BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042963
         (171 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli
           (strain K12) GN=cfa PE=1 SV=2
          Length = 382

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)

Query: 15  KGHDVLFLRLDYTGITLSEEQLKYTEM--KVKEAGLQQFFGCCESLLAEHGLLLLQFSSV 72
           +G DV  L  DY  +    +++    M   V       +F   +  L   G+ LL   ++
Sbjct: 211 EGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH--TI 268

Query: 73  PDQCYDEHRLSPGFMKEYVFPGGCLPSLNRI---------------------TSTMTSSS 111
             +  D + + P ++ +Y+FP GCLPS+ +I                     T+ M    
Sbjct: 269 GSKKTDLN-VDP-WINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYE 326

Query: 112 RLC----EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSR 154
           R      EI D  +SE+F R + YY + CA  F++R ++ ++VVFSR
Sbjct: 327 RFLAAWPEIAD-NYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372


>sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli
           O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3
           SV=2
          Length = 382

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)

Query: 15  KGHDVLFLRLDYTGITLSEEQLKYTEM--KVKEAGLQQFFGCCESLLAEHGLLLLQFSSV 72
           +G DV  L  DY  +    +++    M   V       +F   +  L   G+ LL   ++
Sbjct: 211 EGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH--TI 268

Query: 73  PDQCYDEHRLSPGFMKEYVFPGGCLPSLNRI---------------------TSTMTSSS 111
             +  D + + P ++ +Y+FP GCLPS+ +I                     T+ M    
Sbjct: 269 GSKKTDLN-VDP-WINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYE 326

Query: 112 RLC----EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSR 154
           R      EI D  +SE+F R + YY + CA  F++R ++ ++VVFSR
Sbjct: 327 RFLAAWPEIAD-NYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372


>sp|P45509|CFA_CITFR Cyclopropane-fatty-acyl-phospholipid synthase (Fragment)
           OS=Citrobacter freundii GN=cfa PE=3 SV=1
          Length = 89

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 121 FSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSR--PGNVAVF 161
           +S  F R + YY   CA  F++R +  ++V+FSR   G + V+
Sbjct: 46  YSATFRRMFNYYLCACAGAFRARDIELWQVLFSRGVEGGIRVY 88


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,735,181
Number of Sequences: 539616
Number of extensions: 2443688
Number of successful extensions: 5039
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5034
Number of HSP's gapped (non-prelim): 5
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)