKLKLC----------QEIVDCMKLRSIKISSFCLKSF---LFIGYDTLDELKLCTPNLSIFKY 298 (377)
Q Consensus 234 ~--~~~~~~~~~~~~L~~L~L~----------~~l~~~~~L~~L~i~~~~L~~l---~l~~c~~L~~l~l~~~~L~~~~~ 298 (377)
. ...+..+.++++|++|+++ ..+.++++|+.|++++|.++.+ .+.++++|+.+.+..+++..
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 508 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--- 508 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC---
Confidence 3 2233345677778777776 1246677888888888877766 24556677777776665432
Q ss_pred cccccccCcc-ccccceEEEEecCC
Q 042962 299 HGDLISFSST-ALALSEIALVFNPD 322 (377)
Q Consensus 299 ~~~~~p~~l~-~~~L~~l~l~~n~~ 322 (377)
..|..+. .++|+.++++.|+-
T Consensus 509 ---~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 509 ---VPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCB
T ss_pred ---CCHHHhhcccCCcEEEecCCcc
Confidence 1222232 36889999987754
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.15 E-value=7.3e-11 Score=107.97 Aligned_cols=192 Identities=16% Similarity=0.083 Sum_probs=119.6
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|++|+|++|.+. .++ .+.++++|++|+++++.+.+-. ...+.++++|+.|+++++. ++..-
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChh
Confidence 3455666542 56888888888763 232 6777888888888888764211 1235678888888888774 11112
Q ss_pred ccCCCCCCcEEEEcccC--CCch-hhhcCCcccEEEEeccc-cC--CceeeccCCCccccchh---------hhccCCCC
Q 042962 197 ELPNLGKLKEFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-ML--PHISVVPCKNLKKLKLC---------QEIVDCMK 261 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~--~~~~~~~~~~L~~L~L~---------~~l~~~~~ 261 (377)
.+.++++|+.|.+.++. .... ....+++|++|+++++. .. ++..+.++++|+.|+++ ..+..+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 24456788888888776 2222 12356788888887664 22 34456777777777776 12333444
Q ss_pred Cc----eEeccCCccceEEccCc--ccccccccccCCcceEEEccccccc-Ccc-ccccceEEEEecCC
Q 042962 262 LR----SIKISSFCLKSFLFIGY--DTLDELKLCTPNLSIFKYHGDLISF-SST-ALALSEIALVFNPD 322 (377)
Q Consensus 262 L~----~L~i~~~~L~~l~l~~c--~~L~~l~l~~~~L~~~~~~~~~~p~-~l~-~~~L~~l~l~~n~~ 322 (377)
++ .|+++.|.++.+..... .+|+.+.++.+++.. +|. .+. .++|+.++++.|+-
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-------VPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-------CCTTTTTTCCSCCEEECCSSCB
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCceee-------cCHhHhcccccccEEEccCCcc
Confidence 44 78888888877653322 257777777666532 232 222 36899999998765
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.5e-10 Score=105.73 Aligned_cols=178 Identities=17% Similarity=0.097 Sum_probs=109.4
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|++|+|++|.+. .++ .+.++++|++|+|+++.+.. ....++.++++|++|+++++. .+..-
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 3445676543 67899999988763 332 57788999999999887742 122345678889999888773 22111
Q ss_pred ccCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 197 ELPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
.+..+++|+.|.+.++. .+. .....+++|++|+++++. ..++. ..+.++++|+.|++++|.+
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------------GVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCC
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------------hHccCCcccceeEecCCcC
Confidence 23446788888888876 222 222356788888886653 11111 1245566777777777777
Q ss_pred ceEE---ccCcccccccccccCCcceEEEccccccc-Ccc-ccccceEEEEecCC
Q 042962 273 KSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISF-SST-ALALSEIALVFNPD 322 (377)
Q Consensus 273 ~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~-~l~-~~~L~~l~l~~n~~ 322 (377)
+.+. +.++.+|+.+.+..+++.. +|. .+. .++|+.++++.|+-
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKR-------VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSC-------CCTTTTTTCTTCCEEECCSSCB
T ss_pred cEeChhHhccCCCcCEEECCCCcCCc-------CCHHHhccccCCCEEEecCCCe
Confidence 6654 3445566666666655432 221 122 25788888887753
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=1.2e-10 Score=106.62 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=108.6
Q ss_pred cccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEF 207 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L 207 (377)
..+++|+.|.+++|.+...+.+..+++|++|+++++.+.+ +. .+..+++|++|++++|. ++..-.+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4678899999999988666678899999999999998854 22 47889999999999884 2222224557899999
Q ss_pred EEcccC--CCc-hhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE---ccCc
Q 042962 208 KVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL---FIGY 280 (377)
Q Consensus 208 ~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~---l~~c 280 (377)
.+.+|. ... .....+++|++|+++++. ...+. ..++++++|+.|++++|.++.+. +.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--------------GVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH--------------HHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 999987 222 223457889999997763 11111 12344555666666666655543 2344
Q ss_pred ccccccccccCCcceEEEcccccccCcc-ccccceEEEEecC
Q 042962 281 DTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNP 321 (377)
Q Consensus 281 ~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~ 321 (377)
.+|+.+.+..+++.. ..|..+. .++|+.++++.|+
T Consensus 181 ~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCcCCc------cCHHHHhCCcCCCEEEccCCC
Confidence 555555555544321 1122122 2466666666554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.13 E-value=2.4e-10 Score=107.43 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=48.4
Q ss_pred CCCccccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCC
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNL 201 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l 201 (377)
.+|..+. ++|+.|+|++|.+. . |..+.++++|++|++.++.+.+-.. ..+.++++|++|+++++. +..+.....
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~ 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKNH-LVEIPPNLP 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECCSSC-CCSCCSSCC
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECCCCc-CCccCcccc
Confidence 4444432 45666666665542 2 2245556666666666665532111 124555666666665542 112221112
Q ss_pred CCCcEEEEcccC--CCc-hhhhcCCcccEEEEecc
Q 042962 202 GKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 202 ~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~ 233 (377)
++|++|.+.++. .+. .....+++|+.|+++++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 455555555554 111 11223455555555443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=117.05 Aligned_cols=151 Identities=10% Similarity=0.057 Sum_probs=111.4
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|++|+|++|.+. .++ .+.++++|++|+++++.+.+-. ...++++++|++|+++++. ++..-
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 4567787654 58999999999873 333 6889999999999999885321 2236789999999999873 22222
Q ss_pred ccCCCCCCcEEEEcccC--CCch--hhhcCCcccEEEEeccc--cCC-ceeeccCCCccccchh---------hhccCCC
Q 042962 197 ELPNLGKLKEFKVYDEY--GLEQ--VYIQGMNAHSVHIIGLH--MLP-HISVVPCKNLKKLKLC---------QEIVDCM 260 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~~--~~~~~p~L~~L~l~g~~--~~~-~~~~~~~~~L~~L~L~---------~~l~~~~ 260 (377)
.+..+++|+.|++.++. .++. ....+++|++|+++++. ... +..+.++++|+.|+++ ..+.+++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 25567999999999987 3332 33468999999998763 222 2346788899999887 3467889
Q ss_pred CCceEeccCCccce
Q 042962 261 KLRSIKISSFCLKS 274 (377)
Q Consensus 261 ~L~~L~i~~~~L~~ 274 (377)
+|+.|+++.|.+..
T Consensus 199 ~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 199 NVSHLILHMKQHIL 212 (353)
T ss_dssp EEEEEEEECSCSTT
T ss_pred cCCeecCCCCcccc
Confidence 99999998876543
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.12 E-value=1e-10 Score=118.76 Aligned_cols=140 Identities=9% Similarity=0.042 Sum_probs=83.7
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
+..+++|+.|+++++.+...+.+..+++|++|++.+|.+. .+.. + .++.|+.|++++|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--cccc-C-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 4567778888888777643346677778888888888761 1223 2 6777888887777555555555567777777
Q ss_pred EcccC--CC---chhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh----------hhccCCCCCceEeccCCcc
Q 042962 209 VYDEY--GL---EQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC----------QEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 209 i~~~~--~~---~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~----------~~l~~~~~L~~L~i~~~~L 272 (377)
+.+|. .. ......+++|++|+++++. ...+..+..+++|+.|+++ ..+.++++|+.|++++|.+
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 77765 11 2333456667777765543 2222334555555555554 1234455555555555443
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=1e-10 Score=119.91 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=101.9
Q ss_pred CCcccc--ccCcccEEEeccccc--cCCCCCCCCCCCCeeecccee-eCh-HHHHHHh-----cCCcccccccccccccc
Q 042962 125 LPQLVF--YAKSMSLLGLDSCKL--ESPRGNVTLSCLRELRPRHVC-ADD-QVIKDLI-----SGCPLIEFISIISCRGL 193 (377)
Q Consensus 125 lp~~l~--~~~~L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~~~-~~~-~~l~~l~-----~~cp~Le~L~L~~c~~l 193 (377)
+|..++ .+++|++|+|++|.+ ..|..+.++++|++|++++|. +++ ..+..+. ..+++|+.|++++|.-.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899998 999999999999986 456788999999999999998 877 4444421 24599999999988422
Q ss_pred eee----ccCCCCCCcEEEEcccC---CCchhhhcCCcccEEEEeccc-cCCceeeccCCC-ccccchh--------hhc
Q 042962 194 KHL----ELPNLGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKN-LKKLKLC--------QEI 256 (377)
Q Consensus 194 ~~l----~i~~l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~-L~~L~L~--------~~l 256 (377)
.+ .+..+++|+.|.+.+|. .++ .....++|++|+++++. ..++..+..+++ |+.|+++ ..+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 22 35567899999998887 222 22345778888886663 334444666666 7777766 112
Q ss_pred cC--CCCCceEeccCCccc
Q 042962 257 VD--CMKLRSIKISSFCLK 273 (377)
Q Consensus 257 ~~--~~~L~~L~i~~~~L~ 273 (377)
.. +++|+.|+++.|.+.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp CTTCSSCEEEEECCSSCTT
T ss_pred hhcccCccCEEECcCCcCC
Confidence 22 225666666665543
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=6.2e-11 Score=117.71 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=136.4
Q ss_pred cCCCccccc----cCcccEEEeccccccC-C-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee
Q 042962 123 YNLPQLVFY----AKSMSLLGLDSCKLES-P-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL 196 (377)
Q Consensus 123 ~~lp~~l~~----~~~L~~L~L~~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l 196 (377)
..+|..+.. +++|+.|+|++|.+.. + ..+..+++|++|+|++|.+.+... ++++++|+.|+|++|. +..+
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCC
Confidence 344554443 4589999999998743 3 368899999999999998843211 7889999999999884 4444
Q ss_pred ccCCCCCCcEEEEcccCCCchhhhcCCcccEEEEeccc--cCCceeeccCCCccccchh---------hhc-cCCCCCce
Q 042962 197 ELPNLGKLKEFKVYDEYGLEQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKKLKLC---------QEI-VDCMKLRS 264 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~~~~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~---------~~l-~~~~~L~~ 264 (377)
.. .++|+.|.+.+|..........++|+.|.++++. +..+..++++++|+.|+++ ..+ .++++|+.
T Consensus 96 ~~--~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 96 LV--GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp EE--CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CC--CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 43 3899999999997211122346899999998775 3334557889999999998 233 37899999
Q ss_pred EeccCCccceEE-ccCcccccccccccCCcceEEEcccccccCccccccceEEEEecCC
Q 042962 265 IKISSFCLKSFL-FIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNPD 322 (377)
Q Consensus 265 L~i~~~~L~~l~-l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~~ 322 (377)
|++++|.+..+. ...+++|+.++++.+++..+ .|.....++|+.|+++.|.-
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM------GPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEE------CGGGGGGTTCSEEECTTSCC
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCCC------CHhHcCCCCccEEEecCCcC
Confidence 999999998864 34567888888888876532 12222336899999987743
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=1.7e-10 Score=117.26 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=100.4
Q ss_pred CCCccccccCcccEEEeccccccC--CCC-------------------------CCCCCCCCeeeccceeeChHH-HHHH
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLES--PRG-------------------------NVTLSCLRELRPRHVCADDQV-IKDL 175 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~~--p~~-------------------------~~~l~~L~~L~L~~~~~~~~~-l~~l 175 (377)
.+|..+..+++|++|++++|.+.. |.. +.++++|++|+++++.+.+.. ....
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 556666666666666666665421 113 344555555555555442211 0112
Q ss_pred hcCCccccccccccccc--ceeeccCCCCCCcEEEEcccC--C--CchhhhcCCcccEEEEeccc--cCCceeeccCCCc
Q 042962 176 ISGCPLIEFISIISCRG--LKHLELPNLGKLKEFKVYDEY--G--LEQVYIQGMNAHSVHIIGLH--MLPHISVVPCKNL 247 (377)
Q Consensus 176 ~~~cp~Le~L~L~~c~~--l~~l~i~~l~~L~~L~i~~~~--~--~~~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L 247 (377)
+.++++|+.|++++|.- ...-.+..+++|+.|++.+|. . .......+++|+.|+++++. ...+..+..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 45566666666666531 111233446889999998887 1 12223456888888887764 2233346677888
Q ss_pred cccchh------------hhccCCCCCceEeccCCccceEE---ccCcccccccccccCCc
Q 042962 248 KKLKLC------------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNL 293 (377)
Q Consensus 248 ~~L~L~------------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L 293 (377)
++|+++ ..+.++++|+.|++++|.+..+. +.++++|+.++++.+++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 888876 12567788888888888877664 45566777776665553
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=1.1e-10 Score=106.67 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=122.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCc-cccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQ-LVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
.+++.|++.. .....+|. .+..+++|++|+|++|.+. .+ ..+.++++|++|+|++|.+.+... ..+.+
T Consensus 28 ~~l~~L~ls~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSG 98 (276)
T ss_dssp TTCCEEECTT--------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTT
T ss_pred CCccEEECCC--------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcC
Confidence 4677777642 12334444 5667899999999999873 33 367889999999999998743222 23678
Q ss_pred Ccccccccccccc--cceeeccCCCCCCcEEEEcccC--C--CchhhhcCCcccEEEEeccc-cC-CceeeccCCCcc--
Q 042962 179 CPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--G--LEQVYIQGMNAHSVHIIGLH-ML-PHISVVPCKNLK-- 248 (377)
Q Consensus 179 cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~--~~~~~~~~p~L~~L~l~g~~-~~-~~~~~~~~~~L~-- 248 (377)
+++|++|.++++. ++....+..+++|+.|.+.++. . ++.....+++|++|+++++. .. .+..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999873 3333346667999999999987 2 23444567999999998764 21 122345555555
Q ss_pred --ccchh--------hhccCCCCCceEeccCCccceEE---ccCcccccccccccCCc
Q 042962 249 --KLKLC--------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNL 293 (377)
Q Consensus 249 --~L~L~--------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L 293 (377)
.|+++ .......+|+.|++++|.++.+. +..+.+|+.+.+..+.+
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 44444 11233347889999988888764 24455666666665543
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=9.1e-11 Score=109.52 Aligned_cols=185 Identities=17% Similarity=0.082 Sum_probs=104.5
Q ss_pred ccCcccEEEecccccc--CCCCC--CCCCCCCeeeccceeeChH--HHHHHhc-CCcccccccccccc--cceeeccCCC
Q 042962 131 YAKSMSLLGLDSCKLE--SPRGN--VTLSCLRELRPRHVCADDQ--VIKDLIS-GCPLIEFISIISCR--GLKHLELPNL 201 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~--~p~~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~cp~Le~L~L~~c~--~l~~l~i~~l 201 (377)
.+++|++|+|++|.+. .|..+ ..+++|++|+|++|.+++. .+..+.. ..++|++|+++++. ++..-.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5677888888877763 34443 6777788888887777432 2222111 13777777777763 2222234456
Q ss_pred CCCcEEEEcccCCCch------h-hhcCCcccEEEEeccccC----Ccee-eccCCCccccchh----------hhccCC
Q 042962 202 GKLKEFKVYDEYGLEQ------V-YIQGMNAHSVHIIGLHML----PHIS-VVPCKNLKKLKLC----------QEIVDC 259 (377)
Q Consensus 202 ~~L~~L~i~~~~~~~~------~-~~~~p~L~~L~l~g~~~~----~~~~-~~~~~~L~~L~L~----------~~l~~~ 259 (377)
++|+.|++++|..... + ....++|++|+++++.-. .+.. +.++++|++|+++ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777777752111 1 134577777777665311 1111 2345666666665 112345
Q ss_pred CCCceEeccCCccceEEccCcccccccccccCCcceEEEcccccccCccccccceEEEEecCC
Q 042962 260 MKLRSIKISSFCLKSFLFIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNPD 322 (377)
Q Consensus 260 ~~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~~ 322 (377)
++|+.|++++|.++.+.-.-..+|+.++++.+++... |.....++|++++++.|+-
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~-------p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN-------PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC-------CCTTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC-------hhHhhCCCCCEEeccCCCC
Confidence 6788888888877754322225677777766665332 3322235678887776643
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=2.1e-10 Score=106.13 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=81.0
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
+..+++|+.|+|++|.+...+.+.++++|+.|++++|.+.+ +.. +..+++|+.|++++|.-...-.+..+++|+.|.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEE
Confidence 55677788888887776432236777788888888777743 222 667777888877776311111233457777777
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccc
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~ 273 (377)
+++|. .+ .....+++|+.|+++++. ...+. +..+++|+.|+++ ..+.++++|+.|++++|.+.
T Consensus 141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 77776 22 222356777777776653 11111 4455555555554 22344455555555554443
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=1.3e-10 Score=122.67 Aligned_cols=12 Identities=33% Similarity=0.216 Sum_probs=9.3
Q ss_pred cccceEEEEecC
Q 042962 310 LALSEIALVFNP 321 (377)
Q Consensus 310 ~~L~~l~l~~n~ 321 (377)
++|+.|+|+.|.
T Consensus 697 ~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 697 SPISTIILSNNL 708 (876)
T ss_dssp CCCSEEECCSCC
T ss_pred CCCCEEECCCCc
Confidence 578888888774
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=107.91 Aligned_cols=206 Identities=16% Similarity=0.094 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccc--cccCcccEEEeccccccCC------CCCCCCCCCCeee
Q 042962 90 SSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLV--FYAKSMSLLGLDSCKLESP------RGNVTLSCLRELR 161 (377)
Q Consensus 90 ~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~p------~~~~~l~~L~~L~ 161 (377)
..+..........++++|++.-.. -....|..+ ..+++|++|+|++|.+... ..+..+++|++|+
T Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~ 151 (310)
T 4glp_A 79 QLLVGALRVLAYSRLKELTLEDLK-------ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS 151 (310)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESCC-------CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE
T ss_pred HHHHHHHHhcccCceeEEEeeCCE-------eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE
Confidence 344455555555667777775221 112344444 5677788888887776421 1223577778888
Q ss_pred ccceeeChHHHHHHhcCCcccccccccccccce------eeccCCCCCCcEEEEcccC--CCch----hhhcCCcccEEE
Q 042962 162 PRHVCADDQVIKDLISGCPLIEFISIISCRGLK------HLELPNLGKLKEFKVYDEY--GLEQ----VYIQGMNAHSVH 229 (377)
Q Consensus 162 L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~------~l~i~~l~~L~~L~i~~~~--~~~~----~~~~~p~L~~L~ 229 (377)
|++|.+.+.. ...++++++|++|+++++.-.. ...+..+++|++|.+++|. .++. +....++|++|+
T Consensus 152 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 152 IAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp EECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred eeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 8777663221 1235567777777777764211 1122345777777777776 1122 122457777777
Q ss_pred Eeccc-cC-CceeeccCCCccccchhhhccCCCCCceEeccCCccceEEccCcccccccccccCCcceEEEcccccccCc
Q 042962 230 IIGLH-ML-PHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFLFIGYDTLDELKLCTPNLSIFKYHGDLISFSS 307 (377)
Q Consensus 230 l~g~~-~~-~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l 307 (377)
++++. .. .|..+..+ ..+++|+.|++++|.++.+.-.-+++|+.++++.+++..+ |...
T Consensus 231 Ls~N~l~~~~p~~~~~~------------~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~-------~~~~ 291 (310)
T 4glp_A 231 LSHNSLRATVNPSAPRC------------MWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA-------PQPD 291 (310)
T ss_dssp CTTSCCCCCCCSCCSSC------------CCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC-------CCTT
T ss_pred CCCCCCCccchhhHHhc------------cCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC-------chhh
Confidence 76653 11 12222222 1225777777877777755433345677777777665432 2111
Q ss_pred cccccceEEEEecCC
Q 042962 308 TALALSEIALVFNPD 322 (377)
Q Consensus 308 ~~~~L~~l~l~~n~~ 322 (377)
..++|++|+++.|+-
T Consensus 292 ~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 292 ELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSCEECSSTTT
T ss_pred hCCCccEEECcCCCC
Confidence 225788888877653
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.05 E-value=2.2e-10 Score=107.18 Aligned_cols=179 Identities=12% Similarity=0.109 Sum_probs=130.3
Q ss_pred ccCcccEEEeccccccC-C-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEE
Q 042962 131 YAKSMSLLGLDSCKLES-P-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFK 208 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 208 (377)
.+++|++|+|++|.+.. + ..+.++++|++|+|++|.+.+.. . +..+++|++|++++|. +..+.. .++|+.|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~~--~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELLV--GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEEE--CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-cccccC--CCCcCEEE
Confidence 56789999999998743 2 25789999999999999884321 1 7789999999999884 443332 38999999
Q ss_pred EcccCCCchhhhcCCcccEEEEeccc-c-CCceeeccCCCccccchh---------hhc-cCCCCCceEeccCCccceEE
Q 042962 209 VYDEYGLEQVYIQGMNAHSVHIIGLH-M-LPHISVVPCKNLKKLKLC---------QEI-VDCMKLRSIKISSFCLKSFL 276 (377)
Q Consensus 209 i~~~~~~~~~~~~~p~L~~L~l~g~~-~-~~~~~~~~~~~L~~L~L~---------~~l-~~~~~L~~L~i~~~~L~~l~ 276 (377)
+.+|..........++|++|.++++. . ..+..+..+++|++|+++ ..+ .++++|+.|++++|.++.+.
T Consensus 106 l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp CCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 99987222222346889999998775 2 223356778999999988 223 47899999999999998874
Q ss_pred -ccCcccccccccccCCcceEEEcccccccCccccccceEEEEecC
Q 042962 277 -FIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIALVFNP 321 (377)
Q Consensus 277 -l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l~~n~ 321 (377)
...+.+|+.+.++.+++..+. +.....++|+.++++.|.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~l~------~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNKLAFMG------PEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CCCCCTTCCEEECCSSCCCEEC------GGGGGGTTCSEEECTTSC
T ss_pred cccccccCCEEECCCCcCCcch------hhhcccCcccEEECcCCc
Confidence 234668888888887765431 111223689999998774
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.04 E-value=1.8e-10 Score=108.30 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=41.2
Q ss_pred CcccEEEEeccc-cC-CceeeccCCCccccchh---------hhccCCCCCceEeccCCccceEE--ccCcccccccccc
Q 042962 223 MNAHSVHIIGLH-ML-PHISVVPCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSFL--FIGYDTLDELKLC 289 (377)
Q Consensus 223 p~L~~L~l~g~~-~~-~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l~--l~~c~~L~~l~l~ 289 (377)
++|++|+++++. .. .+..+..+++|++|+++ ..+.++++|+.|++++|.++.+. +..+++|+.+.+.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 456666665543 11 12235566667777665 23566677777777777666542 4445566666666
Q ss_pred cCCcc
Q 042962 290 TPNLS 294 (377)
Q Consensus 290 ~~~L~ 294 (377)
.+++.
T Consensus 273 ~N~l~ 277 (332)
T 2ft3_A 273 TNNIT 277 (332)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 55543
No 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=3.4e-10 Score=115.21 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=117.1
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcc
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPL 181 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~ 181 (377)
.+++.|.+.- .....+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+ +. -+..+++
T Consensus 43 ~~L~~L~l~~--------n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~ 110 (605)
T 1m9s_A 43 NSIDQIIANN--------SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKK 110 (605)
T ss_dssp TTCCCCBCTT--------CCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTT
T ss_pred CCCCEEECcC--------CCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCC
Confidence 5566666541 1233444 467899999999999987443347889999999999998843 22 3678999
Q ss_pred cccccccccccceeeccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-----
Q 042962 182 IEFISIISCRGLKHLELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC----- 253 (377)
Q Consensus 182 Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~----- 253 (377)
|+.|+|++|.-...-.+..+++|+.|.+++|. .+ .....+++|+.|+++++. ...+. +..+++|+.|+|+
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 99999998842211234457899999999987 33 233467899999998775 22222 7788889988887
Q ss_pred --hhccCCCCCceEeccCCccceEEccCc
Q 042962 254 --QEIVDCMKLRSIKISSFCLKSFLFIGY 280 (377)
Q Consensus 254 --~~l~~~~~L~~L~i~~~~L~~l~l~~c 280 (377)
..+.++++|+.|++++|.+....+..+
T Consensus 189 ~l~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 189 DLRALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp BCGGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred CChHHccCCCCCEEEccCCcCcCCccccc
Confidence 356778889999998887766544333
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=2.3e-09 Score=113.47 Aligned_cols=62 Identities=18% Similarity=0.041 Sum_probs=26.4
Q ss_pred cccccCcccEEEeccccc--cC-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 128 LVFYAKSMSLLGLDSCKL--ES-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~--~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.+..+++|++|+|++|.. .. |..+.++++|++|+|++|.+.+... ..+.++++|++|+|++|
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFC 107 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCC
Confidence 334445555555554422 11 2234445555555555544422111 12344455555555444
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.02 E-value=8.1e-10 Score=113.25 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=123.1
Q ss_pred CcCCCccccccCc-ccEEEecccccc-CCCCCCC--CCCCCeeeccceeeChHHHHHHhc-------CCccccccccccc
Q 042962 122 YYNLPQLVFYAKS-MSLLGLDSCKLE-SPRGNVT--LSCLRELRPRHVCADDQVIKDLIS-------GCPLIEFISIISC 190 (377)
Q Consensus 122 ~~~lp~~l~~~~~-L~~L~L~~~~~~-~p~~~~~--l~~L~~L~L~~~~~~~~~l~~l~~-------~cp~Le~L~L~~c 190 (377)
...+|..+..+++ |++|+|++|.+. .|..+.. +++|++|++++|.+.+..+.. +. .+++|+.|++++|
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSS
T ss_pred cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCC
Confidence 3478888888888 999999988873 4444444 347899999988875433322 33 5678888888877
Q ss_pred ccceeec---cCCCCCCcEEEEcccC--CCchhhhc--------CCcccEEEEeccc-cCCceeec--cCCCccccchh-
Q 042962 191 RGLKHLE---LPNLGKLKEFKVYDEY--GLEQVYIQ--------GMNAHSVHIIGLH-MLPHISVV--PCKNLKKLKLC- 253 (377)
Q Consensus 191 ~~l~~l~---i~~l~~L~~L~i~~~~--~~~~~~~~--------~p~L~~L~l~g~~-~~~~~~~~--~~~~L~~L~L~- 253 (377)
. +..+. ...+++|+.|.+.+|. .++..... +++|++|+++++. ..++..+. .+++|+.|+++
T Consensus 444 ~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 Q-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp C-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS
T ss_pred c-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC
Confidence 3 21221 1235788888888886 12111111 1278888887764 34444454 77888888887
Q ss_pred -------hhccCCCCCceEeccC------CccceE---EccCcccccccccccCCcceEEEcccccccCccccccceEEE
Q 042962 254 -------QEIVDCMKLRSIKISS------FCLKSF---LFIGYDTLDELKLCTPNLSIFKYHGDLISFSSTALALSEIAL 317 (377)
Q Consensus 254 -------~~l~~~~~L~~L~i~~------~~L~~l---~l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~~~L~~l~l 317 (377)
..+.++++|+.|++++ |.+... .+.++++|+.+.++.+++ +.+|..+. ++|+.|++
T Consensus 523 N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~~ip~~~~-~~L~~L~L 594 (636)
T 4eco_A 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-------RKVNEKIT-PNISVLDI 594 (636)
T ss_dssp SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-------CBCCSCCC-TTCCEEEC
T ss_pred CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-------CccCHhHh-CcCCEEEC
Confidence 3456788888888854 443322 355667777777777665 23453333 57889988
Q ss_pred EecCC
Q 042962 318 VFNPD 322 (377)
Q Consensus 318 ~~n~~ 322 (377)
+.|+-
T Consensus 595 s~N~l 599 (636)
T 4eco_A 595 KDNPN 599 (636)
T ss_dssp CSCTT
T ss_pred cCCCC
Confidence 87754
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.02 E-value=2.1e-10 Score=115.00 Aligned_cols=206 Identities=15% Similarity=0.141 Sum_probs=133.8
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCC-CccccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNL-PQLVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
..+++|++... ....+ |..+..+++|++|+|++|.+. . |..+.++++|++|+|++|.+.+... ..+++
T Consensus 26 ~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGP 96 (549)
T ss_dssp TTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTT
T ss_pred CCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhcc
Confidence 46777777522 22233 456778899999999998873 2 3467889999999999998854333 33688
Q ss_pred Ccccccccccccc--cce-eeccCCCCCCcEEEEcccCCCc----hhhhcCCcccEEEEeccc--cCCceeeccCCCccc
Q 042962 179 CPLIEFISIISCR--GLK-HLELPNLGKLKEFKVYDEYGLE----QVYIQGMNAHSVHIIGLH--MLPHISVVPCKNLKK 249 (377)
Q Consensus 179 cp~Le~L~L~~c~--~l~-~l~i~~l~~L~~L~i~~~~~~~----~~~~~~p~L~~L~l~g~~--~~~~~~~~~~~~L~~ 249 (377)
+++|++|+++++. ++. .-.+..+++|+.|++.+|.... .....+++|++|+++++. +..+..+..+++|+.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999884 111 1234557899999999886211 123457889999997764 234445777888888
Q ss_pred cchh---------hhccCCCCCceEeccCCccceEEcc------CcccccccccccCCcceEEEcccc---cccCcc-cc
Q 042962 250 LKLC---------QEIVDCMKLRSIKISSFCLKSFLFI------GYDTLDELKLCTPNLSIFKYHGDL---ISFSST-AL 310 (377)
Q Consensus 250 L~L~---------~~l~~~~~L~~L~i~~~~L~~l~l~------~c~~L~~l~l~~~~L~~~~~~~~~---~p~~l~-~~ 310 (377)
|+++ ..+..+++|+.|++++|.+..+.+. .+.+|+.+.+..+.+ .+.. ++..+. .+
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL-----TDESFNELLKLLRYIL 251 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE-----EHHHHHHHHGGGGGCT
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc-----chhHHHHHHHHhhhhc
Confidence 8776 1235688999999999888765321 233445444433321 1111 112222 26
Q ss_pred ccceEEEEecC
Q 042962 311 ALSEIALVFNP 321 (377)
Q Consensus 311 ~L~~l~l~~n~ 321 (377)
+|+++++..+.
T Consensus 252 ~L~~l~l~~~~ 262 (549)
T 2z81_A 252 ELSEVEFDDCT 262 (549)
T ss_dssp TCCEEEEESCE
T ss_pred ccccccccccc
Confidence 78999998764
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.02 E-value=8.2e-10 Score=100.73 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=106.6
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCc-cccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQ-LVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
.++++|++... ....+|. .+..+++|++|+|++|.+. .|+ .+.++++|++|+|+++.+.+- ....+.+
T Consensus 37 ~~l~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSN--------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQ 107 (270)
T ss_dssp TTCSEEECCSS--------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTT
T ss_pred CCCCEEECcCC--------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHccc
Confidence 45777777521 3345554 5668899999999999873 333 357899999999999988431 1234678
Q ss_pred Ccccccccccccc--cceeeccCCCCCCcEEEEcccC--CCch-hhhcCCcccEEEEeccc-cCCce-eeccCCCccccc
Q 042962 179 CPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHI-SVVPCKNLKKLK 251 (377)
Q Consensus 179 cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~-~~~~~~~L~~L~ 251 (377)
+++|+.|+++++. ++..-.+..+++|+.|.+.++. .+.. ....+++|+.|+++++. ..++. .+..+++|++|+
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 9999999999874 2222234557999999999987 2222 23457899999997764 22222 245556666666
Q ss_pred hh---------hhccCCCCCceEeccCCcc
Q 042962 252 LC---------QEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 252 L~---------~~l~~~~~L~~L~i~~~~L 272 (377)
++ ..+.++++|+.|++++|.+
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 54 1244556666666666554
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=5e-10 Score=118.27 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=101.8
Q ss_pred CCcccc--ccCcccEEEeccccc--cCCCCCCCCCCCCeeecccee-eCh-HHHHHH------hcCCccccccccccccc
Q 042962 125 LPQLVF--YAKSMSLLGLDSCKL--ESPRGNVTLSCLRELRPRHVC-ADD-QVIKDL------ISGCPLIEFISIISCRG 192 (377)
Q Consensus 125 lp~~l~--~~~~L~~L~L~~~~~--~~p~~~~~l~~L~~L~L~~~~-~~~-~~l~~l------~~~cp~Le~L~L~~c~~ 192 (377)
+|..+. .+++|+.|+|++|.+ ..|..+.++++|+.|+|++|. +++ ..+..+ +..+|+|+.|++++|.-
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 899887 999999999999975 456678899999999999998 776 443331 23556999999998842
Q ss_pred ceee----ccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCC-ccccchh--------hhc
Q 042962 193 LKHL----ELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKN-LKKLKLC--------QEI 256 (377)
Q Consensus 193 l~~l----~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~-L~~L~L~--------~~l 256 (377)
. .+ .+..+++|+.|.+++|. .++ ....+++|+.|+++++. ..++..+..+++ |+.|+++ ..+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 2 22 34567899999998887 233 22356788888887764 344445667777 8877776 112
Q ss_pred cCC--CCCceEeccCCcc
Q 042962 257 VDC--MKLRSIKISSFCL 272 (377)
Q Consensus 257 ~~~--~~L~~L~i~~~~L 272 (377)
... ++|+.|+++.|.+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CTTCSSCEEEEECCSSCT
T ss_pred hccccCCCCEEECcCCcC
Confidence 222 2366676666544
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=1.2e-09 Score=98.47 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=95.5
Q ss_pred CCcCCCccccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|+.|+|++|.+. .+ ..+.++++|++|+|++|.+.+.. ...+.++++|+.|+++++. .+..-
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChh
Confidence 4556776654 68999999998873 22 35788899999999999884321 2336778999999998774 22212
Q ss_pred ccCCCCCCcEEEEcccC--CCch-hhhcCCcccEEEEeccc-cCCce-eeccCCCccccchh---------hhccCCCCC
Q 042962 197 ELPNLGKLKEFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHI-SVVPCKNLKKLKLC---------QEIVDCMKL 262 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~-~~~~~~~L~~L~L~---------~~l~~~~~L 262 (377)
.+..+++|+.|.+.++. .+.. .....++|+.|+++++. ..++. .+..+++|++|+++ ..+.++++|
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 23456889999998887 2222 22356888888887764 22222 24555566666554 134455566
Q ss_pred ceEeccCCccc
Q 042962 263 RSIKISSFCLK 273 (377)
Q Consensus 263 ~~L~i~~~~L~ 273 (377)
+.|++++|.+.
T Consensus 182 ~~L~l~~N~~~ 192 (251)
T 3m19_A 182 QTITLFGNQFD 192 (251)
T ss_dssp CEEECCSCCBC
T ss_pred CEEEeeCCcee
Confidence 66666665543
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=4.9e-10 Score=115.41 Aligned_cols=41 Identities=15% Similarity=-0.102 Sum_probs=21.2
Q ss_pred CCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 150 GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 150 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.+..+++|+.|++++|.+.+......+.++++|++|++++|
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 34555666666666665432222223455566666666555
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=1.1e-09 Score=101.30 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=116.3
Q ss_pred cccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKV 209 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i 209 (377)
..+++|+.|++++|.+...+.+..+++|++|++++|.+.+-. . ++++++|+.|.++++.--..-.+..+++|+.|.+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 357889999999998755456888999999999999884321 2 7889999999999874211123556799999999
Q ss_pred cccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccceE-Ecc
Q 042962 210 YDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKSF-LFI 278 (377)
Q Consensus 210 ~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~l-~l~ 278 (377)
.+|. .+.. ...+++|+.|+++++. ..+ ..+..+++|+.|+++ ..+.++++|+.|++++|.++.+ .+.
T Consensus 120 ~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~ 197 (291)
T 1h6t_A 120 EHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197 (291)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCCcCCCChh-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhc
Confidence 9987 3322 3467899999998775 222 347788899999887 2367889999999999988765 244
Q ss_pred CcccccccccccCC
Q 042962 279 GYDTLDELKLCTPN 292 (377)
Q Consensus 279 ~c~~L~~l~l~~~~ 292 (377)
.+.+|+.+.+..+.
T Consensus 198 ~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCSEEEEEEEE
T ss_pred cCCCCCEEECcCCc
Confidence 55566666555443
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.98 E-value=6.5e-10 Score=111.81 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=72.5
Q ss_pred CCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCC
Q 042962 125 LPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGK 203 (377)
Q Consensus 125 lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~ 203 (377)
+|..+..+++|+.|++++|.+ ..|..+..+ +|++|++.++.+.. +. ...+++|+.|.+.++..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCC
Confidence 455566789999999999887 445556666 88999988887741 11 1356777777777664333233234566
Q ss_pred CcEEEEcccC--CC---chhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh
Q 042962 204 LKEFKVYDEY--GL---EQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 204 L~~L~i~~~~--~~---~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~ 253 (377)
|+.|++.+|. .. ......+++|++|+++++. ...+..+..+++|+.|+++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence 6666666665 11 1222345666666665542 1222224455555555554
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.98 E-value=7.8e-10 Score=96.01 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=17.6
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceee
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~ 167 (377)
+..+++|++|++++|.+..++.+..+++|++|++++|.+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC
T ss_pred HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc
Confidence 344444555555444433333344444444444444444
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=3.1e-10 Score=105.85 Aligned_cols=190 Identities=14% Similarity=0.044 Sum_probs=126.1
Q ss_pred HHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccc--cccCcccEEEecccccc-CCCCCCCC-----CCCCeeeccceee
Q 042962 96 LRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLV--FYAKSMSLLGLDSCKLE-SPRGNVTL-----SCLRELRPRHVCA 167 (377)
Q Consensus 96 i~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~-~p~~~~~l-----~~L~~L~L~~~~~ 167 (377)
+....-.++++|++.-.. -...+|..+ ..+++|++|+|++|.+. .|..+..+ ++|++|+|++|.+
T Consensus 89 ~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 89 LRVLGISGLQELTLENLE-------VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp HHHHTTSCCCEEEEEEEB-------CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred HHhcCcCCccEEEccCCc-------ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 333334689999997532 122466655 67899999999999873 34334444 8999999999988
Q ss_pred ChHHHHHHhcCCcccccccccccccce------eeccCCCCCCcEEEEcccC--CCchh----hhcCCcccEEEEeccc-
Q 042962 168 DDQVIKDLISGCPLIEFISIISCRGLK------HLELPNLGKLKEFKVYDEY--GLEQV----YIQGMNAHSVHIIGLH- 234 (377)
Q Consensus 168 ~~~~l~~l~~~cp~Le~L~L~~c~~l~------~l~i~~l~~L~~L~i~~~~--~~~~~----~~~~p~L~~L~l~g~~- 234 (377)
.+... ..++.+++|++|+++++.-.. .+....+++|+.|.+.+|. .++.+ ....++|++|+++++.
T Consensus 162 ~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 162 LNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred ccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 43222 236789999999999885221 1222557899999999987 11222 2345899999998775
Q ss_pred -cCCc-eeeccCCCccccchh-hhccCC-----CCCceEeccCCccceE-EccCcccccccccccCCc
Q 042962 235 -MLPH-ISVVPCKNLKKLKLC-QEIVDC-----MKLRSIKISSFCLKSF-LFIGYDTLDELKLCTPNL 293 (377)
Q Consensus 235 -~~~~-~~~~~~~~L~~L~L~-~~l~~~-----~~L~~L~i~~~~L~~l-~l~~c~~L~~l~l~~~~L 293 (377)
+..+ ..+..+++|++|+++ ..+... ++|+.|++++|+++.+ .+..+++|+.+.+..+.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTT
T ss_pred CcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCC
Confidence 2121 234567889999887 222111 6889999999988865 245556677776666554
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=115.41 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=90.5
Q ss_pred CCcCCCccccccCcccEEEecccccc--CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE--SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|. ..++|++|+|++|.+. .|..+.++++|++|+|+++..........+.++++|+.|+|++|. ++.+-
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4567776 3578999999999873 345789999999999999955322223347889999999999884 22222
Q ss_pred ccCCCCCCcEEEEcccCC---Cch--hhhcCCcccEEEEeccc-cCC--ceeeccCCCccccchh
Q 042962 197 ELPNLGKLKEFKVYDEYG---LEQ--VYIQGMNAHSVHIIGLH-MLP--HISVVPCKNLKKLKLC 253 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~~---~~~--~~~~~p~L~~L~l~g~~-~~~--~~~~~~~~~L~~L~L~ 253 (377)
.+.++++|+.|++++|.. ... ....+++|++|+++++. ... +..++++++|++|+++
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 455678888888888871 111 13357888888887764 121 2236777777777765
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.97 E-value=8.1e-10 Score=98.77 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=101.4
Q ss_pred CcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeecccee-eChHHHHHHhcCCcccccccccccccceeec-
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVC-ADDQVIKDLISGCPLIEFISIISCRGLKHLE- 197 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~- 197 (377)
...+|. + .++|++|+|++|.+. .|+ .+.++++|++|++.++. ++.- ....+.++++|++|++++|..+..+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 345565 2 347889999888763 333 57788899999998885 5321 11235788899999998865555443
Q ss_pred --cCCCCCCcEEEEcccC--CCchhhhcCCccc---EEEEecc-c-cCCce-eeccCCCcc-ccchh--------hhccC
Q 042962 198 --LPNLGKLKEFKVYDEY--GLEQVYIQGMNAH---SVHIIGL-H-MLPHI-SVVPCKNLK-KLKLC--------QEIVD 258 (377)
Q Consensus 198 --i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~---~L~l~g~-~-~~~~~-~~~~~~~L~-~L~L~--------~~l~~ 258 (377)
+.++++|+.|.+.+|. .++. ....++|+ +|+++++ . ..++. .+.++++|+ .|+++ .....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 2346889999998886 3333 23456676 8888776 3 22222 245566666 66664 11112
Q ss_pred CCCCceEeccCCc-cceEE---ccCc-ccccccccccCCc
Q 042962 259 CMKLRSIKISSFC-LKSFL---FIGY-DTLDELKLCTPNL 293 (377)
Q Consensus 259 ~~~L~~L~i~~~~-L~~l~---l~~c-~~L~~l~l~~~~L 293 (377)
.++|+.|++++|. ++.+. +.++ .+|+.++++.+++
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 2566667776663 66553 3344 5555665555554
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.96 E-value=5e-10 Score=104.33 Aligned_cols=170 Identities=11% Similarity=-0.026 Sum_probs=103.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCC-ccccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChH-HHH--HH
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLP-QLVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQ-VIK--DL 175 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~-~l~--~l 175 (377)
.+++.|++.-..- ......++ ..+..+++|++|+|++|.+. .+ ..+.++++|++|+|++|.+.+. .+. ..
T Consensus 117 ~~L~~L~Ls~n~i----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 117 LALSSLRLRNVSW----ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp BCCSSCEEESCCC----SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCCCEEEeecccc----cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 5678888873221 00001111 23346899999999999873 33 4677899999999999987432 222 12
Q ss_pred hcCCccccccccccccc--ceee---ccCCCCCCcEEEEcccC--CC-chhhhcC---CcccEEEEeccc-cCCceeecc
Q 042962 176 ISGCPLIEFISIISCRG--LKHL---ELPNLGKLKEFKVYDEY--GL-EQVYIQG---MNAHSVHIIGLH-MLPHISVVP 243 (377)
Q Consensus 176 ~~~cp~Le~L~L~~c~~--l~~l---~i~~l~~L~~L~i~~~~--~~-~~~~~~~---p~L~~L~l~g~~-~~~~~~~~~ 243 (377)
+..+|+|++|++++|.- +... .+.++++|+.|++++|. .. +.....+ ++|++|+++++. ..++..+
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-- 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-- 270 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--
Confidence 36799999999998842 1211 12346899999999997 21 1111222 789999997764 2222211
Q ss_pred CCCccccchhhhccCCCCCceEeccCCccceEE-ccCcccccccccccCC
Q 042962 244 CKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL-FIGYDTLDELKLCTPN 292 (377)
Q Consensus 244 ~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~-l~~c~~L~~l~l~~~~ 292 (377)
.++|+.|++++|+++.+. +..+++|+.+.++.+.
T Consensus 271 ---------------~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 ---------------PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---------------CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred ---------------cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 145666677777666532 3344455555554443
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.96 E-value=1e-09 Score=110.02 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=84.1
Q ss_pred ccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee---ccCCC
Q 042962 127 QLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPNL 201 (377)
Q Consensus 127 ~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~l 201 (377)
..+..+++|++|+|++|.+. .++ .+.++++|++|++++|.+.+-.....++++++|+.|++++|.....+ .+.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 44566777777777777663 222 26677777777777776642112223566777777777776533333 34456
Q ss_pred CCCcEEEEcccCC---CchhhhcCCcccEEEEecccc-CCcee-eccCCCccccchh-hhc-----------cCCCCCce
Q 042962 202 GKLKEFKVYDEYG---LEQVYIQGMNAHSVHIIGLHM-LPHIS-VVPCKNLKKLKLC-QEI-----------VDCMKLRS 264 (377)
Q Consensus 202 ~~L~~L~i~~~~~---~~~~~~~~p~L~~L~l~g~~~-~~~~~-~~~~~~L~~L~L~-~~l-----------~~~~~L~~ 264 (377)
++|+.|++.++.. .+......++|+.|++.++.. ..+.. +..+++|++|+++ ..+ ..+++|+.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 7777777777761 122223456677777765531 11111 2346677777665 111 23556666
Q ss_pred EeccCCccc
Q 042962 265 IKISSFCLK 273 (377)
Q Consensus 265 L~i~~~~L~ 273 (377)
|.++++.+.
T Consensus 228 L~l~~n~l~ 236 (549)
T 2z81_A 228 LAFRGSVLT 236 (549)
T ss_dssp EEEESCEEE
T ss_pred eeccccccc
Confidence 666665543
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.95 E-value=7.8e-10 Score=98.88 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=113.3
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCc-cccccCcccEEEecccc-c-cCCC-CCCCCCCCCeeeccc-eeeChHHHHHHh
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQ-LVFYAKSMSLLGLDSCK-L-ESPR-GNVTLSCLRELRPRH-VCADDQVIKDLI 176 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~-~~p~-~~~~l~~L~~L~L~~-~~~~~~~l~~l~ 176 (377)
..++.|++... ....+|. .+..+++|++|+|++|. + ..++ .+.++++|++|++.+ +.+..- ....+
T Consensus 31 ~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDAL 101 (239)
T ss_dssp TTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSE
T ss_pred CcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHh
Confidence 36777877632 3445555 45678899999999886 5 3333 577889999999988 666321 12236
Q ss_pred cCCcccccccccccc--cceeeccCCCCCCc---EEEEccc-C--CCc-hhhhcCCccc-EEEEeccc-cCCceeeccCC
Q 042962 177 SGCPLIEFISIISCR--GLKHLELPNLGKLK---EFKVYDE-Y--GLE-QVYIQGMNAH-SVHIIGLH-MLPHISVVPCK 245 (377)
Q Consensus 177 ~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~---~L~i~~~-~--~~~-~~~~~~p~L~-~L~l~g~~-~~~~~~~~~~~ 245 (377)
.++++|+.|+++++. ++.. +..+++|+ .|++.++ . .++ .....+++|+ .|+++++. ..++.......
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 788999999998873 2222 34456777 9999888 4 111 1223578888 99887764 22222222225
Q ss_pred Cccccchh----------hhccCC-CCCceEeccCCccceEEccCccccccccc
Q 042962 246 NLKKLKLC----------QEIVDC-MKLRSIKISSFCLKSFLFIGYDTLDELKL 288 (377)
Q Consensus 246 ~L~~L~L~----------~~l~~~-~~L~~L~i~~~~L~~l~l~~c~~L~~l~l 288 (377)
+|+.|+++ ..+.++ ++|+.|++++|.++.+.-..+.+|+.+.+
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEEC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeec
Confidence 67777665 234667 88999999998888765554555555543
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.94 E-value=1e-09 Score=111.74 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=72.8
Q ss_pred CCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCC
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGK 203 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~ 203 (377)
.+|+ +..+++|+.|+|++|.+..++.+..+++|+.|+|++|.+.+ +. -+..+++|+.|.|++|.-...-.+..+++
T Consensus 79 ~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 154 (605)
T 1m9s_A 79 DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLYLGNNKITDITVLSRLTK 154 (605)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGGGGSCTT
T ss_pred CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Cc-cccCCCccCEEECCCCccCCchhhcccCC
Confidence 3444 55677777777777766555566677777777777776632 12 25567777777777663111123334567
Q ss_pred CcEEEEcccC--CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh
Q 042962 204 LKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 204 L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~ 253 (377)
|+.|.+++|. .... ...+++|+.|+++++...-...+..+++|+.|+|+
T Consensus 155 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred CCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 7777777766 2222 33566777777766531111235666677766665
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.94 E-value=7e-10 Score=114.25 Aligned_cols=190 Identities=12% Similarity=0.076 Sum_probs=137.1
Q ss_pred CccccccCcccEEEecccccc--CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc----cceeecc
Q 042962 126 PQLVFYAKSMSLLGLDSCKLE--SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR----GLKHLEL 198 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~~--~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~----~l~~l~i 198 (377)
|..+..+++|+.|+|++|.+. .| ..+.++++|++|++++|.+.+-. ...+..+|.|+.|.+.++. +..+-.+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhccccccccccCCccc
Confidence 445667899999999999873 34 36788999999999999773211 1236689999999999874 1222345
Q ss_pred CCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc-cCC-----c----eeeccCCCccccchh---------hhc
Q 042962 199 PNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLP-----H----ISVVPCKNLKKLKLC---------QEI 256 (377)
Q Consensus 199 ~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~-----~----~~~~~~~~L~~L~L~---------~~l 256 (377)
..+++|+.|++++|. .+. .....+++|++|+++++. ... + ..+.++++|+.|+++ ..+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 567999999999987 222 223467899999998774 111 1 126788899999887 246
Q ss_pred cCCCCCceEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCc--cccccceEEEEecCC
Q 042962 257 VDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSS--TALALSEIALVFNPD 322 (377)
Q Consensus 257 ~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l--~~~~L~~l~l~~n~~ 322 (377)
.++++|+.|++++|.++.+. +.++.+|+.+.+..+++..+. |..+ ..++|+.++++.|+-
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE------KKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC------HHHHHHHHTTCSEEECTTCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC------hhHhcccccccCEEEccCCCc
Confidence 88999999999999999875 345678888888887765432 1111 125799999998865
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=2.6e-08 Score=99.14 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=62.4
Q ss_pred CCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--ccee--eccCCCCCCcEEEEcccC--C-Cch-hhhcCC
Q 042962 152 VTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKH--LELPNLGKLKEFKVYDEY--G-LEQ-VYIQGM 223 (377)
Q Consensus 152 ~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~--l~i~~l~~L~~L~i~~~~--~-~~~-~~~~~p 223 (377)
..+++|++|++++|.+++..+.. +..+++|++|++++|. ++.. -.+..+++|+.|++++|. . ++. .....+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 34455555555555543322222 3445555555555442 1111 112334555555555554 1 111 011234
Q ss_pred cccEEEEeccc--cCCceeeccCCCccccchh--------hhccCCCCCceEeccCCccceEE---ccCccccccccccc
Q 042962 224 NAHSVHIIGLH--MLPHISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCT 290 (377)
Q Consensus 224 ~L~~L~l~g~~--~~~~~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~ 290 (377)
+|+.|+++++. +..+..+. ++|+.|+++ ..+.++++|+.|++++|.++.+. +..+++|+.+.+..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 55555554432 11111111 344444444 23446677777777777776554 33445566666555
Q ss_pred CC
Q 042962 291 PN 292 (377)
Q Consensus 291 ~~ 292 (377)
+.
T Consensus 478 N~ 479 (520)
T 2z7x_B 478 NP 479 (520)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.91 E-value=1.4e-09 Score=94.40 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred cccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEE
Q 042962 130 FYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEF 207 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L 207 (377)
..+++|+.|++++|.+...+.+..+++|++|++.+|.+.. +. .++.+++|++|++++|. +...-.+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3466777777777766432356677777777777775522 11 25667777777777663 1112334456777777
Q ss_pred EEcccCC---CchhhhcCCcccEEEEecc
Q 042962 208 KVYDEYG---LEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 208 ~i~~~~~---~~~~~~~~p~L~~L~l~g~ 233 (377)
.+++|.. .......+++|++|+++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 7777761 1122234677777777655
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=2.1e-09 Score=96.87 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=100.4
Q ss_pred CcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEE
Q 042962 133 KSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKV 209 (377)
Q Consensus 133 ~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i 209 (377)
.+.++++++++.+. .|..+. ++|+.|+|.++.+.+-.. ..+.++++|+.|+++++. ++..-.+..+++|+.|.+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 56788999988874 343333 689999999998843222 236789999999999873 222222455789999999
Q ss_pred cccC--CCc-hhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE---ccCccc
Q 042962 210 YDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL---FIGYDT 282 (377)
Q Consensus 210 ~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~ 282 (377)
.++. .+. .....+++|++|+++++. ..++.. .+.++++|+.|++++|.++.+. +.++.+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--------------HhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 9987 222 223457889999997764 222111 2344555666666666555543 333445
Q ss_pred ccccccccCCcceEEEcccccccCcc-ccccceEEEEecCC
Q 042962 283 LDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNPD 322 (377)
Q Consensus 283 L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~~ 322 (377)
|+.+++..+++..+ .+..+. .++|+.++++.|+-
T Consensus 157 L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQLQSV------PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCSCC------CTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCcCCcc------CHHHHhCCCCCCEEEeeCCce
Confidence 55555555543221 111122 24566666666643
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.87 E-value=4.3e-09 Score=106.39 Aligned_cols=20 Identities=5% Similarity=0.363 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHhhcC-ChhHH
Q 042962 16 SALLAPILHHILSFL-SIEQV 35 (377)
Q Consensus 16 S~LPD~lL~~ILs~L-p~~da 35 (377)
++||||+|.+||+|| |++|+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~ 34 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDR 34 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHH
Confidence 489999999999999 89888
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=4.2e-09 Score=95.84 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=88.8
Q ss_pred ccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee-ccCCCCCCcEE
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL-ELPNLGKLKEF 207 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l-~i~~l~~L~~L 207 (377)
+..+++|+.|++++|.+...+.+..+++|++|+|++|.+++-. . +.++++|+.|+++++. +..+ .+.. ++|+.|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc-CcccEE
Confidence 4567888888888887754446778888889998888874321 2 6788888888888773 2111 2233 788888
Q ss_pred EEcccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccc
Q 042962 208 KVYDEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 208 ~i~~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~ 273 (377)
.+++|. .++. ...+++|+.|+++++. ..++ .+..+++|+.|+++ ..+.++++|+.|++++|.+.
T Consensus 112 ~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence 888887 2322 2356788888887664 2222 34555566665555 23455566666666665544
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.82 E-value=1.1e-07 Score=95.80 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=21.7
Q ss_pred ccCCCCCceEeccCCccceEE---ccCcccccccccccCC
Q 042962 256 IVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPN 292 (377)
Q Consensus 256 l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~ 292 (377)
+.++++|+.|++++|+++.+. +..+++|+.+.+..+.
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 345667777777777766544 3344555555555544
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.81 E-value=2.4e-09 Score=93.56 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+ .++|++|+|++|.+. .++ .+.++++|++|++.++.+.+ .....+.++++|++|+++++. ++..-
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 345566554 468999999999874 333 46789999999999998742 122345778999999999873 22222
Q ss_pred ccCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 197 ELPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
.+..+++|+.|.+.++. .+. ......++|++|+++++. ..++. ..+.++++|+.|++++|.+
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------------GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------TTTTTCTTCCEEECCSCCB
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--------------HHhccCCCccEEEecCCCe
Confidence 23456889999998886 222 222456888888887653 11111 1234566677777776654
Q ss_pred ceEEccCcccccccccccCC
Q 042962 273 KSFLFIGYDTLDELKLCTPN 292 (377)
Q Consensus 273 ~~l~l~~c~~L~~l~l~~~~ 292 (377)
. +.|++|+.+.+..++
T Consensus 161 ~----~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 161 D----CTCPGIRYLSEWINK 176 (208)
T ss_dssp C----CCTTTTHHHHHHHHH
T ss_pred e----cCCCCHHHHHHHHHh
Confidence 3 345556655544433
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.80 E-value=2.9e-08 Score=101.23 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=29.7
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceee
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~ 167 (377)
.+++.|++.-. ....+|. .+++|++|+|++|.+...+. .+++|++|+|++|.+
T Consensus 61 ~~L~~L~L~~N--------~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 61 AHITTLVIPDN--------NLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL 113 (622)
T ss_dssp TTCSEEEECSC--------CCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCC--------CCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcC
Confidence 46677776521 2334554 35667777777766532112 556666666666655
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=2.5e-08 Score=101.64 Aligned_cols=59 Identities=22% Similarity=0.093 Sum_probs=32.0
Q ss_pred cCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 123 YNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 123 ~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
..+|..+. ++|+.|+|++|.+...+. .+++|++|+|++|.++. +-..+++|++|++++|
T Consensus 53 ~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 53 TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPVLPPGLLELSIFSN 111 (622)
T ss_dssp SCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-----CCCCCTTCCEEEECSC
T ss_pred CccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCC
Confidence 35555543 566666666666532122 45666666666666531 1114566666666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.79 E-value=7.6e-10 Score=106.23 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=19.3
Q ss_pred cccCcccEEEeccccccC------CCCCCCCCCCCeeeccceee
Q 042962 130 FYAKSMSLLGLDSCKLES------PRGNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~------p~~~~~l~~L~~L~L~~~~~ 167 (377)
..+++|++|+|++|.+.. |..+..+++|++|+|++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 345555666665555432 11234455556666655555
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.76 E-value=1.9e-08 Score=95.28 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=22.2
Q ss_pred ccCCCCCceEeccCCccceEEccCcccccccc
Q 042962 256 IVDCMKLRSIKISSFCLKSFLFIGYDTLDELK 287 (377)
Q Consensus 256 l~~~~~L~~L~i~~~~L~~l~l~~c~~L~~l~ 287 (377)
+.++++|+.|++++|+++.+......+|+.+.
T Consensus 198 f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp TTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred hccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 46677888888888888777655555555443
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.76 E-value=7.5e-09 Score=95.56 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=81.4
Q ss_pred CcCCCccccccCcccEEEeccccccC--CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee--c
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLES--PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL--E 197 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l--~ 197 (377)
...+|..+. ++++.|+|++|.+.. +..+.++++|+.|+|+++.+++- .. .+.+++|+.|+++++. +..+ .
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~l~~~ 95 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQ-LQSLPLL 95 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSC-CSSCCCC
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCEEECCCCc-CCcCchh
Confidence 344555443 566777777666521 23456667777777777665321 11 1456677777776652 1111 2
Q ss_pred cCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc-cCCcee-eccCCCccccchh---------hhccCCCCCc
Q 042962 198 LPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH-MLPHIS-VVPCKNLKKLKLC---------QEIVDCMKLR 263 (377)
Q Consensus 198 i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~-~~~~~~-~~~~~~L~~L~L~---------~~l~~~~~L~ 263 (377)
+..+++|+.|.++++. .+. .....+++|++|.++++. ..++.. +..+++|+.|+++ ..+.++++|+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 2335667777776665 121 222345667777776553 222221 4556666666665 2245567777
Q ss_pred eEeccCCccceE
Q 042962 264 SIKISSFCLKSF 275 (377)
Q Consensus 264 ~L~i~~~~L~~l 275 (377)
.|++++|.++.+
T Consensus 176 ~L~L~~N~l~~i 187 (290)
T 1p9a_G 176 TLLLQENSLYTI 187 (290)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCcCCcc
Confidence 777777776654
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=100.88 Aligned_cols=231 Identities=14% Similarity=0.053 Sum_probs=153.0
Q ss_pred CceEEEEEEeccCCccchhhHHHHHHHHHhCCceEEEEEeeCCCCCCCCCCcCCCccc-----cccCcccEEEecccccc
Q 042962 72 SLEKFTFIVQLSDDVKFVSSIYRCLRYAVETNVKELKLGFCCPHSNYPDSYYNLPQLV-----FYAKSMSLLGLDSCKLE 146 (377)
Q Consensus 72 ~i~~l~l~~~~~~~~~~~~~i~~wi~~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l-----~~~~~L~~L~L~~~~~~ 146 (377)
.++.+.+.... .. ...+..+........++.+++.... -.-.+|..+ ..+++|+.++++++.+.
T Consensus 221 ~L~~L~l~~~~---l~-~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~ 289 (520)
T 2z7x_B 221 KLSNLTLNNIE---TT-WNSFIRILQLVWHTTVWYFSISNVK-------LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289 (520)
T ss_dssp TCCEEEEEEEE---EE-HHHHHHHHHHHHTSSCSEEEEEEEE-------EESCCCCCCCCCCSCCCCEEEEEEEEECCCC
T ss_pred chhhccccccc---cC-HHHHHHHHHHhhhCcccEEEeeccc-------ccCccccchhhcccccCceeEecccccccee
Confidence 46666664431 11 2334444444445678888886432 112567766 77899999999988875
Q ss_pred CCC-CCCCC---CCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEcccC--CCch-
Q 042962 147 SPR-GNVTL---SCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--GLEQ- 217 (377)
Q Consensus 147 ~p~-~~~~l---~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~~~~- 217 (377)
.|. .+..+ ++|+.|+++++.+.+.. ....+++|++|++++|. +...-.+..+++|+.|.+.+|. .++.
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 542 22222 57999999999874321 12679999999999884 2222344567999999999997 2112
Q ss_pred --hhhcCCcccEEEEeccc-cC-Ccee-eccCCCccccchh-h-----hccCC-CCCceEeccCCccceEE--ccCcccc
Q 042962 218 --VYIQGMNAHSVHIIGLH-ML-PHIS-VVPCKNLKKLKLC-Q-----EIVDC-MKLRSIKISSFCLKSFL--FIGYDTL 283 (377)
Q Consensus 218 --~~~~~p~L~~L~l~g~~-~~-~~~~-~~~~~~L~~L~L~-~-----~l~~~-~~L~~L~i~~~~L~~l~--l~~c~~L 283 (377)
....+++|++|+++++. .. ++.. +..+++|+.|+++ . ....+ ++|+.|++++|+++.+. +..+++|
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L 446 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCC
Confidence 23467999999998875 22 4443 6677889999887 1 11233 69999999999988653 4466778
Q ss_pred cccccccCCcceEEEcccccccC-cc-ccccceEEEEecCCC
Q 042962 284 DELKLCTPNLSIFKYHGDLISFS-ST-ALALSEIALVFNPDN 323 (377)
Q Consensus 284 ~~l~l~~~~L~~~~~~~~~~p~~-l~-~~~L~~l~l~~n~~~ 323 (377)
+.+.+..+++.. +|.. +. .++|++++++.|+-.
T Consensus 447 ~~L~L~~N~l~~-------l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 447 QELNVASNQLKS-------VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCcCCc-------cCHHHhccCCcccEEECcCCCCc
Confidence 888887777543 4432 32 368999999988653
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.72 E-value=1.3e-09 Score=104.65 Aligned_cols=218 Identities=15% Similarity=0.096 Sum_probs=139.4
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEecccccc-----CCCC-------CCCCCCCCeeeccceeeCh
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLE-----SPRG-------NVTLSCLRELRPRHVCADD 169 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-----~p~~-------~~~l~~L~~L~L~~~~~~~ 169 (377)
.+++.|++....-. ......++..+..+++|++|+|++|.+. .|.. +..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp SCCCEEECTTSEEC---HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred CCccEEECCCCCCC---HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 56888877521100 0001123344567899999999987532 1222 2678999999999999855
Q ss_pred H---HHHHHhcCCcccccccccccccc----eeec--cCCC---------CCCcEEEEcccCC----Cc---hhhhcCCc
Q 042962 170 Q---VIKDLISGCPLIEFISIISCRGL----KHLE--LPNL---------GKLKEFKVYDEYG----LE---QVYIQGMN 224 (377)
Q Consensus 170 ~---~l~~l~~~cp~Le~L~L~~c~~l----~~l~--i~~l---------~~L~~L~i~~~~~----~~---~~~~~~p~ 224 (377)
. .+...+..+++|+.|+|++|.-. ..+. +..+ ++|+.|.+.+|.. .+ .....+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 3 34455788999999999988411 1111 1112 7999999999871 11 12235789
Q ss_pred ccEEEEeccccC-------CceeeccCCCccccchh-------------hhccCCCCCceEeccCCccceE-------Ec
Q 042962 225 AHSVHIIGLHML-------PHISVVPCKNLKKLKLC-------------QEIVDCMKLRSIKISSFCLKSF-------LF 277 (377)
Q Consensus 225 L~~L~l~g~~~~-------~~~~~~~~~~L~~L~L~-------------~~l~~~~~L~~L~i~~~~L~~l-------~l 277 (377)
|++|.++++... .+..+..+++|++|+|+ ..+.++++|+.|++++|.+... .+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 999999776421 22146788899999887 2357889999999999987653 12
Q ss_pred --cCcccccccccccCCcceEEEcccccccCc-c-ccccceEEEEecCCCC
Q 042962 278 --IGYDTLDELKLCTPNLSIFKYHGDLISFSS-T-ALALSEIALVFNPDNI 324 (377)
Q Consensus 278 --~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~-~~~L~~l~l~~n~~~~ 324 (377)
+.+++|+.+.++.+.+..- ....+|..+ . .++|+.|+++.|.-..
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 3367788887776664210 001355444 3 3789999998775543
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.71 E-value=1.9e-09 Score=108.88 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=94.9
Q ss_pred cccCcccEEEeccccccCC---CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccc--------cccceeec-
Q 042962 130 FYAKSMSLLGLDSCKLESP---RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIIS--------CRGLKHLE- 197 (377)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~--------c~~l~~l~- 197 (377)
..+++|++|+|++|.+... ....++++|++|++.++ +.+..+..+..+|++|++|++.. |..+....
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 3566777777776663210 11345677777777766 54555566556677777777733 22221111
Q ss_pred --c-CCCCCCcEEEEcccC----CCchhhhcCCcccEEEEe--c-----cccCCce------eeccCCCccccchh----
Q 042962 198 --L-PNLGKLKEFKVYDEY----GLEQVYIQGMNAHSVHII--G-----LHMLPHI------SVVPCKNLKKLKLC---- 253 (377)
Q Consensus 198 --i-~~l~~L~~L~i~~~~----~~~~~~~~~p~L~~L~l~--g-----~~~~~~~------~~~~~~~L~~L~L~---- 253 (377)
+ .++++|+.|.+..+. ....+...+|+|+.|+++ + .....+. .+.+|++|+.|+++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~ 444 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCccc
Confidence 1 125777777554443 112222346778888776 3 1111111 14556677777665
Q ss_pred ----hhccC-CCCCceEeccCCccceEEc----cCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecCC
Q 042962 254 ----QEIVD-CMKLRSIKISSFCLKSFLF----IGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNPD 322 (377)
Q Consensus 254 ----~~l~~-~~~L~~L~i~~~~L~~l~l----~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~~ 322 (377)
..++. +++|+.|+++++.+....+ .+|++|+.+.+..+.+ .+..+..... .++|+.|+++.|+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-----~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-----GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-----CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-----cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 12222 6677777776665432111 3344555554443332 1112222222 36788888876644
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.70 E-value=4.3e-08 Score=98.88 Aligned_cols=172 Identities=11% Similarity=0.070 Sum_probs=107.8
Q ss_pred HHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcC
Q 042962 99 AVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISG 178 (377)
Q Consensus 99 a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 178 (377)
+...+++.|++... ....+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.+++ +.. +.+
T Consensus 56 C~~~~L~~L~Ls~n--------~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~ 120 (571)
T 3cvr_A 56 CLINQFSELQLNRL--------NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA 120 (571)
T ss_dssp HHHTTCSEEECCSS--------CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT
T ss_pred cccCCccEEEeCCC--------CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc
Confidence 34457888877522 2345777654 78999999988875333 557889999999998843 222 322
Q ss_pred CcccccccccccccceeeccCCCCCCcEEEEcccCCCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-hhc
Q 042962 179 CPLIEFISIISCRGLKHLELPNLGKLKEFKVYDEYGLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-QEI 256 (377)
Q Consensus 179 cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-~~l 256 (377)
+|+.|+++++. +..+.- .+++|+.|.+++|. +..+....++|+.|+++++. ..++. +. ++|+.|+|+ ..|
T Consensus 121 --~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 121 --SLKHLDVDNNQ-LTMLPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp --TCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred --CCCEEECCCCc-CCCCCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence 88889888773 222222 36889999988887 11122246788888887764 33333 33 677777776 222
Q ss_pred cCCC----CC-------ceEeccCCccceEE--ccCcccccccccccCCc
Q 042962 257 VDCM----KL-------RSIKISSFCLKSFL--FIGYDTLDELKLCTPNL 293 (377)
Q Consensus 257 ~~~~----~L-------~~L~i~~~~L~~l~--l~~c~~L~~l~l~~~~L 293 (377)
..++ +| +.|++++|.++.+. +..+++|+.+.++.+.+
T Consensus 193 ~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 2222 45 77777777777653 44455666666666654
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=2.3e-09 Score=97.59 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=102.7
Q ss_pred ccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEE
Q 042962 131 YAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFK 208 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~ 208 (377)
.+.+++.+.++++.+...+.+..+++|+.|++.++.+.. +. -+..+++|+.|+++++. ++.. +..+++|+.|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 355677778887776433356788999999999998843 22 36789999999999883 3332 66789999999
Q ss_pred EcccC--CCchhhhcCCcccEEEEeccccCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccceEE-cc
Q 042962 209 VYDEY--GLEQVYIQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKSFL-FI 278 (377)
Q Consensus 209 i~~~~--~~~~~~~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~l~-l~ 278 (377)
+++|. .++.+.. ++|+.|+++++.-.-...+..+++|+.|+++ ..+.++++|+.|++++|.++.+. +.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~ 169 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTST
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhc
Confidence 99998 3333322 8999999987752211236677777777776 33566677777777777766542 22
Q ss_pred Ccccccccccc
Q 042962 279 GYDTLDELKLC 289 (377)
Q Consensus 279 ~c~~L~~l~l~ 289 (377)
.+.+|+.+.+.
T Consensus 170 ~l~~L~~L~l~ 180 (263)
T 1xeu_A 170 RLKKVNWIDLT 180 (263)
T ss_dssp TCCCCCEEEEE
T ss_pred cCCCCCEEeCC
Confidence 33344444443
No 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.67 E-value=1.2e-07 Score=93.20 Aligned_cols=112 Identities=17% Similarity=0.074 Sum_probs=53.8
Q ss_pred CcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEc
Q 042962 133 KSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVY 210 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~ 210 (377)
++|++|++++|.+...+.+.++++|++|++++|.+.+ + -...++|++|+++++. ++. .+..+++|+.|.+.
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l---p~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--L---PDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--c---CCCcccccEEECcCCcCCcCc--cccCCCCCCEEECC
Confidence 4566666666554322245566666666666665532 1 1122456666665552 111 23345566666666
Q ss_pred ccCCCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh
Q 042962 211 DEYGLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 211 ~~~~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~ 253 (377)
+|. +..+....++|++|+++++. ..++ .+..+++|++|+++
T Consensus 204 ~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 204 NNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp SSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECC
Confidence 554 11111122456666665543 2222 24555556655554
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.66 E-value=1.8e-08 Score=84.87 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCceEEEEEeeCCCCCCCCCCc--CCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYY--NLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGC 179 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~--~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~c 179 (377)
.++++|++.-. ... .+|..+..+++|+.|+|++|.+.....+..+++|++|++++|.+.+. +...+.++
T Consensus 24 ~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHC
T ss_pred ccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhC
Confidence 45677766521 222 56766677788888888888764445667788888888888877432 33445567
Q ss_pred cccccccccccc--ccee-eccCCCCCCcEEEEcccC
Q 042962 180 PLIEFISIISCR--GLKH-LELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 180 p~Le~L~L~~c~--~l~~-l~i~~l~~L~~L~i~~~~ 213 (377)
++|+.|++++|. ++.. -.+..+++|+.|.+.+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 778888777763 1111 123345666666666665
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.65 E-value=4.3e-08 Score=98.71 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=72.5
Q ss_pred CCcccccccccccc--cceeeccCCCCCCcEEEEcccC--CCchh---hhcCCcccEEEEeccc-cC-Ccee-eccCCCc
Q 042962 178 GCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDEY--GLEQV---YIQGMNAHSVHIIGLH-ML-PHIS-VVPCKNL 247 (377)
Q Consensus 178 ~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~~--~~~~~---~~~~p~L~~L~l~g~~-~~-~~~~-~~~~~~L 247 (377)
.+++|+.|+++++. +...-.+..+++|+.|.+.+|. .++.+ ....++|++|+++++. .. ++.. +..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 44555555555442 1111122234555555555544 11111 1234555555554443 11 2221 3444555
Q ss_pred cccchh------hhccCC-CCCceEeccCCccceEE--ccCcccccccccccCCcceEEEcccccccC-cc-ccccceEE
Q 042962 248 KKLKLC------QEIVDC-MKLRSIKISSFCLKSFL--FIGYDTLDELKLCTPNLSIFKYHGDLISFS-ST-ALALSEIA 316 (377)
Q Consensus 248 ~~L~L~------~~l~~~-~~L~~L~i~~~~L~~l~--l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~-l~-~~~L~~l~ 316 (377)
+.|+++ .....+ ++|+.|++++|.++.+. +.++++|+.+++..+++.. +|.. +. .++|+.++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-------VPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-------CCTTSTTTCTTCCCEE
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-------CCHHHHhcCCCCCEEE
Confidence 555554 112233 58899999999888653 3456678888887777543 3432 32 36799999
Q ss_pred EEecCCC
Q 042962 317 LVFNPDN 323 (377)
Q Consensus 317 l~~n~~~ 323 (377)
++.|+-.
T Consensus 504 l~~N~~~ 510 (562)
T 3a79_B 504 LHDNPWD 510 (562)
T ss_dssp CCSCCBC
T ss_pred ecCCCcC
Confidence 9987653
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.62 E-value=2.4e-07 Score=90.95 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=55.9
Q ss_pred CcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEEccc
Q 042962 133 KSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~ 212 (377)
++|++|++++|.+...+.. .++|++|++++|.+.+ +.. ++++++|++|+++++. +..+... .++|+.|++.+|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp~~-~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKLPDL-PPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCCCCC-CTTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-CcccCCC-cccccEEECcCC
Confidence 4455555555443211111 1355555555555432 112 4455555555555542 2112111 245555555555
Q ss_pred C--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-------hhccCCCCCceEeccCCccce
Q 042962 213 Y--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-------QEIVDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 213 ~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-------~~l~~~~~L~~L~i~~~~L~~ 274 (377)
. .++. ...+++|+.|.++++. ..++. ...+|++|+++ ..++++++|+.|++++|+++.
T Consensus 184 ~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 184 QLEELPE-LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred cCCcCcc-ccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 4 2221 1234555555554442 11111 11244444443 123455556666666555543
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.62 E-value=1.5e-08 Score=83.44 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.+|..+..+++|+.|++++|.+.....+..+++|++|++++|.+.+. +...+..+++|+.|++++|
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTS
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCC
Confidence 45555555666666666666553334455566666666666665332 2333444566666666655
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.60 E-value=4.6e-08 Score=86.44 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=82.5
Q ss_pred CCcCCCccccccCcccEEEeccccccC--C-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--ccee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLES--P-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKH 195 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~~--p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~ 195 (377)
....+|..+ ...++.|+|++|.+.. + ..+.++++|+.|+|++|.+++-. ...+.++++|+.|+|+++. ++..
T Consensus 22 ~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 22 KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCH
Confidence 344567654 3456888888887632 2 23678888888888888774321 1235677888888888763 2222
Q ss_pred eccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEecccc-CCceeeccCCCccccchhhhccCCCCCceEeccCCc
Q 042962 196 LELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLHM-LPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFC 271 (377)
Q Consensus 196 l~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~~-~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~ 271 (377)
-.+.++++|++|.++++. .+ +.....+++|+.|+++++.. .++. ..+.++++|+.|++++|.
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP--------------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT--------------TTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH--------------HHhcCCCCCCEEEecCcC
Confidence 224456778888887776 11 12223456777777755431 1100 234566778888888877
Q ss_pred cc
Q 042962 272 LK 273 (377)
Q Consensus 272 L~ 273 (377)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 65
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=5.9e-08 Score=86.23 Aligned_cols=136 Identities=11% Similarity=0.006 Sum_probs=91.7
Q ss_pred CCcCCCccccccCcccEEEeccccccC--CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLES--PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+ .++|++|+|++|.+.. |..+.++++|+.|+|++|.+.. .....+.++++|+.|+|+++. ++..-
T Consensus 30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCccChh
Confidence 456677655 3889999999998742 3467889999999999998832 112346778999999998873 22222
Q ss_pred ccCCCCCCcEEEEcccC--CCchhhhcCCcccEEEEecccc-CCceeeccCCCccccchhhhccCCCCCceEeccCCccc
Q 042962 197 ELPNLGKLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGLHM-LPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~~~-~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~ 273 (377)
.+..+++|+.|.+.++. .++......++|+.|+++++.. .++. ..+.++++|+.|++++|.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--------------GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT--------------TTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH--------------HHHhCCCCCCEEEeeCCCcc
Confidence 23456889999998887 3333335667888888866531 1110 13456777888888888765
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.59 E-value=6.3e-08 Score=98.13 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCCcEEEEcccC---CCchhhhcCCcccEEEEeccc--c-CCceeeccCCCccccchh---------hhccCCCCCceE
Q 042962 201 LGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGLH--M-LPHISVVPCKNLKKLKLC---------QEIVDCMKLRSI 265 (377)
Q Consensus 201 l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~~--~-~~~~~~~~~~~L~~L~L~---------~~l~~~~~L~~L 265 (377)
+++++.+.+..+. .........++|+.|.++++. . ..+..+..+++|++|+|+ ..++++++|+.|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 4566666666665 122333456778888887663 1 233346778888888887 346788899999
Q ss_pred eccCCccceEE---ccCcccccccccccCCcceEEEcccccccCccc--cccceEEEEecCC
Q 042962 266 KISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSSTA--LALSEIALVFNPD 322 (377)
Q Consensus 266 ~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~~--~~L~~l~l~~n~~ 322 (377)
++++|+++.+. +.++++|+.++++.+++... .|..+.. ++|+.++++.|+-
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------KKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC------CSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC------CHHHHHhhhCcCCEEEeeCCCC
Confidence 99998888764 45667788888887776432 2333322 4789999987764
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.58 E-value=8.4e-08 Score=97.20 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=85.8
Q ss_pred CCcCCCccccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee--
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL-- 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l-- 196 (377)
....+|..+ -+++++|+|++|.+. .| ..+.++++|++|+|++|.+..- ....+.++++|++|+|+++. +..+
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~-l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-IQSLAL 117 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred CcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc-CCCCCH
Confidence 455677654 357899999988873 33 3688899999999999877321 12236778999999998874 3333
Q ss_pred -ccCCCCCCcEEEEcccC--CCch-hhhcCCcccEEEEeccc-c--CCceeeccCCCccccchh
Q 042962 197 -ELPNLGKLKEFKVYDEY--GLEQ-VYIQGMNAHSVHIIGLH-M--LPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 197 -~i~~l~~L~~L~i~~~~--~~~~-~~~~~p~L~~L~l~g~~-~--~~~~~~~~~~~L~~L~L~ 253 (377)
.+.++++|++|++.+|. .++. ....+++|++|+++++. . ..+..++.+++|++|+++
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 24567889999998886 2222 22456888888887764 1 223334556666666655
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=3.2e-09 Score=101.04 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=27.0
Q ss_pred CcccEEEeccccccCC-CC-----CCCC-CCCCeeeccceeeCh---HHHHHHhcC-Cccccccccccc
Q 042962 133 KSMSLLGLDSCKLESP-RG-----NVTL-SCLRELRPRHVCADD---QVIKDLISG-CPLIEFISIISC 190 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~p-~~-----~~~l-~~L~~L~L~~~~~~~---~~l~~l~~~-cp~Le~L~L~~c 190 (377)
++|++|+|++|.+... +. +..+ ++|++|+|++|.+++ ..+...+.. +++|++|++++|
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 5566666665554311 10 2223 456666666655532 222222333 345666666554
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.56 E-value=7.8e-08 Score=83.83 Aligned_cols=138 Identities=12% Similarity=0.060 Sum_probs=89.5
Q ss_pred cEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee---ccCCCCCCcEEEEcc
Q 042962 136 SLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPNLGKLKEFKVYD 211 (377)
Q Consensus 136 ~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~l~~L~~L~i~~ 211 (377)
+.++.+++.+. .|.. -.++|++|+++++.+++ .....+.++++|++|+++++. +..+ .+..+++|+.|++.+
T Consensus 10 ~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCC--CCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCC
Confidence 45666666653 3322 35689999999998852 122346789999999999873 2222 234568999999998
Q ss_pred cC--CCch-hhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE---ccCccccc
Q 042962 212 EY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL---FIGYDTLD 284 (377)
Q Consensus 212 ~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~ 284 (377)
+. .+.. .....++|++|+++++. ..++. ..+.++++|+.|++++|.++.+. +..+.+|+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD--------------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH--------------hHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 87 2222 22456888888886653 11110 13466788888999888887654 34456677
Q ss_pred ccccccC
Q 042962 285 ELKLCTP 291 (377)
Q Consensus 285 ~l~l~~~ 291 (377)
.+.+..+
T Consensus 152 ~L~l~~N 158 (208)
T 2o6s_A 152 YIWLHDN 158 (208)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 7666554
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=1.4e-08 Score=96.57 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=120.0
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCC-----ccccccC-cccEEEeccccccCC--CCCCC-----CCCCCeeeccceeeC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLP-----QLVFYAK-SMSLLGLDSCKLESP--RGNVT-----LSCLRELRPRHVCAD 168 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~~~~p--~~~~~-----l~~L~~L~L~~~~~~ 168 (377)
.++++|++... .....+ ..+..++ +|++|+|++|.+... ..+.. +++|++|+|++|.++
T Consensus 22 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLN--------NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTS--------CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCceEEEccCC--------CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 45777777521 223333 3344566 899999999887432 12233 288999999999874
Q ss_pred h---HHHHHHhcCC-cccccccccccc--ccee--e--ccCC-CCCCcEEEEcccC-C---Cchh---hhcCC-cccEEE
Q 042962 169 D---QVIKDLISGC-PLIEFISIISCR--GLKH--L--ELPN-LGKLKEFKVYDEY-G---LEQV---YIQGM-NAHSVH 229 (377)
Q Consensus 169 ~---~~l~~l~~~c-p~Le~L~L~~c~--~l~~--l--~i~~-l~~L~~L~i~~~~-~---~~~~---~~~~p-~L~~L~ 229 (377)
+ ..+...+..+ ++|+.|++++|. .... + .+.. .++|++|++++|. . ...+ ....+ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 3 4444555666 899999999874 1111 1 1222 2589999999887 1 1111 12334 899999
Q ss_pred Eeccc-c-CCce----eeccC-CCccccchh-------------hhccC-CCCCceEeccCCccceEEc-------cCcc
Q 042962 230 IIGLH-M-LPHI----SVVPC-KNLKKLKLC-------------QEIVD-CMKLRSIKISSFCLKSFLF-------IGYD 281 (377)
Q Consensus 230 l~g~~-~-~~~~----~~~~~-~~L~~L~L~-------------~~l~~-~~~L~~L~i~~~~L~~l~l-------~~c~ 281 (377)
++++. . ..+. .+..+ .+|+.|+|+ ..+.. .++|+.|++++|.+..... ..+.
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 97764 1 1111 13344 488888887 11222 4588888888888765432 2333
Q ss_pred cccccccccCCcceEEEcc-cccccCcc-ccccceEEEEecCCC
Q 042962 282 TLDELKLCTPNLSIFKYHG-DLISFSST-ALALSEIALVFNPDN 323 (377)
Q Consensus 282 ~L~~l~l~~~~L~~~~~~~-~~~p~~l~-~~~L~~l~l~~n~~~ 323 (377)
+|+.+.++.+.+....-.+ ..++..+. .++|++++++.|.-.
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 4444444433321110000 11122222 356888888877543
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=3.2e-08 Score=83.27 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=62.1
Q ss_pred cCcccEEEecccccc---CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccce--eeccCCCCCCcE
Q 042962 132 AKSMSLLGLDSCKLE---SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLK--HLELPNLGKLKE 206 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~---~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~--~l~i~~l~~L~~ 206 (377)
.++|+.|+|++|.+. .|..+..+++|+.|++.+|.+.+- ..+..+++|+.|++++|.-.. +-.+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 467899999988874 444567888899999988887433 346667777777777663111 111112567777
Q ss_pred EEEcccC--CCc--hhhhcCCcccEEEEecc
Q 042962 207 FKVYDEY--GLE--QVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 207 L~i~~~~--~~~--~~~~~~p~L~~L~l~g~ 233 (377)
|.+.+|. .++ .....+++|+.|+++++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 7777665 222 12234566666666554
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.56 E-value=1.3e-07 Score=95.42 Aligned_cols=168 Identities=15% Similarity=0.041 Sum_probs=114.0
Q ss_pred cCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeeccCCCCCCcEEEEc
Q 042962 132 AKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKVY 210 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~ 210 (377)
+.+|+.|+|++|.+. +|..+ +++|++|+|++|.++. +. ..+++|+.|+++++. +..+..- ..+|+.|.++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~l-~~~L~~L~Ls 128 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPEL-PASLKHLDVD 128 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCC-CTTCCEEECC
T ss_pred cCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcchh-hcCCCEEECC
Confidence 358999999999874 44333 4899999999998852 22 568999999999883 2222221 1499999999
Q ss_pred ccC--CCchhhhcCCcccEEEEeccc-cCCceeeccCCCccccchh-hhccCC----CCCceEeccCCccceEEccCccc
Q 042962 211 DEY--GLEQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLC-QEIVDC----MKLRSIKISSFCLKSFLFIGYDT 282 (377)
Q Consensus 211 ~~~--~~~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~-~~l~~~----~~L~~L~i~~~~L~~l~l~~c~~ 282 (377)
+|. .++. ..++|+.|+++++. ..++. .+++|+.|+++ ..+..+ ++|+.|++++|.++.+.- -..+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~~ 201 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPVR 201 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC--
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHHh
Confidence 997 3333 67899999998875 33332 56788888887 222222 688899999988875443 2225
Q ss_pred c-------cccccccCCcceEEEcccccccCc-cccccceEEEEecCC
Q 042962 283 L-------DELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFNPD 322 (377)
Q Consensus 283 L-------~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n~~ 322 (377)
| +.+.++.+++. .+|..+ ..++|+.|+++.|+-
T Consensus 202 L~~~~~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSC
T ss_pred hhcccccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcC
Confidence 5 66666666654 344332 236788888887755
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.56 E-value=1.1e-07 Score=84.45 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=94.1
Q ss_pred cccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee---ccCCCCCCcEEEE
Q 042962 134 SMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPNLGKLKEFKV 209 (377)
Q Consensus 134 ~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~l~~L~~L~i 209 (377)
+-+.++.+++.+. +|..+ .++|++|+|+++.+.+-. ...+.++++|+.|+|+++. +..+ .+..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEEC
Confidence 3567888887763 44333 389999999999885422 2336789999999999874 2322 2345789999999
Q ss_pred cccC--CCch-hhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE---ccCccc
Q 042962 210 YDEY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL---FIGYDT 282 (377)
Q Consensus 210 ~~~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~ 282 (377)
+++. .+.. .....++|++|.++++. ..++ ..+.++++|+.|++++|.++.+. +..+.+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP---------------RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC---------------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccC---------------cccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 9987 2222 22357889999887653 2111 23456778888888888888765 344556
Q ss_pred ccccccccCC
Q 042962 283 LDELKLCTPN 292 (377)
Q Consensus 283 L~~l~l~~~~ 292 (377)
|+.+.+..+.
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 6666665544
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.54 E-value=9.7e-08 Score=84.31 Aligned_cols=136 Identities=9% Similarity=0.085 Sum_probs=90.2
Q ss_pred CCcCCCccccccCcccEEEecccccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|+.|+|++|.+. .+ ..+.++++|+.|+|++|.+.+-. ...+.++++|+.|+|+++. .+..-
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHh
Confidence 4556776653 68999999998873 33 36788999999999999874321 2236778999999998773 22221
Q ss_pred ccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 197 ELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
.+.++++|+.|.+.++. .+ .......++|+.|+++++. ..++. ..+..+++|+.|++++|.+
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--------------GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------TTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--------------HHHhCCCCCCEEEeCCCCc
Confidence 23446888888888887 22 2222356788888886653 11111 1345677788888888876
Q ss_pred c
Q 042962 273 K 273 (377)
Q Consensus 273 ~ 273 (377)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.53 E-value=9.2e-08 Score=78.70 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=84.3
Q ss_pred cCcccEEEecccccc---CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccce--eeccCCCCCCcE
Q 042962 132 AKSMSLLGLDSCKLE---SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLK--HLELPNLGKLKE 206 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~---~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~--~l~i~~l~~L~~ 206 (377)
.++|+.|++++|.+. .|..+..+++|+.|++++|.+.+- ..++.++.|+.|++++|.-.. +-.+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467999999999875 455678999999999999988543 457889999999999884221 112223699999
Q ss_pred EEEcccC--CCc--hhhhcCCcccEEEEeccc-cCCce----eeccCCCccccch
Q 042962 207 FKVYDEY--GLE--QVYIQGMNAHSVHIIGLH-MLPHI----SVVPCKNLKKLKL 252 (377)
Q Consensus 207 L~i~~~~--~~~--~~~~~~p~L~~L~l~g~~-~~~~~----~~~~~~~L~~L~L 252 (377)
|.+++|. ..+ .....+++|++|+++++. ...+. .+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9999998 222 334568999999998774 22221 2455555555544
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.52 E-value=5e-09 Score=102.56 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=145.1
Q ss_pred CceEEEEEEeccCCccchhhHHHHHH-HHHhCCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccC--C
Q 042962 72 SLEKFTFIVQLSDDVKFVSSIYRCLR-YAVETNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLES--P 148 (377)
Q Consensus 72 ~i~~l~l~~~~~~~~~~~~~i~~wi~-~a~~~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--p 148 (377)
.++.+.+... .. ... .|.. ...-.+++.|++....-. +.....+|..+..+++|++|+|++|.+.. +
T Consensus 4 ~l~~L~Ls~~---~l---~~~-~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 4 DIQSLDIQCE---EL---SDA-RWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEEESC---CC---CHH-HHHHHHHHHTTCSEEEEESSCCC---HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred cceehhhhhc---cc---Cch-hHHHHHhhcCCccEEEccCCCCC---HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 3667777433 21 111 2444 333478999999732210 00112456667788999999999987632 1
Q ss_pred CC-CCCCC----CCCeeeccceeeCh---HHHHHHhcCCccccccccccccc----ceeec---cCCCCCCcEEEEcccC
Q 042962 149 RG-NVTLS----CLRELRPRHVCADD---QVIKDLISGCPLIEFISIISCRG----LKHLE---LPNLGKLKEFKVYDEY 213 (377)
Q Consensus 149 ~~-~~~l~----~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~L~~c~~----l~~l~---i~~l~~L~~L~i~~~~ 213 (377)
.. ...++ +|++|+|++|.+++ ..+...+..+++|++|++++|.- ...+. ....++|++|.+.+|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 11 12233 79999999999964 35566688999999999998841 11111 1123689999999997
Q ss_pred CC-------chhhhcCCcccEEEEecccc-CC-ceee-----ccCCCccccchh-------------hhccCCCCCceEe
Q 042962 214 GL-------EQVYIQGMNAHSVHIIGLHM-LP-HISV-----VPCKNLKKLKLC-------------QEIVDCMKLRSIK 266 (377)
Q Consensus 214 ~~-------~~~~~~~p~L~~L~l~g~~~-~~-~~~~-----~~~~~L~~L~L~-------------~~l~~~~~L~~L~ 266 (377)
.. ......+++|++|+++++.. .. ...+ ...++|++|+++ ..+.++++|+.|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 11 12223468999999987641 10 0011 124578888876 2346789999999
Q ss_pred ccCCccceEEc--------cCcccccccccccCCcceEEEcccccccCcc-ccccceEEEEecC
Q 042962 267 ISSFCLKSFLF--------IGYDTLDELKLCTPNLSIFKYHGDLISFSST-ALALSEIALVFNP 321 (377)
Q Consensus 267 i~~~~L~~l~l--------~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l~-~~~L~~l~l~~n~ 321 (377)
+++|.+....+ ..+.+|+.+.++.+++.... ...++..+. .++|++|+++.|.
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG--CGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCTTCCEEECTTCC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH--HHHHHHHHhhCCCcceEECCCCC
Confidence 99988764321 13556777776665542200 011332222 3689999998774
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.48 E-value=1.1e-07 Score=90.48 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCC-CCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee-
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNV-TLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL- 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l- 196 (377)
....+|..+. +.++.|+|++|.+. .++ .+. ++++|++|+|++|.+.+-. ...+.++++|+.|+|+++. +..+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCC
Confidence 3455666543 45788888888763 232 344 7888888888888774221 1235678888888888764 3222
Q ss_pred --ccCCCCCCcEEEEcccC--CC-chhhhcCCcccEEEEeccc-cCCceee----ccCCCccccchh
Q 042962 197 --ELPNLGKLKEFKVYDEY--GL-EQVYIQGMNAHSVHIIGLH-MLPHISV----VPCKNLKKLKLC 253 (377)
Q Consensus 197 --~i~~l~~L~~L~i~~~~--~~-~~~~~~~p~L~~L~l~g~~-~~~~~~~----~~~~~L~~L~L~ 253 (377)
.+.++++|+.|.+.+|. .+ ......+++|+.|+++++. ..++..+ ..+++|+.|+|+
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 23456888888888876 11 2223356788888887664 2233221 345556655554
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.47 E-value=1.7e-07 Score=82.79 Aligned_cols=140 Identities=11% Similarity=0.134 Sum_probs=92.3
Q ss_pred cEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEccc
Q 042962 136 SLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 136 ~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~ 212 (377)
+.++++++.+. +|..+ .++|+.|+|.++.+..-. ...+.++++|+.|+|+++. ++..-.+.++++|+.|.++++
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56788887763 34333 268999999999874321 1236778999999999874 222224556789999999988
Q ss_pred C--CCch-hhhcCCcccEEEEecccc-CCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE---ccCcccccc
Q 042962 213 Y--GLEQ-VYIQGMNAHSVHIIGLHM-LPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL---FIGYDTLDE 285 (377)
Q Consensus 213 ~--~~~~-~~~~~p~L~~L~l~g~~~-~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~ 285 (377)
. .++. ....+++|++|+++++.- ..+. ..+.++++|+.|++++|.++.+. +..+.+|+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV--------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH--------------HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 7 2222 223568888888876531 1110 24567788889999999888765 344556666
Q ss_pred cccccCC
Q 042962 286 LKLCTPN 292 (377)
Q Consensus 286 l~l~~~~ 292 (377)
+.+..+.
T Consensus 157 L~L~~N~ 163 (220)
T 2v9t_B 157 MHLAQNP 163 (220)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 6666554
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.45 E-value=7.3e-08 Score=81.84 Aligned_cols=101 Identities=11% Similarity=-0.041 Sum_probs=61.8
Q ss_pred ccccCcccEEEeccccccCCCCCCCCC-CCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec---cCCCCCC
Q 042962 129 VFYAKSMSLLGLDSCKLESPRGNVTLS-CLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE---LPNLGKL 204 (377)
Q Consensus 129 l~~~~~L~~L~L~~~~~~~p~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~---i~~l~~L 204 (377)
...+.+|+.|++++|.+...+.+..+. +|+.|++++|.+.+- ..+..+++|+.|+++++. +..+. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 345777888888888764334444444 888888888877432 235667777777777663 22221 1335777
Q ss_pred cEEEEcccC--CCch--hhhcCCcccEEEEecc
Q 042962 205 KEFKVYDEY--GLEQ--VYIQGMNAHSVHIIGL 233 (377)
Q Consensus 205 ~~L~i~~~~--~~~~--~~~~~p~L~~L~l~g~ 233 (377)
+.|.+++|. .++. ....+++|+.|.++++
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 777777775 2222 2234567777777655
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.42 E-value=3.2e-07 Score=80.90 Aligned_cols=96 Identities=9% Similarity=0.077 Sum_probs=41.8
Q ss_pred cEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEccc
Q 042962 136 SLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 136 ~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~ 212 (377)
+.++++++.+. +|..+ .+.++.|+|+++.+.+-.....+..+++|+.|+++++. ++..-.+.++++|+.|.++++
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 34555555442 22211 23445566655555322111224455556666655542 111112333455566665555
Q ss_pred C--CC-chhhhcCCcccEEEEecc
Q 042962 213 Y--GL-EQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 213 ~--~~-~~~~~~~p~L~~L~l~g~ 233 (377)
. .+ ......+++|++|+++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCC
Confidence 4 11 111223455555555444
No 119
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2.7e-07 Score=78.26 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=70.6
Q ss_pred CcCCCccccccCcccEEEeccccccCC--CCCCCCCCCCeeecccee-eChHHHHHHhcC---Cccccccccccccccee
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLESP--RGNVTLSCLRELRPRHVC-ADDQVIKDLISG---CPLIEFISIISCRGLKH 195 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~~p--~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~L~~c~~l~~ 195 (377)
...+|......-.|+.|+|++|.+... ..+.++++|++|+|++|. +++..+..+... |++|++|+|++|..++.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 455675433445799999999985321 245789999999999995 799999996653 78999999999975543
Q ss_pred ---eccCCCCCCcEEEEcccCC
Q 042962 196 ---LELPNLGKLKEFKVYDEYG 214 (377)
Q Consensus 196 ---l~i~~l~~L~~L~i~~~~~ 214 (377)
..+..+++|++|.+.+|..
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTT
T ss_pred HHHHHHhcCCCCCEEECCCCCC
Confidence 1334579999999999973
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.32 E-value=6.8e-08 Score=94.41 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=115.6
Q ss_pred CCccccccCcccEEEeccccccCC--CCC-----CCCCCCCeeeccceeeChHH---HHHHhcCCcccccccccccc---
Q 042962 125 LPQLVFYAKSMSLLGLDSCKLESP--RGN-----VTLSCLRELRPRHVCADDQV---IKDLISGCPLIEFISIISCR--- 191 (377)
Q Consensus 125 lp~~l~~~~~L~~L~L~~~~~~~p--~~~-----~~l~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~L~~c~--- 191 (377)
++..+..+++|++|+|++|.+... ..+ ...++|++|++++|.+++.. +...+..+++|++|++++|.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 455566788999999998876321 111 13568999999999885433 44556788999999999873
Q ss_pred -cceee---ccCCCCCCcEEEEcccCC-------CchhhhcCCcccEEEEeccccC------Cceee-ccCCCccccchh
Q 042962 192 -GLKHL---ELPNLGKLKEFKVYDEYG-------LEQVYIQGMNAHSVHIIGLHML------PHISV-VPCKNLKKLKLC 253 (377)
Q Consensus 192 -~l~~l---~i~~l~~L~~L~i~~~~~-------~~~~~~~~p~L~~L~l~g~~~~------~~~~~-~~~~~L~~L~L~ 253 (377)
+...+ ....+++|++|.+.+|.. +......+++|++|+++++... +...+ ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 11111 111358899999998861 1222234788999998776310 00001 123577777776
Q ss_pred -------------hhccCCCCCceEeccCCccceEEc---cC-----cccccccccccCCcceEEEcc-cccccCcc-cc
Q 042962 254 -------------QEIVDCMKLRSIKISSFCLKSFLF---IG-----YDTLDELKLCTPNLSIFKYHG-DLISFSST-AL 310 (377)
Q Consensus 254 -------------~~l~~~~~L~~L~i~~~~L~~l~l---~~-----c~~L~~l~l~~~~L~~~~~~~-~~~p~~l~-~~ 310 (377)
..+.++++|+.|++++|.+..... .. +.+|+.+.++.+++.. .| ..+|..+. .+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD---SSCSSLAATLLANH 398 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH---HHHHHHHHHHHHCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh---hhHHHHHHHHHhCC
Confidence 224567888888888887654211 11 3356666555544321 00 12332222 36
Q ss_pred ccceEEEEecCC
Q 042962 311 ALSEIALVFNPD 322 (377)
Q Consensus 311 ~L~~l~l~~n~~ 322 (377)
+|++++++.|.-
T Consensus 399 ~L~~L~l~~N~i 410 (461)
T 1z7x_W 399 SLRELDLSNNCL 410 (461)
T ss_dssp CCCEEECCSSSC
T ss_pred CccEEECCCCCC
Confidence 788888876643
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.28 E-value=7.5e-07 Score=76.73 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC--CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--ccee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR--GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKH 195 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~ 195 (377)
....+|..+.. +|++|+|++|.+. .++ .+..+++|++|+|++|.+++-.. ..+.+++.|+.|+|+++. ++..
T Consensus 19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECS
T ss_pred CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCCCcCCccCH
Confidence 34556765543 7888888888763 333 26778888888888887743211 235567777777777653 1111
Q ss_pred eccCCCCCCcEEEEcccC
Q 042962 196 LELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 196 l~i~~l~~L~~L~i~~~~ 213 (377)
-.+.++++|+.|.+.++.
T Consensus 96 ~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp SSSTTCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCc
Confidence 123334566666666554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.26 E-value=8.1e-07 Score=76.69 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=34.7
Q ss_pred CcCCCccccccCcccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
...+|..+. ++|+.|+|++|.+. .|..+.++++|+.|+|++|.+++-. ...+.++++|+.|+|+++
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCC
Confidence 344554432 46667777766653 3345556666666666666553211 112344555555555544
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=1.8e-08 Score=87.33 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=73.3
Q ss_pred CcCCCccccccCcccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccC
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELP 199 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~ 199 (377)
...+|..+..+++|++|+|++|.+...+.+.++++|++|++++|.+. .+...+..+|+|+.|++++|. ++. .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS--GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH--HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC--ccc
Confidence 44566677788889999998888743346777888999999888874 223345557888888888773 221 233
Q ss_pred CCCCCcEEEEcccC--CCch--hhhcCCcccEEEEeccc
Q 042962 200 NLGKLKEFKVYDEY--GLEQ--VYIQGMNAHSVHIIGLH 234 (377)
Q Consensus 200 ~l~~L~~L~i~~~~--~~~~--~~~~~p~L~~L~l~g~~ 234 (377)
.+++|+.|.+.+|. .++. ....+++|++|+++++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 35778888888776 2122 22356778888886653
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.25 E-value=5.2e-07 Score=85.68 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=93.3
Q ss_pred ccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhc-CCcccccccccccccceee---ccCCCCCCcEEEE
Q 042962 135 MSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLIS-GCPLIEFISIISCRGLKHL---ELPNLGKLKEFKV 209 (377)
Q Consensus 135 L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~L~~c~~l~~l---~i~~l~~L~~L~i 209 (377)
-+.++++++.+. .|..+ .+.++.|+|++|.+++-.. ..+. ++++|+.|+|+++. +..+ .+..+++|+.|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 367888888774 34332 3569999999998853221 2244 89999999999874 3332 3556799999999
Q ss_pred cccC--CC-chhhhcCCcccEEEEecccc-C-CceeeccCCCccccchh---------hhc---cCCCCCceEeccCCcc
Q 042962 210 YDEY--GL-EQVYIQGMNAHSVHIIGLHM-L-PHISVVPCKNLKKLKLC---------QEI---VDCMKLRSIKISSFCL 272 (377)
Q Consensus 210 ~~~~--~~-~~~~~~~p~L~~L~l~g~~~-~-~~~~~~~~~~L~~L~L~---------~~l---~~~~~L~~L~i~~~~L 272 (377)
+++. .+ ......+++|+.|+++++.- . .+..+.++++|+.|+|+ ..+ .++++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9987 11 22234678999999987742 1 12336677888888876 112 4578888888888877
Q ss_pred ceEE
Q 042962 273 KSFL 276 (377)
Q Consensus 273 ~~l~ 276 (377)
+.+.
T Consensus 176 ~~l~ 179 (361)
T 2xot_A 176 KKLP 179 (361)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7654
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=6.8e-07 Score=83.68 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=96.1
Q ss_pred cCcccEEEeccccc-cCC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccc-----------------ccc
Q 042962 132 AKSMSLLGLDSCKL-ESP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIIS-----------------CRG 192 (377)
Q Consensus 132 ~~~L~~L~L~~~~~-~~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~-----------------c~~ 192 (377)
|++|+.|.|.+ .+ .++ ..|.++++|+.+++.++.+.. .....+.+|..+..+.+.. |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999988 43 333 468899999999999885420 1112355677777666543 211
Q ss_pred ce-eeccC--------------CCCCCcEEEEcccC---CCchhhhcCCcccEEEEecc-ccCCce-eeccCCCccccch
Q 042962 193 LK-HLELP--------------NLGKLKEFKVYDEY---GLEQVYIQGMNAHSVHIIGL-HMLPHI-SVVPCKNLKKLKL 252 (377)
Q Consensus 193 l~-~l~i~--------------~l~~L~~L~i~~~~---~~~~~~~~~p~L~~L~l~g~-~~~~~~-~~~~~~~L~~L~L 252 (377)
+. .+.+. ...+++.+.+.+.. ....+...+++|+++++.++ ...++. .+.+|.+|+.+.+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 11 00000 01333444444332 11112223788888888764 222222 2678888888887
Q ss_pred h--------hhccCCCCCc-eEeccCCccceEE---ccCcccccccccccCCcce
Q 042962 253 C--------QEIVDCMKLR-SIKISSFCLKSFL---FIGYDTLDELKLCTPNLSI 295 (377)
Q Consensus 253 ~--------~~l~~~~~L~-~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~ 295 (377)
. ..+.+|++|+ .+.+.. .++.+. +.+|.+|+.+.+..+++..
T Consensus 258 ~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 258 PHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 6 3467888898 888877 666654 5677888888776666544
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.20 E-value=2.7e-07 Score=78.27 Aligned_cols=125 Identities=13% Similarity=0.022 Sum_probs=79.7
Q ss_pred CCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccccee-eccCCCCCCcEEEEcccC--CCc-hhhhcCCc
Q 042962 149 RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKH-LELPNLGKLKEFKVYDEY--GLE-QVYIQGMN 224 (377)
Q Consensus 149 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~-l~i~~l~~L~~L~i~~~~--~~~-~~~~~~p~ 224 (377)
+.+..+++|+.|++.+|.++. ++.+...+|+|+.|+++++. +.. -.+..+++|+.|.+++|. .++ .+...+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 345677899999999998852 23444445699999999884 222 244557899999999997 222 23356789
Q ss_pred ccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccceEE------ccCcccccccccc
Q 042962 225 AHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKSFL------FIGYDTLDELKLC 289 (377)
Q Consensus 225 L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~l~------l~~c~~L~~l~l~ 289 (377)
|++|+++++. ..++. + ..+.++++|+.|++++|.+..+. +..+++|+.+++.
T Consensus 90 L~~L~L~~N~i~~~~~-------~------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 90 LTELILTNNSLVELGD-------L------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CCEEECCSCCCCCGGG-------G------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCEEECCCCcCCcchh-------h------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 9999997764 22121 1 13455666777777776665431 3344455555443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=1.8e-06 Score=87.17 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
.+|. +..+++|+.|+|++|.+ ..|..+.++++|+.|+|++|.+++ ++ -++++++|+.|+|+++
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC
Confidence 3444 55555666666665554 233445555566666666655532 22 2445555555555544
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.16 E-value=3.3e-06 Score=71.38 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=39.6
Q ss_pred CcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
...+|..+. ++|+.|++++|.+. .++ .+.++++|++|+++++.+.+- ....+.++++|+.|+++++
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence 445565433 57888888887763 232 356778888888888766321 1122445666666666655
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=2.5e-06 Score=86.02 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=31.7
Q ss_pred ccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEccc
Q 042962 135 MSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 135 L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~ 212 (377)
|+.|+|++|.+...+.+.++++|+.|+|++|.++ .++..++++++|+.|+|+++. ++. .+..+++|+.|.+++|
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCC
Confidence 4445555444422223444555555555555442 111223444555555554441 111 2333444444444444
Q ss_pred C
Q 042962 213 Y 213 (377)
Q Consensus 213 ~ 213 (377)
.
T Consensus 519 ~ 519 (567)
T 1dce_A 519 R 519 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=2.1e-06 Score=73.86 Aligned_cols=122 Identities=10% Similarity=0.096 Sum_probs=79.8
Q ss_pred cEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEccc
Q 042962 136 SLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYDE 212 (377)
Q Consensus 136 ~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~~ 212 (377)
+.++++++.+. +|..+ .++|+.|++.++.+.+-.....+..+++|+.|+++++. ++..-.+.++++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 78999998874 34333 34899999999988432222246788999999999873 332234555788999999888
Q ss_pred C--C-CchhhhcCCcccEEEEeccccC-CceeeccCCCccccchhhhccCCCCCceEeccCCccc
Q 042962 213 Y--G-LEQVYIQGMNAHSVHIIGLHML-PHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 213 ~--~-~~~~~~~~p~L~~L~l~g~~~~-~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~ 273 (377)
. . ........++|++|+++++.-. ... ..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECT--------------TSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCH--------------HHhhcCCCCCEEEeCCCCcc
Confidence 7 1 1122234678888888665311 000 13455677888888888775
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.03 E-value=5.1e-06 Score=71.58 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccC-C-CCCCCCCCCCeeeccceeeChHHHHHHhcCC
Q 042962 102 TNVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLES-P-RGNVTLSCLRELRPRHVCADDQVIKDLISGC 179 (377)
Q Consensus 102 ~~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~c 179 (377)
.++++|.+.. .....+|..+..+++|+.|+|++|.+.. + ..+.++++|++|+|++|.+..-.. ..+.++
T Consensus 31 ~~l~~L~L~~--------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYLDG--------NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGL 101 (193)
T ss_dssp TTCCEEECCS--------SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTC
T ss_pred CCCCEEECCC--------CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCC
Confidence 4677777752 2345788888899999999999998743 3 358899999999999998843211 235667
Q ss_pred cccccccccccccceee---ccCCCCCCcEEEEcccC
Q 042962 180 PLIEFISIISCRGLKHL---ELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 180 p~Le~L~L~~c~~l~~l---~i~~l~~L~~L~i~~~~ 213 (377)
++|+.|+|+++. +..+ .+..+++|+.|.+.++.
T Consensus 102 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 777777777653 2111 12234556666665544
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.03 E-value=8.7e-06 Score=76.77 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=114.5
Q ss_pred CCcCCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec-
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE- 197 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~- 197 (377)
+...+|..+ .+++++|+|++|.+. +|+ .+.++++|++|+|++|.+.+......+.++++|.++.+.++..+..+.
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 456788766 468999999999873 444 578999999999999976332223346788888877776666565553
Q ss_pred --cCCCCCCcEEEEcccC--CCc-hhhhcCCcccEEEEeccc--cCCce-eeccC-CCccccchh--------hhccCCC
Q 042962 198 --LPNLGKLKEFKVYDEY--GLE-QVYIQGMNAHSVHIIGLH--MLPHI-SVVPC-KNLKKLKLC--------QEIVDCM 260 (377)
Q Consensus 198 --i~~l~~L~~L~i~~~~--~~~-~~~~~~p~L~~L~l~g~~--~~~~~-~~~~~-~~L~~L~L~--------~~l~~~~ 260 (377)
+..+++|+.|.+.++. ... .......++..+.+.+.. ..++. .+..+ ..++.|+++ ......+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 4457899999999987 222 223455677788886543 11111 12233 346666665 1223446
Q ss_pred CCceEecc-CCccceEE---ccCcccccccccccCCcceE
Q 042962 261 KLRSIKIS-SFCLKSFL---FIGYDTLDELKLCTPNLSIF 296 (377)
Q Consensus 261 ~L~~L~i~-~~~L~~l~---l~~c~~L~~l~l~~~~L~~~ 296 (377)
+++.+.+. +|.++.+. +.++.+|+.++++.+++..+
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 77778776 46677664 35566788888887777654
No 133
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=3.5e-07 Score=87.44 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=26.9
Q ss_pred CcccEEEeccccccCC--C-CCCCCCCCCeeeccceeeChHHHHHH---h-cCCccccccccccc
Q 042962 133 KSMSLLGLDSCKLESP--R-GNVTLSCLRELRPRHVCADDQVIKDL---I-SGCPLIEFISIISC 190 (377)
Q Consensus 133 ~~L~~L~L~~~~~~~p--~-~~~~l~~L~~L~L~~~~~~~~~l~~l---~-~~cp~Le~L~L~~c 190 (377)
++|++|+|++|.+... . -...+++|++|+|++|.+++.....+ + ..++.|++|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 4555666655544210 0 11123455566666655544333322 1 23455555555555
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=4.4e-06 Score=78.06 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=47.1
Q ss_pred cCCCccccchh---------hhccCCCCCceEeccCCccceEE---ccCccccc-ccccccCCcceEEEcccccc-cCc-
Q 042962 243 PCKNLKKLKLC---------QEIVDCMKLRSIKISSFCLKSFL---FIGYDTLD-ELKLCTPNLSIFKYHGDLIS-FSS- 307 (377)
Q Consensus 243 ~~~~L~~L~L~---------~~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~-~l~l~~~~L~~~~~~~~~~p-~~l- 307 (377)
.|++|+.+++. ..+.+|++|+.+.+..+ ++.+. +.+|.+|+ .+.+.. ++.. ++ ..+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-------I~~~aF~ 294 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-------IEFGAFM 294 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-------ECTTTTT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-------Echhhhh
Confidence 48899998887 34688999999999886 77664 56777787 776654 4332 22 122
Q ss_pred cccccceEEEEec
Q 042962 308 TALALSEIALVFN 320 (377)
Q Consensus 308 ~~~~L~~l~l~~n 320 (377)
..++|+++++..|
T Consensus 295 ~c~~L~~l~l~~n 307 (329)
T 3sb4_A 295 GCDNLRYVLATGD 307 (329)
T ss_dssp TCTTEEEEEECSS
T ss_pred CCccCCEEEeCCC
Confidence 2367888887543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=2.1e-05 Score=75.75 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=16.1
Q ss_pred ccCCCCCceEeccCCccceEE---ccCccccccccc
Q 042962 256 IVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKL 288 (377)
Q Consensus 256 l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l 288 (377)
+.+|++|+.+.+. +.++.+. +.+|.+|+.+.+
T Consensus 296 F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 296 LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 3556666666655 2344432 344555555544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.92 E-value=2.2e-05 Score=75.64 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=86.5
Q ss_pred ccCcccEEEeccccc-cCCCCCCCCCCCCeeeccce--eeChHHHHHHhcCCcccccccccccccceee---ccCCCCCC
Q 042962 131 YAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHV--CADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPNLGKL 204 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~l~~L 204 (377)
.|++|+.++|.++.+ .++...-...+|+.+.|... .+.. ..+.+|++|+.+.+... +..+ ...+ .+|
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCC
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCCC--ccCcccccccc-CCc
Confidence 455555555554433 12221112345555555432 1111 23566777777777542 2222 2233 678
Q ss_pred cEEEEcccC-CC-chhhhcCCcccEEEEeccccC------Cc-eeeccCCCccccchh--------hhccCCCCCceEec
Q 042962 205 KEFKVYDEY-GL-EQVYIQGMNAHSVHIIGLHML------PH-ISVVPCKNLKKLKLC--------QEIVDCMKLRSIKI 267 (377)
Q Consensus 205 ~~L~i~~~~-~~-~~~~~~~p~L~~L~l~g~~~~------~~-~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i 267 (377)
+.+.+.+.- .+ ......+++|+.+.+.++... ++ ..+.+|.+|+.+.+. ..+.+|++|+.+.+
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE
Confidence 888875433 11 222346789999998765421 11 227789999988886 44678899999998
Q ss_pred cCCccceEE---ccCcccccccccccCCc
Q 042962 268 SSFCLKSFL---FIGYDTLDELKLCTPNL 293 (377)
Q Consensus 268 ~~~~L~~l~---l~~c~~L~~l~l~~~~L 293 (377)
.. .++.+. +.+| +|+.+.+..+++
T Consensus 331 p~-~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 331 PA-NVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CT-TCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred Cc-cccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 54 466553 4566 677776665543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.90 E-value=3.8e-07 Score=78.86 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred CCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec--cCCCCCCcEEEEcccC--CCchhhhcCCcc
Q 042962 150 GNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE--LPNLGKLKEFKVYDEY--GLEQVYIQGMNA 225 (377)
Q Consensus 150 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~--i~~l~~L~~L~i~~~~--~~~~~~~~~p~L 225 (377)
.+..+++|++|++++|.+.+ +. .+.++++|+.|++++|. +..+. +..+++|+.|.+.+|. .++. ...+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~-~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHH-HHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCc-cccCCCC
Confidence 45677888888888887743 22 35567777777777663 11111 1113567777776665 2221 1234566
Q ss_pred cEEEEecccc-CCceeeccCCCccccchhhhccCCCCCceEeccCCccce
Q 042962 226 HSVHIIGLHM-LPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 226 ~~L~l~g~~~-~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~~ 274 (377)
+.|+++++.- ..+. + ..+.++++|+.|++++|.+..
T Consensus 118 ~~L~l~~N~i~~~~~-------~------~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 118 RVLYMSNNKITNWGE-------I------DKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEESEEECCCHHH-------H------HHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECCCCcCCchhH-------H------HHHhcCCCCCEEEecCCcccc
Confidence 6666654421 1000 0 134566777777777776643
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.87 E-value=1.4e-05 Score=67.25 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=50.1
Q ss_pred CCcCCCccccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceee
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHL 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l 196 (377)
....+|..+. ++|+.|+|++|.+. . |..+.++++|++|+|++|.+.+ .....+.++++|+.|+|+++. ++..-
T Consensus 20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHH
Confidence 3455666553 67888888887763 2 3356777888888888887632 112234556666666666552 11111
Q ss_pred ccCCCCCCcEEEEcccC
Q 042962 197 ELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 197 ~i~~l~~L~~L~i~~~~ 213 (377)
.+..+++|+.|.+.++.
T Consensus 97 ~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEEeCCCC
Confidence 12234555555555543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.84 E-value=1.9e-05 Score=66.76 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=39.4
Q ss_pred CcCCCccccccCcccEEEecccccc-C-CCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccc
Q 042962 122 YYNLPQLVFYAKSMSLLGLDSCKLE-S-PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISC 190 (377)
Q Consensus 122 ~~~lp~~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c 190 (377)
...+|..+. ++|+.|+|++|.+. . |..+.++++|++|+|++|.+.+ .....+.++++|+.|+|+++
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC
Confidence 445666543 67777788777763 2 2356677777777777776632 11122345566666666554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.80 E-value=1.1e-05 Score=83.83 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=66.8
Q ss_pred CCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccccee--eccCCCCCCcEEEEcccC--CCchhhhcCCc
Q 042962 149 RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKH--LELPNLGKLKEFKVYDEY--GLEQVYIQGMN 224 (377)
Q Consensus 149 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~--l~i~~l~~L~~L~i~~~~--~~~~~~~~~p~ 224 (377)
..+..+++|+.|+|++|.+. .+..-+.+++.|+.|+|+++. +.. -.+..+++|+.|++++|. .++.....+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 45778899999999999874 122224578999999999874 222 234457899999999887 33333456788
Q ss_pred ccEEEEeccc-cCCceeeccCCCccccchh
Q 042962 225 AHSVHIIGLH-MLPHISVVPCKNLKKLKLC 253 (377)
Q Consensus 225 L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~ 253 (377)
|++|.++++. ..+|..++.+++|+.|+|+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 9999987764 3444445555555555554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.79 E-value=6e-06 Score=85.74 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred CccccccCcccEEEeccccc-cCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccccee--eccCCCC
Q 042962 126 PQLVFYAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKH--LELPNLG 202 (377)
Q Consensus 126 p~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~--l~i~~l~ 202 (377)
|..+..++.|+.|+|++|.+ .+|..+.++++|++|+|++|.++ .+..-++++++|+.|+|+++. +.. -.+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 34445566677777776665 33444556667777777776664 122224566677777776653 111 1233456
Q ss_pred CCcEEEEcccC--CCchhhhcCCcccEEEEecc
Q 042962 203 KLKEFKVYDEY--GLEQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 203 ~L~~L~i~~~~--~~~~~~~~~p~L~~L~l~g~ 233 (377)
+|+.|.+.+|. .++.....+++|+.|+++++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 67777776665 22222334566777766555
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.79 E-value=9.8e-06 Score=76.99 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHhcCCcccccccccccccceeeccCCCCCCcEEEEcccCC----Cchhh-hcCCcccEEEEec--cc--cCC-----
Q 042962 172 IKDLISGCPLIEFISIISCRGLKHLELPNLGKLKEFKVYDEYG----LEQVY-IQGMNAHSVHIIG--LH--MLP----- 237 (377)
Q Consensus 172 l~~l~~~cp~Le~L~L~~c~~l~~l~i~~l~~L~~L~i~~~~~----~~~~~-~~~p~L~~L~l~g--~~--~~~----- 237 (377)
+..++..+|+|++|.|.++.++....+. +++|++|.+..|.. ...+. ..+|+|++|.++. +. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4466788999999999887443322233 58999999987761 11222 2579999999852 11 110
Q ss_pred --ceeeccCCCccccchh---------hhc---cCCCCCceEeccCCccce
Q 042962 238 --HISVVPCKNLKKLKLC---------QEI---VDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 238 --~~~~~~~~~L~~L~L~---------~~l---~~~~~L~~L~i~~~~L~~ 274 (377)
......+++|++|.|. ..+ ..+++|+.|+++.|.+..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 0111245677777664 111 235667777776666543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.76 E-value=2.5e-05 Score=65.88 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=79.8
Q ss_pred cccEEEeccccccCCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccc--cceeeccCCCCCCcEEEEcc
Q 042962 134 SMSLLGLDSCKLESPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCR--GLKHLELPNLGKLKEFKVYD 211 (377)
Q Consensus 134 ~L~~L~L~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~--~l~~l~i~~l~~L~~L~i~~ 211 (377)
+.+.++++++.+...+ ..-.++|+.|++.++.+.+ .....+.++++|++|+++++. ++..-.+..+++|+.|.+.+
T Consensus 8 ~~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4577888888764322 2234799999999998842 122346788999999999873 22211234568899999988
Q ss_pred cC--CCch-hhhcCCcccEEEEeccc-cCCceeeccCCCccccchhhhccCCCCCceEeccCCccc
Q 042962 212 EY--GLEQ-VYIQGMNAHSVHIIGLH-MLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCLK 273 (377)
Q Consensus 212 ~~--~~~~-~~~~~p~L~~L~l~g~~-~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L~ 273 (377)
+. .+.. .....++|++|+++++. ..++. ..+.++++|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD--------------GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------TTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH--------------HHhcCCcccCEEEecCCCee
Confidence 87 2222 22356788888886653 11111 12356778888888888765
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=2.1e-05 Score=74.73 Aligned_cols=204 Identities=13% Similarity=0.039 Sum_probs=115.0
Q ss_pred hHHHHHHHHhhcCCCcCceEEEEEEeccCC-ccchhhHHHHHHHHH-hCCceEEEEEeeCCC-CCCC-CCCcCCCccccc
Q 042962 56 LKCLVKTLLNHYGDDFSLEKFTFIVQLSDD-VKFVSSIYRCLRYAV-ETNVKELKLGFCCPH-SNYP-DSYYNLPQLVFY 131 (377)
Q Consensus 56 ~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~-~~~~~~i~~wi~~a~-~~~v~~L~L~~~~~~-~~~~-~~~~~lp~~l~~ 131 (377)
.+.+.++|...... .++.+.+.... .+ ......+..++..+. -.++++|.+...... .... .....++..+..
T Consensus 94 ~~~~~~fl~~~~~~--~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~ 170 (362)
T 2ra8_A 94 VNLMDKILKDKKLP--SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA 170 (362)
T ss_dssp CCHHHHHHHCTTGG--GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT
T ss_pred HHHHHHHhcCCCch--hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc
Confidence 44556666443332 47787775321 11 011124444444332 368999988522110 0000 001135555567
Q ss_pred cCcccEEEecccc-ccCCCCCCCCCCCCeeeccceeeChHHHHHHh-cCCcccccccccccc-------cce---e-ecc
Q 042962 132 AKSMSLLGLDSCK-LESPRGNVTLSCLRELRPRHVCADDQVIKDLI-SGCPLIEFISIISCR-------GLK---H-LEL 198 (377)
Q Consensus 132 ~~~L~~L~L~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~-~~cp~Le~L~L~~c~-------~l~---~-l~i 198 (377)
+++|+.|.|++|. +..++ ...++|++|.|..+.+++..+..+. +.+|+|+.|.|+.+. ++. . +..
T Consensus 171 ~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 8999999999874 44433 3489999999999999888887765 479999999986321 111 1 122
Q ss_pred CCCCCCcEEEEcccCCC----chhh--hcCCcccEEEEeccccCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 199 PNLGKLKEFKVYDEYGL----EQVY--IQGMNAHSVHIIGLHMLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 199 ~~l~~L~~L~i~~~~~~----~~~~--~~~p~L~~L~l~g~~~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
..+|+|+.|.+.+|... ..+. ..+|+|++|+++.+... .. +...+ ...+.++++|+.|+++.|.+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~-d~---G~~~L-----~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-DE---GARLL-----LDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB-HH---HHHHH-----HTTHHHHTTCSEEECCSBBC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC-hH---HHHHH-----HhhcccCCcceEEECCCCcC
Confidence 24689999999888711 1111 13578888888554210 00 00000 01224567788888877755
Q ss_pred c
Q 042962 273 K 273 (377)
Q Consensus 273 ~ 273 (377)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.56 E-value=6.3e-05 Score=63.19 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=46.9
Q ss_pred cccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec---cCCCCCCcEEEE
Q 042962 134 SMSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE---LPNLGKLKEFKV 209 (377)
Q Consensus 134 ~L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~---i~~l~~L~~L~i 209 (377)
+.+.++++++.+. +|..+ .++|+.|+|++|.+.+-. ...+.++++|+.|+|+++. +..+. +.++++|+.|.+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 4688999998874 34333 488999999999884321 1235567777777777653 22211 223455666666
Q ss_pred cccC
Q 042962 210 YDEY 213 (377)
Q Consensus 210 ~~~~ 213 (377)
.++.
T Consensus 86 ~~N~ 89 (170)
T 3g39_A 86 NDNQ 89 (170)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5554
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=1.6e-05 Score=67.37 Aligned_cols=84 Identities=13% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec---cCC----CCCCcEEEEcccCC-----C
Q 042962 148 PRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE---LPN----LGKLKEFKVYDEYG-----L 215 (377)
Q Consensus 148 p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~---i~~----l~~L~~L~i~~~~~-----~ 215 (377)
|.....-..|+.|+++++.+++..+.. +++|++|+.|+|++|..++.-. ++. +++|++|++++|.. +
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 433333357999999999998888887 4899999999999997554322 222 24799999999972 2
Q ss_pred chhhhcCCcccEEEEecc
Q 042962 216 EQVYIQGMNAHSVHIIGL 233 (377)
Q Consensus 216 ~~~~~~~p~L~~L~l~g~ 233 (377)
..+ ..+++|++|++++.
T Consensus 133 ~~L-~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IAL-HHFRNLKYLFLSDL 149 (176)
T ss_dssp HHG-GGCTTCCEEEEESC
T ss_pred HHH-hcCCCCCEEECCCC
Confidence 233 25788888888554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.49 E-value=9e-05 Score=62.56 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=46.2
Q ss_pred ccEEEecccccc-CCCCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceeec---cCCCCCCcEEEEc
Q 042962 135 MSLLGLDSCKLE-SPRGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHLE---LPNLGKLKEFKVY 210 (377)
Q Consensus 135 L~~L~L~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l~---i~~l~~L~~L~i~ 210 (377)
-+.++++++.+. +|..+ .++|++|+|++|.+.+-. ...+.++++|+.|+|+++. +..+. +..+++|+.|++.
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 478899988874 44433 388999999999884321 2235667777777777662 22221 2234556666665
Q ss_pred ccC
Q 042962 211 DEY 213 (377)
Q Consensus 211 ~~~ 213 (377)
++.
T Consensus 90 ~N~ 92 (174)
T 2r9u_A 90 DNH 92 (174)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=2e-05 Score=75.11 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=71.0
Q ss_pred cCcccEEEeccccccCC------CCC-CCCCCCCeeeccceeeChHHHHHHhcCCccccccccccccc----ceeec--c
Q 042962 132 AKSMSLLGLDSCKLESP------RGN-VTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRG----LKHLE--L 198 (377)
Q Consensus 132 ~~~L~~L~L~~~~~~~p------~~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~----l~~l~--i 198 (377)
.+.|+.|+|++|.+... ..+ ...++|+.|+|++|.+++..+..+...+++|+.|+|++|.- ...+. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999886321 011 13368999999999998888888777788999999998831 11111 1
Q ss_pred -CCCCCCcEEEEcccCC----Cchh---hhcCCcccEEEEeccc
Q 042962 199 -PNLGKLKEFKVYDEYG----LEQV---YIQGMNAHSVHIIGLH 234 (377)
Q Consensus 199 -~~l~~L~~L~i~~~~~----~~~~---~~~~p~L~~L~l~g~~ 234 (377)
...++|+.|++.+|.. ...+ ....++|++|+++++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 2247899999999871 1111 1346889999987763
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.32 E-value=0.00013 Score=68.22 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCcCCCccccccCcccEEEecc-cccc-CC-CCCCCCCCCCeeeccceeeChHHHHHHhcCCcccccccccccccceee-
Q 042962 121 SYYNLPQLVFYAKSMSLLGLDS-CKLE-SP-RGNVTLSCLRELRPRHVCADDQVIKDLISGCPLIEFISIISCRGLKHL- 196 (377)
Q Consensus 121 ~~~~lp~~l~~~~~L~~L~L~~-~~~~-~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l- 196 (377)
....+|. +..+++|+.|+|++ |.+. .+ ..+.++++|+.|+|++|.+.+- ....+.++++|+.|+|+++. +..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 3566888 88899999999996 8773 33 3588999999999999988542 22346789999999999773 2222
Q ss_pred --ccCCCCCCcEEEEcccC
Q 042962 197 --ELPNLGKLKEFKVYDEY 213 (377)
Q Consensus 197 --~i~~l~~L~~L~i~~~~ 213 (377)
.+.. .+|+.|.+.++.
T Consensus 97 ~~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp STTTCS-CCCCEEECCSSC
T ss_pred HHHccc-CCceEEEeeCCC
Confidence 2222 348899988776
No 150
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.23 E-value=0.00014 Score=48.42 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCCCCCcHHHHHHHhhcCChhHH---------hhcC
Q 042962 12 GDMISALLAPILHHILSFLSIEQV---------WHSH 39 (377)
Q Consensus 12 ~DriS~LPD~lL~~ILs~Lp~~da---------Wr~l 39 (377)
.+.++.||+|++.+||++||.+|. |+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~ 42 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999987 8776
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.91 E-value=0.00025 Score=60.46 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=18.2
Q ss_pred CCCCCCeeeccceeeChHHHH---HHhcCCccccccccccc
Q 042962 153 TLSCLRELRPRHVCADDQVIK---DLISGCPLIEFISIISC 190 (377)
Q Consensus 153 ~l~~L~~L~L~~~~~~~~~l~---~l~~~cp~Le~L~L~~c 190 (377)
..++|++|+|++|.+++.... ..+..++.|++|+|++|
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 345555555555555433322 22334455555555544
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.90 E-value=0.00055 Score=63.99 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=67.0
Q ss_pred EEEeccc-cc-cCCCCCCCCCCCCeeeccc-eeeChHHHHHHhcCCcccccccccccccceee---ccCCCCCCcEEEEc
Q 042962 137 LLGLDSC-KL-ESPRGNVTLSCLRELRPRH-VCADDQVIKDLISGCPLIEFISIISCRGLKHL---ELPNLGKLKEFKVY 210 (377)
Q Consensus 137 ~L~L~~~-~~-~~p~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~c~~l~~l---~i~~l~~L~~L~i~ 210 (377)
.++++++ .+ .+|. +..+++|+.|+|++ |.+.+- ....+.++++|+.|+|+++. +..+ .+.++++|+.|+++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence 4577776 66 4566 88899999999996 877432 12347789999999999874 3333 34557999999999
Q ss_pred ccC--CCchhhhcCCcccEEEEeccc
Q 042962 211 DEY--GLEQVYIQGMNAHSVHIIGLH 234 (377)
Q Consensus 211 ~~~--~~~~~~~~~p~L~~L~l~g~~ 234 (377)
++. .++.-.+....|+.|.+.++.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 997 333223333449999987663
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.60 E-value=0.0068 Score=57.67 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=80.0
Q ss_pred ccCcccEEEeccccccCC-CCCCCCCCCCeeeccce--eeChHHHHHHhcCCcccccccccccc-cceeeccCCCCCCcE
Q 042962 131 YAKSMSLLGLDSCKLESP-RGNVTLSCLRELRPRHV--CADDQVIKDLISGCPLIEFISIISCR-GLKHLELPNLGKLKE 206 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~~~p-~~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~L~~c~-~l~~l~i~~l~~L~~ 206 (377)
.|++|+.+.+.......+ ..+.++++|+.+.+..+ .+.+ ..+.+|+.|+.+.+.... ........ ..+|+.
T Consensus 160 ~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~----~~F~~~~~L~~i~~~~~~~~i~~~~~~-~~~l~~ 234 (394)
T 4fs7_A 160 TCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRD----YCFAECILLENMEFPNSLYYLGDFALS-KTGVKN 234 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCTTCCBCCCCTTCCEECTTTTT-TCCCCE
T ss_pred ccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCc----hhhccccccceeecCCCceEeehhhcc-cCCCce
Confidence 456666666654332222 24555666666666443 1111 224556666666554321 11111111 245666
Q ss_pred EEEcccC-CC-chhhhcCCcccEEEEeccccCC----------------------ceeeccCCCccccchh--------h
Q 042962 207 FKVYDEY-GL-EQVYIQGMNAHSVHIIGLHMLP----------------------HISVVPCKNLKKLKLC--------Q 254 (377)
Q Consensus 207 L~i~~~~-~~-~~~~~~~p~L~~L~l~g~~~~~----------------------~~~~~~~~~L~~L~L~--------~ 254 (377)
+.+.... .+ ......+..|+.+.+......+ ...+..|.+|+.+.+. .
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~ 314 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEE 314 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTT
T ss_pred EEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceechh
Confidence 6554332 01 1112234555555553221000 0013455666655553 2
Q ss_pred hccCCCCCceEeccCCccceEE---ccCcccccccccccCCcceEEEcccccccCc-cccccceEEEEec
Q 042962 255 EIVDCMKLRSIKISSFCLKSFL---FIGYDTLDELKLCTPNLSIFKYHGDLISFSS-TALALSEIALVFN 320 (377)
Q Consensus 255 ~l~~~~~L~~L~i~~~~L~~l~---l~~c~~L~~l~l~~~~L~~~~~~~~~~p~~l-~~~~L~~l~l~~n 320 (377)
.+.+|.+|+.+.+.. .++.+. +.+|.+|+.+.+.. ++... |. ..+ +..+|+++++..+
T Consensus 315 aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~-~l~~I---~~---~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL-SLRKI---GA---NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCT-TCCEE---CT---TTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECc-cccEe---hH---HHhhCCCCCCEEEECCC
Confidence 346677777776643 244442 45666676665532 23221 11 112 2357788877644
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.50 E-value=0.0025 Score=60.74 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=47.7
Q ss_pred hcCCcccEEEEeccccCCc-eeeccCCCccccchh--------hhccCCCCCceEeccCCccceE---EccCcccccccc
Q 042962 220 IQGMNAHSVHIIGLHMLPH-ISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKSF---LFIGYDTLDELK 287 (377)
Q Consensus 220 ~~~p~L~~L~l~g~~~~~~-~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~l---~l~~c~~L~~l~ 287 (377)
..+.+|+.+.+......+. ..+.+|.+|+.+.+. ..+.+|.+|+.+.+..+ ++.+ .+.+|.+|+++.
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 3567888888754432221 126789999988875 34678999999988654 6665 366788888776
Q ss_pred cc
Q 042962 288 LC 289 (377)
Q Consensus 288 l~ 289 (377)
+.
T Consensus 373 lp 374 (394)
T 4fs7_A 373 LP 374 (394)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.31 E-value=0.002 Score=54.68 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=62.2
Q ss_pred CCCCCCCeeeccce-eeChHHHHH---HhcCCcccccccccccc----cceee--ccCCCCCCcEEEEcccC-C------
Q 042962 152 VTLSCLRELRPRHV-CADDQVIKD---LISGCPLIEFISIISCR----GLKHL--ELPNLGKLKEFKVYDEY-G------ 214 (377)
Q Consensus 152 ~~l~~L~~L~L~~~-~~~~~~l~~---l~~~cp~Le~L~L~~c~----~l~~l--~i~~l~~L~~L~i~~~~-~------ 214 (377)
...++|++|+|++| .+++..... .+..++.|++|+|++|. +...+ .+...++|++|++++|. .
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45688999999998 887655443 45678888888888773 11111 11113678888888776 1
Q ss_pred CchhhhcCCcccEEEE--eccccCCceeeccCCCccccchhhhccCCCCCceEeccCCcc
Q 042962 215 LEQVYIQGMNAHSVHI--IGLHMLPHISVVPCKNLKKLKLCQEIVDCMKLRSIKISSFCL 272 (377)
Q Consensus 215 ~~~~~~~~p~L~~L~l--~g~~~~~~~~~~~~~~L~~L~L~~~l~~~~~L~~L~i~~~~L 272 (377)
+.......++|++|++ +++... . .++.. +...+...+.|+.|+++.|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~-~---~g~~~-----l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG-N---NVEME-----IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC-H---HHHHH-----HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCC-H---HHHHH-----HHHHHHhCCCcCEEeccCCCC
Confidence 1111123456777776 333210 0 00000 002344556677777766654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.20 E-value=0.011 Score=56.33 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCCCCcEEEEcccC-CC-chhhhcCCcccEEEEeccccCCc-eeeccCCCccccchh--------hhccCCCCCceEecc
Q 042962 200 NLGKLKEFKVYDEY-GL-EQVYIQGMNAHSVHIIGLHMLPH-ISVVPCKNLKKLKLC--------QEIVDCMKLRSIKIS 268 (377)
Q Consensus 200 ~l~~L~~L~i~~~~-~~-~~~~~~~p~L~~L~l~g~~~~~~-~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~ 268 (377)
+|..|+.+.+.... .+ ......+++|+.+.+......++ ..+.+|.+|+.+.+. ..+.+|.+|+.+.+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEC
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEEC
Confidence 35667777665433 11 11223467777777743322111 125677788777764 345778888888874
Q ss_pred CCccceE---EccCccccccccccc
Q 042962 269 SFCLKSF---LFIGYDTLDELKLCT 290 (377)
Q Consensus 269 ~~~L~~l---~l~~c~~L~~l~l~~ 290 (377)
. .++.+ .+.+|.+|+.+.+..
T Consensus 343 ~-sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 343 S-SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp T-TCCBCCGGGGTTCTTCCEEEESS
T ss_pred c-ccCEEhHhHhhCCCCCCEEEECC
Confidence 3 24443 356677777665543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.13 E-value=0.0079 Score=54.27 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=18.5
Q ss_pred cccccCcccEEEeccccccCCCCCCCCC--CCCeeeccceee
Q 042962 128 LVFYAKSMSLLGLDSCKLESPRGNVTLS--CLRELRPRHVCA 167 (377)
Q Consensus 128 ~l~~~~~L~~L~L~~~~~~~p~~~~~l~--~L~~L~L~~~~~ 167 (377)
.+..+++|+.|+|++|.+.....+..++ +|+.|+|.+|.+
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred HHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 3344555555555555543222222222 555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.94 E-value=0.0064 Score=54.87 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=38.1
Q ss_pred CCCCCCeeeccceeeCh-HHHHHHhcCCcccccccccccc--cceee-ccCCCCCCcEEEEcccCCC----------chh
Q 042962 153 TLSCLRELRPRHVCADD-QVIKDLISGCPLIEFISIISCR--GLKHL-ELPNLGKLKEFKVYDEYGL----------EQV 218 (377)
Q Consensus 153 ~l~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~L~~c~--~l~~l-~i~~l~~L~~L~i~~~~~~----------~~~ 218 (377)
++++|++|+|++|.+.+ ..+...+..+|+|+.|+|+++. ++..+ .+..+ +|+.|.+.++... ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 45566666666665532 1222334456666666666542 22111 11122 6777777776511 112
Q ss_pred hhcCCcccEEE
Q 042962 219 YIQGMNAHSVH 229 (377)
Q Consensus 219 ~~~~p~L~~L~ 229 (377)
....|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34567777765
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.92 E-value=0.027 Score=53.44 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=34.6
Q ss_pred cCCcccEEEEeccccCCc-eeeccCCCccccchh--------hhccCCCCCceEeccCCccceEEccCccccccccccc
Q 042962 221 QGMNAHSVHIIGLHMLPH-ISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKSFLFIGYDTLDELKLCT 290 (377)
Q Consensus 221 ~~p~L~~L~l~g~~~~~~-~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~l~l~~c~~L~~l~l~~ 290 (377)
.|.+|+.+.+......+. ..+.+|.+|+.+.+. ..+.+|++|+.+.+.++....-.+..|.+|+.+.+..
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 345566665533221111 114566666666553 3467788888888876644333345566666665543
No 160
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.0073 Score=54.85 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHhhcCChhHH
Q 042962 15 ISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 15 iS~LPD~lL~~ILs~Lp~~da 35 (377)
|++||+||+++|||||+.+|.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL 25 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDL 25 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHH
Confidence 678999999999999999998
No 161
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=94.26 E-value=0.017 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCCCCCcHHHHHHHhhcCChhHH
Q 042962 13 DMISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 13 DriS~LPD~lL~~ILs~Lp~~da 35 (377)
..+..||||||.+||++||.++.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L 71 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATEL 71 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHH
Confidence 46889999999999999999887
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.96 E-value=0.036 Score=52.12 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=72.7
Q ss_pred ccCcccEEEeccccc-cCCCCCCCCCCCCeeeccce--eeChHHHHHHhcCCccccccccccc-ccceeeccCCCCCCcE
Q 042962 131 YAKSMSLLGLDSCKL-ESPRGNVTLSCLRELRPRHV--CADDQVIKDLISGCPLIEFISIISC-RGLKHLELPNLGKLKE 206 (377)
Q Consensus 131 ~~~~L~~L~L~~~~~-~~p~~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~L~~c-~~l~~l~i~~l~~L~~ 206 (377)
.+.+++...+..... .....+..+.+|+.+.+... .+.. ..+.+|..|+.+.+... ..+..-....+.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccceeEEcc----ccccCCccceEEEcCCCccEeCccccceeehhcc
Confidence 445555555543221 11224455667777776543 1111 22456777777776532 1122222333566777
Q ss_pred EEEcccC-CC-chhhhcCCcccEEEEecc-ccCCc-eeeccCCCccccchh--------hhccCCCCCceEeccCCccce
Q 042962 207 FKVYDEY-GL-EQVYIQGMNAHSVHIIGL-HMLPH-ISVVPCKNLKKLKLC--------QEIVDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 207 L~i~~~~-~~-~~~~~~~p~L~~L~l~g~-~~~~~-~~~~~~~~L~~L~L~--------~~l~~~~~L~~L~i~~~~L~~ 274 (377)
+.+...- .+ ......+++|+.+.+.+. ...+. ..+.+|.+|+.+.|. ..+.+|.+|+.+.+.. .++.
T Consensus 268 i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~-~v~~ 346 (379)
T 4h09_A 268 LNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK-SITL 346 (379)
T ss_dssp EEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT-TCCE
T ss_pred ccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC-ccCE
Confidence 7765432 11 112235677887777543 11111 125677777777764 3457788888877743 3555
Q ss_pred E
Q 042962 275 F 275 (377)
Q Consensus 275 l 275 (377)
+
T Consensus 347 I 347 (379)
T 4h09_A 347 I 347 (379)
T ss_dssp E
T ss_pred E
Confidence 4
No 163
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.63 E-value=0.037 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCCCCCCCcHHHHHHHhhcCChhHH
Q 042962 10 ANGDMISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 10 ~~~DriS~LPD~lL~~ILs~Lp~~da 35 (377)
-..|.|+.||+||+.+||||||.++.
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l 35 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDI 35 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHH
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHH
Confidence 34689999999999999999999987
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.63 E-value=0.47 Score=44.30 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=8.1
Q ss_pred cCCCCCceEeccCCccce
Q 042962 257 VDCMKLRSIKISSFCLKS 274 (377)
Q Consensus 257 ~~~~~L~~L~i~~~~L~~ 274 (377)
.+|++|+.+.+..+.++.
T Consensus 283 ~~c~~L~~i~l~~~~i~~ 300 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIET 300 (379)
T ss_dssp TTCTTCCEEEECCTTCCE
T ss_pred ccccccccccccccccce
Confidence 444455544444443433
No 165
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=90.42 E-value=0.14 Score=48.63 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCCCCCCCCcHHHHHHHhhcCChhHH
Q 042962 9 AANGDMISALLAPILHHILSFLSIEQV 35 (377)
Q Consensus 9 ~~~~DriS~LPD~lL~~ILs~Lp~~da 35 (377)
....|.|+.||+|++.+||+||+.+|.
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l 39 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDL 39 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHH
Confidence 345799999999999999999999887
No 166
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=84.94 E-value=0.19 Score=47.80 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.7
Q ss_pred CCCCCCCCCcHH----HHHHHhhcCChhHH
Q 042962 10 ANGDMISALLAP----ILHHILSFLSIEQV 35 (377)
Q Consensus 10 ~~~DriS~LPD~----lL~~ILs~Lp~~da 35 (377)
-..|.|+.||+| |+.+||+||+.++.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l 35 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSL 35 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHH
Confidence 346999999999 99999999999987
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.82 E-value=0.47 Score=40.43 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhC--CceEEEEEeeCCCCCCCCCCcCCCccccccCcccEEEeccccccCC------CCCCCCCCCCeee
Q 042962 90 SSIYRCLRYAVET--NVKELKLGFCCPHSNYPDSYYNLPQLVFYAKSMSLLGLDSCKLESP------RGNVTLSCLRELR 161 (377)
Q Consensus 90 ~~i~~wi~~a~~~--~v~~L~L~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~p------~~~~~l~~L~~L~ 161 (377)
.+++..+..+... .+++|.|.-..... +.....+-..+..-++|+.|+|++|.+... ..+..-+.|++|+
T Consensus 27 t~v~~~l~~ll~~n~~L~~L~L~~nn~ig--d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 27 TDVESCINRLREDDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp CCHHHHHHHHHTTCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHhcCCCccEEECCCCCCCC--HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 4566667666553 35555553100000 001111223344556788888888776321 0122346788888
Q ss_pred ccceeeChHHHHHH---hcCCccccccccccc
Q 042962 162 PRHVCADDQVIKDL---ISGCPLIEFISIISC 190 (377)
Q Consensus 162 L~~~~~~~~~l~~l---~~~cp~Le~L~L~~c 190 (377)
|++|.+++.....+ +..-+.|++|.|+++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88888866555543 333445666666543
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.62 E-value=1.5 Score=34.43 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=32.7
Q ss_pred CCCccccccCcccEEEecccccc-CCC-CCCCCCCCCeeeccceee
Q 042962 124 NLPQLVFYAKSMSLLGLDSCKLE-SPR-GNVTLSCLRELRPRHVCA 167 (377)
Q Consensus 124 ~lp~~l~~~~~L~~L~L~~~~~~-~p~-~~~~l~~L~~L~L~~~~~ 167 (377)
.+|..+ ..+|+.|+|++|.+. +|. .+..+++|++|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 667553 356999999999884 333 467899999999999977
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=70.34 E-value=2.7 Score=35.67 Aligned_cols=60 Identities=8% Similarity=0.216 Sum_probs=33.0
Q ss_pred ccCcccEEEeccc-cccCC------CCCCCCCCCCeeeccceeeChHH---HHHHhcCCccccccccccc
Q 042962 131 YAKSMSLLGLDSC-KLESP------RGNVTLSCLRELRPRHVCADDQV---IKDLISGCPLIEFISIISC 190 (377)
Q Consensus 131 ~~~~L~~L~L~~~-~~~~p------~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~L~~c 190 (377)
.-++|+.|+|+++ .+... ..+..-+.|+.|+|.+|.+++.. +...+...+.|++|+|+++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3466777777764 43210 11233456777777777775433 2333444566666666654
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=45.43 E-value=9.1 Score=29.74 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=26.6
Q ss_pred EEEecccccc---CCCCCCCC-CCCCeeeccceeeChHHHHHHhcCCccccccccc
Q 042962 137 LLGLDSCKLE---SPRGNVTL-SCLRELRPRHVCADDQVIKDLISGCPLIEFISII 188 (377)
Q Consensus 137 ~L~L~~~~~~---~p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~ 188 (377)
.++.++..+. +|. ++ ++|++|+|++|.++.- ....+...++|+.|.|.
T Consensus 12 ~v~Cs~~~L~~~~vP~---~lp~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT---AFPVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLG 63 (130)
T ss_dssp EEECCSSCCCTTTSCS---CCCTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECC
T ss_pred EEEeCCCCCccccCCC---CCCcCCCEEECCCCcCCcc-ChhhhhhccccCEEEec
Confidence 5666666654 232 23 3799999999977210 11223445555555555
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=26.22 E-value=47 Score=20.66 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCCCCCCCcHHHHHHHhhc
Q 042962 11 NGDMISALLAPILHHILSF 29 (377)
Q Consensus 11 ~~DriS~LPD~lL~~ILs~ 29 (377)
+.+-++.||.||-..|+|-
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 3456889999998888875
Done!