BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042966
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L + AS ++I+KAYR+ A +HPDK P KE A + F+ + EAYE+LSD++KR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDK--NPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 74 LIYDIYGMEGLTSGLELGP 92
IYD YG EGLT G GP
Sbjct: 63 EIYDRYGREGLT-GTGTGP 80
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSD 69
++ Y L L+ ASDEEI++AYR+ A YHPDK + P A E F+ I EAY++LSD
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSD 57
Query: 70 ENKRLIYDIYGMEGLTS 86
KR I+D YG EGL
Sbjct: 58 PRKREIFDRYGEEGLKG 74
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDEN 71
+LY LL +SP A+++E++K YR+ A YHPDK TE F+ I EA+EIL+D
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD------TEKFKEISEAFEILNDPQ 62
Query: 72 KRLIYDIYGMEGLTS 86
KR IYD YG+E S
Sbjct: 63 KREIYDQYGLEAARS 77
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDEN 71
+ Y +L + +AS E I+KAYR+ A +HPDK P KE A F+++ EAYE+LSD
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDK--NPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 72 KRLIYDIYGMEGLTSG 87
KR IYD YG G +SG
Sbjct: 68 KRDIYDRYG-SGPSSG 82
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L + P+ASD E++KAYR+ A +HPDK P E F++I +AYE+LSDE KR
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK--NPD----GAEQFKQISQAYEVLSDEKKR 64
Query: 74 LIYDIYGME 82
IYD G E
Sbjct: 65 QIYDQGGEE 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L + AS+ +I+KA+ + A YHPDK ++P A F+ I EAYE LSD N+R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD----AEAKFREIAEAYETLSDANRR 65
Query: 74 LIYDIYGMEGLTSG 87
YD G TSG
Sbjct: 66 KEYDTLGHSAFTSG 79
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDEN 71
+ Y +L +S ASDE+++KAYR+ A +HPDK AP ATE F+ I AY +LS+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG----ATEAFKAIGTAYAVLSNPE 63
Query: 72 KRLIYDIYGMEGLTSG 87
KR YD +G G +SG
Sbjct: 64 KRKQYDQFG-SGPSSG 78
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68
++ Y +L +S A + EIRKAY++ A YHPD+ Q E F+ I EAYE+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEA---KFKEIKEAYEVLT 57
Query: 69 DENKRLIYDIYGMEGLTSG 87
D KR YD YG G
Sbjct: 58 DSQKRAAYDQYGHAAFEQG 76
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68
++ Y +L +S A + EIRKAY++ A YHPD+ Q E F+ I EAYE+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEA---KFKEIKEAYEVLT 57
Query: 69 DENKRLIYDIYG 80
D KR YD YG
Sbjct: 58 DSQKRAAYDQYG 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L + AS E+I+KAYR+ A +HPDK P KE A + F+ + EAYE+LSD KR
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDK--NPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 74 LIYDIYGME 82
+YD G +
Sbjct: 70 SLYDRAGCD 78
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68
++ Y +L +S A + EIRKAY++ A YHPD+ Q E F+ I EAYE+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEA---KFKEIKEAYEVLT 57
Query: 69 DENKRLIYDIYG 80
D KR YD YG
Sbjct: 58 DSQKRAAYDQYG 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDEN 71
+ Y +L + AS +EI+KAY Q A+ YHPD + A E F ++ EAYE+LSDE
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK---AKEKFSQLAEAYEVLSDEV 64
Query: 72 KRLIYDIYGMEGLTSG 87
KR YD YG G +SG
Sbjct: 65 KRKQYDAYG-SGPSSG 79
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 13 LYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENK 72
LY +L L A+ ++I+K+YR+ A YHPDK P E A + F+ I A+ IL+D K
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDK--NPDNPE-AADKFKEINNAHAILTDATK 75
Query: 73 RLIYDIYGMEGLTSGLELG 91
R IYD YG GL + G
Sbjct: 76 RNIYDKYGSLGLYVAEQFG 94
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L +S AS +I+KAY++ A+ +HPDK + P A + F +I +AYEILS+E KR
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG----AEDRFIQISKAYEILSNEEKR 75
Query: 74 LIYDIYGMEGLTSG 87
YD YG G +SG
Sbjct: 76 TNYDHYG-SGPSSG 88
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 14 YALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
Y +L + P A+ EE++KAYR+ A YHPDK P+ E F++I +AYE+LSD KR
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDK--NPN----EGEKFKQISQAYEVLSDAKKR 62
Query: 74 LIYDIYG 80
+YD G
Sbjct: 63 ELYDKGG 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYE 65
+G ++ Y+LL +S AS EIR+A+++ A HPDK P+ A +F +I AYE
Sbjct: 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDK--NPNNPN-AHGDFLKINRAYE 72
Query: 66 ILSDENKRLIYDIYGMEGL 84
+L DE+ R YD YG +GL
Sbjct: 73 VLKDEDLRKKYDKYGEKGL 91
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKY-QAPHMKEIATENFQRICEAYEILSD 69
+ Y+LL +S AS EIR+A+++ A HPDK P+ A +F +I AYE+L D
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN----AHGDFLKINRAYEVLKD 57
Query: 70 ENKRLIYDIYGMEGL 84
E+ R YD YG +GL
Sbjct: 58 EDLRKKYDKYGEKGL 72
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEI 66
G ++ YA++ + P + I+ AYR+ A+ YHPD + P A F+ + EA+E+
Sbjct: 1 GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEV 56
Query: 67 LSDENKRLIYD 77
LSDE +R YD
Sbjct: 57 LSDEQRRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70
++ YA+L + P + I+ AYR+ A+ YHPD + + A F+ + EA+E+L DE
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK----ENDAEAKFKDLAEAWEVLKDE 83
Query: 71 NKRLIYD 77
+R YD
Sbjct: 84 QRRAEYD 90
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 14 YALLHLSPEASDEE-IRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENK 72
Y +L ++ E D++ + KAYR A+ +HPD+ + K +A E F+ I AYE L D+
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 73 RLIYDIY 79
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70
R+ Y +L + A +EI KAYR+ A +HPD +Q K+ A + F I A E+LSD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 71 NKRLIYD 77
R +D
Sbjct: 442 EXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70
R+ Y +L + A +EI KAYR+ A +HPD +Q K+ A + F I A E+LSD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 71 NKRLIYD 77
R +D
Sbjct: 442 EMRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 13 LYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENK 72
LY LL + A+ +I+ AY + +YHPD+ A E F RI +AY +L
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG---SAEAAERFTRISQAYVVLGSATL 75
Query: 73 RLIYD 77
R YD
Sbjct: 76 RRKYD 80
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA---PHMKEIATENFQRICEAYEIL 67
++ Y++L P A+ ++++ Y++ +YHPDK A E + F I +A++IL
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 68 SDENKRLIYDI 78
+E + YD+
Sbjct: 76 GNEETKKKYDL 86
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAP 47
+++ + +L + P AS +E+ KAYR+ A + HPDK AP
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA---PHMKEIATENFQRICEAYE 65
P ++ Y++L P A+ ++++ Y++ +YHPDK E + F I +A++
Sbjct: 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 66 ILSDENKRLIYDI 78
IL +E + YD+
Sbjct: 68 ILGNEETKREYDL 80
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKY-QAPHMKEIATENFQRICEAYEILSDE 70
+ Y LL +S E+I ++ A HPDK+ + P A E FQ++ +A EIL++E
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPK----AVETFQKLQKAKEILTNE 76
Query: 71 NKRLIYDIY 79
R YD +
Sbjct: 77 ESRARYDHW 85
>pdb|1ZKJ|A Chain A, Structural Basis For The Extended Substrate Spectrum Of
Cmy- 10, A Plasmid-encoded Class C Beta-lactamase
Length = 359
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 24 SDEEIRKAYRQWAQVYHPDKYQ 45
S E++R YRQWA VY P ++
Sbjct: 128 SSEKMRAYYRQWAPVYSPGSHR 149
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 23 ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIY 76
+ E+++K YR+ V HPDK ++ A F + +A+ ++ ++ +Y
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 16 LLHLSPEASDEEIRKA-----YRQWAQVYHPDKYQAPHMKEIATE 55
++HL+ E+ D ++ KA WA+ P K AP + EIA E
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 16 LLHLSPEASDEEIRKA-----YRQWAQVYHPDKYQAPHMKEIATE 55
++HL+ ++ D ++ KA WA+ P K AP + EIA E
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADE 48
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQ-RICEAYEIL 67
P +E L+HL +AS+E+I + ++++ YQ P +K + R E+L
Sbjct: 126 PPKEYVCLMHLHRDASEEDILRVFKEFTGRI----YQRPPLKAAVKRRLRIRKIHELELL 181
Query: 68 SDENKRLIYDIYGMEG 83
+ K +++ + G
Sbjct: 182 DKDGKDVLFRVKCQSG 197
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 23 ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIY 76
+ E+++K YR+ V HPDK ++ A F + +A+ ++ ++ +Y
Sbjct: 61 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 16 LLHLSPEASDEEIRKA-----YRQWAQVYHPDKYQAPHMKEIATE 55
++HL+ ++ D ++ KA WA+ P K AP ++EIA E
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADE 48
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 13 LYALLHLSPEASDEEIRKAYRQWAQVY--HPDKYQAPHMKEIATENFQRICEAYEILSDE 70
LYA+LHL+ E K++RQW HP++ P ++ Q I A + E
Sbjct: 75 LYAVLHLTGYDLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAE 134
Query: 71 NK 72
K
Sbjct: 135 RK 136
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 26 EEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73
E+++K YR+ V HPDK ++ A F + +A+ ++ ++
Sbjct: 132 EQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 31 AYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
+ + + V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 17 VFGEGSAVHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 71
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 22 EASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENF 57
E +D E+ KA+ + A +Y D + A H +TE
Sbjct: 124 EKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGI 159
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With
Somatomedin B Domain Of Vitronectin
Length = 379
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen
Activator Inhibitor-1(Pai-1)
Length = 379
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1
In A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1
In A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1
In A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1
In A Metastable Active Conformation
Length = 379
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With
The Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With
The Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With
The Inhibitor Az3976
Length = 383
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 5 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 52
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator
Inhibitor Type-1
Length = 379
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 38 VYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLEL 90
V+HP Y A + FQ++ +A +++ +++ YG+ + + L+L
Sbjct: 1 VHHPPSYVAHLASDFGVRVFQQVAQA-----SKDRNVVFSPYGVASVLAMLQL 48
>pdb|2VH2|A Chain A, Crystal Structure Of Cell Divison Protein Ftsq From
Yersinia Enterecolitica
pdb|2VH2|B Chain B, Crystal Structure Of Cell Divison Protein Ftsq From
Yersinia Enterecolitica
Length = 255
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 21 PEASDEEIRKAYRQWAQVYHPDKYQ-------APHMKEIATEN--------------FQR 59
PE S++++ + YR +V +KYQ A H ++A +N QR
Sbjct: 133 PEGSEQDVLEGYRAINKVLAANKYQLKMVAMSARHSWQLALDNDVRLELGRDDRMGRLQR 192
Query: 60 ICEAYEILSDE-NKRLIY 76
E Y +L + +KR+ Y
Sbjct: 193 FIELYPMLQQQPDKRVSY 210
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus
With Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v
Tthl1 In Complex With 80nt 23s Rna From Thermus
Thermophilus
Length = 229
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 85 TSGL 88
GL
Sbjct: 66 PHGL 69
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
Length = 229
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 85 TSGL 88
GL
Sbjct: 66 PHGL 69
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5
A Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 85 TSGL 88
GL
Sbjct: 66 PHGL 69
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a
Tthl1 In Complex With 80nt 23s Rna From Thermus
Thermophilus
Length = 228
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 85 TSGL 88
GL
Sbjct: 65 PHGL 68
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 85 TSGL 88
GL
Sbjct: 66 PHGL 69
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules
Are In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 85 TSGL 88
GL
Sbjct: 65 PHGL 68
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 85 TSGL 88
GL
Sbjct: 66 PHGL 69
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|C Chain C, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|E Chain E, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|G Chain G, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
Length = 228
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 85 TSGL 88
GL
Sbjct: 65 PHGL 68
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 28 IRKAYRQWAQVYHPDKYQ----APHMKEIATENFQRICEAYE 65
+RK+Y++ + HPDK Q + + K +A + F+ + EA++
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1
Resolution
Length = 228
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 85 TSGL 88
GL
Sbjct: 65 PHGL 68
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By
Cysteine
Length = 228
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 85 TSGL 88
GL
Sbjct: 65 PHGL 68
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 30 KAYRQWAQVYHPDKY----QAPHM-KEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84
K YR + P+K +A H+ KE+AT F E + L + +R ++ G L
Sbjct: 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60
Query: 85 TSGL 88
GL
Sbjct: 61 PHGL 64
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 28 IRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIY 76
+RK YRQ +HPD M + +E + +AY L D +R Y
Sbjct: 27 LRKEYRQLQAQHHPD------MAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 28 IRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIY 76
+RK YRQ +HPD M + +E + +AY L D +R Y
Sbjct: 35 LRKEYRQLQAQHHPD------MAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,138,110
Number of Sequences: 62578
Number of extensions: 144292
Number of successful extensions: 478
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 65
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)