Query 042963
Match_columns 171
No_of_seqs 175 out of 2372
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 1.8E-34 3.8E-39 231.5 16.7 149 2-154 59-283 (283)
2 PF02353 CMAS: Mycolic acid cy 100.0 2E-34 4.4E-39 232.4 12.7 148 2-150 49-273 (273)
3 PRK11705 cyclopropane fatty ac 100.0 2.7E-28 5.9E-33 205.2 17.7 149 2-156 154-374 (383)
4 smart00828 PKS_MT Methyltransf 99.7 1.7E-16 3.6E-21 124.0 13.8 130 17-157 1-205 (224)
5 PLN02244 tocopherol O-methyltr 99.6 1.5E-14 3.3E-19 120.2 15.6 151 2-155 100-339 (340)
6 COG2226 UbiE Methylase involve 99.5 8.7E-14 1.9E-18 110.0 9.6 71 5-75 41-162 (238)
7 PF01209 Ubie_methyltran: ubiE 99.4 1.1E-13 2.5E-18 109.4 6.0 70 6-75 38-159 (233)
8 COG2227 UbiG 2-polyprenyl-3-me 99.4 2E-13 4.4E-18 107.1 6.9 132 14-155 58-242 (243)
9 PTZ00098 phosphoethanolamine N 99.4 2.3E-12 4.9E-17 103.7 13.0 105 3-112 40-195 (263)
10 PLN02336 phosphoethanolamine N 99.4 1E-11 2.2E-16 107.3 15.9 103 4-112 255-407 (475)
11 KOG1270 Methyltransferases [Co 99.4 1.4E-12 3E-17 103.4 9.1 97 16-112 90-242 (282)
12 PLN02396 hexaprenyldihydroxybe 99.3 5E-12 1.1E-16 104.4 9.6 110 13-122 129-293 (322)
13 PLN02233 ubiquinone biosynthes 99.3 6.3E-12 1.4E-16 101.0 9.7 67 8-74 66-187 (261)
14 TIGR02752 MenG_heptapren 2-hep 99.3 1.4E-11 3.1E-16 96.6 9.2 68 5-72 35-154 (231)
15 PRK11036 putative S-adenosyl-L 99.3 7.1E-11 1.5E-15 94.3 12.6 108 3-112 33-200 (255)
16 TIGR00452 methyltransferase, p 99.3 8.2E-11 1.8E-15 96.9 11.9 107 3-112 109-266 (314)
17 KOG1540 Ubiquinone biosynthesi 99.2 4.1E-11 8.9E-16 94.8 8.6 98 5-109 90-247 (296)
18 TIGR00080 pimt protein-L-isoas 99.2 5.4E-11 1.2E-15 92.8 7.0 96 4-100 66-208 (215)
19 PRK01683 trans-aconitate 2-met 99.2 1.8E-10 3.9E-15 91.8 9.5 112 3-114 19-182 (258)
20 PRK14103 trans-aconitate 2-met 99.2 2.8E-10 6E-15 90.9 10.3 110 3-112 17-177 (255)
21 PRK15068 tRNA mo(5)U34 methylt 99.2 5.1E-10 1.1E-14 92.6 11.7 106 3-112 110-267 (322)
22 PRK11873 arsM arsenite S-adeno 99.1 3E-10 6.4E-15 91.4 10.0 98 9-112 71-223 (272)
23 TIGR02469 CbiT precorrin-6Y C5 99.1 3.8E-10 8.2E-15 79.5 9.2 68 3-70 7-123 (124)
24 TIGR02716 C20_methyl_CrtF C-20 99.1 5.8E-10 1.2E-14 91.3 11.3 103 5-112 139-299 (306)
25 PF12847 Methyltransf_18: Meth 99.1 2.2E-10 4.8E-15 79.6 6.8 55 15-69 1-111 (112)
26 PRK13944 protein-L-isoaspartat 99.1 2.7E-10 6E-15 88.3 7.7 66 4-69 61-173 (205)
27 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.3E-09 2.9E-14 90.6 11.9 131 5-157 102-283 (340)
28 PRK13942 protein-L-isoaspartat 99.1 2.7E-10 5.9E-15 88.8 7.3 66 3-68 64-175 (212)
29 PRK11207 tellurite resistance 99.1 5.9E-10 1.3E-14 85.9 8.5 64 6-69 21-134 (197)
30 PRK15451 tRNA cmo(5)U34 methyl 99.1 1.8E-09 3.9E-14 86.0 11.5 60 13-72 54-167 (247)
31 COG2518 Pcm Protein-L-isoaspar 99.1 3E-10 6.4E-15 88.0 6.5 98 3-100 60-202 (209)
32 TIGR00477 tehB tellurite resis 99.1 7.9E-10 1.7E-14 85.1 8.7 93 5-109 20-161 (195)
33 TIGR00740 methyltransferase, p 99.0 1.8E-09 4E-14 85.3 9.0 60 13-72 51-164 (239)
34 PRK07402 precorrin-6B methylas 99.0 2.5E-09 5.4E-14 82.1 8.9 64 6-69 31-142 (196)
35 PF01135 PCMT: Protein-L-isoas 99.0 1.4E-09 3E-14 84.8 7.1 96 3-98 60-203 (209)
36 PRK08287 cobalt-precorrin-6Y C 99.0 4E-09 8.6E-14 80.4 8.9 64 6-69 22-131 (187)
37 PRK00107 gidB 16S rRNA methylt 99.0 3.7E-09 8E-14 81.1 8.3 57 12-68 42-144 (187)
38 PRK00312 pcm protein-L-isoaspa 98.9 2.7E-09 5.9E-14 82.8 7.0 97 4-100 67-207 (212)
39 COG2242 CobL Precorrin-6B meth 98.9 7.2E-09 1.6E-13 78.9 8.6 67 6-72 25-138 (187)
40 PRK05134 bifunctional 3-demeth 98.9 9.2E-09 2E-13 80.7 9.6 128 3-131 36-217 (233)
41 PF13489 Methyltransf_23: Meth 98.9 2.7E-09 5.9E-14 78.3 6.2 103 3-112 8-156 (161)
42 PF08003 Methyltransf_9: Prote 98.9 2.2E-08 4.8E-13 81.5 11.2 107 3-112 103-260 (315)
43 PRK10258 biotin biosynthesis p 98.9 5.1E-09 1.1E-13 83.2 7.2 104 4-111 31-179 (251)
44 PRK08317 hypothetical protein; 98.9 2E-08 4.3E-13 78.1 10.3 67 4-70 8-125 (241)
45 PRK00377 cbiT cobalt-precorrin 98.9 1.5E-08 3.2E-13 78.0 8.9 62 7-68 32-144 (198)
46 PF08241 Methyltransf_11: Meth 98.9 2.5E-09 5.3E-14 71.5 3.6 43 25-67 21-95 (95)
47 PRK00517 prmA ribosomal protei 98.8 1.9E-08 4E-13 80.3 8.8 59 13-71 117-215 (250)
48 PRK00216 ubiE ubiquinone/menaq 98.8 2.5E-08 5.5E-13 77.8 9.2 69 5-73 41-162 (239)
49 PRK12335 tellurite resistance 98.8 2.2E-08 4.7E-13 81.5 8.5 91 7-109 112-251 (287)
50 TIGR00138 gidB 16S rRNA methyl 98.8 3E-08 6.4E-13 75.6 8.2 54 15-68 42-141 (181)
51 PRK04266 fibrillarin; Provisio 98.8 3E-08 6.5E-13 78.2 8.4 59 10-68 67-175 (226)
52 PF13847 Methyltransf_31: Meth 98.8 1.9E-08 4.1E-13 74.1 6.6 58 14-71 2-112 (152)
53 PRK13943 protein-L-isoaspartat 98.8 3.9E-08 8.4E-13 81.4 9.0 65 4-68 69-179 (322)
54 TIGR00406 prmA ribosomal prote 98.7 7.7E-08 1.7E-12 78.4 9.0 59 13-71 157-261 (288)
55 PRK14967 putative methyltransf 98.7 8.9E-08 1.9E-12 75.0 8.7 46 3-48 24-84 (223)
56 TIGR00537 hemK_rel_arch HemK-r 98.7 7.3E-08 1.6E-12 72.9 7.9 42 6-47 10-65 (179)
57 PF03848 TehB: Tellurite resis 98.7 8.1E-08 1.8E-12 73.9 8.1 67 6-72 21-136 (192)
58 TIGR03840 TMPT_Se_Te thiopurin 98.7 8.4E-08 1.8E-12 75.0 7.7 91 5-109 24-178 (213)
59 TIGR02021 BchM-ChlM magnesium 98.7 1E-07 2.2E-12 74.3 8.0 99 6-112 44-199 (219)
60 TIGR00091 tRNA (guanine-N(7)-) 98.6 9.6E-08 2.1E-12 73.4 6.9 36 14-49 15-66 (194)
61 COG4976 Predicted methyltransf 98.6 7.2E-08 1.6E-12 75.6 6.2 70 3-72 113-228 (287)
62 PLN02232 ubiquinone biosynthes 98.6 8.5E-08 1.9E-12 71.6 6.1 48 27-74 1-86 (160)
63 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.2E-07 7E-12 70.8 9.6 68 5-72 29-146 (223)
64 TIGR01983 UbiG ubiquinone bios 98.6 4.9E-07 1.1E-11 70.3 10.4 109 4-112 30-196 (224)
65 PRK11088 rrmA 23S rRNA methylt 98.6 8.9E-08 1.9E-12 77.2 6.3 64 6-69 76-181 (272)
66 PRK09489 rsmC 16S ribosomal RN 98.6 1.8E-07 3.9E-12 78.0 8.2 64 5-68 186-302 (342)
67 COG4106 Tam Trans-aconitate me 98.6 1E-07 2.2E-12 74.2 6.2 109 4-112 19-179 (257)
68 PRK00121 trmB tRNA (guanine-N( 98.6 2.1E-07 4.6E-12 72.0 7.8 34 15-48 40-89 (202)
69 PF06325 PrmA: Ribosomal prote 98.6 1E-07 2.2E-12 78.0 6.2 61 13-73 159-263 (295)
70 KOG1271 Methyltransferases [Ge 98.6 9.8E-08 2.1E-12 72.5 5.6 71 3-73 51-185 (227)
71 PF05175 MTS: Methyltransferas 98.6 8.5E-08 1.8E-12 72.2 5.3 63 6-68 22-139 (170)
72 PRK15001 SAM-dependent 23S rib 98.6 2.2E-07 4.8E-12 78.4 8.2 64 5-68 218-339 (378)
73 PRK06922 hypothetical protein; 98.6 2.3E-07 5.1E-12 82.5 8.6 64 9-72 412-540 (677)
74 PRK11188 rrmJ 23S rRNA methylt 98.6 3.2E-07 7E-12 71.4 8.0 69 3-71 38-167 (209)
75 KOG1541 Predicted protein carb 98.6 2.8E-07 6.1E-12 71.9 7.4 70 3-72 36-163 (270)
76 TIGR01177 conserved hypothetic 98.5 4.5E-07 9.8E-12 75.1 9.0 44 6-49 173-230 (329)
77 PRK14904 16S rRNA methyltransf 98.5 3.7E-07 8E-12 78.6 8.8 43 6-48 241-300 (445)
78 PRK14121 tRNA (guanine-N(7)-)- 98.5 3.8E-07 8.3E-12 77.0 8.6 65 5-69 112-235 (390)
79 PLN03075 nicotianamine synthas 98.5 3.4E-07 7.4E-12 74.7 8.0 62 8-69 116-233 (296)
80 TIGR00563 rsmB ribosomal RNA s 98.5 4.6E-07 9.9E-12 77.6 8.9 43 6-48 229-287 (426)
81 PTZ00146 fibrillarin; Provisio 98.5 6.5E-07 1.4E-11 72.9 9.1 65 3-67 116-235 (293)
82 COG2264 PrmA Ribosomal protein 98.5 4.4E-07 9.5E-12 74.1 8.1 61 13-73 160-267 (300)
83 TIGR00446 nop2p NOL1/NOP2/sun 98.5 6.8E-07 1.5E-11 71.9 9.1 41 8-48 64-121 (264)
84 PRK14903 16S rRNA methyltransf 98.5 6.4E-07 1.4E-11 76.9 8.8 42 7-48 229-287 (431)
85 PF08242 Methyltransf_12: Meth 98.5 2.1E-08 4.6E-13 68.4 -0.2 41 25-65 22-99 (99)
86 PRK05785 hypothetical protein; 98.5 3.2E-07 7E-12 72.3 6.5 49 14-62 50-140 (226)
87 PRK10901 16S rRNA methyltransf 98.5 7.1E-07 1.5E-11 76.5 8.8 43 6-48 235-293 (427)
88 PRK13255 thiopurine S-methyltr 98.5 9.2E-07 2E-11 69.4 8.3 91 5-109 27-181 (218)
89 TIGR03438 probable methyltrans 98.5 7.6E-07 1.6E-11 73.0 8.1 57 13-69 61-177 (301)
90 COG2519 GCD14 tRNA(1-methylade 98.5 1.1E-06 2.3E-11 69.9 8.5 66 4-69 83-195 (256)
91 PLN02336 phosphoethanolamine N 98.4 7.4E-07 1.6E-11 77.1 7.9 69 4-72 26-145 (475)
92 PF13649 Methyltransf_25: Meth 98.4 2.8E-07 6.1E-12 63.2 4.0 24 25-48 26-49 (101)
93 PF13659 Methyltransf_26: Meth 98.4 4.7E-07 1E-11 63.3 5.2 33 16-48 1-48 (117)
94 PRK14901 16S rRNA methyltransf 98.4 1.3E-06 2.8E-11 75.1 8.9 43 6-48 243-302 (434)
95 PRK14902 16S rRNA methyltransf 98.4 1.3E-06 2.9E-11 75.1 8.8 43 6-48 241-300 (444)
96 KOG4300 Predicted methyltransf 98.4 8E-07 1.7E-11 68.8 6.4 56 14-69 75-182 (252)
97 TIGR02072 BioC biotin biosynth 98.4 1.3E-06 2.8E-11 68.0 7.7 58 14-72 33-138 (240)
98 PLN02781 Probable caffeoyl-CoA 98.4 1.2E-06 2.5E-11 69.5 7.4 64 7-70 60-179 (234)
99 PRK07580 Mg-protoporphyrin IX 98.4 3.9E-06 8.4E-11 65.4 9.9 36 12-47 60-109 (230)
100 PRK14968 putative methyltransf 98.4 1.9E-06 4.2E-11 64.9 7.8 42 5-46 13-68 (188)
101 TIGR03533 L3_gln_methyl protei 98.3 2.5E-06 5.4E-11 69.4 8.5 38 11-48 117-170 (284)
102 PRK06202 hypothetical protein; 98.3 2E-06 4.3E-11 67.6 7.3 60 12-73 57-170 (232)
103 PF05401 NodS: Nodulation prot 98.3 1.3E-06 2.9E-11 67.2 5.3 68 2-69 29-146 (201)
104 smart00138 MeTrc Methyltransfe 98.3 1.6E-06 3.5E-11 69.8 6.1 34 9-42 93-151 (264)
105 PF03291 Pox_MCEL: mRNA cappin 98.3 1.8E-06 3.9E-11 71.7 6.1 56 15-70 62-187 (331)
106 TIGR03534 RF_mod_PrmC protein- 98.3 5E-06 1.1E-10 65.6 8.2 44 4-48 77-136 (251)
107 COG4123 Predicted O-methyltran 98.2 5.3E-06 1.1E-10 66.1 7.9 43 7-49 36-94 (248)
108 PLN02585 magnesium protoporphy 98.2 7.6E-06 1.6E-10 67.6 9.0 42 5-46 131-189 (315)
109 COG4122 Predicted O-methyltran 98.2 7.1E-06 1.5E-10 64.4 8.4 70 4-73 48-170 (219)
110 COG2813 RsmC 16S RNA G1207 met 98.2 5.1E-06 1.1E-10 67.7 7.8 65 5-69 148-266 (300)
111 PRK09328 N5-glutamine S-adenos 98.2 7.9E-06 1.7E-10 65.5 8.3 40 5-44 98-153 (275)
112 PRK11805 N5-glutamine S-adenos 98.2 8.9E-06 1.9E-10 66.9 8.3 33 16-48 134-182 (307)
113 TIGR03704 PrmC_rel_meth putati 98.2 1E-05 2.2E-10 64.8 8.3 44 5-48 75-135 (251)
114 TIGR00536 hemK_fam HemK family 98.2 8.9E-06 1.9E-10 66.1 8.1 34 15-48 114-163 (284)
115 PRK14966 unknown domain/N5-glu 98.1 9.3E-06 2E-10 69.3 8.0 36 13-48 249-300 (423)
116 PF05724 TPMT: Thiopurine S-me 98.1 2.9E-06 6.4E-11 66.6 4.6 68 4-71 26-157 (218)
117 KOG2899 Predicted methyltransf 98.1 4.6E-06 9.9E-11 66.0 5.4 31 14-44 57-103 (288)
118 TIGR03587 Pse_Me-ase pseudamin 98.1 7.6E-06 1.6E-10 63.5 6.6 32 12-43 40-87 (204)
119 PRK04457 spermidine synthase; 98.1 9.5E-06 2.1E-10 65.3 7.3 60 13-72 64-180 (262)
120 PLN02476 O-methyltransferase 98.1 1.2E-05 2.6E-10 65.2 7.9 65 7-71 110-230 (278)
121 PRK01544 bifunctional N5-gluta 98.1 1.1E-05 2.4E-10 70.6 8.2 34 15-48 138-187 (506)
122 KOG2361 Predicted methyltransf 98.1 9.5E-06 2.1E-10 64.1 7.0 94 18-112 74-230 (264)
123 PF08704 GCD14: tRNA methyltra 98.1 8.9E-06 1.9E-10 65.0 6.7 46 4-49 29-91 (247)
124 PRK00811 spermidine synthase; 98.1 1.3E-05 2.8E-10 65.3 7.4 56 14-69 75-191 (283)
125 PF01596 Methyltransf_3: O-met 98.1 1.1E-05 2.3E-10 62.9 6.1 61 12-72 42-158 (205)
126 PRK13168 rumA 23S rRNA m(5)U19 98.0 2.2E-05 4.8E-10 67.6 8.6 47 3-49 285-345 (443)
127 PF02390 Methyltransf_4: Putat 98.0 1.3E-05 2.7E-10 61.9 5.8 52 18-69 20-133 (195)
128 PRK13256 thiopurine S-methyltr 98.0 2E-05 4.4E-10 62.1 7.0 65 6-70 34-164 (226)
129 PLN02366 spermidine synthase 97.9 3.6E-05 7.7E-10 63.5 7.5 57 13-69 89-206 (308)
130 TIGR00438 rrmJ cell division p 97.9 5.8E-05 1.3E-09 57.4 8.1 33 3-35 19-69 (188)
131 PRK15128 23S rRNA m(5)C1962 me 97.9 7.5E-05 1.6E-09 63.6 8.6 36 13-48 218-268 (396)
132 TIGR00479 rumA 23S rRNA (uraci 97.9 7E-05 1.5E-09 64.2 8.5 46 4-49 281-340 (431)
133 COG2890 HemK Methylase of poly 97.9 6.1E-05 1.3E-09 61.3 7.7 31 18-48 113-159 (280)
134 PRK11933 yebU rRNA (cytosine-C 97.9 7.7E-05 1.7E-09 64.8 8.7 65 9-73 105-246 (470)
135 KOG3010 Methyltransferase [Gen 97.9 2.8E-05 6E-10 61.5 5.2 63 9-71 26-139 (261)
136 TIGR00417 speE spermidine synt 97.8 8.3E-05 1.8E-09 60.0 7.9 55 14-68 71-185 (270)
137 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.0001 2.2E-09 67.1 8.7 35 14-48 537-586 (702)
138 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00011 2.4E-09 58.7 7.5 63 9-71 73-192 (247)
139 smart00650 rADc Ribosomal RNA 97.8 7E-05 1.5E-09 56.1 5.9 41 4-44 2-56 (169)
140 KOG2904 Predicted methyltransf 97.7 0.0002 4.3E-09 57.9 8.2 38 12-49 145-198 (328)
141 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00017 3.8E-09 59.1 8.0 41 4-44 8-65 (296)
142 PRK00274 ksgA 16S ribosomal RN 97.7 7.6E-05 1.7E-09 60.3 5.7 41 4-44 31-85 (272)
143 PHA03411 putative methyltransf 97.7 0.00017 3.7E-09 58.5 7.3 32 12-43 61-108 (279)
144 PTZ00338 dimethyladenosine tra 97.6 0.00013 2.8E-09 59.8 6.3 45 3-47 24-82 (294)
145 PRK01581 speE spermidine synth 97.6 0.00013 2.9E-09 61.3 6.5 56 14-69 149-268 (374)
146 PRK03612 spermidine synthase; 97.6 0.00011 2.4E-09 64.6 6.2 57 13-69 295-415 (521)
147 COG0220 Predicted S-adenosylme 97.6 0.00016 3.4E-09 57.1 6.2 52 17-68 50-163 (227)
148 TIGR00478 tly hemolysin TlyA f 97.6 0.0003 6.5E-09 55.6 7.1 36 3-38 62-113 (228)
149 PRK03522 rumB 23S rRNA methylu 97.6 0.00039 8.4E-09 57.4 8.1 44 6-49 164-221 (315)
150 PRK14896 ksgA 16S ribosomal RN 97.6 0.00018 3.8E-09 57.8 5.9 43 2-44 16-72 (258)
151 KOG1975 mRNA cap methyltransfe 97.5 0.00019 4.1E-09 59.2 5.9 36 10-45 112-162 (389)
152 COG1092 Predicted SAM-dependen 97.5 0.00027 5.8E-09 60.0 6.9 55 15-69 217-336 (393)
153 COG0144 Sun tRNA and rRNA cyto 97.5 0.00064 1.4E-08 57.1 9.0 66 8-73 149-292 (355)
154 KOG1661 Protein-L-isoaspartate 97.5 0.00015 3.3E-09 56.4 4.7 66 4-69 69-193 (237)
155 cd02440 AdoMet_MTases S-adenos 97.4 0.00056 1.2E-08 44.9 6.4 25 18-42 1-40 (107)
156 KOG3045 Predicted RNA methylas 97.4 0.00017 3.7E-09 57.8 4.1 71 2-72 166-267 (325)
157 KOG1269 SAM-dependent methyltr 97.4 0.00022 4.9E-09 60.0 4.4 66 9-74 104-220 (364)
158 PRK10909 rsmD 16S rRNA m(2)G96 97.4 0.0014 3.1E-08 50.7 8.5 43 7-49 44-102 (199)
159 TIGR02085 meth_trns_rumB 23S r 97.3 0.0011 2.5E-08 55.9 8.2 44 6-49 224-281 (374)
160 KOG1663 O-methyltransferase [S 97.3 0.0012 2.5E-08 52.1 7.1 63 7-69 65-183 (237)
161 TIGR00755 ksgA dimethyladenosi 97.3 0.00069 1.5E-08 54.1 5.9 42 3-44 17-72 (253)
162 PF07021 MetW: Methionine bios 97.2 0.00038 8.2E-09 53.5 4.0 30 13-42 11-55 (193)
163 PRK01544 bifunctional N5-gluta 97.2 0.001 2.2E-08 58.4 7.0 55 14-68 346-461 (506)
164 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.0012 2.6E-08 53.1 6.7 53 50-112 180-232 (256)
165 COG1041 Predicted DNA modifica 97.2 0.00096 2.1E-08 55.6 6.3 67 3-69 184-310 (347)
166 PF05219 DREV: DREV methyltran 97.2 0.0014 3.1E-08 52.6 6.8 52 15-70 94-189 (265)
167 PF10672 Methyltrans_SAM: S-ad 97.1 0.0025 5.4E-08 52.0 8.0 36 14-49 122-172 (286)
168 PF12147 Methyltransf_20: Puta 97.1 0.0036 7.8E-08 51.1 8.7 92 14-112 134-291 (311)
169 TIGR02081 metW methionine bios 97.0 0.0015 3.2E-08 49.9 5.4 36 4-41 4-54 (194)
170 PF08123 DOT1: Histone methyla 97.0 0.0052 1.1E-07 47.8 8.5 40 4-43 31-86 (205)
171 PF00891 Methyltransf_2: O-met 97.0 0.002 4.4E-08 50.8 5.9 66 5-74 90-204 (241)
172 PF05891 Methyltransf_PK: AdoM 97.0 0.0032 7E-08 49.3 6.9 88 15-112 55-194 (218)
173 TIGR03439 methyl_EasF probable 96.9 0.0036 7.8E-08 51.9 7.0 32 13-44 74-125 (319)
174 PRK04148 hypothetical protein; 96.8 0.0027 5.9E-08 46.2 5.2 38 5-42 6-58 (134)
175 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0057 1.2E-07 49.8 7.5 43 7-49 77-136 (283)
176 PF06080 DUF938: Protein of un 96.8 0.018 4E-07 44.7 9.8 61 50-111 122-184 (204)
177 PF01728 FtsJ: FtsJ-like methy 96.8 0.0019 4.1E-08 48.7 4.2 32 3-34 8-59 (181)
178 KOG1499 Protein arginine N-met 96.7 0.0031 6.7E-08 52.5 5.4 37 12-49 57-108 (346)
179 COG2263 Predicted RNA methylas 96.7 0.0061 1.3E-07 46.8 6.3 36 10-45 40-90 (198)
180 PF01170 UPF0020: Putative RNA 96.7 0.0087 1.9E-07 45.4 7.2 45 5-49 18-87 (179)
181 PF05148 Methyltransf_8: Hypot 96.7 0.00045 9.7E-09 53.8 0.1 70 3-72 59-161 (219)
182 PRK11727 23S rRNA mA1618 methy 96.7 0.0044 9.5E-08 51.4 5.9 35 15-49 114-165 (321)
183 COG2265 TrmA SAM-dependent met 96.6 0.012 2.6E-07 50.8 8.3 47 3-49 281-341 (432)
184 PHA03412 putative methyltransf 96.5 0.0047 1E-07 49.2 4.9 30 15-44 49-97 (241)
185 TIGR00006 S-adenosyl-methyltra 96.5 0.019 4.2E-07 47.3 8.7 42 4-45 9-66 (305)
186 TIGR00095 RNA methyltransferas 96.5 0.017 3.6E-07 44.3 7.6 36 14-49 48-98 (189)
187 PLN02823 spermine synthase 96.5 0.0089 1.9E-07 49.9 6.5 56 15-70 103-221 (336)
188 PRK04338 N(2),N(2)-dimethylgua 96.4 0.016 3.5E-07 49.2 7.7 54 15-68 57-157 (382)
189 KOG1500 Protein arginine N-met 96.4 0.0084 1.8E-07 50.1 5.7 41 8-49 170-225 (517)
190 COG0421 SpeE Spermidine syntha 96.4 0.012 2.5E-07 48.1 6.5 56 12-68 74-189 (282)
191 TIGR02143 trmA_only tRNA (urac 96.3 0.0074 1.6E-07 50.7 5.4 45 4-49 187-245 (353)
192 COG0030 KsgA Dimethyladenosine 96.3 0.0098 2.1E-07 47.9 5.6 42 3-44 18-73 (259)
193 PF01269 Fibrillarin: Fibrilla 96.2 0.024 5.2E-07 44.7 7.2 66 3-68 57-177 (229)
194 PF02475 Met_10: Met-10+ like- 96.2 0.0081 1.8E-07 46.6 4.6 37 13-49 99-151 (200)
195 COG1064 AdhP Zn-dependent alco 96.2 0.021 4.7E-07 47.6 7.3 64 8-71 159-261 (339)
196 PF06962 rRNA_methylase: Putat 96.2 0.0063 1.4E-07 44.5 3.7 49 25-73 1-96 (140)
197 COG2521 Predicted archaeal met 96.1 0.002 4.3E-08 51.2 0.8 58 10-67 129-243 (287)
198 PRK05031 tRNA (uracil-5-)-meth 96.0 0.016 3.4E-07 48.8 5.6 45 4-49 196-254 (362)
199 PF01739 CheR: CheR methyltran 95.9 0.012 2.7E-07 45.4 4.4 30 12-41 28-82 (196)
200 PF01564 Spermine_synth: Sperm 95.8 0.018 4E-07 45.9 5.2 56 14-69 75-191 (246)
201 COG0275 Predicted S-adenosylme 95.8 0.07 1.5E-06 43.8 8.5 42 4-45 12-70 (314)
202 PRK00536 speE spermidine synth 95.8 0.037 8E-07 44.7 6.8 56 14-69 71-171 (262)
203 PF03059 NAS: Nicotianamine sy 95.8 0.043 9.4E-07 44.6 7.3 59 10-68 112-229 (276)
204 KOG0820 Ribosomal RNA adenine 95.8 0.021 4.6E-07 46.3 5.3 44 4-47 47-104 (315)
205 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.03 6.5E-07 47.0 6.4 46 3-49 185-244 (352)
206 PF05185 PRMT5: PRMT5 arginine 95.7 0.021 4.5E-07 49.5 5.4 51 16-66 187-294 (448)
207 PF02384 N6_Mtase: N-6 DNA Met 95.7 0.047 1E-06 44.6 7.3 45 4-48 35-102 (311)
208 KOG4589 Cell division protein 95.6 0.042 9.1E-07 42.4 6.1 22 53-74 168-189 (232)
209 PF07091 FmrO: Ribosomal RNA m 95.6 0.03 6.5E-07 44.8 5.5 57 4-73 92-166 (251)
210 KOG3420 Predicted RNA methylas 95.5 0.011 2.4E-07 43.7 2.5 39 11-49 44-97 (185)
211 COG0293 FtsJ 23S rRNA methylas 95.5 0.061 1.3E-06 41.8 6.7 31 3-33 32-80 (205)
212 PF03141 Methyltransf_29: Puta 95.5 0.0089 1.9E-07 52.0 2.2 20 50-69 200-219 (506)
213 PF02527 GidB: rRNA small subu 95.4 0.1 2.2E-06 39.9 7.7 51 18-68 51-147 (184)
214 PLN02672 methionine S-methyltr 95.4 0.021 4.6E-07 54.3 4.6 31 16-46 119-165 (1082)
215 PRK10611 chemotaxis methyltran 95.1 0.056 1.2E-06 44.2 5.8 18 25-42 149-166 (287)
216 PF13578 Methyltransf_24: Meth 95.1 0.023 5.1E-07 38.8 3.0 20 50-69 86-105 (106)
217 PF04816 DUF633: Family of unk 95.0 0.1 2.2E-06 40.6 6.7 31 19-49 1-47 (205)
218 PF11968 DUF3321: Putative met 94.9 0.019 4.1E-07 45.0 2.3 48 17-64 53-139 (219)
219 PF13679 Methyltransf_32: Meth 94.9 0.11 2.3E-06 37.7 6.2 36 12-47 22-77 (141)
220 PF10294 Methyltransf_16: Puta 94.8 0.13 2.8E-06 38.7 6.6 58 11-69 41-156 (173)
221 PF01795 Methyltransf_5: MraW 94.7 0.037 8.1E-07 45.7 3.8 41 4-44 9-65 (310)
222 KOG1122 tRNA and rRNA cytosine 94.7 0.1 2.2E-06 44.7 6.4 40 10-49 236-292 (460)
223 COG4262 Predicted spermidine s 94.7 0.12 2.7E-06 43.7 6.7 57 13-69 287-407 (508)
224 KOG2915 tRNA(1-methyladenosine 94.7 0.14 3.1E-06 41.6 6.8 46 4-49 94-156 (314)
225 KOG0024 Sorbitol dehydrogenase 94.7 0.17 3.8E-06 42.0 7.4 70 6-75 160-279 (354)
226 PRK11760 putative 23S rRNA C24 94.6 0.049 1.1E-06 45.7 4.3 31 3-33 191-243 (357)
227 TIGR01444 fkbM_fam methyltrans 94.3 0.07 1.5E-06 38.2 4.1 31 18-48 1-47 (143)
228 KOG3178 Hydroxyindole-O-methyl 94.1 0.25 5.4E-06 41.3 7.3 60 13-73 175-279 (342)
229 COG1889 NOP1 Fibrillarin-like 94.0 0.23 5E-06 38.7 6.5 60 9-68 70-179 (231)
230 KOG1331 Predicted methyltransf 94.0 0.052 1.1E-06 44.2 3.0 60 14-73 44-147 (293)
231 PF03602 Cons_hypoth95: Conser 93.9 0.23 5E-06 37.8 6.3 36 14-49 41-91 (183)
232 PF00398 RrnaAD: Ribosomal RNA 93.8 0.16 3.5E-06 40.7 5.7 42 3-44 18-73 (262)
233 KOG3191 Predicted N6-DNA-methy 93.8 0.46 9.9E-06 36.6 7.6 54 11-64 39-111 (209)
234 TIGR00308 TRM1 tRNA(guanine-26 93.7 0.52 1.1E-05 40.0 8.7 54 16-69 45-147 (374)
235 COG2520 Predicted methyltransf 93.5 0.31 6.6E-06 40.9 6.9 61 13-73 186-293 (341)
236 KOG2187 tRNA uracil-5-methyltr 93.5 0.084 1.8E-06 46.2 3.6 45 5-49 373-431 (534)
237 COG1352 CheR Methylase of chem 93.4 0.12 2.7E-06 41.8 4.2 19 50-68 222-240 (268)
238 COG4798 Predicted methyltransf 93.2 0.14 3E-06 39.8 4.1 21 50-70 147-167 (238)
239 PF04672 Methyltransf_19: S-ad 93.1 0.23 4.9E-06 40.2 5.4 69 5-73 57-194 (267)
240 PF09243 Rsm22: Mitochondrial 93.1 0.28 6.1E-06 39.7 5.9 31 15-45 33-80 (274)
241 PF05971 Methyltransf_10: Prot 92.9 0.28 6.2E-06 40.3 5.7 34 16-49 103-153 (299)
242 COG3963 Phospholipid N-methylt 92.6 0.6 1.3E-05 35.5 6.6 68 5-72 38-159 (194)
243 COG1189 Predicted rRNA methyla 92.5 0.3 6.5E-06 38.9 5.1 65 3-67 66-176 (245)
244 KOG2198 tRNA cytosine-5-methyl 92.4 0.58 1.3E-05 39.5 7.0 25 50-74 277-301 (375)
245 PF01861 DUF43: Protein of unk 92.3 1.8 3.9E-05 34.6 9.3 38 12-49 41-93 (243)
246 COG2384 Predicted SAM-dependen 91.4 0.79 1.7E-05 36.1 6.4 36 14-49 15-66 (226)
247 PF11899 DUF3419: Protein of u 91.3 0.5 1.1E-05 40.2 5.6 37 7-43 27-77 (380)
248 KOG2940 Predicted methyltransf 91.1 0.18 3.8E-06 40.3 2.5 59 14-74 71-178 (325)
249 PRK11783 rlmL 23S rRNA m(2)G24 90.9 1.1 2.3E-05 41.2 7.7 24 26-49 259-282 (702)
250 PF09445 Methyltransf_15: RNA 90.8 0.44 9.6E-06 35.8 4.3 33 17-49 1-47 (163)
251 TIGR02822 adh_fam_2 zinc-bindi 90.5 1 2.2E-05 37.0 6.6 63 8-70 158-255 (329)
252 PF00107 ADH_zinc_N: Zinc-bind 90.1 0.24 5.1E-06 34.7 2.2 50 23-72 14-92 (130)
253 KOG3115 Methyltransferase-like 89.3 1.1 2.4E-05 35.1 5.4 33 15-47 60-108 (249)
254 KOG1709 Guanidinoacetate methy 88.9 1.2 2.6E-05 35.3 5.4 67 3-69 89-206 (271)
255 PF06859 Bin3: Bicoid-interact 88.6 0.51 1.1E-05 33.1 2.9 28 41-68 16-43 (110)
256 PRK09880 L-idonate 5-dehydroge 87.8 1.7 3.6E-05 35.8 6.1 63 8-70 162-267 (343)
257 cd08254 hydroxyacyl_CoA_DH 6-h 87.6 2.3 4.9E-05 34.3 6.7 63 8-70 158-264 (338)
258 cd08237 ribitol-5-phosphate_DH 87.4 2.2 4.7E-05 35.2 6.6 61 10-70 158-257 (341)
259 COG0357 GidB Predicted S-adeno 87.4 1.5 3.3E-05 34.4 5.3 34 16-49 68-117 (215)
260 PHA01634 hypothetical protein 87.4 1.4 3E-05 32.1 4.5 31 15-45 28-73 (156)
261 TIGR03451 mycoS_dep_FDH mycoth 87.3 1.8 4E-05 35.8 6.1 64 7-70 168-277 (358)
262 cd08281 liver_ADH_like1 Zinc-d 86.9 2 4.3E-05 35.8 6.1 64 7-70 183-291 (371)
263 COG1063 Tdh Threonine dehydrog 86.8 2.7 5.9E-05 35.1 6.8 66 9-74 162-274 (350)
264 PRK10742 putative methyltransf 86.6 2.2 4.7E-05 34.3 5.8 42 5-46 76-133 (250)
265 KOG3987 Uncharacterized conser 86.4 0.4 8.7E-06 37.7 1.5 53 16-68 113-206 (288)
266 KOG2352 Predicted spermine/spe 86.0 1.2 2.5E-05 39.0 4.2 57 14-70 46-162 (482)
267 KOG1596 Fibrillarin and relate 85.6 1.2 2.5E-05 36.0 3.7 34 9-42 150-204 (317)
268 COG5459 Predicted rRNA methyla 85.0 2.7 5.8E-05 35.7 5.8 56 16-71 114-227 (484)
269 PF03492 Methyltransf_7: SAM d 84.8 14 0.00031 30.8 10.1 68 46-114 160-247 (334)
270 TIGR03366 HpnZ_proposed putati 84.5 3.7 8E-05 32.7 6.4 64 7-70 112-219 (280)
271 COG0604 Qor NADPH:quinone redu 83.0 4.4 9.6E-05 33.6 6.4 65 6-70 133-242 (326)
272 COG1062 AdhC Zn-dependent alco 82.0 4.5 9.7E-05 34.1 5.9 68 6-73 176-289 (366)
273 TIGR02825 B4_12hDH leukotriene 81.5 5.3 0.00012 32.3 6.3 63 7-69 130-237 (325)
274 COG0742 N6-adenine-specific me 81.5 15 0.00032 28.2 8.2 42 8-49 34-92 (187)
275 cd08239 THR_DH_like L-threonin 81.2 5.2 0.00011 32.5 6.2 64 7-70 155-263 (339)
276 PF07942 N2227: N2227-like pro 80.9 5 0.00011 32.6 5.7 73 50-133 183-260 (270)
277 PF03269 DUF268: Caenorhabditi 80.4 9.1 0.0002 28.9 6.5 20 50-69 92-111 (177)
278 COG0116 Predicted N6-adenine-s 80.0 8.2 0.00018 32.9 6.9 42 26-67 257-305 (381)
279 KOG0023 Alcohol dehydrogenase, 79.9 9.9 0.00021 31.9 7.2 65 8-72 174-282 (360)
280 cd08294 leukotriene_B4_DH_like 77.9 7.8 0.00017 31.1 6.1 61 8-68 136-240 (329)
281 cd08255 2-desacetyl-2-hydroxye 77.5 10 0.00023 29.6 6.7 62 8-69 90-190 (277)
282 PF04445 SAM_MT: Putative SAM- 76.3 4.6 0.0001 32.1 4.2 39 5-43 63-117 (234)
283 PLN03154 putative allyl alcoho 75.9 9.2 0.0002 31.6 6.1 62 8-69 151-258 (348)
284 cd05188 MDR Medium chain reduc 75.4 27 0.0006 26.7 8.5 31 12-42 131-177 (271)
285 COG4627 Uncharacterized protei 75.2 2.9 6.2E-05 31.5 2.6 19 50-68 67-85 (185)
286 cd08261 Zn_ADH7 Alcohol dehydr 74.6 13 0.00028 30.1 6.6 61 9-69 153-258 (337)
287 PRK11524 putative methyltransf 74.2 10 0.00023 30.6 5.9 32 13-44 206-251 (284)
288 PF04989 CmcI: Cephalosporin h 73.6 2.7 6E-05 32.7 2.3 18 17-34 34-71 (206)
289 cd08230 glucose_DH Glucose deh 73.2 23 0.00049 29.1 7.8 62 10-71 167-271 (355)
290 PLN02827 Alcohol dehydrogenase 72.6 13 0.00029 31.1 6.4 62 9-70 187-296 (378)
291 PLN02668 indole-3-acetate carb 72.6 61 0.0013 27.8 13.0 68 46-114 214-303 (386)
292 KOG4058 Uncharacterized conser 72.5 10 0.00023 28.4 4.9 65 3-67 60-144 (199)
293 COG2130 Putative NADP-dependen 72.4 19 0.00042 30.0 6.9 64 6-69 141-249 (340)
294 COG3129 Predicted SAM-dependen 72.3 8.8 0.00019 30.8 4.8 36 14-49 77-129 (292)
295 PLN02740 Alcohol dehydrogenase 72.1 12 0.00026 31.3 6.0 64 7-70 190-301 (381)
296 PF01555 N6_N4_Mtase: DNA meth 71.4 2.6 5.6E-05 32.0 1.7 20 50-69 37-56 (231)
297 PF02005 TRM: N2,N2-dimethylgu 70.5 8.4 0.00018 32.8 4.7 45 25-69 76-154 (377)
298 TIGR02818 adh_III_F_hyde S-(hy 69.4 19 0.00042 29.9 6.7 63 8-70 178-288 (368)
299 PRK13699 putative methylase; P 69.3 17 0.00037 28.5 5.9 40 5-45 154-207 (227)
300 cd08295 double_bond_reductase_ 68.5 19 0.00042 29.3 6.4 61 9-69 145-251 (338)
301 PF11599 AviRa: RRNA methyltra 68.2 38 0.00083 26.9 7.5 37 8-44 44-98 (246)
302 KOG1197 Predicted quinone oxid 67.7 17 0.00037 29.8 5.6 62 7-68 138-244 (336)
303 TIGR02987 met_A_Alw26 type II 67.3 11 0.00024 33.3 4.9 33 15-47 31-87 (524)
304 PRK11524 putative methyltransf 67.3 4.9 0.00011 32.5 2.6 19 50-68 61-79 (284)
305 PRK13699 putative methylase; P 66.8 4.9 0.00011 31.6 2.4 18 50-67 53-70 (227)
306 PRK10309 galactitol-1-phosphat 66.2 23 0.00051 28.9 6.5 62 9-70 154-261 (347)
307 cd08242 MDR_like Medium chain 65.6 39 0.00085 27.0 7.6 62 7-68 147-244 (319)
308 cd00401 AdoHcyase S-adenosyl-L 65.1 37 0.00081 29.3 7.6 66 4-69 189-289 (413)
309 cd08285 NADP_ADH NADP(H)-depen 63.4 26 0.00057 28.6 6.3 63 8-70 159-267 (351)
310 cd08245 CAD Cinnamyl alcohol d 62.1 32 0.0007 27.6 6.5 62 8-69 155-256 (330)
311 cd08293 PTGR2 Prostaglandin re 61.5 40 0.00087 27.3 7.0 60 9-68 146-253 (345)
312 COG3897 Predicted methyltransf 60.9 15 0.00033 28.7 4.0 43 7-49 71-128 (218)
313 COG1867 TRM1 N2,N2-dimethylgua 60.8 21 0.00046 30.4 5.2 48 22-69 74-154 (380)
314 PRK05476 S-adenosyl-L-homocyst 60.7 59 0.0013 28.2 8.0 58 12-69 207-299 (425)
315 cd08233 butanediol_DH_like (2R 60.5 35 0.00076 27.8 6.5 63 8-70 165-273 (351)
316 COG5379 BtaA S-adenosylmethion 59.5 22 0.00048 29.6 4.9 36 9-44 57-106 (414)
317 cd08283 FDH_like_1 Glutathione 59.2 22 0.00049 29.7 5.2 34 9-42 178-228 (386)
318 cd08234 threonine_DH_like L-th 57.9 35 0.00076 27.4 6.0 61 9-69 153-257 (334)
319 KOG0022 Alcohol dehydrogenase, 57.7 20 0.00044 30.1 4.5 66 7-72 184-297 (375)
320 KOG2730 Methylase [General fun 57.0 5.9 0.00013 31.5 1.2 26 24-49 117-142 (263)
321 KOG1501 Arginine N-methyltrans 55.6 22 0.00048 31.3 4.5 33 17-49 68-115 (636)
322 PF07293 DUF1450: Protein of u 54.8 33 0.00072 22.5 4.3 43 5-47 17-76 (78)
323 cd08236 sugar_DH NAD(P)-depend 53.5 67 0.0015 25.9 7.1 61 9-69 153-258 (343)
324 cd08241 QOR1 Quinone oxidoredu 52.4 58 0.0013 25.5 6.4 32 9-40 133-181 (323)
325 KOG1099 SAM-dependent methyltr 51.5 56 0.0012 26.3 5.8 59 3-68 103-162 (294)
326 PRK13669 hypothetical protein; 51.3 40 0.00088 22.1 4.3 41 6-46 18-75 (78)
327 KOG2651 rRNA adenine N-6-methy 51.2 42 0.00091 29.0 5.4 38 6-43 143-196 (476)
328 COG4301 Uncharacterized conser 51.1 97 0.0021 25.3 7.2 57 11-67 74-191 (321)
329 cd08232 idonate-5-DH L-idonate 50.8 51 0.0011 26.6 5.9 61 8-68 158-261 (339)
330 TIGR01202 bchC 2-desacetyl-2-h 50.7 36 0.00078 27.5 5.0 58 13-70 142-232 (308)
331 KOG3201 Uncharacterized conser 50.4 18 0.00039 27.6 2.8 19 50-68 121-139 (201)
332 PRK10083 putative oxidoreducta 50.3 59 0.0013 26.2 6.2 63 7-69 152-259 (339)
333 cd08266 Zn_ADH_like1 Alcohol d 50.2 72 0.0016 25.3 6.7 62 8-69 159-265 (342)
334 cd08279 Zn_ADH_class_III Class 49.9 63 0.0014 26.6 6.4 63 7-69 174-282 (363)
335 PLN02586 probable cinnamyl alc 49.5 87 0.0019 25.9 7.2 60 11-70 179-279 (360)
336 cd08298 CAD2 Cinnamyl alcohol 49.4 62 0.0013 25.9 6.2 61 9-69 161-256 (329)
337 cd05278 FDH_like Formaldehyde 48.9 55 0.0012 26.4 5.8 61 9-69 161-267 (347)
338 cd08278 benzyl_alcohol_DH Benz 48.4 64 0.0014 26.6 6.2 62 8-69 179-285 (365)
339 KOG1562 Spermidine synthase [A 48.3 52 0.0011 27.4 5.4 40 25-69 197-236 (337)
340 KOG1202 Animal-type fatty acid 48.0 29 0.00063 34.5 4.4 54 22-75 1208-1266(2376)
341 TIGR02819 fdhA_non_GSH formald 47.9 53 0.0011 27.8 5.7 64 8-71 178-301 (393)
342 KOG2920 Predicted methyltransf 47.7 15 0.00033 30.0 2.2 23 14-36 115-152 (282)
343 KOG1253 tRNA methyltransferase 47.1 29 0.00062 30.8 4.0 45 25-69 136-216 (525)
344 PRK14665 mnmA tRNA-specific 2- 44.2 1.7E+02 0.0037 24.8 8.1 26 86-112 155-180 (360)
345 KOG2352 Predicted spermine/spe 42.7 68 0.0015 28.3 5.5 51 25-75 321-422 (482)
346 COG4076 Predicted RNA methylas 42.2 26 0.00056 27.4 2.6 54 16-69 33-135 (252)
347 COG1250 FadB 3-hydroxyacyl-CoA 40.7 1.2E+02 0.0026 25.2 6.5 47 24-70 27-119 (307)
348 KOG2671 Putative RNA methylase 40.0 55 0.0012 27.9 4.4 29 9-37 202-244 (421)
349 PF02737 3HCDH_N: 3-hydroxyacy 40.0 1.4E+02 0.0031 22.3 6.5 22 24-45 23-44 (180)
350 cd08296 CAD_like Cinnamyl alco 40.0 1.1E+02 0.0024 24.7 6.3 62 8-69 156-259 (333)
351 TIGR03201 dearomat_had 6-hydro 38.5 88 0.0019 25.6 5.6 34 8-41 159-208 (349)
352 PRK13771 putative alcohol dehy 38.4 2E+02 0.0044 22.9 7.7 62 8-69 155-255 (334)
353 PRK07535 methyltetrahydrofolat 38.0 35 0.00076 27.4 3.0 59 13-73 35-101 (261)
354 PRK09424 pntA NAD(P) transhydr 37.7 65 0.0014 28.7 4.8 31 11-41 160-206 (509)
355 cd05279 Zn_ADH1 Liver alcohol 37.3 1.5E+02 0.0032 24.5 6.7 63 7-69 175-285 (365)
356 PF04260 DUF436: Protein of un 37.0 23 0.0005 26.7 1.6 54 3-69 6-67 (172)
357 PF09386 ParD: Antitoxin ParD; 35.3 63 0.0014 21.1 3.2 23 27-49 4-26 (79)
358 PRK07819 3-hydroxybutyryl-CoA 34.8 1.6E+02 0.0034 23.8 6.4 20 24-43 29-48 (286)
359 cd05286 QOR2 Quinone oxidoredu 34.4 1.3E+02 0.0028 23.3 5.8 32 9-40 130-178 (320)
360 cd08286 FDH_like_ADH2 formalde 34.4 1.6E+02 0.0034 23.8 6.4 62 8-69 159-266 (345)
361 cd08292 ETR_like_2 2-enoyl thi 34.0 2E+02 0.0044 22.7 6.9 61 8-68 132-237 (324)
362 PF03514 GRAS: GRAS domain fam 33.9 1E+02 0.0022 26.1 5.3 39 5-43 100-165 (374)
363 cd08301 alcohol_DH_plants Plan 33.8 1.3E+02 0.0027 24.8 5.8 65 7-71 179-291 (369)
364 PF10354 DUF2431: Domain of un 33.6 83 0.0018 23.4 4.2 19 50-68 106-124 (166)
365 PF01402 RHH_1: Ribbon-helix-h 32.9 75 0.0016 17.0 3.0 29 27-55 2-32 (39)
366 PRK10754 quinone oxidoreductas 32.7 1.3E+02 0.0028 24.0 5.6 32 9-40 134-182 (327)
367 KOG0328 Predicted ATP-dependen 32.5 52 0.0011 27.4 3.1 60 14-73 136-211 (400)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 32.1 1.2E+02 0.0026 22.9 5.0 18 24-41 24-41 (185)
369 cd08274 MDR9 Medium chain dehy 31.9 2.1E+02 0.0045 23.0 6.7 60 8-68 170-272 (350)
370 cd08231 MDR_TM0436_like Hypoth 31.6 1.6E+02 0.0035 24.0 6.0 61 9-69 170-280 (361)
371 cd08300 alcohol_DH_class_III c 31.6 1.4E+02 0.003 24.6 5.7 64 7-70 178-289 (368)
372 COG0500 SmtA SAM-dependent met 31.1 61 0.0013 21.3 3.0 54 19-72 52-158 (257)
373 PRK13690 hypothetical protein; 30.8 44 0.00095 25.5 2.3 57 3-69 13-74 (184)
374 cd08263 Zn_ADH10 Alcohol dehyd 30.7 1.7E+02 0.0037 24.0 6.1 60 10-69 182-287 (367)
375 PF03141 Methyltransf_29: Puta 30.3 43 0.00093 29.7 2.4 20 50-69 448-467 (506)
376 TIGR02441 fa_ox_alpha_mit fatt 30.2 1.8E+02 0.0038 27.2 6.5 46 25-70 360-451 (737)
377 cd08277 liver_alcohol_DH_like 29.8 1.5E+02 0.0033 24.3 5.7 64 8-71 177-288 (365)
378 PF14794 DUF4479: Domain of un 29.2 56 0.0012 21.0 2.3 21 29-49 46-66 (73)
379 TIGR01573 cas2 CRISPR-associat 29.1 1.8E+02 0.0039 19.4 5.4 48 26-73 4-73 (95)
380 cd08235 iditol_2_DH_like L-idi 29.0 2.1E+02 0.0046 22.9 6.3 61 8-68 158-264 (343)
381 PF06557 DUF1122: Protein of u 29.0 50 0.0011 24.9 2.3 21 50-70 67-87 (170)
382 PLN02494 adenosylhomocysteinas 28.7 2.1E+02 0.0045 25.4 6.3 66 4-69 241-341 (477)
383 cd08287 FDH_like_ADH3 formalde 28.6 2.6E+02 0.0056 22.4 6.8 62 9-70 162-269 (345)
384 COG4017 Uncharacterized protei 28.4 94 0.002 24.4 3.7 41 2-42 31-86 (254)
385 COG1831 Predicted metal-depend 27.9 1.6E+02 0.0036 24.0 5.2 15 85-99 233-247 (285)
386 TIGR01440 conserved hypothetic 27.8 48 0.001 25.0 2.0 57 3-69 6-67 (172)
387 COG3377 Uncharacterized conser 27.6 12 0.00027 25.2 -1.0 41 8-48 38-82 (95)
388 COG1255 Uncharacterized protei 27.6 58 0.0013 23.3 2.3 20 14-34 13-47 (129)
389 PF11253 DUF3052: Protein of u 27.5 45 0.00097 24.0 1.7 80 9-111 2-103 (127)
390 PF05430 Methyltransf_30: S-ad 27.3 36 0.00077 24.2 1.2 19 50-68 71-89 (124)
391 cd08251 polyketide_synthase po 27.3 1.9E+02 0.0042 22.3 5.6 32 9-40 114-162 (303)
392 PLN02178 cinnamyl-alcohol dehy 27.1 1.8E+02 0.0039 24.3 5.7 58 13-70 176-274 (375)
393 PRK05808 3-hydroxybutyryl-CoA 27.1 2.1E+02 0.0045 22.8 5.8 18 24-41 27-44 (282)
394 TIGR00936 ahcY adenosylhomocys 26.6 3.8E+02 0.0082 23.1 7.6 64 6-69 184-282 (406)
395 cd08291 ETR_like_1 2-enoyl thi 26.5 1.6E+02 0.0034 23.6 5.1 45 25-69 170-242 (324)
396 PRK07066 3-hydroxybutyryl-CoA 26.5 2.4E+02 0.0051 23.5 6.1 18 25-42 32-49 (321)
397 TIGR03595 Obg_CgtA_exten Obg f 26.2 70 0.0015 20.2 2.3 17 4-20 45-61 (69)
398 PLN02702 L-idonate 5-dehydroge 26.1 2.3E+02 0.005 23.2 6.1 32 9-40 175-223 (364)
399 PF14258 DUF4350: Domain of un 25.8 55 0.0012 20.2 1.8 17 52-68 53-69 (70)
400 cd05195 enoyl_red enoyl reduct 25.6 3E+02 0.0064 20.8 7.0 34 8-41 101-151 (293)
401 PF12449 DUF3684: Protein of u 25.1 1.6E+02 0.0035 28.8 5.4 62 50-135 195-256 (1093)
402 cd05282 ETR_like 2-enoyl thioe 25.1 2.3E+02 0.0049 22.3 5.7 31 10-40 133-180 (323)
403 TIGR00027 mthyl_TIGR00027 meth 24.8 3.6E+02 0.0078 21.5 8.1 22 50-71 178-199 (260)
404 COG0863 DNA modification methy 24.2 2.7E+02 0.0058 22.0 6.0 42 3-45 211-266 (302)
405 cd08244 MDR_enoyl_red Possible 24.2 3.6E+02 0.0077 21.2 7.0 34 7-40 134-184 (324)
406 PLN02514 cinnamyl-alcohol dehy 24.2 4E+02 0.0087 21.8 7.7 59 13-71 178-277 (357)
407 cd01091 CDC68-like Related to 24.0 2.7E+02 0.0059 21.9 5.9 25 16-40 92-126 (243)
408 smart00411 BHL bacterial (prok 23.9 1.2E+02 0.0026 19.5 3.3 23 50-72 27-49 (90)
409 PRK11154 fadJ multifunctional 23.9 2.7E+02 0.0058 25.8 6.5 45 25-69 335-425 (708)
410 COG1565 Uncharacterized conser 23.1 2.9E+02 0.0062 23.7 6.0 42 5-46 67-132 (370)
411 PF09269 DUF1967: Domain of un 23.0 65 0.0014 20.3 1.7 17 4-20 45-61 (69)
412 PF00216 Bac_DNA_binding: Bact 22.9 92 0.002 20.0 2.6 22 50-71 27-48 (90)
413 KOG0025 Zn2+-binding dehydroge 22.9 4.1E+02 0.0089 22.3 6.7 66 4-69 149-263 (354)
414 cd08297 CAD3 Cinnamyl alcohol 22.8 3E+02 0.0066 22.0 6.1 61 9-69 159-265 (341)
415 cd01087 Prolidase Prolidase. E 22.5 3.5E+02 0.0076 20.8 6.2 29 13-41 70-111 (243)
416 cd00990 PDZ_glycyl_aminopeptid 22.2 90 0.0019 19.3 2.3 17 8-24 25-41 (80)
417 cd05288 PGDH Prostaglandin deh 22.0 4E+02 0.0087 21.0 7.2 60 9-68 139-243 (329)
418 cd08240 6_hydroxyhexanoate_dh_ 21.9 3.9E+02 0.0084 21.5 6.6 57 13-69 173-274 (350)
419 KOG1098 Putative SAM-dependent 21.9 50 0.0011 30.3 1.3 21 13-33 42-79 (780)
420 COG1448 TyrB Aspartate/tyrosin 21.8 1.5E+02 0.0033 25.5 4.1 44 5-48 160-206 (396)
421 cd08269 Zn_ADH9 Alcohol dehydr 21.6 4E+02 0.0086 20.8 8.1 62 8-69 122-229 (312)
422 cd08256 Zn_ADH2 Alcohol dehydr 21.3 3.4E+02 0.0075 21.9 6.2 32 9-40 168-216 (350)
423 PF01726 LexA_DNA_bind: LexA D 21.2 37 0.00079 21.2 0.3 25 83-107 11-35 (65)
424 PRK10664 transcriptional regul 21.1 1.4E+02 0.0029 19.8 3.1 22 50-71 27-48 (90)
425 cd00991 PDZ_archaeal_metallopr 20.8 1E+02 0.0022 19.4 2.4 17 8-24 23-39 (79)
426 cd08238 sorbose_phosphate_red 20.6 2E+02 0.0044 24.2 4.8 34 9-42 169-222 (410)
427 TIGR00987 himA integration hos 20.6 1.4E+02 0.003 19.8 3.1 22 50-71 28-49 (96)
428 PF11899 DUF3419: Protein of u 20.5 1.1E+02 0.0023 26.2 3.1 24 50-73 315-338 (380)
429 cd00591 HU_IHF Integration hos 20.5 1.7E+02 0.0037 18.6 3.5 23 50-72 26-48 (87)
430 PRK05716 methionine aminopepti 20.3 2E+02 0.0043 22.3 4.4 16 50-65 146-161 (252)
431 PRK11730 fadB multifunctional 20.1 3.5E+02 0.0076 25.1 6.5 45 25-69 338-428 (715)
432 PRK09260 3-hydroxybutyryl-CoA 20.1 4.5E+02 0.0099 20.9 7.6 19 24-42 25-43 (288)
433 TIGR02437 FadB fatty oxidation 20.0 3.4E+02 0.0074 25.2 6.4 45 25-69 338-428 (714)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-34 Score=231.46 Aligned_cols=149 Identities=34% Similarity=0.652 Sum_probs=135.6
Q ss_pred hHHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 2 RKVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+|++.++++++++||++|||||| +|+|||+|++|.+.+++++++.|++
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 69999999999999999999999 9999999999999999999998876
Q ss_pred ------------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcC
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g 111 (171)
.||+.++++|+|||++++|+|+.+++.+. ...+|+.+||||||.+|+++++.+..++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhcC
Confidence 89999999999999999999999876532 567899999999999999999999988888
Q ss_pred Ccc--------------------------hhhhcCCCHHHHHHHHHHHHHHHHHhhcCCccEEEEEEEe
Q 042963 112 RLC--------------------------EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSR 154 (171)
Q Consensus 112 ~~~--------------------------~i~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~~~~~~k 154 (171)
+.+ ++... +++++.|+|.+||.+|+.+|+.|.++++|++++|
T Consensus 216 ~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 216 FVVLDVESLRPHYARTLRLWRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred cEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 543 22233 8999999999999999999999999999999976
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2e-34 Score=232.39 Aligned_cols=148 Identities=41% Similarity=0.740 Sum_probs=122.5
Q ss_pred hHHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 2 RKVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+|++.++++++++||+||||||| +|||||+|++|.++|++++++.|++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 79999999999999999999997 9999999999999999999998865
Q ss_pred ------------------HHHHHHHhccccCcEEEEEcccCCCcccccccC-ccchhhhcccCCCcCCCHHHHHHHHHhc
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRL-SPGFMKEYVFPGGCLPSLNRITSTMTSS 110 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~-~~~~~~~~ifp~~~lp~~~~l~~~~~~~ 110 (171)
.+|+++.++|||||++++++++.....+..... ..+|+.+||||||.+|+++++...+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~ 208 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA 208 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC
Confidence 889999999999999999999988765433222 3489999999999999999999988888
Q ss_pred CCcc--------------------------hhhhcCCCHHHHHHHHHHHHHHHHHhhcCCccEEEE
Q 042963 111 SRLC--------------------------EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEV 150 (171)
Q Consensus 111 g~~~--------------------------~i~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~~~ 150 (171)
++.+ ++.+. |++.++|+|++||.+|+++|+.|.++++||
T Consensus 209 ~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 209 GLEVEDVENLGRHYARTLRAWRENFDANREEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp T-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 8532 34455 999999999999999999999999999997
No 3
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.96 E-value=2.7e-28 Score=205.17 Aligned_cols=149 Identities=29% Similarity=0.560 Sum_probs=127.2
Q ss_pred hHHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 2 RKVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+|++.+++++++++|++|||||| +|+|||+|++|++.|+++++..++.
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 68999999999999999999997 8999999999999999987432211
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcCCcc-
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSSRLC- 114 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g~~~- 114 (171)
.+++++.++|||||++++++++..... .....|+.+|+||++.+|+++++.+..+. ++.+
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~~-~~~v~ 308 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASEG-LFVME 308 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHHC-CcEEE
Confidence 678999999999999999988765421 24567999999999999999999888764 5422
Q ss_pred -------------------------hhhhcCCCHHHHHHHHHHHHHHHHHhhcCCccEEEEEEEeCC
Q 042963 115 -------------------------EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSRPG 156 (171)
Q Consensus 115 -------------------------~i~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~~~~~~k~~ 156 (171)
++. .+|+++|.|+|++||.+|+++|+.|.++++|++++|++
T Consensus 309 d~~~~~~hy~~TL~~W~~~f~~~~~~~~-~~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~~ 374 (383)
T PRK11705 309 DWHNFGADYDRTLMAWHENFEAAWPELA-DNYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPRG 374 (383)
T ss_pred EEecChhhHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCC
Confidence 233 36999999999999999999999999999999999976
No 4
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.72 E-value=1.7e-16 Score=124.03 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=99.4
Q ss_pred CeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------------------
Q 042963 17 HDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------- 49 (171)
Q Consensus 17 ~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------- 49 (171)
.+|||||| +|+|+|+|++|++.|+++++..|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 47999997 7999999999999999988664432
Q ss_pred ----HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcCCcc-----------
Q 042963 50 ----QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSSRLC----------- 114 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g~~~----------- 114 (171)
.++++++++|||||+++++++..... . ....++.. .++++..++.+.++++|+-.
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--~~~~~~~~------~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~ 150 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLL--S--AIEHEETT------SYLVTREEWAELLARNNLRVVEGVDASLEIA 150 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccC--c--cccccccc------cccCCHHHHHHHHHHCCCeEEEeEECcHhHh
Confidence 67899999999999999987643211 0 01112221 24688899999998888522
Q ss_pred -------------hhhhcCCCHHHHHHHHHHHHHHHHHhhcCCccEEEEEEEeCCC
Q 042963 115 -------------EILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGN 157 (171)
Q Consensus 115 -------------~i~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~~~~~~k~~~ 157 (171)
.+...++++.+.|+|++|+.+|++ |+.|.++..|++++|+..
T Consensus 151 ~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 205 (224)
T smart00828 151 NFLYDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEF 205 (224)
T ss_pred hhccChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEecccc
Confidence 122225777899999999998887 999999999999999754
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=1.5e-14 Score=120.21 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=102.7
Q ss_pred hHHHHHHHHcCC-----CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH------------
Q 042963 2 RKVSFLIEKARV-----SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ------------ 49 (171)
Q Consensus 2 ~k~~~ll~~l~l-----~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~------------ 49 (171)
++++.+++.+++ +++.+|||||| +|+|||+|++|++.|+++++..++.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 467889999998 88999999998 8999999999999999988765542
Q ss_pred ------------------------HHHHHHHhccccCcEEEEEcccCCCccccc--ccCcc-ch----hhhcccCCCcCC
Q 042963 50 ------------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE--HRLSP-GF----MKEYVFPGGCLP 98 (171)
Q Consensus 50 ------------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~--~~~~~-~~----~~~~ifp~~~lp 98 (171)
.++++++++|||||++++.+++........ ..... .. ...+.+| .+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p--~~~ 257 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLP--AWC 257 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCC--CCC
Confidence 689999999999999999887664321100 00000 11 1122233 234
Q ss_pred CHHHHHHHHHhcCCcchhhhcCCCHHHHHHHHHH------------------------H--HHHHHHhhcCCccEEEEEE
Q 042963 99 SLNRITSTMTSSSRLCEILDLGFSEKFLRTWEYY------------------------F--DYCAAGFKSRTLRNYEVVF 152 (171)
Q Consensus 99 ~~~~l~~~~~~~g~~~~i~~~~~~~~~~r~w~~y------------------------l--~~~~~~f~~~~~~~~~~~~ 152 (171)
+..++.+.++++| |..+...+|++.....|... + .....+|+.|-+...-+++
T Consensus 258 s~~~~~~~l~~aG-f~~v~~~d~s~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~ 336 (340)
T PLN02244 258 STSDYVKLAESLG-LQDIKTEDWSEHVAPFWPAVIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKFAVITC 336 (340)
T ss_pred CHHHHHHHHHHCC-CCeeEeeeCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEE
Confidence 7899999999998 44333334554444444421 1 1234557777777777777
Q ss_pred EeC
Q 042963 153 SRP 155 (171)
Q Consensus 153 ~k~ 155 (171)
+||
T Consensus 337 ~kp 339 (340)
T PLN02244 337 RKP 339 (340)
T ss_pred eCC
Confidence 776
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=8.7e-14 Score=110.04 Aligned_cols=71 Identities=28% Similarity=0.341 Sum_probs=61.7
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+.+++.+++++|++|||||| +|||+|+|+.|++.|++++.+.+..
T Consensus 41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 45677888899999999997 9999999999999999999875421
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcccCCCc
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFSSVPDQ 75 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i~~~~~ 75 (171)
..++|++|+|||||++++.++..+..
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 88999999999999999988776543
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.45 E-value=1.1e-13 Score=109.42 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=54.2
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
.+++.+++++|++|||+|| +|+|+|+|++|++.|+++++..+..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 4566778999999999998 8999999999999999998876432
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcccCCCc
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFSSVPDQ 75 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i~~~~~ 75 (171)
..+++++|+|||||++++.+++.+..
T Consensus 118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 78999999999999999988877654
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=2e-13 Score=107.10 Aligned_cols=132 Identities=20% Similarity=0.325 Sum_probs=89.3
Q ss_pred CCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------------
Q 042963 14 SKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------ 49 (171)
Q Consensus 14 ~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------ 49 (171)
-+|.+|||||| +|||||+|+++++.|+.++.+.|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 58999999999 9999999999999999999887764
Q ss_pred ----HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCC----cCCCHHHHHHHHHhcCC-cchhhhcC
Q 042963 50 ----QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGG----CLPSLNRITSTMTSSSR-LCEILDLG 120 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~----~lp~~~~l~~~~~~~g~-~~~i~~~~ 120 (171)
.+++.|.+.+||||.+++.+|..+...+.......+++-+.++.|. .+-.++|+...+..+++ ........
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence 7889999999999999999999876554332233445545333332 25567777776666542 22344333
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccEEEEEEEeC
Q 042963 121 FSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSRP 155 (171)
Q Consensus 121 ~~~~~~r~w~~yl~~~~~~f~~~~~~~~~~~~~k~ 155 (171)
|. ++...|. |+...-.+|.+..+|+
T Consensus 218 y~-p~~~~~~---------l~~~~~vNy~~~~~~~ 242 (243)
T COG2227 218 YN-PLTNSWK---------LSNDVSVNYMVHAQRP 242 (243)
T ss_pred ec-cccceEE---------ecCCccceEEEEeecC
Confidence 33 3333333 3334445666666654
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.44 E-value=2.3e-12 Score=103.68 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhc-hH-----------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAG-LQ----------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~g-l~----------------- 49 (171)
-.+.+++.++++++.+|||||| +|+|+|+|++|++.|+++..... +.
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 4678899999999999999997 89999999999999998754211 10
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhccc-CCCcCCCHHHHHHHHHhcC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVF-PGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~if-p~~~lp~~~~l~~~~~~~g 111 (171)
.++++++++|||||++++.+++..... ...+....++- ....+++++++.+.++++|
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 194 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE-----NWDEEFKAYIKKRKYTLIPIQEYGDLIKSCN 194 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc-----CcHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 578899999999999999887654321 01111111111 1224678999999999999
Q ss_pred C
Q 042963 112 R 112 (171)
Q Consensus 112 ~ 112 (171)
|
T Consensus 195 F 195 (263)
T PTZ00098 195 F 195 (263)
T ss_pred C
Confidence 5
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=1e-11 Score=107.30 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=78.1
Q ss_pred HHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch--H-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL--Q----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl--~----------------- 49 (171)
.+.+++.+.++++.+|||||| +|+|+|+|++|++.|++++...+. .
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 456888899999999999997 899999999999999987643221 1
Q ss_pred ---------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcc-cCCCcCCCHHHHHHHHHhcCC
Q 042963 50 ---------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYV-FPGGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 ---------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~i-fp~~~lp~~~~l~~~~~~~g~ 112 (171)
.++++++++|||||++++.+++..... ..+....++ ..+..+++..++.+.++++||
T Consensus 335 ~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 335 VIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGT------PSPEFAEYIKQRGYDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred EEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCC------CcHHHHHHHHhcCCCCCCHHHHHHHHHHCCC
Confidence 789999999999999999887654321 111112222 223468899999999999985
No 11
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=103.42 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------------
Q 042963 16 GHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------------- 49 (171)
Q Consensus 16 g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------------- 49 (171)
|++|||||| +|+|||+|+.|++.|+++.+.....
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 489999999 9999999999999999994322111
Q ss_pred ------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCc----CCCHHHHHHHHHhcCC
Q 042963 50 ------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGC----LPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~----lp~~~~l~~~~~~~g~ 112 (171)
.+.+.+.+.|||||+++|.+|..+...|.......+.+.+.+.+|++ ++++.++..+++.++.
T Consensus 170 HV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 170 HVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 77889999999999999999998866554433455666665666654 7899999999998864
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.35 E-value=5e-12 Score=104.43 Aligned_cols=110 Identities=11% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhch----H-------------------------
Q 042963 13 VSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGL----Q------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl----~------------------------- 49 (171)
..+|.+|||||| +|+|||+|++|++.|++++...+. .
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 457889999998 899999999999999987643221 0
Q ss_pred -------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCC----cCCCHHHHHHHHHhcCCcc-hhh
Q 042963 50 -------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGG----CLPSLNRITSTMTSSSRLC-EIL 117 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~----~lp~~~~l~~~~~~~g~~~-~i~ 117 (171)
.++++++++|||||.+++.++......+.......+++.+++.+++ .+.+++++...++++|+-. ++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 7889999999999999999876653222111112234444444443 3678999999999998422 344
Q ss_pred hcCCC
Q 042963 118 DLGFS 122 (171)
Q Consensus 118 ~~~~~ 122 (171)
...|+
T Consensus 289 G~~~~ 293 (322)
T PLN02396 289 GFVYN 293 (322)
T ss_pred eeEEc
Confidence 44344
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.34 E-value=6.3e-12 Score=100.97 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh------chH---------------
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA------GLQ--------------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~------gl~--------------- 49 (171)
++.++++++++|||||| +|+|||+|++|++.|+++.... ++.
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 45678899999999997 6999999999999998775310 111
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
.++++++|+|||||++++.++..+.
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 7899999999999999998887654
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.30 E-value=1.4e-11 Score=96.57 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=57.6
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------ 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------ 49 (171)
+.+++.+++++|++|||||| +|+|+|+|++|++.|+++.+..++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 56788899999999999998 7999999999999999987654322
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++++.++|+|||++++.+.+.
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 67889999999999998866443
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=7.1e-11 Score=94.33 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
.++.+++.+. .++.+|||||| +|+|+|+|++|++.|+++++..|+.
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4567788887 56789999998 8999999999999999988765431
Q ss_pred ------------------HHHHHHHhccccCcEEEEEcccCCCccccc-ccCccchhh--------hcccCCCcCCCHHH
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE-HRLSPGFMK--------EYVFPGGCLPSLNR 102 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~-~~~~~~~~~--------~~ifp~~~lp~~~~ 102 (171)
.+++++.++|||||++++..++.....+.. .....+... ....|. ...++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~ 190 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YPLDPEQ 190 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CCCCHHH
Confidence 678899999999999998655433210000 000000110 111221 2346899
Q ss_pred HHHHHHhcCC
Q 042963 103 ITSTMTSSSR 112 (171)
Q Consensus 103 l~~~~~~~g~ 112 (171)
+.+.++++|+
T Consensus 191 l~~~l~~aGf 200 (255)
T PRK11036 191 VYQWLEEAGW 200 (255)
T ss_pred HHHHHHHCCC
Confidence 9999999985
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=8.2e-11 Score=96.88 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHh-----------chH-------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEA-----------GLQ------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~-----------gl~------- 49 (171)
|.++++..++..+|.+|||||| .|+|||+|+.|+..++...+.. +++
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 6778999999999999999998 6999999999987654321110 111
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhh-hcccCCCcCCCHHHHHHHHHhcC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMK-EYVFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~-~~ifp~~~lp~~~~l~~~~~~~g 111 (171)
.++++++++|||||.+++.++...............+.+ +.+ -.+|+..++...++++|
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv---~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV---YFIPSVSALKNWLEKVG 265 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc---ccCCCHHHHHHHHHHCC
Confidence 789999999999999999875433211000000011110 111 14789999999999998
Q ss_pred C
Q 042963 112 R 112 (171)
Q Consensus 112 ~ 112 (171)
|
T Consensus 266 F 266 (314)
T TIGR00452 266 F 266 (314)
T ss_pred C
Confidence 5
No 17
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.24 E-value=4.1e-11 Score=94.81 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=71.1
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------------eEEEEcCCHHHHHHHHHHHHHhchH-------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------------DYTGITLSEEQLKYTEMKVKEAGLQ------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------------~VtgId~S~~~~~~A~~~~~~~gl~------------- 49 (171)
+....+|+..+|++|||++| +||.+|+|++|++.+++++++.++.
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 45678899999999999996 8999999999999999999776654
Q ss_pred -------------------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHH
Q 042963 50 -------------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRIT 104 (171)
Q Consensus 50 -------------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~ 104 (171)
+.+++++|+|||||++++-........ ....++..|.|. .+|.+.++.
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~-----~l~~fy~~ysf~--VlpvlG~~i 242 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENE-----PLKWFYDQYSFD--VLPVLGEII 242 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccH-----HHHHHHHhhhhh--hhchhhHhh
Confidence 789999999999999997655443311 112344444443 255555554
Q ss_pred HHHHh
Q 042963 105 STMTS 109 (171)
Q Consensus 105 ~~~~~ 109 (171)
.-..+
T Consensus 243 agd~~ 247 (296)
T KOG1540|consen 243 AGDRK 247 (296)
T ss_pred hhhHh
Confidence 43333
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.18 E-value=5.4e-11 Score=92.77 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=73.1
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
++.+++.+++++|++|||||| +|+|||+++++++.|++++++.++.
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 578889999999999999997 3999999999999999998877653
Q ss_pred ------------HHHHHHHhccccCcEEEEEcccCCCccccc-ccCccchhhhcccCCCcCCCH
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE-HRLSPGFMKEYVFPGGCLPSL 100 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~-~~~~~~~~~~~ifp~~~lp~~ 100 (171)
.+.+.+.+.|||||++++.... ....... .+....|..+.+++..++|..
T Consensus 146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 208 (215)
T TIGR00080 146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPLV 208 (215)
T ss_pred CCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeCC
Confidence 5667889999999999875432 2221111 133455777778887777753
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.17 E-value=1.8e-10 Score=91.84 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch--------------H---
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL--------------Q--- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl--------------~--- 49 (171)
..+.+++.+.++++.+|||||| +|+|||+|+.|++.|+++.....+ +
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 3567889999999999999998 799999999999999987532111 0
Q ss_pred ------------HHHHHHHhccccCcEEEEEcccCCC-cccc---cccCccchhhhcccCC---CcCCCHHHHHHHHHhc
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSSVPD-QCYD---EHRLSPGFMKEYVFPG---GCLPSLNRITSTMTSS 110 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~~~~-~~~~---~~~~~~~~~~~~ifp~---~~lp~~~~l~~~~~~~ 110 (171)
.++++++++|||||.++++...... +... ......+|...+..++ ..+|+..++.+.+.++
T Consensus 99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (258)
T PRK01683 99 ANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPA 178 (258)
T ss_pred EccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhC
Confidence 7899999999999999986422111 0000 0011223444332222 3568888998888888
Q ss_pred CCcc
Q 042963 111 SRLC 114 (171)
Q Consensus 111 g~~~ 114 (171)
|+.+
T Consensus 179 g~~v 182 (258)
T PRK01683 179 ACRV 182 (258)
T ss_pred CCce
Confidence 7533
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.16 E-value=2.8e-10 Score=90.86 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHH---hc---------hH-----
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKE---AG---------LQ----- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~---~g---------l~----- 49 (171)
.+..+++.+++.++.+|||||| +|+|+|+|+.|++.|+++... .. ++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence 4577899999999999999998 799999999999999764100 00 00
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCCCccccc----ccCccchhhh---ccc-CCCcCCCHHHHHHHHHhcC
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE----HRLSPGFMKE---YVF-PGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~----~~~~~~~~~~---~if-p~~~lp~~~~l~~~~~~~g 111 (171)
.++++++++|||||++++............ ......|... .-+ .+..+.+..++.+.++++|
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 176 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG 176 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCC
Confidence 678999999999999998643321111000 0001122211 001 1234678999999999999
Q ss_pred C
Q 042963 112 R 112 (171)
Q Consensus 112 ~ 112 (171)
+
T Consensus 177 f 177 (255)
T PRK14103 177 C 177 (255)
T ss_pred C
Confidence 6
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=5.1e-10 Score=92.56 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHh----ch-------H-------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEA----GL-------Q------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~----gl-------~------- 49 (171)
|.+.++..++..+|.+|||||| .|+|||+|+.|+..++...+.. ++ +
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 6678888888778999999998 6999999999987655432211 11 1
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcc-cCC-CcCCCHHHHHHHHHhc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYV-FPG-GCLPSLNRITSTMTSS 110 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~i-fp~-~~lp~~~~l~~~~~~~ 110 (171)
.++++++++|+|||++++.++.......... ... .+|. +++ -++|+..++...++++
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l-~p~---~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVL-VPG---DRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCcccc-Cch---hHHhcCccceeCCCHHHHHHHHHHc
Confidence 7899999999999999998754432110000 000 1110 111 2478999999999999
Q ss_pred CC
Q 042963 111 SR 112 (171)
Q Consensus 111 g~ 112 (171)
||
T Consensus 266 GF 267 (322)
T PRK15068 266 GF 267 (322)
T ss_pred CC
Confidence 95
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=3e-10 Score=91.40 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
..+++++|++|||||| +|+|+|+|++|++.|+++.+..++.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEE
Confidence 3467899999999997 6999999999999999987655431
Q ss_pred -------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhh-cccC--CCcCCCHHHHHHHHHhcCC
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKE-YVFP--GGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~-~ifp--~~~lp~~~~l~~~~~~~g~ 112 (171)
.++++++++|||||++++.++....... ..+... .++. .+...+..++.+.++++|+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP------EEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC------HHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 6799999999999999998765533210 011110 0111 1234568899999999885
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.14 E-value=3.8e-10 Score=79.47 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
..+.+++.+.+.++++|||||| +|+|+|+|+.+++.|+++++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3456888999999999999997 7999999999999999887655432
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcc
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++.+++.|||||++++..+
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 578999999999999988654
No 24
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.14 E-value=5.8e-10 Score=91.31 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+.+++.++++++.+|||||| +++++|+ +++++.|++++++.|+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence 55778889999999999997 8999998 78999999998876653
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCC------cCCCHHHHHHH
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGG------CLPSLNRITST 106 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~------~lp~~~~l~~~ 106 (171)
.++++++++|||||++++.++...+... ....++..++.+.+ ..+...++.+.
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN----PNFDYLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----chhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence 5789999999999999999875543221 11122233322222 12346778888
Q ss_pred HHhcCC
Q 042963 107 MTSSSR 112 (171)
Q Consensus 107 ~~~~g~ 112 (171)
++++||
T Consensus 294 l~~aGf 299 (306)
T TIGR02716 294 LESLGY 299 (306)
T ss_pred HHHcCC
Confidence 888873
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.11 E-value=2.2e-10 Score=79.64 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=46.5
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
||.+|||||| +|+|||+|+++++.|++++.+.+..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 7899999998 9999999999999999998544322
Q ss_pred -----------HHHHHHHhccccCcEEEEEc
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+++.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34788999999999998863
No 26
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=2.7e-10 Score=88.31 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
++.+++.+++++|++|||||| +|+|+|+|+++++.|+++++..++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 577889999999999999997 7999999999999999988765531
Q ss_pred -------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+.+++.++|+|||++++..
T Consensus 141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence 56688999999999998743
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.10 E-value=1.3e-09 Score=90.58 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHcCC-CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH------------------
Q 042963 5 SFLIEKARV-SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------ 49 (171)
Q Consensus 5 ~~ll~~l~l-~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------ 49 (171)
+.+++.+.+ +++++|||||| +|+|+|+|++|++.|+++....++.
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence 446677776 57899999997 7999999999999999875422221
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccC-CCcCCCHHHHHHHHHhcCCcc
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFP-GGCLPSLNRITSTMTSSSRLC 114 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp-~~~lp~~~~l~~~~~~~g~~~ 114 (171)
..+++++++|||||++++.....+. .|..++.-. ...+|+.+++.+.++++| |.
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~----------~~~~r~~~~~~~~~~t~eEl~~lL~~aG-F~ 250 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT----------FWLSRFFADVWMLFPKEEEYIEWFTKAG-FK 250 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc----------hhHHHHhhhhhccCCCHHHHHHHHHHCC-Ce
Confidence 6789999999999999875432221 111111000 013578999999999998 44
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHhh-cCCccEEEEEEEeCCC
Q 042963 115 EILDLGFSEKFLRTWEYYFDYCAAGFK-SRTLRNYEVVFSRPGN 157 (171)
Q Consensus 115 ~i~~~~~~~~~~r~w~~yl~~~~~~f~-~~~~~~~~~~~~k~~~ 157 (171)
.+.-......+++ +.+ .+.+-.+.++++|+.+
T Consensus 251 ~V~i~~i~~~~~~-----------~~~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 251 DVKLKRIGPKWYR-----------GVRRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred EEEEEEcChhhcc-----------ccccccceeeEEEEEecccc
Confidence 3322222322211 222 3444556788998866
No 28
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=2.7e-10 Score=88.83 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------- 49 (171)
-++.+++.+++++|++|||||| +|+|+|+++++++.|+++++..++.
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 3578899999999999999996 8999999999999999998766542
Q ss_pred -------------HHHHHHHhccccCcEEEEE
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+.+.+.++|||||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence 5567889999999999874
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.08 E-value=5.9e-10 Score=85.94 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=54.3
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
.+++.+.+.++.+|||+|| +|+|+|+|++|++.|+++++..++.
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEE
Confidence 5677788888999999998 8999999999999999987765432
Q ss_pred --------------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.++++++++|||||++++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 67889999999999976543
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.08 E-value=1.8e-09 Score=85.95 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------------
Q 042963 13 VSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------- 49 (171)
++++.+|||||| +|+|||+|++|++.|+++++..+..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 578999999998 7999999999999999998654321
Q ss_pred -----------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.++++++++|||||.+++.+...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 57899999999999999987543
No 31
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3e-10 Score=87.97 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
.+.++++.|.+++|++|||||| +|++||+.++..+.|+++.+..|+.
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 4678999999999999999997 9999999999999999999988873
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCCCcccccc-cCc-cchhhhcccCCCcCCCH
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEH-RLS-PGFMKEYVFPGGCLPSL 100 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~-~~~-~~~~~~~ifp~~~lp~~ 100 (171)
...+.+.++|||||++++-.-.......... +.. ..+.++.+|+..+.|-.
T Consensus 140 D~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~ 202 (209)
T COG2518 140 DRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLV 202 (209)
T ss_pred CEEEEeeccCCCCHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecC
Confidence 5678899999999999874321222221111 222 24555566665555543
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.07 E-value=7.9e-10 Score=85.11 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=67.0
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH---------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ--------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~--------------------- 49 (171)
..+++.+.+.++.+|||||| +|+|+|+|++|++.++++++..++.
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEE
Confidence 35667788878889999998 8999999999999999887665432
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHh
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTS 109 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~ 109 (171)
.++++++++|||||++++........ +. .. .|..+..+.+++.+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~~ 161 (195)
T TIGR00477 100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYAD 161 (195)
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhCC
Confidence 67889999999999976654332211 10 00 112245678888887753
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.01 E-value=1.8e-09 Score=85.27 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhch----H---------------------
Q 042963 13 VSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAGL----Q--------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~gl----~--------------------- 49 (171)
+.++.+|||||| +|+|+|+|++|++.|+++++..+. .
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 468899999998 599999999999999998765321 1
Q ss_pred -----------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.++++++++|||||++++.+...
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 57899999999999999987544
No 34
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=2.5e-09 Score=82.14 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
.+++.++++++++|||+|| +|+|||+|+++++.|++++++.++.
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 4678899999999999997 8999999999999999988765432
Q ss_pred ------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++++.++|+|||++++..
T Consensus 111 d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 111 DRVCIEGGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 45666677777777776654
No 35
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.98 E-value=1.4e-09 Score=84.84 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------- 49 (171)
.+.++++.|+++||++|||||| +|++||+.++.++.|+++.+..++.
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 4678999999999999999996 6999999999999999999887764
Q ss_pred -------------HHHHHHHhccccCcEEEEEcccCCCccccc-ccCc-cchhhhcccCCCcCC
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE-HRLS-PGFMKEYVFPGGCLP 98 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~-~~~~-~~~~~~~ifp~~~lp 98 (171)
.....+.++|||||++++-.-......... .+.. ..|..+.+++..+.|
T Consensus 140 apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvp 203 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVP 203 (209)
T ss_dssp -SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B
T ss_pred CCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEe
Confidence 667889999999999987432221111111 1222 345556666655555
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.96 E-value=4e-09 Score=80.41 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=53.2
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
.+++.+++.++.+|||||| +|+|+|+|+++++.|+++++..++.
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 4567889999999999997 8999999999999999987655432
Q ss_pred ----------HHHHHHHhccccCcEEEEEc
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+.++|+|||++++..
T Consensus 102 ~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 56778888888888887753
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.95 E-value=3.7e-09 Score=81.09 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------- 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------- 49 (171)
.++++.+|||||| +|+|||+|++|++.|++++++.+++
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~ 121 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV 121 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc
Confidence 4566999999998 8999999999999999998877653
Q ss_pred ----HHHHHHHhccccCcEEEEE
Q 042963 50 ----QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.++++|||||++++.
T Consensus 122 ~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 122 ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEE
Confidence 6788899999999999875
No 38
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.93 E-value=2.7e-09 Score=82.84 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
..++++.+.++++++|||||| +|+++|+++++++.|++++++.++.
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcC
Confidence 357788899999999999998 7999999999999999988765432
Q ss_pred ---------HHHHHHHhccccCcEEEEEcccCCCcccccc-cCccchhhhcccCCCcCCCH
Q 042963 50 ---------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEH-RLSPGFMKEYVFPGGCLPSL 100 (171)
Q Consensus 50 ---------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~-~~~~~~~~~~ifp~~~lp~~ 100 (171)
.+.+.+.+.|+|||++++............. +....+..+.+|+.++.|..
T Consensus 147 ~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 207 (212)
T PRK00312 147 RILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRKRGGRFEREVLEEVRFVPLV 207 (212)
T ss_pred EEEEccCchhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEEcCCeEEEEEEccEEEEecC
Confidence 4567889999999999886431111111111 12233555556666655544
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.92 E-value=7.2e-09 Score=78.86 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=60.6
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
..+.+|.++||++++|||| +|++||-+++.++..++++++.|++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 4678999999999999996 9999999999999999999998865
Q ss_pred -----------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++.+...|||||++++..++.
T Consensus 105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 78899999999999999877654
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=9.2e-09 Score=80.74 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+++.+.+.+...++.+|||||| +|+|+|+|+++++.|+++....+..
T Consensus 36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence 4566677777789999999997 8999999999999999876543221
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhccc----CCCcCCCHHHHHHHHHh
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVF----PGGCLPSLNRITSTMTS 109 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~if----p~~~lp~~~~l~~~~~~ 109 (171)
.+++.+.++|+|||++++..+......+.......+++..... ....+++..++.+.+.+
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence 5678999999999999987654321110000000011111110 11245678899999999
Q ss_pred cCCcc-hhhhcCCCHHHHHHHHH
Q 042963 110 SSRLC-EILDLGFSEKFLRTWEY 131 (171)
Q Consensus 110 ~g~~~-~i~~~~~~~~~~r~w~~ 131 (171)
+|+-. ...+..|+ ++.+.|.+
T Consensus 196 ~Gf~~v~~~~~~~~-~~~~~~~~ 217 (233)
T PRK05134 196 AGLEVQDITGLHYN-PLTNRWKL 217 (233)
T ss_pred CCCeEeeeeeEEec-hhhcceee
Confidence 98422 23333333 55555654
No 41
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.92 E-value=2.7e-09 Score=78.25 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHHHHcC--CCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH------------HhchH-----
Q 042963 3 KVSFLIEKAR--VSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK------------EAGLQ----- 49 (171)
Q Consensus 3 k~~~ll~~l~--l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~------------~~gl~----- 49 (171)
.+..+++++. .+++.+|||||| +|+|+|+|+.+++. .+.. ...++
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICN 85 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhH
Confidence 3455555554 799999999998 99999999999987 1000 00111
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhccc---CCCcCCCHHHHHHHHHhcCC
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVF---PGGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~if---p~~~lp~~~~l~~~~~~~g~ 112 (171)
.++++++++|||||.+++.+......... ....| .+.. .....-+.+++.+.++++|+
T Consensus 86 ~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 86 DVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPR---SFLKW--RYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHH---HHHHC--CGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred HHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhh---HHHhc--CCcCccCceeccCCHHHHHHHHHHCCC
Confidence 88999999999999999988765321100 00011 1111 12245689999999999983
No 42
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.89 E-value=2.2e-08 Score=81.51 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHH---HHHHHHHh--------chH-------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKY---TEMKVKEA--------GLQ------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~---A~~~~~~~--------gl~------- 49 (171)
|.+++...+.--.|.+|||||| .|+|||.+....-. +++.+... |++
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 7889999997778999999999 79999999876544 34333111 222
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchh-hhcccCCCcCCCHHHHHHHHHhcC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFM-KEYVFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~-~~~ifp~~~lp~~~~l~~~~~~~g 111 (171)
..++++++.|+|||.+++.+.......-...-....+. .+.++ ++||+..+...++++|
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~---FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW---FIPSVAALKNWLERAG 259 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE---EeCCHHHHHHHHHHcC
Confidence 67899999999999999988765432100000000111 11122 6899999999999999
Q ss_pred C
Q 042963 112 R 112 (171)
Q Consensus 112 ~ 112 (171)
|
T Consensus 260 F 260 (315)
T PF08003_consen 260 F 260 (315)
T ss_pred C
Confidence 5
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.88 E-value=5.1e-09 Score=83.22 Aligned_cols=104 Identities=12% Similarity=0.006 Sum_probs=69.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhc-----hH---------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAG-----LQ--------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~g-----l~--------------- 49 (171)
.+.+++.+...++.+|||||| +|+|+|+|++|++.|+++..... ++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSN 110 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEEC
Confidence 456778888778899999998 89999999999999998753211 00
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhc-ccCCCcCCCHHHHHHHHHhcC
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEY-VFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~-ifp~~~lp~~~~l~~~~~~~g 111 (171)
.+++++.++|||||.+++.++....- .... ..|..-. -.....+++..++...+...+
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~el~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 179 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL--PELH--QAWQAVDERPHANRFLPPDAIEQALNGWR 179 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch--HHHH--HHHHHhccCCccccCCCHHHHHHHHHhCC
Confidence 67899999999999999876554321 0000 0111000 011224567777777776655
No 44
>PRK08317 hypothetical protein; Provisional
Probab=98.88 E-value=2e-08 Score=78.12 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=55.3
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhc--hH---------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAG--LQ--------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~g--l~--------------- 49 (171)
-+.+++.++++++++|||||| +|+|+|+|+.+++.|+++....+ +.
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 456889999999999999997 79999999999999998722111 00
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++++.++|||||.+++...
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 688999999999999998764
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.86 E-value=1.5e-08 Score=78.05 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=50.6
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
.+.++++.++++|||+|| +|++||+|+++++.|+++++..++.
T Consensus 32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 367899999999999997 7999999999999999998776631
Q ss_pred --------------HHHHHHHhccccCcEEEEE
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.+.+.|||||++++.
T Consensus 112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 4566667777777777653
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.85 E-value=2.5e-09 Score=71.52 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=37.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchH--------------------------------HHHHHHHhccccCcEEEE
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQ--------------------------------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~--------------------------------~~~~~~~r~LkpgG~l~i 67 (171)
+|+|+|+|+++++.++++....++. .++++++|+|||||+++|
T Consensus 21 ~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 21 SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999998765432 789999999999999975
No 47
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.83 E-value=1.9e-08 Score=80.31 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------------HHH
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------QFF 52 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------~~~ 52 (171)
+.++.+|||||| +|+|+|+|+.+++.|+++++..++. .++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~ 196 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELA 196 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHH
Confidence 578999999998 6999999999999999998876652 567
Q ss_pred HHHHhccccCcEEEEEccc
Q 042963 53 GCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 53 ~~~~r~LkpgG~l~i~~i~ 71 (171)
+++.++|||||+++++.+.
T Consensus 197 ~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 197 PDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHhcCCCcEEEEEECc
Confidence 8899999999999987643
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=2.5e-08 Score=77.82 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=56.2
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------ 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------ 49 (171)
..+++.+...++.+|||||| +|+|+|+|+++++.+++++...++.
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 45677788889999999997 7999999999999999987542211
Q ss_pred ------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.+++++.++|+|||++++.++...
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 678899999999999988765443
No 49
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.81 E-value=2.2e-08 Score=81.47 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------
Q 042963 7 LIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------- 49 (171)
+++.+...++.+|||||| +|+|+|+|+++++.++++++..++.
T Consensus 112 ~~~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~ 191 (287)
T PRK12335 112 VLEAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILST 191 (287)
T ss_pred HHHHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEc
Confidence 444444445559999998 9999999999999999988765543
Q ss_pred ------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHh
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTS 109 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~ 109 (171)
.+++++.++|+|||.+++........ + ... .|..+..+.+|+.+.+.+
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~---~~~--------~p~~~~~~~~el~~~~~~ 251 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED-Y---PCP--------MPFSFTFKEGELKDYYQD 251 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-C---CCC--------CCCCcccCHHHHHHHhCC
Confidence 57889999999999977643222211 0 001 122244567888877754
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.79 E-value=3e-08 Score=75.64 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
+|.+|||||| +|+|||+|++|++.+++++++.+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~ 121 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASL 121 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCH
Confidence 4899999998 7999999999999999988776643
Q ss_pred -HHHHHHHhccccCcEEEEE
Q 042963 50 -QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.++++|+|||++++.
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 5677889999999998875
No 51
>PRK04266 fibrillarin; Provisional
Probab=98.79 E-value=3e-08 Score=78.21 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=48.3
Q ss_pred HcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh-ch----------------H-------
Q 042963 10 KARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA-GL----------------Q------- 49 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~-gl----------------~------- 49 (171)
++++++|++|||+|| +|+|+|+|++|++.+.+++++. ++ .
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 589999999999998 6999999999998776665432 11 1
Q ss_pred ----------HHHHHHHhccccCcEEEEE
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~ 68 (171)
.++++++++|||||+++|.
T Consensus 147 ~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 147 QDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2478999999999999984
No 52
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.77 E-value=1.9e-08 Score=74.06 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=49.8
Q ss_pred CCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH---------------------------
Q 042963 14 SKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ--------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~--------------------------- 49 (171)
+++.+|||+|| +++|||+|++|++.|++++++.+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 57899999998 7999999999999999988765543
Q ss_pred ---------HHHHHHHhccccCcEEEEEccc
Q 042963 50 ---------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ---------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.+++++.+.|+|||++++.+..
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6789999999999999987654
No 53
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=3.9e-08 Score=81.38 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+.++++.++++++++|||||| +|+|||+++++++.|+++++..|++
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 567889999999999999997 4999999999999999988765543
Q ss_pred ------------HHHHHHHhccccCcEEEEE
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.....+.++|+|||++++.
T Consensus 149 ~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 149 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 3456788999999999874
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.71 E-value=7.7e-08 Score=78.36 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
.++|++|||||| +|+|+|+|+.+++.|+++++..++.
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 468899999998 8999999999999999998765432
Q ss_pred ---HHHHHHHhccccCcEEEEEccc
Q 042963 50 ---QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ---~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.++.++.++|||||++++..+.
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 5678889999999999987654
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=98.70 E-value=8.9e-08 Score=75.04 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+...+..++++++++|||+|| +|+|+|+|+++++.|+++++..++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 3456677788999999999997 899999999999999998876654
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.70 E-value=7.3e-08 Score=72.91 Aligned_cols=42 Identities=19% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
.+.+.+...++.+|||+|| +|+|+|+|+++++.|+++++..+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 65 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN 65 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 4556777788899999998 69999999999999999876544
No 57
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.70 E-value=8.1e-08 Score=73.87 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=55.3
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
.+++.+..-++.++||+|| .||++|.|+..++.+++.+++.+++
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~s 100 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVS 100 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEE
Confidence 4667778777789999998 9999999999999999998888776
Q ss_pred -------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++.+...++|||.+++.+.+.
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 67899999999999998866544
No 58
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.67 E-value=8.4e-08 Score=75.01 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=61.3
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH---------------hch-------
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE---------------AGL------- 48 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~---------------~gl------- 48 (171)
...++.+.+.++.||||+|| +|||||+|+..++.+.+.... .++
T Consensus 24 ~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 24 VKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred HHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 34455555578889999998 999999999999986442100 000
Q ss_pred -----------H-----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCH
Q 042963 49 -----------Q-----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSL 100 (171)
Q Consensus 49 -----------~-----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~ 100 (171)
+ .+++.+.++|||||++++.+........ .. .| +..+.
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----~g--------pp--~~~~~ 169 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----AG--------PP--FSVSP 169 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----CC--------cC--CCCCH
Confidence 1 6789999999999998776654322110 00 11 34678
Q ss_pred HHHHHHHHh
Q 042963 101 NRITSTMTS 109 (171)
Q Consensus 101 ~~l~~~~~~ 109 (171)
+++.+.+..
T Consensus 170 ~eL~~~f~~ 178 (213)
T TIGR03840 170 AEVEALYGG 178 (213)
T ss_pred HHHHHHhcC
Confidence 888888864
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.67 E-value=1e-07 Score=74.34 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=65.3
Q ss_pred HHHHHcC--CCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhch----H----------------
Q 042963 6 FLIEKAR--VSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGL----Q---------------- 49 (171)
Q Consensus 6 ~ll~~l~--l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl----~---------------- 49 (171)
.+++.+. +.++.+|||||| +|+|+|+|++|++.|+++....+. .
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~i 123 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIV 123 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEE
Confidence 4555665 678999999998 899999999999999998765432 1
Q ss_pred ---------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccC------CCcCCCHHHHHHHHH
Q 042963 50 ---------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFP------GGCLPSLNRITSTMT 108 (171)
Q Consensus 50 ---------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp------~~~lp~~~~l~~~~~ 108 (171)
..++++.+++++++.+.+.. ....+ ....++.. .++ .-..+++.++.+.++
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWL----AFLKMIGE-LFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHH----HHHHHHHh-hCcCcccccceEEecHHHHHHHHH
Confidence 45778888888776554421 11100 01111111 122 124567899999999
Q ss_pred hcCC
Q 042963 109 SSSR 112 (171)
Q Consensus 109 ~~g~ 112 (171)
++|+
T Consensus 196 ~~Gf 199 (219)
T TIGR02021 196 ELGW 199 (219)
T ss_pred HcCc
Confidence 9884
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.63 E-value=9.6e-08 Score=73.40 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.+..+|||||| +|+|||+|+++++.|+++++..++.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ 66 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC
Confidence 45679999998 8999999999999999988776543
No 61
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.63 E-value=7.2e-08 Score=75.62 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH-----hchH--------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE-----AGLQ-------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~-----~gl~-------------- 49 (171)
+++.++.+++..+=.++||+|| +.||||||++|++.|.++--- ....
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccch
Confidence 6888999999999999999999 899999999999999876210 0000
Q ss_pred -------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+|..+...|+|||.|.++.-+.
T Consensus 193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 66788899999999998875433
No 62
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.62 E-value=8.5e-08 Score=71.58 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred EEEcCCHHHHHHHHHHHHHh------chH--------------------------------HHHHHHHhccccCcEEEEE
Q 042963 27 TGITLSEEQLKYTEMKVKEA------GLQ--------------------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 27 tgId~S~~~~~~A~~~~~~~------gl~--------------------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
+|||+|++|++.|+++.+.. +++ ..+++++|+|||||++++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 59999999999998775422 122 6799999999999999998
Q ss_pred cccCCC
Q 042963 69 FSSVPD 74 (171)
Q Consensus 69 ~i~~~~ 74 (171)
++..+.
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 887654
No 63
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.62 E-value=3.2e-07 Score=70.82 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh-chH-----------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA-GLQ----------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~-gl~----------------- 49 (171)
+.+++.+...++.+|||+|| +++|+|+++++++.++++.... ++.
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 45667777889999999997 7999999999999998875300 010
Q ss_pred ---------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 ---------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ---------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++++.++|+|||++++.+...
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 67899999999999999866543
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.61 E-value=4.9e-07 Score=70.34 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=69.1
Q ss_pred HHHHHHHcC----CCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhch-H---------------
Q 042963 4 VSFLIEKAR----VSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGL-Q--------------- 49 (171)
Q Consensus 4 ~~~ll~~l~----l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl-~--------------- 49 (171)
++.+.+.+. ...+.+|||||| +|+|+|+|+.+++.+++++...++ .
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG 109 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC
Confidence 344555554 245889999997 899999999999999987654432 0
Q ss_pred --------------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCC----CcCCCHHHHHH
Q 042963 50 --------------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPG----GCLPSLNRITS 105 (171)
Q Consensus 50 --------------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~----~~lp~~~~l~~ 105 (171)
.+++.+.++|+|||.+++.....+...+.......+++.....++ ..+.+..++.+
T Consensus 110 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTS 189 (224)
T ss_pred CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHH
Confidence 577899999999999988765432111000000011111111111 13457788888
Q ss_pred HHHhcCC
Q 042963 106 TMTSSSR 112 (171)
Q Consensus 106 ~~~~~g~ 112 (171)
.++++|+
T Consensus 190 ~l~~~G~ 196 (224)
T TIGR01983 190 WLESAGL 196 (224)
T ss_pred HHHHcCC
Confidence 8988874
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.61 E-value=8.9e-08 Score=77.24 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHcCCCCCCeEEEeCC-------------------eEEEEcCCHHHHHHHHHHHHHhc----------hH-------
Q 042963 6 FLIEKARVSKGHDVLFLRL-------------------DYTGITLSEEQLKYTEMKVKEAG----------LQ------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-------------------~VtgId~S~~~~~~A~~~~~~~g----------l~------- 49 (171)
.++...-..++.+|||||| +|+|+|+|++|++.|+++..... +.
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I 155 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAI 155 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEE
Confidence 3344333456789999998 37999999999999987642111 00
Q ss_pred ------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+++++|+|||||++++..
T Consensus 156 ~~~~~~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 156 IRIYAPCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred EEecCCCCHHHHHhhccCCCEEEEEe
Confidence 44689999999999998754
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.60 E-value=1.8e-07 Score=78.04 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=53.4
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+.+++.+......+|||+|| +|+++|+|+.+++.|+++++..++.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 45677777666679999998 8999999999999999988776543
Q ss_pred ------------------HHHHHHHhccccCcEEEEE
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++++.+.|||||.+++.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 6678889999999999874
No 67
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.60 E-value=1e-07 Score=74.20 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH------------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------ 49 (171)
...++.+..+.+-.+|.|+|| .|+|||-|++|++.|+++.....+.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfa 98 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFA 98 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhh
Confidence 456888999999999999999 8999999999999998876444331
Q ss_pred -----------HHHHHHHhccccCcEEEEEcccCCCccccc-c---cCccchhhhcc---cCCCcCCCHHHHHHHHHhcC
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDE-H---RLSPGFMKEYV---FPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~-~---~~~~~~~~~~i---fp~~~lp~~~~l~~~~~~~g 111 (171)
..|..+...|.|||.+.+|--..-+...+. . ....+|-...- +-...+|+++.+-+.+...+
T Consensus 99 NAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~ 178 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLA 178 (257)
T ss_pred hhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCccc
Confidence 778899999999999999853332221111 1 12224544321 11245889999988887765
Q ss_pred C
Q 042963 112 R 112 (171)
Q Consensus 112 ~ 112 (171)
.
T Consensus 179 ~ 179 (257)
T COG4106 179 C 179 (257)
T ss_pred c
Confidence 3
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.59 E-value=2.1e-07 Score=71.98 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.2
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
++.+|||||| +|+|||+|+++++.|+++++..++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~ 89 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL 89 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC
Confidence 7889999998 799999999999999998876554
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.59 E-value=1e-07 Score=77.98 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
.++|++|||||| +|+|+|+++..++.|+++++..|++
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVL 238 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHH
Confidence 678899999998 8999999999999999999988775
Q ss_pred -HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 -QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.....+.+.|+|||+++++.|...
T Consensus 239 ~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 239 LELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp HHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred HHHHHHHHHhhCCCCEEEEccccHH
Confidence 566778899999999999876543
No 70
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.59 E-value=9.8e-08 Score=72.48 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=56.0
Q ss_pred HHHHHHHHcC---CCCC-CeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------
Q 042963 3 KVSFLIEKAR---VSKG-HDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------- 49 (171)
Q Consensus 3 k~~~ll~~l~---l~~g-~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------- 49 (171)
.++++.+... +... +||||+|| ..||||.|+..++.|+..+++.+++
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 4566666665 4444 49999998 6999999999999999999887765
Q ss_pred -------------------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 -------------------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 -------------------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.|+..+.+.|+|||+++|...+.+
T Consensus 131 ~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 131 DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 577788889999999988654443
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.58 E-value=8.5e-08 Score=72.20 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=53.9
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
.+++.+...++.+|||+|| +|+++|+|+.+++.|+++++..+++
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 4566666668899999998 6999999999999999999887643
Q ss_pred -------------------HHHHHHHhccccCcEEEEE
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.+.+.|||||++++.
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 6788999999999999763
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.58 E-value=2.2e-07 Score=78.41 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch------H-------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL------Q------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl------~------------- 49 (171)
+.+++.+....+.+|||+|| +|+++|+|+.+++.|+++++..+. +
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 35778887777789999998 899999999999999998754421 1
Q ss_pred -----------------------HHHHHHHhccccCcEEEEE
Q 042963 50 -----------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -----------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
++|+.++++|+|||.+++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5778889999999998875
No 73
>PRK06922 hypothetical protein; Provisional
Probab=98.58 E-value=2.3e-07 Score=82.53 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------
Q 042963 9 EKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------- 49 (171)
..++..+|.+|||||| +|+|+|+|+.|++.|+++....+..
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEE
Confidence 3456678999999998 8999999999999999875432110
Q ss_pred --------------------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 --------------------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 --------------------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.++++++++|||||++++.+...
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 23578899999999999976443
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.56 E-value=3.2e-07 Score=71.45 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHHcC-CCCCCeEEEeCC-----------------eEEEEcCCH-----------------HHHHHHHHHHHHhc
Q 042963 3 KVSFLIEKAR-VSKGHDVLFLRL-----------------DYTGITLSE-----------------EQLKYTEMKVKEAG 47 (171)
Q Consensus 3 k~~~ll~~l~-l~~g~rVLDIGc-----------------~VtgId~S~-----------------~~~~~A~~~~~~~g 47 (171)
|+..+.++.+ +++|.+|||||| +|+|||+++ ++++..++......
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 6777788888 699999999997 799999995 22333333222111
Q ss_pred hH--------------------------HHHHHHHhccccCcEEEEEccc
Q 042963 48 LQ--------------------------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 48 l~--------------------------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
++ ..++++.++|||||++++..+.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 11 3678899999999999986543
No 75
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.55 E-value=2.8e-07 Score=71.94 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCC--CCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhch---------H--------
Q 042963 3 KVSFLIEKARVSK--GHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGL---------Q-------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~--g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl---------~-------- 49 (171)
..++.|+.+.+++ ..=|||||| ..+|+|+|+.|++.|.++--+..+ .
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 4577888899888 678999999 899999999999999964322111 1
Q ss_pred -------------------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -------------------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -------------------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.||..++.+|++|++.++|..-.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 78999999999999999986443
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.54 E-value=4.5e-07 Score=75.13 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.++..+++++|++|||+|| +|+|+|+++.|++.|+++++..|+.
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 4556678999999999998 8999999999999999998776643
No 77
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=3.7e-07 Score=78.63 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
..+..+++.+|++|||+|| +|+|+|+|+++++.+++++++.|+
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 300 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI 300 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC
Confidence 3456778999999999997 799999999999999999987765
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.54 E-value=3.8e-07 Score=77.01 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+.+++.+....+..+||||| .++|||+++.+++.|.+++...+++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 46677788888899999998 8999999999999999998877654
Q ss_pred ------------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.++++++|+|+|||.+.+.+
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 36778888888888887753
No 79
>PLN03075 nicotianamine synthase; Provisional
Probab=98.54 E-value=3.4e-07 Score=74.74 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=50.7
Q ss_pred HHHcCCCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHH-hchH-------------------
Q 042963 8 IEKARVSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKE-AGLQ------------------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~-~gl~------------------- 49 (171)
+..+...+..+|||||| +++|+|+++++++.|++.++. .++.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 34445558899999998 699999999999999999854 4443
Q ss_pred ------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+++.|+|||.+++..
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 67888999999999998864
No 80
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.53 E-value=4.6e-07 Score=77.64 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=38.0
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+...+++++|++|||+|| +|+|+|+|+++++.+++++++.|+
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~ 287 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL 287 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4566789999999999997 799999999999999999877654
No 81
>PTZ00146 fibrillarin; Provisional
Probab=98.52 E-value=6.5e-07 Score=72.94 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHH----HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH-hchH-----------
Q 042963 3 KVSFLI----EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE-AGLQ----------- 49 (171)
Q Consensus 3 k~~~ll----~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~-~gl~----------- 49 (171)
|+.-.+ +.+.+++|++|||+|| .|++||+|+++.+...+.++. .++.
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK 195 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh
Confidence 555333 5678999999999998 799999998754333332221 1111
Q ss_pred ----------------------HHHHHHHhccccCcEEEE
Q 042963 50 ----------------------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 50 ----------------------~~~~~~~r~LkpgG~l~i 67 (171)
.+..++.++|||||+++|
T Consensus 196 y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 196 YRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred hhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence 345688999999999998
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4.4e-07 Score=74.08 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
+++|++|||+|| +|+|+|+++..++.|+++++..++.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 349999999998 8999999999999999999877654
Q ss_pred ----HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ----QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.+...+.+.|||||+++++.|...
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~ 267 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILED 267 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence 566788999999999999876543
No 83
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.51 E-value=6.8e-07 Score=71.94 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
...+++++|++|||+|| .|+++|+|+.+++.+++++++.|+
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~ 121 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV 121 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC
Confidence 35678999999999997 799999999999999999887764
No 84
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=6.4e-07 Score=76.92 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=37.1
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+...+++++|++|||+|| +|+++|+|+++++.+++++++.|+
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~ 287 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL 287 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 345679999999999997 899999999999999999887664
No 85
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.49 E-value=2.1e-08 Score=68.39 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=32.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchH-------------------------------------HHHHHHHhccccCcEE
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------------------QFFGCCESLLAEHGLL 65 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~-------------------------------------~~~~~~~r~LkpgG~l 65 (171)
++||+|+|+.|++.|+++..+.+.. .+++.++++|||||+|
T Consensus 22 ~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 22 RYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred EEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 8999999999999888887665421 7788999999999975
No 86
>PRK05785 hypothetical protein; Provisional
Probab=98.49 E-value=3.2e-07 Score=72.26 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=39.1
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHH-------hchH--------------------HH
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKE-------AGLQ--------------------QF 51 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~-------~gl~--------------------~~ 51 (171)
.++.+|||||| +|+|||+|++|++.|+++... ..+. ..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 45789999998 799999999999999876311 1111 78
Q ss_pred HHHHHhccccC
Q 042963 52 FGCCESLLAEH 62 (171)
Q Consensus 52 ~~~~~r~Lkpg 62 (171)
+++++|+|||.
T Consensus 130 l~e~~RvLkp~ 140 (226)
T PRK05785 130 IAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHhcCc
Confidence 99999999994
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=7.1e-07 Score=76.51 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 6 FLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+...+++++|++|||+|| +|+|+|+|+.+++.+++++++.|+
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL 293 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4556789999999999997 799999999999999999876543
No 88
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.46 E-value=9.2e-07 Score=69.38 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH---------------h---------
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE---------------A--------- 46 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~---------------~--------- 46 (171)
...++.+.+.++.||||+|| +|||||+|+..++.+.+.... .
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 34445566778899999998 999999999999986432100 0
Q ss_pred --------c-hH-----------------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCH
Q 042963 47 --------G-LQ-----------------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSL 100 (171)
Q Consensus 47 --------g-l~-----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~ 100 (171)
+ ++ .+++.+.++|+|||++++.+........ .. .| +..+.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----~g--------Pp--~~~~~ 172 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----AG--------PP--FSVSD 172 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----CC--------CC--CCCCH
Confidence 0 00 7789999999999986654433322110 00 12 34678
Q ss_pred HHHHHHHHh
Q 042963 101 NRITSTMTS 109 (171)
Q Consensus 101 ~~l~~~~~~ 109 (171)
+++.+.+..
T Consensus 173 ~el~~~~~~ 181 (218)
T PRK13255 173 EEVEALYAG 181 (218)
T ss_pred HHHHHHhcC
Confidence 899888865
No 89
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.46 E-value=7.6e-07 Score=72.97 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=46.4
Q ss_pred CCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh--chH------------------------
Q 042963 13 VSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA--GLQ------------------------ 49 (171)
Q Consensus 13 l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~--gl~------------------------ 49 (171)
+.++.+|||+|| +|+|||+|++|++.|++++... ++.
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 357889999998 6999999999999998876542 111
Q ss_pred -----------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.++++++++|+|||.+++..
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 67899999999999998743
No 90
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.1e-06 Score=69.90 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+..++.++++.||+||||.|. +|++.|+-++..+.|+++.++.++.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 457889999999999999993 9999999999999999999987765
Q ss_pred -------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+++.|||||.+++..
T Consensus 163 ~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 78889999999999987753
No 91
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.44 E-value=7.4e-07 Score=77.11 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHh-c------------h--H-----
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEA-G------------L--Q----- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~-g------------l--~----- 49 (171)
...+++.+...++.+|||||| +|+|||+|++|++.+++..... + + .
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 356778888888999999998 8999999999999886542210 0 0 0
Q ss_pred -----------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.++++++++|||||++++.+.+.
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 57889999999999999876543
No 92
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.42 E-value=2.8e-07 Score=63.18 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+++|||+|++|++.++++....+.
T Consensus 26 ~~~gvD~s~~~l~~~~~~~~~~~~ 49 (101)
T PF13649_consen 26 RVIGVDISPEMLELAKKRFSEDGP 49 (101)
T ss_dssp EEEEEES-HHHHHHHHHHSHHTTT
T ss_pred eEEEEECCHHHHHHHHHhchhcCC
Confidence 899999999999999999876553
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.42 E-value=4.7e-07 Score=63.26 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 16 GHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 16 g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
|.+|||+|| +++|+|+++..++.|+.+.+..++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~ 48 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL 48 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC
Confidence 679999997 999999999999999999887765
No 94
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=1.3e-06 Score=75.06 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+...+++++|++|||+|| +|+++|+++++++.+++++++.|+
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~ 302 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL 302 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 3456689999999999997 799999999999999999887665
No 95
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=1.3e-06 Score=75.13 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+...+++++|++|||+|| +|+|+|+|+++++.+++++++.|+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~ 300 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL 300 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3456788999999999997 799999999999999999877664
No 96
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=8e-07 Score=68.81 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch-H----------------------------
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL-Q---------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl-~---------------------------- 49 (171)
..--.|||||| +||+||.++.|-+.|.+.+++..- +
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 33346899997 999999999999999998876421 1
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+.++++.|+|+|||++++..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 78999999999999998754
No 97
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.39 E-value=1.3e-06 Score=68.04 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
..+.+|||||| +|+|+|+|+++++.++++... .+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-NVQFICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-CCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence 44579999998 689999999999999887531 110
Q ss_pred ----HHHHHHHhccccCcEEEEEcccC
Q 042963 50 ----QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++++.++|||||.+++.....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 67899999999999999875433
No 98
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.39 E-value=1.2e-06 Score=69.48 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=52.9
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
+...+.+.++.+|||||| +|+++|+++++++.|+++.++.|+.
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence 334456778889999996 8999999999999999998877653
Q ss_pred -------------------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++.+.+.|+|||.+++..+
T Consensus 140 ~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 140 DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 567788899999999887654
No 99
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.37 E-value=3.9e-06 Score=65.43 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 12 RVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 12 ~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
+..++.+|||||| +|+|+|+|++|++.|+++....+
T Consensus 60 ~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~ 109 (230)
T PRK07580 60 GDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG 109 (230)
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 3578899999998 89999999999999999876544
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=98.37 E-value=1.9e-06 Score=64.89 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.4
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHh
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~ 46 (171)
..+++.+...++.+|||+|| +|+|+|+|+++++.++++++..
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~ 68 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN 68 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc
Confidence 34566677789999999997 8999999999999998887543
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.34 E-value=2.5e-06 Score=69.45 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=32.6
Q ss_pred cCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 11 ARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 11 l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+..+++.+|||+|| +|+|+|+|+++++.|+++++..++
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~ 170 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL 170 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 33456689999997 799999999999999999987765
No 102
>PRK06202 hypothetical protein; Provisional
Probab=98.33 E-value=2e-06 Score=67.63 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeCC--------------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 12 RVSKGHDVLFLRL--------------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
...++.+|||||| +|+|+|+|++|++.|+++....++.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 4467889999998 6999999999999999876433322
Q ss_pred ------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.++++++++++ |.+++.++..+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 47889999988 56666666554
No 103
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.29 E-value=1.3e-06 Score=67.15 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred hHHHHHHH-HcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHh-chH----------------
Q 042963 2 RKVSFLIE-KARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEA-GLQ---------------- 49 (171)
Q Consensus 2 ~k~~~ll~-~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~-gl~---------------- 49 (171)
+|.+.++. .|.-..-.++||+|| +++++|+|+..++.|+++++.. +++
T Consensus 29 ~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FD 108 (201)
T PF05401_consen 29 RKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFD 108 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EE
T ss_pred HHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCee
Confidence 46666665 578788899999998 9999999999999999998653 222
Q ss_pred ------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+.+.+.+.|+|||.+++.+
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 56788899999999999865
No 104
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.29 E-value=1.6e-06 Score=69.82 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=28.6
Q ss_pred HHcCCCCCCeEEEeCC-------------------------eEEEEcCCHHHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-------------------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-------------------------~VtgId~S~~~~~~A~~~ 42 (171)
+.....++.||||+|| +|+|+|+|++|++.|++.
T Consensus 93 ~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 93 ASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred HhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 3444566789999998 599999999999999975
No 105
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.27 E-value=1.8e-06 Score=71.73 Aligned_cols=56 Identities=30% Similarity=0.389 Sum_probs=44.9
Q ss_pred CCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhc-----------hH-------------------
Q 042963 15 KGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAG-----------LQ------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~g-----------l~------------------- 49 (171)
++.+|||+|| .++|+|+|.+.++.|+++.+... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 8999999999 99999999999999999983211 00
Q ss_pred -------------------------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -------------------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -------------------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++.+.+.|+|||.++..+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 689999999999999988654
No 106
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.26 E-value=5e-06 Score=65.55 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 4 VSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
++.+++.+. ..+.+|||+|| +|+|+|+|+++++.|+++++..++
T Consensus 77 ~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~ 136 (251)
T TIGR03534 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL 136 (251)
T ss_pred HHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 345555554 34569999997 899999999999999999876654
No 107
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.24 E-value=5.3e-06 Score=66.12 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 7 LIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
|.....+....+|||||| +|+|||+++++.+.|+++.+..+++
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~ 94 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE 94 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch
Confidence 345567777899999996 8999999999999999999877765
No 108
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.23 E-value=7.6e-06 Score=67.61 Aligned_cols=42 Identities=17% Similarity=0.001 Sum_probs=33.8
Q ss_pred HHHHHHcCC---CCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHh
Q 042963 5 SFLIEKARV---SKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 5 ~~ll~~l~l---~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~ 46 (171)
+.+++.+.. .+|.+|||||| +|+|+|+|++|++.|+++++..
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 445555543 36889999998 8999999999999999997653
No 109
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.23 E-value=7.1e-06 Score=64.35 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
-..+.-.+.+.+..+|||||. ++|+||+++++.+.|+++.++.|+.
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 345556677889999999993 7999999999999999999988765
Q ss_pred -------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.||+.+.+.|+|||.+++..+..+
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 789999999999999998765443
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=5.1e-06 Score=67.71 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
+.+++.+....+.+|||+|| +||-+|+|...++.|+++++..+++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~ 227 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDL 227 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccE
Confidence 56889999988889999999 9999999999999999999876543
Q ss_pred -------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+++++..+.|++||.|.|-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 78899999999999998753
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.20 E-value=7.9e-06 Score=65.49 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~ 44 (171)
+.+++.+...++.+|||+|| +|+|+|+|+++++.|+++++
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34445556778899999997 89999999999999999876
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.18 E-value=8.9e-06 Score=66.94 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=29.8
Q ss_pred CCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 16 GHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 16 g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
..+|||+|| +|+|+|+|+.+++.|+++++..++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l 182 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL 182 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 379999997 899999999999999999987765
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.17 E-value=1e-05 Score=64.76 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.7
Q ss_pred HHHHHHcCC-CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 5 SFLIEKARV-SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 5 ~~ll~~l~l-~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+.+++.+.. .++.+|||+|| +|+|+|+|+++++.|+++++..+.
T Consensus 75 ~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~ 135 (251)
T TIGR03704 75 DEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG 135 (251)
T ss_pred HHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 444444432 34569999997 799999999999999999876654
No 114
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.17 E-value=8.9e-06 Score=66.10 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
++.+|||+|| +|+|+|+|+++++.|+++++..++
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL 163 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3479999997 899999999999999999876654
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.14 E-value=9.3e-06 Score=69.25 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
++++.+|||||| +|+|+|+|+++++.|+++++..+.
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~ 300 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA 300 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 457789999997 799999999999999999877654
No 116
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.14 E-value=2.9e-06 Score=66.57 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH-h------c--------hH-----
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE-A------G--------LQ----- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~-~------g--------l~----- 49 (171)
+...++.+..+++.|||..|| +|+|||+|+..++.+.+.... . + ++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 556777789999999999999 999999999999998543211 0 0 00
Q ss_pred ------------------------------HHHHHHHhccccCcEEEEEccc
Q 042963 50 ------------------------------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ------------------------------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.|.+.+.++|+|||++++.++.
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 8999999999999996655554
No 117
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=4.6e-06 Score=66.05 Aligned_cols=31 Identities=6% Similarity=0.152 Sum_probs=27.7
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~ 44 (171)
-.+..+||||| .|.|+||++..++.|+++++
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 35678999999 89999999999999999864
No 118
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.13 E-value=7.6e-06 Score=63.52 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHH
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~ 43 (171)
.+.++.+|||||| +|+|||+|++|++.|+++.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 3568889999998 7999999999999999864
No 119
>PRK04457 spermidine synthase; Provisional
Probab=98.12 E-value=9.5e-06 Score=65.32 Aligned_cols=60 Identities=15% Similarity=0.355 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc----hH-----------------------
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG----LQ----------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g----l~----------------------- 49 (171)
..++.+|||||| +|++||+++++++.|+++....+ +.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 346789999996 89999999999999998754221 11
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
++++++.+.|+|||++++..+..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 78899999999999999865543
No 120
>PLN02476 O-methyltransferase
Probab=98.12 E-value=1.2e-05 Score=65.24 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
+.-.+.+.+..+|||||+ +|+++|.+++..+.|+++.++.|+.
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~ 189 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN 189 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence 334456677899999995 7999999999999999999888764
Q ss_pred -------------------HHHHHHHhccccCcEEEEEccc
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.+++.+.+.|+|||.+++..+.
T Consensus 190 ~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 190 GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 5677788889999998887653
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.12 E-value=1.1e-05 Score=70.64 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
++.+|||||| +|+|+|+|+++++.|+++++..++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l 187 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV 187 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 4579999997 899999999999999999876543
No 122
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=9.5e-06 Score=64.14 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=63.3
Q ss_pred eEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------------
Q 042963 18 DVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------ 49 (171)
Q Consensus 18 rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------ 49 (171)
+|||||| .|.+.|.|+..++..+++.....-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999 8999999999999998875322100
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchh--hhcccCCC---cCCCHHHHHHHHHhcCC
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFM--KEYVFPGG---CLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~--~~~ifp~~---~lp~~~~l~~~~~~~g~ 112 (171)
..+..++++|||||.+++-+.+.-+-.-..... ..-+ .-|+-.+| ++-+.+++...+.++|+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~-~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK-GQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC-CceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 778999999999999999887664321000110 0001 11332233 34568888888888884
No 123
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.10 E-value=8.9e-06 Score=64.97 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+..++..++++||++|||.|. +|+..|..++.++.|+++.+..|+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~ 91 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD 91 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC
Confidence 567889999999999999993 9999999999999999999988764
No 124
>PRK00811 spermidine synthase; Provisional
Probab=98.09 E-value=1.3e-05 Score=65.27 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=45.9
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc--------hH--------------------
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG--------LQ-------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g--------l~-------------------- 49 (171)
+...+|||||| +|++||+++++++.|++.....+ +.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999996 89999999999999999865321 11
Q ss_pred -----------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 57889999999999998763
No 125
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.05 E-value=1.1e-05 Score=62.87 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=51.6
Q ss_pred CCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------------
Q 042963 12 RVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------- 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------- 49 (171)
......+|||||+ +|++||++++..+.|++..++.|+.
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3456679999995 9999999999999999999988875
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.||+.+.+.|+|||.+++..+..
T Consensus 122 fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 122 FDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eeEEEEcccccchhhHHHHHhhhccCCeEEEEccccc
Confidence 77888889999999998876543
No 126
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.05 E-value=2.2e-05 Score=67.60 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
-++.+++.+++.+|++|||+|| +|+|+|+|++|++.|+++++..++.
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD 345 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3567778889999999999998 8999999999999999998776653
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.02 E-value=1.3e-05 Score=61.94 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=44.7
Q ss_pred eEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------------
Q 042963 18 DVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------------- 49 (171)
Q Consensus 18 rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------------- 49 (171)
-+||||| .++|||++..-+..|.+++.+.++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999998 8999999999999999999888775
Q ss_pred --------------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.++++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 78888999999999887754
No 128
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.01 E-value=2e-05 Score=62.14 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH-------------Hhc-----------
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK-------------EAG----------- 47 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~-------------~~g----------- 47 (171)
.....+.+.++.|||+.|| +|+|||+|+..++.+.+... ..+
T Consensus 34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f 113 (226)
T PRK13256 34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIF 113 (226)
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCc
Confidence 3455667778899999999 99999999999999865210 001
Q ss_pred -----------hH-----------------HHHHHHHhccccCcEEEEEcc
Q 042963 48 -----------LQ-----------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 48 -----------l~-----------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
++ .|.+.+.++|+|||++++.++
T Consensus 114 ~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 114 NLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 11 889999999999999987664
No 129
>PLN02366 spermidine synthase
Probab=97.94 E-value=3.6e-05 Score=63.46 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh--chH-------------------------
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA--GLQ------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~--gl~------------------------- 49 (171)
.++..+||+||| +|+.||+++++++.|++..... +++
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 356789999996 8999999999999999976432 111
Q ss_pred ------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+++.|+|||.++++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 57899999999999998764
No 130
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.93 E-value=5.8e-05 Score=57.45 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=25.9
Q ss_pred HHHHHHHHc-CCCCCCeEEEeCC-----------------eEEEEcCCHHH
Q 042963 3 KVSFLIEKA-RVSKGHDVLFLRL-----------------DYTGITLSEEQ 35 (171)
Q Consensus 3 k~~~ll~~l-~l~~g~rVLDIGc-----------------~VtgId~S~~~ 35 (171)
|+..+.++. .+++|++|||||| +|+|+|+|+.+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 455555544 5799999999997 59999999854
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.88 E-value=7.5e-05 Score=63.58 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+.+|.+|||+|| +|++||+|+.+++.|+++++..++
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl 268 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL 268 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 357899999997 899999999999999999987765
No 132
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.87 E-value=7e-05 Score=64.23 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++.+++.++++++++|||+|| +|+|||+|+++++.|+++++..++.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA 340 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 456777788899999999998 8999999999999999998877654
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.1e-05 Score=61.26 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=29.0
Q ss_pred eEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 18 DVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 18 rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+|||||| +|+|+|+|+..++.|+++++..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 7999995 899999999999999999998884
No 134
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.87 E-value=7.7e-05 Score=64.78 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHc--CCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 9 EKA--RVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 9 ~~l--~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
..+ +++||++|||++| .|+++|+++.-+...++++++.|+.
T Consensus 105 ~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 105 AALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred HHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhc
Confidence 445 7899999999996 7999999999999999999887764
Q ss_pred --------------------------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 --------------------------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 --------------------------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.+++.+.+.|||||+++-.+.+..
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 667888999999999976665543
No 135
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.85 E-value=2.8e-05 Score=61.53 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHcCCCCCC-eEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHh----chH--------------------
Q 042963 9 EKARVSKGH-DVLFLRL--------------DYTGITLSEEQLKYTEMKVKEA----GLQ-------------------- 49 (171)
Q Consensus 9 ~~l~l~~g~-rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~----gl~-------------------- 49 (171)
+-+...++. .++|+|| +|+|+|+|++|++.|+++-+.. +..
T Consensus 26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 26 KIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred HHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 344566676 7899998 9999999999999998764321 000
Q ss_pred -----------HHHHHHHhccccC-cEEEEEccc
Q 042963 50 -----------QFFGCCESLLAEH-GLLLLQFSS 71 (171)
Q Consensus 50 -----------~~~~~~~r~Lkpg-G~l~i~~i~ 71 (171)
.++++++|+||+. |.+++....
T Consensus 106 ~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 106 AAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 8899999999775 588776554
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.84 E-value=8.3e-05 Score=60.02 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=44.2
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc-------hH---------------------
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG-------LQ--------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g-------l~--------------------- 49 (171)
+...+|||||| +|+++|+++++++.|++.....+ +.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 44559999996 79999999999999998753311 00
Q ss_pred ----------------HHHHHHHhccccCcEEEEE
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~ 68 (171)
++++.+.+.|+|||+++++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5678999999999999886
No 137
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.80 E-value=0.0001 Score=67.08 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=31.5
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+|.+|||+|| +||+||+|+.+++.|+++++..|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 46899999997 799999999999999999987665
No 138
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.77 E-value=0.00011 Score=58.74 Aligned_cols=63 Identities=8% Similarity=0.152 Sum_probs=50.8
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
..+...+..+|||||+ +|++||.+++..+.|++..+++|+.
T Consensus 73 ~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 73 MLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc
Confidence 3345566779999993 8999999999999999999888753
Q ss_pred ------------------HHHHHHHhccccCcEEEEEccc
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.||+.+.+.|+|||.+++..+.
T Consensus 153 ~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 153 YHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred cCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 4567778889999998876543
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.76 E-value=7e-05 Score=56.09 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
++.+++.+++.++++|||||| +|+|+|+++.+++.++++..
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc
Confidence 467899999999999999997 89999999999999998764
No 140
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=0.0002 Score=57.86 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.-..+..+||+|| +||+||.|+..+..|.+++.+.++.
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~ 198 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS 198 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc
Confidence 3445668999996 9999999999999999999887765
No 141
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.71 E-value=0.00017 Score=59.07 Aligned_cols=41 Identities=5% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~ 44 (171)
++.+++.+.++||..+||.+| +|+|+|.++++++.|+++..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 678999999999999999997 79999999999999997753
No 142
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.70 E-value=7.6e-05 Score=60.32 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
++.+++.+++.++++|||||| +|+|+|+|++|++.++++..
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc
Confidence 577889999999999999998 79999999999999988764
No 143
>PHA03411 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00017 Score=58.48 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=27.7
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHH
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~ 43 (171)
..+++.+|||+|| +|+|+|+|+.+++.|+++.
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 4456679999997 7999999999999999864
No 144
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.65 E-value=0.00013 Score=59.79 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
-++.+++.+++.++++|||||| +|+|+|+++.+++.+++++...+
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 4678899999999999999997 79999999999999999876544
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=97.65 E-value=0.00013 Score=61.27 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHH--H---HHhch-----H------------------
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMK--V---KEAGL-----Q------------------ 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~--~---~~~gl-----~------------------ 49 (171)
....+||+||| +|+.||+++++++.|++. . .+..+ .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44469999996 899999999999999962 1 01111 0
Q ss_pred --------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
++++.+++.|+|||.++++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 58899999999999998874
No 146
>PRK03612 spermidine synthase; Provisional
Probab=97.63 E-value=0.00011 Score=64.62 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=45.2
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHH--HHH--------hchH-----------------
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMK--VKE--------AGLQ----------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~--~~~--------~gl~----------------- 49 (171)
.++..+|||||| +|++||+++++++.|+++ ..+ ..++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 356789999996 899999999999999983 111 1111
Q ss_pred ---------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ---------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
++++.+++.|||||+++++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 47889999999999999875
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00016 Score=57.15 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=45.9
Q ss_pred CeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch-H------------------------------
Q 042963 17 HDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL-Q------------------------------ 49 (171)
Q Consensus 17 ~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl-~------------------------------ 49 (171)
..+||||| .+.|||+...-+..|.+++.+.++ .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999998 899999999999999999999998 4
Q ss_pred ---------------HHHHHHHhccccCcEEEEE
Q 042963 50 ---------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ---------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.+.++|||||.+.+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 6778888888888888764
No 148
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.56 E-value=0.0003 Score=55.61 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHcCC-CCCCeEEEeCC---------------eEEEEcCCHHHHHH
Q 042963 3 KVSFLIEKARV-SKGHDVLFLRL---------------DYTGITLSEEQLKY 38 (171)
Q Consensus 3 k~~~ll~~l~l-~~g~rVLDIGc---------------~VtgId~S~~~~~~ 38 (171)
|+..+++..++ .+|.+|||||| +|+|||+|++|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 78899999887 48889999998 89999999988876
No 149
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.56 E-value=0.00039 Score=57.35 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.+.+.++..++.+|||+|| +|+|||+|+++++.|+++++..++.
T Consensus 164 ~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 164 TARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred HHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3444555456799999998 8999999999999999999887764
No 150
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.56 E-value=0.00018 Score=57.75 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=38.8
Q ss_pred hHHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 2 RKVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
+-++.+++.+++.++++|||||| +|+|||+++.+++.++++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc
Confidence 35678899999999999999997 89999999999999998764
No 151
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.55 E-value=0.00019 Score=59.19 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=31.6
Q ss_pred HcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 10 KARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
.+-.++++.|||+|| +++||||++.-++.|+++.+.
T Consensus 112 ~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrd 162 (389)
T KOG1975|consen 112 NLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRD 162 (389)
T ss_pred HHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHH
Confidence 344689999999999 899999999999999998753
No 152
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.53 E-value=0.00027 Score=60.04 Aligned_cols=55 Identities=27% Similarity=0.335 Sum_probs=47.6
Q ss_pred CCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------------
Q 042963 15 KGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------ 49 (171)
Q Consensus 15 ~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------ 49 (171)
.|.||||+=| +||+||+|+..+++|+++.+-.|++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 3999999954 9999999999999999999888874
Q ss_pred --------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.....+.++|+|||.+++.+
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 45667889999999998764
No 153
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00064 Score=57.12 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=56.9
Q ss_pred HHHcCCCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 8 IEKARVSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
...|+.+||++|||.-+ .|+++|.|+.-+...++++++.|+.
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 45789999999999974 4799999999999999999988765
Q ss_pred ----------------------------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ----------------------------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ----------------------------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
++++...+.|||||+++-.+.+..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 678889999999999987765554
No 154
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00015 Score=56.37 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHcC--CCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhc-----hH---------
Q 042963 4 VSFLIEKAR--VSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAG-----LQ--------- 49 (171)
Q Consensus 4 ~~~ll~~l~--l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~g-----l~--------- 49 (171)
...+++.|. ++||.+.||||. .++|||.-++.++++++++.+-- .+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 457888888 999999999992 45999999999999999976432 11
Q ss_pred -------------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
...+++-++|+|||+++|--
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEee
Confidence 67889999999999999854
No 155
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.45 E-value=0.00056 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.7
Q ss_pred eEEEeCC---------------eEEEEcCCHHHHHHHHHH
Q 042963 18 DVLFLRL---------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 18 rVLDIGc---------------~VtgId~S~~~~~~A~~~ 42 (171)
+|||||| +++++|+++++++.+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 40 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA 40 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 5788886 899999999999999843
No 156
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.43 E-value=0.00017 Score=57.81 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=44.7
Q ss_pred hHHHHHHHHcCCCCC-CeEEEeCC-----------eEEEEcCCHHHHHHHHHHHHHh-------------------chHH
Q 042963 2 RKVSFLIEKARVSKG-HDVLFLRL-----------DYTGITLSEEQLKYTEMKVKEA-------------------GLQQ 50 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g-~rVLDIGc-----------~VtgId~S~~~~~~A~~~~~~~-------------------gl~~ 50 (171)
+=++.+++.+..+|+ ..|-|+|| .|+..|+-..--...--.++.. ++..
T Consensus 166 nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~d 245 (325)
T KOG3045|consen 166 NPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLAD 245 (325)
T ss_pred ChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHH
Confidence 347888999988776 45779999 4555554322111111001111 1118
Q ss_pred HHHHHHhccccCcEEEEEcccC
Q 042963 51 FFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 51 ~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
|+.+++|+|||||.++|..+..
T Consensus 246 f~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred HHHHHHHHhccCceEEEEehhh
Confidence 9999999999999999976543
No 157
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.37 E-value=0.00022 Score=59.98 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=57.1
Q ss_pred HHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------
Q 042963 9 EKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------ 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------ 49 (171)
-+.++++++.++|+|| +++|+|.++.++..+...+...++.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 3457899999999996 8999999999999999888777665
Q ss_pred ------------HHHHHHHhccccCcEEEEEcccCCC
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
..+++++|++||||.+....+..+.
T Consensus 184 ~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 184 FLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred EEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 7899999999999999988776653
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.36 E-value=0.0014 Score=50.71 Aligned_cols=43 Identities=9% Similarity=-0.115 Sum_probs=35.7
Q ss_pred HHHHcC-CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 7 LIEKAR-VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 7 ll~~l~-l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+++.+. ..++.+|||+|| +|++||++++.++.|+++++..+++
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~ 102 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG 102 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 455443 367899999997 8999999999999999998877754
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.32 E-value=0.0011 Score=55.91 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 6 FLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.+.+.++..++.+|||+|| +|+|||+|+..++.|+++++..+++
T Consensus 224 ~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 224 TARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD 281 (374)
T ss_pred HHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3445555567789999998 8999999999999999999887764
No 160
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.0012 Score=52.06 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
+--.+.+-...++||||. +|+++|+.++..+.+....+.+|+.
T Consensus 65 l~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~ 144 (237)
T KOG1663|consen 65 LQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD 144 (237)
T ss_pred HHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc
Confidence 334456667889999993 9999999999999999988888765
Q ss_pred -------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++++.+.||+||.+++..
T Consensus 145 ~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 145 GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 67889999999999999865
No 161
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.26 E-value=0.00069 Score=54.07 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
-++.+++.+++.++++|||||| +|+++|+++.+++.++++..
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC
Confidence 4678889999999999999997 89999999999999987753
No 162
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.24 E-value=0.00038 Score=53.49 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHH
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~ 42 (171)
++||.||||+|| ++.|||++++.+..+.++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc
Confidence 689999999998 899999999998877655
No 163
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.21 E-value=0.001 Score=58.40 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
..+..+||||| .++|||++..-+..|.+++.+.++.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45788999998 8999999999999998888777654
Q ss_pred -----------------HHHHHHHhccccCcEEEEE
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.++++|||||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 6777888888888887764
No 164
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.21 E-value=0.0012 Score=53.07 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcCC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g~ 112 (171)
..++++.++|||||.|++..+.... .|. ....-||. .-.+.+.+.++++++|+
T Consensus 180 ~al~ni~~lLkpGG~Lil~~~l~~t-~Y~--------vG~~~F~~-l~l~ee~v~~al~~aG~ 232 (256)
T PF01234_consen 180 RALRNISSLLKPGGHLILAGVLGST-YYM--------VGGHKFPC-LPLNEEFVREALEEAGF 232 (256)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESS-S-EEE--------ETTEEEE----B-HHHHHHHHHHTTE
T ss_pred HHHHHHHHHcCCCcEEEEEEEcCce-eEE--------ECCEeccc-ccCCHHHHHHHHHHcCC
Confidence 5678899999999999987654332 110 01111331 22357788889999884
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.00096 Score=55.58 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHH-HHcCCCCCCeEEEe--------------CCeEEEEcCCHHHHHHHHHHHHHhchH------------------
Q 042963 3 KVSFLI-EKARVSKGHDVLFL--------------RLDYTGITLSEEQLKYTEMKVKEAGLQ------------------ 49 (171)
Q Consensus 3 k~~~ll-~~l~l~~g~rVLDI--------------Gc~VtgId~S~~~~~~A~~~~~~~gl~------------------ 49 (171)
|+++++ ..+.+++|+.|||= |++|+|.|++..|++-|+.+.+..+++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCC
Confidence 344444 56689999999993 469999999999999999999887643
Q ss_pred ---------------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ---------------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---------------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+.++||+||++++..
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 77899999999999998854
No 166
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.19 E-value=0.0014 Score=52.59 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=41.9
Q ss_pred CCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------------H
Q 042963 15 KGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------Q 50 (171)
Q Consensus 15 ~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------~ 50 (171)
...++||||+ +|++-++|..|...-++ .|+. .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCCeEEehhhhhccCCceEEEeehhhhhccCCHHH
Confidence 4678999995 99999999999765543 3332 7
Q ss_pred HHHHHHhccccCcEEEEEcc
Q 042963 51 FFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 51 ~~~~~~r~LkpgG~l~i~~i 70 (171)
.++.+++.|+|+|++++.-+
T Consensus 170 LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEE
Confidence 89999999999999988543
No 167
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.13 E-value=0.0025 Score=52.05 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..|.||||+=| +|++||.|+..+++|+++++..|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 46899999754 8999999999999999999888765
No 168
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.12 E-value=0.0036 Score=51.08 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------
Q 042963 14 SKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------- 49 (171)
...-|||||.| +|.-.|.|+..++..++.+++.|++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999997 8999999999999999999998876
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcccCCCcc------cccccCccchhhhcccCCCcCCCHHHHHHHH
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFSSVPDQC------YDEHRLSPGFMKEYVFPGGCLPSLNRITSTM 107 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i~~~~~~------~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~ 107 (171)
..++.+.+.+.|||.++.......... ...++...+|+.+ .-|..|+.+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR-------rRsq~EmD~Lv 286 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR-------RRSQAEMDQLV 286 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE-------ecCHHHHHHHH
Confidence 356778999999999976432111110 1111222344433 35788999999
Q ss_pred HhcCC
Q 042963 108 TSSSR 112 (171)
Q Consensus 108 ~~~g~ 112 (171)
+.+||
T Consensus 287 ~~aGF 291 (311)
T PF12147_consen 287 EAAGF 291 (311)
T ss_pred HHcCC
Confidence 99884
No 169
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.02 E-value=0.0015 Score=49.92 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEM 41 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~ 41 (171)
++.+.+.+ +++++|||||| +++|||+|+++++.|++
T Consensus 4 ~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 4 LESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence 55666665 58899999998 67999999999998865
No 170
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.01 E-value=0.0052 Score=47.83 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~ 43 (171)
+..+++.+++++++..+|||| +++||++.+...+.|+...
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHH
Confidence 577899999999999999996 5999999999998887654
No 171
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.97 E-value=0.002 Score=50.75 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=52.4
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
..+.+..++.+..+|||||+ ++|..|+ ++.++.+++ ...++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f~~~P~~D~~~l~ 165 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFFDPLPVADVYLLR 165 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TTTCCSSESEEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHHhhhccccceeee
Confidence 45667788889999999993 9999999 888888887 22222
Q ss_pred ------------HHHHHHHhccccC--cEEEEEcccCCC
Q 042963 50 ------------QFFGCCESLLAEH--GLLLLQFSSVPD 74 (171)
Q Consensus 50 ------------~~~~~~~r~Lkpg--G~l~i~~i~~~~ 74 (171)
.+++++++.|+|| |+++|.+...++
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 8899999999999 999998876554
No 172
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.96 E-value=0.0032 Score=49.28 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHh----------chH--------------------
Q 042963 15 KGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEA----------GLQ-------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~----------gl~-------------------- 49 (171)
.-.+.||.|| +|.-||..+..++.|++..... |++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4689999996 9999999999999999765441 222
Q ss_pred -------HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcCC
Q 042963 50 -------QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g~ 112 (171)
.|++.|...|+|+|.+++-.-..+... ..+...+ .+..-+...+.++++++|.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~D---------sSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEED---------SSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTT---------TEEEEEHHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCcc---------CeeecCHHHHHHHHHHcCC
Confidence 899999999999999998653332211 0010111 1223456788899999984
No 173
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.90 E-value=0.0036 Score=51.90 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCCCCeEEEeCC--------------------eEEEEcCCHHHHHHHHHHHH
Q 042963 13 VSKGHDVLFLRL--------------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 13 l~~g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~~~ 44 (171)
+.++.+|+|+|| +.++||+|.++++.+.++..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 467889999997 59999999999999998887
No 174
>PRK04148 hypothetical protein; Provisional
Probab=96.84 E-value=0.0027 Score=46.15 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHH
Q 042963 5 SFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~ 42 (171)
+.+.+.+.-..+.+|||||| +|+++|++++.++.|+++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 34556666677899999996 999999999988877655
No 175
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.82 E-value=0.0057 Score=49.83 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
....|+.++|++|||..+ .|++.|+++.-+...++++++.|+.
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 345679999999999985 8999999999999999999888764
No 176
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.80 E-value=0.018 Score=44.70 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHHHHhccccCcEEEEEcccCCCccccc--ccCccchhhhcccCCCcCCCHHHHHHHHHhcC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVPDQCYDE--HRLSPGFMKEYVFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~--~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g 111 (171)
.+|+.+.++|+|||.|+++.=...+..+.. ...-+.+++.. =|..-+-..+++.+...++|
T Consensus 122 ~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 122 GLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred HHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHHHHHHHCC
Confidence 789999999999999998753333322211 01122333332 23345677888888888887
No 177
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.78 E-value=0.0019 Score=48.69 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHHHHcC-CCCC--CeEEEeCC-----------------eEEEEcCCHH
Q 042963 3 KVSFLIEKAR-VSKG--HDVLFLRL-----------------DYTGITLSEE 34 (171)
Q Consensus 3 k~~~ll~~l~-l~~g--~rVLDIGc-----------------~VtgId~S~~ 34 (171)
|+..+.++.+ ++++ .+|||+|| +|+|||+.+.
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 8999999999 7765 99999996 8999999977
No 178
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.74 E-value=0.0031 Score=52.47 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 12 RVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.+-.|.+|||||| +|++||.|.-. +.|++.+...+++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~ 108 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLE 108 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCcc
Confidence 4678999999998 99999999766 9999998887765
No 179
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0061 Score=46.78 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.0
Q ss_pred HcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 10 KARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
..+.=.|.+|+|+|| +|+|||++++.++.+++++.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 446667889999997 999999999999999999876
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.69 E-value=0.0087 Score=45.43 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHHHcCCCCCCeEEEeCC----------------e---------EEEEcCCHHHHHHHHHHHHHhchH
Q 042963 5 SFLIEKARVSKGHDVLFLRL----------------D---------YTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc----------------~---------VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.-++..++.++|+.|||-=| . +.|.|+++++++.|+++++..|+.
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence 45678889999999999876 4 679999999999999999888764
No 181
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.68 E-value=0.00045 Score=53.82 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCC-CCeEEEeCC-------------eEEEEcCCHHHHHHHHHHHHHhchH-------------------
Q 042963 3 KVSFLIEKARVSK-GHDVLFLRL-------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~~-g~rVLDIGc-------------~VtgId~S~~~~~~A~~~~~~~gl~------------------- 49 (171)
=++.+++.+.-.| +..|-|.|| +|...|+-..--......++..+++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~ 138 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWP 138 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HH
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcH
Confidence 3677888887555 579999999 3666665432110000011111121
Q ss_pred HHHHHHHhccccCcEEEEEcccC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.|++|..|+|||||.+.|..+..
T Consensus 139 ~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 139 DFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGG
T ss_pred HHHHHHHheeccCcEEEEEEecc
Confidence 89999999999999999986544
No 182
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.67 E-value=0.0044 Score=51.44 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh-chH
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA-GLQ 49 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~-gl~ 49 (171)
++.+|||||| +++|+|+++..++.|+++++.. ++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~ 165 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN 165 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc
Confidence 5789999996 8999999999999999999887 564
No 183
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.012 Score=50.78 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.++.+++.++..++++|||+=| +|+|+|++++.++.|+++++..++.
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 4678889999999999999876 9999999999999999999988876
No 184
>PHA03412 putative methyltransferase; Provisional
Probab=96.53 E-value=0.0047 Score=49.15 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=26.8
Q ss_pred CCCeEEEeCC-------------------eEEEEcCCHHHHHHHHHHHH
Q 042963 15 KGHDVLFLRL-------------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 15 ~g~rVLDIGc-------------------~VtgId~S~~~~~~A~~~~~ 44 (171)
.+.+|||+|| +|+|||+++.+++.|+++..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 4779999997 69999999999999998853
No 185
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.53 E-value=0.019 Score=47.29 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCCCCeEEEeC----------------CeEEEEcCCHHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLR----------------LDYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIG----------------c~VtgId~S~~~~~~A~~~~~~ 45 (171)
++.+++.+.+++|..++|.= ++|+|+|.+++.++.|+++.+.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 67899999999999999964 3899999999999999987654
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.48 E-value=0.017 Score=44.29 Aligned_cols=36 Identities=6% Similarity=-0.214 Sum_probs=32.0
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
-+|.+|||++| +|++||.++..++.++++++..+++
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~ 98 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG 98 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc
Confidence 46899999997 8999999999999999998877654
No 187
>PLN02823 spermine synthase
Probab=96.47 E-value=0.0089 Score=49.94 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=44.5
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh-------chH----------------------
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA-------GLQ---------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~-------gl~---------------------- 49 (171)
...+||.||+ +|+.||+++++++.|++..... .+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4469999994 8999999999999999876421 111
Q ss_pred -----------------HHHH-HHHhccccCcEEEEEcc
Q 042963 50 -----------------QFFG-CCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -----------------~~~~-~~~r~LkpgG~l~i~~i 70 (171)
++++ .+.+.|+|||.++++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 4777 89999999999988753
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.39 E-value=0.016 Score=49.23 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=43.8
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
++.+|||++| +|+++|++++.++.++++++..+++
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs 136 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGS 136 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCC
Confidence 4579999996 6999999999999999998765543
Q ss_pred --HHHHHHHhccccCcEEEEE
Q 042963 50 --QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 --~~~~~~~r~LkpgG~l~i~ 68 (171)
.++....+.++|||.++++
T Consensus 137 ~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 137 PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred cHHHHHHHHHHhcCCCEEEEE
Confidence 4556656778888888886
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.38 E-value=0.0084 Score=50.08 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 8 IEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++...--.|..|||+|| +|.+|+.| +|.++|++.++...+.
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA 225 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc
Confidence 34444456889999997 99999987 6999999998766543
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.012 Score=48.09 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch-------H-------------------
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL-------Q------------------- 49 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl-------~------------------- 49 (171)
...| .+||=||- ++|-|||.++.++.+++....... +
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3445 59999991 999999999999999998643320 0
Q ss_pred ------------------HHHHHHHhccccCcEEEEE
Q 042963 50 ------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.|++.|++.|+|+|.++.+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8999999999999999988
No 191
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.35 E-value=0.0074 Score=50.68 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++.+++.++..+ .+|||++| +|+|||+|+++++.|+++++..+++
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 455666666544 47999998 8999999999999999999887764
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0098 Score=47.89 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
-++.+++.+++.++++|||||+ +||+|++++.+++..+++..
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc
Confidence 4788999999999999999994 99999999999999988864
No 193
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.21 E-value=0.024 Score=44.67 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=42.1
Q ss_pred HHHHHH----HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh-chH-----------
Q 042963 3 KVSFLI----EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA-GLQ----------- 49 (171)
Q Consensus 3 k~~~ll----~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~-gl~----------- 49 (171)
|+.-.+ +.+.+++|.+||-+|+ .|.+|+.|+......-..++++ ++-
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK 136 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHH
Confidence 555544 5578999999999995 8999999985443333333322 110
Q ss_pred ----------------------HHHHHHHhccccCcEEEEE
Q 042963 50 ----------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ----------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+...+...||+||.+++.
T Consensus 137 Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp GTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 4566777899999999874
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.21 E-value=0.0081 Score=46.58 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+++|++|||.-| .|+++|+++..+++.+++++..+++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 789999999875 8999999999999999999887765
No 195
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.20 E-value=0.021 Score=47.64 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------- 49 (171)
++..+++||++|+=+|+ +|+++|.|++-.+.|++.-+..-+.
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 55689999999999994 9999999999999999874322111
Q ss_pred -HHHHHHHhccccCcEEEEEccc
Q 042963 50 -QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.-+....+.|++||++++..+.
T Consensus 239 ~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHHHHHHHhcCCEEEEECCC
Confidence 4466778999999999987765
No 196
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.20 E-value=0.0063 Score=44.54 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=39.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------------------------HHHHHHHh
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQ-----------------------------------------------QFFGCCES 57 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~-----------------------------------------------~~~~~~~r 57 (171)
+|+|+|+-++.++.++++.++.++. ..++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6999999999999999999988654 67888999
Q ss_pred ccccCcEEEEEcccCC
Q 042963 58 LLAEHGLLLLQFSSVP 73 (171)
Q Consensus 58 ~LkpgG~l~i~~i~~~ 73 (171)
.|+|||++.+......
T Consensus 81 lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGH 96 (140)
T ss_dssp HEEEEEEEEEEE--ST
T ss_pred hhccCCEEEEEEeCCC
Confidence 9999999998765443
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.14 E-value=0.002 Score=51.16 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=43.1
Q ss_pred HcCCCCCCeEEEeC--------------C-eEEEEcCCHHHHHHHHHHHHHhc-----hH--------------------
Q 042963 10 KARVSKGHDVLFLR--------------L-DYTGITLSEEQLKYTEMKVKEAG-----LQ-------------------- 49 (171)
Q Consensus 10 ~l~l~~g~rVLDIG--------------c-~VtgId~S~~~~~~A~~~~~~~g-----l~-------------------- 49 (171)
..+++.|.+|||.- + +|..|+-+++-++.|.-+-=..+ +.
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 34567899999975 2 89999999988887764411111 11
Q ss_pred -----------------HHHHHHHhccccCcEEEE
Q 042963 50 -----------------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i 67 (171)
.++++++|+|||||+++-
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 789999999999999964
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.98 E-value=0.016 Score=48.83 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++.+.+.+... +.+|||++| +|+|||+|+.+++.|+++++..+++
T Consensus 196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 44555555543 368999998 8999999999999999999887764
No 199
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.92 E-value=0.012 Score=45.42 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=23.0
Q ss_pred CCCCCCeEEEeCC-------------------------eEEEEcCCHHHHHHHHH
Q 042963 12 RVSKGHDVLFLRL-------------------------DYTGITLSEEQLKYTEM 41 (171)
Q Consensus 12 ~l~~g~rVLDIGc-------------------------~VtgId~S~~~~~~A~~ 41 (171)
.-.+--||+..|| +|+|.|+|+..++.|++
T Consensus 28 ~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 28 RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3346689999998 89999999999999985
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.84 E-value=0.018 Score=45.90 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=44.7
Q ss_pred CCCCeEEEeC----------------CeEEEEcCCHHHHHHHHHHHHHh--chH--------------------------
Q 042963 14 SKGHDVLFLR----------------LDYTGITLSEEQLKYTEMKVKEA--GLQ-------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIG----------------c~VtgId~S~~~~~~A~~~~~~~--gl~-------------------------- 49 (171)
+...+||=|| .+|+.||+++..++.|++..... ++.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3678999999 28999999999999999875432 111
Q ss_pred -----------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 89999999999999999875
No 201
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.82 E-value=0.07 Score=43.84 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~~~ 45 (171)
++.+++.|.++|+...+|.= ++++|+|-+++.++.|+++...
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 57889999999999999963 3799999999999999998754
No 202
>PRK00536 speE spermidine synthase; Provisional
Probab=95.81 E-value=0.037 Score=44.71 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCCCeEEEeC--------------CeEEEEcCCHHHHHHHHHHHHHhc--h-------------------H---------
Q 042963 14 SKGHDVLFLR--------------LDYTGITLSEEQLKYTEMKVKEAG--L-------------------Q--------- 49 (171)
Q Consensus 14 ~~g~rVLDIG--------------c~VtgId~S~~~~~~A~~~~~~~g--l-------------------~--------- 49 (171)
+.-.|||=|| .+|+-|||+++.++.+++...... + +
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~~ 150 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEPD 150 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCCC
Confidence 3458999999 289999999999999999533211 1 1
Q ss_pred -HHHHHHHhccccCcEEEEEc
Q 042963 50 -QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+++.|+|||.++.|.
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hHHHHHHHHhcCCCcEEEECC
Confidence 78999999999999999875
No 203
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.81 E-value=0.043 Score=44.61 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=42.9
Q ss_pred HcCCCCCC---eEEEeCC------------------eEEEEcCCHHHHHHHHHHHH-HhchH------------------
Q 042963 10 KARVSKGH---DVLFLRL------------------DYTGITLSEEQLKYTEMKVK-EAGLQ------------------ 49 (171)
Q Consensus 10 ~l~l~~g~---rVLDIGc------------------~VtgId~S~~~~~~A~~~~~-~~gl~------------------ 49 (171)
.+....++ ||+=||+ .|++||++++.++.|++.++ ..|++
T Consensus 112 ~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~ 191 (276)
T PF03059_consen 112 ALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLK 191 (276)
T ss_dssp -HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG--
T ss_pred HHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccc
Confidence 34445554 9999995 69999999999999999887 44444
Q ss_pred -------------------HHHHHHHhccccCcEEEEE
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
++++.+.+.++||.++++-
T Consensus 192 ~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 192 EYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7889999999999998874
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.79 E-value=0.021 Score=46.29 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCCCeEEEeC--------------CeEEEEcCCHHHHHHHHHHHHHhc
Q 042963 4 VSFLIEKARVSKGHDVLFLR--------------LDYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIG--------------c~VtgId~S~~~~~~A~~~~~~~g 47 (171)
++.+.++++++|++.||||| .+|+++++++.|++..+++.+...
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 57889999999999999999 399999999999999998875433
No 205
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.75 E-value=0.03 Score=47.00 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
-++.+++.++.+++ +|||+=| +|+|||+++++++.|+++++..+++
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGID 244 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 46778899998887 8999987 9999999999999999999988765
No 206
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.72 E-value=0.021 Score=49.52 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCeEEEeCC--------------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------
Q 042963 16 GHDVLFLRL--------------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------- 49 (171)
Q Consensus 16 g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------- 49 (171)
+..|||||| +|++|+-++..+...+++++..+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 578999995 9999999999888888877766664
Q ss_pred -----------HHHHHHHhccccCcEEE
Q 042963 50 -----------QFFGCCESLLAEHGLLL 66 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~ 66 (171)
+.+....|.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 66777789999999875
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.71 E-value=0.047 Score=44.59 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.+.+++.+..+++.+|||-.| +++|+|+++.++..|+-++.-.+.
T Consensus 35 ~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 35 VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 356777889999999999987 699999999999999877654443
No 208
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.63 E-value=0.042 Score=42.38 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=14.5
Q ss_pred HHHHhccccCcEEEEEcccCCC
Q 042963 53 GCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 53 ~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
.-....++|+|.++.-.|...+
T Consensus 168 ~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 168 LFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HHhhhhcCCCcEEEEEEecCCc
Confidence 3345667888888877666543
No 209
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.62 E-value=0.03 Score=44.80 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=40.0
Q ss_pred HHHHHHHc--CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchHHHHHHHHhccccCcEE
Q 042963 4 VSFLIEKA--RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQQFFGCCESLLAEHGLL 65 (171)
Q Consensus 4 ~~~ll~~l--~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l 65 (171)
++.+.+.+ .+.+.++|||||| .++|+|++..+++..+... ..|++.+..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l-------------~~l~~~~~~ 158 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFL-------------AVLGVPHDA 158 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHH-------------HHTT-CEEE
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHH-------------HhhCCCcce
Confidence 44455443 3566899999999 8999999999999877665 668889999
Q ss_pred EEEcccCC
Q 042963 66 LLQFSSVP 73 (171)
Q Consensus 66 ~i~~i~~~ 73 (171)
.+.++...
T Consensus 159 ~v~Dl~~~ 166 (251)
T PF07091_consen 159 RVRDLLSD 166 (251)
T ss_dssp EEE-TTTS
T ss_pred eEeeeecc
Confidence 88887654
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.011 Score=43.71 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=34.1
Q ss_pred cCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 11 ARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 11 l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.+--.|+.++|+|| .|.|+|+.++.++.+++++.+..++
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence 34457899999998 8999999999999999999887765
No 211
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.061 Score=41.84 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=25.5
Q ss_pred HHHHHHHHcC-CCCCCeEEEeCC-----------------eEEEEcCCH
Q 042963 3 KVSFLIEKAR-VSKGHDVLFLRL-----------------DYTGITLSE 33 (171)
Q Consensus 3 k~~~ll~~l~-l~~g~rVLDIGc-----------------~VtgId~S~ 33 (171)
|+..+.++-+ +++|++|+|+|+ .|+|||+-+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 7778888877 588999999995 489998865
No 212
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.45 E-value=0.0089 Score=52.03 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=16.9
Q ss_pred HHHHHHHhccccCcEEEEEc
Q 042963 50 QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~ 69 (171)
.++-++.|+|+|||.+++..
T Consensus 200 ~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 200 FLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ceeehhhhhhccCceEEecC
Confidence 56778999999999998754
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.40 E-value=0.1 Score=39.89 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=42.5
Q ss_pred eEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH------------------------------HH
Q 042963 18 DVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------QF 51 (171)
Q Consensus 18 rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~------------------------------~~ 51 (171)
+++|||. +||-||.+..-+.+.+..+.+.|++ .+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 8999994 9999999999999999888887765 56
Q ss_pred HHHHHhccccCcEEEEE
Q 042963 52 FGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 52 ~~~~~r~LkpgG~l~i~ 68 (171)
++-+...|+|||+++..
T Consensus 131 ~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 131 LELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 67777888899988764
No 214
>PLN02672 methionine S-methyltransferase
Probab=95.39 E-value=0.021 Score=54.30 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh
Q 042963 16 GHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 16 g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~ 46 (171)
+.+|||||| +|+|+|+|+++++.|+++++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n 165 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN 165 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 569999997 7999999999999999998764
No 215
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.14 E-value=0.056 Score=44.24 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=16.5
Q ss_pred eEEEEcCCHHHHHHHHHH
Q 042963 25 DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~ 42 (171)
+|+|.|+|+..++.|++-
T Consensus 149 ~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 149 KVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEECCHHHHHHHHhC
Confidence 799999999999999864
No 216
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.08 E-value=0.023 Score=38.79 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=13.9
Q ss_pred HHHHHHHhccccCcEEEEEc
Q 042963 50 QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~ 69 (171)
..++.+...|+|||.+++++
T Consensus 86 ~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 86 RDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHcCCCeEEEEeC
Confidence 45666777788888877765
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.03 E-value=0.1 Score=40.64 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=27.2
Q ss_pred EEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 19 VLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 19 VLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
|.|||| +|++.|+++.-++.|+++++..|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~ 47 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE 47 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 689998 8999999999999999999998865
No 218
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.90 E-value=0.019 Score=45.00 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.5
Q ss_pred CeEEEeCC-------------eEEEEcCCHHHHHHHHHHHHHhch--------H------------------HHHHHHHh
Q 042963 17 HDVLFLRL-------------DYTGITLSEEQLKYTEMKVKEAGL--------Q------------------QFFGCCES 57 (171)
Q Consensus 17 ~rVLDIGc-------------~VtgId~S~~~~~~A~~~~~~~gl--------~------------------~~~~~~~r 57 (171)
-|+||||| .||.||+.+..-..-+.-.=+..+ . +.++.+++
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~ 132 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK 132 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence 69999996 899999997322111111111111 1 78899999
Q ss_pred ccccCcE
Q 042963 58 LLAEHGL 64 (171)
Q Consensus 58 ~LkpgG~ 64 (171)
.|+|+|.
T Consensus 133 fL~~~g~ 139 (219)
T PF11968_consen 133 FLKPPGL 139 (219)
T ss_pred HhCCCCc
Confidence 9999999
No 219
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.87 E-value=0.11 Score=37.70 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCCCCCeEEEeCC--------------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 12 RVSKGHDVLFLRL--------------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 12 ~l~~g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
...+..+|+|+|| +|+|||.++.+++.|+++.++.+
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4488999999996 89999999999999999987665
No 220
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.80 E-value=0.13 Score=38.71 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=41.4
Q ss_pred cCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc--hH-----------------------
Q 042963 11 ARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG--LQ----------------------- 49 (171)
Q Consensus 11 l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g--l~----------------------- 49 (171)
....++.+|||+|| +|+.-|..+ .++..+.+++..+ ..
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 45678999999995 899999998 8888888887643 11
Q ss_pred -----------------HHHHHHHhccccCcEEEEEc
Q 042963 50 -----------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+.+.|+|+|.+++..
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 56777888888888866543
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.73 E-value=0.037 Score=45.69 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=31.2
Q ss_pred HHHHHHHcCCCCCCeEEEe--C--------------CeEEEEcCCHHHHHHHHHHHH
Q 042963 4 VSFLIEKARVSKGHDVLFL--R--------------LDYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDI--G--------------c~VtgId~S~~~~~~A~~~~~ 44 (171)
++.+++.|.++++...+|. | |+|+|+|.++++++.|+++..
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 6788999999999999995 3 599999999999999986653
No 222
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.72 E-value=0.1 Score=44.72 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.1
Q ss_pred HcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 10 KARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
.++++||+||||.-+ .|++.|.+.+-+...+.++.+.|+.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ 292 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT 292 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC
Confidence 468999999999985 7999999999999999998887765
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.67 E-value=0.12 Score=43.75 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=45.8
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH---------------------------
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ--------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~--------------------------- 49 (171)
++.-.+||=+|- +||-+|++++|++.++++..-..++
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 455678999992 9999999999999999653322221
Q ss_pred ---------------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ---------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+|..-+.+.|+++|.+++|.
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 78888999999999999985
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.14 Score=41.61 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+..++..|+++||.+|||-|. ++...|.-+.-.+.|++..++.|+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 578899999999999999993 8999999999999999998888765
No 225
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.65 E-value=0.17 Score=42.03 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=53.6
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh-------c-hH-----------
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA-------G-LQ----------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~-------g-l~----------- 49 (171)
+.+++.++++|.+||=+|+ +|+.+|++++-++.|++.-.+. . ..
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhcc
Confidence 3577889999999999995 9999999999999999742110 0 00
Q ss_pred --------------HHHHHHHhccccCcEEEEEcccCCCc
Q 042963 50 --------------QFFGCCESLLAEHGLLLLQFSSVPDQ 75 (171)
Q Consensus 50 --------------~~~~~~~r~LkpgG~l~i~~i~~~~~ 75 (171)
.-++..-..+++||.+++..+..+..
T Consensus 240 ~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred ccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 44566678899999988877766543
No 226
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.65 E-value=0.049 Score=45.66 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=25.8
Q ss_pred HHHHHHHHcC--------CCCCCeEEEeCC--------------eEEEEcCCH
Q 042963 3 KVSFLIEKAR--------VSKGHDVLFLRL--------------DYTGITLSE 33 (171)
Q Consensus 3 k~~~ll~~l~--------l~~g~rVLDIGc--------------~VtgId~S~ 33 (171)
|++.+++... +.+|+++||||| +|++||.++
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~ 243 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP 243 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh
Confidence 7888888776 469999999996 899999543
No 227
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.30 E-value=0.07 Score=38.17 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=26.7
Q ss_pred eEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 18 DVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 18 rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
.|||||| +|+++|+++++.+.++++++..++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 4899996 699999999999999999876553
No 228
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.08 E-value=0.25 Score=41.32 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 13 VSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
++.=...+|+|. +|-||+.....+..+..... .|++
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTPKGDAIWMKWILHDWTDED 253 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCcceecccccccCCCcCeEEEEeecccCChHH
Confidence 444589999993 89999999999988887775 4543
Q ss_pred --HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 --QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 --~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.++++|+..|+|||.+++-+...+
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 899999999999999988765443
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.23 Score=38.73 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh-chH----------------------
Q 042963 9 EKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA-GLQ---------------------- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~-gl~---------------------- 49 (171)
+.+.+++|++||=+|+ .|.||+.|+.....--..++++ ++-
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEE
Confidence 4467999999999994 6999999988765555444433 211
Q ss_pred -----------HHHHHHHhccccCcEEEEE
Q 042963 50 -----------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -----------~~~~~~~r~LkpgG~l~i~ 68 (171)
.+..++...||+||.+++.
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 4456778889999977653
No 230
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.00 E-value=0.052 Score=44.20 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=46.0
Q ss_pred CCCCeEEEeCC------------eEEEEcCCHHHHHHHHHHHHH-----hchH---------------------------
Q 042963 14 SKGHDVLFLRL------------DYTGITLSEEQLKYTEMKVKE-----AGLQ--------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc------------~VtgId~S~~~~~~A~~~~~~-----~gl~--------------------------- 49 (171)
..|..+||+|| .+.|-|++...+..|++.-.. ..+.
T Consensus 44 ~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~ 123 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRE 123 (293)
T ss_pred CCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHH
Confidence 45999999997 689999999999887754220 0000
Q ss_pred HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
..++++.|.|+|||...+..|...
T Consensus 124 ~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 124 RALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHhcCCCceEEEEehhh
Confidence 778999999999999998777553
No 231
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=93.89 E-value=0.23 Score=37.84 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
-+|.+|||+=| +|+.||.+++.+...+++++..++.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~ 91 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE 91 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 48999999953 9999999999999999999887754
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.84 E-value=0.16 Score=40.73 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~ 44 (171)
-++.+++.+++.+++.|||||. +|++||+++.+++..+++..
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh
Confidence 4678999999999999999993 99999999999998887653
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.46 Score=36.56 Aligned_cols=54 Identities=13% Similarity=-0.018 Sum_probs=36.2
Q ss_pred cCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch--HHHHHHHHhccccCcE
Q 042963 11 ARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL--QQFFGCCESLLAEHGL 64 (171)
Q Consensus 11 l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl--~~~~~~~~r~LkpgG~ 64 (171)
+.-..-.-+||||| ...+.|++++.++...+-++..+. +.+-..+...|++++.
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~V 111 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESV 111 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCc
Confidence 33344778999998 578999999999988777655443 2233344445555555
No 234
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.69 E-value=0.52 Score=40.04 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=45.2
Q ss_pred CCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 16 GHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 16 g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
+-+|||.-| +|+++|++++.++.++++++..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 359999885 5999999999999999998765532
Q ss_pred ---HHHHHHHhccccCcEEEEEc
Q 042963 50 ---QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+.+.+++||.+++..
T Consensus 125 s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CcHHHHHHHHHhcccCCEEEEEe
Confidence 67788889999999998864
No 235
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.50 E-value=0.31 Score=40.89 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=48.7
Q ss_pred CCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 13 VSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
.++|++|||.=| +|+++|+++..+++.+++++..+++
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 466999999632 5999999999999999999877665
Q ss_pred ----HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ----QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.++....+.+++||.+-.+..+..
T Consensus 266 ~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 266 KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 567777788888888877765544
No 236
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.084 Score=46.23 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..+-+.+++.++..+||+=| +|.||++|++.++.|+.+++..|++
T Consensus 373 s~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 373 STIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc
Confidence 34568899999999999988 9999999999999999999998887
No 237
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.36 E-value=0.12 Score=41.84 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
.+++.++..|+|||.|++-
T Consensus 222 ~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 222 RILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHhCCCCEEEEc
Confidence 7788999999999999874
No 238
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.25 E-value=0.14 Score=39.78 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHhccccCcEEEEEcc
Q 042963 50 QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++++++.|||||.+++.+-
T Consensus 147 ~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 147 KVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred HHHHHHHHhcCCCcEEEEEec
Confidence 788999999999999998663
No 239
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.12 E-value=0.23 Score=40.23 Aligned_cols=69 Identities=9% Similarity=-0.061 Sum_probs=47.8
Q ss_pred HHHHHHcCCC-CCCeEEEeCC-------------------eEEEEcCCHHHHHHHHHHHHHhch--H-------------
Q 042963 5 SFLIEKARVS-KGHDVLFLRL-------------------DYTGITLSEEQLKYTEMKVKEAGL--Q------------- 49 (171)
Q Consensus 5 ~~ll~~l~l~-~g~rVLDIGc-------------------~VtgId~S~~~~~~A~~~~~~~gl--~------------- 49 (171)
.+..+.|--. .=...||||| +|+=||+.+--+++++.......- .
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 3444444333 2257999996 899999999999999988654321 1
Q ss_pred ----------------------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ----------------------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ----------------------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
.+++.+.+.|.||..++|+..+..
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 788999999999999999877654
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.06 E-value=0.28 Score=39.72 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 15 KGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 15 ~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
...+|||+|| ++++||.|+.|.+.++...+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4469999996 899999999999999988654
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.87 E-value=0.28 Score=40.35 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHh-chH
Q 042963 16 GHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEA-GLQ 49 (171)
Q Consensus 16 g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~-gl~ 49 (171)
.-++||||+ +++|.|+++..++.|+++++.. +++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~ 153 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE 153 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc
Confidence 568999994 9999999999999999999877 665
No 242
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=92.63 E-value=0.6 Score=35.47 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=54.4
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhch--------H----------
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGL--------Q---------- 49 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl--------~---------- 49 (171)
+.+....+...|.-|||+|- .++.|+.|++.+....++....++ .
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 45677789999999999993 899999999999888876543311 1
Q ss_pred -------------------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 -------------------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 -------------------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
++++.+...|.+||.++-.+.+.
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 78899999999999998766653
No 243
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.3 Score=38.89 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCC-CCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHH------HhchH-----------
Q 042963 3 KVSFLIEKARVS-KGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVK------EAGLQ----------- 49 (171)
Q Consensus 3 k~~~ll~~l~l~-~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~------~~gl~----------- 49 (171)
|+...++.-++. +|..+||||+ +|+|||.+..|+.+--+.-. +.++.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 788888888875 6789999994 99999999999977543311 01110
Q ss_pred -------------HHHHHHHhccccCcEEEE
Q 042963 50 -------------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 50 -------------~~~~~~~r~LkpgG~l~i 67 (171)
.++-.+..+++|++-++.
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 567788888999888765
No 244
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.40 E-value=0.58 Score=39.53 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHHhccccCcEEEEEcccCCC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
.++....+.|||||+++-++-+...
T Consensus 277 ~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 277 RILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCc
Confidence 5677788999999999887765543
No 245
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.27 E-value=1.8 Score=34.56 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCCCCCeEEEeC---------------CeEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 12 RVSKGHDVLFLR---------------LDYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 12 ~l~~g~rVLDIG---------------c~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+--.|.+||=|| .+|+-+|+++..+++.++.+++.|+.
T Consensus 41 gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp T-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred CcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 334688999999 29999999999999999999998876
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.44 E-value=0.79 Score=36.11 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=32.7
Q ss_pred CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 14 SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 14 ~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+.|.++.|||| .+++.|+++.-++.|.++.++.++.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~ 66 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS 66 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc
Confidence 67778999998 8999999999999999999888775
No 247
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.30 E-value=0.5 Score=40.21 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHcCCCCCCeEEEeC---C-----------eEEEEcCCHHHHHHHHHHH
Q 042963 7 LIEKARVSKGHDVLFLR---L-----------DYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIG---c-----------~VtgId~S~~~~~~A~~~~ 43 (171)
-++.|+++|+++||=|. | +|++||+++.|....+-+.
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 46789999999999998 3 9999999999999887654
No 248
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=91.13 E-value=0.18 Score=40.28 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
+.-..++|||| +++-+|.|-.|++.+++.- ..++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 34568999999 7899999999999888651 22221
Q ss_pred -----HHHHHHHhccccCcEEEEEcccCCC
Q 042963 50 -----QFFGCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 50 -----~~~~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
.-+..|+..|||+|.|+- .+...+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fia-smlggd 178 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIA-SMLGGD 178 (325)
T ss_pred hccCchHHHHHHHhcCCCccchh-HHhccc
Confidence 567899999999998854 333333
No 249
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.91 E-value=1.1 Score=41.18 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=22.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhchH
Q 042963 26 YTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 26 VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++|+|+++++++.|++++...|+.
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~ 282 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVA 282 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999988874
No 250
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=90.80 E-value=0.44 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.2
Q ss_pred CeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 17 HDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 17 ~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..|||+-| +|++||+++..++.|+.+++-.|+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~ 47 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA 47 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 36888876 8999999999999999999988876
No 251
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.49 E-value=1 Score=36.99 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHH----------hchH---------HHH
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKE----------AGLQ---------QFF 52 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~----------~gl~---------~~~ 52 (171)
+..+++++|++||=.|+ +|++++.+++-.+.|++.-.. .+++ ..+
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~ 237 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLV 237 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHH
Confidence 45678999999999884 799999999988888775211 1111 567
Q ss_pred HHHHhccccCcEEEEEcc
Q 042963 53 GCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 53 ~~~~r~LkpgG~l~i~~i 70 (171)
....+.|++||++++...
T Consensus 238 ~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 238 PPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHhhCCCcEEEEEec
Confidence 788899999999987654
No 252
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.09 E-value=0.24 Score=34.67 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=37.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHh--------------------chH---------HHHHHHHhccccCcEEEEEcccC
Q 042963 23 RLDYTGITLSEEQLKYTEMKVKEA--------------------GLQ---------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 23 Gc~VtgId~S~~~~~~A~~~~~~~--------------------gl~---------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
|++|+++|.+++-.+.+++.-... +++ ..++....+|+|+|++++.....
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 578999999998888887642110 111 78889999999999999876554
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=89.29 E-value=1.1 Score=35.14 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 15 KGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 15 ~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
..-...|||| -+.|++|-..-.++.++++...+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 4456899999 79999999999999999876554
No 254
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=88.88 E-value=1.2 Score=35.25 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHH--hch-----------------
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKE--AGL----------------- 48 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~--~gl----------------- 48 (171)
|+=+.+..+-...|.|||.||- +=+-|+.-++-.+..++..-. .++
T Consensus 89 piMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~ 168 (271)
T KOG1709|consen 89 PIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDK 168 (271)
T ss_pred HHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccccc
Confidence 3444444444478889999993 445567777777666654311 111
Q ss_pred --H---------------HHHHHHHhccccCcEEEEEc
Q 042963 49 --Q---------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 49 --~---------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+ .+++.+.++|||+|.+-...
T Consensus 169 ~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 169 HFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred CcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 0 56778899999999987644
No 255
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.57 E-value=0.51 Score=33.10 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=23.2
Q ss_pred HHHHHhchHHHHHHHHhccccCcEEEEE
Q 042963 41 MKVKEAGLQQFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 41 ~~~~~~gl~~~~~~~~r~LkpgG~l~i~ 68 (171)
-+--+.|+..+|+.+++.|+|||++++.
T Consensus 16 Ln~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 16 LNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 3444567779999999999999999985
No 256
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=87.83 E-value=1.7 Score=35.81 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH----------------hc-hH----
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE----------------AG-LQ---- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~----------------~g-l~---- 49 (171)
+.+.+..+|++||=+|| +|+++|.+++..+.|++.-.. .+ ++
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 45667778999999984 689999999999888764210 01 11
Q ss_pred -----HHHHHHHhccccCcEEEEEcc
Q 042963 50 -----QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -----~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++...+.|+|||++++...
T Consensus 242 ~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 242 VSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 457788899999999987654
No 257
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.64 E-value=2.3 Score=34.34 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH-------------------HhchH---
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK-------------------EAGLQ--- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~-------------------~~gl~--- 49 (171)
.+...++++++||..|+ +|++++.++++.+.+++.-. ..+++
T Consensus 158 ~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred HhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 34456899999999884 89999999999888754210 00111
Q ss_pred ------HHHHHHHhccccCcEEEEEcc
Q 042963 50 ------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++++.+.|+++|+++....
T Consensus 238 d~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 238 DFVGTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEECC
Confidence 467888999999999987543
No 258
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.44 E-value=2.2 Score=35.19 Aligned_cols=61 Identities=7% Similarity=-0.028 Sum_probs=45.3
Q ss_pred HcCCCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHH---------HHhchH------------H
Q 042963 10 KARVSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKV---------KEAGLQ------------Q 50 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~---------~~~gl~------------~ 50 (171)
.+.+++|++||=+|| +|+++|.+++-++.|++.- ...+++ .
T Consensus 158 ~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~ 237 (341)
T cd08237 158 QIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGRGSQS 237 (341)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCCccHH
Confidence 356789999999995 6999999999888876511 011222 3
Q ss_pred HHHHHHhccccCcEEEEEcc
Q 042963 51 FFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 51 ~~~~~~r~LkpgG~l~i~~i 70 (171)
.++...+.|+|||++++..+
T Consensus 238 ~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 238 AINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHhCcCCcEEEEEee
Confidence 57888899999999987654
No 259
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=87.40 E-value=1.5 Score=34.35 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=29.6
Q ss_pred CCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 16 GHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 16 g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
+.+++|||. +||=||....-+.+-+....+.|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC
Confidence 689999994 8999999999998888888877765
No 260
>PHA01634 hypothetical protein
Probab=87.37 E-value=1.4 Score=32.10 Aligned_cols=31 Identities=10% Similarity=-0.151 Sum_probs=27.1
Q ss_pred CCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 15 KGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 15 ~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
.+.+|+|||+ .|++++.++...+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 4779999994 999999999999999887753
No 261
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.28 E-value=1.8 Score=35.75 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=46.3
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH--------------------hchH
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE--------------------AGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~--------------------~gl~ 49 (171)
+.+..++++|++||=.|| +|+++|.+++..+.+++.-.. .+++
T Consensus 168 ~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 168 AVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 345568899999999984 599999999888877643110 0111
Q ss_pred ---------HHHHHHHhccccCcEEEEEcc
Q 042963 50 ---------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ---------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++...+.|++||++++...
T Consensus 248 ~vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 248 VVIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 467778889999999987654
No 262
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.88 E-value=2 Score=35.82 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=46.4
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH-------------------hchH-
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE-------------------AGLQ- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~-------------------~gl~- 49 (171)
+.+.+++++|++||=+|+ +|+++|.+++..+.+++.-.. .+++
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 346678999999999994 699999999988887653110 0111
Q ss_pred --------HHHHHHHhccccCcEEEEEcc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++...+.|++||++++...
T Consensus 263 vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 263 AFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 456777888999999886543
No 263
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.75 E-value=2.7 Score=35.08 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH-H------h--------------chH-
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK-E------A--------------GLQ- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~-~------~--------------gl~- 49 (171)
.....+++.+|+=+|| +|+.+|.+++-++.|++... . . |++
T Consensus 162 ~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 162 ERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence 3445566669999996 99999999999999988321 0 0 111
Q ss_pred --------HHHHHHHhccccCcEEEEEcccCCC
Q 042963 50 --------QFFGCCESLLAEHGLLLLQFSSVPD 74 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~i~~~~ 74 (171)
..++.+.+.++|||++++-.+....
T Consensus 242 vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 242 VIEAVGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6678899999999999987766544
No 264
>PRK10742 putative methyltransferase; Provisional
Probab=86.55 E-value=2.2 Score=34.30 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=36.8
Q ss_pred HHHHHHcCCCCCC--eEEEeC--------------CeEEEEcCCHHHHHHHHHHHHHh
Q 042963 5 SFLIEKARVSKGH--DVLFLR--------------LDYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 5 ~~ll~~l~l~~g~--rVLDIG--------------c~VtgId~S~~~~~~A~~~~~~~ 46 (171)
+.+++.+++++|. +|||.= |+||+||-++......++..+..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence 6788999999999 999963 79999999999999988887653
No 265
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.36 E-value=0.4 Score=37.71 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=39.7
Q ss_pred CCeEEEeCC--------------eEEEEcCCHHHHHHHHHHH-H--------HhchH-----------------HHHHHH
Q 042963 16 GHDVLFLRL--------------DYTGITLSEEQLKYTEMKV-K--------EAGLQ-----------------QFFGCC 55 (171)
Q Consensus 16 g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~-~--------~~gl~-----------------~~~~~~ 55 (171)
..++||+|+ +|.+-++|..|....+++- . +.++. ..++.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di 192 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI 192 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence 469999996 7888899999988776541 0 00111 778899
Q ss_pred Hhcccc-CcEEEEE
Q 042963 56 ESLLAE-HGLLLLQ 68 (171)
Q Consensus 56 ~r~Lkp-gG~l~i~ 68 (171)
+.+|+| .|+.++.
T Consensus 193 ~~vl~psngrviva 206 (288)
T KOG3987|consen 193 HLVLAPSNGRVIVA 206 (288)
T ss_pred HHHhccCCCcEEEE
Confidence 999999 8998774
No 266
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.99 E-value=1.2 Score=39.00 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCCC-eEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH----------------------------
Q 042963 14 SKGH-DVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---------------------------- 49 (171)
Q Consensus 14 ~~g~-rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---------------------------- 49 (171)
++-. ++|-+|| .||.+|+|+.-++....+-......
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 4555 9999999 8999999999998887664322111
Q ss_pred ----------------HHHHHHHhccccCcEEEEEcc
Q 042963 50 ----------------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ----------------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..+.+++|+|+|||+....+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 457899999999999876555
No 267
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.59 E-value=1.2 Score=35.95 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=26.2
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCH----HHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSE----EQLKYTEMK 42 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~----~~~~~A~~~ 42 (171)
+.+-++||.+||-+|+ -|++|+.|+ +.+..|+++
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 5678999999999995 688888885 455555554
No 268
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.03 E-value=2.7 Score=35.71 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=40.9
Q ss_pred CCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------------------
Q 042963 16 GHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------- 49 (171)
Q Consensus 16 g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------------------- 49 (171)
-.++||+|. +++-++.|+..-+.....+.....+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 356999994 6777788887777666655433221
Q ss_pred ------------HHHHHHHhccccCcEEEEEccc
Q 042963 50 ------------QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ------------~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.+++.++..+.|||.++|..-+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 4788899999999999986533
No 269
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.85 E-value=14 Score=30.78 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=38.0
Q ss_pred hchHHHHHHHHhccccCcEEEEEcccCCCcccccc--cC------------------ccchhhhcccCCCcCCCHHHHHH
Q 042963 46 AGLQQFFGCCESLLAEHGLLLLQFSSVPDQCYDEH--RL------------------SPGFMKEYVFPGGCLPSLNRITS 105 (171)
Q Consensus 46 ~gl~~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~--~~------------------~~~~~~~~ifp~~~lp~~~~l~~ 105 (171)
..+..+++.=++-|+|||++++...+.+....... .. ..+-+..+-+| -+.|+.+|+..
T Consensus 160 ~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP-~Y~ps~eEv~~ 238 (334)
T PF03492_consen 160 KDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIP-IYFPSPEEVRA 238 (334)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--S-BB---HHHHHH
T ss_pred HHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCC-ccCCCHHHHHH
Confidence 34557777767889999999998777665211000 00 00111222344 36799999999
Q ss_pred HHHhcCCcc
Q 042963 106 TMTSSSRLC 114 (171)
Q Consensus 106 ~~~~~g~~~ 114 (171)
.+++.|.+.
T Consensus 239 ~I~~~gsF~ 247 (334)
T PF03492_consen 239 IIEEEGSFE 247 (334)
T ss_dssp HHHHHTSEE
T ss_pred HHhcCCCEE
Confidence 999988654
No 270
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.53 E-value=3.7 Score=32.74 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHH--------------HH----hchH--
Q 042963 7 LIEKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKV--------------KE----AGLQ-- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~--------------~~----~gl~-- 49 (171)
.+++++..+|++||=+|+ + |+.+|.+++-.+.|++.- .+ .+++
T Consensus 112 al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred HHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEE
Confidence 456677789999999994 4 899999988777765421 00 1122
Q ss_pred -------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++...+.|+|+|++++...
T Consensus 192 id~~G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 192 LEFSGATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EECCCChHHHHHHHHHhcCCCEEEEecc
Confidence 457788899999999987654
No 271
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=83.00 E-value=4.4 Score=33.56 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh--------------------ch
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA--------------------GL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~--------------------gl 48 (171)
.+.+..++++|++||=.|+ .++++.-|++-.+.+++.-+.. ++
T Consensus 133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 3445678999999999993 6777777777776666543211 11
Q ss_pred H--------HHHHHHHhccccCcEEEEEcc
Q 042963 49 Q--------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 49 ~--------~~~~~~~r~LkpgG~l~i~~i 70 (171)
+ ..+.+..+.|+++|+++....
T Consensus 213 Dvv~D~vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTVGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECCCHHHHHHHHHHhccCCEEEEEec
Confidence 1 778888899999999987544
No 272
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.00 E-value=4.5 Score=34.10 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH-------h-chH-----------
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE-------A-GLQ----------- 49 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~-------~-gl~----------- 49 (171)
.++..+++++|++|-=+|| ++++||+.++-.++|++.-+. . ++-
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCC
Confidence 4567789999999999997 999999999999999975211 1 111
Q ss_pred ----------HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 ----------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ----------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
..++.....+.++|..++..+...
T Consensus 256 d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 256 DYAFECVGNVEVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred CEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 677888888888999988665443
No 273
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.52 E-value=5.3 Score=32.34 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH-----------------H---hchH
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK-----------------E---AGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~-----------------~---~gl~ 49 (171)
+.+..++++|++||=.|. +|++++.|++..+.+++.-. . .+++
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeE
Confidence 346678999999999882 89999999888777654210 0 0111
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+....+.|+|||+++...
T Consensus 210 vv~d~~G~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 210 CYFDNVGGEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEECCCHHHHHHHHHHhCcCcEEEEec
Confidence 45677889999999998643
No 274
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=81.47 E-value=15 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHcCC--CCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 8 IEKARV--SKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 8 l~~l~l--~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..-+.. -.|.++||+=+ +||.||.+...+...+++++..++.
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~ 92 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE 92 (187)
T ss_pred HHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc
Confidence 344444 57899999842 9999999999999999998887744
No 275
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.15 E-value=5.2 Score=32.55 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHHH---------------H----hchH-
Q 042963 7 LIEKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKVK---------------E----AGLQ- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~~---------------~----~gl~- 49 (171)
.++.+++++|++||=+|+ + |+++|.+++..+.+++.-. + .+++
T Consensus 155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 346788999999999994 5 9999999988887754310 0 0222
Q ss_pred --------HHHHHHHhccccCcEEEEEcc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..+....+.|+++|++++...
T Consensus 235 vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 235 AIECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 345677889999999986543
No 276
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=80.86 E-value=5 Score=32.63 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCC-CcCCCHHHHHHHHHhcCCcc---hh-hhcCCCHH
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPG-GCLPSLNRITSTMTSSSRLC---EI-LDLGFSEK 124 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~-~~lp~~~~l~~~~~~~g~~~---~i-~~~~~~~~ 124 (171)
.|++.+.++|||||.- | +..+-.|+.. +. .+... +.=.+.+|+...++..||.. +. ...+|...
T Consensus 183 ~Yi~tI~~lLkpgG~W-I---N~GPLlyh~~----~~---~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~~Y~~d 251 (270)
T PF07942_consen 183 EYIETIEHLLKPGGYW-I---NFGPLLYHFE----PM---SIPNEMSVELSLEEIKELIEKLGFEIEKEESSILSGYTTD 251 (270)
T ss_pred HHHHHHHHHhccCCEE-E---ecCCccccCC----CC---CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeecCCCCC
Confidence 8999999999999943 2 2221122211 00 00001 12257899999999988532 11 23457777
Q ss_pred HHHHHHHHH
Q 042963 125 FLRTWEYYF 133 (171)
Q Consensus 125 ~~r~w~~yl 133 (171)
..-||+.++
T Consensus 252 ~~Sm~q~~Y 260 (270)
T PF07942_consen 252 PESMMQTYY 260 (270)
T ss_pred HHHHhhCcc
Confidence 777777654
No 277
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=80.44 E-value=9.1 Score=28.94 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.6
Q ss_pred HHHHHHHhccccCcEEEEEc
Q 042963 50 QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+.++.++|||||.+++..
T Consensus 92 ~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 92 RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HHHHHHHHhhccCCeEEEEe
Confidence 67889999999999999864
No 278
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=79.96 E-value=8.2 Score=32.93 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=31.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhchH-------HHHHHHHhccccCcEEEE
Q 042963 26 YTGITLSEEQLKYTEMKVKEAGLQ-------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 26 VtgId~S~~~~~~A~~~~~~~gl~-------~~~~~~~r~LkpgG~l~i 67 (171)
++|.|+++.+++.|+.++..+|+. .-.+.+..-+.+.|.++.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 679999999999999999999987 223334444455677644
No 279
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.92 E-value=9.9 Score=31.90 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhch----------H------------
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVKEAGL----------Q------------ 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~~~gl----------~------------ 49 (171)
+.+.++.||++|-=+|. +||+||-|..-.+.|-++.-...+ +
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee
Confidence 56778899999988883 999999997655555443211000 0
Q ss_pred ------HHHHHHHhccccCcEEEEEcccC
Q 042963 50 ------QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.-+..+.+.||++|++++-.+..
T Consensus 254 v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 254 VSNLAEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeccccchHHHHHHhhcCCEEEEEeCcC
Confidence 34677889999999999765433
No 280
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.86 E-value=7.8 Score=31.14 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHHH----------------H---hchH--
Q 042963 8 IEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKVK----------------E---AGLQ-- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~~----------------~---~gl~-- 49 (171)
.+..++++|++||=.| ++|++++.|++..+.+++.-. + .+++
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 4567899999999888 389999988887777654210 0 1111
Q ss_pred ------HHHHHHHhccccCcEEEEE
Q 042963 50 ------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~ 68 (171)
..++...+.|+++|+++..
T Consensus 216 ld~~g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 FDNVGGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EECCCHHHHHHHHHhhccCCEEEEE
Confidence 5567788889999998754
No 281
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=77.50 E-value=10 Score=29.64 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHH--H-----------HhchH--------
Q 042963 8 IEKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKV--K-----------EAGLQ-------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~--~-----------~~gl~-------- 49 (171)
+...++++|++||=.|| + |++++.+++..+.+++.- . ..+++
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~ 169 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGS 169 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCC
Confidence 34678999999999984 6 999999999988776542 0 01121
Q ss_pred -HHHHHHHhccccCcEEEEEc
Q 042963 50 -QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+....+.|+++|+++...
T Consensus 170 ~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred hHHHHHHHHHhcCCcEEEEEe
Confidence 45677889999999998643
No 282
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=76.28 E-value=4.6 Score=32.13 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHHcCCCCCC--eEEEe--------------CCeEEEEcCCHHHHHHHHHHH
Q 042963 5 SFLIEKARVSKGH--DVLFL--------------RLDYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 5 ~~ll~~l~l~~g~--rVLDI--------------Gc~VtgId~S~~~~~~A~~~~ 43 (171)
+.+++.+++++|+ +|||. ||+||+++-|+-+....++-.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL 117 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGL 117 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHH
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHH
Confidence 5688899999996 99995 379999999999887766543
No 283
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.89 E-value=9.2 Score=31.64 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH------------------HH---hchH
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV------------------KE---AGLQ 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~------------------~~---~gl~ 49 (171)
.+..++++|++||=.|+ +|++++.|++..+.+++.. .+ .|++
T Consensus 151 ~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 151 YEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcE
Confidence 35578999999999984 8999999988887765210 00 0122
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|++||++++..
T Consensus 231 ~v~d~vG~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 231 IYFDNVGGDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEECCCHHHHHHHHHHhccCCEEEEEC
Confidence 56778889999999998654
No 284
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.38 E-value=27 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=25.0
Q ss_pred CCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHH
Q 042963 12 RVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 12 ~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~ 42 (171)
.+++|++||-.|+ +|++++.+++..+.+++.
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 3489999999884 899999998887776543
No 285
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.15 E-value=2.9 Score=31.47 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
.+.++|+|.|||||.+-+.
T Consensus 67 ~alkechr~Lrp~G~LriA 85 (185)
T COG4627 67 SALKECHRFLRPGGKLRIA 85 (185)
T ss_pred HHHHHHHHHhCcCcEEEEE
Confidence 7789999999999999764
No 286
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.57 E-value=13 Score=30.14 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH--------------------HhchH---
Q 042963 9 EKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK--------------------EAGLQ--- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~--------------------~~gl~--- 49 (171)
+...+++|++||-.|+ +|++++.|+++.+.+++... ..+++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 5678899999999873 89999888888877653310 01111
Q ss_pred ------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|+++|+++...
T Consensus 233 d~~g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 233 DATGNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 45677788899999987543
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=74.16 E-value=10 Score=30.63 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCCCeEEEe--C------------CeEEEEcCCHHHHHHHHHHHH
Q 042963 13 VSKGHDVLFL--R------------LDYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 13 l~~g~rVLDI--G------------c~VtgId~S~~~~~~A~~~~~ 44 (171)
-.+|+.|||- | .+.+|+|++++.++.|++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 3799999995 3 299999999999999999974
No 288
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=73.63 E-value=2.7 Score=32.74 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=12.9
Q ss_pred CeEEEeC--------------------CeEEEEcCCHH
Q 042963 17 HDVLFLR--------------------LDYTGITLSEE 34 (171)
Q Consensus 17 ~rVLDIG--------------------c~VtgId~S~~ 34 (171)
+.|+|+| |+|+|||+.-.
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir 71 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR 71 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc
Confidence 4899999 49999999543
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=73.21 E-value=23 Score=29.14 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=43.2
Q ss_pred HcCCCCCCeEEEeCC----------------eEEEEcC---CHHHHHHHHHHHH---------------HhchH------
Q 042963 10 KARVSKGHDVLFLRL----------------DYTGITL---SEEQLKYTEMKVK---------------EAGLQ------ 49 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc----------------~VtgId~---S~~~~~~A~~~~~---------------~~gl~------ 49 (171)
.+++++|++||=+|+ +|++++. +++-.+.+++.-. ..+++
T Consensus 167 ~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 167 RLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred hcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence 345789999999994 8999886 6666666654310 01122
Q ss_pred ---HHHHHHHhccccCcEEEEEccc
Q 042963 50 ---QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ---~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
..+.+..+.|++||++++....
T Consensus 247 g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 247 GVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCHHHHHHHHHHccCCcEEEEEecC
Confidence 5678889999999999875543
No 290
>PLN02827 Alcohol dehydrogenase-like
Probab=72.61 E-value=13 Score=31.07 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH------------------HH---hchH-
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV------------------KE---AGLQ- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~------------------~~---~gl~- 49 (171)
+..++++|++||=+|+ .|+++|.+++..+.|++.- .+ .+++
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCE
Confidence 4567899999999984 5889998888877765321 00 0222
Q ss_pred --------HHHHHHHhccccC-cEEEEEcc
Q 042963 50 --------QFFGCCESLLAEH-GLLLLQFS 70 (171)
Q Consensus 50 --------~~~~~~~r~Lkpg-G~l~i~~i 70 (171)
..+....+.|++| |++++...
T Consensus 267 vid~~G~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 267 SFECVGDTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred EEECCCChHHHHHHHHhhccCCCEEEEECC
Confidence 4677888999998 99987543
No 291
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=72.58 E-value=61 Score=27.78 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=42.4
Q ss_pred hchHHHHHHHHhccccCcEEEEEcccCCCccccccc-Cccch---------------------hhhcccCCCcCCCHHHH
Q 042963 46 AGLQQFFGCCESLLAEHGLLLLQFSSVPDQCYDEHR-LSPGF---------------------MKEYVFPGGCLPSLNRI 103 (171)
Q Consensus 46 ~gl~~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~-~~~~~---------------------~~~~ifp~~~lp~~~~l 103 (171)
..+..|++.=++-|.|||++++...+++........ ....| +..+-+| -+.|+++|+
T Consensus 214 ~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP-~Y~ps~eEv 292 (386)
T PLN02668 214 ADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIP-VYAPSLQDF 292 (386)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCc-ccCCCHHHH
Confidence 344477777778899999999988777532110000 00011 1122344 367999999
Q ss_pred HHHHHhcCCcc
Q 042963 104 TSTMTSSSRLC 114 (171)
Q Consensus 104 ~~~~~~~g~~~ 114 (171)
.+.+++.|.+.
T Consensus 293 ~~~Ie~~gsF~ 303 (386)
T PLN02668 293 KEVVEANGSFA 303 (386)
T ss_pred HHHHhhcCCEE
Confidence 99999998654
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.47 E-value=10 Score=28.36 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH---HHHH-HHHhc-cccC
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ---QFFG-CCESL-LAEH 62 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~---~~~~-~~~r~-Lkpg 62 (171)
.++.++..+.-.+..+.+|+|. .-+|+++.+=.+.+++-++-+.|+. .|++ .+++. |+|=
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 4677888887788779999992 7899999999999999998888876 4443 34444 5664
Q ss_pred cEEEE
Q 042963 63 GLLLL 67 (171)
Q Consensus 63 G~l~i 67 (171)
-..+|
T Consensus 140 ~~vvi 144 (199)
T KOG4058|consen 140 RNVVI 144 (199)
T ss_pred ceEEE
Confidence 44443
No 293
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=72.37 E-value=19 Score=29.98 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHHHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHH--------HHh------------ch
Q 042963 6 FLIEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKV--------KEA------------GL 48 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~--------~~~------------gl 48 (171)
-+++--.+++|++|+==| |+|+||-=|++-++++.+.. +.. |+
T Consensus 141 gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GI 220 (340)
T COG2130 141 GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGI 220 (340)
T ss_pred HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCe
Confidence 356667789999998765 79999999999999888621 111 11
Q ss_pred H--------HHHHHHHhccccCcEEEEEc
Q 042963 49 Q--------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 49 ~--------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+ ..++.+...|++.+|+.+..
T Consensus 221 DvyfeNVGg~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 221 DVYFENVGGEVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred EEEEEcCCchHHHHHHHhhccccceeeee
Confidence 1 78888999999999987643
No 294
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.33 E-value=8.8 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCCCeEEEeC----C------------eEEEEcCCHHHHHHHHHHHHHh-chH
Q 042963 14 SKGHDVLFLR----L------------DYTGITLSEEQLKYTEMKVKEA-GLQ 49 (171)
Q Consensus 14 ~~g~rVLDIG----c------------~VtgId~S~~~~~~A~~~~~~~-gl~ 49 (171)
.++-++|||| | +.||-|+++..++.|+..+... +++
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence 4678899999 4 8999999999999999887654 443
No 295
>PLN02740 Alcohol dehydrogenase-like
Probab=72.12 E-value=12 Score=31.30 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=45.5
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH------------------H---hch
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK------------------E---AGL 48 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~------------------~---~gl 48 (171)
+.+..++++|++||=+|+ +|+++|.+++..+.|++.-. + .++
T Consensus 190 ~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 190 AWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 345678999999999884 59999999888887754210 0 012
Q ss_pred H---------HHHHHHHhccccC-cEEEEEcc
Q 042963 49 Q---------QFFGCCESLLAEH-GLLLLQFS 70 (171)
Q Consensus 49 ~---------~~~~~~~r~Lkpg-G~l~i~~i 70 (171)
+ ..++...+.+++| |++++...
T Consensus 270 dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 270 DYSFECAGNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CEEEECCCChHHHHHHHHhhhcCCCEEEEEcc
Confidence 2 5677777888887 99877554
No 296
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=71.41 E-value=2.6 Score=31.95 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHHHHHHhccccCcEEEEEc
Q 042963 50 QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+.+++|+|||||.+++..
T Consensus 37 ~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 37 EWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEEe
Confidence 67899999999999998853
No 297
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=70.45 E-value=8.4 Score=32.78 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchH----------------------------------HHHHHHHhccccCcEEEEEc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQ----------------------------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~----------------------------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+|+.-|+|++.++.++++++..+++ .|++.+.+.++.||.+.++.
T Consensus 76 ~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 76 KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 8999999999999999998766543 78899999999999998864
No 298
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.37 E-value=19 Score=29.87 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH------------------H---hchH
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK------------------E---AGLQ 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~------------------~---~gl~ 49 (171)
.+..++++|++||=+|+ +|+++|.+++..+.|++.-. + .+++
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 45678999999999984 69999999988887754210 0 0121
Q ss_pred ---------HHHHHHHhccccC-cEEEEEcc
Q 042963 50 ---------QFFGCCESLLAEH-GLLLLQFS 70 (171)
Q Consensus 50 ---------~~~~~~~r~Lkpg-G~l~i~~i 70 (171)
..+....+.+++| |++++...
T Consensus 258 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECIGNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCCeEEEEec
Confidence 4567777888886 99886554
No 299
>PRK13699 putative methylase; Provisional
Probab=69.33 E-value=17 Score=28.52 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 5 SFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
+++++. --.+|+.|||-=| +..|+|++++.++.|.+++++
T Consensus 154 ~~~i~~-~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIES-FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHH-hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 344433 3468999999642 899999999999999988754
No 300
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=68.53 E-value=19 Score=29.27 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=43.6
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH--------HH-------------hchH-
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV--------KE-------------AGLQ- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~--------~~-------------~gl~- 49 (171)
+..++++|++||=.|+ +|++++.+++..+.+++.. .. .|++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 4578999999999883 8888888888877776510 00 0111
Q ss_pred -------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+....+.|+++|+++...
T Consensus 225 v~d~~g~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNVGGKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECCCHHHHHHHHHHhccCcEEEEec
Confidence 45677888999999988643
No 301
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=68.20 E-value=38 Score=26.93 Aligned_cols=37 Identities=5% Similarity=-0.035 Sum_probs=25.1
Q ss_pred HHHcCCCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHHH
Q 042963 8 IEKARVSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~~ 44 (171)
+..+.=+..-++=|--| .|.|-|+++++++.|+++..
T Consensus 44 l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 44 LHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 33333345556777666 89999999999999999864
No 302
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=67.68 E-value=17 Score=29.76 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHHHHhchH--------------------
Q 042963 7 LIEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKVKEAGLQ-------------------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~~~~gl~-------------------- 49 (171)
+.+.-.++||++||=-- .++++..-+.+-.+.|+++-.+..+.
T Consensus 138 l~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd 217 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVD 217 (336)
T ss_pred HHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCce
Confidence 44556899999999654 28888888888888887764332221
Q ss_pred --------HHHHHHHhccccCcEEEEE
Q 042963 50 --------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~ 68 (171)
.-|+.-...|||+|.++-.
T Consensus 218 ~vyDsvG~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 218 AVYDSVGKDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred eeeccccchhhHHHHHHhccCceEEEe
Confidence 4566777888888888743
No 303
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=67.35 E-value=11 Score=33.26 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=28.1
Q ss_pred CCCeEEEeCC------------------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 15 KGHDVLFLRL------------------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 15 ~g~rVLDIGc------------------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
.+.+|||.+| +++|+|+++..+..|+.++...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 4569999998 68999999999999998876554
No 304
>PRK11524 putative methyltransferase; Provisional
Probab=67.31 E-value=4.9 Score=32.52 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=17.5
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
..+.++.++|||||.+++.
T Consensus 61 ~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 61 EWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHhCCCcEEEEE
Confidence 7889999999999999985
No 305
>PRK13699 putative methylase; Provisional
Probab=66.82 E-value=4.9 Score=31.61 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=16.3
Q ss_pred HHHHHHHhccccCcEEEE
Q 042963 50 QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i 67 (171)
..+++++|+|||||.+++
T Consensus 53 ~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 53 PACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 778999999999999876
No 306
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.20 E-value=23 Score=28.86 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHHH-------------------HhchH---
Q 042963 9 EKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKVK-------------------EAGLQ--- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~~-------------------~~gl~--- 49 (171)
+...+++|++||=.|+ + |+++|.+++-.+.+++.-. ..+++
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 4567889999999985 4 7889988887776653210 01111
Q ss_pred -------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..+....+.|+|||++++...
T Consensus 234 ~d~~G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 234 LETAGVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 467778899999999887543
No 307
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=65.61 E-value=39 Score=27.00 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH-----------HhchH---------H
Q 042963 7 LIEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK-----------EAGLQ---------Q 50 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~-----------~~gl~---------~ 50 (171)
+++..++++|.+||=.|+ +|+.++.+++..+.+++.-. ..+++ .
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~ 226 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS 226 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH
Confidence 345678899999999884 89999999999988876311 01111 4
Q ss_pred HHHHHHhccccCcEEEEE
Q 042963 51 FFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 51 ~~~~~~r~LkpgG~l~i~ 68 (171)
.++...+.|+++|++++.
T Consensus 227 ~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 227 GLELALRLVRPRGTVVLK 244 (319)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 567778899999999863
No 308
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=65.11 E-value=37 Score=29.32 Aligned_cols=66 Identities=6% Similarity=-0.096 Sum_probs=45.0
Q ss_pred HHHHHHHcCC-CCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH------H--hchH---------
Q 042963 4 VSFLIEKARV-SKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK------E--AGLQ--------- 49 (171)
Q Consensus 4 ~~~ll~~l~l-~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~------~--~gl~--------- 49 (171)
++-+++..++ -+|++|+=+|| +|+.+|.++.-.+.|++.-. + .+.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG~~ 268 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTGNK 268 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCCCH
Confidence 3455566565 68999999994 89999999887776654310 0 0111
Q ss_pred HHHHH-HHhccccCcEEEEEc
Q 042963 50 QFFGC-CESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~-~~r~LkpgG~l~i~~ 69 (171)
..+.. ..+.+||||+++...
T Consensus 269 ~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 269 DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHHHhcCCCCcEEEEeC
Confidence 44554 488999999998654
No 309
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.40 E-value=26 Score=28.58 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=44.7
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH--------------------HhchH-
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK--------------------EAGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~--------------------~~gl~- 49 (171)
++...+++|++||=.|+ .|+++|.+++..+.+++.-. ..+++
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 45678999999999884 58889888877766554210 01121
Q ss_pred --------HHHHHHHhccccCcEEEEEcc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..+..+.+.|+++|+++....
T Consensus 239 vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 239 VIIAGGGQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEecc
Confidence 467888999999999986543
No 310
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=62.15 E-value=32 Score=27.60 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH---------------HhchH-------
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK---------------EAGLQ------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~---------------~~gl~------- 49 (171)
++.+.+++|++||-+|+ +|++++.+++..+.+++.-. ..+++
T Consensus 155 l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 155 LRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred HHhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC
Confidence 34578899999999985 89999999988877643210 00111
Q ss_pred --HHHHHHHhccccCcEEEEEc
Q 042963 50 --QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --~~~~~~~r~LkpgG~l~i~~ 69 (171)
...+.+.+.|+++|+++...
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEEC
Confidence 45667788899999887653
No 311
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=61.51 E-value=40 Score=27.27 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=41.6
Q ss_pred HHcCCCCC--CeEEEeC-----------------C-eEEEEcCCHHHHHHHHHHH-----------------HH---hch
Q 042963 9 EKARVSKG--HDVLFLR-----------------L-DYTGITLSEEQLKYTEMKV-----------------KE---AGL 48 (171)
Q Consensus 9 ~~l~l~~g--~rVLDIG-----------------c-~VtgId~S~~~~~~A~~~~-----------------~~---~gl 48 (171)
+..++++| ++||=.| | +|++++.|++..+.+++.. .+ .|+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 45567776 9999988 3 6999999988877765411 00 122
Q ss_pred H--------HHHHHHHhccccCcEEEEE
Q 042963 49 Q--------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 49 ~--------~~~~~~~r~LkpgG~l~i~ 68 (171)
+ ..+....+.|+++|+++..
T Consensus 226 d~vid~~g~~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 226 DVYFDNVGGEISDTVISQMNENSHIILC 253 (345)
T ss_pred eEEEECCCcHHHHHHHHHhccCCEEEEE
Confidence 2 3457778889999998854
No 312
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=60.95 E-value=15 Score=28.70 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHcCCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 7 LIEKARVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
++++=..-.|.||||.|. .|+..|+.+...+.++-+++..|++
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence 334445567999999994 8999999998888888888877765
No 313
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.79 E-value=21 Score=30.37 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=39.1
Q ss_pred eCC-eEEEEcCCHHHHHHHHHHHHHh-chH-------------------------------HHHHHHHhccccCcEEEEE
Q 042963 22 LRL-DYTGITLSEEQLKYTEMKVKEA-GLQ-------------------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 22 IGc-~VtgId~S~~~~~~A~~~~~~~-gl~-------------------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
+|+ +|+.=|+|++.++.++++++.. +.+ .|++...+.++.||.+.++
T Consensus 74 ~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 74 TGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred cCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 344 8999999999999999998766 211 7888888999999999775
Q ss_pred c
Q 042963 69 F 69 (171)
Q Consensus 69 ~ 69 (171)
.
T Consensus 154 A 154 (380)
T COG1867 154 A 154 (380)
T ss_pred e
Confidence 3
No 314
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.73 E-value=59 Score=28.24 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=38.3
Q ss_pred CCC-CCCeEEEeCC----------------eEEEEcCCHHHHHHHHHH------HHH--hchH---------HHHH-HHH
Q 042963 12 RVS-KGHDVLFLRL----------------DYTGITLSEEQLKYTEMK------VKE--AGLQ---------QFFG-CCE 56 (171)
Q Consensus 12 ~l~-~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~------~~~--~gl~---------~~~~-~~~ 56 (171)
++. +|.+|+=+|+ +|+.+|.++.....|... ..+ .+.+ ..+. +..
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 554 8999999994 899999998765443221 000 0111 4554 678
Q ss_pred hccccCcEEEEEc
Q 042963 57 SLLAEHGLLLLQF 69 (171)
Q Consensus 57 r~LkpgG~l~i~~ 69 (171)
..+|+|+.++...
T Consensus 287 ~~mK~GailiNvG 299 (425)
T PRK05476 287 EAMKDGAILANIG 299 (425)
T ss_pred hcCCCCCEEEEcC
Confidence 8999999887644
No 315
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=60.54 E-value=35 Score=27.84 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHcCCCCCCeEEEeC----------------C-eEEEEcCCHHHHHHHHHHH----------------HH----hchH-
Q 042963 8 IEKARVSKGHDVLFLR----------------L-DYTGITLSEEQLKYTEMKV----------------KE----AGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIG----------------c-~VtgId~S~~~~~~A~~~~----------------~~----~gl~- 49 (171)
++.+++++|++||=.| + +|++++.+++..+.+++.- .+ .+++
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 3667889999999988 3 7889998888877764321 00 1122
Q ss_pred --------HHHHHHHhccccCcEEEEEcc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++.+.+.|+++|+++....
T Consensus 245 vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 245 SFDCAGVQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred EEECCCCHHHHHHHHHhccCCCEEEEEcc
Confidence 467788899999999886543
No 316
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=59.52 E-value=22 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHcCCCCCCeEEEeC---C-----------eEEEEcCCHHHHHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLR---L-----------DYTGITLSEEQLKYTEMKVK 44 (171)
Q Consensus 9 ~~l~l~~g~rVLDIG---c-----------~VtgId~S~~~~~~A~~~~~ 44 (171)
+.+.+.+|.+|.-|| | +|..||+.+.+++..+-+.+
T Consensus 57 eam~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 57 EAMQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HHHhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 456788999999999 4 89999999999988776643
No 317
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=59.20 E-value=22 Score=29.69 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~ 42 (171)
+.+.+++|++||.+|| +|+++|.++++.+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 5677899999999995 599999999998887765
No 318
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.87 E-value=35 Score=27.39 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHHH------------------HhchH----
Q 042963 9 EKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKVK------------------EAGLQ---- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~~------------------~~gl~---- 49 (171)
+.+.+++|++||-+|+ + |+.++.+++..+.+++... ..+++
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 6778999999999983 5 8889999888877643210 01111
Q ss_pred -----HHHHHHHhccccCcEEEEEc
Q 042963 50 -----QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----~~~~~~~r~LkpgG~l~i~~ 69 (171)
....+..+.|+++|+++...
T Consensus 233 ~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 233 ATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCChHHHHHHHHHHhcCCEEEEEe
Confidence 45677889999999987543
No 319
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.73 E-value=20 Score=30.08 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh---------chH-----------
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA---------GLQ----------- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~---------gl~----------- 49 (171)
....++++||++|-=+|+ +++|||+.++-.+.|++.-... .+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGV 263 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCc
Confidence 456678999999998883 9999999999999988652110 111
Q ss_pred ----------HHHHHHHhccccC-cEEEEEcccC
Q 042963 50 ----------QFFGCCESLLAEH-GLLLLQFSSV 72 (171)
Q Consensus 50 ----------~~~~~~~r~Lkpg-G~l~i~~i~~ 72 (171)
..+++....-+.| |.-++..+..
T Consensus 264 DysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 264 DYSFECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred eEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 6677777777788 8777655444
No 320
>KOG2730 consensus Methylase [General function prediction only]
Probab=56.98 E-value=5.9 Score=31.55 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=24.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 24 LDYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
|.|.+||+++.-+.-|+.+++-.|++
T Consensus 117 ~~VisIdiDPikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 117 PYVIAIDIDPVKIACARHNAEVYGVP 142 (263)
T ss_pred CeEEEEeccHHHHHHHhccceeecCC
Confidence 49999999999999999999888876
No 321
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=55.63 E-value=22 Score=31.29 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=28.8
Q ss_pred CeEEEeCC---------------eEEEEcCCHHHHHHHHHHHHHhchH
Q 042963 17 HDVLFLRL---------------DYTGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 17 ~rVLDIGc---------------~VtgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..|||||. .||+++.-..|.+.|++...+.|.+
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 35899994 8999999999999999998888765
No 322
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=54.85 E-value=33 Score=22.47 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=32.5
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhc
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAG 47 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~g 47 (171)
+.+.+.|.=.|+-.|++.|| +++.-+-.++.++...+++++..
T Consensus 17 ~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 17 DQVYEKLEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKIEENP 76 (78)
T ss_pred HHHHHHHhcCCCccEEEcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHHhccc
Confidence 44666676679999999997 56666777888888888876543
No 323
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=53.54 E-value=67 Score=25.92 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHH-------------------HHhchH---
Q 042963 9 EKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKV-------------------KEAGLQ--- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~-------------------~~~gl~--- 49 (171)
..+.+++|++||-.|+ + |++++.+++..+.+++.- ...+++
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEE
Confidence 4677899999999984 5 999998888777654220 001121
Q ss_pred ------HHHHHHHhccccCcEEEEEc
Q 042963 50 ------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|+++|+++...
T Consensus 233 d~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 233 EAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 35677889999999987543
No 324
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=52.44 E-value=58 Score=25.48 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=26.2
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
+...+++|++||-.|| +|+.++.+++..+.++
T Consensus 133 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 3567889999999985 8899999888777664
No 325
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.46 E-value=56 Score=26.34 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC-eEEEEcCCHHHHHHHHHHHHHhchHHHHHHHHhccccCcEEEEE
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL-DYTGITLSEEQLKYTEMKVKEAGLQQFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc-~VtgId~S~~~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l~i~ 68 (171)
-++.+++..+=.+.+-|+-=|+ .|||+--=.+ +.+...-. ..+.-...+|||||.|+--
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DE---y~Q~qLll----aAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDE---YVQAQLLL----AALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHH---HHHHHHHH----HHHHHHhheecCCCeeehh
Confidence 3567777777766666666665 8999843333 33322211 3456667899999999854
No 326
>PRK13669 hypothetical protein; Provisional
Probab=51.33 E-value=40 Score=22.11 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHh
Q 042963 6 FLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 6 ~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~ 46 (171)
.+.+.+.-.|+-.|++.|| +++.-+-.++.++...+++++.
T Consensus 18 ~~~~~Le~dP~~dVie~gCls~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 18 AAFEKLEKDPNLDVLEYGCLGYCGICSEGLFALVNGEVVEGETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHHHHHhCCCceEEEcchhhhCcCcccCceEEECCeEeecCCHHHHHHHHHHHHhhc
Confidence 3345556689999999997 5555566677777777776553
No 327
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=51.19 E-value=42 Score=28.99 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=28.3
Q ss_pred HHHHHc-CCCCCCeEEEeCC---------------eEEEEcCCHHHHHHHHHHH
Q 042963 6 FLIEKA-RVSKGHDVLFLRL---------------DYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 6 ~ll~~l-~l~~g~rVLDIGc---------------~VtgId~S~~~~~~A~~~~ 43 (171)
.++..+ +..+-+.|.|||. .|.+||-|+...+.|++.-
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHH
Confidence 344443 4556689999995 8999999988888777653
No 328
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=97 Score=25.34 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=40.3
Q ss_pred cCCCCCCeEEEeCC--------------------eEEEEcCCHHHHHHHHHHH-HH-hchH-------------------
Q 042963 11 ARVSKGHDVLFLRL--------------------DYTGITLSEEQLKYTEMKV-KE-AGLQ------------------- 49 (171)
Q Consensus 11 l~l~~g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~~-~~-~gl~------------------- 49 (171)
+.+..+...+|+|. +.+.||+|...+....+.+ .+ .+++
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG 153 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC
Confidence 45566889999993 7999999999876544332 22 1222
Q ss_pred --------------------HHHHHHHhccccCcEEEE
Q 042963 50 --------------------QFFGCCESLLAEHGLLLL 67 (171)
Q Consensus 50 --------------------~~~~~~~r~LkpgG~l~i 67 (171)
.|+..+...|.||-.+++
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 677788888888887776
No 329
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.82 E-value=51 Score=26.56 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=41.8
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH---------------H--HhchH----
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV---------------K--EAGLQ---- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~---------------~--~~gl~---- 49 (171)
+..++..+|++||-.|| +|++++.++++.+.+++.- . ..+++
T Consensus 158 l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 158 VNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEE
Confidence 34455458999999874 6889999888877654321 0 01122
Q ss_pred -----HHHHHHHhccccCcEEEEE
Q 042963 50 -----QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -----~~~~~~~r~LkpgG~l~i~ 68 (171)
..++.+.+.|+++|+++..
T Consensus 238 ~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 238 ASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4678889999999998854
No 330
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=50.68 E-value=36 Score=27.46 Aligned_cols=58 Identities=10% Similarity=-0.077 Sum_probs=41.3
Q ss_pred CCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH----HH---hchH---------HHHHHHHhcc
Q 042963 13 VSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV----KE---AGLQ---------QFFGCCESLL 59 (171)
Q Consensus 13 l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~----~~---~gl~---------~~~~~~~r~L 59 (171)
..+|++||=+|| .|.++|.+++.++.|.+.. .+ .+++ ..++.+.+.|
T Consensus 142 ~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l 221 (308)
T TIGR01202 142 EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL 221 (308)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence 346889999995 4777898888887775431 11 1222 5678889999
Q ss_pred ccCcEEEEEcc
Q 042963 60 AEHGLLLLQFS 70 (171)
Q Consensus 60 kpgG~l~i~~i 70 (171)
+|||++++...
T Consensus 222 ~~~G~iv~~G~ 232 (308)
T TIGR01202 222 AKGGEIVLAGF 232 (308)
T ss_pred hcCcEEEEEee
Confidence 99999997654
No 331
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.39 E-value=18 Score=27.56 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=14.4
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
...+.+++.|+|.|+.++.
T Consensus 121 sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 121 SLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HHHHHHHHHhCcccceeEe
Confidence 4456788999999996654
No 332
>PRK10083 putative oxidoreductase; Provisional
Probab=50.29 E-value=59 Score=26.20 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHcCCCCCCeEEEeCC------------------eEEEEcCCHHHHHHHHHHH----------------HHhchH---
Q 042963 7 LIEKARVSKGHDVLFLRL------------------DYTGITLSEEQLKYTEMKV----------------KEAGLQ--- 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc------------------~VtgId~S~~~~~~A~~~~----------------~~~gl~--- 49 (171)
+.+..++++|++||=+|+ .|+++|.+++..+.+++.- ...+..
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 445678899999999883 4777888877776654321 111111
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+....+.|+++|+++...
T Consensus 232 vid~~g~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 232 IIDAACHPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 35677788999999988643
No 333
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=50.18 E-value=72 Score=25.25 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHHH--------------------HhchH-
Q 042963 8 IEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKVK--------------------EAGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~~--------------------~~gl~- 49 (171)
.+...+.+|.+||=.| ++|+.++.+++..+.++.... ..+++
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 238 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDV 238 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcE
Confidence 4557789999999888 388888888776665532110 01111
Q ss_pred -------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|+++|+++...
T Consensus 239 ~i~~~g~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 239 VVEHVGAATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EEECCcHHHHHHHHHHhhcCCEEEEEe
Confidence 34566778899999987654
No 334
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=49.87 E-value=63 Score=26.57 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHH----------------H----HhchH
Q 042963 7 LIEKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKV----------------K----EAGLQ 49 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~----------------~----~~gl~ 49 (171)
+.+..++.+|.+||-.|+ + |++++.+++..+.+++.- . ..+++
T Consensus 174 ~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCC
Confidence 345578899999999874 4 899998888777654220 0 01111
Q ss_pred ---------HHHHHHHhccccCcEEEEEc
Q 042963 50 ---------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|+++|+++...
T Consensus 254 ~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 254 YAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 45677788899999987654
No 335
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=49.47 E-value=87 Score=25.93 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=38.7
Q ss_pred cCCCCCCeEEEeCC----------------eEEEEcCCHHHHH-HHHHH-------------HHH--hchH---------
Q 042963 11 ARVSKGHDVLFLRL----------------DYTGITLSEEQLK-YTEMK-------------VKE--AGLQ--------- 49 (171)
Q Consensus 11 l~l~~g~rVLDIGc----------------~VtgId~S~~~~~-~A~~~-------------~~~--~gl~--------- 49 (171)
..+++|++||=.|+ +|+.++.+++... .+++. ..+ .+++
T Consensus 179 ~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~ 258 (360)
T PLN02586 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV 258 (360)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH
Confidence 34679999999995 7888887765432 22211 111 0222
Q ss_pred HHHHHHHhccccCcEEEEEcc
Q 042963 50 QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++...+.|++||+++....
T Consensus 259 ~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 259 HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred HHHHHHHHHhcCCcEEEEeCC
Confidence 467778899999999986543
No 336
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=49.40 E-value=62 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH----------HhchH---------HHHH
Q 042963 9 EKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK----------EAGLQ---------QFFG 53 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~----------~~gl~---------~~~~ 53 (171)
+...+++|.+||=.|| +|+.++.+++..+.+++.-. ..+++ ..++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~ 240 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGALVP 240 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHHHHH
Confidence 6778899999999884 89999999888777744210 01121 5678
Q ss_pred HHHhccccCcEEEEEc
Q 042963 54 CCESLLAEHGLLLLQF 69 (171)
Q Consensus 54 ~~~r~LkpgG~l~i~~ 69 (171)
.+.+.|+++|++++..
T Consensus 241 ~~~~~l~~~G~~v~~g 256 (329)
T cd08298 241 AALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 8899999999998754
No 337
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=48.93 E-value=55 Score=26.42 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH----------------HH----hchH--
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV----------------KE----AGLQ-- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~----------------~~----~gl~-- 49 (171)
....+++|++||-.|+ .|++++.+++..+.+++.- .. .+++
T Consensus 161 ~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 161 ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 3457889999999773 5778877776666554321 00 1111
Q ss_pred -------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+++..+.|+++|+++...
T Consensus 241 ld~~g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 241 IEAVGFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEccCCHHHHHHHHHHhhcCCEEEEEc
Confidence 46677889999999987543
No 338
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=48.36 E-value=64 Score=26.62 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH-------------------HhchH--
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK-------------------EAGLQ-- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~-------------------~~gl~-- 49 (171)
.+...+++|++||=.|+ .|+++|.+++..+.+++.-. ..+++
T Consensus 179 ~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred hhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 45567899999999883 69999988877766544210 01111
Q ss_pred -------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+..+.+.|+++|+++...
T Consensus 259 ld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 45677788889999987644
No 339
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=48.31 E-value=52 Score=27.44 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=30.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchHHHHHHHHhccccCcEEEEEc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQQFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l~i~~ 69 (171)
.|+=+|+|+-........ .+ .||+.+.+.|||||.++++.
T Consensus 197 dVii~dssdpvgpa~~lf-~~----~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALF-QK----PYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHH-HH----HHHHHHHHhhCCCcEEEEec
Confidence 788888887655533332 22 79999999999999998875
No 340
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=48.04 E-value=29 Score=34.51 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=42.4
Q ss_pred eCCeEEEEcCCHHHHHHHHHHHHHhchH-----HHHHHHHhccccCcEEEEEcccCCCc
Q 042963 22 LRLDYTGITLSEEQLKYTEMKVKEAGLQ-----QFFGCCESLLAEHGLLLLQFSSVPDQ 75 (171)
Q Consensus 22 IGc~VtgId~S~~~~~~A~~~~~~~gl~-----~~~~~~~r~LkpgG~l~i~~i~~~~~ 75 (171)
=||.+|+.|+.+.+++.-........+- ..++.+...|+++|.+++.....+.+
T Consensus 1208 ~gi~~t~~dl~~~~~E~~~h~v~~~d~l~~d~~~~le~~~~slre~GFLll~e~~~~~~ 1266 (2376)
T KOG1202|consen 1208 HGIRYTAKDLEAAQVEQQCHFVAQADLLVCDPAKALENCVASLREGGFLLLEELLSTYP 1266 (2376)
T ss_pred CCcEEEEeccchhHHHHhhhhhhccCeEecChHHHHHHHHHHHhcCCeEEEEhhccCCc
Confidence 3479999999999998776655443321 88999999999999999988766544
No 341
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=47.91 E-value=53 Score=27.78 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=44.0
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH----------------H----hchH-
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK----------------E----AGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~----------------~----~gl~- 49 (171)
+++.++++|++||=.|+ .|+.+|.+++-.+.|++.-. + .+++
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 45578899999998884 46667888766666554210 0 0111
Q ss_pred -------H---------------HHHHHHhccccCcEEEEEccc
Q 042963 50 -------Q---------------FFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 -------~---------------~~~~~~r~LkpgG~l~i~~i~ 71 (171)
. .++...+.+++||++++..+.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 2 688888999999999986654
No 342
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=47.70 E-value=15 Score=30.04 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=17.3
Q ss_pred CCCCeEEEeCC---------------eEEEEcCCHHHH
Q 042963 14 SKGHDVLFLRL---------------DYTGITLSEEQL 36 (171)
Q Consensus 14 ~~g~rVLDIGc---------------~VtgId~S~~~~ 36 (171)
-.|.||||+|| .|...|.+.+-+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 47899999998 566666666655
No 343
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=47.15 E-value=29 Score=30.77 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=39.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhchH------------------------------------HHHHHHHhccccCcEEEEE
Q 042963 25 DYTGITLSEEQLKYTEMKVKEAGLQ------------------------------------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~gl~------------------------------------~~~~~~~r~LkpgG~l~i~ 68 (171)
+|++-|++++.++..+.+++..+++ .|++...+.+..||.+.+.
T Consensus 136 ~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 136 QVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred hhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEecCCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 8999999999999999998766544 7889999999999999886
Q ss_pred c
Q 042963 69 F 69 (171)
Q Consensus 69 ~ 69 (171)
+
T Consensus 216 ~ 216 (525)
T KOG1253|consen 216 C 216 (525)
T ss_pred e
Confidence 5
No 344
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=44.18 E-value=1.7e+02 Score=24.75 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=19.9
Q ss_pred hhhhcccCCCcCCCHHHHHHHHHhcCC
Q 042963 86 FMKEYVFPGGCLPSLNRITSTMTSSSR 112 (171)
Q Consensus 86 ~~~~~ifp~~~lp~~~~l~~~~~~~g~ 112 (171)
.+.+.+||-+.+ +.+|+.+.+++.|+
T Consensus 155 ~l~~~ifPLg~~-~K~eVr~~A~~~gl 180 (360)
T PRK14665 155 ILQRMLLPMGGM-TKSEARAYAAERGF 180 (360)
T ss_pred HHhheeccCcCC-CHHHHHHHHHHCCC
Confidence 445568887776 47899999998884
No 345
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=42.67 E-value=68 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=38.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHH-----------hchH----------------------------------------HHHH
Q 042963 25 DYTGITLSEEQLKYTEMKVKE-----------AGLQ----------------------------------------QFFG 53 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~-----------~gl~----------------------------------------~~~~ 53 (171)
++|+|++.+++++.|++...- -|+. .++.
T Consensus 321 ~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~ 400 (482)
T KOG2352|consen 321 QITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQ 400 (482)
T ss_pred ceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHH
Confidence 999999999999999876310 1222 5667
Q ss_pred HHHhccccCcEEEEEcccCCCc
Q 042963 54 CCESLLAEHGLLLLQFSSVPDQ 75 (171)
Q Consensus 54 ~~~r~LkpgG~l~i~~i~~~~~ 75 (171)
.+..+|.|.|.+.|.-++...+
T Consensus 401 ~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 401 PVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred HHhhccCccceEEEEEecCCcc
Confidence 7888899999988877776543
No 346
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=42.15 E-value=26 Score=27.40 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=41.9
Q ss_pred CCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHHhchH--------------------------------
Q 042963 16 GHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKEAGLQ-------------------------------- 49 (171)
Q Consensus 16 g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~~gl~-------------------------------- 49 (171)
.+.+-|+|+ +|++|+.++.-.+.|.++..-.|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~E 112 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIEE 112 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhcc
Confidence 378899994 9999999999999999997555432
Q ss_pred ---HHHHHHHhccccCcEEEEEc
Q 042963 50 ---QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---~~~~~~~r~LkpgG~l~i~~ 69 (171)
.+++.+...|+-.+.++=+.
T Consensus 113 ~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 113 KQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred cccHHHHHHHHHhhcCCccccHH
Confidence 45667777888888876443
No 347
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=40.75 E-value=1.2e+02 Score=25.19 Aligned_cols=47 Identities=26% Similarity=0.262 Sum_probs=36.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHh-------c-hH--------------------------------------HHHHHHHh
Q 042963 24 LDYTGITLSEEQLKYTEMKVKEA-------G-LQ--------------------------------------QFFGCCES 57 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~~~~~~-------g-l~--------------------------------------~~~~~~~r 57 (171)
..|+-.|+++++++.++..+.+. | +. ++|+++-.
T Consensus 27 ~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~DlVIEAv~E~levK~~vf~~l~~ 106 (307)
T COG1250 27 YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEA 106 (307)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhccCCEEEEeccccHHHHHHHHHHHHh
Confidence 58999999999998888776433 1 10 78999999
Q ss_pred ccccCcEEEEEcc
Q 042963 58 LLAEHGLLLLQFS 70 (171)
Q Consensus 58 ~LkpgG~l~i~~i 70 (171)
+++|+-.|.-.+-
T Consensus 107 ~~~~~aIlASNTS 119 (307)
T COG1250 107 LAKPDAILASNTS 119 (307)
T ss_pred hcCCCcEEeeccC
Confidence 9999998876443
No 348
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=39.99 E-value=55 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=23.2
Q ss_pred HHcCCCCCCeEEE--eC------------CeEEEEcCCHHHHH
Q 042963 9 EKARVSKGHDVLF--LR------------LDYTGITLSEEQLK 37 (171)
Q Consensus 9 ~~l~l~~g~rVLD--IG------------c~VtgId~S~~~~~ 37 (171)
..+-++||+-|.| +| +.|.|-||+=.|+.
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 4456899999999 45 38999999988776
No 349
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=39.99 E-value=1.4e+02 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHH
Q 042963 24 LDYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~~~~~ 45 (171)
.+|+-+|.+++.++.+++++++
T Consensus 23 ~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 23 YEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHH
T ss_pred CcEEEEECChHHHHhhhhHHHH
Confidence 4999999999999999887654
No 350
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=39.97 E-value=1.1e+02 Score=24.70 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHHH-----------------HhchH-----
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKVK-----------------EAGLQ----- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~~-----------------~~gl~----- 49 (171)
++.+.+.+|++||=.|+ +|+.++.+++..+.+++.-. ..+++
T Consensus 156 ~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 156 LRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 35568899999999884 89999998877777643210 00111
Q ss_pred ----HHHHHHHhccccCcEEEEEc
Q 042963 50 ----QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ----~~~~~~~r~LkpgG~l~i~~ 69 (171)
..+....+.|+++|+++...
T Consensus 236 ~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 APNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCchHHHHHHHHHcccCCEEEEEe
Confidence 34566677788888887543
No 351
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=38.49 E-value=88 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHcCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHH
Q 042963 8 IEKARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEM 41 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~ 41 (171)
+.+.++++|++||=+|+ +|+++|.+++..+.+++
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34578899999999984 79999999888877654
No 352
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=38.44 E-value=2e+02 Score=22.90 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHH-------------h-chH-------
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKE-------------A-GLQ------- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~-------------~-gl~------- 49 (171)
+..+.++++++||=.|+ +|+.++.+++..+.+++.+.. . +++
T Consensus 155 ~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~ld~~g 234 (334)
T PRK13771 155 LRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKYADYVIVGSKFSEEVKKIGGADIVIETVG 234 (334)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCchhHHHHHHhcCCCcEEEEcCC
Confidence 34458889999999884 889999988887776543100 0 111
Q ss_pred -HHHHHHHhccccCcEEEEEc
Q 042963 50 -QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -~~~~~~~r~LkpgG~l~i~~ 69 (171)
.....+.+.|+++|+++...
T Consensus 235 ~~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 235 TPTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred hHHHHHHHHHHhcCCEEEEEe
Confidence 34566778888999987644
No 353
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.05 E-value=35 Score=27.45 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=32.3
Q ss_pred CCCCCeEEEeCCeEEEEcCCHHHHHHHHHHHHHhchH--------HHHHHHHhccccCcEEEEEcccCC
Q 042963 13 VSKGHDVLFLRLDYTGITLSEEQLKYTEMKVKEAGLQ--------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 13 l~~g~rVLDIGc~VtgId~S~~~~~~A~~~~~~~gl~--------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
+..|..|||||+.+...|--+.+....+...+..++. ...++..+..+ |+-+|-+++..
T Consensus 35 ~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~--G~~iINsIs~~ 101 (261)
T PRK07535 35 AEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK--GPPLINSVSAE 101 (261)
T ss_pred HHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC--CCCEEEeCCCC
Confidence 5889999999998654322222333333332222332 55555555444 66667777664
No 354
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=37.66 E-value=65 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.017 Sum_probs=26.2
Q ss_pred cCCCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHH
Q 042963 11 ARVSKGHDVLFLRL----------------DYTGITLSEEQLKYTEM 41 (171)
Q Consensus 11 l~l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~ 41 (171)
++..++++||=+|| +|+++|.+++-.+.+++
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45678999999995 89999999988887765
No 355
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=37.34 E-value=1.5e+02 Score=24.46 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH---------------------Hhch
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK---------------------EAGL 48 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~---------------------~~gl 48 (171)
+.+..++++|++||=+|+ .|++++.+++..+.+++.-. ..++
T Consensus 175 l~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 175 AVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCC
Confidence 345678999999999884 47888888777766543210 0011
Q ss_pred H---------HHHHHHHhccc-cCcEEEEEc
Q 042963 49 Q---------QFFGCCESLLA-EHGLLLLQF 69 (171)
Q Consensus 49 ~---------~~~~~~~r~Lk-pgG~l~i~~ 69 (171)
+ ..+....+.|+ ++|+++...
T Consensus 255 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAFEVIGSADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEEECCCCHHHHHHHHHHhccCCCEEEEEe
Confidence 1 45566778888 999988654
No 356
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=37.00 E-value=23 Score=26.71 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC-------eEEEEcCCHHHHHHHHHHHHHhchHHHHHHHHhccccCcEEE-EEc
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL-------DYTGITLSEEQLKYTEMKVKEAGLQQFFGCCESLLAEHGLLL-LQF 69 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc-------~VtgId~S~~~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l~-i~~ 69 (171)
-++.+++...+++| .++=||| +-.|-+-|.+. |+ .+|+.+...+++-|..+ +|+
T Consensus 6 ~~~El~~~a~l~~g-~i~VvGcSTSEV~G~~IGt~~s~ev---a~---------ai~~~l~~~~~~~gi~LA~Qc 67 (172)
T PF04260_consen 6 ALEELLEQANLKPG-QIFVVGCSTSEVAGERIGTASSLEV---AE---------AIFEALLEVLKERGIYLAFQC 67 (172)
T ss_dssp HHHHHHHHS---TT--EEEEEE-HHHHHTT-------HHH---HH---------HHHHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHhcCCCCC-CEEEEeeeHHHcCCcccCCCCcHHH---HH---------HHHHHHHHHHHHcCcEEEEEc
Confidence 46789999999999 6888998 22332222221 11 66788888898877754 555
No 357
>PF09386 ParD: Antitoxin ParD; InterPro: IPR018985 ParD is a plasmid anti-toxin than forms a ribbon-helix-helix DNA binding structure []. It stabilises plasmids by inhibiting ParE toxicity in cells that express ParD and ParE. ParD forms a dimer and also regulates its own promoter (parDE). ; PDB: 2AN7_A.
Probab=35.27 E-value=63 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=18.1
Q ss_pred EEEcCCHHHHHHHHHHHHHhchH
Q 042963 27 TGITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 27 tgId~S~~~~~~A~~~~~~~gl~ 49 (171)
..||++++|.+..+..++..|-+
T Consensus 4 LtIDiT~qQHQsLKAlAAlqGkT 26 (79)
T PF09386_consen 4 LTIDITDQQHQSLKALAALQGKT 26 (79)
T ss_dssp EEEEE-HHHHHHHHHHHHHHTS-
T ss_pred eeeeCCHHHHHHHHHHHHHcCCc
Confidence 46999999999999998887754
No 358
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.76 E-value=1.6e+02 Score=23.81 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=17.1
Q ss_pred CeEEEEcCCHHHHHHHHHHH
Q 042963 24 LDYTGITLSEEQLKYTEMKV 43 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~~~ 43 (171)
.+|+.+|.+++.++.+++++
T Consensus 29 ~~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 29 VDVLVFETTEELATAGRNRI 48 (286)
T ss_pred CEEEEEECCHHHHHHHHHHH
Confidence 49999999999999877664
No 359
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=34.45 E-value=1.3e+02 Score=23.34 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
+...+++|.+||=.|+ +|++++.+++..+.++
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 178 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR 178 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 4567889999999883 8899998888777654
No 360
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=34.35 E-value=1.6e+02 Score=23.80 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=41.0
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH-------H-------------hchH-
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK-------E-------------AGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~-------~-------------~gl~- 49 (171)
....++.+|.+||=.|+ +|++++.+++..+.+++.-. + .+++
T Consensus 159 ~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 159 VLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCE
Confidence 34567889999988873 68888888877665543210 0 0111
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..++.+.+.|+++|+++...
T Consensus 239 vld~~g~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 239 VIEAVGIPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEECCCCHHHHHHHHHhccCCcEEEEec
Confidence 34566778999999987644
No 361
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=33.96 E-value=2e+02 Score=22.67 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH--------------------HHhchH-
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV--------------------KEAGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~--------------------~~~gl~- 49 (171)
++.+.+++|++||=.|+ +|+.++-+.+..+.+++.- ...+++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISV 211 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcE
Confidence 35578899999998773 7777777776655543310 001222
Q ss_pred -------HHHHHHHhccccCcEEEEE
Q 042963 50 -------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~ 68 (171)
....++.+.|+++|+++..
T Consensus 212 v~d~~g~~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 212 ALDSVGGKLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EEECCCChhHHHHHHhhcCCcEEEEE
Confidence 3456677888888888754
No 362
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=33.91 E-value=1e+02 Score=26.14 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHcCCCCCCeEEEeCC-----------------------eEEEEcC----CHHHHHHHHHHH
Q 042963 5 SFLIEKARVSKGHDVLFLRL-----------------------DYTGITL----SEEQLKYTEMKV 43 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIGc-----------------------~VtgId~----S~~~~~~A~~~~ 43 (171)
.-+++.+.=++--+|+|+|. ++|||+. +..-++.+.++.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL 165 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRL 165 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHH
Confidence 34677777788889999993 9999999 777777776654
No 363
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=33.79 E-value=1.3e+02 Score=24.83 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=44.6
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH------------------H---hch
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK------------------E---AGL 48 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~------------------~---~gl 48 (171)
+.+..++++|++||=.|+ +|+++|.+++..+.+++.-. + .++
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCC
Confidence 345678999999999883 69999999888887754210 0 011
Q ss_pred H---------HHHHHHHhccccC-cEEEEEccc
Q 042963 49 Q---------QFFGCCESLLAEH-GLLLLQFSS 71 (171)
Q Consensus 49 ~---------~~~~~~~r~Lkpg-G~l~i~~i~ 71 (171)
+ ..+....+.+++| |++++....
T Consensus 259 d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 259 DYSFECTGNIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CEEEECCCChHHHHHHHHHhhcCCCEEEEECcC
Confidence 1 3456677888896 898875543
No 364
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=33.60 E-value=83 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.7
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
.||+.+.++|+++|.+.|.
T Consensus 106 ~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 106 GFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 8999999999999999885
No 365
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.93 E-value=75 Score=17.05 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=22.8
Q ss_pred EEEcCCHHHHHHHHHHHHHhchH--HHHHHH
Q 042963 27 TGITLSEEQLKYTEMKVKEAGLQ--QFFGCC 55 (171)
Q Consensus 27 tgId~S~~~~~~A~~~~~~~gl~--~~~~~~ 55 (171)
+.|.+++++.+...+.+++.|.+ .+++.+
T Consensus 2 iti~l~~~~~~~l~~~a~~~g~s~s~~ir~a 32 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELGRSRSELIREA 32 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred eEEEeCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 57889999999999999988876 444443
No 366
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=32.66 E-value=1.3e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~ 40 (171)
+...+++|++||=.| |+|++++.+++..+.++
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~ 182 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK 182 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 345788999999876 48999999888877664
No 367
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=52 Score=27.43 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=34.2
Q ss_pred CCCCeEEEeCCeEEEEcCCHHHHHHHHHHHHHhchH----------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 14 SKGHDVLFLRLDYTGITLSEEQLKYTEMKVKEAGLQ----------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 14 ~~g~rVLDIGc~VtgId~S~~~~~~A~~~~~~~gl~----------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
..+-+.||+||+|+.=++....--.-+...+..++. +-.=.++|.|.||-.+++..-+.+
T Consensus 136 gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp 211 (400)
T KOG0328|consen 136 GEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP 211 (400)
T ss_pred chhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc
Confidence 344578999997777666643211111112222221 222357899999999887665554
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.06 E-value=1.2e+02 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=12.9
Q ss_pred CeEEEEcCCHHHHHHHHH
Q 042963 24 LDYTGITLSEEQLKYTEM 41 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~ 41 (171)
.+|+|+|++++-++..++
T Consensus 24 ~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 24 HQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp SEEEEE-S-HHHHHHHHT
T ss_pred CEEEEEeCChHHHHHHhh
Confidence 399999999998877653
No 369
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.90 E-value=2.1e+02 Score=23.01 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHH------------------HHHhchH---
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMK------------------VKEAGLQ--- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~------------------~~~~gl~--- 49 (171)
++...+++|++||=.|+ +|++++.++ ..+.+++. ....+++
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVA 248 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEE
Confidence 45678899999999883 788877554 44444321 0011222
Q ss_pred -----HHHHHHHhccccCcEEEEE
Q 042963 50 -----QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 -----~~~~~~~r~LkpgG~l~i~ 68 (171)
..+..+.+.|+++|+++..
T Consensus 249 ~~~g~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 249 DVVGGPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred ecCCHHHHHHHHHHhccCCEEEEe
Confidence 5567788999999998753
No 370
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=31.61 E-value=1.6e+02 Score=24.01 Aligned_cols=61 Identities=20% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHcCC-CCCCeEEEeC----------------C-eEEEEcCCHHHHHHHHHHH-------------------H----Hhc
Q 042963 9 EKARV-SKGHDVLFLR----------------L-DYTGITLSEEQLKYTEMKV-------------------K----EAG 47 (171)
Q Consensus 9 ~~l~l-~~g~rVLDIG----------------c-~VtgId~S~~~~~~A~~~~-------------------~----~~g 47 (171)
..++. ++|++||=.| + +|++++.+++..+.+++.- . ..+
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCC
Confidence 44454 4899999887 4 8999998887766654320 0 011
Q ss_pred hH---------HHHHHHHhccccCcEEEEEc
Q 042963 48 LQ---------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 48 l~---------~~~~~~~r~LkpgG~l~i~~ 69 (171)
++ ..+....+.|+++|+++...
T Consensus 250 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASGHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence 22 45677889999999998644
No 371
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=31.60 E-value=1.4e+02 Score=24.61 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH------------------H---hch
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK------------------E---AGL 48 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~------------------~---~gl 48 (171)
+.+...+++|++||=+|+ +|+++|.+++..+.+++.-. + .++
T Consensus 178 ~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 178 VLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 345678999999999884 69999999888877653210 0 012
Q ss_pred H---------HHHHHHHhccccC-cEEEEEcc
Q 042963 49 Q---------QFFGCCESLLAEH-GLLLLQFS 70 (171)
Q Consensus 49 ~---------~~~~~~~r~Lkpg-G~l~i~~i 70 (171)
+ ..+....+.|+++ |++++...
T Consensus 258 d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 258 DYTFECIGNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred cEEEECCCChHHHHHHHHhhccCCCeEEEEcc
Confidence 1 3566777888887 88886544
No 372
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=31.06 E-value=61 Score=21.25 Aligned_cols=54 Identities=26% Similarity=0.231 Sum_probs=40.3
Q ss_pred EEEeCC----------------eEEEEcCCHHHHHHHHHHHHHhc---------------h-------------------
Q 042963 19 VLFLRL----------------DYTGITLSEEQLKYTEMKVKEAG---------------L------------------- 48 (171)
Q Consensus 19 VLDIGc----------------~VtgId~S~~~~~~A~~~~~~~g---------------l------------------- 48 (171)
+||+|| .++|+|+++.+++.++......+ +
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence 999997 48999999999998665541100 0
Q ss_pred ---HHHHHHHHhccccCcEEEEEcccC
Q 042963 49 ---QQFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 49 ---~~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
...+.++.+.|+|+|.+++.....
T Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 132 LPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 046678999999999998876544
No 373
>PRK13690 hypothetical protein; Provisional
Probab=30.78 E-value=44 Score=25.50 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---eEEEEcCCHH-HHHHHHHHHHHhchHHHHHHHHhccccCcEE-EEEc
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---DYTGITLSEE-QLKYTEMKVKEAGLQQFFGCCESLLAEHGLL-LLQF 69 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---~VtgId~S~~-~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l-~i~~ 69 (171)
-++.+++..++++| .+|=||| +|.|--+... -.+.|+ .+++.+..++++-|.. .+|+
T Consensus 13 ~~~El~~~a~l~~g-~i~VvGcSTSEV~G~~IGt~ss~eva~---------~i~~~l~~~~~~~gi~LA~Qc 74 (184)
T PRK13690 13 ILEELLEQANLKPG-QIFVLGCSTSEVLGERIGTAGSLEVAE---------AIVEALLEVLKETGIHLAVQG 74 (184)
T ss_pred HHHHHHHhhCCCCC-CEEEEecchHhhCCcccCCcChHHHHH---------HHHHHHHHHhhhcCcEEEEec
Confidence 46788999999999 6788999 5555443322 223333 5667788888887764 4554
No 374
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=30.74 E-value=1.7e+02 Score=24.00 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=41.0
Q ss_pred HcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHHH--------------------HhchH---
Q 042963 10 KARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKVK--------------------EAGLQ--- 49 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~~--------------------~~gl~--- 49 (171)
...+.+|.+||=.|+ + |++++.+++..+.+++.-. ..+++
T Consensus 182 ~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 182 AADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred cccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEE
Confidence 345689999998773 5 9999888887776543210 01111
Q ss_pred -----H-HHHHHHhccccCcEEEEEc
Q 042963 50 -----Q-FFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -----~-~~~~~~r~LkpgG~l~i~~ 69 (171)
. ..+.+.+.|+++|+++...
T Consensus 262 d~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 262 EALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 3 7788889999999987653
No 375
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=30.29 E-value=43 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=17.5
Q ss_pred HHHHHHHhccccCcEEEEEc
Q 042963 50 QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~ 69 (171)
.++-++-|+|+|||.++|.+
T Consensus 448 ~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 448 DILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHhHhhcCCCceEEEec
Confidence 66789999999999998864
No 376
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=30.16 E-value=1.8e+02 Score=27.19 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=35.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHHh-------c-hH--------------------------------------HHHHHHHhc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEA-------G-LQ--------------------------------------QFFGCCESL 58 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~-------g-l~--------------------------------------~~~~~~~r~ 58 (171)
+|+-+|.+++.++.+.+++.+. | ++ ++|+++.++
T Consensus 360 ~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~ 439 (737)
T TIGR02441 360 KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAV 439 (737)
T ss_pred cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhh
Confidence 9999999999999887765421 1 10 789999999
Q ss_pred cccCcEEEEEcc
Q 042963 59 LAEHGLLLLQFS 70 (171)
Q Consensus 59 LkpgG~l~i~~i 70 (171)
++|+..+.-.+-
T Consensus 440 ~~~~~ilasNTS 451 (737)
T TIGR02441 440 VPPHCIIASNTS 451 (737)
T ss_pred CCCCcEEEEcCC
Confidence 999998876443
No 377
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=29.80 E-value=1.5e+02 Score=24.34 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH-------H--------------hchH
Q 042963 8 IEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK-------E--------------AGLQ 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~-------~--------------~gl~ 49 (171)
.+..++++|++||=+|+ +|+++|.+++..+.+++.-. + .+++
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCC
Confidence 45678999999999884 69999999888777653210 0 0111
Q ss_pred ---------HHHHHHHhccccC-cEEEEEccc
Q 042963 50 ---------QFFGCCESLLAEH-GLLLLQFSS 71 (171)
Q Consensus 50 ---------~~~~~~~r~Lkpg-G~l~i~~i~ 71 (171)
..+....+.|+|+ |++++....
T Consensus 257 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 257 YSFECTGNADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred EEEECCCChHHHHHHHHhcccCCCEEEEEcCC
Confidence 4556777888885 998875543
No 378
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=29.21 E-value=56 Score=21.04 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=14.1
Q ss_pred EcCCHHHHHHHHHHHHHhchH
Q 042963 29 ITLSEEQLKYTEMKVKEAGLQ 49 (171)
Q Consensus 29 Id~S~~~~~~A~~~~~~~gl~ 49 (171)
|.++++|++..++.+.++|++
T Consensus 46 V~Lt~eqv~~LN~~l~~~Gf~ 66 (73)
T PF14794_consen 46 VFLTEEQVAKLNQALQKAGFD 66 (73)
T ss_dssp ----HHHHHHHHHHHHHTT--
T ss_pred EEcCHHHHHHHHHHHHHcCCC
Confidence 689999999999999998874
No 379
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=29.10 E-value=1.8e+02 Score=19.37 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=31.2
Q ss_pred EEEEcCCHH----HHHHHHHHHHHhchH------------------HHHHHHHhccccCcEEEEEcccCC
Q 042963 26 YTGITLSEE----QLKYTEMKVKEAGLQ------------------QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 26 VtgId~S~~----~~~~A~~~~~~~gl~------------------~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
++.-|++.+ -.....+.+...|+. ...+.+.++++|.|.+.+..++..
T Consensus 4 lV~YDI~~~~~~k~r~kv~k~L~~~G~~rvQ~SVf~~~~~~~~~~~~l~~~l~~~i~~~dsv~i~~l~~~ 73 (95)
T TIGR01573 4 LVVYDIPTDGERKRRRKLRKLLEKYGLQRVQYSVFEGILEPNQLARKLIERLKRIIPDEGDIRIYPLTEK 73 (95)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHcchhheeccEEEEEcCHHHHHHHHHHHHHHhCCCCCeEEEEEeChH
Confidence 355677755 445555556666643 255677888888899888776653
No 380
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=29.01 E-value=2.1e+02 Score=22.91 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHcCCCCCCeEEEeCC----------------e-EEEEcCCHHHHHHHHHHH--------------------HHhchH-
Q 042963 8 IEKARVSKGHDVLFLRL----------------D-YTGITLSEEQLKYTEMKV--------------------KEAGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc----------------~-VtgId~S~~~~~~A~~~~--------------------~~~gl~- 49 (171)
++.+++++|++||=.|+ + |++++-+++..+.+++.. ...+++
T Consensus 158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~ 237 (343)
T cd08235 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADV 237 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCE
Confidence 35568899999999884 5 888888888776653210 001111
Q ss_pred --------HHHHHHHhccccCcEEEEE
Q 042963 50 --------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~ 68 (171)
..+..+.+.|+++|+++..
T Consensus 238 vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 238 VIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred EEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 3566777888889888753
No 381
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=28.96 E-value=50 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHHHHhccccCcEEEEEcc
Q 042963 50 QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i 70 (171)
.+++-+++.|.|||++++.-+
T Consensus 67 ~l~~~~~~~l~pg~~lfVeY~ 87 (170)
T PF06557_consen 67 ELYKLFSRYLEPGGRLFVEYV 87 (170)
T ss_dssp HHHHHHHTT----SEEEEE-T
T ss_pred HHHHHHHHHhhhcCeEEEEEe
Confidence 788999999999999999643
No 382
>PLN02494 adenosylhomocysteinase
Probab=28.68 E-value=2.1e+02 Score=25.38 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=42.4
Q ss_pred HHHHHHHcCC-CCCCeEEEeC----------------CeEEEEcCCHHHHHHHHHH----------HHHhch-------H
Q 042963 4 VSFLIEKARV-SKGHDVLFLR----------------LDYTGITLSEEQLKYTEMK----------VKEAGL-------Q 49 (171)
Q Consensus 4 ~~~ll~~l~l-~~g~rVLDIG----------------c~VtgId~S~~~~~~A~~~----------~~~~gl-------~ 49 (171)
++-+++..++ -.|.+|+=+| |+|+.+|.++.....|... ++...+ .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~ 320 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNK 320 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCc
Confidence 3445555554 6799999998 4999999998654433211 111111 0
Q ss_pred H-HHHHHHhccccCcEEEEEc
Q 042963 50 Q-FFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ~-~~~~~~r~LkpgG~l~i~~ 69 (171)
. +.++..+.+||||+++...
T Consensus 321 ~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 321 DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred cchHHHHHhcCCCCCEEEEcC
Confidence 2 3577889999999998654
No 383
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.57 E-value=2.6e+02 Score=22.45 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=40.9
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH----------------H----hchH--
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK----------------E----AGLQ-- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~----------------~----~gl~-- 49 (171)
...++++|++||=.|| .|++++.+++..+.+++.-. + .+++
T Consensus 162 ~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~i 241 (345)
T cd08287 162 VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAV 241 (345)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEE
Confidence 3568889999998885 48888888765555443210 0 0111
Q ss_pred -------HHHHHHHhccccCcEEEEEcc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~i 70 (171)
..++.+.+.|+++|++++...
T Consensus 242 l~~~g~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 242 LECVGTQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred EECCCCHHHHHHHHHhhccCCEEEEecc
Confidence 456777888899999876543
No 384
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.36 E-value=94 Score=24.39 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=31.1
Q ss_pred hHHHHHHHHcCCCCCCeEEEeC---------------CeEEEEcCCHHHHHHHHHH
Q 042963 2 RKVSFLIEKARVSKGHDVLFLR---------------LDYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 2 ~k~~~ll~~l~l~~g~rVLDIG---------------c~VtgId~S~~~~~~A~~~ 42 (171)
.|.+.+.+.+.-..+.+||=+| |+||-+|+.+.|.-.....
T Consensus 31 ~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~ 86 (254)
T COG4017 31 KKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNN 86 (254)
T ss_pred HHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCC
Confidence 4566666666777889999999 6999999998887654433
No 385
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=27.88 E-value=1.6e+02 Score=24.05 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=7.7
Q ss_pred chhhhcccCCCcCCC
Q 042963 85 GFMKEYVFPGGCLPS 99 (171)
Q Consensus 85 ~~~~~~ifp~~~lp~ 99 (171)
++++.-.-||..+|+
T Consensus 233 DyIDDp~RpgavL~P 247 (285)
T COG1831 233 DYIDDPRRPGAVLGP 247 (285)
T ss_pred ccccCcccCCCcCCc
Confidence 344444456666654
No 386
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=27.78 E-value=48 Score=25.01 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC---eEEEEcCCHH-HHHHHHHHHHHhchHHHHHHHHhccccCcEEE-EEc
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL---DYTGITLSEE-QLKYTEMKVKEAGLQQFFGCCESLLAEHGLLL-LQF 69 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc---~VtgId~S~~-~~~~A~~~~~~~gl~~~~~~~~r~LkpgG~l~-i~~ 69 (171)
-++.+++..++++| .++=||| +|.|--+... -.+.|+ .+++.+..++++-|..+ +|+
T Consensus 6 ~~~El~~~a~l~~g-~i~VvGcSTSEV~G~~IG~~ss~eva~---------~i~~~l~~~~~~~gi~lA~Q~ 67 (172)
T TIGR01440 6 VLEELKDASNLKKG-DLFVIGCSTSEVIGGKIGTNSSMEVAE---------TIVNALDVVLKKTGVTLAFQG 67 (172)
T ss_pred HHHHHHHhhCCCCC-CEEEEecchHHhCCcccCCcChHHHHH---------HHHHHHHHHhhhcCeEEEEec
Confidence 46788999999999 6788999 5555444322 223333 55677777787877644 554
No 387
>COG3377 Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=12 Score=25.21 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=26.6
Q ss_pred HHHcCCCCCCeEEEeCCeEEEEcCCHHHH----HHHHHHHHHhch
Q 042963 8 IEKARVSKGHDVLFLRLDYTGITLSEEQL----KYTEMKVKEAGL 48 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc~VtgId~S~~~~----~~A~~~~~~~gl 48 (171)
|-.+++..-.+++|+.|+|+||---++|+ ......+.+.|+
T Consensus 38 CGyLnv~a~ek~gd~A~rv~GVrt~ddml~A~i~evT~~Ae~lGI 82 (95)
T COG3377 38 CGYLNVEAAEKVGDTAVRVVGVRTFDDMLSAPIVEVTSAAEELGI 82 (95)
T ss_pred ecceeHHHHHhhcceeeEEEeeeeHHHHhcchHHHHHHHHHHhCC
Confidence 34556666677889999999996555554 444445555554
No 388
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.56 E-value=58 Score=23.26 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.7
Q ss_pred CCCCeEEEeC---------------CeEEEEcCCHH
Q 042963 14 SKGHDVLFLR---------------LDYTGITLSEE 34 (171)
Q Consensus 14 ~~g~rVLDIG---------------c~VtgId~S~~ 34 (171)
..| +|.||| |.|+++|+.+.
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence 344 999999 58888888776
No 389
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.52 E-value=45 Score=24.01 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHcCCCCCCeEEEeCCeEEEEcCCHHHHHHHHHHHHHh----c------------------hHHHHHHHHhccccCcEEE
Q 042963 9 EKARVSKGHDVLFLRLDYTGITLSEEQLKYTEMKVKEA----G------------------LQQFFGCCESLLAEHGLLL 66 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc~VtgId~S~~~~~~A~~~~~~~----g------------------l~~~~~~~~r~LkpgG~l~ 66 (171)
++|+++||+.|-++|-. =|..++..+...+..-.. . +...+-.+.+.|.++|.+.
T Consensus 2 ~~LG~~~g~vVqE~g~D---dDvD~~lr~~Ie~~~g~~lvded~ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IW 78 (127)
T PF11253_consen 2 DKLGFKPGQVVQEFGWD---DDVDEDLREAIEDVTGEELVDEDYDDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIW 78 (127)
T ss_pred cccCCCCCCEEEEeCCC---ccccHHHHHHHHHHhCCccccCcccccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEE
Confidence 57999999999999931 022333333333322111 0 0044556678899999987
Q ss_pred EEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcC
Q 042963 67 LQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSS 111 (171)
Q Consensus 67 i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g 111 (171)
+.+ .... . | |+ ..++++.++...+|
T Consensus 79 vlt--PK~g--------r--------~-g~-V~~~~I~eaA~taG 103 (127)
T PF11253_consen 79 VLT--PKAG--------R--------P-GH-VEPSDIREAAPTAG 103 (127)
T ss_pred EEc--cCCC--------C--------C-CC-CCHHHHHHHHhhcC
Confidence 753 1110 0 1 12 34677888888887
No 390
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=27.34 E-value=36 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHhccccCcEEEEE
Q 042963 50 QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~ 68 (171)
.+|+.+++.++|||++.-.
T Consensus 71 e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 8999999999999998653
No 391
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=27.34 E-value=1.9e+02 Score=22.28 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=25.0
Q ss_pred HHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~ 40 (171)
+...+++|++||=.| ++|++++.+++..+.++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 162 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK 162 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 467899999998755 48999998887776653
No 392
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=27.15 E-value=1.8e+02 Score=24.31 Aligned_cols=58 Identities=22% Similarity=0.083 Sum_probs=38.1
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHH-HHHHHHH-------------HHH--hchH---------HH
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQ-LKYTEMK-------------VKE--AGLQ---------QF 51 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~-~~~A~~~-------------~~~--~gl~---------~~ 51 (171)
.++|++||=.|+ +|+.+|.+++. .+.+++. ..+ .+++ ..
T Consensus 176 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~ 255 (375)
T PLN02178 176 KESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255 (375)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH
Confidence 368999999884 78888877543 4444321 111 0122 35
Q ss_pred HHHHHhccccCcEEEEEcc
Q 042963 52 FGCCESLLAEHGLLLLQFS 70 (171)
Q Consensus 52 ~~~~~r~LkpgG~l~i~~i 70 (171)
++...+.|++||+++....
T Consensus 256 ~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 256 LLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred HHHHHHhhcCCCEEEEEcc
Confidence 7788899999999987554
No 393
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.06 E-value=2.1e+02 Score=22.77 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=14.7
Q ss_pred CeEEEEcCCHHHHHHHHH
Q 042963 24 LDYTGITLSEEQLKYTEM 41 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~ 41 (171)
.+|+.+|.+++.++.+++
T Consensus 27 ~~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 27 YDVVMVDISDAAVDRGLA 44 (282)
T ss_pred CceEEEeCCHHHHHHHHH
Confidence 389999999999876553
No 394
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.65 E-value=3.8e+02 Score=23.14 Aligned_cols=64 Identities=6% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHHcC-CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHH----------HHHhch-------HHH
Q 042963 6 FLIEKAR-VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMK----------VKEAGL-------QQF 51 (171)
Q Consensus 6 ~ll~~l~-l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~----------~~~~gl-------~~~ 51 (171)
-+++.-+ ..+|.+|+=+|+ +|+.+|.++.....|... ++...+ ...
T Consensus 184 ~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~v 263 (406)
T TIGR00936 184 GILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDV 263 (406)
T ss_pred HHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHH
Confidence 3444444 368999999994 999999888654443321 111110 044
Q ss_pred HH-HHHhccccCcEEEEEc
Q 042963 52 FG-CCESLLAEHGLLLLQF 69 (171)
Q Consensus 52 ~~-~~~r~LkpgG~l~i~~ 69 (171)
+. +....+|||++++...
T Consensus 264 I~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANIG 282 (406)
T ss_pred HHHHHHhcCCCCcEEEEEC
Confidence 54 4778999999987643
No 395
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=26.55 E-value=1.6e+02 Score=23.61 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=29.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHH--------------------hchH--------HHHHHHHhccccCcEEEEEc
Q 042963 25 DYTGITLSEEQLKYTEMKVKE--------------------AGLQ--------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~--------------------~gl~--------~~~~~~~r~LkpgG~l~i~~ 69 (171)
+|++++.|++..+.+++.-.. .+++ .......+.|++||+++...
T Consensus 170 ~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 170 KVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEE
Confidence 899999998887777543100 0111 33455678889999987654
No 396
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.46 E-value=2.4e+02 Score=23.46 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=15.1
Q ss_pred eEEEEcCCHHHHHHHHHH
Q 042963 25 DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~ 42 (171)
+|+..|.+++..+.+++.
T Consensus 32 ~V~l~D~~~~~~~~~~~~ 49 (321)
T PRK07066 32 DVVAWDPAPGAEAALRAN 49 (321)
T ss_pred eEEEEeCCHHHHHHHHHH
Confidence 999999999988776553
No 397
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=26.16 E-value=70 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCCCCeEE
Q 042963 4 VSFLIEKARVSKGHDVL 20 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVL 20 (171)
++..|.++|+++|++|-
T Consensus 45 v~~~L~~~G~~~GD~V~ 61 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVR 61 (69)
T ss_pred HHHHHHHcCCCCCCEEE
Confidence 56778889999999874
No 398
>PLN02702 L-idonate 5-dehydrogenase
Probab=26.11 E-value=2.3e+02 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=24.2
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
+..++.+|++||=+|+ .|+++|.+++..+.++
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 223 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK 223 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 5678899999999884 4788888776665544
No 399
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.82 E-value=55 Score=20.19 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=13.3
Q ss_pred HHHHHhccccCcEEEEE
Q 042963 52 FGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 52 ~~~~~r~LkpgG~l~i~ 68 (171)
++++.+++..||++++.
T Consensus 53 ~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 53 AEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 45677888899999874
No 400
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=25.65 E-value=3e+02 Score=20.80 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=25.5
Q ss_pred HHHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHH
Q 042963 8 IEKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEM 41 (171)
Q Consensus 8 l~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~ 41 (171)
.+...+++|++||=+| ++|+.++.+++..+.+++
T Consensus 101 ~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 151 (293)
T cd05195 101 VDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRE 151 (293)
T ss_pred HHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3456789999999886 388888888777666543
No 401
>PF12449 DUF3684: Protein of unknown function (DUF3684) ; InterPro: IPR022155 This domain family is found in eukaryotes, and is typically between 1072 and 1090 amino acids in length.
Probab=25.14 E-value=1.6e+02 Score=28.79 Aligned_cols=62 Identities=11% Similarity=0.341 Sum_probs=37.6
Q ss_pred HHHHHHHhccccCcEEEEEcccCCCcccccccCccchhhhcccCCCcCCCHHHHHHHHHhcCCcchhhhcCCCHHHHHHH
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVPDQCYDEHRLSPGFMKEYVFPGGCLPSLNRITSTMTSSSRLCEILDLGFSEKFLRTW 129 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~~~~~~~~~~~~~~~~~~ifp~~~lp~~~~l~~~~~~~g~~~~i~~~~~~~~~~r~w 129 (171)
.+|+.+.--++|+||++|-.-++....+.. . +-.-..+|+++ +. ..++.+++.+.|
T Consensus 195 ~IF~~vlP~k~~~GRIFIGFpT~QTTG~~~------H----isAps~IPTVE-------RE-------SIDlnaR~V~~W 250 (1093)
T PF12449_consen 195 DIFASVLPSKKPQGRIFIGFPTHQTTGLGA------H----ISAPSFIPTVE-------RE-------SIDLNARYVRTW 250 (1093)
T ss_pred HHHHhhcCCCCCCceEEEecccccccccce------E----eccCCcCcccc-------hh-------hhccccHHHHHH
Confidence 788888888899999999665554322211 1 11113456542 22 245677888888
Q ss_pred HHHHHH
Q 042963 130 EYYFDY 135 (171)
Q Consensus 130 ~~yl~~ 135 (171)
+.-|..
T Consensus 251 N~ElLr 256 (1093)
T PF12449_consen 251 NIELLR 256 (1093)
T ss_pred HHHHHH
Confidence 876654
No 402
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=25.07 E-value=2.3e+02 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=23.1
Q ss_pred HcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 10 KARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 10 ~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
...+.+|.+||=.|+ +|+.++-+++..+.++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 180 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK 180 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH
Confidence 345789999998873 7888888777666654
No 403
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=24.83 E-value=3.6e+02 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHhccccCcEEEEEccc
Q 042963 50 QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
..++.+.+...||+.+++..+.
T Consensus 178 ~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 178 ALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHHHHHHhCCCCcEEEEEecc
Confidence 6677787777789988876544
No 404
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.25 E-value=2.7e+02 Score=22.01 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeCC--------------eEEEEcCCHHHHHHHHHHHHH
Q 042963 3 KVSFLIEKARVSKGHDVLFLRL--------------DYTGITLSEEQLKYTEMKVKE 45 (171)
Q Consensus 3 k~~~ll~~l~l~~g~rVLDIGc--------------~VtgId~S~~~~~~A~~~~~~ 45 (171)
.+.++++. .-.+|+.|||-=+ ..+|++++++.++.+.++...
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 35566666 7899999999632 899999999999999998753
No 405
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=24.21 E-value=3.6e+02 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 7 LIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 7 ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
+.+.+.+++|++||=.|. +|++++.+++..+.++
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~ 184 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR 184 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 345677899999999882 8888888887776654
No 406
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=24.20 E-value=4e+02 Score=21.81 Aligned_cols=59 Identities=24% Similarity=0.134 Sum_probs=39.3
Q ss_pred CCCCCeEEEeCC----------------eEEEEcCCHHHHHHHHHHH--------------HH--hchH---------HH
Q 042963 13 VSKGHDVLFLRL----------------DYTGITLSEEQLKYTEMKV--------------KE--AGLQ---------QF 51 (171)
Q Consensus 13 l~~g~rVLDIGc----------------~VtgId~S~~~~~~A~~~~--------------~~--~gl~---------~~ 51 (171)
+++|++||=+|+ +|+.++.+++..+.+.+.. .+ .+++ ..
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~ 257 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP 257 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH
Confidence 479999998883 7888888876654443210 00 1222 45
Q ss_pred HHHHHhccccCcEEEEEccc
Q 042963 52 FGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 52 ~~~~~r~LkpgG~l~i~~i~ 71 (171)
++.+.+.|++||+++.....
T Consensus 258 ~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 258 LEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred HHHHHHHhccCCEEEEECCC
Confidence 67788999999999876543
No 407
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=24.04 E-value=2.7e+02 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.022 Sum_probs=15.9
Q ss_pred CCeEEEeCC----------eEEEEcCCHHHHHHHH
Q 042963 16 GHDVLFLRL----------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 16 g~rVLDIGc----------~VtgId~S~~~~~~A~ 40 (171)
+.-++|+|+ +..-++.+++|.+.-+
T Consensus 92 ~~vl~d~G~~y~gY~sditRT~~v~p~~~~~~~y~ 126 (243)
T cd01091 92 GVIICSLGARYKSYCSNIARTFLIDPTSEQQKNYN 126 (243)
T ss_pred CEEEEEeCcccCCEeecceEEEEcCCCHHHHHHHH
Confidence 445779994 5555678877765433
No 408
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=23.93 E-value=1.2e+02 Score=19.53 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=18.9
Q ss_pred HHHHHHHhccccCcEEEEEcccC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.+++.+.+.|..|+.+-+..++.
T Consensus 27 ~l~~~i~~~L~~g~~V~i~g~G~ 49 (90)
T smart00411 27 AFLEIITEALKKGEKVELRGFGT 49 (90)
T ss_pred HHHHHHHHHHhCCCeEEEeCcEE
Confidence 77888999999999988876543
No 409
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.91 E-value=2.7e+02 Score=25.82 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=34.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHHh-------c-hH--------------------------------------HHHHHHHhc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEA-------G-LQ--------------------------------------QFFGCCESL 58 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~-------g-l~--------------------------------------~~~~~~~r~ 58 (171)
+|+-+|.+++.++.+.+++.+. + +. ++|+++.++
T Consensus 335 ~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~~~~K~~v~~~le~~ 414 (708)
T PRK11154 335 PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEVEQN 414 (708)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccccHHHHHHHHHHHHhh
Confidence 7999999999998887664321 1 00 789999999
Q ss_pred cccCcEEEEEc
Q 042963 59 LAEHGLLLLQF 69 (171)
Q Consensus 59 LkpgG~l~i~~ 69 (171)
++|+..+.-.+
T Consensus 415 ~~~~~ilasnT 425 (708)
T PRK11154 415 CAPHTIFASNT 425 (708)
T ss_pred CCCCcEEEECC
Confidence 99998887544
No 410
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=23.08 E-value=2.9e+02 Score=23.66 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=34.1
Q ss_pred HHHHHHcCCCCCCeEEEeC------------------------CeEEEEcCCHHHHHHHHHHHHHh
Q 042963 5 SFLIEKARVSKGHDVLFLR------------------------LDYTGITLSEEQLKYTEMKVKEA 46 (171)
Q Consensus 5 ~~ll~~l~l~~g~rVLDIG------------------------c~VtgId~S~~~~~~A~~~~~~~ 46 (171)
-.+++.++.++.-.++||| |++.-|++|++..+.=+++.+..
T Consensus 67 ~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 67 LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4567778888888999999 49999999999988777766544
No 411
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=22.98 E-value=65 Score=20.32 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHHHcCCCCCCeEE
Q 042963 4 VSFLIEKARVSKGHDVL 20 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVL 20 (171)
+...|.++++++|++|-
T Consensus 45 v~~~L~~~G~~~GD~V~ 61 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVR 61 (69)
T ss_dssp HHHHHHTTT--TT-EEE
T ss_pred HHHHHHHcCCCCCCEEE
Confidence 45677888999999874
No 412
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=22.88 E-value=92 Score=20.04 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.3
Q ss_pred HHHHHHHhccccCcEEEEEccc
Q 042963 50 QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.+++.+...|..|+.+-+..++
T Consensus 27 ~~~~~i~~~L~~g~~V~l~g~G 48 (90)
T PF00216_consen 27 ALFDVIKEALKEGESVKLPGFG 48 (90)
T ss_dssp HHHHHHHHHHHTT-EEEETTTE
T ss_pred HHHHHHHHHHhcCCeEEeecee
Confidence 7788899999999998876543
No 413
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=22.87 E-value=4.1e+02 Score=22.31 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHHHhchH-----------------
Q 042963 4 VSFLIEKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVKEAGLQ----------------- 49 (171)
Q Consensus 4 ~~~ll~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~~~gl~----------------- 49 (171)
+..+-+..++++|+.|.-=|+ +-+.|=.+..-++..++..+..|.+
T Consensus 149 yrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~ 228 (354)
T KOG0025|consen 149 YRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFK 228 (354)
T ss_pred HHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhh
Confidence 345567789999999998883 4455556666777777776666543
Q ss_pred ---------------HHHHHHHhccccCcEEEEEc
Q 042963 50 ---------------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 ---------------~~~~~~~r~LkpgG~l~i~~ 69 (171)
..-.++.+.|..||.++-..
T Consensus 229 ~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYG 263 (354)
T KOG0025|consen 229 GDNPRPRLALNCVGGKSATEIARYLERGGTMVTYG 263 (354)
T ss_pred ccCCCceEEEeccCchhHHHHHHHHhcCceEEEec
Confidence 34457889999999988654
No 414
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=22.80 E-value=3e+02 Score=22.01 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHH----------------H----HhchH--
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKV----------------K----EAGLQ-- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~----------------~----~~gl~-- 49 (171)
..+++++|++||=.|+ +|+.++-+++..+.+++.- . ..+++
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~v 238 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAV 238 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEE
Confidence 3458899999998772 8888888877666553210 0 01111
Q ss_pred -------HHHHHHHhccccCcEEEEEc
Q 042963 50 -------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 -------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.....+.+.|+++|+++...
T Consensus 239 l~~~~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 239 VVTAVSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EEcCCchHHHHHHHHHhhcCCEEEEec
Confidence 45566778888999988653
No 415
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=22.50 E-value=3.5e+02 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=16.9
Q ss_pred CCCCCe-EEEeCC----------eEEEE--cCCHHHHHHHHH
Q 042963 13 VSKGHD-VLFLRL----------DYTGI--TLSEEQLKYTEM 41 (171)
Q Consensus 13 l~~g~r-VLDIGc----------~VtgI--d~S~~~~~~A~~ 41 (171)
+++|+- ++|+|| +...+ ++++++.+..+.
T Consensus 70 l~~Gd~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~ 111 (243)
T cd01087 70 LKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEA 111 (243)
T ss_pred CCCCCEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHH
Confidence 455654 579995 33334 567776654443
No 416
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=22.20 E-value=90 Score=19.33 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=13.9
Q ss_pred HHHcCCCCCCeEEEeCC
Q 042963 8 IEKARVSKGHDVLFLRL 24 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc 24 (171)
.+.+++++|+.|+.|+-
T Consensus 25 a~~aGl~~GD~I~~Ing 41 (80)
T cd00990 25 ADKAGLVAGDELVAVNG 41 (80)
T ss_pred HHHhCCCCCCEEEEECC
Confidence 45678999999998874
No 417
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=21.99 E-value=4e+02 Score=21.02 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=39.8
Q ss_pred HHcCCCCCCeEEEeC-----------------CeEEEEcCCHHHHHHHHHHHH-----------------H---hchH--
Q 042963 9 EKARVSKGHDVLFLR-----------------LDYTGITLSEEQLKYTEMKVK-----------------E---AGLQ-- 49 (171)
Q Consensus 9 ~~l~l~~g~rVLDIG-----------------c~VtgId~S~~~~~~A~~~~~-----------------~---~gl~-- 49 (171)
+...+.+|++||=.| ++|++++.+++..+.+++... . .+++
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~v 218 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVY 218 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEE
Confidence 345688999999888 288899888877776654110 0 0111
Q ss_pred ------HHHHHHHhccccCcEEEEE
Q 042963 50 ------QFFGCCESLLAEHGLLLLQ 68 (171)
Q Consensus 50 ------~~~~~~~r~LkpgG~l~i~ 68 (171)
..++...+.|+++|+++..
T Consensus 219 i~~~g~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 219 FDNVGGEILDAALTLLNKGGRIALC 243 (329)
T ss_pred EEcchHHHHHHHHHhcCCCceEEEE
Confidence 3456677888888887643
No 418
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=21.93 E-value=3.9e+02 Score=21.54 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHHHHHH----------------H--h-chH-------
Q 042963 13 VSKGHDVLFLRL-----------------DYTGITLSEEQLKYTEMKVK----------------E--A-GLQ------- 49 (171)
Q Consensus 13 l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~~~~~----------------~--~-gl~------- 49 (171)
+++|++||-.|+ +|+.++.+++..+.+++.-. + . +++
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g 252 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN 252 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC
Confidence 458899999883 68888888887776543210 0 0 111
Q ss_pred --HHHHHHHhccccCcEEEEEc
Q 042963 50 --QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --~~~~~~~r~LkpgG~l~i~~ 69 (171)
.....+.+.|+++|+++...
T Consensus 253 ~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 253 NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CHHHHHHHHHHhhcCCeEEEEC
Confidence 34566778888888887543
No 419
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=21.92 E-value=50 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=18.3
Q ss_pred CCCCCeEEEeCC-----------------eEEEEcCCH
Q 042963 13 VSKGHDVLFLRL-----------------DYTGITLSE 33 (171)
Q Consensus 13 l~~g~rVLDIGc-----------------~VtgId~S~ 33 (171)
|.++..|||++| -|+|||+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 689999999997 799999864
No 420
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.82 E-value=1.5e+02 Score=25.50 Aligned_cols=44 Identities=30% Similarity=0.328 Sum_probs=35.9
Q ss_pred HHHHHHc-CCCCCCeEEEeCC--eEEEEcCCHHHHHHHHHHHHHhch
Q 042963 5 SFLIEKA-RVSKGHDVLFLRL--DYTGITLSEEQLKYTEMKVKEAGL 48 (171)
Q Consensus 5 ~~ll~~l-~l~~g~rVLDIGc--~VtgId~S~~~~~~A~~~~~~~gl 48 (171)
+-++..| .+++|+-||==|| .=||+|++.+|.+..-+..++.++
T Consensus 160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l 206 (396)
T COG1448 160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL 206 (396)
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4444444 5788999999998 899999999999998888887764
No 421
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=21.55 E-value=4e+02 Score=20.78 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHcCCCCCCeEEEeC----------------Ce-EEEEcCCHHHHHHHHHHHH--------------------HhchH-
Q 042963 8 IEKARVSKGHDVLFLR----------------LD-YTGITLSEEQLKYTEMKVK--------------------EAGLQ- 49 (171)
Q Consensus 8 l~~l~l~~g~rVLDIG----------------c~-VtgId~S~~~~~~A~~~~~--------------------~~gl~- 49 (171)
+....+++|++||=.| ++ |+.++-+++..+.+++.-. ..+++
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~ 201 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADV 201 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCE
Confidence 3467789999999877 36 9888888777665432100 01111
Q ss_pred --------HHHHHHHhccccCcEEEEEc
Q 042963 50 --------QFFGCCESLLAEHGLLLLQF 69 (171)
Q Consensus 50 --------~~~~~~~r~LkpgG~l~i~~ 69 (171)
.......+.|+++|+++...
T Consensus 202 vld~~g~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 202 VIEAVGHQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 35667778899999988654
No 422
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=21.27 E-value=3.4e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHcCCCCCCeEEEeCC-----------------eEEEEcCCHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL-----------------DYTGITLSEEQLKYTE 40 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc-----------------~VtgId~S~~~~~~A~ 40 (171)
+.+.+++|++||=.|+ .|+++|.+++..+.+.
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 216 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH
Confidence 5678899999988773 5788888877666544
No 423
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.15 E-value=37 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=16.4
Q ss_pred ccchhhhcccCCCcCCCHHHHHHHH
Q 042963 83 SPGFMKEYVFPGGCLPSLNRITSTM 107 (171)
Q Consensus 83 ~~~~~~~~ifp~~~lp~~~~l~~~~ 107 (171)
..+|+..|+-..|+.||..||.+.+
T Consensus 11 vL~~I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 11 VLEFIREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp HHHHHHHHHHHHSS---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4467777777778889998888776
No 424
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=21.06 E-value=1.4e+02 Score=19.82 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=18.3
Q ss_pred HHHHHHHhccccCcEEEEEccc
Q 042963 50 QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.+++.+...|+.|+.+-|..++
T Consensus 27 ~~~~~i~~~L~~~~~v~l~gfG 48 (90)
T PRK10664 27 AIIASVTESLKEGDDVALVGFG 48 (90)
T ss_pred HHHHHHHHHHhCCCEEEECCcE
Confidence 7888999999999998876543
No 425
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=20.83 E-value=1e+02 Score=19.43 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHcCCCCCCeEEEeCC
Q 042963 8 IEKARVSKGHDVLFLRL 24 (171)
Q Consensus 8 l~~l~l~~g~rVLDIGc 24 (171)
.+++++++|+.|+.|.-
T Consensus 23 a~~aGL~~GDiI~~Ing 39 (79)
T cd00991 23 AENAVLHTGDVIYSING 39 (79)
T ss_pred HHhcCCCCCCEEEEECC
Confidence 45689999999999874
No 426
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=20.64 E-value=2e+02 Score=24.17 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHcCCCCCCeEEEeCC--------------------eEEEEcCCHHHHHHHHHH
Q 042963 9 EKARVSKGHDVLFLRL--------------------DYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 9 ~~l~l~~g~rVLDIGc--------------------~VtgId~S~~~~~~A~~~ 42 (171)
++.++++|++||=+|+ +|+++|.+++.++.|++.
T Consensus 169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4567899999998872 589999999988888774
No 427
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=20.55 E-value=1.4e+02 Score=19.81 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=18.4
Q ss_pred HHHHHHHhccccCcEEEEEccc
Q 042963 50 QFFGCCESLLAEHGLLLLQFSS 71 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~ 71 (171)
.++..+.+.|+.|+.+-+..++
T Consensus 28 ~~~~~i~~~L~~g~~V~l~gfG 49 (96)
T TIGR00987 28 LFFEEIRRALENGEQVKLSGFG 49 (96)
T ss_pred HHHHHHHHHHHcCCeEEecCCE
Confidence 7888999999999998876543
No 428
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=20.51 E-value=1.1e+02 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHHHHHHhccccCcEEEEEcccCC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSVP 73 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~~ 73 (171)
+.++++.+.++|||++++-+...+
T Consensus 315 ~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 315 EEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred HHHHHHHHHhCCCCEEEEeeCCCC
Confidence 678899999999999998654443
No 429
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=20.49 E-value=1.7e+02 Score=18.64 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHHhccccCcEEEEEcccC
Q 042963 50 QFFGCCESLLAEHGLLLLQFSSV 72 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l~i~~i~~ 72 (171)
.++..+...|..|+.+-+..++.
T Consensus 26 ~~~~~i~~~L~~g~~V~l~~~G~ 48 (87)
T cd00591 26 AFLDVITEALAKGEKVELPGFGT 48 (87)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEE
Confidence 77888999999999988876543
No 430
>PRK05716 methionine aminopeptidase; Validated
Probab=20.33 E-value=2e+02 Score=22.30 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=10.1
Q ss_pred HHHHHHHhccccCcEE
Q 042963 50 QFFGCCESLLAEHGLL 65 (171)
Q Consensus 50 ~~~~~~~r~LkpgG~l 65 (171)
++.+.+.+.++..|.-
T Consensus 146 dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 146 DIGHAIQKYAEAEGFS 161 (252)
T ss_pred HHHHHHHHHHHHcCCe
Confidence 6666666666665543
No 431
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.12 E-value=3.5e+02 Score=25.10 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=34.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHh-------c-hH--------------------------------------HHHHHHHhc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEA-------G-LQ--------------------------------------QFFGCCESL 58 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~-------g-l~--------------------------------------~~~~~~~r~ 58 (171)
+|+-+|.+++.++.+.+++++. | ++ ++|+++.++
T Consensus 338 ~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~ 417 (715)
T PRK11730 338 PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQK 417 (715)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCcHHHHHHHHHHHHhh
Confidence 9999999999998887665321 1 00 788999999
Q ss_pred cccCcEEEEEc
Q 042963 59 LAEHGLLLLQF 69 (171)
Q Consensus 59 LkpgG~l~i~~ 69 (171)
++|+-.+.-.+
T Consensus 418 ~~~~~ilasNT 428 (715)
T PRK11730 418 VREDTILASNT 428 (715)
T ss_pred CCCCcEEEEcC
Confidence 99998776544
No 432
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.06 E-value=4.5e+02 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.1
Q ss_pred CeEEEEcCCHHHHHHHHHH
Q 042963 24 LDYTGITLSEEQLKYTEMK 42 (171)
Q Consensus 24 c~VtgId~S~~~~~~A~~~ 42 (171)
.+|+.+|.+++.++.++++
T Consensus 25 ~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 25 FQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred CcEEEEeCCHHHHHHHHHH
Confidence 4899999999999887653
No 433
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=20.03 E-value=3.4e+02 Score=25.19 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHHh-------c-hH--------------------------------------HHHHHHHhc
Q 042963 25 DYTGITLSEEQLKYTEMKVKEA-------G-LQ--------------------------------------QFFGCCESL 58 (171)
Q Consensus 25 ~VtgId~S~~~~~~A~~~~~~~-------g-l~--------------------------------------~~~~~~~r~ 58 (171)
+|+-+|.+++.++.+++++.+. | ++ ++|+++.++
T Consensus 338 ~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~ 417 (714)
T TIGR02437 338 PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417 (714)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCcccHHHHHHHHHHHHhh
Confidence 9999999999999887765321 1 00 789999999
Q ss_pred cccCcEEEEEc
Q 042963 59 LAEHGLLLLQF 69 (171)
Q Consensus 59 LkpgG~l~i~~ 69 (171)
++|+..|.-.+
T Consensus 418 ~~~~~ilasnT 428 (714)
T TIGR02437 418 VREDAILASNT 428 (714)
T ss_pred CCCCcEEEECC
Confidence 99998887544
Done!