BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042963
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UX6|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
           Oxidized Form, Ph 7.5
 pdb|2UX7|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
           Reduced Form, Ph 7.5
 pdb|2UXF|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
           Oxidized Form, Ph 5.5
 pdb|2UXG|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
           Reduced Form, Ph 5.5
          Length = 122

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 126 LRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGNVAVFSNPH 165
           + T +      A  FKS+   NY+V F+ PG   V   PH
Sbjct: 42  VETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPH 81


>pdb|1BQK|A Chain A, Oxidized Pseudoazurin
 pdb|1BQR|A Chain A, Reduced Pseudoazurin
 pdb|1ZIA|A Chain A, Oxidized Pseudoazurin
 pdb|1ZIB|A Chain A, Reduced Pseudoazurin
          Length = 124

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 126 LRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGNVAVFSNPH 165
           + T +      A  FKS+   NY+V F+ PG   V   PH
Sbjct: 42  VETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPH 81


>pdb|2JKW|A Chain A, Pseudoazurin M16f
 pdb|2JKW|B Chain B, Pseudoazurin M16f
          Length = 124

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 126 LRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGNVAVFSNPH 165
           + T +      A  FKS+   NY+V F+ PG   V   PH
Sbjct: 42  VETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPH 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,869,159
Number of Sequences: 62578
Number of extensions: 172781
Number of successful extensions: 307
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)