BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042968
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 14 QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
LKD +L+GGIPFN+A+GM FEY G DPRFNK FN M +++++ M I E+Y GF+ +
Sbjct: 142 HLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 201
Query: 74 KQLVDVGG 81
K LVDVGG
Sbjct: 202 KSLVDVGG 209
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 85.5 bits (210), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
LKD +L+GGIPFN+A+GM FEY G DPRFN+ FN M N++ ++ + E Y GF+ +
Sbjct: 144 LKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLG 203
Query: 75 QLVDVGG 81
LVDVGG
Sbjct: 204 TLVDVGG 210
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
LKD ILEGGIPFN+A+GM+IF+Y G D R NK FN M + +++ M I E Y GF+ +
Sbjct: 146 LKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLT 205
Query: 75 QLVDVGG 81
+VDVGG
Sbjct: 206 TIVDVGG 212
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 26 FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81
F HG+ +E++G D + N+ FN +M + + M + E Y GF+ I LVDVGG
Sbjct: 163 FKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGG 218
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 42.7 bits (99), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 26 FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81
F HG+ +E+ G D + N+ FN + + + E Y GF+ I LVDVGG
Sbjct: 163 FKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGG 218
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 14 QLKDTILEGGIP-FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
+LK I E + F G ++++ +P +N FN AM + + L+ +R+ FD
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDG 188
Query: 73 IKQLVDVGG 81
++ +VDVGG
Sbjct: 189 LESIVDVGG 197
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 14 QLKDTILEGGIP-FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
+LK I E + F G ++++ +P +N FN A + + L+ +R+ FD
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDG 188
Query: 73 IKQLVDVGG 81
++ +VDVGG
Sbjct: 189 LESIVDVGG 197
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 31/51 (60%)
Query: 31 GMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81
G ++E++ +P +N +N A+ + + ++ +++ F+ ++ +VDVGG
Sbjct: 152 GCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGG 202
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 14 QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
QL ++ G F+ A+G ++ DP+ + FN A + + + +Y F
Sbjct: 145 QLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGA 203
Query: 74 KQLVDVGG 81
VD+GG
Sbjct: 204 ATAVDIGG 211
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
Length = 355
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 23 GIP-FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
GIP F HG+ E GL P+F+ F +A T + +
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMAL 98
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 23 GIP-FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
GIP F HG+ E GL P+F+ F +A T + +
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMAL 98
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 33 HIFEYVGLDPRFNKHFNTAMYNY 55
I E V LDPR H+N + Y
Sbjct: 263 QIIEGVCLDPRIGNHYNNPSFGY 285
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 33 HIFEYVGLDPRFNKHFNTAMYNY 55
I E V LDPR H+N + Y
Sbjct: 263 QIIEGVCLDPRIGNHYNNPSFGY 285
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 14 QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESY 67
+L +I G + +G +E +G DP + F+T M ++ L + I Y
Sbjct: 112 ELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,441,958
Number of Sequences: 62578
Number of extensions: 85325
Number of successful extensions: 249
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 19
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)