Query 042966
Match_columns 143
No_of_seqs 161 out of 1578
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0718 Molecular chaperone (D 100.0 9.2E-33 2E-37 226.7 13.5 134 7-140 5-139 (546)
2 COG0484 DnaJ DnaJ-class molecu 99.9 3E-27 6.4E-32 191.9 10.2 127 9-138 2-132 (371)
3 KOG0713 Molecular chaperone (D 99.9 3.5E-25 7.7E-30 176.5 8.1 76 9-87 14-89 (336)
4 KOG0712 Molecular chaperone (D 99.9 2.3E-23 5E-28 167.3 7.2 116 9-138 2-117 (337)
5 PRK14288 chaperone protein Dna 99.9 2.2E-22 4.7E-27 165.0 9.7 73 10-85 2-74 (369)
6 PRK14296 chaperone protein Dna 99.9 1.9E-22 4.1E-27 165.5 7.6 72 10-85 3-74 (372)
7 PRK14286 chaperone protein Dna 99.9 8.3E-22 1.8E-26 161.7 9.8 73 10-85 3-75 (372)
8 PRK14287 chaperone protein Dna 99.9 1E-21 2.2E-26 161.1 10.1 124 10-138 3-128 (371)
9 PTZ00037 DnaJ_C chaperone prot 99.9 8E-22 1.7E-26 163.9 9.2 120 4-138 21-140 (421)
10 PRK14276 chaperone protein Dna 99.9 1.9E-21 4.2E-26 160.0 9.8 72 10-85 3-74 (380)
11 PRK14279 chaperone protein Dna 99.9 1.4E-21 3.1E-26 161.3 8.0 71 9-82 7-77 (392)
12 PRK14280 chaperone protein Dna 99.8 4.1E-21 9E-26 157.8 9.9 124 10-138 3-133 (376)
13 PRK14298 chaperone protein Dna 99.8 3E-21 6.5E-26 158.7 9.0 123 10-138 4-131 (377)
14 PRK14299 chaperone protein Dna 99.8 6.5E-21 1.4E-25 151.9 10.3 70 10-83 3-72 (291)
15 PRK14294 chaperone protein Dna 99.8 5.4E-21 1.2E-25 156.6 9.8 73 10-85 3-75 (366)
16 PRK14285 chaperone protein Dna 99.8 5.9E-21 1.3E-25 156.4 9.8 124 11-138 3-136 (365)
17 PRK14291 chaperone protein Dna 99.8 8.3E-21 1.8E-25 156.3 9.9 72 10-85 2-73 (382)
18 PRK14282 chaperone protein Dna 99.8 4.7E-21 1E-25 157.1 8.2 73 10-84 3-75 (369)
19 PRK14297 chaperone protein Dna 99.8 8.6E-21 1.9E-25 156.1 9.6 73 10-85 3-75 (380)
20 PRK14278 chaperone protein Dna 99.8 9.1E-21 2E-25 155.9 9.7 124 11-138 3-129 (378)
21 KOG0717 Molecular chaperone (D 99.8 5.3E-21 1.1E-25 157.4 8.1 78 6-85 3-80 (508)
22 PRK14283 chaperone protein Dna 99.8 4.7E-21 1E-25 157.6 7.8 72 10-85 4-75 (378)
23 PRK14301 chaperone protein Dna 99.8 1.5E-20 3.2E-25 154.4 9.8 73 10-85 3-75 (373)
24 PF00226 DnaJ: DnaJ domain; I 99.8 1.2E-20 2.7E-25 118.2 6.6 64 12-77 1-64 (64)
25 PRK14277 chaperone protein Dna 99.8 1.4E-20 3E-25 155.2 8.4 73 10-85 4-76 (386)
26 PRK14281 chaperone protein Dna 99.8 4E-20 8.8E-25 152.9 10.3 72 11-85 3-74 (397)
27 PRK14295 chaperone protein Dna 99.8 2.9E-20 6.2E-25 153.4 7.8 73 10-85 8-84 (389)
28 TIGR02349 DnaJ_bact chaperone 99.8 5.4E-20 1.2E-24 150.0 9.4 123 12-138 1-133 (354)
29 PRK14290 chaperone protein Dna 99.8 7E-20 1.5E-24 150.0 9.8 73 11-85 3-75 (365)
30 PRK14284 chaperone protein Dna 99.8 3.8E-20 8.2E-25 152.8 8.1 71 11-84 1-71 (391)
31 PRK10767 chaperone protein Dna 99.8 4.2E-20 9E-25 151.6 8.3 73 10-85 3-75 (371)
32 PRK14293 chaperone protein Dna 99.8 1.3E-19 2.8E-24 148.9 9.9 71 11-85 3-73 (374)
33 PRK14292 chaperone protein Dna 99.8 1.3E-19 2.8E-24 148.7 9.6 124 11-138 2-129 (371)
34 KOG0691 Molecular chaperone (D 99.8 1.3E-19 2.7E-24 144.1 8.3 74 10-86 4-77 (296)
35 PRK14289 chaperone protein Dna 99.8 1.2E-19 2.7E-24 149.5 8.4 73 10-85 4-76 (386)
36 PTZ00341 Ring-infected erythro 99.8 2E-19 4.3E-24 158.9 10.0 76 7-86 569-644 (1136)
37 KOG0716 Molecular chaperone (D 99.8 7.1E-20 1.5E-24 142.4 5.7 73 10-85 30-102 (279)
38 PRK10266 curved DNA-binding pr 99.8 4E-19 8.6E-24 142.5 10.2 68 11-82 4-71 (306)
39 KOG0715 Molecular chaperone (D 99.8 2E-19 4.2E-24 143.2 8.3 69 11-83 43-111 (288)
40 PRK14300 chaperone protein Dna 99.8 1.2E-19 2.5E-24 149.0 7.2 71 11-85 3-73 (372)
41 KOG0719 Molecular chaperone (D 99.8 4E-19 8.6E-24 135.7 8.3 76 7-83 10-85 (264)
42 smart00271 DnaJ DnaJ molecular 99.8 2.3E-18 5.1E-23 106.3 6.6 59 11-71 1-59 (60)
43 PRK01356 hscB co-chaperone Hsc 99.7 2.3E-17 5.1E-22 121.9 11.4 71 11-81 2-74 (166)
44 cd06257 DnaJ DnaJ domain or J- 99.7 9.1E-18 2E-22 101.8 6.6 55 12-69 1-55 (55)
45 PRK05014 hscB co-chaperone Hsc 99.7 2.1E-17 4.5E-22 122.7 7.7 71 11-81 1-75 (171)
46 TIGR03835 termin_org_DnaJ term 99.7 1.9E-17 4.1E-22 143.7 8.3 71 11-85 2-72 (871)
47 PRK00294 hscB co-chaperone Hsc 99.7 5.5E-17 1.2E-21 120.6 8.7 74 8-81 1-78 (173)
48 PRK03578 hscB co-chaperone Hsc 99.7 5.4E-17 1.2E-21 121.0 8.1 71 10-80 5-79 (176)
49 KOG0721 Molecular chaperone (D 99.7 2.9E-17 6.2E-22 124.4 6.6 78 8-88 96-173 (230)
50 PHA03102 Small T antigen; Revi 99.7 4E-17 8.6E-22 118.9 6.8 70 10-86 4-75 (153)
51 COG2214 CbpA DnaJ-class molecu 99.7 7.7E-17 1.7E-21 120.4 7.2 70 8-79 3-72 (237)
52 KOG0624 dsRNA-activated protei 99.6 3.9E-16 8.5E-21 126.1 5.8 75 6-80 389-463 (504)
53 KOG0722 Molecular chaperone (D 99.6 7.3E-15 1.6E-19 113.9 6.7 87 10-114 32-118 (329)
54 KOG0720 Molecular chaperone (D 99.6 4.8E-15 1E-19 122.4 5.7 71 7-81 231-301 (490)
55 PRK01773 hscB co-chaperone Hsc 99.5 2.4E-14 5.3E-19 106.4 7.9 71 11-81 2-76 (173)
56 KOG0714 Molecular chaperone (D 99.5 2.6E-14 5.6E-19 111.3 5.0 75 10-86 2-76 (306)
57 PRK09430 djlA Dna-J like membr 99.5 8.7E-14 1.9E-18 109.9 6.4 63 7-69 196-262 (267)
58 KOG0550 Molecular chaperone (D 99.4 9.2E-14 2E-18 114.1 5.4 93 7-104 369-461 (486)
59 PTZ00100 DnaJ chaperone protei 99.4 1.7E-13 3.7E-18 95.4 5.7 56 6-68 60-115 (116)
60 COG5407 SEC63 Preprotein trans 99.4 6.1E-13 1.3E-17 110.2 6.2 77 10-86 97-175 (610)
61 PHA02624 large T antigen; Prov 99.4 4.3E-13 9.4E-18 115.2 5.0 70 1-77 1-72 (647)
62 TIGR00714 hscB Fe-S protein as 99.4 3E-12 6.6E-17 93.9 8.2 60 22-81 2-63 (157)
63 KOG1150 Predicted molecular ch 99.2 1.5E-11 3.3E-16 92.6 5.4 65 9-75 51-115 (250)
64 COG5269 ZUO1 Ribosome-associat 99.2 2.1E-11 4.5E-16 95.7 6.3 104 3-111 35-141 (379)
65 KOG0568 Molecular chaperone (D 98.9 2E-08 4.4E-13 77.6 9.0 105 10-118 46-167 (342)
66 KOG3192 Mitochondrial J-type c 98.5 2E-07 4.3E-12 67.8 4.6 73 6-78 3-79 (168)
67 KOG0723 Molecular chaperone (D 98.5 3.4E-07 7.4E-12 62.5 5.2 54 10-70 55-108 (112)
68 KOG1789 Endocytosis protein RM 98.5 2.6E-07 5.5E-12 83.7 5.6 60 3-68 1273-1336(2235)
69 COG1076 DjlA DnaJ-domain-conta 97.4 0.00015 3.2E-09 53.9 3.8 70 12-81 2-75 (174)
70 KOG0431 Auxilin-like protein a 97.2 0.00057 1.2E-08 57.9 4.8 48 20-67 397-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 96.9 0.0013 2.7E-08 48.9 4.2 57 11-67 113-173 (174)
72 PF03656 Pam16: Pam16; InterP 95.4 0.055 1.2E-06 38.4 5.7 52 12-70 59-110 (127)
73 PF13446 RPT: A repeated domai 90.9 0.87 1.9E-05 27.8 5.0 28 10-37 4-31 (62)
74 PF14687 DUF4460: Domain of un 90.0 1.1 2.3E-05 31.1 5.3 51 21-71 4-55 (112)
75 KOG0724 Zuotin and related mol 84.1 1.4 3E-05 35.6 3.8 56 23-78 4-60 (335)
76 COG5552 Uncharacterized conser 83.1 6.9 0.00015 25.3 5.8 38 10-47 2-39 (88)
77 PF10041 DUF2277: Uncharacteri 83.0 9.7 0.00021 24.6 6.5 60 10-69 2-61 (78)
78 PF11833 DUF3353: Protein of u 77.8 4.4 9.4E-05 30.7 4.3 40 20-70 1-40 (194)
79 PF07709 SRR: Seven Residue Re 57.2 9.7 0.00021 16.3 1.5 13 56-68 2-14 (14)
80 KOG3442 Uncharacterized conser 53.5 60 0.0013 23.0 5.6 34 13-46 61-94 (132)
81 KOG0906 Phosphatidylinositol 3 37.4 53 0.0011 29.8 4.1 59 10-68 623-693 (843)
82 PF12434 Malate_DH: Malate deh 34.9 52 0.0011 17.0 2.2 17 25-41 10-26 (28)
83 PF08447 PAS_3: PAS fold; Int 28.5 11 0.00025 23.3 -1.1 31 10-44 5-36 (91)
84 PF04949 Transcrip_act: Transc 26.6 98 0.0021 22.7 3.4 26 51-76 62-87 (159)
85 KOG0855 Alkyl hydroperoxide re 26.0 38 0.00082 25.5 1.2 20 63-82 148-167 (211)
86 cd01780 PLC_epsilon_RA Ubiquit 25.4 75 0.0016 21.3 2.4 34 11-44 11-44 (93)
87 PF00076 RRM_1: RNA recognitio 24.8 57 0.0012 18.8 1.7 23 16-38 3-25 (70)
88 PRK15321 putative type III sec 21.5 1.7E+02 0.0038 19.9 3.6 33 15-47 25-57 (120)
89 PF07739 TipAS: TipAS antibiot 20.0 2.7E+02 0.0058 18.2 4.6 48 18-77 51-99 (118)
No 1
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-33 Score=226.69 Aligned_cols=134 Identities=43% Similarity=0.719 Sum_probs=130.6
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc-
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT- 85 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~- 85 (143)
.+++.+||.+|+||++||.++|++|||++|+.|||||+.+|..+..|++.|+.|++||+||+||.+|++||.+|++|+.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 6678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCCCC
Q 042966 86 SGLELGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEGDG 140 (143)
Q Consensus 86 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 140 (143)
.||+.+....+++|++++++++.+++++.+++++++++|++.+++++..+|..+|
T Consensus 85 ~gwEl~~r~~tpeEIreE~Erl~r~~de~~l~qr~~P~g~i~i~v~~t~lF~~~d 139 (546)
T KOG0718|consen 85 EGWELGFRGKTPEEIREEYERLQRERDERRLQQRVQPTGEITINVNATPLFARND 139 (546)
T ss_pred cCceeecCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecchhhhccCc
Confidence 9999999999999999999999999999999999999999999999999999887
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3e-27 Score=191.94 Aligned_cols=127 Identities=31% Similarity=0.463 Sum_probs=91.6
Q ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCC
Q 042966 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGL 88 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~ 88 (143)
..+|||+||||+++||.+|||+|||+||++||||+++.. ++|+++|++|++||+|||||++|++||++|..+...+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~---~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg 78 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD---KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGG 78 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCC
Confidence 468999999999999999999999999999999999942 45999999999999999999999999999998876322
Q ss_pred CCC--CC-CC-CHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 89 ELG--PK-LN-KVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 89 ~~~--~~-~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
..+ .. +. +..+||..++--......+.........-.+.+.++|..++.|
T Consensus 79 ~gg~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G 132 (371)
T COG0484 79 FGGFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFG 132 (371)
T ss_pred cCCCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccC
Confidence 111 11 11 5788888887310000000000111222245667777777765
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.5e-25 Score=176.47 Aligned_cols=76 Identities=50% Similarity=0.781 Sum_probs=71.3
Q ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCC
Q 042966 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 87 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~ 87 (143)
..+|||+||||+++|+..+||+|||+||+++|||||++. +.|.+.|+.|+.||+||+||.+|..||.+|++++..+
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd---p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD---PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 468999999999999999999999999999999999975 5599999999999999999999999999999998743
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-23 Score=167.32 Aligned_cols=116 Identities=40% Similarity=0.561 Sum_probs=87.6
Q ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCC
Q 042966 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGL 88 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~ 88 (143)
.+..||+||||+++||.+|||+|||+|+++|||||+++ +.++|++|..||+|||||++|..||++|+.++..+.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 46789999999999999999999999999999999987 579999999999999999999999999999987554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 89 ELGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 89 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
..+.... ...+|. +--...+.. .-.+.-...+++.|.+++-+
T Consensus 76 ~~~g~~~-f~~~F~-~g~~~~~~~------~rg~~~~~~~~~~Le~~y~G 117 (337)
T KOG0712|consen 76 GGGGFGG-FSQFFG-FGGNGGRGR------QRGKDVVHQLKVTLEELYMG 117 (337)
T ss_pred CCCCCcc-HHHhcc-CCCcCcccc------ccCCCceEEEEEEHHHhhcC
Confidence 4433322 223322 000000000 01455566788888888766
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=2.2e-22 Score=165.02 Aligned_cols=73 Identities=42% Similarity=0.742 Sum_probs=66.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+||++||||+++.. +.|.++|++|++||+||+||.+|+.||++|..+..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~---~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD---KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 47999999999999999999999999999999999742 34789999999999999999999999999987654
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.9e-22 Score=165.49 Aligned_cols=72 Identities=39% Similarity=0.700 Sum_probs=66.3
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+||++||||+++++. |.++|++|++||+||+||.+|+.||.+|..+..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~----a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD----AHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 479999999999999999999999999999999997543 789999999999999999999999999886543
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8.3e-22 Score=161.71 Aligned_cols=73 Identities=45% Similarity=0.752 Sum_probs=66.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||++|..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN---KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 47999999999999999999999999999999998743 34789999999999999999999999999987654
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1e-21 Score=161.13 Aligned_cols=124 Identities=26% Similarity=0.412 Sum_probs=85.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCC-
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGL- 88 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~- 88 (143)
..|||+||||+++||.++||+|||+|+++||||+++.+ .+.++|+.|++||++|+||.+|+.||++|..+...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~ 78 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP----DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFG 78 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccC
Confidence 46999999999999999999999999999999998753 3788999999999999999999999999987654221
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 89 E-LGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 89 ~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
. ....+....+++..|+--....... ........-.+.+.++|..++.|
T Consensus 79 ~~~~~~f~~~~d~f~~~fgg~~~~~~~-~~~~~g~d~~~~l~vslee~~~G 128 (371)
T PRK14287 79 GGGAGDFGGFSDIFDMFFGGGGGRRNP-NAPRQGADLQYTMTLEFKEAVFG 128 (371)
T ss_pred CCCCccccchHHHHHhhhccccCCCCC-CCCCCCCCEEEEEEEEHHHhcCC
Confidence 0 0111223456666654210000000 00011223345667788888765
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.86 E-value=8e-22 Score=163.92 Aligned_cols=120 Identities=35% Similarity=0.476 Sum_probs=87.8
Q ss_pred CCCCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCc
Q 042966 4 AKDGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEG 83 (143)
Q Consensus 4 ~~~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~ 83 (143)
.+......|||+||||+++||.++||+|||+||++||||++++ .++|++|++||+||+||.+|+.||.+|..+
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-------PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-------HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 4455567899999999999999999999999999999999853 378999999999999999999999999876
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 84 LTSGLELGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 84 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
...+.. ..++.+++..|+--.... . .......-.+.+.++|..++.|
T Consensus 94 ~~~~~~----~~d~~d~f~~~Fggg~~~--~--~~~rg~di~~~l~vtLee~~~G 140 (421)
T PTZ00037 94 LEGGEQ----PADASDLFDLIFGGGRKP--G--GKKRGEDIVSHLKVTLEQIYNG 140 (421)
T ss_pred cccCCC----CcchhhhHHHhhcccccc--c--cccCCCCEEEEeeeeHHHHhCC
Confidence 543211 123556666654311000 0 0111223345677788888876
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.9e-21 Score=159.96 Aligned_cols=72 Identities=47% Similarity=0.779 Sum_probs=66.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++++. +.++|+.|++||+||+||.+|+.||++|..+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG----AEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcC----HHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 479999999999999999999999999999999997643 788999999999999999999999999987654
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=161.32 Aligned_cols=71 Identities=39% Similarity=0.551 Sum_probs=65.2
Q ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCC
Q 042966 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGME 82 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~ 82 (143)
...|||+||||+++||.++||+|||+|+++||||++++. +.|.++|++|++||+||+||.+|+.||++|..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD---PAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 458999999999999999999999999999999999743 34789999999999999999999999999753
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=4.1e-21 Score=157.79 Aligned_cols=124 Identities=31% Similarity=0.494 Sum_probs=87.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCCC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLE 89 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~~ 89 (143)
..|||+||||+++||.++||+|||+|+++||||+++++. +.++|++|++||+||+||.+|+.||.+|..+...+..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~ 78 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG----ADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFG 78 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc----HHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcC
Confidence 369999999999999999999999999999999997644 7899999999999999999999999999876543210
Q ss_pred C---C-CCC---CCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 90 L---G-PKL---NKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 90 ~---~-~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
. + ..+ ...++++..|+--....... ........-.+.+.++|.+++.|
T Consensus 79 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~-~~~~kg~di~~~l~vtLee~~~G 133 (376)
T PRK14280 79 GGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDP-NAPRQGADLQYTMTLTFEEAVFG 133 (376)
T ss_pred CCCCCCCCccccccchhhHHHHhCCccccCcc-cccccccCEEEEEEEEHHHHhCC
Confidence 0 0 001 13456666654210000000 00011223356777889988876
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3e-21 Score=158.69 Aligned_cols=123 Identities=33% Similarity=0.475 Sum_probs=85.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCCC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLE 89 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~~ 89 (143)
..|||+||||+++||.++||+|||+|+++||||+++++ .+.++|+.|++||++|+||.+|+.||++|..+...+..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~ 79 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP----DAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYS 79 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh----hHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccC
Confidence 46999999999999999999999999999999998753 37899999999999999999999999999876542210
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 90 -----LGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 90 -----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
.+..+....+++..|+--.... .. ........-.+.+.++|.+++.|
T Consensus 80 ~~~~~~~~~~~~~~d~f~~~Fgg~~~~-~~-~~~~~g~di~~~l~vslee~~~G 131 (377)
T PRK14298 80 AEDIFRGADFGGFGDIFEMFFGGGGRR-GR-MGPRRGSDLRYDLYITLEEAAFG 131 (377)
T ss_pred cccccccCCcCcchhhhHhhhcCCCcc-CC-CCCCCCCCEEEEEEEEHHHhhCC
Confidence 0111122345666554210000 00 00011223345677788888766
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=6.5e-21 Score=151.90 Aligned_cols=70 Identities=46% Similarity=0.812 Sum_probs=65.1
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEG 83 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~ 83 (143)
..|||+||||+++||.++||+|||+|+++||||+++++. +.++|+.|++||++|+||.+|+.||.+|..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG----AEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChh----HHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 479999999999999999999999999999999997543 7889999999999999999999999998764
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.4e-21 Score=156.62 Aligned_cols=73 Identities=49% Similarity=0.824 Sum_probs=67.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++.. +.+.+.|+.|++||+||+||.+|+.||++|..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD---KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999999743 34788999999999999999999999999987654
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.9e-21 Score=156.38 Aligned_cols=124 Identities=31% Similarity=0.437 Sum_probs=86.4
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCCC-
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLE- 89 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~~- 89 (143)
.|||+||||+++||.++||+|||+|+++||||+++.. +.+.++|++|++||++|+||.+|..||.+|..+...+..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~ 79 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN---KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGF 79 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCc
Confidence 6999999999999999999999999999999998753 347889999999999999999999999998876542211
Q ss_pred ----CCC-----CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 90 ----LGP-----KLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 90 ----~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
.+. .+.+..+++..|+--....... ........-.+.+.++|.+++.|
T Consensus 80 ~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~-~~~~~g~di~~~l~vtlee~~~G 136 (365)
T PRK14285 80 EGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKN-RKHEKGQDLTYQIEISLEDAYLG 136 (365)
T ss_pred cccCCCccccccccccHHHHHHHhhcCCcCCCCC-cCCCCCCCEEEEEEEEHHHhhCC
Confidence 010 0123456666664210000000 00011223345677788888866
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=8.3e-21 Score=156.30 Aligned_cols=72 Identities=44% Similarity=0.810 Sum_probs=66.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++++. +.++|+.|++||+||+||.+|+.||.+|..++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 73 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE----AEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFS 73 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHhhhcccccc
Confidence 379999999999999999999999999999999998643 789999999999999999999999999887653
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=157.11 Aligned_cols=73 Identities=38% Similarity=0.725 Sum_probs=66.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
..|||+||||+++||.++||+|||+|+++||||+++... ..|.++|++|++||+||+||.+|+.||.+|..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENR--KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccch--hHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 479999999999999999999999999999999986431 3488999999999999999999999999987654
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=8.6e-21 Score=156.11 Aligned_cols=73 Identities=42% Similarity=0.734 Sum_probs=66.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++.. +.++++|+.|++||+||+||.+|+.||++|..+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN---KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 37999999999999999999999999999999999753 34789999999999999999999999999987653
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=9.1e-21 Score=155.86 Aligned_cols=124 Identities=31% Similarity=0.403 Sum_probs=85.0
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCC--
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGL-- 88 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~-- 88 (143)
.|||+||||+++||.++||+|||+|+++||||+++++ .+.++|+.|++||+||+||.+|..||.+|......+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~ 78 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE----EAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGG 78 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH----HHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCC
Confidence 6999999999999999999999999999999999753 4789999999999999999999999999875322110
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 89 -ELGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 89 -~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
..+..+....+++..|+--................-.+.+.++|.+++.|
T Consensus 79 ~g~~~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G 129 (378)
T PRK14278 79 GGFGGGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATG 129 (378)
T ss_pred CCCCcCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCC
Confidence 00111223456666664210000000000011223355677788888866
No 21
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.3e-21 Score=157.43 Aligned_cols=78 Identities=41% Similarity=0.555 Sum_probs=70.7
Q ss_pred CCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.+...++||+||||.++++..+||++||+||++||||++|... +++++.|+.|+.||+|||||..|++||......+.
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i--eeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI--EEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH--HHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 3456789999999999999999999999999999999987654 78999999999999999999999999998776554
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=157.57 Aligned_cols=72 Identities=43% Similarity=0.756 Sum_probs=66.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|+.||.+|..+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE----GAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----cHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 57999999999999999999999999999999998753 3889999999999999999999999999877653
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.5e-20 Score=154.41 Aligned_cols=73 Identities=42% Similarity=0.751 Sum_probs=66.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||++++. +.+.++|++|++||+||+||.+|+.||.+|..+..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN---PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC---hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 47999999999999999999999999999999999753 34788999999999999999999999999987654
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.83 E-value=1.2e-20 Score=118.23 Aligned_cols=64 Identities=55% Similarity=0.852 Sum_probs=60.4
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHh
Q 042966 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYD 77 (143)
Q Consensus 12 ~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD 77 (143)
|||+||||+++++.++|+++|+++++.+|||+++... ..+...|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~--~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE--AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH--HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh--hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999999999999999999999999987654 568999999999999999999999998
No 25
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.4e-20 Score=155.17 Aligned_cols=73 Identities=42% Similarity=0.734 Sum_probs=66.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||++++. ..++++|++|++||+||+||.+|+.||.+|..+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD---KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999999743 34788999999999999999999999999876653
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=4e-20 Score=152.89 Aligned_cols=72 Identities=44% Similarity=0.764 Sum_probs=66.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.|||+||||+++|+.++||+|||+|+++||||++++. ..+.++|+.|++||++|+||.+|+.||.+|..+..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN---KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 6999999999999999999999999999999999753 34789999999999999999999999999887654
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.9e-20 Score=153.44 Aligned_cols=73 Identities=42% Similarity=0.766 Sum_probs=66.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhh----hcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDI----YGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~----~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++.. ..+.++|+.|++||+||+||.+|+.||+ +|..+..
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD---AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 47999999999999999999999999999999998743 3478999999999999999999999998 8876553
No 28
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=5.4e-20 Score=150.04 Aligned_cols=123 Identities=30% Similarity=0.437 Sum_probs=86.0
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCCC--
Q 042966 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLE-- 89 (143)
Q Consensus 12 ~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~~-- 89 (143)
|||+||||+++||.++||+||++|+++||||+++.+ .+.++|++|++||++|+||.+|..||.+|..+...+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~ 76 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDK----EAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGG 76 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc----cHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCC
Confidence 799999999999999999999999999999999743 37889999999999999999999999998876542111
Q ss_pred C---CC----CCCCHHHHHHHHHHHHHH-HHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 90 L---GP----KLNKVEELKEELERLRQR-KEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 90 ~---~~----~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
. .. .+....+++..|.--..- .............-.+.+.++|.+++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G 133 (354)
T TIGR02349 77 GGGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFG 133 (354)
T ss_pred CCCcCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCC
Confidence 0 00 123345666665421000 0000000112233456777889988876
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=7e-20 Score=150.02 Aligned_cols=73 Identities=41% Similarity=0.660 Sum_probs=66.7
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.|||+||||+++||.++||+|||+|+++||||+++.. ...|.++|+.|++||++|+||.+|..||.+|..+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~ 75 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN--KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFG 75 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccc
Confidence 6999999999999999999999999999999998753 235889999999999999999999999999987653
No 30
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.8e-20 Score=152.80 Aligned_cols=71 Identities=48% Similarity=0.752 Sum_probs=65.3
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
.|||+||||+++||.++||+|||+|+++||||++++. ..+.++|+.|++||++|+||.+|+.||++|..+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD---AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 3899999999999999999999999999999999753 3478899999999999999999999999987654
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.2e-20 Score=151.59 Aligned_cols=73 Identities=47% Similarity=0.773 Sum_probs=66.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+|||+|+++||||+++.. ..+.+.|++|++||++|+||.+|+.||.+|..+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD---KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 47999999999999999999999999999999998743 33788999999999999999999999999887654
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.3e-19 Score=148.91 Aligned_cols=71 Identities=39% Similarity=0.770 Sum_probs=65.8
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.|||+||||++++|.++||+|||+|+++||||+++++. +.++|+.|++||+||+||.+|+.||.+|..+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG----AEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 69999999999999999999999999999999987543 788999999999999999999999999887654
No 33
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.3e-19 Score=148.66 Aligned_cols=124 Identities=31% Similarity=0.356 Sum_probs=84.7
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC---C
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS---G 87 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~---~ 87 (143)
.|||+||||+++||.++||+||++|+++||||+++++ .+.++|+.|++||++|+||.+|+.||.+|..+... +
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~----~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~ 77 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK----GAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGG 77 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh----hHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCC
Confidence 4899999999999999999999999999999999753 37899999999999999999999999998765311 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHhhcCCcccEEEeechhhhcCC
Q 042966 88 LELGPKLNKVEELKEELERLRQRKEQ-EKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 88 ~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
...+....++++++..|.--...... ..........-...+.++|.+++.|
T Consensus 78 ~~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G 129 (371)
T PRK14292 78 DPFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAG 129 (371)
T ss_pred cccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCC
Confidence 11111112456777666421000000 0000011223345666678888765
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=144.13 Aligned_cols=74 Identities=46% Similarity=0.720 Sum_probs=68.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
..|||+||||+..++..+|++||+.+++.|||||||++ +.|.+.|+.|.+||+||+||.+|++||.++..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d---P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD---PQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 68999999999999999999999999999999999965 339999999999999999999999999998877653
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.2e-19 Score=149.49 Aligned_cols=73 Identities=44% Similarity=0.722 Sum_probs=66.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..|||+||||+++||.++||+||++|+++||||+++.. +.+.++|+.|++||++|+||.+|+.||.+|..+..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD---KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 57999999999999999999999999999999999753 34889999999999999999999999999887653
No 36
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.80 E-value=2e-19 Score=158.92 Aligned_cols=76 Identities=30% Similarity=0.568 Sum_probs=69.2
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
.....+||+||||+++||..+||+|||+||++||||+++++. +..+|+.|++||+||+||.+|+.||.+|..+...
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~----A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE----GFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 345789999999999999999999999999999999998642 7789999999999999999999999999887654
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.1e-20 Score=142.39 Aligned_cols=73 Identities=48% Similarity=0.735 Sum_probs=67.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
..++|+||||+++++.++||++||+|++++|||++++. +++.++|+.|++||.||+||.+|..||.+|..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 67899999999999999999999999999999999873 34899999999999999999999999999876654
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.79 E-value=4e-19 Score=142.52 Aligned_cols=68 Identities=37% Similarity=0.665 Sum_probs=63.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCC
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGME 82 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~ 82 (143)
.|||+||||++++|.++||+|||+|+++||||+++.+ .+.++|++|++||++|+||.+|+.||.++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP----DAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----cHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 6999999999999999999999999999999998654 3889999999999999999999999998753
No 39
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-19 Score=143.21 Aligned_cols=69 Identities=46% Similarity=0.789 Sum_probs=65.6
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEG 83 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~ 83 (143)
.|||+||||+++|+..|||.||++|++++|||.+.++. +.++|++|.+||+||+|+.+|..||..+..+
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~----a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKE----ASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcc----hhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 39999999999999999999999999999999998764 9999999999999999999999999998876
No 40
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=149.04 Aligned_cols=71 Identities=38% Similarity=0.714 Sum_probs=65.4
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.|||+||||+++||.++||+||++++++||||+++++. +.++|++|++||++|+||.+|+.||.+|..+..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKD----AEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcC----HHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 69999999999999999999999999999999987533 788999999999999999999999999876654
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-19 Score=135.74 Aligned_cols=76 Identities=45% Similarity=0.650 Sum_probs=69.1
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEG 83 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~ 83 (143)
.....|+|+||||.++|+..+|++|||+|++.+|||+++ .+.+.++...|++|+.||.||+|.++|+.||..|.-.
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 445679999999999999999999999999999999997 5556789999999999999999999999999876544
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.76 E-value=2.3e-18 Score=106.29 Aligned_cols=59 Identities=49% Similarity=0.749 Sum_probs=54.3
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchh
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDEN 71 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~ 71 (143)
+|||+||||+++++.++||++|+++++.+|||+++.. .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999999853 3568899999999999999985
No 43
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.74 E-value=2.3e-17 Score=121.89 Aligned_cols=71 Identities=28% Similarity=0.321 Sum_probs=63.1
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 11 RELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 11 ~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.|||+||||+++ ++..+|+++|+++++++|||+..+...+..+...+..|++||+||+||.+|+.|+....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999997 78999999999999999999987655555667789999999999999999999987654
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.73 E-value=9.1e-18 Score=101.83 Aligned_cols=55 Identities=55% Similarity=0.860 Sum_probs=51.3
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 042966 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSD 69 (143)
Q Consensus 12 ~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~d 69 (143)
|||+||||+++++.++|+++|+++++.+|||+++.. ..+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~---~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD---PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999863 4588999999999999986
No 45
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.72 E-value=2.1e-17 Score=122.73 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=61.2
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 11 RELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAPH--MKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 11 ~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.|||+||||+++ ++..+|+++|+++++.+|||+..+.. .+..+...|..|++||+||+||.+|+.|+....
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 68899999999999999999976432 234577899999999999999999999986543
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.71 E-value=1.9e-17 Score=143.73 Aligned_cols=71 Identities=42% Similarity=0.766 Sum_probs=65.6
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.|||+||||+++|+..+||++||+|++++|||+++++ .+..+|+.|++||++|+||.+|+.||.+|..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP----DAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 6999999999999999999999999999999998763 3678999999999999999999999999877654
No 47
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=5.5e-17 Score=120.59 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=63.9
Q ss_pred CccccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 8 PPNRELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAPH--MKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
+.+.|||++|||+++ ++..+|+++|+++++++|||+..+.. .+..+...+..|++||+||+||.+|+.|+....
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 357899999999997 67899999999999999999986432 245578889999999999999999999987544
No 48
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=5.4e-17 Score=120.96 Aligned_cols=71 Identities=28% Similarity=0.410 Sum_probs=61.0
Q ss_pred cccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhc
Q 042966 10 NRELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAP--HMKEIATENFQRICEAYEILSDENKRLIYDIYG 80 (143)
Q Consensus 10 ~~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~ 80 (143)
..|||+||||+++ ++..+|+++|+++++.+|||+.+.. ..+..+.+.+..||+||.||+||.+|+.|....
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 4799999999995 6899999999999999999998642 223446777899999999999999999998643
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.9e-17 Score=124.36 Aligned_cols=78 Identities=36% Similarity=0.560 Sum_probs=69.1
Q ss_pred CccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCC
Q 042966 8 PPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 87 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~ 87 (143)
...-|+|+||||++++|..|||+|||+|++++||||++.+ ...++.|..|.+||+.|+|+..|..|..+|.....++
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~---~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~ 172 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE---EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQA 172 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc---chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccc
Confidence 3467999999999999999999999999999999999875 3468889999999999999999999999987665544
Q ss_pred C
Q 042966 88 L 88 (143)
Q Consensus 88 ~ 88 (143)
.
T Consensus 173 ~ 173 (230)
T KOG0721|consen 173 T 173 (230)
T ss_pred h
Confidence 3
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.70 E-value=4e-17 Score=118.89 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=63.3
Q ss_pred cccccccccccCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 10 NRELYALLHLSPEA--SDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 10 ~~~~Y~vLgl~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
-..+|+||||+++| |..+||+|||++++.+|||++++ .+.|+.|++||++|+|+.+|..||.+|......
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-------EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-------hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 35689999999999 99999999999999999999763 468999999999999999999999998776554
No 51
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.7e-17 Score=120.36 Aligned_cols=70 Identities=46% Similarity=0.690 Sum_probs=64.7
Q ss_pred CccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhh
Q 042966 8 PPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIY 79 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~ 79 (143)
....+||+||||+++++..+|+++|+++++++|||+++.+.. .+.+.|..|++||.+|+||..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~--~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK--VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh--HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 456899999999999999999999999999999999986532 5889999999999999999999999986
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.63 E-value=3.9e-16 Score=126.09 Aligned_cols=75 Identities=39% Similarity=0.563 Sum_probs=70.5
Q ss_pred CCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhc
Q 042966 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYG 80 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~ 80 (143)
+.+..+|||.||||.++|+..+|.+|||+++.+||||-..+...+..|+.+|.-|..|-+||+||++|..||...
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 456789999999999999999999999999999999999988888899999999999999999999999999753
No 53
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.3e-15 Score=113.94 Aligned_cols=87 Identities=33% Similarity=0.512 Sum_probs=74.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCCCC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLE 89 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~~~ 89 (143)
..|+|+||||+++++..+|.+|||+|++.+|||++++++ ..+.|..|.+||++|.|...|+.||-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e----~k~~F~~iAtayeilkd~e~rt~ydya---------- 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE----SKKLFVKIATAYEILKDNETRTQYDYA---------- 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch----hhhhhhhhhcccccccchhhHHhHHHH----------
Confidence 579999999999999999999999999999999999876 458999999999999999999999964
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q 042966 90 LGPKLNKVEELKEELERLRQRKEQE 114 (143)
Q Consensus 90 ~~~~~~~~~e~~~~~~~~~~~~~~~ 114 (143)
+..|++.+-...++.+.+-..
T Consensus 98 ----ldhpd~~fynyyqyyr~r~ap 118 (329)
T KOG0722|consen 98 ----LDHPDEVFYNYYQYYRARYAP 118 (329)
T ss_pred ----hcCchHHHHHHHHHHHHHhcc
Confidence 334667777777666665544
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.8e-15 Score=122.44 Aligned_cols=71 Identities=34% Similarity=0.532 Sum_probs=65.1
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.-+.+|+|.||||+++++.++||+.||++|...||||+..+. |.+.|+.|+.||++|+|+.+|..||....
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~----A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPR----AEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChh----HHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 345799999999999999999999999999999999998654 99999999999999999999999997533
No 55
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=2.4e-14 Score=106.41 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=62.0
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 11 RELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQA--PHMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 11 ~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.|||++||||+. .+...++++|+.+.+.+|||+... +..+..+......||+||.||+||.+|+.|=....
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999996 899999999999999999999754 34455678889999999999999999999965444
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.6e-14 Score=111.35 Aligned_cols=75 Identities=52% Similarity=0.898 Sum_probs=66.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
..+||.||||.++++..+|++||+++++.||||+++.+ +..+..+|.+|.+||++|+||.+|..||.++..+...
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~--~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP--KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc--hhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 46899999999999999999999999999999998766 3445559999999999999999999999999865553
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.47 E-value=8.7e-14 Score=109.87 Aligned_cols=63 Identities=41% Similarity=0.678 Sum_probs=55.2
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC----chhHHHHHHHHHHHHHHHHHhcc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA----PHMKEIATENFQRICEAYEILSD 69 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~a~~~f~~i~~Ay~~L~d 69 (143)
.+...++|+||||++++|.++||++||+|++++|||+..+ +...+.++++|+.|++||++|+.
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999753 23346789999999999999985
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.2e-14 Score=114.10 Aligned_cols=93 Identities=33% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
.+...+||.|||+...++..+|++||+++++.+|||++... +.+++.+|..|.+||.+|+||.+|..||....-....
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags--q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~ 446 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS--QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVG 446 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch--hHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhc
Confidence 45678999999999999999999999999999999999866 3678999999999999999999999999754322211
Q ss_pred CCCCCCCCCCHHHHHHHH
Q 042966 87 GLELGPKLNKVEELKEEL 104 (143)
Q Consensus 87 ~~~~~~~~~~~~e~~~~~ 104 (143)
+ .+ ...+|-.++..+
T Consensus 447 ~--~~-a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 447 S--GG-AGFDPFNIFRAF 461 (486)
T ss_pred C--CC-cCcChhhhhhhc
Confidence 1 11 344566665544
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.44 E-value=1.7e-13 Score=95.39 Aligned_cols=56 Identities=34% Similarity=0.436 Sum_probs=49.3
Q ss_pred CCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 042966 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~ 68 (143)
..+...++|+||||++++|.++|+++|+++++.+|||++++ ...|.+|++||++|.
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-------TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHHh
Confidence 34456899999999999999999999999999999999653 457889999999985
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.38 E-value=6.1e-13 Score=110.16 Aligned_cols=77 Identities=27% Similarity=0.532 Sum_probs=70.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA--PHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
..|+|+|||+..+++..+||++||+|+.++||||.+. +..+++.++.+.+|++||..|+|...|..|-.+|.....+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 4689999999999999999999999999999999885 5667889999999999999999999999999998765543
No 61
>PHA02624 large T antigen; Provisional
Probab=99.37 E-value=4.3e-13 Score=115.24 Aligned_cols=70 Identities=30% Similarity=0.378 Sum_probs=61.3
Q ss_pred CCCCCCCCccccccccccccCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHh
Q 042966 1 MREAKDGPPNRELYALLHLSPEA--SDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYD 77 (143)
Q Consensus 1 ~~~~~~~~~~~~~Y~vLgl~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD 77 (143)
|.+.....+..++|+||||++++ +..+||+|||++++++|||++++ .+.|+.|++||++|+|+.+|..|.
T Consensus 1 MD~~Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-------eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 1 MDKTLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-------EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred CcchhchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-------HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 44444455678999999999999 99999999999999999999753 578999999999999999999993
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.36 E-value=3e-12 Score=93.87 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 22 EASDEEIRKAYRQWAQVYHPDKYQAP--HMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 22 ~as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
..+..+|+++|+++++.+|||+.++. ..+..+...+..|++||+||+||.+|+.|+....
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 35789999999999999999996543 2345578899999999999999999999987655
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.5e-11 Score=92.58 Aligned_cols=65 Identities=32% Similarity=0.564 Sum_probs=59.5
Q ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHH
Q 042966 9 PNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLI 75 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~ 75 (143)
=+.|+|+||.|.|..+.++||+.||+|++..|||+|+++. +.|...|..|.+||..|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~--~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA--ERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH--HHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4899999999999999999999999999999999999775 6799999999999999999975443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.1e-11 Score=95.72 Aligned_cols=104 Identities=33% Similarity=0.357 Sum_probs=80.9
Q ss_pred CCCCCCccccccccccccC---CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhh
Q 042966 3 EAKDGPPNRELYALLHLSP---EASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIY 79 (143)
Q Consensus 3 ~~~~~~~~~~~Y~vLgl~~---~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~ 79 (143)
...+.+...|+|.+|||+. .+++.+|.++.++.+.+||||+...... ......|..|+.||+||+|+.+|..||..
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~-~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN-KGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC-CCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 3456778899999999987 5889999999999999999999842221 22578899999999999999999999974
Q ss_pred cCCcccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 042966 80 GMEGLTSGLELGPKLNKVEELKEELERLRQRK 111 (143)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 111 (143)
.... .-..+...++.++++.|+...+..
T Consensus 114 df~a----dvppp~~~t~~~Ffe~w~pvFe~e 141 (379)
T COG5269 114 DFDA----DVPPPRIYTPDEFFEVWEPVFERE 141 (379)
T ss_pred cccc----CCCCccCCCchhHHHHHHHHHHhh
Confidence 3221 222345667889999988777653
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-08 Score=77.55 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=71.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH-HhcchhHHH--------------
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYE-ILSDENKRL-------------- 74 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~-~L~dp~~R~-------------- 74 (143)
-..||.||||..+|+..+++.+|+.|++.+|||.+.+.. ....|.+|.+||. ||+......
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a----daa~f~qideafrkvlq~~~~ktn~~qn~~edee~~~ 121 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA----DAARFIQIDEAFRKVLQEKFAKTNARQNIGEDEEDAE 121 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc----cHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHH
Confidence 467999999999999999999999999999999998654 6788999999999 776543331
Q ss_pred HHhhhcCCccc--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 042966 75 IYDIYGMEGLT--SGLELGPKLNKVEELKEELERLRQRKEQEKALA 118 (143)
Q Consensus 75 ~YD~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 118 (143)
.||........ .-+..|.++.+|......+.+.+..+.++++..
T Consensus 122 efdik~kapqhrhyls~egig~gtp~qrekhyqq~ra~kaaeqvle 167 (342)
T KOG0568|consen 122 EFDIKHKAPQHRHYLSFEGIGFGTPFQREKHYQQFRADKAAEQVLE 167 (342)
T ss_pred HhhhccCCchhhhhhcccCcccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111100000 012234556677777777766655555554433
No 66
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-07 Score=67.78 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=59.4
Q ss_pred CCCccccccccccccC--CCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 6 DGPPNRELYALLHLSP--EASDEEIRKAYRQWAQVYHPDKYQAP--HMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~--~as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
+.....+||.++|... ..++..+..-|.-..+++|||+...+ .....+.+....|++||.+|.||..|+.|=.
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456789999998654 46778888899999999999996533 2234688889999999999999999999954
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.4e-07 Score=62.51 Aligned_cols=54 Identities=28% Similarity=0.427 Sum_probs=45.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcch
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp 70 (143)
.+.--.||||+++++.+.||.++|+.....|||+.++|- .-..|+||+++|...
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY-------lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY-------LASKINEAKDLLEGT 108 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH-------HHHHHHHHHHHHhcc
Confidence 344446999999999999999999999999999999874 335799999998653
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.6e-07 Score=83.73 Aligned_cols=60 Identities=30% Similarity=0.444 Sum_probs=50.5
Q ss_pred CCCCCCccccccccccccCC----CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 042966 3 EAKDGPPNRELYALLHLSPE----ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68 (143)
Q Consensus 3 ~~~~~~~~~~~Y~vLgl~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~ 68 (143)
+.|.....-+-|+||.|+-+ ...+.||++|++|+.+|||||||.. -++|..|++||+.|+
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG------RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG------REMFERVNKAYELLS 1336 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH------HHHHHHHHHHHHHHH
Confidence 34555667788999999763 4568999999999999999999753 688999999999998
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00015 Score=53.90 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=56.4
Q ss_pred cccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 12 ELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAPH--MKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 12 ~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
+|+..+|+++. ...+.++..|+.+.+.+|||+..... ....+...+..++.||.+|.+|..|+.|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 56777787775 46777999999999999999976433 233477889999999999999999999965443
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.17 E-value=0.00057 Score=57.94 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=36.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHHHh
Q 042966 20 SPEASDEEIRKAYRQWAQVYHPDKYQAP----HMKEIATENFQRICEAYEIL 67 (143)
Q Consensus 20 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~----~~~~~a~~~f~~i~~Ay~~L 67 (143)
..=++.++||++||+.++..||||.+.. ..+-.+++.|-.+.+|+..-
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3347899999999999999999997633 22446777777777777643
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0013 Score=48.92 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=48.8
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC----chhHHHHHHHHHHHHHHHHHh
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA----PHMKEIATENFQRICEAYEIL 67 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~a~~~f~~i~~Ay~~L 67 (143)
.+.|.+||+....+..+|+++|+++....|||+-.. ..-...+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999997542 223456889999999999753
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.40 E-value=0.055 Score=38.38 Aligned_cols=52 Identities=29% Similarity=0.324 Sum_probs=36.0
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcch
Q 042966 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70 (143)
Q Consensus 12 ~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp 70 (143)
.-..||||++..+.++|.+.|.+|-...+|+++++.- .=..|..|.+.|...
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY-------LQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY-------LQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH-------HHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999998643 223566677666543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=90.93 E-value=0.87 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=25.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHH
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQ 37 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~ 37 (143)
-.+-|++|||+++.+.+.|-.+|.....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999998877
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=89.98 E-value=1.1 Score=31.12 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-CchhHHHHHHHHHHHHHHHHHhcchh
Q 042966 21 PEASDEEIRKAYRQWAQVYHPDKYQ-APHMKEIATENFQRICEAYEILSDEN 71 (143)
Q Consensus 21 ~~as~~~Ik~ayr~l~~~~HPDk~~-~~~~~~~a~~~f~~i~~Ay~~L~dp~ 71 (143)
+..+..+++.+.|..-+..|||..+ .|..+...++-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3456788999999999999999754 56656667777888888888777654
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=1.4 Score=35.64 Aligned_cols=56 Identities=36% Similarity=0.502 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 23 ASDEEIRKAYRQWAQVYHPDKYQA-PHMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 23 as~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
++...|+.+|+..+...||++... ........+.+++|.+||.+|.+...|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 567889999999999999998742 11112357889999999999998665555554
No 76
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=6.9 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=30.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAP 47 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~ 47 (143)
++|--+++|+.|.++..+|+.+-++.++++.--..++.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 45677889999999999999999888888766666543
No 77
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=83.04 E-value=9.7 Score=24.60 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=40.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSD 69 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~d 69 (143)
++|--.+.|+.|.+|.++|+.|-.+.+++..=-..++....+.-......|..+-..|.|
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999999999988766666554333333334455555555543
No 78
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=77.76 E-value=4.4 Score=30.73 Aligned_cols=40 Identities=33% Similarity=0.335 Sum_probs=30.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcch
Q 042966 20 SPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70 (143)
Q Consensus 20 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp 70 (143)
+++||.+||.+|+.++..+|--| ...-.+|..||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-----------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-----------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHH
Confidence 46899999999999999998222 34566789999887543
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=57.19 E-value=9.7 Score=16.33 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhc
Q 042966 56 NFQRICEAYEILS 68 (143)
Q Consensus 56 ~f~~i~~Ay~~L~ 68 (143)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887764
No 80
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=60 Score=23.03 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.4
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 042966 13 LYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA 46 (143)
Q Consensus 13 ~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~ 46 (143)
--.||+|....+.++|.+.|..|-....+.++++
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3479999999999999999999999998888875
No 81
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.38 E-value=53 Score=29.80 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=46.2
Q ss_pred cccccccccccC---------CCCHHHHHHHHHH---HHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 042966 10 NRELYALLHLSP---------EASDEEIRKAYRQ---WAQVYHPDKYQAPHMKEIATENFQRICEAYEILS 68 (143)
Q Consensus 10 ~~~~Y~vLgl~~---------~as~~~Ik~ayr~---l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~ 68 (143)
..++|.||...+ +.+...|...|+. ..+.++||.+..-.......+.|..-...|.|++
T Consensus 623 kLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVit 693 (843)
T KOG0906|consen 623 KLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVIT 693 (843)
T ss_pred cceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeee
Confidence 467899997665 5689999999986 5688999997644444568888999998898865
No 82
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=34.90 E-value=52 Score=16.98 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhCC
Q 042966 25 DEEIRKAYRQWAQVYHP 41 (143)
Q Consensus 25 ~~~Ik~ayr~l~~~~HP 41 (143)
.++.|.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788899999999983
No 83
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=28.50 E-value=11 Score=23.30 Aligned_cols=31 Identities=32% Similarity=0.792 Sum_probs=19.3
Q ss_pred cccccccccccCCCCHHHH-HHHHHHHHHHhCCCCC
Q 042966 10 NRELYALLHLSPEASDEEI-RKAYRQWAQVYHPDKY 44 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~I-k~ayr~l~~~~HPDk~ 44 (143)
+.+++++||+++ +++ ......+....|||=.
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 457888998865 444 4455667778888754
No 84
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=26.59 E-value=98 Score=22.65 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHH
Q 042966 51 EIATENFQRICEAYEILSDENKRLIY 76 (143)
Q Consensus 51 ~~a~~~f~~i~~Ay~~L~dp~~R~~Y 76 (143)
++.......|.++.++|.||.++..=
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv~ 87 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEVE 87 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHH
Confidence 45788899999999999999877653
No 85
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=38 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=14.6
Q ss_pred HHHHhcchhHHHHHhhhcCC
Q 042966 63 AYEILSDENKRLIYDIYGME 82 (143)
Q Consensus 63 Ay~~L~dp~~R~~YD~~~~~ 82 (143)
-|..||||...-.-|.....
T Consensus 148 PYhLLSDpk~e~ik~lGa~k 167 (211)
T KOG0855|consen 148 PYHLLSDPKNEVIKDLGAPK 167 (211)
T ss_pred CeeeecCcchhHHHHhCCCC
Confidence 58889999887777765443
No 86
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=25.44 E-value=75 Score=21.31 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=23.4
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCC
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKY 44 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~ 44 (143)
-.+|.||-++...|..+|=+.-...++.-+||-.
T Consensus 11 dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 11 DQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 4689999999988877755554444555566643
No 87
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.78 E-value=57 Score=18.83 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=18.1
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 042966 16 LLHLSPEASDEEIRKAYRQWAQV 38 (143)
Q Consensus 16 vLgl~~~as~~~Ik~ayr~l~~~ 38 (143)
|=|||++++.++|+..|......
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 45789999999999998875443
No 88
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=21.53 E-value=1.7e+02 Score=19.92 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.5
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 042966 15 ALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAP 47 (143)
Q Consensus 15 ~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~ 47 (143)
.||.||+.++.+.+|.+-.++...+.--+++.|
T Consensus 25 ~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G~p 57 (120)
T PRK15321 25 RLLALPESASSETLKDSIYQEMNAFKDPNSGDS 57 (120)
T ss_pred HHHhCCcccCcHHHHHHHHHHHHHhCCCCCCCc
Confidence 477899999999999999998888875555544
No 89
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=20.03 E-value=2.7e+02 Score=18.21 Aligned_cols=48 Identities=15% Similarity=0.370 Sum_probs=30.2
Q ss_pred cccCCC-CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHh
Q 042966 18 HLSPEA-SDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYD 77 (143)
Q Consensus 18 gl~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD 77 (143)
|++|+. ...+|-+.+..++..+++ . ....+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~-------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---G-------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---C-------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 455543 345566777777777766 2 245677788888 78888888888
Done!