BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042970
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 230/507 (45%), Gaps = 72/507 (14%)
Query: 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAAR-LKTVLARAVQSGLQIRLV 67
H++++P+ QGH+ P+F +A+LL +T V T N R LK+ +A
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 68 EIQ---FPWQEAG-----LPQGCE----NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ 115
I P + G +P C+ NF + P +L ++ +S ++
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNF-LKPYCELLTRLNHSTNV------------ 116
Query: 116 SPKPCCIISDMGYPWTVDTAAKFNVPRIV-FHGFSCFCLFCLHI----------LRDSKV 164
P C++SD +T+ A +F +P ++ F +C L +H +D
Sbjct: 117 -PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESY 175
Query: 165 HENVTSDSEYFKVPG-----LPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIIN 219
N +++ +PG L D ++F + P+D M + ++ K I++N
Sbjct: 176 LTNGCLETKVDWIPGLKNFRLKDIVDFIRTT---NPNDIMLEFFIEVADRVNKDTTILLN 232
Query: 220 TVEELESAYFREYKNAKQGKVWCIGPVSLCNKES-----IDKVERGNKAAIDVPECLTWL 274
T ELES + ++ IGP+ K++ +D ++ N D ECL WL
Sbjct: 233 TFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLD-SNLWKEDT-ECLDWL 289
Query: 275 DSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKXXXXXXXXXXXXX 334
+S++P SVVYV GS +T QL+E GL KK F+W+ R
Sbjct: 290 ESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP--DLVIGGSVIFSSEF 347
Query: 335 XXRIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCN 394
I RG LI W PQ +L+HP++GGFLTHCGWNS+ E I AGV ML WP F DQ +
Sbjct: 348 TNEIADRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 395 EKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKE 454
+ I IG+ + VK++++ IN ++ G++ +++A E
Sbjct: 407 CRFICNEWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAME 451
Query: 455 FEELAKRALEEGGSSYNNIQLFFQDIM 481
++ A+ GG SY N+ +D++
Sbjct: 452 LKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 227/499 (45%), Gaps = 66/499 (13%)
Query: 4 EASEFHILLLPFLAQGHLIPMFDMA-RLLANHRAIVTIVTT----PVNAARLKTVLARAV 58
E+ H+ ++P GHLIP+ + A RL+ H VT V P A R TVL
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQR--TVLDSLP 60
Query: 59 QSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKF----FNSHSMLQLPFENLFSE 114
S + L + D+ S + S+ S+ L+ F++ F E
Sbjct: 61 SSISSVFLPPVDL-------------TDLSSSTRIESRISLTVTRSNPELRKVFDS-FVE 106
Query: 115 QSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCL-FCLHILRDSKVHENVTSDSE 173
P ++ D+ D A +F+VP +F+ + L F LH+ K+ E V+ +
Sbjct: 107 GGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHL---PKLDETVSCEFR 163
Query: 174 YFKVP-GLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTF----GIIINTVEELESAY 228
P LP + + P+ D KD + L + K + GI++NT ELE
Sbjct: 164 ELTEPLMLPGCVPVAGKDF-LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNA 222
Query: 229 FREYKNAKQGK--VWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVC 286
+ + K V+ +GP+ K+ + E ECL WLD+Q SV+YV
Sbjct: 223 IKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEES--------ECLKWLDNQPLGSVLYVS 274
Query: 287 LGSICNLTSSQLIELGLGLEASKKPFIWVTR----VGNKXXXXXXXXXXXXX------XX 336
GS LT QL EL LGL S++ F+WV R + N
Sbjct: 275 FGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE 334
Query: 337 RIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEK 396
R K RG +I W PQ +L+HP+ GGFLTHCGWNS+LE + +G+ ++ WPL+ +Q N
Sbjct: 335 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Query: 397 LIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456
L+ E +R + + G++ LV++++V + LM +GEE R + KE +
Sbjct: 395 LLSEDIRAALRP------RAGDDG----LVRREEVARVVKGLM-EGEEGKGVRNKMKELK 443
Query: 457 ELAKRALEEGGSSYNNIQL 475
E A R L++ G+S + L
Sbjct: 444 EAACRVLKDDGTSTKALSL 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 226/490 (46%), Gaps = 59/490 (12%)
Query: 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT-------TPVNAARLKTVLARAVQSGL 62
++ +P GHL + A+LL NH + I P + +K+VLA Q L
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQL 71
Query: 63 QIRLVEIQFPWQEAGLPQGCENF------DMLPSIDLASKFFNSHSMLQLPFENLFSEQS 116
I L E++ P QE L + E + ++P + K S+ ++ L +
Sbjct: 72 -IDLPEVEPPPQE--LLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF----- 123
Query: 117 PKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHE---NVTSDSE 173
C+ +D +F +P +F + L + L++ ++ E + D +
Sbjct: 124 ----CVS-------MIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 174 YFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREY- 232
+PG+ +Q+ + F D ++ + T GII+NT +LE +
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALY 232
Query: 233 -KNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSI- 290
+ K ++ +GP+ + K+++ I L WLD Q SVV++C GS+
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMG 287
Query: 291 CNLTSSQLIELGLGLEASKKPFIWVTRVGNKXXXXXXXXXXXXXXXRIKGRGLLIRGWVP 350
+ SQ+ E+ LGL+ S F+W K ++G+G+ I GW P
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM-----ELEGKGM-ICGWAP 341
Query: 351 QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGV 410
QV +L+H A+GGF++HCGWNS LE + GV +LTWP++ +Q N +V+ GV +G+
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVGLGL 399
Query: 411 EVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470
V + G + +V +++E + LMD + + K+ +E +E+++ A+ +GGSS
Sbjct: 400 RVDYRKGSD-----VVAAEEIEKGLKDLMD---KDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 471 NNIQLFFQDI 480
++ DI
Sbjct: 452 ISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 226/490 (46%), Gaps = 59/490 (12%)
Query: 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT-------TPVNAARLKTVLARAVQSGL 62
++ +P GHL + A+LL NH + I P + +K+VLA Q L
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQL 71
Query: 63 QIRLVEIQFPWQEAGLPQGCENF------DMLPSIDLASKFFNSHSMLQLPFENLFSEQS 116
I L E++ P QE L + E + ++P + K S+ ++ L +
Sbjct: 72 -IDLPEVEPPPQE--LLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF----- 123
Query: 117 PKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHE---NVTSDSE 173
C+ +D +F +P +F + L + L++ ++ E + D +
Sbjct: 124 ----CVS-------MIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 174 YFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREY- 232
+PG+ +Q+ + F D ++ + T GII+NT +LE +
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALY 232
Query: 233 -KNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSI- 290
+ K ++ +GP+ + K+++ I L WLD Q SVV++C GS+
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMG 287
Query: 291 CNLTSSQLIELGLGLEASKKPFIWVTRVGNKXXXXXXXXXXXXXXXRIKGRGLLIRGWVP 350
+ SQ+ E+ LGL+ S F+W K ++G+G+ I GW P
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM-----ELEGKGM-ICGWAP 341
Query: 351 QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGV 410
QV +L+H A+GGF++HCGWNS LE + GV +LTWP++ +Q N +V+ GV +G+
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVGLGL 399
Query: 411 EVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470
V + G + +V +++E + LMD + + K+ +E +E+++ A+ +GGSS
Sbjct: 400 RVDYRKGSD-----VVAAEEIEKGLKDLMD---KDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 471 NNIQLFFQDI 480
++ DI
Sbjct: 452 ISVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 32/273 (11%)
Query: 212 KTFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECL 271
K + IN+ EEL+ + + K +K IGP +L + G CL
Sbjct: 213 KATAVFINSFEELDDSLTNDLK-SKLKTYLNIGPFNLITPPPVVPNTTG---------CL 262
Query: 272 TWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKXXXXXXXXXX 331
WL ++P+SVVY+ G++ ++++ L LEAS+ PFIW R
Sbjct: 263 QWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLP 316
Query: 332 XXXXXRIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQ 391
+ +G G+++ W PQ +L+H AVG F+THCGWNS E ++ GV ++ P FGDQ
Sbjct: 317 EGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQ 375
Query: 392 FCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKR 451
N +++ +VL IGV + + GV K + IL + ++ R+
Sbjct: 376 RLNGRMVEDVLEIGVRI------------EGGVFTKSGLMSCFDQILSQEKGKK--LREN 421
Query: 452 AKEFEELAKRALEEGGSSYNNIQLFFQDIMQQP 484
+ E A RA+ GSS N + D++ +P
Sbjct: 422 LRALRETADRAVGPKGSSTENF-ITLVDLVSKP 453
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 196/485 (40%), Gaps = 62/485 (12%)
Query: 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLV 67
H+ +L F H P+ + + +A VT T+ +R+ + I+
Sbjct: 14 LHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTN-DTLFSRSNEFLPNIKYY 72
Query: 68 EIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHSMLQLPFENLF----SEQSPKPCCII 123
+ GLP+G + S + F +Q F+++ +E C++
Sbjct: 73 NVH-----DGLPKG-----YVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLV 122
Query: 124 SDMGYPWTVDTAAKFN---VPRIVFHGFSCFCLFCLHILRDSKVHENVTSDSEYFKVPGL 180
+D + + D A + + VP S ++R+ + V +PG
Sbjct: 123 TDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGF 182
Query: 181 PDQIEFTKVQLPIFPSDDMKDIN-------EQMLAADKKTFGIIINTVEELESAYFREYK 233
P+ ++ P +KDI+ +M + + IN+ + E
Sbjct: 183 PE------LKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL- 235
Query: 234 NAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNL 293
N+K + +GP +L + E G CL WLD + SSVVY+ GS+
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRKVSDEHG---------CLEWLDQHENSSVVYISFGSVVTP 286
Query: 294 TSSQLIELGLGLEASKKPFIWVTRVGNKXXXXXXXXXXXXXXXRIKGRGLLIRGWVPQVM 353
+L L LE PFIW R K R K +G ++ W PQV
Sbjct: 287 PPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLE------RTKTKGKIV-AWAPQVE 339
Query: 354 ILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVP 413
IL H +VG FLTH GWNS LE I GV M++ P FGDQ N L VL IGV V
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV----- 394
Query: 414 LKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNI 473
GVL K+ ++ A+ + M E+ + R++ + +E A +A+E+ G+S +
Sbjct: 395 -------DNGVLT-KESIKKALELTMSS-EKGGIMRQKIVKLKESAFKAVEQNGTSAMDF 445
Query: 474 QLFFQ 478
Q
Sbjct: 446 TTLIQ 450
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 345 IRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRI 404
+ WVPQ+ IL + F+TH G S EG++ M+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML------ 338
Query: 405 GVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKR 461
G+ V K EE L++ ETA+ ++ D R +RR +A+ +E R
Sbjct: 339 ---QGLGVARKLATEEATADLLR----ETALALVDDPEVARRLRRIQAEMAQEGGTR 388
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 348 WVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCN 394
W+PQ +L HP F+TH G N E I G+ + PLF DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 345 IRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEV 401
+ WVPQ+ IL+ F+TH G S++E +S V M+ P +Q N + IVE+
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 29/134 (21%)
Query: 266 DVPECLTWLDSQQPSSVVYVCLGSICNLTSSQL---IELGLGLEA----SKKPFIWVTRV 318
D+P L+ D+ +P +VY+ LG+ T L I+ GL+A + P + V+ +
Sbjct: 230 DLPAWLSSRDTARP--LVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGL 287
Query: 319 GNKXXXXXXXXXXXXXXXRIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISA 378
G + + WVPQ +L H V + H G ++L + A
Sbjct: 288 GEVPAN------------------VRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGA 327
Query: 379 GVQMLTWPLFGDQF 392
GV L++P GD F
Sbjct: 328 GVPQLSFPWAGDSF 341
>pdb|3L49|A Chain A, Crystal Structure Of Abc Sugar Transporter Subunit From
Rhodobacter Sphaeroides 2.4.1
pdb|3L49|B Chain B, Crystal Structure Of Abc Sugar Transporter Subunit From
Rhodobacter Sphaeroides 2.4.1
pdb|3L49|C Chain C, Crystal Structure Of Abc Sugar Transporter Subunit From
Rhodobacter Sphaeroides 2.4.1
pdb|3L49|D Chain D, Crystal Structure Of Abc Sugar Transporter Subunit From
Rhodobacter Sphaeroides 2.4.1
Length = 291
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 123 ISDMGYP-WTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSDSEYFKVPGLP 181
I+D G P +TVDTA + + +S L ++ D NV + ++ VP
Sbjct: 82 INDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCK 141
Query: 182 DQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVW 241
+ + K L FP D+K I ++ T + V ++ + Y E G +W
Sbjct: 142 IRYDQMKYVLEAFP--DVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNE---GDVGAIW 196
Query: 242 C 242
Sbjct: 197 A 197
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 436 NILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470
N+ DG ++ +R KR +FE + K A+E G SY
Sbjct: 33 NLTTHDGFKQALREKRYGDFEAIIKLAVENGTESY 67
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 436 NILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470
N+ DG ++ +R KR +FE + K A+E G SY
Sbjct: 33 NLTTHDGFKQALREKRYGDFEAIIKLAVENGTESY 67
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 436 NILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470
N+ DG ++ +R KR +FE + K A+E G SY
Sbjct: 33 NLTTHDGFKQALREKRYGDFEAIIKLAVENGTESY 67
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 38 VTIVTTPVNAA-RLKTVLARAVQSGLQIRLVEIQFPWQEAGLP 79
VT+ TTP+NA RL+ +L R L + L+ + +P ++A +P
Sbjct: 198 VTVTTTPLNAGPRLRVLLGRPSHEKLLV-LLPVGYPSRDATVP 239
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAV 58
HIL GH+ P + LA +T VTTP+ A +K A V
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVV 55
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 212 KTFGI-IINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVE---RGNKAAIDV 267
TFG + N + L+S Y+ A G+ C G S C K DK+ + N +D
Sbjct: 226 NTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDC 285
Query: 268 PECLTWLDS----QQPSSVVYVCLGSICNLTSSQLI 299
+CL + + + + CL CN S +
Sbjct: 286 EKCLPFFNDRPWRRATAESASECLPCDCNGRSQECY 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,602,343
Number of Sequences: 62578
Number of extensions: 549341
Number of successful extensions: 1406
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1371
Number of HSP's gapped (non-prelim): 24
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)