Query 042968
Match_columns 81
No_of_seqs 164 out of 1004
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.7 1.4E-16 3E-21 104.0 4.6 77 2-81 32-109 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.4 1.2E-12 2.7E-17 89.7 5.2 78 2-81 109-186 (342)
3 TIGR02716 C20_methyl_CrtF C-20 97.5 0.00033 7.1E-09 47.3 5.5 62 12-81 96-158 (306)
4 PRK06922 hypothetical protein; 91.6 0.31 6.8E-06 36.9 4.0 49 32-81 377-427 (677)
5 PF09959 DUF2193: Uncharacteri 81.7 1.9 4.2E-05 31.1 3.1 71 7-79 68-143 (499)
6 COG4883 Uncharacterized protei 66.4 10 0.00022 27.0 3.5 71 7-79 69-144 (500)
7 KOG2948 Predicted metal-bindin 63.0 6.1 0.00013 27.5 1.9 9 73-81 48-56 (327)
8 TIGR02021 BchM-ChlM magnesium 57.9 28 0.00062 22.1 4.3 50 32-81 14-64 (219)
9 TIGR02261 benz_CoA_red_D benzo 57.6 7.6 0.00017 26.3 1.7 12 70-81 95-106 (262)
10 PF03690 UPF0160: Uncharacteri 56.0 7.2 0.00016 27.2 1.4 11 71-81 42-52 (318)
11 PRK08287 cobalt-precorrin-6Y C 54.8 12 0.00027 23.2 2.2 35 46-81 4-40 (187)
12 PF10357 Kin17_mid: Domain of 51.7 14 0.0003 22.5 1.9 41 6-46 55-99 (127)
13 TIGR03192 benz_CoA_bzdQ benzoy 50.8 16 0.00034 25.3 2.3 11 71-81 124-134 (293)
14 TIGR02259 benz_CoA_red_A benzo 49.8 12 0.00025 27.3 1.6 11 71-81 266-276 (432)
15 PRK14103 trans-aconitate 2-met 47.4 44 0.00096 21.8 4.0 20 61-81 19-38 (255)
16 COG0248 GppA Exopolyphosphatas 46.8 22 0.00049 26.2 2.7 21 60-81 118-138 (492)
17 COG4286 Uncharacterized conser 46.6 13 0.00028 25.8 1.4 11 71-81 46-56 (306)
18 TIGR00241 CoA_E_activ CoA-subs 46.0 15 0.00032 24.1 1.6 12 70-81 89-100 (248)
19 PRK10258 biotin biosynthesis p 39.5 84 0.0018 20.3 4.4 36 45-81 10-51 (251)
20 COG1924 Activator of 2-hydroxy 39.1 28 0.00061 25.1 2.2 12 70-81 227-238 (396)
21 PF06345 Drf_DAD: DRF Autoregu 37.3 21 0.00046 13.4 0.8 12 12-23 3-14 (15)
22 PF14514 TetR_C_9: Transcripti 36.4 37 0.00081 20.3 2.2 32 34-65 15-46 (129)
23 PRK01683 trans-aconitate 2-met 35.9 89 0.0019 20.2 4.1 21 60-81 20-40 (258)
24 PF14881 Tubulin_3: Tubulin do 33.2 1.2E+02 0.0025 19.3 4.2 20 60-79 64-83 (180)
25 PF05952 ComX: Bacillus compet 32.4 26 0.00057 18.3 0.9 36 33-68 4-42 (57)
26 cd01040 globin Globins are hem 31.8 29 0.00063 19.9 1.2 21 30-50 22-43 (140)
27 PRK11031 guanosine pentaphosph 31.1 52 0.0011 24.1 2.6 18 63-81 124-141 (496)
28 TIGR02148 Fibro_Slime fibro-sl 30.5 31 0.00067 19.8 1.1 10 72-81 35-44 (90)
29 PF05148 Methyltransf_8: Hypot 29.4 47 0.001 22.1 1.9 50 31-80 27-80 (219)
30 COG3828 Uncharacterized protei 29.2 29 0.00064 23.0 0.9 28 12-41 70-97 (239)
31 PRK11036 putative S-adenosyl-L 28.7 1.2E+02 0.0025 19.8 3.7 18 62-81 36-53 (255)
32 TIGR02469 CbiT precorrin-6Y C5 28.4 1.1E+02 0.0024 16.9 3.2 20 61-81 9-28 (124)
33 COG1891 Uncharacterized protei 27.6 41 0.00089 22.0 1.4 45 30-79 156-200 (235)
34 PRK07535 methyltetrahydrofolat 27.6 83 0.0018 21.1 2.9 38 41-81 9-46 (261)
35 COG0293 FtsJ 23S rRNA methylas 27.5 1E+02 0.0023 20.2 3.3 40 41-80 14-53 (205)
36 PRK11207 tellurite resistance 27.3 70 0.0015 20.1 2.5 21 60-81 19-39 (197)
37 PRK10854 exopolyphosphatase; P 26.0 63 0.0014 23.8 2.3 11 71-81 136-146 (513)
38 TIGR03286 methan_mark_15 putat 25.3 46 0.00099 24.1 1.4 10 72-81 241-250 (404)
39 PF05185 PRMT5: PRMT5 arginine 25.2 1.3E+02 0.0029 21.9 3.8 40 34-80 152-194 (448)
40 TIGR03871 ABC_peri_MoxJ_2 quin 24.9 1.4E+02 0.003 18.6 3.5 30 40-71 201-230 (232)
41 KOG3101 Esterase D [General fu 23.9 1.1E+02 0.0023 20.8 2.9 39 31-80 184-223 (283)
42 PF13679 Methyltransf_32: Meth 23.7 58 0.0013 19.4 1.5 12 70-81 23-34 (141)
43 PTZ00098 phosphoethanolamine N 23.6 1E+02 0.0023 20.4 2.8 21 60-81 41-61 (263)
44 PTZ00470 glycoside hydrolase f 22.9 75 0.0016 23.8 2.2 27 31-57 287-321 (522)
45 PF02089 Palm_thioest: Palmito 22.5 8.7 0.00019 26.3 -2.5 42 39-81 73-114 (279)
46 PF02718 Herpes_UL31: Herpesvi 22.4 47 0.001 22.6 1.0 23 32-54 28-50 (258)
47 COG2230 Cfa Cyclopropane fatty 22.2 1.4E+02 0.003 20.6 3.2 20 60-80 61-80 (283)
48 PF02541 Ppx-GppA: Ppx/GppA ph 22.1 1E+02 0.0023 20.5 2.6 11 71-81 111-121 (285)
49 PRK04334 hypothetical protein; 21.9 1E+02 0.0022 20.7 2.5 41 40-81 68-117 (251)
50 COG3491 PcbC Isopenicillin N s 21.8 1.7E+02 0.0037 20.7 3.6 41 28-68 119-159 (322)
51 cd01068 sensor_globin Globin d 21.8 1.2E+02 0.0026 17.7 2.7 18 32-49 36-53 (147)
52 PF02993 MCPVI: Minor capsid p 21.7 31 0.00066 23.2 0.0 18 61-80 77-94 (238)
53 TIGR03706 exo_poly_only exopol 21.6 88 0.0019 21.2 2.2 8 74-81 127-134 (300)
54 PRK14896 ksgA 16S ribosomal RN 21.5 1.2E+02 0.0027 19.9 2.9 21 60-81 18-38 (258)
55 TIGR00755 ksgA dimethyladenosi 21.3 1.3E+02 0.0029 19.6 3.0 20 60-80 18-37 (253)
56 KOG0085 G protein subunit Galp 21.2 49 0.0011 22.8 0.9 7 75-81 202-208 (359)
57 PF02353 CMAS: Mycolic acid cy 21.1 95 0.0021 21.0 2.3 21 60-81 51-71 (273)
58 PHA03328 nuclear egress lamina 20.7 57 0.0012 22.9 1.1 22 33-54 64-85 (316)
59 PRK00274 ksgA 16S ribosomal RN 20.5 1.4E+02 0.0029 19.9 2.9 20 60-80 31-50 (272)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.65 E-value=1.4e-16 Score=103.99 Aligned_cols=77 Identities=34% Similarity=0.625 Sum_probs=69.4
Q ss_pred CCccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhH-HHHHHhCCCCCCCCeEEecC
Q 042968 2 HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM-SNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 2 ~~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~-~~~~~~~d~~~~~~~lvDVG 80 (81)
..+..|.+ |.+|.+++|+|+++|+.++|.++|+|++++|+..+.|+.+|+..+.... +.+++.++ |++.++|||||
T Consensus 32 ~~~~~~~~--~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvG 108 (241)
T PF00891_consen 32 ISPELYPA--WFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVG 108 (241)
T ss_dssp TCHHHHHG--GGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET
T ss_pred cCHHHHHH--HHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEecc
Confidence 35677889 9999999999999999999999999999999999999999999998887 88899999 99999999999
Q ss_pred C
Q 042968 81 G 81 (81)
Q Consensus 81 G 81 (81)
|
T Consensus 109 G 109 (241)
T PF00891_consen 109 G 109 (241)
T ss_dssp -
T ss_pred C
Confidence 7
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.35 E-value=1.2e-12 Score=89.67 Aligned_cols=78 Identities=46% Similarity=0.729 Sum_probs=73.5
Q ss_pred CCccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968 2 HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 2 ~~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG 81 (81)
+++..++. |..|.++++.|..+|..+||+.+|+|...++.....|+++|...+....+.+++.|.+|+++.++|||||
T Consensus 109 ~~~v~~~~--w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGg 186 (342)
T KOG3178|consen 109 TSKVIMNT--WQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGG 186 (342)
T ss_pred cccchhhh--HHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCC
Confidence 45677888 9999999999999999999998999999999999999999999999999999999977999999999997
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.48 E-value=0.00033 Score=47.32 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=40.1
Q ss_pred ccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHh-hchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968 12 RSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMY-NYTSLVMSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 12 w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~-~~s~~~~~~~~~~~d~~~~~~~lvDVGG 81 (81)
|.+|.+++| ++++|+..+ ++-...++. ..|.+.|. .......+.+++..+ +++..+|+||||
T Consensus 96 ~~~l~~~~r-~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~ 158 (306)
T TIGR02716 96 YMGLSQAVR-GQKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGG 158 (306)
T ss_pred HHhHHHHhc-CCccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCC
Confidence 888999998 444454322 222233333 34555554 444445677888898 999999999996
No 4
>PRK06922 hypothetical protein; Provisional
Probab=91.55 E-value=0.31 Score=36.95 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=36.2
Q ss_pred CcchhhccCCchHHHHHHHHHhhchhhh--HHHHHHhCCCCCCCCeEEecCC
Q 042968 32 MHIFEYVGLDPRFNKHFNTAMYNYTSLV--MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 32 ~~~f~~~~~~p~~~~~F~~~M~~~s~~~--~~~~~~~~d~~~~~~~lvDVGG 81 (81)
..+|+++..+|+..++|.+.|....... .......++ +....+|+|||+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGC 427 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGA 427 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCC
Confidence 4679999999999999998887754432 222344566 777789999984
No 5
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=81.71 E-value=1.9 Score=31.12 Aligned_cols=71 Identities=27% Similarity=0.355 Sum_probs=49.5
Q ss_pred cccccccchHHHHhcCCCccccccCCc-chhhc-cCCchHHH---HHHHHHhhchhhhHHHHHHhCCCCCCCCeEEec
Q 042968 7 FRNLCRSQLKDTILEGGIPFNRAHGMH-IFEYV-GLDPRFNK---HFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDV 79 (81)
Q Consensus 7 ~~~~~w~~l~~~lr~g~~~f~~~~g~~-~f~~~-~~~p~~~~---~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDV 79 (81)
|.. ...|+++||-...+|-.-+..+ +-|.| ++||.+++ .|.++......+.....++.|.+|=+-..|||.
T Consensus 68 yei--L~~LT~tvrPeDDPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDF 143 (499)
T PF09959_consen 68 YEI--LKSLTDTVRPEDDPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDF 143 (499)
T ss_pred HHH--HHHHhcccCCCCCchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeee
Confidence 445 5678888887677777666654 45665 46887764 455555555666677888999778888899985
No 6
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.35 E-value=10 Score=26.96 Aligned_cols=71 Identities=25% Similarity=0.348 Sum_probs=47.2
Q ss_pred cccccccchHHHHhcCCCccccccCC-cchhhc-cCCchHHHH---HHHHHhhchhhhHHHHHHhCCCCCCCCeEEec
Q 042968 7 FRNLCRSQLKDTILEGGIPFNRAHGM-HIFEYV-GLDPRFNKH---FNTAMYNYTSLVMSNIRESYKGFDNIKQLVDV 79 (81)
Q Consensus 7 ~~~~~w~~l~~~lr~g~~~f~~~~g~-~~f~~~-~~~p~~~~~---F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDV 79 (81)
|.. ...|.+.+|-...+|-.-+.. .+.|.+ +++|++.+. |.++......+.....++.|.+|-+-..|||.
T Consensus 69 yei--l~sltdtvrpeddpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdf 144 (500)
T COG4883 69 YEI--LTSLTDTVRPEDDPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDF 144 (500)
T ss_pred HHH--HHhhhcccCCCCCchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEE
Confidence 444 566778888666677666654 345655 468877654 44554444555667778888668888889985
No 7
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=63.01 E-value=6.1 Score=27.46 Aligned_cols=9 Identities=56% Similarity=0.889 Sum_probs=7.5
Q ss_pred CCeEEecCC
Q 042968 73 IKQLVDVGG 81 (81)
Q Consensus 73 ~~~lvDVGG 81 (81)
...||||||
T Consensus 48 ~DIvvDVGg 56 (327)
T KOG2948|consen 48 CDIVVDVGG 56 (327)
T ss_pred cCEEEecCc
Confidence 449999998
No 8
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=57.91 E-value=28 Score=22.07 Aligned_cols=50 Identities=6% Similarity=-0.047 Sum_probs=31.0
Q ss_pred CcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCC-CCCCCeEEecCC
Q 042968 32 MHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKG-FDNIKQLVDVGG 81 (81)
Q Consensus 32 ~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~-~~~~~~lvDVGG 81 (81)
-..|+.+..+++....+...|..........+++..+. .....+|+|||.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGc 64 (219)
T TIGR02021 14 FQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGC 64 (219)
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 34677777777777777777744333334445544431 344579999983
No 9
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=57.60 E-value=7.6 Score=26.32 Aligned_cols=12 Identities=17% Similarity=0.482 Sum_probs=10.7
Q ss_pred CCCCCeEEecCC
Q 042968 70 FDNIKQLVDVGG 81 (81)
Q Consensus 70 ~~~~~~lvDVGG 81 (81)
+++.++|+||||
T Consensus 95 ~p~~~tIiDIGG 106 (262)
T TIGR02261 95 NPEARAVLDIGA 106 (262)
T ss_pred CCCCCEEEEeCC
Confidence 578899999998
No 10
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=55.97 E-value=7.2 Score=27.18 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=8.7
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
+....||||||
T Consensus 42 ~~cDiVvDVGg 52 (318)
T PF03690_consen 42 EKCDIVVDVGG 52 (318)
T ss_pred ccCCEEEecCC
Confidence 44559999998
No 11
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=54.78 E-value=12 Score=23.17 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHH-HhhchhhhHHHH-HHhCCCCCCCCeEEecCC
Q 042968 46 KHFNTA-MYNYTSLVMSNI-RESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 46 ~~F~~~-M~~~s~~~~~~~-~~~~d~~~~~~~lvDVGG 81 (81)
+.|.++ |...+...+..+ +...+ .....+|+|||.
T Consensus 4 ~~f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~ 40 (187)
T PRK08287 4 ELFLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGA 40 (187)
T ss_pred hhhccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECC
Confidence 345554 555665554444 45666 667779999983
No 12
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=51.71 E-value=14 Score=22.50 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=24.7
Q ss_pred ccccccccchHHHHhc-CCCccccccC--Ccch-hhccCCchHHH
Q 042968 6 VFRNLCRSQLKDTILE-GGIPFNRAHG--MHIF-EYVGLDPRFNK 46 (81)
Q Consensus 6 ~~~~~~w~~l~~~lr~-g~~~f~~~~g--~~~f-~~~~~~p~~~~ 46 (81)
++++-.|..|.+.|+- |++.-..+.. +.+| .|+..+|+...
T Consensus 55 HMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~yID~~pe~l~ 99 (127)
T PF10357_consen 55 HMNATRWTSLTEFVKYLGREGKCKVDETEKGWFISYIDRSPETLA 99 (127)
T ss_dssp -GGGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEEE--SSHHHHH
T ss_pred eecccccchHHHHHHHHhhCCeeEeecCCCceEEEeeCCCHHHHH
Confidence 4455559999999986 6666554543 3455 88888887543
No 13
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=50.81 E-value=16 Score=25.29 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=9.8
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
++.++|+||||
T Consensus 124 p~v~tIIDIGG 134 (293)
T TIGR03192 124 NAVRTILDMGG 134 (293)
T ss_pred CCCCEEEEeCC
Confidence 47899999998
No 14
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=49.79 E-value=12 Score=27.29 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.5
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
++.++|+||||
T Consensus 266 P~vrTIIDIGG 276 (432)
T TIGR02259 266 PGTRTVLDIGG 276 (432)
T ss_pred CCCCEEEEeCC
Confidence 56789999998
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=47.44 E-value=44 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHHhCCCCCCCCeEEecCC
Q 042968 61 SNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 61 ~~~~~~~d~~~~~~~lvDVGG 81 (81)
..+++.++ .....+|+|||+
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGc 38 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGC 38 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcC
Confidence 56777777 667789999984
No 16
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=46.78 E-value=22 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
.-.++..++ +.+...++||||
T Consensus 118 ~lGv~~~~~-~~~~~lv~DIGG 138 (492)
T COG0248 118 YLGVASTLP-RKGDGLVIDIGG 138 (492)
T ss_pred HHHHHhcCC-CCCCEEEEEecC
Confidence 344566777 667789999998
No 17
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=46.60 E-value=13 Score=25.76 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=8.7
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
.....|+||||
T Consensus 46 ~s~div~DVGg 56 (306)
T COG4286 46 DSCDIVYDVGG 56 (306)
T ss_pred hcCCEEEecCc
Confidence 34569999998
No 18
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=46.01 E-value=15 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=10.0
Q ss_pred CCCCCeEEecCC
Q 042968 70 FDNIKQLVDVGG 81 (81)
Q Consensus 70 ~~~~~~lvDVGG 81 (81)
+++.++|+||||
T Consensus 89 ~~~~~~vidiGg 100 (248)
T TIGR00241 89 APEARGVIDIGG 100 (248)
T ss_pred CCCCCEEEEecC
Confidence 467789999998
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=39.50 E-value=84 Score=20.30 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=21.2
Q ss_pred HHHHHHHHhhc------hhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968 45 NKHFNTAMYNY------TSLVMSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 45 ~~~F~~~M~~~------s~~~~~~~~~~~d~~~~~~~lvDVGG 81 (81)
.+.|+++-..+ ....+..+++.++ -....+|+|+|.
T Consensus 10 ~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGc 51 (251)
T PRK10258 10 AAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGC 51 (251)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeC
Confidence 34555554433 2333455666666 455678999993
No 20
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=39.12 E-value=28 Score=25.12 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=10.1
Q ss_pred CCCCCeEEecCC
Q 042968 70 FDNIKQLVDVGG 81 (81)
Q Consensus 70 ~~~~~~lvDVGG 81 (81)
+++..+|+||||
T Consensus 227 ~p~~dtIiDIGG 238 (396)
T COG1924 227 APDVDTVIDIGG 238 (396)
T ss_pred CCCCcEEEEecC
Confidence 467789999998
No 21
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=37.33 E-value=21 Score=13.40 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=8.6
Q ss_pred ccchHHHHhcCC
Q 042968 12 RSQLKDTILEGG 23 (81)
Q Consensus 12 w~~l~~~lr~g~ 23 (81)
...|.|++++|+
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 345788888875
No 22
>PF14514 TetR_C_9: Transcriptional regulator, TetR, C-terminal; PDB: 2QTQ_D 2RHA_A.
Probab=36.40 E-value=37 Score=20.31 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=20.2
Q ss_pred chhhccCCchHHHHHHHHHhhchhhhHHHHHH
Q 042968 34 IFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRE 65 (81)
Q Consensus 34 ~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~ 65 (81)
.|+++.++|+..+.++.-|..-+......+++
T Consensus 15 ~i~~y~~~P~~~rL~~~~l~~~~~~~~~~~~~ 46 (129)
T PF14514_consen 15 VIRYYFDFPYLNRLLNRLLHEAEHERARRLIE 46 (129)
T ss_dssp HHHHHHH-TTHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHhcccHHHHHHHHH
Confidence 57777789999999988777654433333333
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=35.87 E-value=89 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
...+++.++ ..+..+|+|||.
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGc 40 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGC 40 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcc
Confidence 456777777 777789999994
No 24
>PF14881 Tubulin_3: Tubulin domain
Probab=33.16 E-value=1.2e+02 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCCCCCeEEec
Q 042968 60 MSNIRESYKGFDNIKQLVDV 79 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDV 79 (81)
....++.||.+.++..++|+
T Consensus 64 lR~f~EECD~lQGfQ~~~d~ 83 (180)
T PF14881_consen 64 LRFFLEECDSLQGFQVLTDV 83 (180)
T ss_pred HHHHHHHcccccceEEEecC
Confidence 46678999867889999987
No 25
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=32.36 E-value=26 Score=18.31 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.5
Q ss_pred cchhhccCCchHHHHHHHHHhhc---hhhhHHHHHHhCC
Q 042968 33 HIFEYVGLDPRFNKHFNTAMYNY---TSLVMSNIRESYK 68 (81)
Q Consensus 33 ~~f~~~~~~p~~~~~F~~~M~~~---s~~~~~~~~~~~d 68 (81)
++-.||-+||+..+...++=++. +.....++++.|.
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asLIGv~~~e~~aIi~~F~ 42 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASLIGVDKDEQKAIIDAFK 42 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeEecCCHHHHHHHHHHHc
Confidence 34578999999988887776663 5556788888885
No 26
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=31.85 E-value=29 Score=19.89 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=16.0
Q ss_pred cCCcch-hhccCCchHHHHHHH
Q 042968 30 HGMHIF-EYVGLDPRFNKHFNT 50 (81)
Q Consensus 30 ~g~~~f-~~~~~~p~~~~~F~~ 50 (81)
.|..+| .+++++|+....|..
T Consensus 22 ~g~~~f~~lf~~~P~~~~~F~~ 43 (140)
T cd01040 22 IGLEFYERLFKAHPETRALFSR 43 (140)
T ss_pred HHHHHHHHHHHHChhHHHHhHH
Confidence 456666 456789999999987
No 27
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=31.11 E-value=52 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHhCCCCCCCCeEEecCC
Q 042968 63 IRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 63 ~~~~~d~~~~~~~lvDVGG 81 (81)
+....+ ..+...|+||||
T Consensus 124 v~~~l~-~~~~~lviDIGG 141 (496)
T PRK11031 124 VAHTTG-GADQRLVVDIGG 141 (496)
T ss_pred hhhccC-CCCCEEEEEecC
Confidence 334444 444458999998
No 28
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=30.47 E-value=31 Score=19.76 Aligned_cols=10 Identities=60% Similarity=0.959 Sum_probs=7.6
Q ss_pred CCCeEEecCC
Q 042968 72 NIKQLVDVGG 81 (81)
Q Consensus 72 ~~~~lvDVGG 81 (81)
+-+.++|+||
T Consensus 35 n~kLv~DlGG 44 (90)
T TIGR02148 35 NNKLVVDIGG 44 (90)
T ss_pred CCEEEEEccC
Confidence 4467888887
No 29
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=29.45 E-value=47 Score=22.11 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=28.5
Q ss_pred CCcchhhccCCchHHHHHHHHHhhc----hhhhHHHHHHhCCCCCCCCeEEecC
Q 042968 31 GMHIFEYVGLDPRFNKHFNTAMYNY----TSLVMSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 31 g~~~f~~~~~~p~~~~~F~~~M~~~----s~~~~~~~~~~~d~~~~~~~lvDVG 80 (81)
|...++.+.++|+.-..++.+-+.. -.--.+.+++.+..-+...+|.|.|
T Consensus 27 s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~G 80 (219)
T PF05148_consen 27 SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFG 80 (219)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECC
Confidence 3456788889998766666654443 2222466666654123446899988
No 30
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.15 E-value=29 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=17.2
Q ss_pred ccchHHHHhcCCCccccccCCcchhhccCC
Q 042968 12 RSQLKDTILEGGIPFNRAHGMHIFEYVGLD 41 (81)
Q Consensus 12 w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~ 41 (81)
|.+|.++|++|.. |.--||. ++|++..+
T Consensus 70 ~q~i~aaiesG~G-~aG~Hg~-~~D~fr~~ 97 (239)
T COG3828 70 VQNITAAIESGVG-FAGFHGG-MGDAFRNS 97 (239)
T ss_pred HHHHHHHHHcCCc-eeeeccc-cccccCCC
Confidence 7889999998864 4444442 44444433
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=28.70 E-value=1.2e+02 Score=19.84 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=11.1
Q ss_pred HHHHhCCCCCCCCeEEecCC
Q 042968 62 NIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 62 ~~~~~~d~~~~~~~lvDVGG 81 (81)
.+++.++ +.-.+|+|||+
T Consensus 36 ~~l~~l~--~~~~~vLDiGc 53 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGG 53 (255)
T ss_pred HHHHhcC--CCCCEEEEeCC
Confidence 3444444 34468999995
No 32
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=28.36 E-value=1.1e+02 Score=16.87 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.2
Q ss_pred HHHHHhCCCCCCCCeEEecCC
Q 042968 61 SNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 61 ~~~~~~~d~~~~~~~lvDVGG 81 (81)
..+++.++ .....+|+|+|.
T Consensus 9 ~~~~~~~~-~~~~~~vldlG~ 28 (124)
T TIGR02469 9 ALTLSKLR-LRPGDVLWDIGA 28 (124)
T ss_pred HHHHHHcC-CCCCCEEEEeCC
Confidence 33555665 555678999983
No 33
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.61 E-value=41 Score=22.04 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=28.1
Q ss_pred cCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEec
Q 042968 30 HGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDV 79 (81)
Q Consensus 30 ~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDV 79 (81)
.|+++|+++ +.+..+.|.+.-+...- .-+++.+.. |.....|-+|
T Consensus 156 DGkslFdfm--~~e~l~eFvd~Ah~hGL--~~AlAGs~~-~ehlp~l~ei 200 (235)
T COG1891 156 DGKSLFDFM--DEEELEEFVDLAHEHGL--EVALAGSLK-FEHLPILKEI 200 (235)
T ss_pred cchhHHhhh--cHHHHHHHHHHHHHcch--HHHhccccc-cccchHHHHh
Confidence 478899988 45667788777655543 245666666 6555444333
No 34
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.59 E-value=83 Score=21.13 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968 41 DPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 41 ~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG 81 (81)
||. .+.|.+++.......+...+... ...-..++|||+
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~~--~~~GAdiIDVg~ 46 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALKQ--AEAGADYLDVNA 46 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECC
Confidence 566 67788877776543322222222 233467899986
No 35
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.52 E-value=1e+02 Score=20.18 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecC
Q 042968 41 DPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 41 ~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVG 80 (81)
||-....=.++..+.+..-..+|.+.|.-|++...|||+|
T Consensus 14 D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLG 53 (205)
T COG0293 14 DPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLG 53 (205)
T ss_pred CHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcC
Confidence 3333333334444455555677788884277888999998
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=27.28 E-value=70 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
.+.+++.++ ...-.+|+|+|.
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGc 39 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGC 39 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECC
Confidence 366777776 555679999994
No 37
>PRK10854 exopolyphosphatase; Provisional
Probab=25.95 E-value=63 Score=23.77 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=8.5
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
.+...||||||
T Consensus 136 ~~~~lvvDIGG 146 (513)
T PRK10854 136 KGRKLVIDIGG 146 (513)
T ss_pred CCCeEEEEeCC
Confidence 34468999998
No 38
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=25.29 E-value=46 Score=24.12 Aligned_cols=10 Identities=30% Similarity=0.777 Sum_probs=8.7
Q ss_pred CCCeEEecCC
Q 042968 72 NIKQLVDVGG 81 (81)
Q Consensus 72 ~~~~lvDVGG 81 (81)
+.++|+||||
T Consensus 241 ~v~TIIDIGG 250 (404)
T TIGR03286 241 GPATVIDIGG 250 (404)
T ss_pred CCcEEEEeCC
Confidence 4689999998
No 39
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=25.22 E-value=1.3e+02 Score=21.88 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=24.7
Q ss_pred chhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCC--C-CCCCeEEecC
Q 042968 34 IFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKG--F-DNIKQLVDVG 80 (81)
Q Consensus 34 ~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~--~-~~~~~lvDVG 80 (81)
.|+-+++||.+-+.+.+|+.. ++.+.... - .+..+|+|||
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVG 194 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVG 194 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeC
Confidence 488889999988888888632 33333220 1 1357899999
No 40
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=24.95 E-value=1.4e+02 Score=18.65 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHhhchhhhHHHHHHhCCCCC
Q 042968 40 LDPRFNKHFNTAMYNYTSLVMSNIRESYKGFD 71 (81)
Q Consensus 40 ~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~ 71 (81)
.+++..+.|++++..... ....|.+.|. ++
T Consensus 201 ~~~~l~~~~n~~l~~~~~-~~~~i~~kyg-~~ 230 (232)
T TIGR03871 201 GDKAWKDELNAVLDRRQA-EIDAILREYG-VP 230 (232)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHcC-CC
Confidence 578899999999988765 5688888886 54
No 41
>KOG3101 consensus Esterase D [General function prediction only]
Probab=23.88 E-value=1.1e+02 Score=20.85 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCcch-hhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecC
Q 042968 31 GMHIF-EYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 31 g~~~f-~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVG 80 (81)
|+..| .|+..|+...+.++ +..++..|. =.+...++|.|
T Consensus 184 GqKAf~gYLG~~ka~W~~yD----------at~lik~y~-~~~~~ilIdqG 223 (283)
T KOG3101|consen 184 GQKAFTGYLGDNKAQWEAYD----------ATHLIKNYR-GVGDDILIDQG 223 (283)
T ss_pred hHHHhhcccCCChHHHhhcc----------hHHHHHhcC-CCCccEEEecC
Confidence 44445 56767666554433 456788887 45566899987
No 42
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=23.70 E-value=58 Score=19.36 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.5
Q ss_pred CCCCCeEEecCC
Q 042968 70 FDNIKQLVDVGG 81 (81)
Q Consensus 70 ~~~~~~lvDVGG 81 (81)
-.+..+|||+|+
T Consensus 23 ~~~~~~vvD~Gs 34 (141)
T PF13679_consen 23 SKRCITVVDLGS 34 (141)
T ss_pred cCCCCEEEEeCC
Confidence 366789999995
No 43
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=23.62 E-value=1e+02 Score=20.39 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
...+++.++ ...-.+|+|||.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGc 61 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGS 61 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcC
Confidence 456777787 788889999983
No 44
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=22.86 E-value=75 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCcchhhcc--------CCchHHHHHHHHHhhchh
Q 042968 31 GMHIFEYVG--------LDPRFNKHFNTAMYNYTS 57 (81)
Q Consensus 31 g~~~f~~~~--------~~p~~~~~F~~~M~~~s~ 57 (81)
+.++|||+- .++...+.|..+|.+...
T Consensus 287 ~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i~~ 321 (522)
T PTZ00470 287 GDSYYEYLLKQWLYTNGREERYRRLFVESAKGIIE 321 (522)
T ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 368899873 578889999999988744
No 45
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=22.47 E-value=8.7 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=23.2
Q ss_pred cCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968 39 GLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 39 ~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG 81 (81)
+++|+...-|+.---+...+..+++++.|+ -..+.++|=+||
T Consensus 73 ~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~-~~~V~nlISlgg 114 (279)
T PF02089_consen 73 ANDPELANGFNAIGFSQGGLFLRAYVQRCN-DPPVHNLISLGG 114 (279)
T ss_dssp HH-GGGTT-EEEEEETCHHHHHHHHHHH-T-SS-EEEEEEES-
T ss_pred hhChhhhcceeeeeeccccHHHHHHHHHCC-CCCceeEEEecC
Confidence 345554443333323334556788899998 678888888876
No 46
>PF02718 Herpes_UL31: Herpesvirus UL31-like protein; InterPro: IPR021152 This is a family of Herpesvirus proteins, belong to the UL31 family, which including UL31, UL53, and the product of ORF69 in some strains. The proteins in this family have no known function.
Probab=22.41 E-value=47 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.6
Q ss_pred CcchhhccCCchHHHHHHHHHhh
Q 042968 32 MHIFEYVGLDPRFNKHFNTAMYN 54 (81)
Q Consensus 32 ~~~f~~~~~~p~~~~~F~~~M~~ 54 (81)
..+|++++++|+....|.+-|..
T Consensus 28 ~~fF~~~~~~pele~~~LR~M~~ 50 (258)
T PF02718_consen 28 RDFFDVISESPELELDFLREMKV 50 (258)
T ss_pred HHHHHHHHhCchHHHHHHHhccC
Confidence 35799999999999999999976
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=1.4e+02 Score=20.62 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.5
Q ss_pred HHHHHHhCCCCCCCCeEEecC
Q 042968 60 MSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVG 80 (81)
...+++... +.+-.+|+|||
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiG 80 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIG 80 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeC
Confidence 577788888 99999999999
No 48
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=22.12 E-value=1e+02 Score=20.46 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.8
Q ss_pred CCCCeEEecCC
Q 042968 71 DNIKQLVDVGG 81 (81)
Q Consensus 71 ~~~~~lvDVGG 81 (81)
.+...++||||
T Consensus 111 ~~~~lviDIGG 121 (285)
T PF02541_consen 111 DKNGLVIDIGG 121 (285)
T ss_dssp TSSEEEEEEES
T ss_pred cCCEEEEEECC
Confidence 45568999998
No 49
>PRK04334 hypothetical protein; Provisional
Probab=21.87 E-value=1e+02 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCchHHHHHHHH--------HhhchhhhHHHHHHhCCCCCCC-CeEEecCC
Q 042968 40 LDPRFNKHFNTA--------MYNYTSLVMSNIRESYKGFDNI-KQLVDVGG 81 (81)
Q Consensus 40 ~~p~~~~~F~~~--------M~~~s~~~~~~~~~~~d~~~~~-~~lvDVGG 81 (81)
..|+..++..++ |++......+.+++.+. =.+. ..+||.||
T Consensus 68 ~~~~i~r~M~~A~~~~~vgPMAAVAG~iaD~v~~~L~-~~G~~~~lV~~GG 117 (251)
T PRK04334 68 DAPEVARRMAAAARPAGVGPMAAVAGAIAQEVVEALV-EAGSKRAIVENGG 117 (251)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-HCCCCeEEEECCC
Confidence 456666666665 55555555666666653 2333 47899998
No 50
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=21.84 E-value=1.7e+02 Score=20.66 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=26.4
Q ss_pred cccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCC
Q 042968 28 RAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYK 68 (81)
Q Consensus 28 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d 68 (81)
.-+|...|..+...-.....|.+.|..++...+..++..++
T Consensus 119 ~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~Ld 159 (322)
T COG3491 119 PLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLD 159 (322)
T ss_pred CcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34466666633333344566777777777777888888886
No 51
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=21.80 E-value=1.2e+02 Score=17.74 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=15.5
Q ss_pred CcchhhccCCchHHHHHH
Q 042968 32 MHIFEYVGLDPRFNKHFN 49 (81)
Q Consensus 32 ~~~f~~~~~~p~~~~~F~ 49 (81)
..+|+++.++|+.+..|.
T Consensus 36 ~~FY~~l~~~p~~~~~~~ 53 (147)
T cd01068 36 DRFYDHLRRTPETAAFLG 53 (147)
T ss_pred HHHHHHHhcChHHHHHhC
Confidence 468999999999998885
No 52
>PF02993 MCPVI: Minor capsid protein VI; InterPro: IPR004243 This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. Residues at the C-terminal end of the protein may act as a protease cofactor leading to activation of the adenovirus proteinase [].; GO: 0019028 viral capsid; PDB: 1AVP_B.
Probab=21.67 E-value=31 Score=23.24 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCCCeEEecC
Q 042968 61 SNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 61 ~~~~~~~d~~~~~~~lvDVG 80 (81)
..+++... +++.-+||||
T Consensus 77 ~kVv~g~~--~gi~g~vDIg 94 (238)
T PF02993_consen 77 EKVVEGAG--SGINGLVDIG 94 (238)
T ss_dssp --------------------
T ss_pred HHHHHHHh--hhhhHHHHHH
Confidence 34444443 5566778876
No 53
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=21.57 E-value=88 Score=21.17 Aligned_cols=8 Identities=50% Similarity=0.979 Sum_probs=7.2
Q ss_pred CeEEecCC
Q 042968 74 KQLVDVGG 81 (81)
Q Consensus 74 ~~lvDVGG 81 (81)
..++||||
T Consensus 127 ~~v~DiGG 134 (300)
T TIGR03706 127 GLVVDIGG 134 (300)
T ss_pred cEEEEecC
Confidence 59999998
No 54
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=21.46 E-value=1.2e+02 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
...+++..+ .....+|+|||.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~ 38 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGP 38 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeC
Confidence 566677776 666688999983
No 55
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.25 E-value=1.3e+02 Score=19.61 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCCCCCeEEecC
Q 042968 60 MSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVG 80 (81)
...+++..+ ..+..+|+|||
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG 37 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIG 37 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeC
Confidence 466777777 77778999998
No 56
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=21.21 E-value=49 Score=22.77 Aligned_cols=7 Identities=71% Similarity=1.379 Sum_probs=6.2
Q ss_pred eEEecCC
Q 042968 75 QLVDVGG 81 (81)
Q Consensus 75 ~lvDVGG 81 (81)
++|||||
T Consensus 202 rmvDvGG 208 (359)
T KOG0085|consen 202 RMVDVGG 208 (359)
T ss_pred eeeecCC
Confidence 6899998
No 57
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.08 E-value=95 Score=20.96 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=14.1
Q ss_pred HHHHHHhCCCCCCCCeEEecCC
Q 042968 60 MSNIRESYKGFDNIKQLVDVGG 81 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVGG 81 (81)
...+++..+ ..+-.+|+|||.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGc 71 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGC 71 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-
T ss_pred HHHHHHHhC-CCCCCEEEEeCC
Confidence 466778887 888889999994
No 58
>PHA03328 nuclear egress lamina protein UL31; Provisional
Probab=20.71 E-value=57 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.9
Q ss_pred cchhhccCCchHHHHHHHHHhh
Q 042968 33 HIFEYVGLDPRFNKHFNTAMYN 54 (81)
Q Consensus 33 ~~f~~~~~~p~~~~~F~~~M~~ 54 (81)
.+|++++++|+....|.+-|..
T Consensus 64 ~fF~~ia~~Pele~~~LReM~~ 85 (316)
T PHA03328 64 AYFAYLASSPSDELALVRSLSV 85 (316)
T ss_pred HHHHHHhcCcHHHHHHHHhccC
Confidence 4789999999999999999976
No 59
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=20.50 E-value=1.4e+02 Score=19.94 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHHhCCCCCCCCeEEecC
Q 042968 60 MSNIRESYKGFDNIKQLVDVG 80 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~~lvDVG 80 (81)
+..+++..+ .....+|+|||
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG 50 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIG 50 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeC
Confidence 355666666 66667899998
Done!