Query 042966
Match_columns 143
No_of_seqs 161 out of 1578
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.8E-24 9.5E-29 138.9 8.1 74 10-87 2-75 (77)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 3.8E-24 1.3E-28 139.8 8.8 79 5-85 3-81 (82)
3 2ctp_A DNAJ homolog subfamily 99.9 6.2E-24 2.1E-28 137.6 7.7 74 7-84 3-76 (78)
4 2dn9_A DNAJ homolog subfamily 99.9 9.3E-24 3.2E-28 137.0 7.5 75 7-84 3-77 (79)
5 2dmx_A DNAJ homolog subfamily 99.9 2E-23 6.8E-28 139.2 8.7 81 5-87 3-83 (92)
6 2ctr_A DNAJ homolog subfamily 99.9 1.5E-23 5.2E-28 138.8 7.3 76 7-86 3-78 (88)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.5E-23 8.5E-28 137.8 8.2 74 7-84 13-86 (88)
8 2och_A Hypothetical protein DN 99.9 2.6E-23 8.8E-28 133.1 7.5 69 7-81 4-72 (73)
9 2lgw_A DNAJ homolog subfamily 99.9 3.6E-23 1.2E-27 140.0 7.0 74 11-86 2-75 (99)
10 1wjz_A 1700030A21RIK protein; 99.9 5.4E-23 1.8E-27 137.4 7.2 77 7-83 12-91 (94)
11 2ctq_A DNAJ homolog subfamily 99.9 1.1E-22 3.8E-27 140.3 7.1 76 7-85 16-91 (112)
12 1bq0_A DNAJ, HSP40; chaperone, 99.9 5.8E-23 2E-27 139.7 5.1 75 10-87 2-76 (103)
13 2o37_A Protein SIS1; HSP40, J- 99.9 1.6E-22 5.5E-27 134.9 7.1 73 8-86 5-77 (92)
14 2ctw_A DNAJ homolog subfamily 99.9 1.9E-22 6.6E-27 138.5 7.6 76 6-84 12-87 (109)
15 2yua_A Williams-beuren syndrom 99.9 2.4E-22 8.2E-27 135.8 7.9 73 5-80 11-83 (99)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 2.2E-22 7.6E-27 138.0 6.0 75 7-81 11-86 (109)
17 2l6l_A DNAJ homolog subfamily 99.8 2.8E-21 9.6E-26 140.0 7.9 75 7-81 6-83 (155)
18 3hho_A CO-chaperone protein HS 99.8 2.5E-20 8.6E-25 137.6 9.9 73 9-81 2-78 (174)
19 1fpo_A HSC20, chaperone protei 99.8 6.6E-21 2.2E-25 140.4 6.3 71 11-81 1-75 (171)
20 3apq_A DNAJ homolog subfamily 99.8 8.7E-21 3E-25 141.8 6.8 73 11-86 2-74 (210)
21 3bvo_A CO-chaperone protein HS 99.8 1.3E-20 4.4E-25 142.6 6.7 76 6-81 38-117 (207)
22 2ys8_A RAB-related GTP-binding 99.8 1.1E-20 3.6E-25 125.7 5.3 62 10-75 26-87 (90)
23 3lz8_A Putative chaperone DNAJ 99.8 4.6E-21 1.6E-25 153.9 1.6 128 6-138 23-157 (329)
24 1faf_A Large T antigen; J doma 99.8 2.6E-20 8.8E-25 121.1 3.6 74 1-82 1-76 (79)
25 2pf4_E Small T antigen; PP2A, 99.8 7E-21 2.4E-25 140.4 0.1 74 1-81 1-76 (174)
26 3uo3_A J-type CO-chaperone JAC 99.8 3.9E-21 1.3E-25 142.8 -2.5 69 6-80 6-81 (181)
27 1gh6_A Large T antigen; tumor 99.8 1.3E-20 4.3E-25 130.5 -0.9 69 9-84 6-76 (114)
28 1iur_A KIAA0730 protein; DNAJ 99.8 1.7E-19 5.7E-24 119.5 3.9 67 5-73 10-76 (88)
29 1n4c_A Auxilin; four helix bun 99.8 2.2E-19 7.5E-24 133.2 3.9 67 10-76 116-182 (182)
30 3ag7_A Putative uncharacterize 99.7 2.2E-18 7.5E-23 117.8 4.2 63 8-71 38-104 (106)
31 2qwo_B Putative tyrosine-prote 99.7 2.2E-18 7.5E-23 114.9 3.8 59 11-69 33-91 (92)
32 2guz_A Mitochondrial import in 99.7 5.9E-18 2E-22 107.7 4.1 61 6-73 9-70 (71)
33 3apo_A DNAJ homolog subfamily 99.7 2.4E-18 8.3E-23 149.8 0.8 76 7-85 17-92 (780)
34 2y4t_A DNAJ homolog subfamily 99.3 1.5E-12 5E-17 103.5 5.7 69 10-78 381-449 (450)
35 2guz_B Mitochondrial import in 99.0 2.5E-10 8.5E-15 71.1 4.6 53 11-70 4-59 (65)
36 2pzi_A Probable serine/threoni 91.4 0.14 4.7E-06 43.7 3.6 46 10-66 628-675 (681)
37 1qqr_A Streptokinase domain B; 49.1 13 0.00044 25.7 2.8 32 12-43 33-64 (138)
38 1ug2_A 2610100B20RIK gene prod 27.9 34 0.0012 22.0 2.1 24 22-45 67-90 (95)
39 2lxi_A RNA-binding protein 10; 26.8 46 0.0016 20.1 2.6 21 16-36 6-26 (91)
40 4a3n_A Transcription factor SO 25.6 99 0.0034 17.6 5.4 41 29-77 14-54 (71)
41 2cqh_A IGF-II mRNA-binding pro 22.9 1.1E+02 0.0036 18.1 3.8 27 8-35 6-32 (93)
42 1l3k_A Heterogeneous nuclear r 22.7 62 0.0021 21.8 2.9 20 16-35 18-37 (196)
43 2kvi_A Nuclear polyadenylated 22.0 57 0.0019 19.7 2.3 33 1-34 1-34 (96)
44 2cqn_A Formin-binding protein 21.6 1.4E+02 0.0049 18.0 5.2 54 23-78 6-60 (77)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=2.8e-24 Score=138.93 Aligned_cols=74 Identities=51% Similarity=0.840 Sum_probs=68.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 87 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~ 87 (143)
..|||+||||++++|.++||++|+++++.+|||+++++. +.+.|+.|++||++|+||.+|..||.+|..+...+
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 75 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGS 75 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT----HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCSS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc----HHHHHHHHHHHHHHHCCHHHHHHHHHHcccccccC
Confidence 368999999999999999999999999999999998654 78899999999999999999999999998877643
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=139.76 Aligned_cols=79 Identities=42% Similarity=0.643 Sum_probs=70.8
Q ss_pred CCCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 5 KDGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 5 ~~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
.+.+...|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus 3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN--KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT--HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4456679999999999999999999999999999999999754 25688999999999999999999999999987664
Q ss_pred c
Q 042966 85 T 85 (143)
Q Consensus 85 ~ 85 (143)
.
T Consensus 81 ~ 81 (82)
T 2ej7_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=137.58 Aligned_cols=74 Identities=43% Similarity=0.684 Sum_probs=67.9
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
.....|||+||||+++++.++||++|+++++++|||+++.+. +.+.|+.|++||++|+||.+|..||.++..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG----ATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHH----HHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc----HHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 456789999999999999999999999999999999998643 78999999999999999999999999887654
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=9.3e-24 Score=137.00 Aligned_cols=75 Identities=43% Similarity=0.659 Sum_probs=67.4
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
.....|||+||||+++++.++||++|+++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||.++..+.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD---PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC---TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 45578999999999999999999999999999999999743 2378999999999999999999999999887654
No 5
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=139.22 Aligned_cols=81 Identities=38% Similarity=0.615 Sum_probs=72.3
Q ss_pred CCCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 5 KDGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 5 ~~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
+..+...|||+||||+++++.++||++|++|++++|||+++... +.+.+.|+.|++||++|+||.+|..||..+..++
T Consensus 3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 3 SGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK--EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS--HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 44556789999999999999999999999999999999997542 5688999999999999999999999999998776
Q ss_pred cCC
Q 042966 85 TSG 87 (143)
Q Consensus 85 ~~~ 87 (143)
..+
T Consensus 81 ~~~ 83 (92)
T 2dmx_A 81 RAG 83 (92)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 6
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=138.82 Aligned_cols=76 Identities=41% Similarity=0.664 Sum_probs=68.9
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
.....+||+||||+++++.++||++|++|++++|||+++.+ .+.+.|+.|++||++|+||.+|..||.++..+...
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP----DAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH----HHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 34578999999999999999999999999999999999854 38899999999999999999999999998766553
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.5e-23 Score=137.79 Aligned_cols=74 Identities=42% Similarity=0.668 Sum_probs=67.6
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
.....|||+||||+++++.++||++|+++++++|||+++++. +.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 86 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG----AEDRFIQISKAYEILSNEEKRTNYDHYGSGPS 86 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT----HHHHHHHHHHHHHHHHSHHHHHHHHHHTTCCC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh----HHHHHHHHHHHHHHHCCHHHHHHHHHcCCCCC
Confidence 345789999999999999999999999999999999998754 78999999999999999999999999987653
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=2.6e-23 Score=133.13 Aligned_cols=69 Identities=46% Similarity=0.737 Sum_probs=62.1
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.....+||+||||+++++.++||++|+++++++|||++++. .+.|+.|++||++|+||.+|..||.+|.
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG------AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34578999999999999999999999999999999999753 4789999999999999999999999875
No 9
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=140.00 Aligned_cols=74 Identities=47% Similarity=0.790 Sum_probs=65.3
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
.|||+||||+++++.++||++|+++++++|||+++... +.+.+.|+.|++||++|+||.+|..||.++..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~--~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK--EFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC--HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 58999999999999999999999999999999997542 568899999999999999999999999998777653
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.88 E-value=5.4e-23 Score=137.39 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=68.4
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC---chhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA---PHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEG 83 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~ 83 (143)
.....|||+||||+++++.++||++|++|++++|||+++. +.....+.+.|++|++||+||+||.+|..||.....+
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 4567899999999999999999999999999999999863 2334678999999999999999999999999986543
No 11
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=140.28 Aligned_cols=76 Identities=30% Similarity=0.421 Sum_probs=68.3
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
.....|||+||||+++++.++||+||++|++++|||+++... .+.+.|++|++||+||+||.+|..||.++..+..
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP---KAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS---THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH---HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 356799999999999999999999999999999999998431 3789999999999999999999999999876654
No 12
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.87 E-value=5.8e-23 Score=139.69 Aligned_cols=75 Identities=43% Similarity=0.747 Sum_probs=67.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccCC
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 87 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~~ 87 (143)
..|||+||||++++|.++||++|++|++++|||+++.. +.+.+.|++|++||++|+||.+|..||.++..+...+
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 76 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD---KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQG 76 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT---CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhccc
Confidence 46899999999999999999999999999999999753 1278899999999999999999999999998877643
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-22 Score=134.95 Aligned_cols=73 Identities=49% Similarity=0.802 Sum_probs=66.3
Q ss_pred CccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 8 PPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
....|||+||||+++++.++||++|++|++++|||+++.. .+.|++|++||++|+||.+|..||.++..+...
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD------TEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC------HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh------HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 4578999999999999999999999999999999999754 358999999999999999999999998776654
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.9e-22 Score=138.52 Aligned_cols=76 Identities=41% Similarity=0.650 Sum_probs=68.4
Q ss_pred CCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
......+||+||||+++++.++||++|++|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||.++..+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN---PEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC---HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 455678999999999999999999999999999999999753 3478999999999999999999999999876554
No 15
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=135.77 Aligned_cols=73 Identities=32% Similarity=0.468 Sum_probs=65.8
Q ss_pred CCCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhc
Q 042966 5 KDGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYG 80 (143)
Q Consensus 5 ~~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~ 80 (143)
.......+||+||||+++++.++||++|++|+++||||+++.. +.+.+.|+.|++||+||+||.+|..||...
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS---AEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC---SHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999743 237889999999999999999999999854
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.86 E-value=2.2e-22 Score=138.03 Aligned_cols=75 Identities=32% Similarity=0.471 Sum_probs=68.4
Q ss_pred CCccccccccccccCCC-CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 7 GPPNRELYALLHLSPEA-SDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.....|||+||||++++ +.++||+||+++++.+|||+++++...+.+.+.|++|++||++|+||.+|..||..+.
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 34578999999999999 9999999999999999999998744556789999999999999999999999999864
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=139.97 Aligned_cols=75 Identities=27% Similarity=0.524 Sum_probs=66.8
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCc---hhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAP---HMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.....|||+||||+++++.++||+||++|++++|||+++.+ ..++.+.+.|..|++||+||+||.+|+.||..+.
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45568999999999999999999999999999999998754 3345688999999999999999999999997643
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.83 E-value=2.5e-20 Score=137.59 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=63.7
Q ss_pred ccccccccccccCCCC--HHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 9 PNRELYALLHLSPEAS--DEEIRKAYRQWAQVYHPDKYQAPH--MKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
+..|||+||||+++++ ..+||++|+++++.+|||++++.. .+..+...|..|++||+||+||.+|+.||....
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 4689999999999887 999999999999999999987543 234588999999999999999999999998654
No 19
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.82 E-value=6.6e-21 Score=140.38 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=63.9
Q ss_pred ccccccccccCCC--CHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 11 RELYALLHLSPEA--SDEEIRKAYRQWAQVYHPDKYQAPH--MKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 11 ~~~Y~vLgl~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
.|||+||||++++ |..+||++|+++++.+|||++++.. .+..+...|..|++||+||+||.+|+.||....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3899999999998 9999999999999999999987543 344678899999999999999999999998765
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=8.7e-21 Score=141.85 Aligned_cols=73 Identities=42% Similarity=0.672 Sum_probs=66.3
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcccC
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 86 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~~ 86 (143)
.|||+||||+++++.++||+|||++++++|||+++.. +.+.+.|+.|++||++|+||.+|+.||.+|..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~---~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN---PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC---TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 5899999999999999999999999999999999743 237899999999999999999999999999877653
No 21
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=142.62 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=65.5
Q ss_pred CCCccccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcC
Q 042966 6 DGPPNRELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAP--HMKEIATENFQRICEAYEILSDENKRLIYDIYGM 81 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~ 81 (143)
+.....|||+||||+++ ++..+||++||+|++++|||++++. ..+..+.+.|..|++||+||+||.+|+.||....
T Consensus 38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 33457899999999986 7999999999999999999998753 2345678999999999999999999999997543
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=125.69 Aligned_cols=62 Identities=32% Similarity=0.524 Sum_probs=57.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHH
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLI 75 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~ 75 (143)
..|||+||||+++++.++||++|++|++++|||+++++. +.+.|++|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG----SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT----HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc----HHHHHHHHHHHHHHHCCcccccC
Confidence 589999999999999999999999999999999998654 78889999999999999998753
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.80 E-value=4.6e-21 Score=153.93 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=12.1
Q ss_pred CCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 6 DGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
+.+...|||+||||+++||.++||+|||+|+++||||+++++. +.++|++|++||++|+||.+|+.||.++.....
T Consensus 23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 98 (329)
T 3lz8_A 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND----AEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRND 98 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChH----HHHHHHHHHHHHHHhhhhhhhcccchhhccccC
Confidence 3455689999999999999999999999999999999987643 789999999999999999999999998443211
Q ss_pred CCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccEEEeechhhhcCC
Q 042966 86 SGLE-------LGPKLNKVEELKEELERLRQRKEQEKALAHFRPSGTILASLSLPQFLEG 138 (143)
Q Consensus 86 ~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 138 (143)
.++. .+.......++|..++--....... ........-.+.+.+++..+|.|
T Consensus 99 ~~~~~~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~-~~~~~g~Dl~~~l~vsleea~~G 157 (329)
T 3lz8_A 99 PGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRR-QHAARGHDLEIEVAVFLEETLAE 157 (329)
T ss_dssp ---------------------------------------CCCCCCEEEEECCCTTGGGSC
T ss_pred CCcccccccccCCcCCCchhhhhHhhhcCcCCCCCC-CCcCCCCCEEEEEecchhhhhhc
Confidence 1110 0001113456666554321110000 01122333355667778888866
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.79 E-value=2.6e-20 Score=121.09 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=63.3
Q ss_pred CCCCCCCCccccccccccccCC--CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 1 MREAKDGPPNRELYALLHLSPE--ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 1 ~~~~~~~~~~~~~Y~vLgl~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
|.......+..++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+||.+|..++
T Consensus 1 md~~~~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------~~~f~~i~~AYe~L~~~~~r~~~~- 72 (79)
T 1faf_A 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-------HALMQELNSLWGTFKTEVYNLRMN- 72 (79)
T ss_dssp CCCCCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-------HHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CcccccchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------HHHHHHHHHHHHHHhhHHHHHHHh-
Confidence 4555555667899999999999 999999999999999999999864 468999999999999999998843
Q ss_pred hcCC
Q 042966 79 YGME 82 (143)
Q Consensus 79 ~~~~ 82 (143)
+|..
T Consensus 73 ~g~~ 76 (79)
T 1faf_A 73 LGGT 76 (79)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 4443
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.79 E-value=7e-21 Score=140.36 Aligned_cols=74 Identities=26% Similarity=0.307 Sum_probs=63.6
Q ss_pred CCCCCCCCccccccccccccCCCC--HHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 1 MREAKDGPPNRELYALLHLSPEAS--DEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 1 ~~~~~~~~~~~~~Y~vLgl~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
|.+..+.....+||+||||+++++ .++||+|||++++++|||+++++ +.|++|++||++|+||.+|+.||.
T Consensus 1 MD~~l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~-------e~F~~I~~AYevLsdp~kR~~YD~ 73 (174)
T 2pf4_E 1 MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-------EKMKKMNTLYKKMEDGVKYAHQPD 73 (174)
T ss_dssp CTTTSCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC-------TTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred CcchhcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH-------HHHHHHHHHHHHhCCHHHHHHHhc
Confidence 455555667789999999999998 69999999999999999998753 679999999999999999999999
Q ss_pred hcC
Q 042966 79 YGM 81 (143)
Q Consensus 79 ~~~ 81 (143)
+|.
T Consensus 74 ~G~ 76 (174)
T 2pf4_E 74 FGG 76 (174)
T ss_dssp GGG
T ss_pred cCC
Confidence 986
No 26
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.78 E-value=3.9e-21 Score=142.75 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=61.2
Q ss_pred CCCccccccccc------cccC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 6 DGPPNRELYALL------HLSP-EASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 6 ~~~~~~~~Y~vL------gl~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
+.+...|||+|| |+++ ++|..+||++||+|++++|||++++ +.+.|..|++||+||+||.+|+.||.
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~------a~~~f~~i~~AY~vL~dp~~R~~Yd~ 79 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ------GSEQSSTLNQAYHTLKDPLRRSQYML 79 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS------CSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc------HHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 345678999999 5765 8999999999999999999999975 46789999999999999999999998
Q ss_pred hc
Q 042966 79 YG 80 (143)
Q Consensus 79 ~~ 80 (143)
..
T Consensus 80 ~l 81 (181)
T 3uo3_A 80 KL 81 (181)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.77 E-value=1.3e-20 Score=130.47 Aligned_cols=69 Identities=26% Similarity=0.274 Sum_probs=62.3
Q ss_pred ccccccccccccCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCcc
Q 042966 9 PNRELYALLHLSPEASD--EEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 84 (143)
Q Consensus 9 ~~~~~Y~vLgl~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~ 84 (143)
...+||+||||+++++. ++||+|||+|++++|||++++ .+.|++|++||+||+||.+|+.||.++..+.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-------~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~ 76 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 76 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-------TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-------HHHHHHHHHHHHHHCCHHHHHHhhhcccccc
Confidence 45799999999999998 999999999999999999875 3689999999999999999999998775443
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.77 E-value=1.7e-19 Score=119.54 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=60.2
Q ss_pred CCCCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHH
Q 042966 5 KDGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73 (143)
Q Consensus 5 ~~~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R 73 (143)
+......++|+||||++++|.++||+||++|+++||||++++.. +.+.+.|+.|++||++|+|...|
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~--~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH--DIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH--HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch--HHHHHHHHHHHHHHHHHHhhccc
Confidence 44566789999999999999999999999999999999987643 56889999999999999998777
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.76 E-value=2.2e-19 Score=133.15 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=61.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIY 76 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Y 76 (143)
..+||+||||++.++.++||+|||++++++|||++++......+.+.|+.|++||++|+||.+|..|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 4699999999999999999999999999999999986544456899999999999999999999876
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=2.2e-18 Score=117.77 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=54.7
Q ss_pred CccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCC----chhHHHHHHHHHHHHHHHHHhcchh
Q 042966 8 PPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQA----PHMKEIATENFQRICEAYEILSDEN 71 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~a~~~f~~i~~Ay~~L~dp~ 71 (143)
+.+.+||+|||++. +|.++||+|||++++++||||+++ +..+..|.+.|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 34579999999996 999999999999999999999763 2334568999999999999999985
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.72 E-value=2.2e-18 Score=114.90 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=53.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 042966 11 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSD 69 (143)
Q Consensus 11 ~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~d 69 (143)
.++|++|||++.+|.++||+|||++++++|||++++......+...|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998654335688999999999999975
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.9e-18 Score=107.73 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=53.6
Q ss_pred CCCccccccccccccC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHH
Q 042966 6 DGPPNRELYALLHLSP-EASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKR 73 (143)
Q Consensus 6 ~~~~~~~~Y~vLgl~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R 73 (143)
+.+...++|+||||++ ++|.++||++|++|++.+|||++++ .+.|++|++||++|+++..|
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-------HHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------HHHHHHHHHHHHHHhhhhhc
Confidence 3455679999999999 7999999999999999999999754 35899999999999998655
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.69 E-value=2.4e-18 Score=149.81 Aligned_cols=76 Identities=42% Similarity=0.673 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcCCccc
Q 042966 7 GPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLT 85 (143)
Q Consensus 7 ~~~~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~~~~~~~~ 85 (143)
...+.|||+||||++++|.++||+|||+|++++|||++++. +.+.+.|++|++||++|+||.+|+.||.+|..+..
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~---~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~ 92 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN---PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 92 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC--------------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---hHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence 44578999999999999999999999999999999998643 34788999999999999999999999999887654
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.32 E-value=1.5e-12 Score=103.54 Aligned_cols=69 Identities=38% Similarity=0.575 Sum_probs=59.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHhh
Q 042966 10 NRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDI 78 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD~ 78 (143)
..++|.+||+...++..+|+++|+++++.+|||+.+.+..+..+...|..|.+||++|+||.+|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 358999999999999999999999999999999998776567789999999999999999999999997
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.5e-10 Score=71.14 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=46.0
Q ss_pred ccccccccccCC---CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcch
Q 042966 11 RELYALLHLSPE---ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDE 70 (143)
Q Consensus 11 ~~~Y~vLgl~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp 70 (143)
..-|.||||+++ ++.++|+++|++|....|||+++++ .....|++|+++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~-------yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF-------YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHHHHH
Confidence 356889999999 9999999999999999999998764 5677899999988643
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.41 E-value=0.14 Score=43.66 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=35.2
Q ss_pred cccccccccccCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 042966 10 NRELYALLHLSPEASD--EEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEI 66 (143)
Q Consensus 10 ~~~~Y~vLgl~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~ 66 (143)
.++||.+||++-+... ..|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----------HHHHHHHHHhccc
Confidence 4459999999666544 67999999999976544 3568888888765
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=49.10 E-value=13 Score=25.69 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.1
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHhCCCC
Q 042966 12 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDK 43 (143)
Q Consensus 12 ~~Y~vLgl~~~as~~~Ik~ayr~l~~~~HPDk 43 (143)
-++.+|.|....+.++++++-..+..++||+-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34677888889999999999999999999984
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=27.88 E-value=34 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC
Q 042966 22 EASDEEIRKAYRQWAQVYHPDKYQ 45 (143)
Q Consensus 22 ~as~~~Ik~ayr~l~~~~HPDk~~ 45 (143)
+-++.+|+.+|+.|.+++|--+..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999876543
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=26.83 E-value=46 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.6
Q ss_pred cccccCCCCHHHHHHHHHHHH
Q 042966 16 LLHLSPEASDEEIRKAYRQWA 36 (143)
Q Consensus 16 vLgl~~~as~~~Ik~ayr~l~ 36 (143)
|=|||.++|.++|+..|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998753
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=25.62 E-value=99 Score=17.57 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcchhHHHHHh
Q 042966 29 RKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYD 77 (143)
Q Consensus 29 k~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~YD 77 (143)
.+.++...+.-||+.. ..+....|.+.|..|++..+....+
T Consensus 14 ~~~~r~~~~~~~p~~~--------~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH--------NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC--------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5566777778888765 3567788999999998665444333
No 41
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.86 E-value=1.1e+02 Score=18.10 Aligned_cols=27 Identities=22% Similarity=0.510 Sum_probs=20.3
Q ss_pred CccccccccccccCCCCHHHHHHHHHHH
Q 042966 8 PPNRELYALLHLSPEASDEEIRKAYRQW 35 (143)
Q Consensus 8 ~~~~~~Y~vLgl~~~as~~~Ik~ayr~l 35 (143)
+....-| |=+|+.+++.++|+..|.+.
T Consensus 6 ~~~~~l~-V~nLp~~~t~~~l~~~F~~~ 32 (93)
T 2cqh_A 6 SGMNKLY-IGNLSPAVTADDLRQLFGDR 32 (93)
T ss_dssp CCCCCEE-EECCCTTCCHHHHHHHHHHT
T ss_pred CCCcEEE-EeCCCCCCCHHHHHHHHHHc
Confidence 3344445 66899999999999988663
No 42
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=22.68 E-value=62 Score=21.84 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=17.3
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 042966 16 LLHLSPEASDEEIRKAYRQW 35 (143)
Q Consensus 16 vLgl~~~as~~~Ik~ayr~l 35 (143)
|-||+.+++.++|+..|...
T Consensus 18 V~nLp~~~te~~l~~~F~~~ 37 (196)
T 1l3k_A 18 IGGLSFETTDESLRSHFEQW 37 (196)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 55899999999999998764
No 43
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=22.03 E-value=57 Score=19.70 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=19.9
Q ss_pred CCCCCCCCccccccccccccC-CCCHHHHHHHHHH
Q 042966 1 MREAKDGPPNRELYALLHLSP-EASDEEIRKAYRQ 34 (143)
Q Consensus 1 ~~~~~~~~~~~~~Y~vLgl~~-~as~~~Ik~ayr~ 34 (143)
|...+..++...-| |=+|+. +++.++|+..|.+
T Consensus 1 ~~~~~~~~~~~~l~-V~nlp~~~~t~~~l~~~F~~ 34 (96)
T 2kvi_A 1 MTEMHNIPPKSRLF-IGNLPLKNVSKEDLFRIFSP 34 (96)
T ss_dssp --------CCEEEE-EESSTTSCCCHHHHHHHHTT
T ss_pred CCccccCCCCCEEE-EeCCCcccCCHHHHHHHHHh
Confidence 34455555566666 568998 9999999988865
No 44
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.64 E-value=1.4e+02 Score=18.01 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHhcc-hhHHHHHhh
Q 042966 23 ASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSD-ENKRLIYDI 78 (143)
Q Consensus 23 as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~Ay~~L~d-p~~R~~YD~ 78 (143)
.-...++.+|+.+.+...|....... =+.+...|.... +|..+.+ ..++.+|+.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~-We~vr~~~e~~~-~fkav~~E~eR~~lFee 60 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAV-WEDIRERFVKEP-AFEDITLESERKRIFKD 60 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCC-HHHHHHHHTTSH-HHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHccCH-HHHhcCCHHHHHHHHHH
Confidence 34677899999999999877665322 133444454444 5776654 344455543
Done!