Query 042970
Match_columns 489
No_of_seqs 149 out of 1345
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 2E-73 4.3E-78 567.0 48.8 482 3-484 4-488 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-69 2.5E-74 541.4 46.3 456 6-485 8-474 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 4.6E-69 1E-73 542.1 48.7 468 7-483 5-481 (482)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.8E-68 1.7E-72 524.7 45.1 436 1-482 1-450 (451)
5 PLN02992 coniferyl-alcohol glu 100.0 8.8E-68 1.9E-72 524.4 45.1 436 7-482 5-469 (481)
6 PLN02208 glycosyltransferase f 100.0 1.2E-67 2.5E-72 522.1 44.5 435 5-483 2-440 (442)
7 PLN00164 glucosyltransferase; 100.0 2.9E-67 6.4E-72 526.0 46.7 451 5-487 1-478 (480)
8 PLN02555 limonoid glucosyltran 100.0 2.2E-67 4.8E-72 523.0 45.2 455 1-483 1-470 (480)
9 PLN02764 glycosyltransferase f 100.0 3.9E-67 8.5E-72 515.1 44.9 435 6-484 4-447 (453)
10 PLN02173 UDP-glucosyl transfer 100.0 6.3E-67 1.4E-71 515.6 44.0 431 5-481 3-447 (449)
11 PLN03015 UDP-glucosyl transfer 100.0 8.9E-67 1.9E-71 514.1 44.8 440 5-480 1-466 (470)
12 PLN02210 UDP-glucosyl transfer 100.0 1.6E-66 3.6E-71 517.4 44.6 442 1-481 1-454 (456)
13 PLN00414 glycosyltransferase f 100.0 1.5E-66 3.3E-71 514.8 43.9 436 5-484 2-442 (446)
14 PLN02670 transferase, transfer 100.0 1.7E-66 3.8E-71 514.8 44.0 457 4-486 3-469 (472)
15 PLN02207 UDP-glycosyltransfera 100.0 4.9E-66 1.1E-70 511.1 45.0 453 5-485 1-468 (468)
16 PLN02448 UDP-glycosyltransfera 100.0 5.7E-65 1.2E-69 509.9 45.9 442 3-484 6-459 (459)
17 PLN03004 UDP-glycosyltransfera 100.0 2E-65 4.3E-70 505.2 41.3 434 5-471 1-450 (451)
18 PLN02562 UDP-glycosyltransfera 100.0 6E-65 1.3E-69 505.7 43.9 426 4-480 3-447 (448)
19 PLN02554 UDP-glycosyltransfera 100.0 1.8E-64 3.8E-69 508.1 44.1 450 7-483 2-479 (481)
20 PLN02152 indole-3-acetate beta 100.0 1.8E-64 4E-69 498.9 42.8 435 5-480 1-454 (455)
21 PLN02167 UDP-glycosyltransfera 100.0 1E-63 2.2E-68 501.9 44.2 457 5-483 1-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1E-47 2.3E-52 387.6 29.4 406 7-484 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-48 2.4E-53 401.9 3.9 380 9-462 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2E-44 4.4E-49 358.9 31.0 377 13-480 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.3E-43 2.9E-48 354.7 21.6 383 8-478 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 6.9E-42 1.5E-46 336.3 21.7 388 7-485 1-403 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.4E-41 5.2E-46 347.7 11.9 398 7-460 5-437 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.2E-25 2.6E-30 218.6 25.4 323 8-454 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.4E-24 3E-29 210.4 24.4 306 8-438 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 3.5E-22 7.6E-27 191.8 26.8 330 8-458 1-341 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.4E-21 3.1E-26 188.8 24.1 302 9-442 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 1.5E-18 3.2E-23 171.0 29.6 343 8-480 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.5E-17 7.5E-22 160.9 26.7 330 9-455 1-338 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.5E-15 3.2E-20 149.2 27.7 322 8-454 1-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.7E-15 3.7E-20 149.6 23.0 353 8-478 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.7 5.1E-15 1.1E-19 147.0 24.1 167 279-483 201-372 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 4.6E-15 1E-19 139.8 20.2 104 281-397 171-278 (279)
38 PRK13608 diacylglycerol glucos 99.6 3.7E-13 8E-18 133.8 28.3 148 279-456 201-353 (391)
39 PRK00025 lpxB lipid-A-disaccha 99.6 1.1E-13 2.4E-18 137.6 22.9 352 7-481 1-376 (380)
40 COG4671 Predicted glycosyl tra 99.6 1.4E-13 3E-18 126.1 18.3 338 5-442 7-366 (400)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.4E-15 3E-20 132.5 -2.7 137 282-442 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 1.9E-11 4.1E-16 121.4 24.3 149 278-454 204-361 (382)
43 TIGR03492 conserved hypothetic 99.5 3.8E-11 8.3E-16 118.8 26.1 142 280-442 205-365 (396)
44 PF03033 Glyco_transf_28: Glyc 99.4 1.4E-13 3.1E-18 116.0 4.4 125 10-152 1-134 (139)
45 cd03814 GT1_like_2 This family 99.3 1.8E-09 3.9E-14 106.1 29.7 141 282-456 198-347 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 7.3E-09 1.6E-13 105.7 30.4 142 282-457 264-416 (465)
47 cd03823 GT1_ExpE7_like This fa 99.3 1.3E-08 2.7E-13 99.8 30.3 144 281-455 191-343 (359)
48 COG3980 spsG Spore coat polysa 99.2 2.8E-09 6.1E-14 95.3 20.9 290 8-452 1-300 (318)
49 cd03817 GT1_UGDG_like This fam 99.2 3.4E-08 7.3E-13 97.2 29.5 148 282-459 203-361 (374)
50 cd03794 GT1_wbuB_like This fam 99.2 2.2E-08 4.7E-13 99.1 28.2 148 281-457 220-381 (394)
51 cd04962 GT1_like_5 This family 99.2 3.3E-08 7.2E-13 97.8 29.4 331 8-455 1-350 (371)
52 cd03818 GT1_ExpC_like This fam 99.2 6.6E-08 1.4E-12 96.7 31.4 97 340-458 280-383 (396)
53 cd03800 GT1_Sucrose_synthase T 99.1 7.5E-08 1.6E-12 96.2 29.7 348 17-456 20-383 (398)
54 cd03808 GT1_cap1E_like This fa 99.1 9.5E-08 2.1E-12 93.3 29.6 328 9-455 1-343 (359)
55 cd03816 GT1_ALG1_like This fam 99.1 1.9E-07 4.1E-12 93.8 31.8 354 6-457 2-400 (415)
56 cd03801 GT1_YqgM_like This fam 99.1 3.7E-07 8.1E-12 89.2 30.6 332 9-453 1-353 (374)
57 cd03820 GT1_amsD_like This fam 99.1 1.3E-07 2.9E-12 91.8 27.1 97 340-458 234-336 (348)
58 PRK05749 3-deoxy-D-manno-octul 99.0 7.2E-07 1.6E-11 90.1 31.0 96 342-458 303-405 (425)
59 cd03795 GT1_like_4 This family 99.0 5.2E-07 1.1E-11 88.6 29.0 149 282-458 192-349 (357)
60 TIGR03449 mycothiol_MshA UDP-N 99.0 2.2E-06 4.7E-11 86.1 31.4 96 340-457 282-384 (405)
61 PRK10307 putative glycosyl tra 99.0 5.3E-06 1.1E-10 83.4 33.9 147 282-457 230-389 (412)
62 cd03799 GT1_amsK_like This is 98.9 2.2E-06 4.7E-11 84.1 30.2 95 340-456 235-342 (355)
63 cd03798 GT1_wlbH_like This fam 98.9 3.6E-06 7.9E-11 82.5 31.9 318 17-443 13-346 (377)
64 cd03805 GT1_ALG2_like This fam 98.9 1.5E-06 3.3E-11 86.7 29.1 94 340-456 279-379 (392)
65 PF04007 DUF354: Protein of un 98.9 1.7E-06 3.6E-11 82.8 27.5 292 19-439 11-308 (335)
66 cd03825 GT1_wcfI_like This fam 98.9 2.2E-06 4.7E-11 84.4 29.7 112 340-480 243-362 (365)
67 cd03821 GT1_Bme6_like This fam 98.9 2.8E-06 6E-11 83.5 30.0 92 340-455 261-359 (375)
68 cd03819 GT1_WavL_like This fam 98.9 3.2E-06 6.8E-11 83.0 29.5 153 281-458 185-348 (355)
69 TIGR00236 wecB UDP-N-acetylglu 98.9 1.2E-06 2.6E-11 86.6 25.5 157 281-478 198-363 (365)
70 cd03822 GT1_ecORF704_like This 98.8 3.9E-06 8.5E-11 82.4 27.7 96 340-458 246-351 (366)
71 COG1519 KdtA 3-deoxy-D-manno-o 98.8 2.2E-05 4.9E-10 75.4 31.1 329 9-461 50-406 (419)
72 cd03811 GT1_WabH_like This fam 98.8 2.3E-06 5E-11 83.1 24.6 89 340-450 245-341 (353)
73 TIGR02472 sucr_P_syn_N sucrose 98.8 7.8E-06 1.7E-10 82.8 28.7 93 340-454 316-419 (439)
74 PRK14089 ipid-A-disaccharide s 98.8 9.7E-07 2.1E-11 85.1 20.4 106 351-476 229-344 (347)
75 PRK09922 UDP-D-galactose:(gluc 98.8 6.8E-06 1.5E-10 81.0 26.7 149 282-458 181-343 (359)
76 cd05844 GT1_like_7 Glycosyltra 98.8 9.2E-06 2E-10 80.2 27.8 94 340-455 244-350 (367)
77 TIGR03087 stp1 sugar transfera 98.8 2.9E-06 6.4E-11 84.8 24.2 93 340-456 279-377 (397)
78 cd03807 GT1_WbnK_like This fam 98.8 4.4E-05 9.6E-10 74.6 32.2 92 340-455 250-346 (365)
79 TIGR02468 sucrsPsyn_pln sucros 98.7 3E-05 6.5E-10 83.7 31.6 97 340-458 547-654 (1050)
80 cd03796 GT1_PIG-A_like This fa 98.7 3.1E-05 6.8E-10 77.5 30.3 131 281-442 193-334 (398)
81 cd03812 GT1_CapH_like This fam 98.7 1.2E-05 2.7E-10 78.9 25.8 140 282-450 193-340 (358)
82 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 7.6E-06 1.6E-10 80.8 23.1 133 280-442 198-338 (363)
83 cd04955 GT1_like_6 This family 98.6 5.4E-05 1.2E-09 74.4 29.0 137 284-454 196-343 (363)
84 cd03802 GT1_AviGT4_like This f 98.6 3E-05 6.5E-10 75.3 26.7 129 283-441 173-308 (335)
85 PRK15427 colanic acid biosynth 98.6 0.00014 3E-09 72.9 29.4 113 340-481 278-404 (406)
86 TIGR02149 glgA_Coryne glycogen 98.6 0.00018 4E-09 71.6 30.1 155 282-456 202-367 (388)
87 TIGR03088 stp2 sugar transfera 98.6 0.00026 5.7E-09 70.1 30.9 93 341-455 255-352 (374)
88 cd04951 GT1_WbdM_like This fam 98.5 3.9E-05 8.5E-10 75.3 24.3 129 281-442 188-327 (360)
89 PF02684 LpxB: Lipid-A-disacch 98.5 7E-05 1.5E-09 72.8 24.6 206 236-473 151-368 (373)
90 cd03792 GT1_Trehalose_phosphor 98.5 0.00032 7E-09 69.4 30.0 111 340-481 251-370 (372)
91 PLN02275 transferase, transfer 98.5 0.00098 2.1E-08 66.0 32.1 75 341-439 286-371 (371)
92 PLN02949 transferase, transfer 98.5 0.00047 1E-08 69.9 29.9 98 340-459 334-441 (463)
93 PRK01021 lpxB lipid-A-disaccha 98.4 0.00032 7E-09 71.4 28.0 192 236-459 379-589 (608)
94 cd03809 GT1_mtfB_like This fam 98.4 4E-05 8.7E-10 75.2 20.4 146 282-456 196-351 (365)
95 PLN02846 digalactosyldiacylgly 98.3 0.0017 3.7E-08 65.2 29.8 74 344-442 287-364 (462)
96 PRK15179 Vi polysaccharide bio 98.3 0.0027 5.8E-08 67.2 32.6 96 340-455 573-673 (694)
97 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00058 1.3E-08 67.2 25.4 131 280-440 201-338 (365)
98 TIGR02470 sucr_synth sucrose s 98.3 0.0026 5.6E-08 67.5 31.3 93 340-454 618-726 (784)
99 COG0763 LpxB Lipid A disacchar 98.2 0.00063 1.4E-08 64.9 22.9 207 237-480 155-379 (381)
100 cd03806 GT1_ALG11_like This fa 98.2 0.004 8.6E-08 62.7 30.3 81 340-443 304-394 (419)
101 PF02350 Epimerase_2: UDP-N-ac 98.2 6.8E-05 1.5E-09 73.0 16.1 252 100-441 51-318 (346)
102 KOG3349 Predicted glycosyltran 98.2 8.1E-06 1.8E-10 66.1 7.7 116 281-406 4-130 (170)
103 cd03804 GT1_wbaZ_like This fam 98.2 0.00018 3.8E-09 70.6 18.7 137 284-453 198-339 (351)
104 PLN00142 sucrose synthase 98.0 0.0055 1.2E-07 65.2 27.3 94 340-455 641-750 (815)
105 cd04949 GT1_gtfA_like This fam 98.0 0.0017 3.7E-08 64.2 22.2 102 340-460 260-364 (372)
106 PRK00654 glgA glycogen synthas 98.0 0.007 1.5E-07 61.9 27.1 83 340-440 336-427 (466)
107 COG0381 WecB UDP-N-acetylgluco 98.0 0.0019 4E-08 61.9 20.5 325 6-442 2-342 (383)
108 cd04946 GT1_AmsK_like This fam 97.9 0.00038 8.2E-09 69.8 16.0 112 340-477 288-406 (407)
109 cd03791 GT1_Glycogen_synthase_ 97.9 0.011 2.4E-07 60.6 26.9 83 340-440 350-441 (476)
110 cd03813 GT1_like_3 This family 97.9 0.0068 1.5E-07 62.1 24.3 95 340-456 353-457 (475)
111 TIGR02095 glgA glycogen/starch 97.9 0.015 3.4E-07 59.5 27.0 130 282-440 292-436 (473)
112 PF00534 Glycos_transf_1: Glyc 97.8 0.0002 4.3E-09 62.3 11.1 93 340-454 72-171 (172)
113 PLN02316 synthase/transferase 97.8 0.057 1.2E-06 59.3 30.2 115 340-477 899-1028(1036)
114 PF13844 Glyco_transf_41: Glyc 97.8 0.00042 9.1E-09 68.9 13.1 154 279-453 283-442 (468)
115 PLN02501 digalactosyldiacylgly 97.6 0.06 1.3E-06 56.1 26.0 76 342-442 602-682 (794)
116 COG5017 Uncharacterized conser 97.6 0.0008 1.7E-08 53.7 9.6 107 283-408 2-121 (161)
117 PRK15484 lipopolysaccharide 1, 97.5 0.0049 1.1E-07 61.2 16.9 113 340-481 256-376 (380)
118 TIGR02918 accessory Sec system 97.5 0.073 1.6E-06 54.7 25.3 105 340-460 375-485 (500)
119 cd01635 Glycosyltransferase_GT 97.5 0.019 4.2E-07 51.7 18.9 49 340-390 160-216 (229)
120 cd04950 GT1_like_1 Glycosyltra 97.3 0.24 5.1E-06 49.1 29.1 79 340-442 253-341 (373)
121 PRK14099 glycogen synthase; Pr 97.0 0.52 1.1E-05 48.4 28.3 38 5-44 1-46 (485)
122 COG3914 Spy Predicted O-linked 96.9 0.025 5.5E-07 56.7 14.3 135 278-437 427-574 (620)
123 PRK15490 Vi polysaccharide bio 96.9 0.52 1.1E-05 48.4 23.9 65 340-411 454-523 (578)
124 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0027 5.9E-08 52.6 6.3 80 340-441 52-135 (135)
125 PF13477 Glyco_trans_4_2: Glyc 96.6 0.019 4.1E-07 47.8 9.9 103 9-147 1-107 (139)
126 PRK09814 beta-1,6-galactofuran 96.4 0.026 5.7E-07 54.9 10.7 110 340-478 206-331 (333)
127 PF06722 DUF1205: Protein of u 96.4 0.0047 1E-07 47.6 4.0 54 267-320 27-85 (97)
128 COG1817 Uncharacterized protei 96.4 0.88 1.9E-05 42.5 22.1 106 15-147 7-112 (346)
129 TIGR02193 heptsyl_trn_I lipopo 96.3 0.2 4.4E-06 48.3 15.8 43 9-51 1-45 (319)
130 KOG4626 O-linked N-acetylgluco 95.8 0.1 2.2E-06 52.8 10.9 123 280-408 758-887 (966)
131 PRK10422 lipopolysaccharide co 95.7 0.96 2.1E-05 44.3 18.1 45 7-51 5-51 (352)
132 TIGR02201 heptsyl_trn_III lipo 95.6 0.91 2E-05 44.3 17.3 105 9-144 1-108 (344)
133 PRK10017 colanic acid biosynth 95.6 0.63 1.4E-05 46.7 16.1 176 271-482 225-424 (426)
134 PRK14098 glycogen synthase; Pr 95.5 0.34 7.4E-06 49.7 14.2 80 340-439 361-449 (489)
135 PRK10916 ADP-heptose:LPS hepto 95.3 1.9 4.1E-05 42.2 18.5 104 8-144 1-106 (348)
136 PF08660 Alg14: Oligosaccharid 95.3 0.19 4.2E-06 43.3 9.9 113 13-145 3-127 (170)
137 PRK10125 putative glycosyl tra 95.2 3.7 8.1E-05 41.1 26.0 101 296-435 256-365 (405)
138 PF13579 Glyco_trans_4_4: Glyc 95.1 0.02 4.4E-07 48.4 3.4 95 23-147 6-104 (160)
139 PF12000 Glyco_trans_4_3: Gkyc 94.9 0.27 5.9E-06 42.2 9.5 95 33-147 1-96 (171)
140 cd03789 GT1_LPS_heptosyltransf 94.5 3.3 7.2E-05 38.9 17.1 44 9-52 1-46 (279)
141 PHA01633 putative glycosyl tra 94.2 1.4 3E-05 42.6 13.8 85 340-441 200-307 (335)
142 PF13524 Glyco_trans_1_2: Glyc 94.0 0.5 1.1E-05 35.9 8.6 83 366-477 9-91 (92)
143 PHA01630 putative group 1 glyc 93.8 0.78 1.7E-05 44.5 11.4 39 348-388 197-242 (331)
144 PRK10964 ADP-heptose:LPS hepto 93.4 5 0.00011 38.7 16.4 41 8-48 1-43 (322)
145 TIGR02400 trehalose_OtsA alpha 93.3 0.75 1.6E-05 46.7 10.8 106 345-482 340-456 (456)
146 PRK02261 methylaspartate mutas 93.3 0.42 9.1E-06 39.6 7.4 51 5-55 1-51 (137)
147 TIGR03713 acc_sec_asp1 accesso 93.2 1.5 3.2E-05 45.3 12.8 93 341-460 409-507 (519)
148 TIGR02195 heptsyl_trn_II lipop 93.1 8.8 0.00019 37.2 20.2 102 9-144 1-105 (334)
149 cd02067 B12-binding B12 bindin 92.5 1.9 4.2E-05 34.6 10.3 45 9-53 1-45 (119)
150 COG0859 RfaF ADP-heptose:LPS h 91.8 13 0.00029 36.0 17.8 105 7-144 1-107 (334)
151 PF06258 Mito_fiss_Elm1: Mitoc 90.8 16 0.00034 35.0 19.8 121 280-409 146-281 (311)
152 PF13439 Glyco_transf_4: Glyco 90.4 0.25 5.5E-06 42.3 3.2 28 17-44 11-38 (177)
153 COG3660 Predicted nucleoside-d 90.1 15 0.00032 33.7 18.8 92 282-385 164-271 (329)
154 PLN02939 transferase, transfer 89.3 9.9 0.00021 41.8 14.4 84 340-440 836-930 (977)
155 cd03788 GT1_TPS Trehalose-6-Ph 89.3 1.5 3.2E-05 44.7 8.1 105 345-480 345-459 (460)
156 TIGR02919 accessory Sec system 89.1 8.4 0.00018 38.9 13.1 125 279-442 282-412 (438)
157 PRK13932 stationary phase surv 87.3 4.3 9.4E-05 37.4 9.0 42 5-48 3-44 (257)
158 cd02070 corrinoid_protein_B12- 85.9 9.3 0.0002 34.0 10.3 50 6-55 81-130 (201)
159 PLN03063 alpha,alpha-trehalose 85.6 4.5 9.8E-05 44.2 9.5 106 348-484 363-479 (797)
160 PRK12342 hypothetical protein; 85.0 12 0.00026 34.6 10.7 39 107-147 100-144 (254)
161 TIGR02370 pyl_corrinoid methyl 85.0 9.6 0.00021 33.8 9.8 50 6-55 83-132 (197)
162 PF02441 Flavoprotein: Flavopr 83.1 1.9 4.1E-05 35.3 4.2 45 8-53 1-45 (129)
163 smart00851 MGS MGS-like domain 82.7 9.9 0.00021 28.7 7.8 79 24-143 2-89 (90)
164 PF02951 GSH-S_N: Prokaryotic 82.5 2.3 4.9E-05 34.2 4.3 37 8-44 1-40 (119)
165 PF02310 B12-binding: B12 bind 82.1 7.8 0.00017 31.0 7.5 46 8-53 1-46 (121)
166 cd02071 MM_CoA_mut_B12_BD meth 82.1 24 0.00053 28.3 10.4 45 9-53 1-45 (122)
167 PF02142 MGS: MGS-like domain 82.0 1.5 3.3E-05 33.6 3.1 84 24-143 2-94 (95)
168 PRK06849 hypothetical protein; 79.7 8.7 0.00019 38.2 8.4 37 5-45 2-38 (389)
169 cd01424 MGS_CPS_II Methylglyox 79.3 18 0.0004 28.4 8.6 84 19-144 10-100 (110)
170 PRK00346 surE 5'(3')-nucleotid 79.0 5.5 0.00012 36.7 6.1 39 8-48 1-39 (250)
171 COG0496 SurE Predicted acid ph 78.9 6 0.00013 36.2 6.2 115 8-150 1-128 (252)
172 PF08323 Glyco_transf_5: Starc 78.9 13 0.00029 34.2 8.8 23 23-45 21-43 (245)
173 COG4370 Uncharacterized protei 78.6 8.2 0.00018 36.1 6.9 92 340-449 293-387 (412)
174 PF02571 CbiJ: Precorrin-6x re 77.8 6.9 0.00015 36.1 6.4 39 105-145 55-99 (249)
175 PRK03359 putative electron tra 77.6 27 0.0006 32.3 10.3 40 107-148 103-148 (256)
176 PRK13933 stationary phase surv 77.6 17 0.00036 33.6 8.8 39 8-48 1-39 (253)
177 COG1703 ArgK Putative periplas 77.4 6.2 0.00013 37.0 5.9 39 6-44 50-88 (323)
178 PRK02797 4-alpha-L-fucosyltran 76.4 72 0.0016 30.4 12.7 80 341-438 206-291 (322)
179 PRK08305 spoVFB dipicolinate s 76.3 4.7 0.0001 35.5 4.7 44 5-48 3-46 (196)
180 PRK13934 stationary phase surv 76.1 33 0.00073 31.8 10.3 39 8-48 1-39 (266)
181 TIGR00715 precor6x_red precorr 75.9 12 0.00026 34.7 7.5 37 107-145 56-98 (256)
182 PF00551 Formyl_trans_N: Formy 75.3 33 0.00072 29.8 9.9 105 8-147 1-109 (181)
183 cd01974 Nitrogenase_MoFe_beta 75.2 44 0.00095 33.8 12.0 36 106-146 367-402 (435)
184 cd03793 GT1_Glycogen_synthase_ 74.7 10 0.00022 39.3 7.2 80 350-441 467-552 (590)
185 PRK05973 replicative DNA helic 74.6 7.9 0.00017 35.4 5.9 48 8-55 65-112 (237)
186 PRK13935 stationary phase surv 74.3 27 0.00059 32.2 9.2 39 8-48 1-39 (253)
187 COG1618 Predicted nucleotide k 73.5 15 0.00033 31.1 6.7 39 6-44 4-43 (179)
188 cd01423 MGS_CPS_I_III Methylgl 71.5 38 0.00083 26.9 8.6 94 12-144 4-106 (116)
189 TIGR00087 surE 5'/3'-nucleotid 71.0 19 0.0004 33.2 7.4 39 8-48 1-39 (244)
190 cd07039 TPP_PYR_POX Pyrimidine 70.9 56 0.0012 27.9 10.0 28 357-386 63-96 (164)
191 PF01975 SurE: Survival protei 70.1 7.8 0.00017 34.3 4.6 40 8-48 1-40 (196)
192 cd01121 Sms Sms (bacterial rad 69.7 71 0.0015 31.5 11.6 45 9-53 84-128 (372)
193 COG2185 Sbm Methylmalonyl-CoA 69.7 13 0.00028 30.8 5.4 42 5-46 10-51 (143)
194 PRK13931 stationary phase surv 69.2 12 0.00026 34.7 5.8 99 23-147 15-129 (261)
195 PF01075 Glyco_transf_9: Glyco 69.2 15 0.00033 33.6 6.7 98 279-385 104-208 (247)
196 PF04464 Glyphos_transf: CDP-G 69.2 2.1 4.5E-05 42.3 0.9 117 340-477 251-368 (369)
197 COG1066 Sms Predicted ATP-depe 69.2 42 0.00091 33.2 9.5 84 9-128 95-178 (456)
198 cd01124 KaiC KaiC is a circadi 68.5 19 0.00042 31.2 6.9 45 10-54 2-46 (187)
199 PF04413 Glycos_transf_N: 3-De 68.1 23 0.00049 31.1 7.1 99 9-146 22-125 (186)
200 cd02069 methionine_synthase_B1 68.0 22 0.00047 32.0 7.1 50 6-55 87-136 (213)
201 PF04127 DFP: DNA / pantothena 67.9 4.2 9E-05 35.6 2.4 38 7-44 3-52 (185)
202 TIGR02655 circ_KaiC circadian 67.8 58 0.0013 33.5 11.1 50 7-56 263-312 (484)
203 COG0438 RfaG Glycosyltransfera 67.6 1.1E+02 0.0023 28.6 16.9 81 340-442 256-343 (381)
204 PRK13789 phosphoribosylamine-- 67.0 14 0.0003 37.2 6.3 92 6-144 3-97 (426)
205 PF05159 Capsule_synth: Capsul 66.9 34 0.00074 31.9 8.6 42 342-386 184-225 (269)
206 COG0052 RpsB Ribosomal protein 66.6 1E+02 0.0022 28.2 10.8 34 117-150 155-190 (252)
207 cd01965 Nitrogenase_MoFe_beta_ 65.8 81 0.0018 31.8 11.6 35 106-145 361-395 (428)
208 COG2099 CobK Precorrin-6x redu 64.7 33 0.00072 31.4 7.5 40 104-145 184-228 (257)
209 cd01980 Chlide_reductase_Y Chl 63.9 67 0.0014 32.3 10.5 32 110-146 344-375 (416)
210 PF12146 Hydrolase_4: Putative 63.4 16 0.00035 26.8 4.5 35 7-41 15-49 (79)
211 PRK04328 hypothetical protein; 62.6 1.3E+02 0.0027 27.8 11.4 48 7-54 23-70 (249)
212 cd03466 Nitrogenase_NifN_2 Nit 62.3 1E+02 0.0022 31.2 11.4 35 106-145 362-396 (429)
213 PF06925 MGDG_synth: Monogalac 62.2 21 0.00046 30.6 5.8 43 103-147 76-124 (169)
214 PRK08057 cobalt-precorrin-6x r 61.9 24 0.00051 32.6 6.3 40 105-146 54-99 (248)
215 TIGR00347 bioD dethiobiotin sy 61.8 99 0.0021 26.1 10.2 28 14-41 5-32 (166)
216 TIGR02398 gluc_glyc_Psyn gluco 61.5 2E+02 0.0043 29.6 13.8 111 343-484 364-484 (487)
217 PRK05647 purN phosphoribosylgl 61.2 67 0.0015 28.5 8.8 34 8-44 2-37 (200)
218 TIGR00639 PurN phosphoribosylg 60.8 1.2E+02 0.0025 26.7 10.5 86 8-128 1-89 (190)
219 cd07038 TPP_PYR_PDC_IPDC_like 60.6 76 0.0016 27.0 8.8 25 363-387 63-93 (162)
220 TIGR01285 nifN nitrogenase mol 60.5 73 0.0016 32.2 10.0 34 107-145 364-397 (432)
221 PRK06718 precorrin-2 dehydroge 59.8 48 0.001 29.5 7.7 147 279-462 10-165 (202)
222 PRK11823 DNA repair protein Ra 59.6 1.1E+02 0.0025 30.9 11.3 46 8-53 81-126 (446)
223 PRK01077 cobyrinic acid a,c-di 59.5 1.1E+02 0.0024 31.1 11.2 37 7-43 3-40 (451)
224 cd02065 B12-binding_like B12 b 59.1 40 0.00087 26.8 6.7 44 10-53 2-45 (125)
225 PRK14478 nitrogenase molybdenu 58.7 1.2E+02 0.0026 31.1 11.4 34 106-144 383-416 (475)
226 PRK14501 putative bifunctional 58.6 34 0.00074 37.2 7.8 113 344-484 345-464 (726)
227 PRK06067 flagellar accessory p 58.5 34 0.00074 31.1 6.8 47 8-54 26-72 (234)
228 TIGR02015 BchY chlorophyllide 58.3 1.1E+02 0.0024 30.8 10.8 31 9-44 287-317 (422)
229 PRK07313 phosphopantothenoylcy 57.6 13 0.00029 32.4 3.7 43 8-51 2-44 (182)
230 cd01985 ETF The electron trans 57.3 1.3E+02 0.0028 26.0 10.0 39 105-145 80-121 (181)
231 TIGR01501 MthylAspMutase methy 57.2 55 0.0012 26.9 7.0 47 7-53 1-47 (134)
232 PF01012 ETF: Electron transfe 57.2 29 0.00063 29.5 5.7 95 23-146 19-121 (164)
233 PF02571 CbiJ: Precorrin-6x re 57.1 96 0.0021 28.6 9.4 103 24-145 118-225 (249)
234 PRK10867 signal recognition pa 56.7 1.1E+02 0.0024 30.9 10.4 42 7-48 100-142 (433)
235 KOG0202 Ca2+ transporting ATPa 56.7 1.4E+02 0.0031 32.5 11.3 172 281-486 572-753 (972)
236 PRK05595 replicative DNA helic 56.5 1.6E+02 0.0036 29.8 11.9 44 10-53 204-248 (444)
237 COG1797 CobB Cobyrinic acid a, 56.4 18 0.00038 35.9 4.6 37 9-45 2-40 (451)
238 PRK00090 bioD dithiobiotin syn 56.4 1.4E+02 0.0029 26.8 10.4 33 10-42 2-35 (222)
239 PRK05920 aromatic acid decarbo 56.0 21 0.00047 31.7 4.7 45 7-52 3-47 (204)
240 PRK05986 cob(I)alamin adenolsy 55.8 1.4E+02 0.0031 26.2 10.7 101 6-128 21-125 (191)
241 PRK06029 3-octaprenyl-4-hydrox 54.4 22 0.00048 31.1 4.5 44 8-52 2-46 (185)
242 TIGR02852 spore_dpaB dipicolin 54.1 16 0.00036 31.9 3.6 39 8-46 1-39 (187)
243 TIGR01283 nifE nitrogenase mol 53.9 1.9E+02 0.0042 29.4 11.9 36 105-145 384-419 (456)
244 COG0003 ArsA Predicted ATPase 53.4 1.3E+02 0.0029 28.9 10.0 41 8-48 2-43 (322)
245 COG0801 FolK 7,8-dihydro-6-hyd 53.3 29 0.00062 29.5 4.8 33 282-314 3-35 (160)
246 TIGR00416 sms DNA repair prote 53.3 63 0.0014 32.9 8.2 44 9-52 96-139 (454)
247 PF07429 Glyco_transf_56: 4-al 53.0 2.3E+02 0.0049 27.6 12.1 83 340-440 244-332 (360)
248 COG1484 DnaC DNA replication p 52.7 26 0.00055 32.5 4.9 47 7-53 105-151 (254)
249 PRK06321 replicative DNA helic 52.6 1.4E+02 0.0029 30.7 10.5 43 10-52 229-272 (472)
250 cd07025 Peptidase_S66 LD-Carbo 52.2 26 0.00057 33.0 5.0 78 291-390 44-123 (282)
251 cd01968 Nitrogenase_NifE_I Nit 51.9 1.5E+02 0.0033 29.6 10.7 35 106-145 346-380 (410)
252 PRK05579 bifunctional phosphop 51.4 28 0.00061 34.7 5.2 49 4-53 3-51 (399)
253 PF02585 PIG-L: GlcNAc-PI de-N 51.4 1.3E+02 0.0027 24.2 9.1 23 102-126 86-108 (128)
254 PF01371 Trp_repressor: Trp re 51.4 41 0.0009 25.3 4.9 46 426-477 14-59 (87)
255 PRK09620 hypothetical protein; 50.6 25 0.00054 32.0 4.4 39 6-44 2-52 (229)
256 TIGR02113 coaC_strep phosphopa 50.1 22 0.00048 30.9 3.8 42 9-51 2-43 (177)
257 TIGR00460 fmt methionyl-tRNA f 50.1 1.4E+02 0.0031 28.5 9.8 32 8-44 1-32 (313)
258 COG1422 Predicted membrane pro 50.1 45 0.00098 29.2 5.5 85 371-481 24-108 (201)
259 PF00731 AIRC: AIR carboxylase 49.9 1.6E+02 0.0034 24.8 10.2 137 282-462 2-149 (150)
260 PRK14098 glycogen synthase; Pr 49.4 27 0.00059 35.9 5.0 35 8-44 6-48 (489)
261 PF01210 NAD_Gly3P_dh_N: NAD-d 49.1 13 0.00029 31.4 2.3 32 9-45 1-32 (157)
262 cd07037 TPP_PYR_MenD Pyrimidin 48.9 69 0.0015 27.3 6.6 28 357-386 60-93 (162)
263 PRK09165 replicative DNA helic 48.8 1.4E+02 0.003 30.9 10.0 44 10-53 220-278 (497)
264 TIGR01286 nifK nitrogenase mol 48.8 2.3E+02 0.0049 29.5 11.5 35 106-145 427-461 (515)
265 TIGR03878 thermo_KaiC_2 KaiC d 48.5 2.3E+02 0.0049 26.3 11.7 40 8-47 37-76 (259)
266 TIGR02195 heptsyl_trn_II lipop 48.5 2.6E+02 0.0055 26.9 12.3 86 21-147 193-278 (334)
267 cd01977 Nitrogenase_VFe_alpha 48.3 1.7E+02 0.0036 29.4 10.3 33 108-145 350-382 (415)
268 COG0552 FtsY Signal recognitio 48.3 1.5E+02 0.0033 28.5 9.2 43 7-49 139-181 (340)
269 TIGR00421 ubiX_pad polyprenyl 48.0 24 0.00052 30.8 3.8 42 9-51 1-42 (181)
270 PRK06732 phosphopantothenate-- 47.9 24 0.00052 32.1 3.9 37 8-44 1-49 (229)
271 TIGR00064 ftsY signal recognit 47.7 2.3E+02 0.0049 26.6 10.5 40 7-46 72-111 (272)
272 TIGR03446 mycothiol_Mca mycoth 47.1 1.6E+02 0.0035 27.8 9.3 19 104-124 109-127 (283)
273 PF09314 DUF1972: Domain of un 46.9 1.4E+02 0.0031 26.1 8.3 31 17-47 15-46 (185)
274 TIGR00959 ffh signal recogniti 46.9 1.8E+02 0.004 29.3 10.2 42 8-49 100-142 (428)
275 PF00448 SRP54: SRP54-type pro 46.8 1.5E+02 0.0032 26.2 8.7 39 9-47 3-41 (196)
276 PRK01381 Trp operon repressor; 46.8 58 0.0013 25.1 5.1 48 425-478 19-66 (99)
277 PRK08760 replicative DNA helic 46.8 1.1E+02 0.0023 31.5 8.7 45 9-53 231-276 (476)
278 TIGR00665 DnaB replicative DNA 46.7 97 0.0021 31.3 8.5 45 9-53 197-242 (434)
279 KOG1250 Threonine/serine dehyd 46.4 3.1E+02 0.0066 27.2 15.1 114 282-442 196-317 (457)
280 PRK02155 ppnK NAD(+)/NADH kina 46.3 80 0.0017 30.0 7.2 27 357-385 63-93 (291)
281 TIGR01470 cysG_Nterm siroheme 46.0 1.8E+02 0.0039 25.9 9.1 149 280-462 10-165 (205)
282 PF07355 GRDB: Glycine/sarcosi 46.0 36 0.00077 32.8 4.7 40 103-144 67-116 (349)
283 PRK13982 bifunctional SbtC-lik 45.9 28 0.00061 35.4 4.3 41 5-45 254-306 (475)
284 cd07062 Peptidase_S66_mccF_lik 45.5 35 0.00077 32.6 4.8 77 291-389 48-126 (308)
285 PF09001 DUF1890: Domain of un 45.5 26 0.00057 28.6 3.2 34 18-51 10-43 (139)
286 cd01421 IMPCH Inosine monophos 45.4 94 0.002 27.2 6.8 31 21-53 10-40 (187)
287 TIGR01425 SRP54_euk signal rec 45.3 2.2E+02 0.0047 28.8 10.3 40 8-47 101-140 (429)
288 cd01715 ETF_alpha The electron 45.2 1.9E+02 0.0042 24.6 10.1 42 104-147 71-115 (168)
289 cd01452 VWA_26S_proteasome_sub 44.8 2E+02 0.0043 25.2 8.9 62 8-70 108-173 (187)
290 COG2910 Putative NADH-flavin r 44.8 21 0.00045 31.0 2.7 33 8-44 1-33 (211)
291 COG0859 RfaF ADP-heptose:LPS h 44.8 1.7E+02 0.0036 28.4 9.5 99 7-147 175-278 (334)
292 PRK06988 putative formyltransf 44.7 2.3E+02 0.005 27.1 10.2 32 8-44 3-34 (312)
293 COG1663 LpxK Tetraacyldisaccha 44.2 30 0.00065 33.2 3.9 32 13-44 55-86 (336)
294 PRK06249 2-dehydropantoate 2-r 44.1 29 0.00063 33.3 4.0 34 6-44 4-37 (313)
295 cd00984 DnaB_C DnaB helicase C 43.7 2.5E+02 0.0054 25.4 12.4 45 9-53 15-60 (242)
296 KOG2941 Beta-1,4-mannosyltrans 43.5 3.2E+02 0.007 26.6 30.4 129 4-152 9-142 (444)
297 TIGR03877 thermo_KaiC_1 KaiC d 43.4 2E+02 0.0043 26.2 9.3 48 7-54 21-68 (237)
298 PLN02470 acetolactate synthase 43.2 76 0.0017 33.5 7.4 92 286-386 2-109 (585)
299 PRK07773 replicative DNA helic 42.8 1.7E+02 0.0036 32.9 10.1 44 10-53 220-264 (886)
300 PRK10490 sensor protein KdpD; 42.7 1.1E+02 0.0024 34.2 8.8 40 7-46 24-63 (895)
301 TIGR01321 TrpR trp operon repr 42.6 83 0.0018 24.0 5.3 48 425-478 19-66 (94)
302 PRK07206 hypothetical protein; 42.2 1E+02 0.0022 30.9 7.8 32 8-44 3-34 (416)
303 KOG3339 Predicted glycosyltran 42.1 1.8E+02 0.0039 25.3 7.8 24 11-34 41-64 (211)
304 COG1748 LYS9 Saccharopine dehy 41.7 1.6E+02 0.0036 29.1 8.7 53 7-70 1-55 (389)
305 PRK11889 flhF flagellar biosyn 41.6 2.4E+02 0.0053 28.2 9.7 41 7-47 241-281 (436)
306 COG0541 Ffh Signal recognition 41.4 1E+02 0.0022 30.8 7.1 48 7-54 100-147 (451)
307 PRK14477 bifunctional nitrogen 41.3 3E+02 0.0066 31.0 11.8 36 106-146 379-414 (917)
308 cd01425 RPS2 Ribosomal protein 41.2 2.5E+02 0.0054 24.7 9.4 34 116-149 125-160 (193)
309 PRK05636 replicative DNA helic 41.1 1.3E+02 0.0029 31.0 8.4 43 10-52 268-311 (505)
310 KOG0853 Glycosyltransferase [C 40.6 61 0.0013 33.1 5.7 65 371-453 381-445 (495)
311 TIGR03880 KaiC_arch_3 KaiC dom 39.8 2.8E+02 0.006 24.8 10.8 48 8-55 17-64 (224)
312 PRK04885 ppnK inorganic polyph 39.3 39 0.00084 31.5 3.9 28 357-386 35-68 (265)
313 TIGR02699 archaeo_AfpA archaeo 39.2 47 0.001 28.7 4.1 42 9-51 1-44 (174)
314 TIGR00521 coaBC_dfp phosphopan 39.1 46 0.001 33.0 4.6 47 6-53 2-48 (390)
315 COG4394 Uncharacterized protei 39.1 3.4E+02 0.0073 25.6 13.0 50 342-396 239-291 (370)
316 COG4088 Predicted nucleotide k 39.0 41 0.00089 29.9 3.7 34 10-43 4-37 (261)
317 PRK12475 thiamine/molybdopteri 38.9 2.2E+02 0.0047 27.7 9.1 31 6-41 23-54 (338)
318 PRK08155 acetolactate synthase 38.8 1.1E+02 0.0023 32.2 7.6 90 286-386 3-109 (564)
319 cd07035 TPP_PYR_POX_like Pyrim 38.7 2.3E+02 0.005 23.5 9.8 25 363-387 63-93 (155)
320 PRK05784 phosphoribosylamine-- 38.7 85 0.0019 32.3 6.6 32 8-44 1-34 (486)
321 COG2874 FlaH Predicted ATPases 38.3 99 0.0021 27.8 5.9 91 17-130 38-135 (235)
322 TIGR01007 eps_fam capsular exo 38.0 61 0.0013 28.6 4.9 36 7-42 16-53 (204)
323 TIGR02700 flavo_MJ0208 archaeo 37.7 51 0.0011 30.1 4.4 44 9-52 1-46 (234)
324 COG0107 HisF Imidazoleglycerol 37.4 1.6E+02 0.0035 26.7 7.1 90 267-411 86-176 (256)
325 PF07991 IlvN: Acetohydroxy ac 37.3 49 0.0011 28.2 3.8 36 6-46 3-38 (165)
326 PRK12921 2-dehydropantoate 2-r 37.3 54 0.0012 31.1 4.8 31 8-43 1-31 (305)
327 PRK10916 ADP-heptose:LPS hepto 37.2 2E+02 0.0042 28.0 8.8 88 23-147 201-288 (348)
328 PRK06522 2-dehydropantoate 2-r 36.9 47 0.001 31.5 4.3 31 8-43 1-31 (304)
329 COG0300 DltE Short-chain dehyd 35.9 2.9E+02 0.0062 25.8 8.9 33 8-43 6-38 (265)
330 PRK02231 ppnK inorganic polyph 35.8 38 0.00082 31.7 3.2 32 352-385 37-72 (272)
331 TIGR01162 purE phosphoribosyla 35.8 2.7E+02 0.0059 23.6 9.0 33 426-463 116-148 (156)
332 TIGR00173 menD 2-succinyl-5-en 35.8 2.4E+02 0.0052 28.4 9.3 26 358-385 64-95 (432)
333 PRK02122 glucosamine-6-phospha 35.7 3.8E+02 0.0083 28.8 11.0 35 7-41 369-403 (652)
334 PRK13604 luxD acyl transferase 35.7 82 0.0018 30.1 5.5 36 6-41 35-70 (307)
335 COG1435 Tdk Thymidine kinase [ 35.7 1.6E+02 0.0035 26.0 6.8 37 9-45 5-42 (201)
336 KOG2825 Putative arsenite-tran 35.5 3.7E+02 0.0079 25.0 9.2 121 5-127 16-151 (323)
337 PF04244 DPRP: Deoxyribodipyri 35.5 83 0.0018 28.5 5.3 25 20-44 47-71 (224)
338 cd01141 TroA_d Periplasmic bin 35.4 60 0.0013 28.1 4.4 39 105-146 59-99 (186)
339 PRK06276 acetolactate synthase 35.2 2.2E+02 0.0047 30.2 9.2 28 357-386 63-96 (586)
340 PF00148 Oxidored_nitro: Nitro 35.1 3.5E+02 0.0075 26.8 10.3 35 106-145 331-365 (398)
341 TIGR02237 recomb_radB DNA repa 34.9 3.2E+02 0.0068 24.0 10.2 45 9-53 14-59 (209)
342 cd01840 SGNH_hydrolase_yrhL_li 34.6 98 0.0021 25.7 5.4 39 279-318 50-88 (150)
343 COG0059 IlvC Ketol-acid reduct 34.6 67 0.0015 30.4 4.5 53 6-70 17-69 (338)
344 PRK10416 signal recognition pa 34.5 4.1E+02 0.0089 25.5 10.2 40 7-46 114-153 (318)
345 TIGR01918 various_sel_PB selen 34.5 66 0.0014 31.9 4.7 41 103-145 63-113 (431)
346 TIGR01917 gly_red_sel_B glycin 34.4 66 0.0014 31.9 4.7 42 102-145 62-113 (431)
347 PRK13982 bifunctional SbtC-lik 34.4 69 0.0015 32.7 5.0 47 6-53 69-115 (475)
348 PRK12825 fabG 3-ketoacyl-(acyl 34.1 2.1E+02 0.0046 25.5 8.1 39 1-44 1-39 (249)
349 PRK14618 NAD(P)H-dependent gly 34.1 54 0.0012 31.6 4.2 36 1-44 1-36 (328)
350 cd01976 Nitrogenase_MoFe_alpha 34.1 50 0.0011 33.3 4.0 37 105-146 358-394 (421)
351 KOG0832 Mitochondrial/chloropl 34.0 2.2E+02 0.0048 25.7 7.3 115 17-150 90-207 (251)
352 PF03808 Glyco_tran_WecB: Glyc 34.0 3E+02 0.0066 23.6 11.7 87 213-318 49-135 (172)
353 TIGR00379 cobB cobyrinic acid 34.0 3.8E+02 0.0081 27.3 10.4 34 10-43 2-36 (449)
354 PRK12311 rpsB 30S ribosomal pr 33.9 4E+02 0.0088 25.7 9.8 33 117-149 151-185 (326)
355 TIGR01861 ANFD nitrogenase iro 33.9 4.6E+02 0.0099 27.3 10.9 31 110-145 392-422 (513)
356 TIGR00708 cobA cob(I)alamin ad 33.8 3.1E+02 0.0068 23.7 10.7 35 7-41 5-39 (173)
357 smart00096 UTG Uteroglobin. 33.5 1.2E+02 0.0027 21.6 4.7 54 426-486 16-69 (69)
358 PRK14077 pnk inorganic polypho 33.4 53 0.0011 31.1 3.8 28 356-385 63-94 (287)
359 PF02558 ApbA: Ketopantoate re 33.4 66 0.0014 26.7 4.2 28 26-53 12-39 (151)
360 COG0503 Apt Adenine/guanine ph 33.1 1E+02 0.0022 26.8 5.3 37 107-145 44-82 (179)
361 COG2894 MinD Septum formation 33.0 79 0.0017 28.5 4.5 36 8-43 2-39 (272)
362 PRK08322 acetolactate synthase 32.9 2.2E+02 0.0048 29.7 8.8 24 363-386 67-96 (547)
363 PLN02939 transferase, transfer 32.9 72 0.0016 35.5 5.1 40 6-45 480-525 (977)
364 CHL00076 chlB photochlorophyll 32.8 61 0.0013 33.6 4.5 36 106-146 364-399 (513)
365 PRK09302 circadian clock prote 32.8 1.4E+02 0.003 31.0 7.2 48 7-54 273-320 (509)
366 cd02034 CooC The accessory pro 32.7 86 0.0019 24.9 4.5 37 9-45 1-37 (116)
367 TIGR00355 purH phosphoribosyla 32.7 2.1E+02 0.0045 29.4 7.9 93 22-132 11-104 (511)
368 cd06533 Glyco_transf_WecG_TagA 32.5 3.2E+02 0.007 23.4 9.7 100 201-319 33-134 (171)
369 COG3195 Uncharacterized protei 32.4 2.6E+02 0.0056 23.8 7.1 73 371-458 89-162 (176)
370 PRK10353 3-methyl-adenine DNA 32.3 1.8E+02 0.0039 25.5 6.6 89 384-477 22-120 (187)
371 KOG1209 1-Acyl dihydroxyaceton 32.3 62 0.0013 28.9 3.7 36 1-41 1-38 (289)
372 PF01380 SIS: SIS domain SIS d 32.1 96 0.0021 24.7 4.9 39 11-49 56-94 (131)
373 CHL00072 chlL photochlorophyll 32.0 81 0.0018 29.9 4.9 34 8-41 1-34 (290)
374 PF01695 IstB_IS21: IstB-like 31.9 64 0.0014 28.0 3.9 39 6-44 46-84 (178)
375 PLN02929 NADH kinase 31.8 61 0.0013 30.8 4.0 65 357-441 64-137 (301)
376 TIGR02531 yecD_yerC TrpR-relat 31.8 1.4E+02 0.0031 22.5 5.1 45 426-477 16-60 (88)
377 PRK07710 acetolactate synthase 31.8 2.3E+02 0.0049 29.9 8.7 28 357-386 78-111 (571)
378 PRK12744 short chain dehydroge 31.7 2.5E+02 0.0055 25.5 8.2 39 1-42 1-39 (257)
379 PRK06719 precorrin-2 dehydroge 31.6 68 0.0015 27.2 3.9 34 6-44 12-45 (157)
380 PRK00784 cobyric acid synthase 31.5 3.6E+02 0.0078 27.8 9.8 34 9-42 4-38 (488)
381 PRK06456 acetolactate synthase 31.4 2.6E+02 0.0057 29.4 9.1 24 363-386 72-101 (572)
382 COG2085 Predicted dinucleotide 31.2 73 0.0016 28.4 4.0 32 8-44 2-33 (211)
383 PLN02924 thymidylate kinase 31.1 3.9E+02 0.0086 24.0 9.9 38 7-44 16-53 (220)
384 PRK07688 thiamine/molybdopteri 30.9 3.6E+02 0.0078 26.2 9.2 33 6-43 23-56 (339)
385 cd00861 ProRS_anticodon_short 30.8 89 0.0019 23.3 4.2 35 8-42 2-38 (94)
386 PF07905 PucR: Purine cataboli 30.8 2.8E+02 0.0061 22.2 7.6 45 267-315 33-78 (123)
387 PF05728 UPF0227: Uncharacteri 30.8 79 0.0017 27.7 4.3 45 106-150 47-92 (187)
388 PF02374 ArsA_ATPase: Anion-tr 30.7 74 0.0016 30.4 4.4 41 8-48 1-42 (305)
389 cd01075 NAD_bind_Leu_Phe_Val_D 30.6 80 0.0017 28.0 4.4 33 4-41 25-57 (200)
390 PRK02910 light-independent pro 30.5 74 0.0016 33.0 4.7 35 107-146 353-387 (519)
391 PRK04148 hypothetical protein; 30.3 98 0.0021 25.5 4.4 30 6-41 16-45 (134)
392 PF05225 HTH_psq: helix-turn-h 30.3 77 0.0017 20.3 3.1 27 427-456 1-27 (45)
393 cd01981 Pchlide_reductase_B Pc 30.3 76 0.0016 32.0 4.7 36 107-147 361-396 (430)
394 COG0467 RAD55 RecA-superfamily 30.3 1.7E+02 0.0036 27.1 6.7 49 7-55 23-71 (260)
395 PRK04539 ppnK inorganic polyph 30.2 85 0.0018 29.8 4.7 54 356-441 67-124 (296)
396 PRK03094 hypothetical protein; 30.2 47 0.001 24.4 2.3 21 24-44 10-30 (80)
397 PRK00881 purH bifunctional pho 30.0 2.6E+02 0.0057 28.8 8.2 39 21-70 14-52 (513)
398 TIGR00715 precor6x_red precorr 29.9 3.4E+02 0.0073 25.2 8.4 40 105-146 186-230 (256)
399 PRK12724 flagellar biosynthesi 29.9 4.4E+02 0.0096 26.6 9.6 41 8-48 224-265 (432)
400 PRK01911 ppnK inorganic polyph 29.9 71 0.0015 30.3 4.1 56 354-441 61-120 (292)
401 COG2927 HolC DNA polymerase II 29.7 9.9 0.00022 31.4 -1.4 68 300-398 20-87 (144)
402 PRK08229 2-dehydropantoate 2-r 29.7 63 0.0014 31.3 3.9 32 8-44 3-34 (341)
403 TIGR01278 DPOR_BchB light-inde 29.6 74 0.0016 33.0 4.5 36 107-147 355-390 (511)
404 cd02032 Bchl_like This family 29.6 86 0.0019 29.1 4.7 34 8-41 1-34 (267)
405 PRK09219 xanthine phosphoribos 29.5 1.1E+02 0.0024 26.9 4.9 40 105-146 39-80 (189)
406 cd00561 CobA_CobO_BtuR ATP:cor 29.4 3.6E+02 0.0077 22.9 10.5 99 9-129 4-106 (159)
407 TIGR01281 DPOR_bchL light-inde 29.2 90 0.002 29.0 4.7 34 8-41 1-34 (268)
408 PRK11064 wecC UDP-N-acetyl-D-m 29.1 75 0.0016 31.9 4.4 33 6-43 2-34 (415)
409 TIGR00877 purD phosphoribosyla 29.0 2.8E+02 0.006 27.8 8.5 34 8-46 1-34 (423)
410 PF10093 DUF2331: Uncharacteri 29.0 1.4E+02 0.003 29.4 5.9 100 293-398 192-299 (374)
411 cd00316 Oxidoreductase_nitroge 28.9 4E+02 0.0088 26.3 9.7 37 105-146 337-373 (399)
412 PF13450 NAD_binding_8: NAD(P) 28.8 69 0.0015 22.6 3.0 17 25-41 9-25 (68)
413 PRK09739 hypothetical protein; 28.7 1.4E+02 0.0029 26.4 5.5 38 5-42 1-41 (199)
414 COG0041 PurE Phosphoribosylcar 28.5 3.6E+02 0.0078 22.7 13.5 144 282-465 4-154 (162)
415 COG2120 Uncharacterized protei 28.5 98 0.0021 28.3 4.7 39 4-42 7-45 (237)
416 PRK07449 2-succinyl-5-enolpyru 28.5 1.7E+02 0.0037 30.7 7.1 24 363-386 76-105 (568)
417 PRK03372 ppnK inorganic polyph 28.5 84 0.0018 30.0 4.3 29 356-386 71-103 (306)
418 cd02072 Glm_B12_BD B12 binding 28.4 2.5E+02 0.0054 22.9 6.4 45 9-53 1-45 (128)
419 PF02776 TPP_enzyme_N: Thiamin 28.1 1.8E+02 0.004 24.8 6.1 29 357-387 64-98 (172)
420 COG2210 Peroxiredoxin family p 28.1 1.2E+02 0.0026 25.0 4.5 34 11-44 7-40 (137)
421 PRK07236 hypothetical protein; 28.1 70 0.0015 31.6 4.0 35 1-41 1-35 (386)
422 TIGR01012 Sa_S2_E_A ribosomal 28.0 77 0.0017 28.0 3.6 33 117-149 107-141 (196)
423 PF06506 PrpR_N: Propionate ca 27.7 76 0.0017 27.4 3.7 30 357-389 34-63 (176)
424 PF06745 KaiC: KaiC; InterPro 27.7 2.5E+02 0.0054 25.1 7.3 49 7-55 19-68 (226)
425 PRK07525 sulfoacetaldehyde ace 27.5 3.6E+02 0.0078 28.5 9.3 28 357-386 68-101 (588)
426 KOG3062 RNA polymerase II elon 27.3 1.1E+02 0.0025 27.6 4.5 33 9-41 3-36 (281)
427 KOG0780 Signal recognition par 27.2 4.5E+02 0.0098 26.1 8.7 41 8-48 102-142 (483)
428 PRK02649 ppnK inorganic polyph 27.1 82 0.0018 30.1 4.0 27 357-385 68-98 (305)
429 PRK05234 mgsA methylglyoxal sy 27.1 3.7E+02 0.0079 22.3 9.6 97 7-145 4-112 (142)
430 PF03720 UDPG_MGDP_dh_C: UDP-g 26.8 77 0.0017 24.7 3.2 23 22-44 17-39 (106)
431 cd01983 Fer4_NifH The Fer4_Nif 26.7 1.4E+02 0.0031 21.7 4.8 33 10-42 2-34 (99)
432 PF02702 KdpD: Osmosensitive K 26.6 1.3E+02 0.0028 26.7 4.7 39 7-45 5-43 (211)
433 PF01470 Peptidase_C15: Pyrogl 26.3 1.2E+02 0.0027 26.9 4.7 43 8-50 1-48 (202)
434 PF14359 DUF4406: Domain of un 26.3 1E+02 0.0022 23.5 3.6 28 12-39 2-33 (92)
435 PRK12829 short chain dehydroge 26.3 1.1E+02 0.0024 27.9 4.8 35 5-43 9-43 (264)
436 PRK00005 fmt methionyl-tRNA fo 26.2 5.8E+02 0.013 24.3 10.4 31 8-43 1-31 (309)
437 PRK00885 phosphoribosylamine-- 26.1 1.5E+02 0.0033 29.7 6.0 30 8-42 1-31 (420)
438 PF02844 GARS_N: Phosphoribosy 25.9 96 0.0021 24.0 3.4 38 105-144 51-91 (100)
439 COG3349 Uncharacterized conser 25.9 70 0.0015 32.5 3.4 29 8-41 1-29 (485)
440 TIGR01196 edd 6-phosphoglucona 25.9 5.4E+02 0.012 27.1 9.6 46 104-151 131-181 (601)
441 cd06559 Endonuclease_V Endonuc 25.9 80 0.0017 28.2 3.4 40 107-146 82-128 (208)
442 PRK06079 enoyl-(acyl carrier p 25.6 1.2E+02 0.0025 27.8 4.7 39 1-42 1-40 (252)
443 PTZ00318 NADH dehydrogenase-li 25.6 83 0.0018 31.7 4.0 35 5-44 8-42 (424)
444 PRK14619 NAD(P)H-dependent gly 25.6 86 0.0019 29.9 3.9 34 6-44 3-36 (308)
445 PLN02293 adenine phosphoribosy 25.6 1.7E+02 0.0036 25.7 5.4 40 104-145 50-91 (187)
446 PRK14092 2-amino-4-hydroxy-6-h 25.5 1.6E+02 0.0035 25.1 5.1 29 280-308 7-35 (163)
447 PRK06395 phosphoribosylamine-- 25.5 3.8E+02 0.0081 27.1 8.6 32 7-43 2-33 (435)
448 PF00920 ILVD_EDD: Dehydratase 25.4 77 0.0017 32.5 3.6 48 103-152 66-117 (521)
449 TIGR03029 EpsG chain length de 25.3 1.3E+02 0.0029 28.0 5.1 36 6-41 101-138 (274)
450 PF03698 UPF0180: Uncharacteri 25.2 63 0.0014 23.8 2.2 21 24-44 10-30 (80)
451 PRK06222 ferredoxin-NADP(+) re 25.1 1.6E+02 0.0034 27.7 5.6 39 8-48 99-137 (281)
452 PRK04020 rps2P 30S ribosomal p 25.0 90 0.002 27.8 3.6 34 117-150 113-148 (204)
453 PRK08199 thiamine pyrophosphat 25.0 4.8E+02 0.011 27.3 9.7 28 357-386 71-104 (557)
454 PRK04940 hypothetical protein; 24.8 1.4E+02 0.0031 25.9 4.7 31 118-148 60-91 (180)
455 TIGR01279 DPOR_bchN light-inde 24.8 5E+02 0.011 25.9 9.3 35 7-46 274-308 (407)
456 cd03412 CbiK_N Anaerobic cobal 24.6 1.4E+02 0.003 24.2 4.4 38 281-318 2-41 (127)
457 PRK08057 cobalt-precorrin-6x r 24.4 4.6E+02 0.0099 24.2 8.2 40 105-146 179-222 (248)
458 TIGR00118 acolac_lg acetolacta 24.4 3.8E+02 0.0083 28.0 8.8 24 363-386 68-97 (558)
459 COG2099 CobK Precorrin-6x redu 24.4 83 0.0018 28.9 3.3 39 105-145 55-99 (257)
460 PLN02240 UDP-glucose 4-epimera 24.4 1.1E+02 0.0025 29.4 4.7 32 7-42 5-36 (352)
461 KOG1111 N-acetylglucosaminyltr 24.4 6.9E+02 0.015 24.6 10.2 83 295-385 210-301 (426)
462 TIGR00110 ilvD dihydroxy-acid 24.3 3.3E+02 0.0071 28.3 7.8 47 103-151 76-126 (535)
463 PF12695 Abhydrolase_5: Alpha/ 24.3 1.5E+02 0.0031 23.9 4.7 34 11-44 2-35 (145)
464 COG0409 HypD Hydrogenase matur 24.2 2.8E+02 0.0061 26.6 6.6 25 268-292 121-145 (364)
465 PRK14569 D-alanyl-alanine synt 24.2 1.4E+02 0.0031 28.2 5.2 37 6-42 2-42 (296)
466 PF03721 UDPG_MGDP_dh_N: UDP-g 24.2 1.2E+02 0.0025 26.5 4.2 30 8-42 1-30 (185)
467 PRK13234 nifH nitrogenase redu 24.1 1.5E+02 0.0032 28.2 5.2 33 9-41 6-38 (295)
468 PRK03378 ppnK inorganic polyph 24.0 97 0.0021 29.4 3.8 28 356-385 62-93 (292)
469 PF05762 VWA_CoxE: VWA domain 23.9 1.6E+02 0.0035 26.5 5.2 38 7-44 150-188 (222)
470 COG2230 Cfa Cyclopropane fatty 23.9 39 0.00085 31.7 1.2 39 366-405 80-121 (283)
471 PRK12827 short chain dehydroge 23.8 3.3E+02 0.0071 24.4 7.4 37 1-42 1-37 (249)
472 TIGR02329 propionate_PrpR prop 23.7 5.5E+02 0.012 26.7 9.6 29 117-148 144-172 (526)
473 PLN02948 phosphoribosylaminoim 23.7 3.5E+02 0.0075 28.6 8.2 119 293-461 449-569 (577)
474 PRK14476 nitrogenase molybdenu 23.7 5.3E+02 0.011 26.3 9.3 25 118-145 371-395 (455)
475 PF00070 Pyr_redox: Pyridine n 23.7 1.2E+02 0.0025 22.0 3.5 22 23-44 10-31 (80)
476 COG0771 MurD UDP-N-acetylmuram 23.6 1.3E+02 0.0027 30.6 4.7 32 7-43 7-38 (448)
477 PRK05858 hypothetical protein; 23.5 4.7E+02 0.01 27.3 9.2 24 363-386 71-100 (542)
478 COG0569 TrkA K+ transport syst 23.5 98 0.0021 28.0 3.7 31 8-43 1-31 (225)
479 COG2109 BtuR ATP:corrinoid ade 23.4 5.2E+02 0.011 22.8 10.7 101 8-129 29-133 (198)
480 TIGR00745 apbA_panE 2-dehydrop 23.4 80 0.0017 29.6 3.3 19 26-44 5-23 (293)
481 PF00289 CPSase_L_chain: Carba 23.3 1.3E+02 0.0027 23.8 3.8 68 296-376 12-89 (110)
482 COG0129 IlvD Dihydroxyacid deh 23.3 2E+02 0.0042 30.0 6.0 46 104-151 108-157 (575)
483 PRK13869 plasmid-partitioning 23.3 1.3E+02 0.0029 30.0 4.9 35 7-41 120-156 (405)
484 COG1090 Predicted nucleoside-d 23.3 6.4E+02 0.014 23.8 9.0 35 93-127 77-111 (297)
485 PRK06835 DNA replication prote 23.2 1.3E+02 0.0027 29.2 4.5 41 8-48 184-224 (329)
486 COG2084 MmsB 3-hydroxyisobutyr 23.2 1.1E+02 0.0024 28.9 4.0 32 8-44 1-32 (286)
487 PRK11269 glyoxylate carboligas 23.2 4.1E+02 0.0089 28.1 8.8 24 363-386 72-101 (591)
488 PRK13886 conjugal transfer pro 23.1 1.5E+02 0.0032 27.2 4.7 39 6-44 2-40 (241)
489 PRK00911 dihydroxy-acid dehydr 23.0 3.2E+02 0.007 28.4 7.5 47 103-151 96-146 (552)
490 PF02780 Transketolase_C: Tran 22.9 1.5E+02 0.0032 23.7 4.3 34 7-42 9-42 (124)
491 PF09334 tRNA-synt_1g: tRNA sy 22.8 65 0.0014 32.0 2.5 29 17-45 15-46 (391)
492 PRK01372 ddl D-alanine--D-alan 22.7 1.3E+02 0.0029 28.4 4.7 38 7-44 4-45 (304)
493 PLN02935 Bifunctional NADH kin 22.7 1.2E+02 0.0026 31.1 4.3 54 356-441 261-318 (508)
494 PF06506 PrpR_N: Propionate ca 22.6 99 0.0021 26.7 3.4 119 19-149 17-153 (176)
495 PRK05541 adenylylsulfate kinas 22.4 2.1E+02 0.0045 24.4 5.4 42 1-42 1-42 (176)
496 PRK06935 2-deoxy-D-gluconate 3 22.4 3.9E+02 0.0085 24.2 7.7 33 9-44 16-48 (258)
497 PRK14075 pnk inorganic polypho 22.4 1.1E+02 0.0024 28.3 3.9 27 357-385 41-68 (256)
498 PRK11914 diacylglycerol kinase 22.4 2.3E+02 0.005 26.9 6.2 82 282-388 12-97 (306)
499 TIGR01380 glut_syn glutathione 22.4 1.4E+02 0.0029 28.7 4.6 37 8-44 1-40 (312)
500 TIGR00853 pts-lac PTS system, 22.4 2.3E+02 0.0049 21.6 5.0 39 6-44 2-40 (95)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2e-73 Score=567.00 Aligned_cols=482 Identities=59% Similarity=1.066 Sum_probs=370.5
Q ss_pred CCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCC
Q 042970 3 SEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGC 82 (489)
Q Consensus 3 ~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (489)
++.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++..........+..++|+.+|+|...++++++.
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 44556899999999999999999999999999999999999988776655433211112249999999887656888765
Q ss_pred CCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhc
Q 042970 83 ENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDS 162 (489)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~ 162 (489)
+.....+...+...+......+.+.+.+++++...++||||+|.+..|+..+|+++|||++.|++++++.+..+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 54333332234445556666677888888876335789999999999999999999999999999999887765433222
Q ss_pred ccCCCCCCCCccccCCCCCCCccccccCCC-CC-CCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCce
Q 042970 163 KVHENVTSDSEYFKVPGLPDQIEFTKVQLP-IF-PSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKV 240 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~ 240 (489)
........+..++.+|++|....++..+++ ++ .......+...+.+....++++++|||++||+.++++++..+++++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v 243 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKV 243 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcE
Confidence 211112222345668998865557788888 44 3233444444444344567799999999999999999987777789
Q ss_pred EEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCC
Q 042970 241 WCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGN 320 (489)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 320 (489)
+.|||++.......+...+......++.+|.+|||.+++++||||||||.....++++.+++.+|+.++++|||+++...
T Consensus 244 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~ 323 (491)
T PLN02534 244 WCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGE 323 (491)
T ss_pred EEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 99999975322110000011111112457999999998889999999999999999999999999999999999998432
Q ss_pred chhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHH
Q 042970 321 KLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVE 400 (489)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e 400 (489)
...+..++++|++|.+++.+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++|
T Consensus 324 ~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e 403 (491)
T PLN02534 324 KHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVE 403 (491)
T ss_pred cccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHH
Confidence 11111122268899888888899999999999999999999999999999999999999999999999999999999989
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDD-GEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQD 479 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 479 (489)
.+|+|+++....+..|+.+++.+..+++++|+++|+++|.+ +++++.+|+||++|++++++++++||||.+++++||++
T Consensus 404 ~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~ 483 (491)
T PLN02534 404 VLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQD 483 (491)
T ss_pred hhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999998644333333221112248999999999999973 57889999999999999999999999999999999999
Q ss_pred HHcCC
Q 042970 480 IMQQP 484 (489)
Q Consensus 480 ~~~~~ 484 (489)
|.++.
T Consensus 484 i~~~~ 488 (491)
T PLN02534 484 VLKQQ 488 (491)
T ss_pred HHHHh
Confidence 98653
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-69 Score=541.43 Aligned_cols=456 Identities=34% Similarity=0.606 Sum_probs=353.9
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
+++|||++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+... ..++++++.+|+|.. ++++++.+..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcCh
Confidence 47999999999999999999999999999999999999998877654421 123689999887764 4777776544
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccC
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVH 165 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~ 165 (489)
...+ .+....+..+.....+.+.+++++.+.+++|||+|.+..|+..+|+++|||++.|++++++.+.++.++......
T Consensus 83 ~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 83 KDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 3322 133344556666677777777776435789999999999999999999999999999999999988876543211
Q ss_pred CC-CCCCCccc---cCCCCCCCccccccCCC-CCCC----CChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhc
Q 042970 166 EN-VTSDSEYF---KVPGLPDQIEFTKVQLP-IFPS----DDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAK 236 (489)
Q Consensus 166 ~~-~~~~~~~~---~~p~~p~~~~~~~~~l~-~~~~----~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~ 236 (489)
.. ...+...+ .+|+++. ++..+++ ++.. ......+.+.......++++++|||++||+.++++++..+
T Consensus 162 ~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 162 KINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred cccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 11 01111122 3577765 7778888 4431 1122233333333456788999999999999999998766
Q ss_pred C-CceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEE
Q 042970 237 Q-GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWV 315 (489)
Q Consensus 237 ~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~ 315 (489)
+ ++++.|||+++...........+...+..+++|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||+
T Consensus 239 ~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5 689999999754321000000111111235689999999988899999999999999999999999999999999999
Q ss_pred EecCCch-hhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhh
Q 042970 316 TRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCN 394 (489)
Q Consensus 316 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n 394 (489)
++..... .+... +|.+|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 319 ~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 319 VKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred ECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 9753221 11223 88899888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 042970 395 EKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQ 474 (489)
Q Consensus 395 a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (489)
|+++++++|+|+++... .++..+.++|.++|+++|. +++.||+||+++++.+++++++||||.++++
T Consensus 397 a~~v~~~~gvG~~~~~~----------~~~~~~~~~v~~~v~~~m~---~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~ 463 (477)
T PLN02863 397 ASLLVDELKVAVRVCEG----------ADTVPDSDELARVFMESVS---ENQVERERAKELRRAALDAIKERGSSVKDLD 463 (477)
T ss_pred HHHHHHhhceeEEeccC----------CCCCcCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 99986689999998532 0124689999999999994 2359999999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 042970 475 LFFQDIMQQPT 485 (489)
Q Consensus 475 ~~~~~~~~~~~ 485 (489)
+|+++|.+.-.
T Consensus 464 ~~v~~i~~~~~ 474 (477)
T PLN02863 464 GFVKHVVELGL 474 (477)
T ss_pred HHHHHHHHhcc
Confidence 99999987643
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.6e-69 Score=542.09 Aligned_cols=468 Identities=44% Similarity=0.803 Sum_probs=353.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhh--hCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAV--QSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
++|||++|+|++||++|++.||+.|++|||+|||++++.+...+++.+.... ..+..+.+..+++|..+++++++.+.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5799999999999999999999999999999999999988877666543221 11113466667766554566665433
Q ss_pred CCCC------CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhh
Q 042970 85 FDML------PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHI 158 (489)
Q Consensus 85 ~~~~------~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~ 158 (489)
.... ....+...+......+.+.+.+++++ .++||||+|.+..|+..+|+++|||++.|++++++.+..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHH
Confidence 3211 01133444555666788888888887 789999999999999999999999999999999887776554
Q ss_pred hhhcccCCCCCCCCccccCCCCCCCccccccCCC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcC
Q 042970 159 LRDSKVHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQ 237 (489)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~ 237 (489)
..................+|++|..+.++..+++ .-....+..+.....+...+++++++||+++||+.+.++++...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~ 242 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVA 242 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccC
Confidence 4322211111111123347888754445555555 322222344444555567788899999999999998888877766
Q ss_pred CceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEe
Q 042970 238 GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTR 317 (489)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 317 (489)
.++++|||+........+...+....+..+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||+++
T Consensus 243 ~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~ 322 (482)
T PLN03007 243 KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVR 322 (482)
T ss_pred CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 78999999865432110000011112223578999999998899999999999998899999999999999999999998
Q ss_pred cCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHH
Q 042970 318 VGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKL 397 (489)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 397 (489)
......+...+ +|++|.+++.+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 323 ~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~ 401 (482)
T PLN03007 323 KNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKL 401 (482)
T ss_pred cCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHH
Confidence 64321111122 88899999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 398 IVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 398 v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
+++.+++|+.+.....+. -....+++++|+++|+++|.| ++++.||+||+++++.+++++++||||++++++|+
T Consensus 402 ~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v 475 (482)
T PLN03007 402 VTQVLRTGVSVGAKKLVK-----VKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFM 475 (482)
T ss_pred HHHhhcceeEeccccccc-----cccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 876677777663210000 001258999999999999986 57899999999999999999999999999999999
Q ss_pred HHHHcC
Q 042970 478 QDIMQQ 483 (489)
Q Consensus 478 ~~~~~~ 483 (489)
+.+.+-
T Consensus 476 ~~~~~~ 481 (482)
T PLN03007 476 EELNSR 481 (482)
T ss_pred HHHHhc
Confidence 998753
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.8e-68 Score=524.68 Aligned_cols=436 Identities=27% Similarity=0.461 Sum_probs=333.6
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCC
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (489)
|+...+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+... .. ....+++|..+| +++++
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCCCc
Confidence 7767778999999999999999999999999999999999999976521 11 111368888877 45665
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhc----CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ----SPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCL 156 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~ 156 (489)
+.... .....+ +......+...+.+++++. ..+++|||+|.+..|+..+|+++|||++.|++++++.+.++
T Consensus 69 ~~~~~--~~~~~~---~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~ 143 (451)
T PLN02410 69 SDFKN--LGPIEF---LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCR 143 (451)
T ss_pred ccccc--cCHHHH---HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHH
Confidence 31111 111122 2222223344455554432 24679999999999999999999999999999999988777
Q ss_pred hhhhhccc------CCCCCCCCccccCCCCCCCccccccCCC-CCCCC--ChHHHHHHHHHhcccCcEEEecChhhhhhH
Q 042970 157 HILRDSKV------HENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPSD--DMKDINEQMLAADKKTFGIIINTVEELESA 227 (489)
Q Consensus 157 ~~~~~~~~------~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~--~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~ 227 (489)
.++..... ..... ......+|++++ ++..+++ +.... .....+.... ...+++++++|||++||+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~ 218 (451)
T PLN02410 144 SVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESS 218 (451)
T ss_pred HHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHH
Confidence 65432111 01110 112345788776 6667777 43211 1222222221 3467889999999999999
Q ss_pred HHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh
Q 042970 228 YFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA 307 (489)
Q Consensus 228 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~ 307 (489)
++++++..+++++++|||++...... ...+..+.+|.+|||.+++++||||||||....+.+++.+++.+|+.
T Consensus 219 ~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~ 291 (451)
T PLN02410 219 SLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDS 291 (451)
T ss_pred HHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHh
Confidence 99999877777999999997543210 01111245789999999888999999999999999999999999999
Q ss_pred CCCCEEEEEecCCc-hhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecC
Q 042970 308 SKKPFIWVTRVGNK-LEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWP 386 (489)
Q Consensus 308 ~~~~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 386 (489)
++.+|||+++.+.. ..+..+. +|++|.++++ +|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 292 s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P 369 (451)
T PLN02410 292 SNQQFLWVIRPGSVRGSEWIES-LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP 369 (451)
T ss_pred cCCCeEEEEccCcccccchhhc-CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc
Confidence 99999999984321 0111111 7889988875 5567779999999999999999999999999999999999999999
Q ss_pred CcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhC
Q 042970 387 LFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEG 466 (489)
Q Consensus 387 ~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (489)
++.||+.||+++++.+|+|+.+. . .+++++|+++|+++|.|+ +++.||++|+++++++++++++|
T Consensus 370 ~~~DQ~~na~~~~~~~~~G~~~~-~-------------~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~~~g 434 (451)
T PLN02410 370 FSSDQKVNARYLECVWKIGIQVE-G-------------DLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASVISG 434 (451)
T ss_pred ccccCHHHHHHHHHHhCeeEEeC-C-------------cccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999976679999996 3 589999999999999875 48899999999999999999999
Q ss_pred CChHHHHHHHHHHHHc
Q 042970 467 GSSYNNIQLFFQDIMQ 482 (489)
Q Consensus 467 g~~~~~~~~~~~~~~~ 482 (489)
|||.+++++|+++|..
T Consensus 435 GsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 435 GSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999864
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.8e-68 Score=524.40 Aligned_cols=436 Identities=26% Similarity=0.411 Sum_probs=341.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLA-NHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~-~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
++||+++|+|++||++|++.||+.|+ ++|++|||++++.+..++..... ..+++.++.+|.+..+ +++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCc--
Confidence 57999999999999999999999998 78999999999988765433211 1126899998876542 4431110
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhccc-
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKV- 164 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~- 164 (489)
+....+......+.+.+++++++...+|+|||+|.+..|+..+|+++|||++.|++++++.+..+.+.+....
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 1112233334456677778877643578999999999999999999999999999999988776665532111
Q ss_pred CCC-CCCCCccccCCCCCCCccccccCCC-CC-CCC-ChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhh-----
Q 042970 165 HEN-VTSDSEYFKVPGLPDQIEFTKVQLP-IF-PSD-DMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNA----- 235 (489)
Q Consensus 165 ~~~-~~~~~~~~~~p~~p~~~~~~~~~l~-~~-~~~-~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~----- 235 (489)
... ...+..++.+|+++. ++..+++ .+ ... .....+.+......+++++++|||++||+.++++++..
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 110 001112455788876 6777777 33 222 22333444445667899999999999999999988642
Q ss_pred -cCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEE
Q 042970 236 -KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 314 (489)
Q Consensus 236 -~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~ 314 (489)
.+++++.|||++...... ..+.+|.+|||.+++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 229 ~~~~~v~~VGPl~~~~~~~-----------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQSS-----------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccCCceEEecCccCCcCCC-----------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 135799999997532100 12467999999998889999999999999999999999999999999999
Q ss_pred EEecCCch---------------hhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhC
Q 042970 315 VTRVGNKL---------------EELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAG 379 (489)
Q Consensus 315 ~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 379 (489)
+++..... ....++ +|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~G 376 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGG 376 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcC
Confidence 99742110 111223 88999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 042970 380 VQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELA 459 (489)
Q Consensus 380 vP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~ 459 (489)
||||++|+++||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.| ++++.||++|+++++++
T Consensus 377 VP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~~-~~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 377 VPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMVE-EEGEEMRRKVKKLRDTA 444 (481)
T ss_pred CCEEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH
Confidence 99999999999999999995599999999753 1258999999999999986 47889999999999999
Q ss_pred HHHHh--hCCChHHHHHHHHHHHHc
Q 042970 460 KRALE--EGGSSYNNIQLFFQDIMQ 482 (489)
Q Consensus 460 ~~~~~--~gg~~~~~~~~~~~~~~~ 482 (489)
+++++ +||||.+++++|++++..
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHH
Confidence 99994 699999999999999864
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-67 Score=522.13 Aligned_cols=435 Identities=24% Similarity=0.368 Sum_probs=339.6
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
..++||+++|+|++||++|+++||+.|+++||+|||++++.+...+.+.. ....++.+..++.+.. ++++++.+.
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~ 76 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAET 76 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCccc
Confidence 45789999999999999999999999999999999999887666554321 1122577877766532 366665432
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhccc
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKV 164 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~ 164 (489)
..... .+....+....+...+.+++++++ .++||||+| ++.|+..+|+++|||++.|+++++..+. +.+...
T Consensus 77 ~~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 77 TSDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred ccchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 21111 133344556667788889999988 789999999 6789999999999999999999988654 333211
Q ss_pred CCCCCCCCccccCCCCCCC-ccccccCCC-CCCCCC-hHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceE
Q 042970 165 HENVTSDSEYFKVPGLPDQ-IEFTKVQLP-IFPSDD-MKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVW 241 (489)
Q Consensus 165 ~~~~~~~~~~~~~p~~p~~-~~~~~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~ 241 (489)
... ...+|++|.. +.++..+++ +..... +..+..++.+...+++++++|||++||+.+++++...++++++
T Consensus 149 -~~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~ 222 (442)
T PLN02208 149 -GKL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVL 222 (442)
T ss_pred -ccc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEE
Confidence 111 1235788752 335666776 421111 3333434445567899999999999999999999888778999
Q ss_pred EeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCc
Q 042970 242 CIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNK 321 (489)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~ 321 (489)
.|||++...... ...+.+|.+|||.+++++||||||||+..++.+++.+++.+++..+.+++|+++.+..
T Consensus 223 ~vGpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~ 292 (442)
T PLN02208 223 LTGPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRG 292 (442)
T ss_pred EEeecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 999997542200 0135789999999988899999999999999999999999998889999998875421
Q ss_pred hhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHH
Q 042970 322 LEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEV 401 (489)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~ 401 (489)
.....++ +|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 293 ~~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~ 371 (442)
T PLN02208 293 SSTVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE 371 (442)
T ss_pred ccchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH
Confidence 1111123 899999999999999999999999999999999999999999999999999999999999999999998656
Q ss_pred hcceeEecccCCccccccccccccccHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 042970 402 LRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG-EERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 402 ~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
+|+|+.++..+ ++.+++++|+++|+++|+|+ ++++.+|++|+++++.+. +||||.+++++|++++
T Consensus 372 ~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 372 FEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred hceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 99999996430 12489999999999999876 578999999999999973 3789999999999999
Q ss_pred HcC
Q 042970 481 MQQ 483 (489)
Q Consensus 481 ~~~ 483 (489)
.++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 654
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-67 Score=526.01 Aligned_cols=451 Identities=29% Similarity=0.458 Sum_probs=346.5
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hHHHHHHHhhhCCCceEEEEeeCCcccC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHR----AIVTIVTTPVNAA----RLKTVLARAVQSGLQIRLVEIQFPWQEA 76 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rG----H~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (489)
|++.|||++|+|++||++|++.||+.|+.+| +.|||++++.+.. ++..........+.+++|+.+|.+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 4678999999999999999999999999997 7899999876532 3333322111122358999987432
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 042970 77 GLPQGCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCL 156 (489)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~ 156 (489)
.+.+.+ .....+........+.+++++++...+++|||+|.+..|+..+|+++|||++.|+++++..+.++
T Consensus 78 -~p~~~e--------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 -PPTDAA--------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred -CCCccc--------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 122211 11122333444566777787776323679999999999999999999999999999999988887
Q ss_pred hhhhhcccCCC--CCCCCccccCCCCCCCccccccCCC-CCCCC--ChHHHHHHHHHhcccCcEEEecChhhhhhHHHHH
Q 042970 157 HILRDSKVHEN--VTSDSEYFKVPGLPDQIEFTKVQLP-IFPSD--DMKDINEQMLAADKKTFGIIINTVEELESAYFRE 231 (489)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~--~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~ 231 (489)
.+.+....... ......++.+|+++. ++..+++ ++... .....+....+...+++++++|||++||+.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 77643211100 111012345788876 7888888 44322 1122333334456788999999999999999999
Q ss_pred HHhhc------CCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHH
Q 042970 232 YKNAK------QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGL 305 (489)
Q Consensus 232 ~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al 305 (489)
++... .++++.|||+....... . ....+.+|.+||+.+++++||||||||+...+.+++.+++.+|
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~-------~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTP-------P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccC-------C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 87642 15899999997432110 0 0113578999999998899999999999889999999999999
Q ss_pred HhCCCCEEEEEecCCc-------hhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHh
Q 042970 306 EASKKPFIWVTRVGNK-------LEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISA 378 (489)
Q Consensus 306 ~~~~~~~v~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~ 378 (489)
+.++++|||+++.... ..+..++ +|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~ 376 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWH 376 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHc
Confidence 9999999999985321 0112233 7889999998899999999999999999999999999999999999999
Q ss_pred CCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCCh-hHHHHHHHHHHHHH
Q 042970 379 GVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGE-ERDVRRKRAKEFEE 457 (489)
Q Consensus 379 GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~-~~~~~~~~a~~l~~ 457 (489)
|||||++|+++||+.||+++++++|+|+.+...+ ++++.+++++|+++|+++|.|++ +++.+|++|+++++
T Consensus 377 GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 377 GVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred CCCEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998766799999985320 01124799999999999998876 59999999999999
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHcCCCCC
Q 042970 458 LAKRALEEGGSSYNNIQLFFQDIMQQPTSE 487 (489)
Q Consensus 458 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 487 (489)
++++++++||||.+++++|+++|.+.+..|
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~~~~ 478 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGAVAP 478 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999988665
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.2e-67 Score=523.03 Aligned_cols=455 Identities=27% Similarity=0.443 Sum_probs=340.1
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH--Hh--hhCC-CceEEEEeeCCccc
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA--RA--VQSG-LQIRLVEIQFPWQE 75 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~i~~~~~~ 75 (489)
|+|+..+.|||++|+|++||++|++.||+.|+.+|..|||++++.+..++..... .. ...+ ..+.|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 8999889999999999999999999999999999999999999987765543110 00 0001 124454443
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhc---CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHH
Q 042970 76 AGLPQGCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ---SPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFC 152 (489)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~ 152 (489)
++++++.+.. . +....+........+.+++++++. ..+++|||+|.+..|+..+|+++|||.+.|++++++.
T Consensus 76 dglp~~~~~~---~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~ 150 (480)
T PLN02555 76 DGWAEDDPRR---Q--DLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCAC 150 (480)
T ss_pred CCCCCCcccc---c--CHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHH
Confidence 4666543321 1 111122222224455666666542 1335999999999999999999999999999999998
Q ss_pred HHHHhhhhhcc-cCCCCCCCCccccCCCCCCCccccccCCC-CCCCC-Ch---HHHHHHHHHhcccCcEEEecChhhhhh
Q 042970 153 LFCLHILRDSK-VHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPSD-DM---KDINEQMLAADKKTFGIIINTVEELES 226 (489)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~-~~---~~~~~~~~~~~~~~~~~l~~t~~~l~~ 226 (489)
+..+.+..... .......+..++.+|++|. ++..+++ ++... .. ...+.+......+++++++|||++||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 227 (480)
T PLN02555 151 FSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEK 227 (480)
T ss_pred HHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhH
Confidence 88877663211 1111111123456899986 7888888 55321 11 222333344567888999999999999
Q ss_pred HHHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH
Q 042970 227 AYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE 306 (489)
Q Consensus 227 ~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~ 306 (489)
.+++.++... + ++.|||+......... ..+...+..+.+|.+||+.+++++||||||||+...+.+++.+++.+++
T Consensus 228 ~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~ 303 (480)
T PLN02555 228 EIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVL 303 (480)
T ss_pred HHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHH
Confidence 9999886643 4 9999999754321100 0011112235689999999988899999999999999999999999999
Q ss_pred hCCCCEEEEEecCCchhhh-hhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeec
Q 042970 307 ASKKPFIWVTRVGNKLEEL-EKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (489)
Q Consensus 307 ~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 385 (489)
.++++|||+++........ ..+ +|+++.++. .+|+++++|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 304 ~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 304 NSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCF 381 (480)
T ss_pred hcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeC
Confidence 9999999998743111000 112 787887655 4677888999999999999999999999999999999999999999
Q ss_pred CCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhh
Q 042970 386 PLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEE 465 (489)
Q Consensus 386 P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (489)
|+++||+.||+++++.+|+|+++...+ .....+++++|+++|+++|.+ ++++.+|+||++|++++++++++
T Consensus 382 P~~~DQ~~Na~~~~~~~gvGv~l~~~~--------~~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~~e 452 (480)
T PLN02555 382 PQWGDQVTDAVYLVDVFKTGVRLCRGE--------AENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAVAE 452 (480)
T ss_pred CCccccHHHHHHHHHHhCceEEccCCc--------cccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999976779999995210 001258999999999999975 67899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcC
Q 042970 466 GGSSYNNIQLFFQDIMQQ 483 (489)
Q Consensus 466 gg~~~~~~~~~~~~~~~~ 483 (489)
||||.+++++||+++.+.
T Consensus 453 gGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 453 GGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999999875
No 9
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.9e-67 Score=515.14 Aligned_cols=435 Identities=26% Similarity=0.411 Sum_probs=339.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
.++|||++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. .. ...++.+..++.|.. ++++++.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~--~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NL--FPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--cc--CCCCceEEEEECCCc-CCCCCccccc
Confidence 468999999999999999999999999999999999999876655442 10 111233444444432 4777665433
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccC
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVH 165 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~ 165 (489)
...+. .....+..+.....+.+.+++++ .++||||+| +..|+..+|+++|||++.|++++++.+.++.. . .
T Consensus 79 ~~~~~-~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~ 149 (453)
T PLN02764 79 SEIPV-TSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----G 149 (453)
T ss_pred ccCCh-hHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----c
Confidence 32331 33445566666778889999988 688999999 57899999999999999999999988877652 1 1
Q ss_pred CCCCCCCccccCCCCCCC-ccccccCCC-CCC--C----CChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcC
Q 042970 166 ENVTSDSEYFKVPGLPDQ-IEFTKVQLP-IFP--S----DDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQ 237 (489)
Q Consensus 166 ~~~~~~~~~~~~p~~p~~-~~~~~~~l~-~~~--~----~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~ 237 (489)
..+ ..++|++|.. +.++.++++ +.. . ..+..+..++.+...+++++++|||++||+.++++++...+
T Consensus 150 ~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 150 GEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred ccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC
Confidence 111 1234777642 124555555 321 1 11334445554556788899999999999999999977555
Q ss_pred CceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEe
Q 042970 238 GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTR 317 (489)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 317 (489)
++++.|||++...... ...+.+|.+|||.+++++||||||||+..++.+++.+++.+|+..+.+|+|+++
T Consensus 225 ~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 225 KKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred CcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 7899999997532100 012468999999999999999999999999999999999999999999999998
Q ss_pred cCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHH
Q 042970 318 VGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKL 397 (489)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 397 (489)
..........+ +|++|+++++..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 295 ~~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~ 373 (453)
T PLN02764 295 PPRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRL 373 (453)
T ss_pred CCCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 53211111223 89999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 042970 398 IVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG-EERDVRRKRAKEFEELAKRALEEGGSSYNNIQLF 476 (489)
Q Consensus 398 v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (489)
+++.+|+|+.+..++ .+.+++++|+++|+++|+++ ++++.+|++|+++++++ ++||||.+++++|
T Consensus 374 l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~----~~~GSS~~~l~~l 439 (453)
T PLN02764 374 LSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL----ASPGLLTGYVDNF 439 (453)
T ss_pred HHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----HhcCCHHHHHHHH
Confidence 965689998875320 01589999999999999876 67899999999999998 4689999999999
Q ss_pred HHHHHcCC
Q 042970 477 FQDIMQQP 484 (489)
Q Consensus 477 ~~~~~~~~ 484 (489)
|++++...
T Consensus 440 v~~~~~~~ 447 (453)
T PLN02764 440 IESLQDLV 447 (453)
T ss_pred HHHHHHhc
Confidence 99998865
No 10
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.3e-67 Score=515.61 Aligned_cols=431 Identities=26% Similarity=0.435 Sum_probs=331.6
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCC-C
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGC-E 83 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ 83 (489)
.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|+.+| ++++++. +
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 3467999999999999999999999999999999999999776544221 12369999987 4666532 2
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhc--CCCC-cEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ--SPKP-CCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~-D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
... +....+........+.+++++++. ..+| ||||+|.+..|+..+|+++|||++.|++++++.+..+.+..
T Consensus 72 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~ 146 (449)
T PLN02173 72 SAG-----SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY 146 (449)
T ss_pred ccc-----CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH
Confidence 111 112222223335566777777652 1245 99999999999999999999999999999888776554321
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCC-CCCC-CC---hHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhh
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPS-DD---MKDINEQMLAADKKTFGIIINTVEELESAYFREYKNA 235 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~-~~---~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~ 235 (489)
. .. ....+.+|++|. ++..+++ ++.. .. ....+.+..+...+++++++|||++||+.++++++..
T Consensus 147 ~---~~----~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 147 I---NN----GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred h---cc----CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 1 00 112355788876 6788888 5432 11 2232333345567899999999999999999988653
Q ss_pred cCCceEEeCcccCCCccchhh-hhcCC--CCC--CCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 042970 236 KQGKVWCIGPVSLCNKESIDK-VERGN--KAA--IDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKK 310 (489)
Q Consensus 236 ~~~~~~~vGp~~~~~~~~~~~-~~~~~--~~~--~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~ 310 (489)
++++.|||+++........ ...+. ..+ ..+++|..||+.+++++||||||||+...+.+++.+++.+| .+.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 4799999997431100000 00010 011 12456999999998899999999999999999999999999 778
Q ss_pred CEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCc
Q 042970 311 PFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGD 390 (489)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 390 (489)
+|+|+++..... + +|++|.+++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 293 ~flWvvr~~~~~-----~-lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 366 (449)
T PLN02173 293 SYLWVVRASEES-----K-LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTD 366 (449)
T ss_pred CEEEEEeccchh-----c-ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhc
Confidence 899999753211 1 7888988887789999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChH
Q 042970 391 QFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSY 470 (489)
Q Consensus 391 Q~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 470 (489)
|+.||+++++.+|+|+.+...+ .++.++.++|+++|+++|.| ++++.+|+||+++++++++++++||||.
T Consensus 367 Q~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS~ 436 (449)
T PLN02173 367 QPMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGSTD 436 (449)
T ss_pred chHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999976679999986431 11247999999999999986 5688999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042970 471 NNIQLFFQDIM 481 (489)
Q Consensus 471 ~~~~~~~~~~~ 481 (489)
+++++|++++.
T Consensus 437 ~~l~~~v~~~~ 447 (449)
T PLN02173 437 ININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.9e-67 Score=514.05 Aligned_cols=440 Identities=28% Similarity=0.440 Sum_probs=340.9
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHH--HHHHHhhhCCCceEEEEeeCCcccCCC-CC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVTTPVNAARLK--TVLARAVQSGLQIRLVEIQFPWQEAGL-PQ 80 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 80 (489)
|.+.||+++|+|++||++|++.||+.|+++ |..|||++++.+...+. ....... ..++++++.+|++.. +++ +.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~ 78 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEP 78 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCC
Confidence 346799999999999999999999999987 99999998887664431 1111111 112599999986532 132 11
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCC-cEEEecchHHHHHHHhhh
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVP-RIVFHGFSCFCLFCLHIL 159 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP-~v~l~~~~~~~~~~~~~~ 159 (489)
+ . +....+......+.+.+++++++...+++|||+|.+.+|+..+|+++||| .+.+++++++.+.++.+.
T Consensus 79 ~--------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 79 D--------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred C--------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 1 0 22234455555677888888887434789999999999999999999999 577888888777666655
Q ss_pred hhcc-cCCC-CCCCCccccCCCCCCCccccccCCC-CC-CCCC--hHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHH
Q 042970 160 RDSK-VHEN-VTSDSEYFKVPGLPDQIEFTKVQLP-IF-PSDD--MKDINEQMLAADKKTFGIIINTVEELESAYFREYK 233 (489)
Q Consensus 160 ~~~~-~~~~-~~~~~~~~~~p~~p~~~~~~~~~l~-~~-~~~~--~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~ 233 (489)
+... .... ......++.+|++|+ ++..+++ ++ .... +..+. .......+++++++|||++||+..++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~ 225 (470)
T PLN03015 150 PVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALR 225 (470)
T ss_pred hhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 3211 1111 001113456899986 7888888 44 2221 23333 33344788999999999999999999887
Q ss_pred hhc------CCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh
Q 042970 234 NAK------QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA 307 (489)
Q Consensus 234 ~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~ 307 (489)
..+ +++++.|||+...... ...+.+|.+|||.+++++||||||||...++.+++.+++.+|+.
T Consensus 226 ~~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~ 294 (470)
T PLN03015 226 EDMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLEL 294 (470)
T ss_pred hhcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHh
Confidence 642 2569999999742110 01245799999999889999999999999999999999999999
Q ss_pred CCCCEEEEEecCCc--------hhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhC
Q 042970 308 SKKPFIWVTRVGNK--------LEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAG 379 (489)
Q Consensus 308 ~~~~~v~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 379 (489)
++++|||+++.... ..+..++ +|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 295 s~~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~G 373 (470)
T PLN03015 295 SGQRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKG 373 (470)
T ss_pred CCCcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcC
Confidence 99999999974211 0112234 89999999988899999999999999999999999999999999999999
Q ss_pred CcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHH
Q 042970 380 VQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDD-GEERDVRRKRAKEFEEL 458 (489)
Q Consensus 380 vP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~ 458 (489)
||||++|+++||+.||+++++.+|+|+++.... .++.+++++|+++|+++|.+ +++|+.+|+||++|+++
T Consensus 374 vP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~ 444 (470)
T PLN03015 374 VPIVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVS 444 (470)
T ss_pred CCEEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHH
Confidence 999999999999999999977999999995210 01268999999999999963 36899999999999999
Q ss_pred HHHHHhhCCChHHHHHHHHHHH
Q 042970 459 AKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 459 ~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
+++++++||||++++++|++++
T Consensus 445 a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 445 SERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHhcCCCcHHHHHHHHHHhc
Confidence 9999999999999999999986
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-66 Score=517.37 Aligned_cols=442 Identities=27% Similarity=0.440 Sum_probs=330.6
Q ss_pred CCCCC-CCcEEEEecCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCC
Q 042970 1 MASEA-SEFHILLLPFLAQGHLIPMFDMARL--LANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAG 77 (489)
Q Consensus 1 m~~~~-~~~~vl~~~~p~~GHv~P~l~La~~--L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 77 (489)
|++.. .+.|||++|+|++||++|++.||++ |++||++|||++++.+.+.+... .. ....+++..++ ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~---~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EK---PRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cC---CCCceEEEECC-----CC
Confidence 55543 4689999999999999999999999 55999999999999876654321 10 11245555544 45
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHh
Q 042970 78 LPQGCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLH 157 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~ 157 (489)
++++... .....+....+.+.+.+.+++++ .++||||+|.+..|+..+|+++|||.+.|++.++..+..+.
T Consensus 72 lp~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~ 142 (456)
T PLN02210 72 LPKDDPR-------APETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYY 142 (456)
T ss_pred CCCCccc-------CHHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHH
Confidence 6654321 11112222233456778888887 68999999999999999999999999999999988887766
Q ss_pred hhhhc-ccCCCCCCCCccccCCCCCCCccccccCCC-CCCC-CC--hHHHHHHHHHhcccCcEEEecChhhhhhHHHHHH
Q 042970 158 ILRDS-KVHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPS-DD--MKDINEQMLAADKKTFGIIINTVEELESAYFREY 232 (489)
Q Consensus 158 ~~~~~-~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~-~~--~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~ 232 (489)
+.... ..............+|+++. +...+++ ++.. .. +.....++.+....++++++|||++||+.+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 219 (456)
T PLN02210 143 RYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESM 219 (456)
T ss_pred hhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHH
Confidence 54221 11111111112345788875 6777777 4432 21 2233334444556788999999999999999988
Q ss_pred HhhcCCceEEeCcccCCCc--cchhhhhcCC--CCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 042970 233 KNAKQGKVWCIGPVSLCNK--ESIDKVERGN--KAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS 308 (489)
Q Consensus 233 ~~~~~~~~~~vGp~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~ 308 (489)
+. . +++++|||++.... ........++ ..+..+.+|.+||+.+++++||||||||....+.+++.+++.+|+.+
T Consensus 220 ~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~ 297 (456)
T PLN02210 220 AD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNR 297 (456)
T ss_pred hh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Confidence 76 3 68999999974211 0000000011 11234678999999998889999999999999999999999999999
Q ss_pred CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc
Q 042970 309 KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 388 (489)
+++|||+++...... .+.+|.++...++..+++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 298 ~~~flw~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 298 GVPFLWVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred CCCEEEEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 999999997532110 23445555433455678999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCC
Q 042970 389 GDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGS 468 (489)
Q Consensus 389 ~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (489)
.||+.||+++++.+|+|+.+...+ .++.+++++|+++|+++|.| ++|++||+||++|++.+++++++|||
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGS 441 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGS 441 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999964499999986420 01258999999999999975 56889999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 042970 469 SYNNIQLFFQDIM 481 (489)
Q Consensus 469 ~~~~~~~~~~~~~ 481 (489)
|.+++++|+++|.
T Consensus 442 S~~~l~~~v~~~~ 454 (456)
T PLN02210 442 SARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-66 Score=514.76 Aligned_cols=436 Identities=25% Similarity=0.393 Sum_probs=336.8
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
.+++|||++|+|++||++|++.||+.|+++|++|||++++.+...+.+... ..+++.|+.+++|.. ++++++.+.
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~ 76 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAET 76 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCcccc
Confidence 357899999999999999999999999999999999999977665544311 122588887776643 467766433
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhccc
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKV 164 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~ 164 (489)
...... .....+......+.+.+++++++ .+|||||+| +..|+..+|+++|||++.|+++++..+.++.+...
T Consensus 77 ~~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--- 149 (446)
T PLN00414 77 ASDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--- 149 (446)
T ss_pred cccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh---
Confidence 222221 22334556666777888888877 689999999 47899999999999999999999988877665211
Q ss_pred CCCCCCCCccccCCCCCCC-ccccccC--CC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCce
Q 042970 165 HENVTSDSEYFKVPGLPDQ-IEFTKVQ--LP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKV 240 (489)
Q Consensus 165 ~~~~~~~~~~~~~p~~p~~-~~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~ 240 (489)
.. ..++|++|.. +.++..+ ++ ++.. ....+.+..+...+++++++|||++||+.++++++..+++++
T Consensus 150 --~~-----~~~~pg~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 150 --EL-----GFPPPDYPLSKVALRGHDANVCSLFAN--SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred --hc-----CCCCCCCCCCcCcCchhhcccchhhcc--cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 00 1224666541 1122222 23 2221 123444455567789999999999999999999987666789
Q ss_pred EEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCC
Q 042970 241 WCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGN 320 (489)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 320 (489)
+.|||+.+..... .. ...+.+|.+|||.+++++||||||||....+.+++.+++.+|+.++.+|+|++....
T Consensus 221 ~~VGPl~~~~~~~-------~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 221 LLTGPMLPEPQNK-------SG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred EEEcccCCCcccc-------cC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 9999997532110 00 012457999999999999999999999999999999999999999999999997642
Q ss_pred chhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHH
Q 042970 321 KLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVE 400 (489)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e 400 (489)
...+...+ +|++|.++++..+.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 293 ~~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 293 GSSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred Ccccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 21112233 89999999998899999999999999999999999999999999999999999999999999999999976
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG-EERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQD 479 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 479 (489)
++|+|+.+...+ ++.+++++|+++++++|.|+ ++++.||++|+++++.+. ++||+|. .+++||++
T Consensus 372 ~~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss-~l~~~v~~ 437 (446)
T PLN00414 372 ELEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSG-YADKFVEA 437 (446)
T ss_pred HhCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHH-HHHHHHHH
Confidence 899999996320 12489999999999999865 568899999999999974 5588443 38999999
Q ss_pred HHcCC
Q 042970 480 IMQQP 484 (489)
Q Consensus 480 ~~~~~ 484 (489)
+.+..
T Consensus 438 ~~~~~ 442 (446)
T PLN00414 438 LENEV 442 (446)
T ss_pred HHHhc
Confidence 96654
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-66 Score=514.78 Aligned_cols=457 Identities=28% Similarity=0.460 Sum_probs=345.5
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
+.++.|||++|+|++||++|++.||+.|+.||+.|||++++.+..++..... ....+++++.+|+|.. +|++++.+
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~-dglp~~~~ 78 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSV-PGLPSSAE 78 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCcc-CCCCCCcc
Confidence 4457899999999999999999999999999999999999988766553211 1123699999998765 47776544
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcc
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSK 163 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~ 163 (489)
.....+. .....+....+.+.+.+++++++ .+++|||+|.+..|+..+|+++|||++.++++++..+..+.+.....
T Consensus 79 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 79 SSTDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred cccccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 3222211 11223445566778888999888 68999999999999999999999999999999998887765442211
Q ss_pred cCCCCCCCCccc-cCCCCCC---CccccccCCC-CCCC-C---ChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHh
Q 042970 164 VHENVTSDSEYF-KVPGLPD---QIEFTKVQLP-IFPS-D---DMKDINEQMLAADKKTFGIIINTVEELESAYFREYKN 234 (489)
Q Consensus 164 ~~~~~~~~~~~~-~~p~~p~---~~~~~~~~l~-~~~~-~---~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~ 234 (489)
.......+.... .+|++.+ .+.++..+++ ++.. . .....+.+......+++++++|||++||+.++++++.
T Consensus 156 ~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 156 EGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred hcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 111111111111 2454422 1235566777 4421 1 1122222333456778999999999999999999987
Q ss_pred hcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEE
Q 042970 235 AKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 314 (489)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~ 314 (489)
.++++++.|||+.+....... ........+.+|.+|||.+++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 666789999999653111000 00000001257999999998889999999999999999999999999999999999
Q ss_pred EEecCCch-hhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchh
Q 042970 315 VTRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFC 393 (489)
Q Consensus 315 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 393 (489)
+++..... ....++ +|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 313 v~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 313 VLRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred EEcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 99853211 111123 8999999998889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 042970 394 NEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNI 473 (489)
Q Consensus 394 na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 473 (489)
||+++ +++|+|+.++..+ .++.+++++|+++|+++|.| ++|++||+||+++++.+++. +.-.+++
T Consensus 392 Na~~v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~~----~~~~~~~ 456 (472)
T PLN02670 392 NTRLL-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGDM----DRNNRYV 456 (472)
T ss_pred HHHHH-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhCc----chhHHHH
Confidence 99999 5999999996431 01258999999999999986 56889999999999998744 5558999
Q ss_pred HHHHHHHHcCCCC
Q 042970 474 QLFFQDIMQQPTS 486 (489)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (489)
++|++++.+.+.+
T Consensus 457 ~~~~~~l~~~~~~ 469 (472)
T PLN02670 457 DELVHYLRENRSS 469 (472)
T ss_pred HHHHHHHHHhccc
Confidence 9999999888743
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.9e-66 Score=511.05 Aligned_cols=453 Identities=25% Similarity=0.452 Sum_probs=334.6
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHR--AIVTIVTTPVNA-ARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQG 81 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (489)
|.+.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...........++++|+.+|.... .++.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 4568999999999999999999999999998 999999998765 333332222111123699999983211 1110
Q ss_pred CCCCCCCCchhhHHHHHHHHhhc----hHHHHHHHhhc--CCC-CcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHH
Q 042970 82 CENFDMLPSIDLASKFFNSHSML----QLPFENLFSEQ--SPK-PCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLF 154 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~ll~~~--~~~-~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~ 154 (489)
.. .. +....+....... .+.+.+++++. +.+ ++|||+|.+..|+..+|+++|||.+.|+++++..+.
T Consensus 78 -~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GG---TQ--SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -cc---cc--CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 00 01 1222222332222 44566666542 113 499999999999999999999999999999998888
Q ss_pred HHhhhhhccc-CCCC--CCCCccccCCCCCCCccccccCCC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHH
Q 042970 155 CLHILRDSKV-HENV--TSDSEYFKVPGLPDQIEFTKVQLP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFR 230 (489)
Q Consensus 155 ~~~~~~~~~~-~~~~--~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~ 230 (489)
++.+...... .... +.....+.+|++++. ++..+++ ++........+.+......+++++++||+++||+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 7766532111 1111 111134568888322 7888888 55332212333344456788999999999999999998
Q ss_pred HHHh-hcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042970 231 EYKN-AKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK 309 (489)
Q Consensus 231 ~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~ 309 (489)
.++. ...++++.|||++........ ......+.+|.+|||.+++++||||||||....+.+++.+++.+|+.++
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 8865 234789999999764321110 0000124679999999988899999999999999999999999999999
Q ss_pred CCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcC
Q 042970 310 KPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG 389 (489)
Q Consensus 310 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 389 (489)
++|||+++..... ..+| +|++|+++.. +|..+++|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 305 ~~flW~~r~~~~~--~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~ 380 (468)
T PLN02207 305 YRFLWSLRTEEVT--NDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYA 380 (468)
T ss_pred CcEEEEEeCCCcc--cccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccc
Confidence 9999999853210 1123 7889987764 5567789999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCCh
Q 042970 390 DQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSS 469 (489)
Q Consensus 390 DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 469 (489)
||+.||+++++++|+|+++.... +...+..+++++|+++|+++|.+ ++++||+||+++++.+++++++||||
T Consensus 381 DQ~~Na~~~~~~~gvGv~~~~~~------~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS 452 (468)
T PLN02207 381 EQQLNAFLMVKELKLAVELKLDY------RVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSS 452 (468)
T ss_pred cchhhHHHHHHHhCceEEEeccc------ccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999998865699999874220 00001246999999999999962 46799999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 042970 470 YNNIQLFFQDIMQQPT 485 (489)
Q Consensus 470 ~~~~~~~~~~~~~~~~ 485 (489)
++++++||+++..-+|
T Consensus 453 ~~~l~~~v~~~~~~~~ 468 (468)
T PLN02207 453 FAAIEKFIHDVIGIKT 468 (468)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999986554
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.7e-65 Score=509.93 Aligned_cols=442 Identities=30% Similarity=0.463 Sum_probs=333.7
Q ss_pred CCCCCcEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCC
Q 042970 3 SEASEFHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 3 ~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (489)
|+..++||+++|+|++||++|++.||++|++| ||+|||++++.+...+.... ...+++|+.+|. ++++
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCC
Confidence 55678999999999999999999999999999 99999999998776655431 123699998872 3343
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
+.... . +....+....+.+.+.+.+++++...++||||+|.++.|+..+|+++|||++.++++++..+..+.+..
T Consensus 76 ~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 76 ELVRA---A--DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred ccccc---c--CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 32111 1 222222223334666777777763347899999999999999999999999999999998777766653
Q ss_pred hcccCCCCCCC-----Cc-cccCCCCCCCccccccCCC-CCCCCC--hHHHHHHHHHhcccCcEEEecChhhhhhHHHHH
Q 042970 161 DSKVHENVTSD-----SE-YFKVPGLPDQIEFTKVQLP-IFPSDD--MKDINEQMLAADKKTFGIIINTVEELESAYFRE 231 (489)
Q Consensus 161 ~~~~~~~~~~~-----~~-~~~~p~~p~~~~~~~~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~ 231 (489)
..........+ .. ...+|+++. ++..+++ ++.... ....+........+++++++|||++||+.++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 22111000100 01 113677665 6777777 543222 122333344445677899999999999999999
Q ss_pred HHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCC
Q 042970 232 YKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKP 311 (489)
Q Consensus 232 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~ 311 (489)
++..++++++.|||+.+........ ........+.++..|++.+++++||||||||+...+.+++++++.+|+.++++
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~~--~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDNS--SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHhhcCCceEEecCcccccccCCCc--cccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 9887777899999996532110000 00000012358999999988889999999999988899999999999999999
Q ss_pred EEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcc
Q 042970 312 FIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQ 391 (489)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 391 (489)
|||+++... .++.+.. .+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 306 ~lw~~~~~~-----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ 373 (459)
T PLN02448 306 FLWVARGEA-----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ 373 (459)
T ss_pred EEEEEcCch-----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc
Confidence 999876431 1222221 3578888999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHHHhhCCChH
Q 042970 392 FCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG-EERDVRRKRAKEFEELAKRALEEGGSSY 470 (489)
Q Consensus 392 ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 470 (489)
+.||+++++.+|+|+.+.... ..+..+++++|+++|+++|+|+ +++++||+||++|++.+++++++||||.
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~ 445 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSD 445 (459)
T ss_pred hhhHHHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999974589998885320 0012579999999999999875 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 042970 471 NNIQLFFQDIMQQP 484 (489)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (489)
+++++|+++|.+.|
T Consensus 446 ~~l~~~v~~~~~~~ 459 (459)
T PLN02448 446 TNLDAFIRDISQGR 459 (459)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999998653
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2e-65 Score=505.22 Aligned_cols=434 Identities=28% Similarity=0.467 Sum_probs=324.2
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHR--AIVTI--VTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (489)
|.+.|||++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.+.........++++|+.+|.+. +.+.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~ 77 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSS 77 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCC
Confidence 3467899999999999999999999999998 55655 444443332222111111122369999987432 1111
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcC--CCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhh
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQS--PKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHI 158 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~ 158 (489)
... .. .+....+..........+.+++++.. .+++|||+|.+..|+..+|+++|||++.|++++++.+..+.+
T Consensus 78 ~~~--~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 78 SST--SR---HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred ccc--cc---cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 111 11 11122233333345556666666531 346999999999999999999999999999999998888877
Q ss_pred hhhcccCC-CCC-CCCccccCCCCCCCccccccCCC-CCCCC--ChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHH
Q 042970 159 LRDSKVHE-NVT-SDSEYFKVPGLPDQIEFTKVQLP-IFPSD--DMKDINEQMLAADKKTFGIIINTVEELESAYFREYK 233 (489)
Q Consensus 159 ~~~~~~~~-~~~-~~~~~~~~p~~p~~~~~~~~~l~-~~~~~--~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~ 233 (489)
.+...... ... ....++.+|++|. ++..+++ +.... .....+.+..+...+++++++|||++||+.++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 153 LPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred HHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 54311110 000 1112356788886 7888888 55322 123344445556677889999999999999999987
Q ss_pred hhcC-CceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCE
Q 042970 234 NAKQ-GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPF 312 (489)
Q Consensus 234 ~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~ 312 (489)
..+. ++++.|||++...... . .. . ..+.+|.+|||.+++++||||||||+..++.+++.+++.+|+.++++|
T Consensus 230 ~~~~~~~v~~vGPl~~~~~~~-~----~~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~F 302 (451)
T PLN03004 230 EELCFRNIYPIGPLIVNGRIE-D----RN-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRF 302 (451)
T ss_pred hcCCCCCEEEEeeeccCcccc-c----cc-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 6543 6899999997432100 0 00 1 124579999999988999999999999999999999999999999999
Q ss_pred EEEEecCCch-h---hhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc
Q 042970 313 IWVTRVGNKL-E---ELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 313 v~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 388 (489)
||+++..... . ....+ +|++|+++++..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 303 lW~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~ 381 (451)
T PLN03004 303 LWVVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLY 381 (451)
T ss_pred EEEEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccc
Confidence 9999853110 0 12223 78899999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCC
Q 042970 389 GDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGS 468 (489)
Q Consensus 389 ~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (489)
.||+.||+++++++|+|++++..+ ++.+++++|+++|+++|+|+ .||++|+++++..++++++|||
T Consensus 382 ~DQ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGS 447 (451)
T PLN03004 382 AEQRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGS 447 (451)
T ss_pred ccchhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999964689999996430 12579999999999999876 9999999999999999999999
Q ss_pred hHH
Q 042970 469 SYN 471 (489)
Q Consensus 469 ~~~ 471 (489)
|.+
T Consensus 448 S~~ 450 (451)
T PLN03004 448 SHT 450 (451)
T ss_pred CCC
Confidence 875
No 18
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6e-65 Score=505.72 Aligned_cols=426 Identities=26% Similarity=0.420 Sum_probs=325.2
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
+..+.|||++|+|++||++|++.||+.|+.+|++|||++++.+..++.+... ..++++|+.+|. +++++.
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~~- 72 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDDP- 72 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCCc-
Confidence 3446799999999999999999999999999999999999987765544321 123689998862 333211
Q ss_pred CCCCCCchhhHHHHHHHHh-hchHHHHHHHhhcC--CCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHS-MLQLPFENLFSEQS--PKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
+. +.. .+..... .+.+.++++++++. .+++|||+|.+..|+..+|+++|||++.|+++++..+..+.+.+
T Consensus 73 -----~~-~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~ 145 (448)
T PLN02562 73 -----PR-DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIP 145 (448)
T ss_pred -----cc-cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHH
Confidence 11 222 2333433 56777777777631 23589999999999999999999999999999988777665543
Q ss_pred hcccCCCC---CCC--Ccc-ccCCCCCCCccccccCCC-CCCCC----ChHHHHHHHHHhcccCcEEEecChhhhhhHHH
Q 042970 161 DSKVHENV---TSD--SEY-FKVPGLPDQIEFTKVQLP-IFPSD----DMKDINEQMLAADKKTFGIIINTVEELESAYF 229 (489)
Q Consensus 161 ~~~~~~~~---~~~--~~~-~~~p~~p~~~~~~~~~l~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~ 229 (489)
........ +.+ ..+ ..+|++|. ++..+++ ++... .....+.+..+...+++++++|||++||+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 222 (448)
T PLN02562 146 ELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDV 222 (448)
T ss_pred HHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHH
Confidence 21111111 101 112 24788876 6778888 44221 12333444445667788999999999999888
Q ss_pred HHHHh----hcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcc-cCCHHHHHHHHHH
Q 042970 230 REYKN----AKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSIC-NLTSSQLIELGLG 304 (489)
Q Consensus 230 ~~~~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~-~~~~~~~~~~~~a 304 (489)
+.+.. ...++++.|||++...... ..+...+..+.+|.+||+.+++++||||||||+. ..+.+++.+++.+
T Consensus 223 ~~~~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~ 298 (448)
T PLN02562 223 KNHQASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALA 298 (448)
T ss_pred HHHHhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHH
Confidence 87653 2347899999997643210 0000001124578899999988899999999987 5788999999999
Q ss_pred HHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEee
Q 042970 305 LEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLT 384 (489)
Q Consensus 305 l~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~ 384 (489)
|+.++++|||+++..... . +|++|.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 299 l~~~g~~fiW~~~~~~~~----~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 371 (448)
T PLN02562 299 LEASGRPFIWVLNPVWRE----G--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLC 371 (448)
T ss_pred HHHCCCCEEEEEcCCchh----h--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEe
Confidence 999999999999753211 1 777887766 467888899999999999999999999999999999999999999
Q ss_pred cCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHh
Q 042970 385 WPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALE 464 (489)
Q Consensus 385 ~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~ 464 (489)
+|+++||+.||+++++.+|+|+.+. .+++++|+++|+++|.|+ +||+||+++++++.++ +
T Consensus 372 ~P~~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~ 431 (448)
T PLN02562 372 YPVAGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-E 431 (448)
T ss_pred CCcccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-C
Confidence 9999999999999964579998773 479999999999999877 9999999999999888 7
Q ss_pred hCCChHHHHHHHHHHH
Q 042970 465 EGGSSYNNIQLFFQDI 480 (489)
Q Consensus 465 ~gg~~~~~~~~~~~~~ 480 (489)
+||||.+++++||+++
T Consensus 432 ~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 432 ARLRSMMNFTTLKDEL 447 (448)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7899999999999986
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-64 Score=508.11 Aligned_cols=450 Identities=28% Similarity=0.421 Sum_probs=330.1
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhHH---HHHHHhhh-CCCceEEEEeeCCcccCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHR--AIVTIVTTPVNAARLK---TVLARAVQ-SGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~V~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 80 (489)
|+|||++|+|++||++|++.||+.|+.+| ..|||++++.+...+. ........ ..++++|+.+|.+. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CC
Confidence 68999999999999999999999999998 8899999987754321 11111111 12369999987432 11
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhc---CCC-CcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ---SPK-PCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCL 156 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~-~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~ 156 (489)
. .. .......+......+.+.+++++.+. ..+ ++|||+|.+..|+..+|+++|||++.|++++++.+..+
T Consensus 77 ~-~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 77 T-TE-----DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-cc-----chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 1 00 01222222233334555555555331 113 48999999999999999999999999999999999888
Q ss_pred hhhhhcccC---C--CCCCCCccccCCCCCCCccccccCCC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHH
Q 042970 157 HILRDSKVH---E--NVTSDSEYFKVPGLPDQIEFTKVQLP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFR 230 (489)
Q Consensus 157 ~~~~~~~~~---~--~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~ 230 (489)
.+.+..... . .......++.+|+++.. ++..+++ +.....+...+.+......+++++++||+.+||+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 776432111 0 11111123458888422 6777888 55433333444455556788999999999999999988
Q ss_pred HHHhh--cCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 042970 231 EYKNA--KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS 308 (489)
Q Consensus 231 ~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~ 308 (489)
.+.+. ..++++.|||++....... .. ....+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~-----~~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGD-----DS-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCcccccccc-----cc-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 88653 3368999999943221100 00 0113468999999998889999999999889999999999999999
Q ss_pred CCCEEEEEecCCc---------hhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhC
Q 042970 309 KKPFIWVTRVGNK---------LEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAG 379 (489)
Q Consensus 309 ~~~~v~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 379 (489)
+++|||+++.... .....++ +|++|.++.+ +|+++++|+||.+||+|+++++|||||||||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975211 0011222 6888887764 556778999999999999999999999999999999999
Q ss_pred CcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHH
Q 042970 380 VQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMD-DGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 380 vP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~-~~~~~~~~~~~a~~l~~~ 458 (489)
||||++|+++||+.||+++++++|+|+.++... ...+ ..+.+..+++++|+++|+++|. |+ +||+||+++++.
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~-~~~~-~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~ 454 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW-RGDL-LAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEK 454 (481)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEeeccc-cccc-cccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHH
Confidence 999999999999999954337999999986310 0000 0001126899999999999996 43 999999999999
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcC
Q 042970 459 AKRALEEGGSSYNNIQLFFQDIMQQ 483 (489)
Q Consensus 459 ~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (489)
+++++++||||.+++++||++|...
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999764
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.8e-64 Score=498.92 Aligned_cols=435 Identities=25% Similarity=0.447 Sum_probs=325.1
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLAN-HRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~-rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
|.+.||+++|+|++||++|+++||+.|++ +|+.|||++++.+.. +...... ...++++|+.++ ++++++..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~ 72 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVI 72 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCccc
Confidence 34679999999999999999999999996 699999999986421 1111111 112368898886 46665532
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhc---CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ---SPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
... . .....+......+.+.+.+++++. +.+++|||+|.+..|+..+|+++|||++.|++++++.+..+.+..
T Consensus 73 ~~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 73 SNT--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccc--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 111 1 222334444445556666666652 134599999999999999999999999999999999888776553
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCC-CCCC---C-ChHHHHHHHHHhcc--cCcEEEecChhhhhhHHHHHHH
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPS---D-DMKDINEQMLAADK--KTFGIIINTVEELESAYFREYK 233 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~---~-~~~~~~~~~~~~~~--~~~~~l~~t~~~l~~~~~~~~~ 233 (489)
... ...+.+|++|. ++..+++ ++.. . .+...+.+...... .++++++|||++||+.++++++
T Consensus 149 ~~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 149 TGN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred ccC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 210 12345888876 7788888 5532 1 12333434444333 2469999999999999999885
Q ss_pred hhcCCceEEeCcccCCCccchhhhhcCC--CCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCC
Q 042970 234 NAKQGKVWCIGPVSLCNKESIDKVERGN--KAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKP 311 (489)
Q Consensus 234 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~ 311 (489)
. .+++.|||+.+........ .+. ..+..+.+|.+|||.+++++||||||||+..++.+++.+++.+|+.++++
T Consensus 218 ~---~~v~~VGPL~~~~~~~~~~--~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 218 N---IEMVAVGPLLPAEIFTGSE--SGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred c---CCEEEEcccCccccccccc--cCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 4 2699999997532100000 001 00112458999999998889999999999999999999999999999999
Q ss_pred EEEEEecCCch-----hhhhhh-hchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeec
Q 042970 312 FIWVTRVGNKL-----EELEKW-LVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (489)
Q Consensus 312 ~v~~~~~~~~~-----~~~~~~-~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 385 (489)
|||+++..... .....+ .+|++|.++.+ +|.++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 293 flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~-~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~ 371 (455)
T PLN02152 293 FLWVITDKLNREAKIEGEEETEIEKIAGFRHELE-EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAF 371 (455)
T ss_pred eEEEEecCcccccccccccccccccchhHHHhcc-CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEec
Confidence 99999753110 000001 03678877654 556778999999999999999999999999999999999999999
Q ss_pred CCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhh
Q 042970 386 PLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEE 465 (489)
Q Consensus 386 P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (489)
|++.||+.||+++++.+|+|+.+.... ++.+++++|+++|+++|+| +++.||+||+++++++++++.+
T Consensus 372 P~~~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~--~~~~~r~~a~~~~~~~~~a~~~ 439 (455)
T PLN02152 372 PMWSDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEE--KSVELRESAEKWKRLAIEAGGE 439 (455)
T ss_pred cccccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999975568887774320 1247999999999999964 4568999999999999999999
Q ss_pred CCChHHHHHHHHHHH
Q 042970 466 GGSSYNNIQLFFQDI 480 (489)
Q Consensus 466 gg~~~~~~~~~~~~~ 480 (489)
||||++++++||++|
T Consensus 440 ggsS~~nl~~li~~i 454 (455)
T PLN02152 440 GGSSDKNVEAFVKTL 454 (455)
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999999999986
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-63 Score=501.88 Aligned_cols=457 Identities=28% Similarity=0.474 Sum_probs=323.7
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hHHHHHHHhhhCCCceEEEEeeCCcccCCCCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRA---IVTIVTTPVNAA-RLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH---~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (489)
+++.||+++|+|++||++|++.||+.|+.+|. .||+++++.+.. .............++++|+.+|++.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 46789999999999999999999999999984 466666554322 12222211111123699999885421 11
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhc---CC-CCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQ---SP-KPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCL 156 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~-~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~ 156 (489)
+.+.........+...+......+.+.+.+++.+. +. +++|||+|.+..|+..+|+++|||++.|++++++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 77 PMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 11100000001112222222223344444443321 01 459999999999999999999999999999999888877
Q ss_pred hhhhhcc-cCC-C--CCCCCccccCCCCCCCccccccCCC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHH
Q 042970 157 HILRDSK-VHE-N--VTSDSEYFKVPGLPDQIEFTKVQLP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFRE 231 (489)
Q Consensus 157 ~~~~~~~-~~~-~--~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~ 231 (489)
.+..... ... . ......++.+|+++.. ++..+++ ++........+....+...+++++++|||++||+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 6553211 111 0 0011133557888532 5667777 443222223333444556789999999999999999998
Q ss_pred HHhhc--CCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042970 232 YKNAK--QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK 309 (489)
Q Consensus 232 ~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~ 309 (489)
++... -+++++|||++....... ......++.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 86542 168999999976421100 00001124679999999988899999999998899999999999999999
Q ss_pred CCEEEEEecCCch-hhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc
Q 042970 310 KPFIWVTRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 310 ~~~v~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 388 (489)
++|||+++..... .....+ +|++|.++++..+ ++++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 310 ~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CcEEEEEecCcccccchhhh-CChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999999753211 011122 7889988775544 667999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCC
Q 042970 389 GDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGS 468 (489)
Q Consensus 389 ~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (489)
+||+.||+++++++|+|+.+.... ++ + .+..+++++|+++|+++|.++ +.||+||+++++.+++++++|||
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~---~~--~-~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDY---VS--A-YGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeeccc---cc--c-cCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999987437999999985420 00 0 012579999999999999753 38999999999999999999999
Q ss_pred hHHHHHHHHHHHHcC
Q 042970 469 SYNNIQLFFQDIMQQ 483 (489)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (489)
|.+++++||++|...
T Consensus 459 S~~~l~~~v~~i~~~ 473 (475)
T PLN02167 459 SFVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998753
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1e-47 Score=387.57 Aligned_cols=406 Identities=18% Similarity=0.195 Sum_probs=274.6
Q ss_pred CcEEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCccc--CCCCCCCC
Q 042970 7 EFHILLL-PFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQE--AGLPQGCE 83 (489)
Q Consensus 7 ~~~vl~~-~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 83 (489)
..||+.+ |.++.+|+.-+-+++++|++|||+||++++..... .... ...+++.+.++..... +.... ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~-~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKS-SA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhh-hh
Confidence 3468765 77899999999999999999999999997653110 0000 1124555544321110 00000 00
Q ss_pred CC---CCC-Cchhh----HHHHHHHHh--hchHHHHHHHh--hcCCCCcEEEECCCCcchHHHHHHc-CCCcEEEecchH
Q 042970 84 NF---DML-PSIDL----ASKFFNSHS--MLQLPFENLFS--EQSPKPCCIISDMGYPWTVDTAAKF-NVPRIVFHGFSC 150 (489)
Q Consensus 84 ~~---~~~-~~~~~----~~~~~~~~~--~~~~~l~~ll~--~~~~~~D~VI~D~~~~~~~~~A~~l-gIP~v~l~~~~~ 150 (489)
.. ... ..... ...+....+ .....+.++++ + .+||+||+|.+..|+..+|+.+ ++|.|.++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 000 00011 111111111 23456677776 5 7899999999888999999999 999988877554
Q ss_pred HHHHHHhhhhhcccCCCCC-CCCccccCCCCCC----CccccccCCCCC--------C---CCChHHHHHH--------H
Q 042970 151 FCLFCLHILRDSKVHENVT-SDSEYFKVPGLPD----QIEFTKVQLPIF--------P---SDDMKDINEQ--------M 206 (489)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~p~----~~~~~~~~l~~~--------~---~~~~~~~~~~--------~ 206 (489)
..... ..++ .+..+.++|.+.. ++.+.-|-..++ . .....+..+. +
T Consensus 170 ~~~~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 170 LAENF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred chhHH----------HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 42211 1111 2333445553322 111111110000 0 0001111111 1
Q ss_pred HHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEE
Q 042970 207 LAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVC 286 (489)
Q Consensus 207 ~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs 286 (489)
.+...+.+.+++|+...++. ++.+++++++|||+..+.... ...++++.+|++..+ +++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d~------~rp~~p~v~~vGgi~~~~~~~----------~~l~~~l~~fl~~~~-~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDN------NRPVPPSVQYLGGLHLHKKPP----------QPLDDYLEEFLNNST-NGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCccccC------CCCCCCCeeeecccccCCCCC----------CCCCHHHHHHHhcCC-CcEEEEE
Confidence 22334556788999888873 357789999999987643111 013688999998764 4799999
Q ss_pred eCCccc---CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCcccc
Q 042970 287 LGSICN---LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGF 363 (489)
Q Consensus 287 ~GS~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~ 363 (489)
|||+.. .+.+.+..+++++++.+++|||+++.... +. ..++|+++.+|+||.+||+|+.+++|
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---------~~-----~~p~Nv~i~~w~Pq~~lL~hp~v~~f 368 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---------AI-----NLPANVLTQKWFPQRAVLKHKNVKAF 368 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---------cc-----cCCCceEEecCCCHHHHhcCCCCCEE
Confidence 999864 46778889999999999999999985431 10 12579999999999999999999999
Q ss_pred ccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCCh
Q 042970 364 LTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGE 443 (489)
Q Consensus 364 I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 443 (489)
|||||+||++||+++|||+|++|+++||+.||+|+ +++|+|+.++.. .+++++|+++|+++|+|+
T Consensus 369 ItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~- 433 (507)
T PHA03392 369 VTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP- 433 (507)
T ss_pred EecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH-
Confidence 99999999999999999999999999999999999 599999999887 799999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCC
Q 042970 444 ERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQP 484 (489)
Q Consensus 444 ~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (489)
+||+||+++++.+++. .-+..+.+-.-++++.+..
T Consensus 434 ---~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 434 ---KYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred ---HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 9999999999999854 4333444446666666655
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-48 Score=401.87 Aligned_cols=380 Identities=23% Similarity=0.296 Sum_probs=219.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC-
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM- 87 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 87 (489)
||+++|+ +.||+.++..|+++|++|||+||++++.... .+... ....+++..++.+...+...........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6788875 7799999999999999999999999764221 12111 1124666666533222111111110000
Q ss_pred ----CCchhhHHHHHHH----Hh---hch------HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchH
Q 042970 88 ----LPSIDLASKFFNS----HS---MLQ------LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 88 ----~~~~~~~~~~~~~----~~---~~~------~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~ 150 (489)
............. .. ..+ ..+.+.+++ .++|++|+|.+..|+..+|+.+|+|.+.+.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000000011111 11 011 122333444 6899999999989999999999999987433222
Q ss_pred HHHHHHhhhhhcccCCCC-CCCCccccCCCCCCCccccccCCCCCCC--CChHHHH-HHHHHhc----------------
Q 042970 151 FCLFCLHILRDSKVHENV-TSDSEYFKVPGLPDQIEFTKVQLPIFPS--DDMKDIN-EQMLAAD---------------- 210 (489)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~p~~~~~~~~~l~~~~~--~~~~~~~-~~~~~~~---------------- 210 (489)
... ..... +.+..+.++|.+...+ ...+.+..+ .-+.... .......
T Consensus 152 ~~~----------~~~~~~g~p~~psyvP~~~s~~---~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (500)
T PF00201_consen 152 MYD----------LSSFSGGVPSPPSYVPSMFSDF---SDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPF 218 (500)
T ss_dssp CSC----------CTCCTSCCCTSTTSTTCBCCCS---GTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GG
T ss_pred cch----------hhhhccCCCCChHHhccccccC---CCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccccc
Confidence 110 00111 2222233333222110 111111110 1111111 1111111
Q ss_pred ------ccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEE
Q 042970 211 ------KKTFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVY 284 (489)
Q Consensus 211 ------~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVy 284 (489)
.+...+++|+...++ ++ +.+.|++++||++...+..+ .+.++..|++...+++|||
T Consensus 219 ~~~~~~~~~~l~l~ns~~~ld-----~p-rp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv~ 280 (500)
T PF00201_consen 219 SFRELLSNASLVLINSHPSLD-----FP-RPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVVY 280 (500)
T ss_dssp GCHHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEEE
T ss_pred ccHHHHHHHHHHhhhccccCc-----CC-cchhhcccccCccccccccc------------cccccchhhhccCCCCEEE
Confidence 111223333333332 23 33447899999987655443 3688999999855678999
Q ss_pred EEeCCcccCCHHH-HHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCcccc
Q 042970 285 VCLGSICNLTSSQ-LIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGF 363 (489)
Q Consensus 285 vs~GS~~~~~~~~-~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~ 363 (489)
|||||+....++. .+++++++++++++|||++++.. +..+ ++|+++++|+||.+||+|+++++|
T Consensus 281 vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~----------~~~l-----~~n~~~~~W~PQ~~lL~hp~v~~f 345 (500)
T PF00201_consen 281 VSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP----------PENL-----PKNVLIVKWLPQNDLLAHPRVKLF 345 (500)
T ss_dssp EE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH----------GCHH-----HTTEEEESS--HHHHHTSTTEEEE
T ss_pred EecCcccchhHHHHHHHHHHHHhhCCCcccccccccc----------cccc-----cceEEEeccccchhhhhcccceee
Confidence 9999998744544 77899999999999999997732 1222 469999999999999999999999
Q ss_pred ccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCCh
Q 042970 364 LTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGE 443 (489)
Q Consensus 364 I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 443 (489)
|||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++.. .+|+++|.++|+++|+|+
T Consensus 346 itHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~- 410 (500)
T PF00201_consen 346 ITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP- 410 (500)
T ss_dssp EES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH-
T ss_pred eeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh-
Confidence 99999999999999999999999999999999999 599999999988 799999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042970 444 ERDVRRKRAKEFEELAKRA 462 (489)
Q Consensus 444 ~~~~~~~~a~~l~~~~~~~ 462 (489)
+|++||++++..++.-
T Consensus 411 ---~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 411 ---SYKENAKRLSSLFRDR 426 (500)
T ss_dssp ---HHHHHHHHHHHTTT--
T ss_pred ---HHHHHHHHHHHHHhcC
Confidence 9999999999998754
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2e-44 Score=358.90 Aligned_cols=377 Identities=19% Similarity=0.203 Sum_probs=252.0
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchh
Q 042970 13 LPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSID 92 (489)
Q Consensus 13 ~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (489)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+++. |+.|+.++......+..+. ........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHH
Confidence 46899999999999999999999999999999777766665 7888887632111001100 00011122
Q ss_pred hHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCCCCCCCC
Q 042970 93 LASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSDS 172 (489)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (489)
....+........+.+.+++++ .+||+||+|.+++++..+|+++|||+|.+++.+.... . ++.
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~---~-~~~----------- 131 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE---E-FEE----------- 131 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc---c-ccc-----------
Confidence 3333333333344556666666 7999999999888999999999999998854332110 0 000
Q ss_pred ccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhc------------ccCcEEEecChhhhhhHHHHHHHhhcCCce
Q 042970 173 EYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAAD------------KKTFGIIINTVEELESAYFREYKNAKQGKV 240 (489)
Q Consensus 173 ~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~ 240 (489)
..|...... +............+...+..+...+ ......+..+ ++.+.+.+..+++++
T Consensus 132 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~ 202 (392)
T TIGR01426 132 ---MVSPAGEGS-AEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSF 202 (392)
T ss_pred ---cccccchhh-hhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCe
Confidence 000000000 0000000000000111111111100 0000112222 333433445677899
Q ss_pred EEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCC
Q 042970 241 WCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGN 320 (489)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 320 (489)
+++||+..... +...|....+++++||||+||+.....+.+..+++++.+.+.+++|.++...
T Consensus 203 ~~~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 203 TFVGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred EEECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 99999865422 1223666666678999999998776777788899999999999999887653
Q ss_pred chhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHH
Q 042970 321 KLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVE 400 (489)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e 400 (489)
....+.+ .++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||.++ +
T Consensus 266 ~~~~~~~-----------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~ 331 (392)
T TIGR01426 266 DPADLGE-----------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-A 331 (392)
T ss_pred ChhHhcc-----------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-H
Confidence 2211111 1569999999999999999998 999999999999999999999999999999999999 5
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
++|+|+.+... .+++++|.++|+++|.|+ +|+++++++++.+++. +|. . .+.++|..+
T Consensus 332 ~~g~g~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~---~~~-~-~aa~~i~~~ 389 (392)
T TIGR01426 332 ELGLGRHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA---GGA-R-RAADEIEGF 389 (392)
T ss_pred HCCCEEEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc---CCH-H-HHHHHHHHh
Confidence 99999998766 689999999999999988 8999999999999855 544 3 444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.3e-43 Score=354.68 Aligned_cols=383 Identities=14% Similarity=0.059 Sum_probs=243.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC-C
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF-D 86 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 86 (489)
|||+|+++|+.||++|+++||++|++|||+|+|++++.....++.. |++|+.++............... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6899999999999999999999999999999999999665555443 78888876321110000000000 0
Q ss_pred CCCc---hhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcc
Q 042970 87 MLPS---IDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSK 163 (489)
Q Consensus 87 ~~~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~ 163 (489)
.... ......+..........+.+.+++ ++||+||+|.+.+++..+|+++|||++.+++++.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~------- 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF------- 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-------
Confidence 0000 111222233333444455555556 8999999999888999999999999999887654321100
Q ss_pred cCCCCCCCCccccCCCCCCCccccccCCC-CCCCCChHHHHHHHHHhccc---------CcEEEecChhhhhhHHHHHHH
Q 042970 164 VHENVTSDSEYFKVPGLPDQIEFTKVQLP-IFPSDDMKDINEQMLAADKK---------TFGIIINTVEELESAYFREYK 233 (489)
Q Consensus 164 ~~~~~~~~~~~~~~p~~p~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~t~~~l~~~~~~~~~ 233 (489)
..|. ..........+. ...............+.+.- ....+... ++.+....
T Consensus 143 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 204 (401)
T cd03784 143 ------------PPPL-GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPP 204 (401)
T ss_pred ------------CCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCC
Confidence 0000 000000000000 00000011111111111100 00011100 11111122
Q ss_pred hhcCCceEEeC-cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCC
Q 042970 234 NAKQGKVWCIG-PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTS-SQLIELGLGLEASKKP 311 (489)
Q Consensus 234 ~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~-~~~~~~~~al~~~~~~ 311 (489)
..++++..++| ++...+.. ...+.++..|++.. +++||||+||+..... ..+..++++++..+.+
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred CCccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 33445555554 33222111 11356788888763 5689999999987555 4566788999999999
Q ss_pred EEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcc
Q 042970 312 FIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQ 391 (489)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 391 (489)
+||+++...... ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||
T Consensus 272 ~i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 272 AILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred EEEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 999988654210 012579999999999999999998 99999999999999999999999999999
Q ss_pred hhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 042970 392 FCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYN 471 (489)
Q Consensus 392 ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 471 (489)
+.||+++ +++|+|+.++.. .+++++|.++|++++++ .++++++++++.+++. +|. .
T Consensus 337 ~~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~---~g~--~ 392 (401)
T cd03784 337 PFWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIREE---DGV--P 392 (401)
T ss_pred HHHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc---cCH--H
Confidence 9999999 599999999876 68999999999999985 5667777777777533 333 4
Q ss_pred HHHHHHH
Q 042970 472 NIQLFFQ 478 (489)
Q Consensus 472 ~~~~~~~ 478 (489)
.+.++|+
T Consensus 393 ~~~~~ie 399 (401)
T cd03784 393 SAADVIE 399 (401)
T ss_pred HHHHHHh
Confidence 4444443
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-42 Score=336.30 Aligned_cols=388 Identities=18% Similarity=0.218 Sum_probs=248.8
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (489)
+|||+++..|..||++|+++||++|.++||+|+|++++...+.+.+. |+.|..++....+.....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~---- 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGK---- 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhh----
Confidence 58999999999999999999999999999999999999666666655 56666655321100000000
Q ss_pred CCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCC
Q 042970 87 MLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHE 166 (489)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~ 166 (489)
....................+.+++.+ ..+|+|+.|.....+ .+++..++|++..............
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------- 134 (406)
T COG1819 68 -FAGVKSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG--------- 134 (406)
T ss_pred -hhccchhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc---------
Confidence 000011111223333445566667777 799999998665444 8899999999985333222111000
Q ss_pred CCCCCCccccCCCCCC--CccccccCCC--CCCCCChHHHH-HHHHHhcccCcEEEecChh-------hhhhHHHHHH--
Q 042970 167 NVTSDSEYFKVPGLPD--QIEFTKVQLP--IFPSDDMKDIN-EQMLAADKKTFGIIINTVE-------ELESAYFREY-- 232 (489)
Q Consensus 167 ~~~~~~~~~~~p~~p~--~~~~~~~~l~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~t~~-------~l~~~~~~~~-- 232 (489)
...|.+.. ........++ ........... ...............+... .+...+.+..
T Consensus 135 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (406)
T COG1819 135 --------LPLPPVGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFP 206 (406)
T ss_pred --------cCcccccccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccC
Confidence 00000000 0000111111 00000000000 0000000000000000000 0000000000
Q ss_pred H-hhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCC
Q 042970 233 K-NAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKP 311 (489)
Q Consensus 233 ~-~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~ 311 (489)
. ..++....++||+.... ..+...|.. .++++||||+||.... .+.+..+++++..++.+
T Consensus 207 ~~~~~p~~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~ 267 (406)
T COG1819 207 PGDRLPFIGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVR 267 (406)
T ss_pred CCCCCCCCcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcE
Confidence 0 12223344455554322 234444533 3467999999999977 77888899999999999
Q ss_pred EEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcc
Q 042970 312 FIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQ 391 (489)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 391 (489)
+|+.++. ... .... + ++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||
T Consensus 268 vi~~~~~-~~~-~~~~--~---------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ 332 (406)
T COG1819 268 VIVSLGG-ARD-TLVN--V---------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQ 332 (406)
T ss_pred EEEeccc-ccc-cccc--C---------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcch
Confidence 9999976 211 1111 2 679999999999999999999 99999999999999999999999999999
Q ss_pred hhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 042970 392 FCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYN 471 (489)
Q Consensus 392 ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 471 (489)
+.||.|+ |+.|+|+.++.+ ..+++.|+++|+++|+|+ .|+++++++++.+++. +| .+
T Consensus 333 ~~nA~rv-e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~ 389 (406)
T COG1819 333 PLNAERV-EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PA 389 (406)
T ss_pred hHHHHHH-HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HH
Confidence 9999999 699999999987 799999999999999998 9999999999999977 66 57
Q ss_pred HHHHHHHHHHcCCC
Q 042970 472 NIQLFFQDIMQQPT 485 (489)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (489)
.+++.|++..+.+.
T Consensus 390 ~~a~~le~~~~~~~ 403 (406)
T COG1819 390 KAADLLEEFAREKK 403 (406)
T ss_pred HHHHHHHHHHhccc
Confidence 78888888666543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.4e-41 Score=347.73 Aligned_cols=398 Identities=31% Similarity=0.433 Sum_probs=243.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEE---EEeeCCcccCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRL---VEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~ 83 (489)
+.+++++++|++||++|++.||+.|+++||+||++++..+....... .. ...+.. ...+.....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc----ceeeeeeecChHHhhhhhhhhccchH
Confidence 57889999999999999999999999999999999887554432211 00 001111 11111000012222211
Q ss_pred CCCCCCchhhHHHHHHHHh-hchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcC-CCcEEEecchHHHHHHHhhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHS-MLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFN-VPRIVFHGFSCFCLFCLHILRD 161 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lg-IP~v~l~~~~~~~~~~~~~~~~ 161 (489)
... .........+..... ...............++|++|+|.+..+...++...+ |+..++.+..........+...
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 100 000000111222221 1222222222221234999999998667777776664 8888887777765543322111
Q ss_pred cccCCCCCCCCccccCCCCCCC-----cccc-------ccCCC-CCCC----CChHHHHHHHHHhc----ccCcEEEecC
Q 042970 162 SKVHENVTSDSEYFKVPGLPDQ-----IEFT-------KVQLP-IFPS----DDMKDINEQMLAAD----KKTFGIIINT 220 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~p~~-----~~~~-------~~~l~-~~~~----~~~~~~~~~~~~~~----~~~~~~l~~t 220 (489)
..+|..... ..+. ...++ +... .............. .....++.++
T Consensus 159 -------------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 159 -------------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred -------------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 011111100 0000 00011 0000 00000000000000 1111233333
Q ss_pred -hhhhhhHHHHHH-HhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCC--eEEEEEeCCcc---cC
Q 042970 221 -VEELESAYFREY-KNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPS--SVVYVCLGSIC---NL 293 (489)
Q Consensus 221 -~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vVyvs~GS~~---~~ 293 (489)
+..+++.....+ .....+++++|||+........ .+.+..|++..+.. +||||||||+. .+
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 444444333333 3334689999999987633210 12466676665554 89999999999 68
Q ss_pred CHHHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhh-hcCCCccccccccChhh
Q 042970 294 TSSQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMI-LSHPAVGGFLTHCGWNS 371 (489)
Q Consensus 294 ~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~l-l~~~~~~~~I~HgG~~s 371 (489)
+.++..+++.+++.+ +++|+|++....... ++.++..+ ..+|+...+|+||.++ |+|+++++|||||||||
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 899999999999999 889999998754221 11222111 2468999999999998 59999999999999999
Q ss_pred HHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHH
Q 042970 372 SLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKR 451 (489)
Q Consensus 372 ~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~ 451 (489)
++|++++|||+|++|+++||+.||++++ +.|.|..+... ..+...+..++.+++.++ +|+++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~~ 428 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKEA 428 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHHH
Confidence 9999999999999999999999999995 77777666655 466666999999999988 99999
Q ss_pred HHHHHHHHH
Q 042970 452 AKEFEELAK 460 (489)
Q Consensus 452 a~~l~~~~~ 460 (489)
|+++.+..+
T Consensus 429 ~~~l~~~~~ 437 (496)
T KOG1192|consen 429 AKRLSEILR 437 (496)
T ss_pred HHHHHHHHH
Confidence 999999876
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=218.60 Aligned_cols=323 Identities=19% Similarity=0.153 Sum_probs=201.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM 87 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (489)
.||++.+.++.||++|.++||++|.++||+|.|++.....+. +.. ...++.++.++.. ++.. .
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~-----~~~g~~~~~~~~~----~l~~----~-- 64 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TII-----EKENIPYYSISSG----KLRR----Y-- 64 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccC-----cccCCcEEEEecc----CcCC----C--
Confidence 479999999999999999999999999999999987644331 110 1125777776521 1111 0
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccC
Q 042970 88 LPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP--WTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVH 165 (489)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~--~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~ 165 (489)
. ....+...+..... .-....++++ .+||+||+..-+. .+..+|..+++|++..-.
T Consensus 65 ~-~~~~~~~~~~~~~~-~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~------------------ 122 (352)
T PRK12446 65 F-DLKNIKDPFLVMKG-VMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES------------------ 122 (352)
T ss_pred c-hHHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEECC------------------
Confidence 0 11112222222221 2233456777 8999999876443 478899999999988422
Q ss_pred CCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcC-CceEEeC
Q 042970 166 ENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQ-GKVWCIG 244 (489)
Q Consensus 166 ~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~-~~~~~vG 244 (489)
..+|++..+ +. .+.++.+++ +|++ ....++ .++.++|
T Consensus 123 ---------n~~~g~~nr------------------~~------~~~a~~v~~-~f~~--------~~~~~~~~k~~~tG 160 (352)
T PRK12446 123 ---------DMTPGLANK------------------IA------LRFASKIFV-TFEE--------AAKHLPKEKVIYTG 160 (352)
T ss_pred ---------CCCccHHHH------------------HH------HHhhCEEEE-Eccc--------hhhhCCCCCeEEEC
Confidence 222333221 11 122222222 2211 111222 4678888
Q ss_pred cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEecCCchh
Q 042970 245 PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTS-SQLIELGLGLEASKKPFIWVTRVGNKLE 323 (489)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~ 323 (489)
+-+...... .........+...+++++|+|..||...... +.+.+++..+. .+.+++|.++.+...
T Consensus 161 ~Pvr~~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~- 227 (352)
T PRK12446 161 SPVREEVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNLD- 227 (352)
T ss_pred CcCCccccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchHH-
Confidence 543322110 0011222222333456799999999886433 22334444443 258889988865311
Q ss_pred hhhhhhchhhHHHHhcCCCeEEeccc-c-hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc-----CcchhhHH
Q 042970 324 ELEKWLVEENFEERIKGRGLLIRGWV-P-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF-----GDQFCNEK 396 (489)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~v~~~~-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~ 396 (489)
... .. ..++.+..|+ + ..++++++++ +|||||.+|++|++++|+|+|++|+. .||..||.
T Consensus 228 --------~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~ 294 (352)
T PRK12446 228 --------DSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAE 294 (352)
T ss_pred --------HHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHH
Confidence 101 00 1355666887 4 4678999999 99999999999999999999999985 48999999
Q ss_pred HHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 042970 397 LIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKE 454 (489)
Q Consensus 397 ~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 454 (489)
.+ ++.|+|..+..+ .++++.|.+++.+++.|++ .|++++++
T Consensus 295 ~l-~~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~~---~~~~~~~~ 335 (352)
T PRK12446 295 SF-ERQGYASVLYEE-------------DVTVNSLIKHVEELSHNNE---KYKTALKK 335 (352)
T ss_pred HH-HHCCCEEEcchh-------------cCCHHHHHHHHHHHHcCHH---HHHHHHHH
Confidence 99 599999998766 6899999999999998752 45544444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.4e-24 Score=210.40 Aligned_cols=306 Identities=19% Similarity=0.154 Sum_probs=193.0
Q ss_pred cEEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCC
Q 042970 8 FHILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 8 ~~vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (489)
|||++...+ +.||+..+++||++| |||+|+|++.....+.+.+ .+....++. +.......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~~- 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPG------LGPIQENG- 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccC------ceEeccCC-
Confidence 689999888 999999999999999 6999999988755443322 234444431 11110000
Q ss_pred CCCchhhHHHH---HHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcc
Q 042970 87 MLPSIDLASKF---FNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSK 163 (489)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~ 163 (489)
........... ..........+.+++++ .+||+||+| +.+.+..+|+..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 11111111111 11223344455667777 899999999 555678899999999999876554321
Q ss_pred cCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHh--cccCcEEEecChhhhhhHHHHHHHhhcCCceE
Q 042970 164 VHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAA--DKKTFGIIINTVEELESAYFREYKNAKQGKVW 241 (489)
Q Consensus 164 ~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~ 241 (489)
+.... + ....+..+..+.... ...+...+.-++. .. .....++.
T Consensus 129 --------------~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~ 174 (318)
T PF13528_consen 129 --------------PNFWL---------P--WDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVP 174 (318)
T ss_pred --------------ccCCc---------c--hhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------cccccccc
Confidence 00000 0 000112222222211 2333333333332 10 11113456
Q ss_pred EeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC-CCEEEEEecCC
Q 042970 242 CIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK-KPFIWVTRVGN 320 (489)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~ 320 (489)
++||+....... ... .+++.|+|++|..... .++++++..+ +.+++. +...
T Consensus 175 ~~~p~~~~~~~~-------------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~ 226 (318)
T PF13528_consen 175 FVGPIIRPEIRE-------------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA 226 (318)
T ss_pred ccCchhcccccc-------------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc
Confidence 678775432211 111 1345799999886543 5566676665 566655 4432
Q ss_pred chhhhhhhhchhhHHHHhcCCCeEEeccc--chHhhhcCCCccccccccChhhHHHHHHhCCcEeecCC--cCcchhhHH
Q 042970 321 KLEELEKWLVEENFEERIKGRGLLIRGWV--PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL--FGDQFCNEK 396 (489)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~ 396 (489)
. - ...+|+.+..|. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..||..||+
T Consensus 227 ~--------~-------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~ 289 (318)
T PF13528_consen 227 A--------D-------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNAR 289 (318)
T ss_pred c--------c-------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 1 1 126799998876 45779989988 9999999999999999999999999 789999999
Q ss_pred HHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHh
Q 042970 397 LIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINIL 438 (489)
Q Consensus 397 ~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~i 438 (489)
++ +++|+|+.++.. +++++.|+++|+++
T Consensus 290 ~l-~~~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 290 KL-EELGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred HH-HHCCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 99 699999999877 79999999999865
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=3.5e-22 Score=191.77 Aligned_cols=330 Identities=20% Similarity=0.199 Sum_probs=205.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRA-IVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (489)
++|++...++.||+.|-++|+++|.++|+ +|.+..+....+.... ...++.++.|+... +.. ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~~----~~~----~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSGG----LRR----KG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEeccc----ccc----cC
Confidence 46889999999999999999999999999 5777755433332111 12367888776321 111 10
Q ss_pred CCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhhccc
Q 042970 87 MLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY--PWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKV 164 (489)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~--~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~ 164 (489)
. .......+... ......++++++ .+||+||+-.-+ ..+..+|..+|||.+.
T Consensus 66 ~---~~~~~~~~~~~-~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-------------------- 119 (357)
T COG0707 66 S---LKLLKAPFKLL-KGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII-------------------- 119 (357)
T ss_pred c---HHHHHHHHHHH-HHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE--------------------
Confidence 0 01111111111 223456677888 899999984433 3677889999999998
Q ss_pred CCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeC
Q 042970 165 HENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIG 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vG 244 (489)
.+.+..||..+++ .. +.++. +..++...+. ..-+.+++.+|
T Consensus 120 -------hEqn~~~G~ank~------------------~~------~~a~~-V~~~f~~~~~-------~~~~~~~~~tG 160 (357)
T COG0707 120 -------HEQNAVPGLANKI------------------LS------KFAKK-VASAFPKLEA-------GVKPENVVVTG 160 (357)
T ss_pred -------EecCCCcchhHHH------------------hH------Hhhce-eeeccccccc-------cCCCCceEEec
Confidence 3344555554421 10 11111 1222221110 00012466777
Q ss_pred -cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEecCCch
Q 042970 245 -PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTS-SQLIELGLGLEASKKPFIWVTRVGNKL 322 (489)
Q Consensus 245 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~ 322 (489)
|+...-.. . +..-.... ...++++|+|.-||.....- +.+.++...+.+ +..+++.++.+. .
T Consensus 161 ~Pvr~~~~~-~------------~~~~~~~~-~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-~ 224 (357)
T COG0707 161 IPVRPEFEE-L------------PAAEVRKD-GRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-L 224 (357)
T ss_pred CcccHHhhc-c------------chhhhhhh-ccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-H
Confidence 44322110 0 01111111 11146799999999876321 222233333333 467777777654 2
Q ss_pred hhhhhhhchhhHHHHhcCCC-eEEecccch-HhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc----CcchhhHH
Q 042970 323 EELEKWLVEENFEERIKGRG-LLIRGWVPQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF----GDQFCNEK 396 (489)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~-~~v~~~~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~ 396 (489)
++.. ......| +.+..|..+ ..+++.+++ +||++|.+|+.|++++|+|+|.+|+- .||..||.
T Consensus 225 ~~~~---------~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 225 EELK---------SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred HHHH---------HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 2111 1111233 778889876 568889999 99999999999999999999999983 38999999
Q ss_pred HHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 397 LIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 397 ~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
.+ ++.|.|..++.. .+|++.|.+.|.+++++++..+.|+++++++...
T Consensus 294 ~l-~~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p 341 (357)
T COG0707 294 FL-EKAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKLGKP 341 (357)
T ss_pred HH-HhCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99 699999999887 6999999999999999877667777777666433
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.4e-21 Score=188.82 Aligned_cols=302 Identities=16% Similarity=0.094 Sum_probs=170.6
Q ss_pred EEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceE-EEEeeCCcccCCCCCCCCCCC
Q 042970 9 HILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIR-LVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 9 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 86 (489)
||++...+ +.||+.|.++||++|++ ||+|+|+++......++.. ++. +..+|..... ...+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~--~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLK--GEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEe--ecCC-----
Confidence 57776666 56999999999999999 9999999877533333332 233 2222210000 0111
Q ss_pred CCCchhhHHHHH---HHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcc
Q 042970 87 MLPSIDLASKFF---NSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSK 163 (489)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~ 163 (489)
.. +....+. ...........+++++ .+||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 64 ~~---~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 64 KV---NIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred cC---cHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 01 1111111 1101223345577788 899999999 77777999999999999876532210
Q ss_pred cCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHH-HHhcccCcEEEecChhhhhhHHHHHHHhhcCCceE-
Q 042970 164 VHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQM-LAADKKTFGIIINTVEELESAYFREYKNAKQGKVW- 241 (489)
Q Consensus 164 ~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~- 241 (489)
.|+... ......... ......+.......+..... .. |.+.
T Consensus 127 -------------~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-p~~~~ 169 (321)
T TIGR00661 127 -------------YPLKTD---------------LIVYPTMAALRIFNERCERFIVPDYPFPYT--------IC-PKIIK 169 (321)
T ss_pred -------------CCcccc---------------hhHHHHHHHHHHhccccceEeeecCCCCCC--------CC-ccccc
Confidence 011000 000000111 11112222222222111000 00 0000
Q ss_pred -EeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCC-CEEEEEecC
Q 042970 242 -CIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKK-PFIWVTRVG 319 (489)
Q Consensus 242 -~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~-~~v~~~~~~ 319 (489)
.-+|.. ..+...|... +.+.|+|.+||.. ...+++++.+.+. .++ ++..
T Consensus 170 ~~~~~~~-------------------~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i--~~~~ 220 (321)
T TIGR00661 170 NMEGPLI-------------------RYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIANVKFV--CYSY 220 (321)
T ss_pred cCCCccc-------------------chhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCCeEEE--EeCC
Confidence 001110 1122223222 2345777777743 2344566666543 333 2221
Q ss_pred CchhhhhhhhchhhHHHHhcCCCeEEecccc--hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcC--cchhhH
Q 042970 320 NKLEELEKWLVEENFEERIKGRGLLIRGWVP--QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG--DQFCNE 395 (489)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~p--q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na 395 (489)
.. ....+ ++|+.+.+|.| ..++|+.+++ +|||||++|++|++++|+|++++|... ||..||
T Consensus 221 ~~--------~~~~~-----~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na 285 (321)
T TIGR00661 221 EV--------AKNSY-----NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNA 285 (321)
T ss_pred CC--------Ccccc-----CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHH
Confidence 11 11111 46899889997 4667888888 999999999999999999999999965 899999
Q ss_pred HHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC
Q 042970 396 KLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 396 ~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
+.+ ++.|+|+.++.. .+ ++.+++.++++|+
T Consensus 286 ~~l-~~~g~~~~l~~~-------------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 286 VKL-EDLGCGIALEYK-------------EL---RLLEAILDIRNMK 315 (321)
T ss_pred HHH-HHCCCEEEcChh-------------hH---HHHHHHHhccccc
Confidence 999 599999999766 34 5666777777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=1.5e-18 Score=171.03 Aligned_cols=343 Identities=16% Similarity=0.109 Sum_probs=200.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM 87 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (489)
|||+|+..+..||...++.|+++|.++||+|++++.+.... .... ...++.++.++.+ +....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~----~~~~~------ 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSG----GLRRK------ 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEecc----CcCCC------
Confidence 78999999988999999999999999999999998764211 0110 0125677766521 11110
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccC
Q 042970 88 LPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY--PWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVH 165 (489)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~--~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~ 165 (489)
........... .......+.+++++ .+||+|++.... ..+..++...++|++..... .
T Consensus 65 -~~~~~l~~~~~-~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~--------------- 124 (357)
T PRK00726 65 -GSLANLKAPFK-LLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A--------------- 124 (357)
T ss_pred -ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C---------------
Confidence 00111111111 12233456677787 899999988632 34556788889999863110 0
Q ss_pred CCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCc
Q 042970 166 ENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIGP 245 (489)
Q Consensus 166 ~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp 245 (489)
.++. ..++. ...++.++..+-..+ . ..-+.++..+|+
T Consensus 125 -----------~~~~------------------~~r~~------~~~~d~ii~~~~~~~-----~---~~~~~~i~vi~n 161 (357)
T PRK00726 125 -----------VPGL------------------ANKLL------ARFAKKVATAFPGAF-----P---EFFKPKAVVTGN 161 (357)
T ss_pred -----------CccH------------------HHHHH------HHHhchheECchhhh-----h---ccCCCCEEEECC
Confidence 0000 00011 122333332221111 0 122256777875
Q ss_pred ccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHH-HHHHHHhCCC--CEEEEEecCCch
Q 042970 246 VSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIE-LGLGLEASKK--PFIWVTRVGNKL 322 (489)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~-~~~al~~~~~--~~v~~~~~~~~~ 322 (489)
-....... ....-.. +...+..++|++..|+... ..+.. +.+++.+... .+++.++.+...
T Consensus 162 ~v~~~~~~------------~~~~~~~-~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~ 225 (357)
T PRK00726 162 PVREEILA------------LAAPPAR-LAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGDLE 225 (357)
T ss_pred CCChHhhc------------ccchhhh-ccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCcHH
Confidence 43321100 0000001 1111234567776665432 22333 3355554432 345556654321
Q ss_pred hhhhhhhchhhHHHHh-cCCCeEEecccc-hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCC----cCcchhhHH
Q 042970 323 EELEKWLVEENFEERI-KGRGLLIRGWVP-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FGDQFCNEK 396 (489)
Q Consensus 323 ~~~~~~~l~~~~~~~~-~~~~~~v~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~ 396 (489)
. +.+.. ..-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+.
T Consensus 226 -~---------~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 293 (357)
T PRK00726 226 -E---------VRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANAR 293 (357)
T ss_pred -H---------HHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHH
Confidence 1 11111 122378889984 4789999999 9999999999999999999999997 368999999
Q ss_pred HHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 042970 397 LIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLF 476 (489)
Q Consensus 397 ~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (489)
.+ .+.|.|..++.+ .++++.|+++|.++++|++..+++++++++++ +.++..+.++.+
T Consensus 294 ~i-~~~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 351 (357)
T PRK00726 294 AL-VDAGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAARALG--------KPDAAERLADLI 351 (357)
T ss_pred HH-HHCCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC--------CcCHHHHHHHHH
Confidence 99 599999999776 57899999999999998855455555544433 234444555555
Q ss_pred HHHH
Q 042970 477 FQDI 480 (489)
Q Consensus 477 ~~~~ 480 (489)
++.+
T Consensus 352 ~~~~ 355 (357)
T PRK00726 352 EELA 355 (357)
T ss_pred HHHh
Confidence 5544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=3.5e-17 Score=160.88 Aligned_cols=330 Identities=18% Similarity=0.161 Sum_probs=195.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDML 88 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (489)
||++...+..||....+.|++.|.++||+|++++....... ... ...+++++.++... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~----~~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGG----LRRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecC----cCCC-------
Confidence 58899999999999999999999999999999986532110 110 01256777765321 1110
Q ss_pred CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCC--CcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCC
Q 042970 89 PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMG--YPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHE 166 (489)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~--~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~ 166 (489)
.........+.. -.....+.+++++ .+||+|++... ...+..+|...++|++..... .
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~---------------- 122 (350)
T cd03785 63 GSLKKLKAPFKL-LKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A---------------- 122 (350)
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C----------------
Confidence 001111111111 1223456677788 89999998753 335667888899999863110 0
Q ss_pred CCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCcc
Q 042970 167 NVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIGPV 246 (489)
Q Consensus 167 ~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~ 246 (489)
.+++ ..+. ....++.++..+-...+. ..+.++..+|.-
T Consensus 123 ----------~~~~----------------------~~~~--~~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~ 160 (350)
T cd03785 123 ----------VPGL----------------------ANRL--LARFADRVALSFPETAKY--------FPKDKAVVTGNP 160 (350)
T ss_pred ----------CccH----------------------HHHH--HHHhhCEEEEcchhhhhc--------CCCCcEEEECCC
Confidence 0000 0010 122345555443322110 112467777754
Q ss_pred cCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEecCCchhhh
Q 042970 247 SLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTS-SQLIELGLGLEASKKPFIWVTRVGNKLEEL 325 (489)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~~~ 325 (489)
....... .... ...+...+++++|++..|+...... +.+.+++..+...+..+++.++.+ ..+.+
T Consensus 161 v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~l 226 (350)
T cd03785 161 VREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLEEV 226 (350)
T ss_pred CchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHHHH
Confidence 3221100 0011 2222222334566666666543211 122233444443345556666654 22222
Q ss_pred hhhhchhhHHHHhcCCCeEEeccc-chHhhhcCCCccccccccChhhHHHHHHhCCcEeecCC----cCcchhhHHHHHH
Q 042970 326 EKWLVEENFEERIKGRGLLIRGWV-PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FGDQFCNEKLIVE 400 (489)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~v~~~~-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~e 400 (489)
.+ ... +. .+|+++.+|+ +..++|+.+++ +|+++|.++++||+.+|+|+|+.|. ..+|..|+..+.
T Consensus 227 ~~-----~~~-~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~- 296 (350)
T cd03785 227 KK-----AYE-EL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV- 296 (350)
T ss_pred HH-----HHh-cc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-
Confidence 22 111 11 4689999998 55779999999 9999999999999999999999986 357899999995
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
+.|.|..++.. ..+.++|.++|+++++|++..+.+++++++.
T Consensus 297 ~~g~g~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 297 KAGAAVLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred hCCCEEEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 89999888654 4689999999999998875555565555443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=1.5e-15 Score=149.17 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=178.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM 87 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (489)
|||+|++.+..||+...+.||++|.++||+|++++.+.... .... ...+++++.++.. . ....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~-------~-~~~~-- 63 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG-------G-LRRK-- 63 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc-------C-cCCC--
Confidence 48999999999999988899999999999999998643211 0100 0125677666521 1 0000
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccC
Q 042970 88 LPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY--PWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVH 165 (489)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~--~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~ 165 (489)
.....+...... ......+.+++++ .+||+|++.... ..+..++...++|++.... ...
T Consensus 64 -~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~-------------- 124 (348)
T TIGR01133 64 -GSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NAV-------------- 124 (348)
T ss_pred -ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CCC--------------
Confidence 001111111111 1233456777888 899999987533 2455578888999974211 000
Q ss_pred CCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCc
Q 042970 166 ENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIGP 245 (489)
Q Consensus 166 ~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp 245 (489)
+. . ..+. ..+.++.++..+-...+ .+ ....||.
T Consensus 125 ---------------~~----------------~---~~~~--~~~~~d~ii~~~~~~~~---------~~--~~~~i~n 157 (348)
T TIGR01133 125 ---------------PG----------------L---TNKL--LSRFAKKVLISFPGAKD---------HF--EAVLVGN 157 (348)
T ss_pred ---------------cc----------------H---HHHH--HHHHhCeeEECchhHhh---------cC--CceEEcC
Confidence 00 0 0000 12334444443322111 01 1244442
Q ss_pred ccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHH-HHHHHH---hCCCCEEEEEecCCc
Q 042970 246 VSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIE-LGLGLE---ASKKPFIWVTRVGNK 321 (489)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~-~~~al~---~~~~~~v~~~~~~~~ 321 (489)
-+...... .+. -..++...+++++|.+..|+... +.+.+ +.++++ ..+.++++..++..
T Consensus 158 ~v~~~~~~------------~~~-~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~l~~~~~~~~~~~g~~~- 220 (348)
T TIGR01133 158 PVRQEIRS------------LPV-PRERFGLREGKPTILVLGGSQGA---KILNELVPKALAKLAEKGIQIVHQTGKND- 220 (348)
T ss_pred CcCHHHhc------------ccc-hhhhcCCCCCCeEEEEECCchhH---HHHHHHHHHHHHHHhhcCcEEEEECCcch-
Confidence 21110000 000 01122222234455544455442 22222 223433 33456665444332
Q ss_pred hhhhhhhhchhhHHHHhcCCCe-EEeccc--chHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc---CcchhhH
Q 042970 322 LEELEKWLVEENFEERIKGRGL-LIRGWV--PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF---GDQFCNE 395 (489)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~-~v~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~na 395 (489)
.+.+. ......++ .++.|. +..++++.+++ +|+++|.++++||+++|+|+|++|.. .+|..|+
T Consensus 221 ~~~l~---------~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 221 LEKVK---------NVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred HHHHH---------HHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 12111 11111121 222343 45778999999 99999988999999999999999873 4678899
Q ss_pred HHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 042970 396 KLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKE 454 (489)
Q Consensus 396 ~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 454 (489)
..+ +..|.|..++.. ..+++.|.++++++++|++..+++.+++++
T Consensus 290 ~~i-~~~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 290 KFL-EDLGAGLVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred HHH-HHCCCEEEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 999 589999888655 467999999999999987444444444443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.71 E-value=1.7e-15 Score=149.59 Aligned_cols=353 Identities=13% Similarity=0.039 Sum_probs=200.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM 87 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (489)
+||+++..++.||++|. +|+++|+++|++|.|++.... .+++.+. ...+.+..++. .|+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v----~G~~-------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV----MGLR-------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh----ccHH--------
Confidence 68999999999999999 999999999999999975421 3333210 00123322221 0110
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEE-CCCCcc--hHHHHHHcCCCcEEEecchHHHHHHHhhhhhccc
Q 042970 88 LPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIIS-DMGYPW--TVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKV 164 (489)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~-D~~~~~--~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~ 164 (489)
.....+... ........+++++ .+||+||. |..++. .+.+|+.+|||++.+.+.....+
T Consensus 66 ----~~l~~~~~~-~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw----------- 127 (385)
T TIGR00215 66 ----EVLGRLGRL-LKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAW----------- 127 (385)
T ss_pred ----HHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhc-----------
Confidence 111122222 1233366777888 89999994 643333 33389999999997532111100
Q ss_pred CCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeC
Q 042970 165 HENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIG 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vG 244 (489)
.. ...+.+ .+.++.++... + .+.. ++. ..+.+..++|
T Consensus 128 ----------------~~---------------~~~r~l------~~~~d~v~~~~-~-~e~~---~~~-~~g~~~~~vG 164 (385)
T TIGR00215 128 ----------------RK---------------WRAKKI------EKATDFLLAIL-P-FEKA---FYQ-KKNVPCRFVG 164 (385)
T ss_pred ----------------Cc---------------chHHHH------HHHHhHhhccC-C-CcHH---HHH-hcCCCEEEEC
Confidence 00 000111 11222222221 1 1111 122 1224566788
Q ss_pred cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEecC
Q 042970 245 PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS-----KKPFIWVTRVG 319 (489)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~ 319 (489)
.-........ .....+..+-+.-.+++++|.+--||....-......++++++.. +.++++.....
T Consensus 165 nPv~~~~~~~---------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~ 235 (385)
T TIGR00215 165 HPLLDAIPLY---------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF 235 (385)
T ss_pred Cchhhhcccc---------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 3221111000 001122222222233456888888887652122344455444432 44565554433
Q ss_pred CchhhhhhhhchhhHHHHhc-CCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeec----CCcC-----
Q 042970 320 NKLEELEKWLVEENFEERIK-GRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW----PLFG----- 389 (489)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~----- 389 (489)
.......+ +..... ...+.+..+ ....+++.+|+ +|+-+|..|+ |++.+|+|+|++ |+..
T Consensus 236 ~~~~~~~~------~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~ 305 (385)
T TIGR00215 236 KRRLQFEQ------IKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARR 305 (385)
T ss_pred hhHHHHHH------HHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 22111111 111111 123333322 33568889999 9999999888 999999999999 7642
Q ss_pred ----cchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC----hhHHHHHHHHHHHHHHHHH
Q 042970 390 ----DQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG----EERDVRRKRAKEFEELAKR 461 (489)
Q Consensus 390 ----DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~----~~~~~~~~~a~~l~~~~~~ 461 (489)
+|..|+..++ ..++...+... ..|++.|.+.+.++|+|+ +..+.+++..++++..+
T Consensus 306 ~~~~~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l-- 369 (385)
T TIGR00215 306 LVKTDYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI-- 369 (385)
T ss_pred HHcCCeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh--
Confidence 3788999995 88888777655 699999999999999998 88888888888888776
Q ss_pred HHhhCCChHHHHHHHHH
Q 042970 462 ALEEGGSSYNNIQLFFQ 478 (489)
Q Consensus 462 ~~~~gg~~~~~~~~~~~ 478 (489)
.++|.+.++.+.+++
T Consensus 370 --~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 370 --YCNADSERAAQAVLE 384 (385)
T ss_pred --cCCCHHHHHHHHHhh
Confidence 345677777766654
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=5.1e-15 Score=147.03 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=112.7
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhhhchhhHHHHh--cCCCeEEecccch-Hhh
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKWLVEENFEERI--KGRGLLIRGWVPQ-VMI 354 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~pq-~~l 354 (489)
++++|++..|+.... ..+..+++++... +.++++..+.+.. +-+.+.... .++|+++.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 345787877876532 2355677777643 5667766654321 111121111 1358999999987 479
Q ss_pred hcCCCccccccccChhhHHHHHHhCCcEeec-CCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHH
Q 042970 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVET 433 (489)
Q Consensus 355 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (489)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.++|.+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~-----------------~~~~~l~~ 330 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI-----------------RDDEEVFA 330 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE-----------------CCHHHHHH
Confidence 999998 99999988999999999999985 6667788899999 588988653 36789999
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcC
Q 042970 434 AINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQ 483 (489)
Q Consensus 434 ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (489)
+|.++++|++..+.+++++++++ ...+..+.++.+++.+...
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~~~--------~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 331 KTEALLQDDMKLLQMKEAMKSLY--------LPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHCCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHhhhhh
Confidence 99999998755555555544422 2334455555555555443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=4.6e-15 Score=139.77 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=77.4
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccchH-hhhc
Q 042970 281 SVVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQV-MILS 356 (489)
Q Consensus 281 ~vVyvs~GS~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq~-~ll~ 356 (489)
+.|+|++|...... ....+++++... +.++.+.+|..... .+.+.... ...|+.+..|+++. ++|+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~--------~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPN--------LDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcC--------HHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 46899999655422 334566777653 56677777765321 11222211 24689999999984 7999
Q ss_pred CCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHH
Q 042970 357 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKL 397 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 397 (489)
.+++ +||+|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999 999999 9999999999999999999999999875
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=3.7e-13 Score=133.76 Aligned_cols=148 Identities=12% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHh--CCCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccch-Hhh
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEA--SKKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQ-VMI 354 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq-~~l 354 (489)
++++|+++.|+... ...+..+++++.+ .+.++++..+.+.. +-+.+.... ..+++.+.+|+++ .++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 45688888888763 2345555555432 34566666554321 111122211 2458889999976 568
Q ss_pred hcCCCccccccccChhhHHHHHHhCCcEeec-CCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHH
Q 042970 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVET 433 (489)
Q Consensus 355 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (489)
+..+++ +|+..|-.|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.+++.+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~~ 330 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAIK 330 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHHH
Confidence 999999 99988888999999999999998 6666677899999 599999764 26778999
Q ss_pred HHHHhccCChhHHHHHHHHHHHH
Q 042970 434 AINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 434 ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
+|.++++|++..+.+++++++++
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 331 IVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999998766666666666654
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.61 E-value=1.1e-13 Score=137.60 Aligned_cols=352 Identities=13% Similarity=0.029 Sum_probs=177.9
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (489)
+|||+++..++.||+.|.+ ++++|+++++++.++..... .+++.. ....+.++.++ -.
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~---------~~----- 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-----CESLFDMEELA---------VM----- 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-----CccccCHHHhh---------hc-----
Confidence 3689999999999999999 99999999888888764321 222210 00112222221 00
Q ss_pred CCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCC-Ccch--HHHHHHcCCCcEEEecchHHHHHHHhhhhhcc
Q 042970 87 MLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMG-YPWT--VDTAAKFNVPRIVFHGFSCFCLFCLHILRDSK 163 (489)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~-~~~~--~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~ 163 (489)
........+. ........+.+++++ .+||+|++-.+ ..+. ...|.+.|||++.+.....+.
T Consensus 59 --g~~~~~~~~~-~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~----------- 122 (380)
T PRK00025 59 --GLVEVLPRLP-RLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA----------- 122 (380)
T ss_pred --cHHHHHHHHH-HHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh-----------
Confidence 0001111111 112244567778888 89999885322 2343 334778899988642211000
Q ss_pred cCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEe
Q 042970 164 VHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCI 243 (489)
Q Consensus 164 ~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~v 243 (489)
..+ .... ...+.++.++..+-... . .+.. .+.++.++
T Consensus 123 ---------------~~~-------------------~~~~---~~~~~~d~i~~~~~~~~--~---~~~~-~g~~~~~~ 159 (380)
T PRK00025 123 ---------------WRQ-------------------GRAF---KIAKATDHVLALFPFEA--A---FYDK-LGVPVTFV 159 (380)
T ss_pred ---------------cCc-------------------hHHH---HHHHHHhhheeCCccCH--H---HHHh-cCCCeEEE
Confidence 000 0001 11223334443332111 1 1111 22346777
Q ss_pred CcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCCEEEEEec
Q 042970 244 GPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-----SKKPFIWVTRV 318 (489)
Q Consensus 244 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~ 318 (489)
|.-........ ....++...+.-.+++++|.+..||...........++++++. .+.+++|..+.
T Consensus 160 G~p~~~~~~~~----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~ 229 (380)
T PRK00025 160 GHPLADAIPLL----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN 229 (380)
T ss_pred CcCHHHhcccc----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 73211110000 0012232223322234566676676543211223344444432 24456666542
Q ss_pred CCchhhhhhhhchhhHHHHhcC---CCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcch-hh
Q 042970 319 GNKLEELEKWLVEENFEERIKG---RGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQF-CN 394 (489)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~n 394 (489)
..... .+...... -++.+.+ -.-..+++.+++ +|+.+|.+++ |++.+|+|+|++|...-.+ ..
T Consensus 230 ~~~~~---------~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~ 296 (380)
T PRK00025 230 PKRRE---------QIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWI 296 (380)
T ss_pred hhhHH---------HHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHH
Confidence 32111 11111111 1333322 123668889999 9999999887 9999999999996543222 11
Q ss_pred H------------HHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 042970 395 E------------KLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRA 462 (489)
Q Consensus 395 a------------~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~ 462 (489)
+ ..+ +..+++..+... ..+++.|.+.+.++++|++..++++++++++...+
T Consensus 297 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--- 359 (380)
T PRK00025 297 AKRLVKVPYVSLPNLL-AGRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQL--- 359 (380)
T ss_pred HHHHHcCCeeehHHHh-cCCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---
Confidence 1 122 122222222222 57899999999999999966666666766555543
Q ss_pred HhhCCChHHHHHHHHHHHH
Q 042970 463 LEEGGSSYNNIQLFFQDIM 481 (489)
Q Consensus 463 ~~~gg~~~~~~~~~~~~~~ 481 (489)
..|++.+.++.+.+.+.
T Consensus 360 --~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 360 --RCGADERAAQAVLELLK 376 (380)
T ss_pred --CCCHHHHHHHHHHHHhh
Confidence 23455555555555443
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.58 E-value=1.4e-13 Score=126.14 Aligned_cols=338 Identities=14% Similarity=0.123 Sum_probs=190.6
Q ss_pred CCCcEEEEecC--CCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCC
Q 042970 5 ASEFHILLLPF--LAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQ 80 (489)
Q Consensus 5 ~~~~~vl~~~~--p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (489)
++++||+|.+- .+-||+...+.+|+.|.+. |.+|++++......-+.- ..+++++.+|.-.-. ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CC
Confidence 45679999994 4889999999999999998 999999987655443322 137999998742211 11
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 81 GCENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
+......... + ...+. +.-.+.+....+. .+||++|+|.+= .+. .-+. .|..- +. .
T Consensus 76 G~~~~~d~~~-~-l~e~~---~~Rs~lil~t~~~--fkPDi~IVd~~P-~Gl-r~EL--~ptL~-----------yl--~ 131 (400)
T COG4671 76 GEYGLVDLDG-D-LEETK---KLRSQLILSTAET--FKPDIFIVDKFP-FGL-RFEL--LPTLE-----------YL--K 131 (400)
T ss_pred CceeeeecCC-C-HHHHH---HHHHHHHHHHHHh--cCCCEEEEeccc-cch-hhhh--hHHHH-----------HH--h
Confidence 1111111111 1 11111 1122344555566 899999999543 221 0000 00000 00 0
Q ss_pred hcccCCCCCCCCccccCCCCCCCcccc---ccCCC-CCCCCChHHHHHHHHHhcccCcEEEecChhhhhhH--HHHHHHh
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFT---KVQLP-IFPSDDMKDINEQMLAADKKTFGIIINTVEELESA--YFREYKN 234 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~---~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~--~~~~~~~ 234 (489)
-.+ +.. .+. .++.+ ......-.. ..+....+..+.+.+-..+.+-.+ .++ +..
T Consensus 132 ----------------~~~-t~~-vL~lr~i~D~p~~~~~~w~~~--~~~~~I~r~yD~V~v~GdP~f~d~~~~~~-~~~ 190 (400)
T COG4671 132 ----------------TTG-TRL-VLGLRSIRDIPQELEADWRRA--ETVRLINRFYDLVLVYGDPDFYDPLTEFP-FAP 190 (400)
T ss_pred ----------------hcC-Ccc-eeehHhhhhchhhhccchhhh--HHHHHHHHhheEEEEecCccccChhhcCC-ccH
Confidence 000 000 011 22222 111110000 111111222334443332221110 001 112
Q ss_pred hcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-CCCC--
Q 042970 235 AKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-SKKP-- 311 (489)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~-~~~~-- 311 (489)
.....+.++|-+-.+-+.. + .+ |... +.+.-|+||-|.-.. ..+.+...++|..- .+.+
T Consensus 191 ~i~~k~~ytG~vq~~~~~~-~-----------~p----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~ 252 (400)
T COG4671 191 AIRAKMRYTGFVQRSLPHL-P-----------LP----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHK 252 (400)
T ss_pred hhhhheeEeEEeeccCcCC-C-----------CC----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcc
Confidence 2226788888761110000 0 00 1110 223358888876432 34555556655543 4444
Q ss_pred EEEEEecCCchhhhhhhhchhhHHHHh-----cCCCeEEecccch-HhhhcCCCccccccccChhhHHHHHHhCCcEeec
Q 042970 312 FIWVTRVGNKLEELEKWLVEENFEERI-----KGRGLLIRGWVPQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (489)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~v~~~~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 385 (489)
.++.+|.. .|.....+. +.+++.+..|-.+ ..++..++. +|+-||+||+||-|.+|+|.|++
T Consensus 253 ~~ivtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 253 WLIVTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred eEEEeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 66666654 444332222 2478999999876 668888888 99999999999999999999999
Q ss_pred CCcC---cchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC
Q 042970 386 PLFG---DQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 386 P~~~---DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
|... +|..-|.|+ +++|+--.+..+ .++++.++++|...+.-+
T Consensus 321 Pr~~p~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~~P 366 (400)
T COG4671 321 PRAAPREEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALARP 366 (400)
T ss_pred ccCCCcHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhcccCC
Confidence 9864 999999999 699999888777 799999999999998733
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.49 E-value=1.4e-15 Score=132.53 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=97.5
Q ss_pred EEEEEeCCcccCCH-HHHHHHHHHHHh--CCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccc-hHhhhcC
Q 042970 282 VVYVCLGSICNLTS-SQLIELGLGLEA--SKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVP-QVMILSH 357 (489)
Q Consensus 282 vVyvs~GS~~~~~~-~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~p-q~~ll~~ 357 (489)
+|+|+.||.....- +.+..++..+.. ...++++.+|....... ...+. ....++.+.+|++ ..+++..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~------~~~~~--~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEEL------KIKVE--NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHH------CCCHC--CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHH------HHHHh--ccCCcEEEEechhhHHHHHHH
Confidence 48999998764211 112223333322 25788888887632211 11110 0126899999999 7889999
Q ss_pred CCccccccccChhhHHHHHHhCCcEeecCCcC----cchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHH
Q 042970 358 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG----DQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVET 433 (489)
Q Consensus 358 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (489)
+++ +|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+... ..+.+.|.+
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~-------------~~~~~~L~~ 136 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES-------------ELNPEELAE 136 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC-------------C-SCCCHHH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc-------------cCCHHHHHH
Confidence 999 999999999999999999999999988 999999999 499999999876 678999999
Q ss_pred HHHHhccCC
Q 042970 434 AINILMDDG 442 (489)
Q Consensus 434 ai~~il~~~ 442 (489)
+|.+++.++
T Consensus 137 ~i~~l~~~~ 145 (167)
T PF04101_consen 137 AIEELLSDP 145 (167)
T ss_dssp HHHCHCCCH
T ss_pred HHHHHHcCc
Confidence 999999875
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=1.9e-11 Score=121.38 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=97.7
Q ss_pred CCCeEEEEEeCCcccCCHHHHHH-HHHHHH-----hCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccch
Q 042970 278 QPSSVVYVCLGSICNLTSSQLIE-LGLGLE-----ASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQ 351 (489)
Q Consensus 278 ~~~~vVyvs~GS~~~~~~~~~~~-~~~al~-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq 351 (489)
+++++|.+..|+........+.+ +...+. ..+..+++.+|.+.. +-..+.......++.+.+|+++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~~~~ 275 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGFVTN 275 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEecccc
Confidence 34567777766654333222222 222120 234556666654421 1111211111346888899986
Q ss_pred -HhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcch-hhHHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 352 -VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQF-CNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 352 -~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
.+++..+|+ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+. +.|.|+.. -+++
T Consensus 276 ~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~-----------------~~~~ 335 (382)
T PLN02605 276 MEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS-----------------ESPK 335 (382)
T ss_pred HHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec-----------------CCHH
Confidence 668999999 999999999999999999999998777776 6999894 89998754 3788
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHHHH
Q 042970 430 DVETAINILMDD-GEERDVRRKRAKE 454 (489)
Q Consensus 430 ~l~~ai~~il~~-~~~~~~~~~~a~~ 454 (489)
.|.++|.+++.| ++..+.+++++++
T Consensus 336 ~la~~i~~ll~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 336 EIARIVAEWFGDKSDELEAMSENALK 361 (382)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999987 5444444444443
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.46 E-value=3.8e-11 Score=118.80 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=90.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHh----CCCCEEEEEecCCchhhhhhhhchh-hHHH---------HhcCCCeEE
Q 042970 280 SSVVYVCLGSICNLTSSQLIELGLGLEA----SKKPFIWVTRVGNKLEELEKWLVEE-NFEE---------RIKGRGLLI 345 (489)
Q Consensus 280 ~~vVyvs~GS~~~~~~~~~~~~~~al~~----~~~~~v~~~~~~~~~~~~~~~~l~~-~~~~---------~~~~~~~~v 345 (489)
+++|.+--||...--...+..++++++. .+..+++.+.+........+. +.. +... ....+++.+
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAI-LEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHH-HHhcCceecCCccccchhhccCceEE
Confidence 4578898899754222333445555544 366788877444322222110 000 1000 000123555
Q ss_pred ecccc-hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHh----cceeEecccCCccccccc
Q 042970 346 RGWVP-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVL----RIGVSVGVEVPLKFGEEE 420 (489)
Q Consensus 346 ~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~----g~G~~l~~~~~~~~~~~~ 420 (489)
..+.. ..++++.+++ +|+-+|..| .|+...|+|+|++|.-..|. |+... ++. |.++.+..
T Consensus 284 ~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~---------- 348 (396)
T TIGR03492 284 LLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLAS---------- 348 (396)
T ss_pred EechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCC----------
Confidence 45543 4678999999 999999766 99999999999999766675 98877 464 66666642
Q ss_pred cccccccHHHHHHHHHHhccCC
Q 042970 421 KIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 421 ~~~~~~~~~~l~~ai~~il~~~ 442 (489)
.+.+.|.+++.++++|+
T Consensus 349 -----~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 349 -----KNPEQAAQVVRQLLADP 365 (396)
T ss_pred -----CCHHHHHHHHHHHHcCH
Confidence 35589999999999886
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=1.4e-13 Score=115.97 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCC
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLP 89 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (489)
|+|++.|+.||++|+++||++|++|||+|++++++...+.+.+. |++|+.++.. ...... ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~-------~~~~~~--~~ 62 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD-------SRLPRS--LE 62 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC-------GGGGHH--HH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC-------cCcCcc--cc
Confidence 78999999999999999999999999999999999777766544 8999988632 000000 00
Q ss_pred chhhHHHHHH---HHhhchHHHHHHHhhc------CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHH
Q 042970 90 SIDLASKFFN---SHSMLQLPFENLFSEQ------SPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFC 152 (489)
Q Consensus 90 ~~~~~~~~~~---~~~~~~~~l~~ll~~~------~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~ 152 (489)
.......... ........+.+...+. ....|+++++.....+..+|+++|||++.....+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 63 PLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 0000101111 1111222222222111 1467888889888899999999999999987766653
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=1.8e-09 Score=106.14 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=91.8
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---hhc
Q 042970 282 VVYVCLGSICN-LTSSQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---ILS 356 (489)
Q Consensus 282 vVyvs~GS~~~-~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---ll~ 356 (489)
.+++..|++.. ...+.+.+++..+... +..+++.- ...... .+. ....|+.+.+|+++.+ ++.
T Consensus 198 ~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G-~~~~~~---------~~~--~~~~~v~~~g~~~~~~~~~~~~ 265 (364)
T cd03814 198 PVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVG-DGPARA---------RLE--ARYPNVHFLGFLDGEELAAAYA 265 (364)
T ss_pred eEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEe-CCchHH---------HHh--ccCCcEEEEeccCHHHHHHHHH
Confidence 45667777553 2234444444444332 34544443 322111 111 2256899999998765 788
Q ss_pred CCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 357 HPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 357 ~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
.+++ +|..+. .+++.||+++|+|+|+.+..+ +...+ +..+.|...+. .+.+++.
T Consensus 266 ~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~---------------~~~~~l~ 323 (364)
T cd03814 266 SADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP---------------GDAEAFA 323 (364)
T ss_pred hCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC---------------CCHHHHH
Confidence 8888 887654 368999999999999877543 55566 47788877753 4778899
Q ss_pred HHHHHhccCChhHHHHHHHHHHHH
Q 042970 433 TAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 433 ~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
++|.+++.|++..+.+.+++++..
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 324 AALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999866556666655544
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.28 E-value=7.3e-09 Score=105.68 Aligned_cols=142 Identities=20% Similarity=0.159 Sum_probs=92.5
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---hhcC
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---ILSH 357 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---ll~~ 357 (489)
.+++..|++.. .+.+..++++++.. +.+++++ |.+... +.+.......++.+.+++++.+ ++..
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~~~---------~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGPYR---------EELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCChHH---------HHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 34455677643 33455677777764 4555544 433221 2232333356899999998654 7788
Q ss_pred CCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHH---hcceeEecccCCccccccccccccccHHH
Q 042970 358 PAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEV---LRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 358 ~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~---~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
+++ ||.-.. -+++.||+++|+|+|+.... .....+ +. -+.|...+. -+.++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~---------------~d~~~ 389 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTP---------------GDVDD 389 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCC---------------CCHHH
Confidence 888 875443 34688999999999987543 233344 45 577877754 37889
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHH
Q 042970 431 VETAINILMDDGEERDVRRKRAKEFEE 457 (489)
Q Consensus 431 l~~ai~~il~~~~~~~~~~~~a~~l~~ 457 (489)
+.++|.++++|++..+.+.+++++..+
T Consensus 390 la~~i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 390 CVEKLETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999988666677777766443
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.26 E-value=1.3e-08 Score=99.79 Aligned_cols=144 Identities=17% Similarity=0.116 Sum_probs=88.7
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---hhc
Q 042970 281 SVVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---ILS 356 (489)
Q Consensus 281 ~vVyvs~GS~~~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---ll~ 356 (489)
+.+++..|++.. ...+.+.+++..+...+.++++.-.... .. ..........++.+.+|+++.+ ++.
T Consensus 191 ~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~-~~--------~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 191 RLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLE-LE--------EESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred ceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchh-hh--------HHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 456667777654 2233333333333333555555433221 11 0000011257899999997655 588
Q ss_pred CCCccccccc----cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 357 HPAVGGFLTH----CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 357 ~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
.+++ +|.. .|+ .++.||+++|+|+|+.+. ..+...+ +..+.|...+. -+.+++
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~---------------~d~~~l 319 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP---------------GDAEDL 319 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC---------------CCHHHH
Confidence 8888 6632 333 478999999999998654 4466666 46567877754 368999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHH
Q 042970 432 ETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 432 ~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
.+++.++++|++..+.+++++++.
T Consensus 320 ~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 320 AAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhChHHHHHHHHhHHHh
Confidence 999999999886666666655443
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=2.8e-09 Score=95.32 Aligned_cols=290 Identities=18% Similarity=0.128 Sum_probs=178.3
Q ss_pred cEEEEecCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 8 FHILLLPFL----AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 8 ~~vl~~~~p----~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
|||+|++-+ +.||+..++.||++|.++|.+++|++.+...+.+.+. .. ++.+... ..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~-~~------~f~~~~~---------~~--- 61 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKV-YE------GFKVLEG---------RG--- 61 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhh-hh------hccceee---------ec---
Confidence 578888854 7899999999999999999999999888544433221 10 1221110 00
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcc---hHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPW---TVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~---~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
...+++ .++|++|.|.+..- ...+..+.+.+.+.+-.-....+. +
T Consensus 62 -------------------------~n~ik~--~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~-d---- 109 (318)
T COG3980 62 -------------------------NNLIKE--EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK-D---- 109 (318)
T ss_pred -------------------------cccccc--ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh-h----
Confidence 005666 89999999998864 455677889999986332222110 0
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCce
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKV 240 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~ 240 (489)
........ .+ -+..+.+.+ ...-
T Consensus 110 -----------------------------------------~d~ivN~~-~~-----a~~~y~~v~----------~k~~ 132 (318)
T COG3980 110 -----------------------------------------NDLIVNAI-LN-----ANDYYGLVP----------NKTR 132 (318)
T ss_pred -----------------------------------------hHhhhhhh-hc-----chhhccccC----------cceE
Confidence 00000000 00 000011110 0223
Q ss_pred EEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHH-HHHHHHHHhCCCCEEEEEecC
Q 042970 241 WCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQL-IELGLGLEASKKPFIWVTRVG 319 (489)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~-~~~~~al~~~~~~~v~~~~~~ 319 (489)
++.||-..+-...- -..-..-+.+ +..-|+||+|.. ++..+ -+++..+.+..+.+-++++..
T Consensus 133 ~~lGp~y~~lr~eF------------~~~r~~~~~r--~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~ 195 (318)
T COG3980 133 YYLGPGYAPLRPEF------------YALREENTER--PKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSS 195 (318)
T ss_pred EEecCCceeccHHH------------HHhHHHHhhc--chheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCC
Confidence 56666443321100 0001111211 233599999863 45543 457788877777766777643
Q ss_pred CchhhhhhhhchhhHHHHhc-CCCeEEecccc-hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHH
Q 042970 320 NKLEELEKWLVEENFEERIK-GRGLLIRGWVP-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKL 397 (489)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 397 (489)
.. -+..+..... .+|+....... ...++..+++ .|+-||. |+.|++.-|+|.+++|+...|---|..
T Consensus 196 ~p--------~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~ 264 (318)
T COG3980 196 NP--------TLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKE 264 (318)
T ss_pred Cc--------chhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHH
Confidence 32 1223333332 56776655555 4669999999 9999985 899999999999999999999999999
Q ss_pred HHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHH
Q 042970 398 IVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRA 452 (489)
Q Consensus 398 v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a 452 (489)
. +.+|+-..++.. ++......-+.++.+|. ..|.+.
T Consensus 265 f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~~d~----~~rk~l 300 (318)
T COG3980 265 F-EALGIIKQLGYH--------------LKDLAKDYEILQIQKDY----ARRKNL 300 (318)
T ss_pred H-HhcCchhhccCC--------------CchHHHHHHHHHhhhCH----HHhhhh
Confidence 9 699988877654 67777777788888876 555443
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.20 E-value=3.4e-08 Score=97.19 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=92.2
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHh--CCCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccchHh---h
Q 042970 282 VVYVCLGSICN-LTSSQLIELGLGLEA--SKKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQVM---I 354 (489)
Q Consensus 282 vVyvs~GS~~~-~~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq~~---l 354 (489)
.+++..|++.. ...+.+..++..+.. .+.++++..++.. .....+ ...+. ..+++.+.+++|+.+ +
T Consensus 203 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~-~~~~~~------~~~~~~~~~~v~~~g~~~~~~~~~~ 275 (374)
T cd03817 203 PVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE-REELEE------LARELGLADRVIFTGFVPREELPDY 275 (374)
T ss_pred eEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch-HHHHHH------HHHHcCCCCcEEEeccCChHHHHHH
Confidence 45566677654 223444444444443 3455555433221 111111 11111 256899999998765 6
Q ss_pred hcCCCcccccccc----ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHH
Q 042970 355 LSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 355 l~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
+..+++ +|..+ ..+++.||+++|+|+|+... ...+..+ +..+.|...+.. +. +
T Consensus 276 ~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~---------------~~-~ 332 (374)
T cd03817 276 YKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG---------------DE-A 332 (374)
T ss_pred HHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC---------------CH-H
Confidence 778888 66443 34689999999999998653 4455666 466778877644 22 8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 042970 431 VETAINILMDDGEERDVRRKRAKEFEELA 459 (489)
Q Consensus 431 l~~ai~~il~~~~~~~~~~~~a~~l~~~~ 459 (489)
+.+++.++++|++..+.+++++++.....
T Consensus 333 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 333 LAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999999866666777776666654
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.19 E-value=2.2e-08 Score=99.08 Aligned_cols=148 Identities=24% Similarity=0.230 Sum_probs=91.8
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---hh
Q 042970 281 SVVYVCLGSICN-LTSSQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---IL 355 (489)
Q Consensus 281 ~vVyvs~GS~~~-~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---ll 355 (489)
+.+++..|+... ...+.+.+++..+... +.++++. +.........+ .......+|+.+.+++++.+ ++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~~~~ 292 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPEKEELKE------LAKALGLDNVTFLGRVPKEELPELL 292 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcccHHHHHH------HHHHcCCCcEEEeCCCChHHHHHHH
Confidence 456677787664 2234444444444433 4454443 33322111111 11122357899989998655 67
Q ss_pred cCCCccccccccC---------hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccc
Q 042970 356 SHPAVGGFLTHCG---------WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLV 426 (489)
Q Consensus 356 ~~~~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~ 426 (489)
..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|...+. -
T Consensus 293 ~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~---------------~ 350 (394)
T cd03794 293 AAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP---------------G 350 (394)
T ss_pred HhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC---------------C
Confidence 78888 664332 234799999999999988765433 33 24466766643 3
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 042970 427 KKDDVETAINILMDDGEERDVRRKRAKEFEE 457 (489)
Q Consensus 427 ~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 457 (489)
+.+++.++|.+++.|+++.+.+++++++...
T Consensus 351 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 351 DPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7899999999999998777777777766554
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=3.3e-08 Score=97.79 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=171.2
Q ss_pred cEEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCC
Q 042970 8 FHILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFD 86 (489)
Q Consensus 8 ~~vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (489)
|||++++.| ..|.-.-...||+.|.++||+|++++....... ... .+++.++.++.+. .+. ..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~-~~~-------~~~~~~~~~~~~~----~~~----~~ 64 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DEY-------SPNIFFHEVEVPQ----YPL----FQ 64 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcch-hhh-------ccCeEEEEecccc----cch----hh
Confidence 477888775 667778899999999999999999986532111 010 1245555443110 000 00
Q ss_pred CCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHH----cCCCcEEEecchHHHHHHHhhhh
Q 042970 87 MLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP--WTVDTAAK----FNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~--~~~~~A~~----lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
.. .. .......+.+++++ .+||+|.+..... ....++.. .|+|++..........
T Consensus 65 -~~--~~-------~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------- 125 (371)
T cd04962 65 -YP--PY-------DLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITL------- 125 (371)
T ss_pred -cc--hh-------HHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccc-------
Confidence 00 00 01123456667777 8999998754322 23333332 2789886432111000
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhh--cCC
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNA--KQG 238 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~--~~~ 238 (489)
.+... .+... .......++.++..+-...+ ..... ...
T Consensus 126 -----------------~~~~~---------------~~~~~---~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~ 165 (371)
T cd04962 126 -----------------VGQDP---------------SFQPA---TRFSIEKSDGVTAVSESLRQ-----ETYELFDITK 165 (371)
T ss_pred -----------------ccccc---------------cchHH---HHHHHhhCCEEEEcCHHHHH-----HHHHhcCCcC
Confidence 00000 00011 11234567777766644322 11111 123
Q ss_pred ceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH----hCCCCEEE
Q 042970 239 KVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE----ASKKPFIW 314 (489)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~----~~~~~~v~ 314 (489)
++..+........... ..+...........+ ..+++.+|.+.. .+.+..+++++. +.+.++++
T Consensus 166 ~i~vi~n~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i 232 (371)
T cd04962 166 EIEVIPNFVDEDRFRP----------KPDEALKRRLGAPEG-EKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLL 232 (371)
T ss_pred CEEEecCCcCHhhcCC----------CchHHHHHhcCCCCC-CeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEE
Confidence 4445543222110000 001112122221122 245666776654 233333444443 23555555
Q ss_pred EEecCCchhhhhhhhchhhHHHHhc-CCCeEEecccch-HhhhcCCCccccccc----cChhhHHHHHHhCCcEeecCCc
Q 042970 315 VTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWVPQ-VMILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~pq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~ 388 (489)
...+ .....+.+ ...+.. .+++.+.++.++ ..++..+++ +|.- |.-.++.||+.+|+|+|+..
T Consensus 233 ~G~g-~~~~~~~~------~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~-- 301 (371)
T cd04962 233 VGDG-PERSPAER------LARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN-- 301 (371)
T ss_pred EcCC-cCHHHHHH------HHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC--
Confidence 5433 22221111 111111 457888888775 567888888 6632 33458999999999999864
Q ss_pred CcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 389 GDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 389 ~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
.......+ +.-..|...+. -+.+++.+++.++++|++..+++++++++.
T Consensus 302 --~~~~~e~i-~~~~~G~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 302 --AGGIPEVV-KHGETGFLVDV---------------GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred --CCCchhhh-cCCCceEEcCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34455556 35556766643 378899999999999886666777777765
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.19 E-value=6.6e-08 Score=96.68 Aligned_cols=97 Identities=22% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCeEEecccchHh---hhcCCCcccccc---ccCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+. |...+...+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcCC--
Confidence 56899999999865 5678888 653 2333 4789999999999986 344555566 35456776653
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
-++++++++|.++++|++..+.+.+++++....
T Consensus 351 -------------~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 -------------FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 478999999999999886666666666655443
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.15 E-value=7.5e-08 Score=96.19 Aligned_cols=348 Identities=12% Similarity=0.068 Sum_probs=173.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHH
Q 042970 17 AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASK 96 (489)
Q Consensus 17 ~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (489)
..|.-..+..|++.|+++||+|++++........... ....++.++.++... ..... ....
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~-----~~~~--- 80 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGP------AEYLP-----KEEL--- 80 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEeccccc------ccCCC-----hhhc---
Confidence 4578889999999999999999999864332211100 012356666654211 00000 0000
Q ss_pred HHHHHhhchHHHHHHHhhcCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCCCCCCCCcc
Q 042970 97 FFNSHSMLQLPFENLFSEQSPKPCCIISDMGY--PWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSDSEY 174 (489)
Q Consensus 97 ~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~--~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (489)
..........+...++....+||+|++.... ..+..+++.+|+|++.........
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------- 137 (398)
T cd03800 81 -WPYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV---------------------- 137 (398)
T ss_pred -chhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc----------------------
Confidence 0111112233444455511299999987533 356677889999988643211000
Q ss_pred ccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccch
Q 042970 175 FKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESI 254 (489)
Q Consensus 175 ~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~ 254 (489)
....... . ..................++.++..+....+. +.........++..|.+-.....-..
T Consensus 138 -~~~~~~~----------~-~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~--~~~~~~~~~~~~~vi~ng~~~~~~~~ 203 (398)
T cd03800 138 -KRRHLGA----------A-DTYEPARRIEAEERLLRAADRVIASTPQEAEE--LYSLYGAYPRRIRVVPPGVDLERFTP 203 (398)
T ss_pred -CCccccc----------c-cccchhhhhhHHHHHHhhCCEEEEcCHHHHHH--HHHHccccccccEEECCCCCccceec
Confidence 0000000 0 00000001111123456778887777553331 11000011122444443322110000
Q ss_pred hhhhcCCCCCCCchh-hhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCCEEEEEecCCchhhhhhh
Q 042970 255 DKVERGNKAAIDVPE-CLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-----SKKPFIWVTRVGNKLEELEKW 328 (489)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~~~~~~~~~ 328 (489)
. ..... ...+. ... ...+++..|++.. ...+..+++++.. .+.++++..+...........
T Consensus 204 --------~-~~~~~~~~~~~-~~~-~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~ 270 (398)
T cd03800 204 --------Y-GRAEARRARLL-RDP-DKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEE 270 (398)
T ss_pred --------c-cchhhHHHhhc-cCC-CCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhH
Confidence 0 00011 11121 112 2346677787654 2233344444443 245566555433211000000
Q ss_pred hchhhHHHHhc-CCCeEEecccchHh---hhcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHH
Q 042970 329 LVEENFEERIK-GRGLLIRGWVPQVM---ILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVE 400 (489)
Q Consensus 329 ~l~~~~~~~~~-~~~~~v~~~~pq~~---ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e 400 (489)
.-..+..... .+|+.+.+|+|+.+ ++..+++ ++..+ | -.++.||+++|+|+|+.... .....+ +
T Consensus 271 -~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~ 342 (398)
T cd03800 271 -ELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-V 342 (398)
T ss_pred -HHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-c
Confidence 0000111111 46899999999866 4788888 77542 2 35899999999999987543 355566 4
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
+.+.|...+. -+.+++.++|.+++.|++..+.+.+++++..
T Consensus 343 ~~~~g~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 343 DGVTGLLVDP---------------RDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred CCCCeEEeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7778887753 3789999999999998765556666665543
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.14 E-value=9.5e-08 Score=93.26 Aligned_cols=328 Identities=14% Similarity=0.096 Sum_probs=173.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDML 88 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (489)
||++++....|+......++++|.++||+|++++....... .. ...++..+.++.. .. . .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~-----~~~~~~~~~~~~~-------~~--~---~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---EL-----EALGVKVIPIPLD-------RR--G---I 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---cc-----ccCCceEEecccc-------cc--c---c
Confidence 57888877889999999999999999999999987644432 00 1125666665421 10 0 0
Q ss_pred CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCC
Q 042970 89 PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP--WTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHE 166 (489)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~--~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~ 166 (489)
...... . ....+.++++. .+||+|++..... .+..++...+.|.+.+.........
T Consensus 61 ~~~~~~---~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 NPFKDL---K-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ChHhHH---H-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 000111 1 12245566677 7999999876443 3344455466666654322111100
Q ss_pred CCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHH-HHhcccCcEEEecChhhhhhHHHHHHHhhcC---CceEE
Q 042970 167 NVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQM-LAADKKTFGIIINTVEELESAYFREYKNAKQ---GKVWC 242 (489)
Q Consensus 167 ~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~---~~~~~ 242 (489)
... .......... ......++.++..+-...+. +..... .....
T Consensus 119 -------------~~~--------------~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~~ 166 (359)
T cd03808 119 -------------TSG--------------GLKRRLYLLLERLALRFTDKVIFQNEDDRDL-----ALKLGIIKKKKTVL 166 (359)
T ss_pred -------------ccc--------------hhHHHHHHHHHHHHHhhccEEEEcCHHHHHH-----HHHhcCCCcCceEE
Confidence 000 0001111111 12235566777766543331 111111 12223
Q ss_pred eCcccCCCccchhhhhcCCCCCCCchhhhhhccC-CCCCeEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCCEEEEEec
Q 042970 243 IGPVSLCNKESIDKVERGNKAAIDVPECLTWLDS-QQPSSVVYVCLGSICN-LTSSQLIELGLGLEA--SKKPFIWVTRV 318 (489)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vVyvs~GS~~~-~~~~~~~~~~~al~~--~~~~~v~~~~~ 318 (489)
+.|........ ..... ..+++.+++..|++.. -..+.+.+.+..+.+ .+.++++....
T Consensus 167 ~~~~~~~~~~~------------------~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~ 228 (359)
T cd03808 167 IPGSGVDLDRF------------------SPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDG 228 (359)
T ss_pred ecCCCCChhhc------------------CccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 32221111000 00000 1223467777887654 223444444444443 34454444333
Q ss_pred CCchhhhhhhhchhhHHHHhcCCCeEEecccch-HhhhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchh
Q 042970 319 GNKLEELEKWLVEENFEERIKGRGLLIRGWVPQ-VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFC 393 (489)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~ 393 (489)
.. ...... . .........++.+.++..+ ..++..+++ +|..+. -+++.||+.+|+|+|+.+.. .
T Consensus 229 ~~-~~~~~~--~--~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~ 297 (359)
T cd03808 229 DE-ENPAAI--L--EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----G 297 (359)
T ss_pred Cc-chhhHH--H--HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----C
Confidence 22 110000 0 0111112467887777544 568888888 775443 56899999999999986543 3
Q ss_pred hHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 394 NEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 394 na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
+...+ +..+.|...+. -+.+++.++|.+++.|++..+.+.+++++.
T Consensus 298 ~~~~i-~~~~~g~~~~~---------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 298 CREAV-IDGVNGFLVPP---------------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred chhhh-hcCcceEEECC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45556 46677877653 378999999999999886655666665555
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.13 E-value=1.9e-07 Score=93.77 Aligned_cols=354 Identities=12% Similarity=0.038 Sum_probs=176.6
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
++.||++++....|+-..+..+|+.|+++||+|++++....... .+.. ...++.++.++.. ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~-----~~~~v~~~~~~~~-------~~~--~ 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEIL-----SNPNITIHPLPPP-------PQR--L 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHh-----cCCCEEEEECCCC-------ccc--c
Confidence 46789999999889989999999999999999999976532211 1100 1236777776421 100 0
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECC-CCc----chHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDM-GYP----WTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~-~~~----~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
. . .......+..........+..+++. .++|+|++.. ... .+..++...++|+|..+........ .
T Consensus 67 ~-~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~--~--- 137 (415)
T cd03816 67 N-K-LPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTIL--A--- 137 (415)
T ss_pred c-c-chHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHH--h---
Confidence 0 0 0121222222222233344445666 7899999743 221 2344566679998874332111100 0
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHH-hcccCcEEEecChhhhhhHHHHHHHhhcCCc
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLA-ADKKTFGIIINTVEELESAYFREYKNAKQGK 239 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~~ 239 (489)
.... .. .....+...+.. ..+.++.++..+-..-+. +.... ....+
T Consensus 138 --------------~~~~--~~--------------~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~--l~~~~-~~~~k 184 (415)
T cd03816 138 --------------LKLG--EN--------------HPLVRLAKWYEKLFGRLADYNLCVTKAMKED--LQQFN-NWKIR 184 (415)
T ss_pred --------------cccC--CC--------------CHHHHHHHHHHHHHhhcCCEeeecCHHHHHH--HHhhh-ccCCC
Confidence 0000 00 001111111212 235577777666543221 11110 11123
Q ss_pred eEEeCcccCCCccchhhhhcCCCCCCCchhhhhhc----------------cCCCCCeEEEEEeCCccc-CCHHHHHHHH
Q 042970 240 VWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWL----------------DSQQPSSVVYVCLGSICN-LTSSQLIELG 302 (489)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~vVyvs~GS~~~-~~~~~~~~~~ 302 (489)
+..|..-....-.+.. .......+. ...+++..++++.|.+.. -+.+.+.+.+
T Consensus 185 i~vI~Ng~~~~f~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~ 254 (415)
T cd03816 185 ATVLYDRPPEQFRPLP----------LEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDAL 254 (415)
T ss_pred eeecCCCCHHHceeCc----------HHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHH
Confidence 3322210000000000 000000010 001223356666677554 2233333333
Q ss_pred HHHHh--------CCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEe-cccchHh---hhcCCCcccccc-c---
Q 042970 303 LGLEA--------SKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIR-GWVPQVM---ILSHPAVGGFLT-H--- 366 (489)
Q Consensus 303 ~al~~--------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-~~~pq~~---ll~~~~~~~~I~-H--- 366 (489)
..+.+ .+.++ +.+|.+.....+.+ ...+..-+|+.+. +|+|..+ +|..+++ +|. +
T Consensus 255 ~~l~~~~~~~~~~~~i~l-~ivG~G~~~~~l~~------~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~ 325 (415)
T cd03816 255 VAYEKSAATGPKLPKLLC-IITGKGPLKEKYLE------RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSS 325 (415)
T ss_pred HHHHHhhcccccCCCEEE-EEEecCccHHHHHH------HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccc
Confidence 33332 12333 33444433222222 1112223466544 6887654 5778888 663 1
Q ss_pred ---cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccC--
Q 042970 367 ---CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDD-- 441 (489)
Q Consensus 367 ---gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~-- 441 (489)
|--+.+.||+.+|+|+|+... ......+ ++-+.|... . +.++|+++|.++++|
T Consensus 326 ~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~---------------d~~~la~~i~~ll~~~~ 383 (415)
T cd03816 326 SGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G---------------DSEELAEQLIDLLSNFP 383 (415)
T ss_pred cccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C---------------CHHHHHHHHHHHHhcCC
Confidence 123468999999999998643 3455566 576778766 2 578999999999998
Q ss_pred -ChhHHHHHHHHHHHHH
Q 042970 442 -GEERDVRRKRAKEFEE 457 (489)
Q Consensus 442 -~~~~~~~~~~a~~l~~ 457 (489)
+++.+.|.+++++..+
T Consensus 384 ~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 384 NRGKLNSLKKGAQEESE 400 (415)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 7777778777777663
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.08 E-value=3.7e-07 Score=89.22 Aligned_cols=332 Identities=18% Similarity=0.065 Sum_probs=172.2
Q ss_pred EEEEecCC---C-ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 9 HILLLPFL---A-QGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 9 ~vl~~~~p---~-~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
||++++.. . .|+..-+..|++.|.+.||+|++++........... .... ..... .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~------------~~~~--------~~~~~-~ 59 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE------------VGGI--------VVVRP-P 59 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee------------ecCc--------ceecC-C
Confidence 35555533 2 689999999999999999999999876332211000 0000 00000 0
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchH--HHHHHcCCCcEEEecchHHHHHHHhhhhhc
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTV--DTAAKFNVPRIVFHGFSCFCLFCLHILRDS 162 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~--~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~ 162 (489)
. . ... ............+..+++. .++|+|++........ ..+...++|++...........
T Consensus 60 ~--~---~~~-~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------- 123 (374)
T cd03801 60 P--L---LRV-RRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------- 123 (374)
T ss_pred c--c---ccc-chhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------
Confidence 0 0 000 0011111233455666777 7999999887554333 5788889999875443222100
Q ss_pred ccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCC---c
Q 042970 163 KVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQG---K 239 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~---~ 239 (489)
. . . .. ................++.++..+....+ .+....+. +
T Consensus 124 ---------~-~--~---~~--------------~~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~ 169 (374)
T cd03801 124 ---------G-N--E---LG--------------LLLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEK 169 (374)
T ss_pred ---------c-c--c---hh--------------HHHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCc
Confidence 0 0 0 00 00011112222345667777776654333 22333222 4
Q ss_pred eEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh---C--CCCEEE
Q 042970 240 VWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA---S--KKPFIW 314 (489)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~---~--~~~~v~ 314 (489)
+..+.+-.....-.. .......-... .+++.+.+.+|+... ...+..+++++.. . +.++++
T Consensus 170 ~~~i~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i 235 (374)
T cd03801 170 ITVIPNGVDTERFRP-----------APRAARRRLGI-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVI 235 (374)
T ss_pred EEEecCcccccccCc-----------cchHHHhhcCC-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEE
Confidence 555543222111000 00000111111 122345677777653 2234444444443 2 233333
Q ss_pred EEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchH---hhhcCCCcccccc----ccChhhHHHHHHhCCcEeecCC
Q 042970 315 VTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQV---MILSHPAVGGFLT----HCGWNSSLEGISAGVQMLTWPL 387 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~ 387 (489)
++.......... -........++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 236 -~G~~~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 236 -VGDGPLREELEA-----LAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred -EeCcHHHHHHHH-----HHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC
Confidence 332221111110 00111236789999999754 46788888 663 3456789999999999998765
Q ss_pred cCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHH
Q 042970 388 FGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAK 453 (489)
Q Consensus 388 ~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~ 453 (489)
..+...+ +..+.|...+. .+.+++.++|.+++.|++..+.+.++++
T Consensus 308 ----~~~~~~~-~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 308 ----GGIPEVV-EDGETGLLVPP---------------GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ----CChhHHh-cCCcceEEeCC---------------CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 4456666 46677877753 4689999999999998855555555544
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.07 E-value=1.3e-07 Score=91.80 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=68.1
Q ss_pred CCCeEEecccc-hHhhhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhc-ceeEecccCC
Q 042970 340 GRGLLIRGWVP-QVMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLR-IGVSVGVEVP 413 (489)
Q Consensus 340 ~~~~~v~~~~p-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g-~G~~l~~~~~ 413 (489)
..++.+.++.. -..++..+++ +|.... -+++.||+++|+|+|+.+..+.+ ..+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 45677777743 3568888888 776542 46899999999999987544333 2332 344 7777653
Q ss_pred ccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 414 LKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
.+.+++.++|.++++|++..+.+++++++..+.
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999987666677666555544
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.03 E-value=7.2e-07 Score=90.05 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=69.1
Q ss_pred CeEEecccch-HhhhcCCCcccccc------ccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 342 GLLIRGWVPQ-VMILSHPAVGGFLT------HCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 342 ~~~v~~~~pq-~~ll~~~~~~~~I~------HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
++++.+...+ ..+++.+++ ++. .||. ++.||+++|+|+|+.|...++......+ ++.|+++..
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~-~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~------ 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGH-NPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV------ 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCC-CHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE------
Confidence 3444444433 457788887 443 3444 5899999999999999988888888777 466666443
Q ss_pred cccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
-++++|.+++.++++|++..+.+.+++++....
T Consensus 373 -----------~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 373 -----------EDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred -----------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 367899999999999886666666666665544
No 59
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=5.2e-07 Score=88.56 Aligned_cols=149 Identities=18% Similarity=0.112 Sum_probs=93.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCC-CCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchH---hhhcC
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASK-KPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQV---MILSH 357 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~---~ll~~ 357 (489)
.+++..|++.. .+.+..++++++... .++++...+ .......+ -.......+|+.+.+|+|+. .++..
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g-~~~~~~~~-----~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEG-PLEAELEA-----LAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCC-hhHHHHHH-----HHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 45667777643 334556777777665 454444332 21111111 01011225799999999975 47777
Q ss_pred CCcccccc---ccChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHH-hcceeEecccCCccccccccccccccHHHHH
Q 042970 358 PAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEV-LRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 358 ~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~-~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
+++..+-+ +.|.| ++.||+++|+|+|+....+ ....+ +. .+.|...+. -+.+++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i-~~~~~~g~~~~~---------------~d~~~~~ 323 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYV-NLHGVTGLVVPP---------------GDPAALA 323 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHH-hhCCCceEEeCC---------------CCHHHHH
Confidence 88833223 23444 7889999999999865443 33344 23 566766643 4889999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 433 TAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 433 ~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
++|.++++|+++.+.+++++++...+
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999987777777777766544
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.96 E-value=2.2e-06 Score=86.05 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=70.4
Q ss_pred CCCeEEecccchH---hhhcCCCcccccc---ccCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQV---MILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.+++.+.+++++. ++++.+++ +|. +.|+ .++.||+++|+|+|+... ......+ +.-+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 4689999999864 46888888 663 2343 479999999999998654 3344456 46667776643
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEE 457 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 457 (489)
-+.++++++|.++++|++..+.+++++++..+
T Consensus 353 -------------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 353 -------------HDPADWADALARLLDDPRTRIRMGAAAVEHAA 384 (405)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 37899999999999988666677777766543
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.96 E-value=5.3e-06 Score=83.44 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=89.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC----CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---h
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEAS----KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---I 354 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~----~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---l 354 (489)
.+++..|++.. .+.+..++++++.. +.++++ +|.+...+.+.+ ...+...+|+.+.+|+|+.+ +
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~i-vG~g~~~~~l~~------~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVI-CGQGGGKARLEK------MAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEE-ECCChhHHHHHH------HHHHcCCCceEEeCCCCHHHHHHH
Confidence 45556677653 33455555555533 234443 443322211111 11122235899999998754 6
Q ss_pred hcCCCccccccccCh------hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccH
Q 042970 355 LSHPAVGGFLTHCGW------NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKK 428 (489)
Q Consensus 355 l~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~ 428 (489)
++.+++.++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+..+. -+.
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~---------------~d~ 360 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP---------------ESV 360 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC---------------CCH
Confidence 788888444333321 236899999999999865431 112234 3 77887754 378
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 042970 429 DDVETAINILMDDGEERDVRRKRAKEFEE 457 (489)
Q Consensus 429 ~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 457 (489)
++++++|.++++|++..+.+++++++..+
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999988777778888777554
No 62
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=2.2e-06 Score=84.10 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=68.1
Q ss_pred CCCeEEecccchHh---hhcCCCccccccc----------cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhccee
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTH----------CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGV 406 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~ 406 (489)
.+|+.+.+++|+.+ ++..+++ +|.- |.-+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 57899999997644 6677888 6652 3346899999999999986543 233355 3555777
Q ss_pred EecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 407 SVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
..+. -+.+++.++|.++++|++...+++++|++..
T Consensus 308 ~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 308 LVPP---------------GDPEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7743 3889999999999998866566666665443
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.95 E-value=3.6e-06 Score=82.46 Aligned_cols=318 Identities=19% Similarity=0.060 Sum_probs=162.3
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHH
Q 042970 17 AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASK 96 (489)
Q Consensus 17 ~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (489)
..|+-.-...+++.|.+.||+|++++............. ...... ......... .....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~---------~~~~~~~~~-----~~~~~ 71 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGV---------ERLPVLLPV-----VPLLK 71 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------cccccc---------cccccCcch-----hhccc
Confidence 478899999999999999999999987644332211100 000000 000000000 00000
Q ss_pred HHHHHhhchHHHHHHHh--hcCCCCcEEEECCCCc---chHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCCCCCCC
Q 042970 97 FFNSHSMLQLPFENLFS--EQSPKPCCIISDMGYP---WTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSD 171 (489)
Q Consensus 97 ~~~~~~~~~~~l~~ll~--~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (489)
...........+..+++ . .++|+|++..... .+..++...++|++..........
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------ 131 (377)
T cd03798 72 GPLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------ 131 (377)
T ss_pred cchhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc------------------
Confidence 01111123344566666 6 8999999885443 345567778889887543222110
Q ss_pred CccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhh--cCCceEEeCcccCC
Q 042970 172 SEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNA--KQGKVWCIGPVSLC 249 (489)
Q Consensus 172 ~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~ 249 (489)
... ..............++.++..+-...+ .+... ...++..++.....
T Consensus 132 --------~~~----------------~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~ 182 (377)
T cd03798 132 --------LPR----------------KRLLRALLRRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDT 182 (377)
T ss_pred --------cCc----------------hhhHHHHHHHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCc
Confidence 000 000111222345667777776644332 12222 22455555543222
Q ss_pred CccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEecCCch-hhhhh
Q 042970 250 NKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVTRVGNKL-EELEK 327 (489)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~~-~~~~~ 327 (489)
..-... ......... . ..++.+++..|+... ...+.+.+++..+...+..+.+.+.+.... ....+
T Consensus 183 ~~~~~~----------~~~~~~~~~-~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~ 250 (377)
T cd03798 183 ERFSPA----------DRAEARKLG-L-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEA 250 (377)
T ss_pred ccCCCc----------chHHHHhcc-C-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHH
Confidence 110000 000000011 1 123356677777654 223334444444443323344333332211 11111
Q ss_pred hhchhhHHHHhcCCCeEEecccchH---hhhcCCCcccccc----ccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHH
Q 042970 328 WLVEENFEERIKGRGLLIRGWVPQV---MILSHPAVGGFLT----HCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVE 400 (489)
Q Consensus 328 ~~l~~~~~~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e 400 (489)
-.......+|+.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+-+.. .....+ +
T Consensus 251 -----~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~ 318 (377)
T cd03798 251 -----LAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-T 318 (377)
T ss_pred -----HHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-c
Confidence 01111125689999999875 46777888 652 24567889999999999986543 345566 4
Q ss_pred HhcceeEecccCCccccccccccccccHHHHHHHHHHhccCCh
Q 042970 401 VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGE 443 (489)
Q Consensus 401 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 443 (489)
..+.|...+. -+.+++.+++.++++|++
T Consensus 319 ~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 319 DGENGLLVPP---------------GDPEALAEAILRLLADPW 346 (377)
T ss_pred CCcceeEECC---------------CCHHHHHHHHHHHhcCcH
Confidence 6666776653 488999999999999873
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.94 E-value=1.5e-06 Score=86.68 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=67.9
Q ss_pred CCCeEEecccchH---hhhcCCCccccccc---cC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQV---MILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq~---~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.+++.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-. +.....+ ...+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4789999999976 46788888 6642 22 2477899999999999743 3334455 3555676652
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
.+.+++.++|.++++|++..+.+.+++++..
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3788999999999998876777777776643
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.93 E-value=1.7e-06 Score=82.79 Aligned_cols=292 Identities=19% Similarity=0.173 Sum_probs=155.6
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHH
Q 042970 19 GHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFF 98 (489)
Q Consensus 19 GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (489)
-|++-+-.+.++|.++||+|.+.+-.. +...+.... .++.+..+.. .+. +....+.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~--~~~~~LL~~-----yg~~y~~iG~--------~g~---------~~~~Kl~ 66 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDK--DETEELLDL-----YGIDYIVIGK--------HGD---------SLYGKLL 66 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecc--chHHHHHHH-----cCCCeEEEcC--------CCC---------CHHHHHH
Confidence 499999999999999999999986543 233333332 2788887751 110 1122222
Q ss_pred HHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCCCCCCCCccccCC
Q 042970 99 NSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSDSEYFKVP 178 (489)
Q Consensus 99 ~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 178 (489)
.... ....+.+++++ .+||++|+- .+..+..+|..+|+|+|.+.-.......... ..+. ...+..|
T Consensus 67 ~~~~-R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L---------t~Pl-a~~i~~P 132 (335)
T PF04007_consen 67 ESIE-RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL---------TLPL-ADVIITP 132 (335)
T ss_pred HHHH-HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee---------ehhc-CCeeECC
Confidence 2222 23355566666 799999974 5567888999999999997543322110000 0000 0000011
Q ss_pred CCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEE-ecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccchhhh
Q 042970 179 GLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGII-INTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKV 257 (489)
Q Consensus 179 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~ 257 (489)
..- . .....+ ...+ ..+. .+.+.+ ..++-|+ .
T Consensus 133 ~~~-------------~----~~~~~~---~G~~-~~i~~y~G~~E----------------~ayl~~F-~--------- 165 (335)
T PF04007_consen 133 EAI-------------P----KEFLKR---FGAK-NQIRTYNGYKE----------------LAYLHPF-K--------- 165 (335)
T ss_pred ccc-------------C----HHHHHh---cCCc-CCEEEECCeee----------------EEeecCC-C---------
Confidence 000 0 000000 0011 1111 222221 1122221 1
Q ss_pred hcCCCCCCCchhhhhhccCCCCCeEEEEEeCCccc----CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhh
Q 042970 258 ERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICN----LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEEN 333 (489)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~----~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 333 (489)
++++..+-+... +.+.|++-+-+... ...+.+.++++.+++.+..+|...+...+.. +-.
T Consensus 166 --------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~------~~~- 229 (335)
T PF04007_consen 166 --------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRE------LFE- 229 (335)
T ss_pred --------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhh------HHh-
Confidence 234444444422 34678887777443 2234466788888888777555544333211 111
Q ss_pred HHHHhcCCCeEE-ecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 334 FEERIKGRGLLI-RGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 334 ~~~~~~~~~~~v-~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.-++.+ ..-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +-++-...-+.+. +.|. ...
T Consensus 230 ------~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gl--l~~--- 293 (335)
T PF04007_consen 230 ------KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGL--LYH--- 293 (335)
T ss_pred ------ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCC--eEe---
Confidence 112332 344555689999999 998888 7778999999999974 2223222334453 5554 221
Q ss_pred CccccccccccccccHHHHHHHHHHhc
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILM 439 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il 439 (489)
.-+.+++.+.+++.+
T Consensus 294 ------------~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 ------------STDPDEIVEYVRKNL 308 (335)
T ss_pred ------------cCCHHHHHHHHHHhh
Confidence 256677777666554
No 66
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.93 E-value=2.2e-06 Score=84.41 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCeEEecccc-hH---hhhcCCCcccccccc----ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEeccc
Q 042970 340 GRGLLIRGWVP-QV---MILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVE 411 (489)
Q Consensus 340 ~~~~~v~~~~p-q~---~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~ 411 (489)
..++...+|++ +. .++..+++ +|... ..+++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 45788889998 43 46888888 77753 347899999999999986542 233344 34456666542
Q ss_pred CCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 042970 412 VPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
.+.+++.+++.++++|++....+.+++++.... .-+.....+++++-.
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARELAEN-------EFDSRVQAKRYLSLY 362 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHH
Confidence 478899999999999875555555555544322 334445555555443
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.92 E-value=2.8e-06 Score=83.46 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCCeEEecccchHh---hhcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.+++.+.+|+++.+ ++..+++ +|.-. | -+++.||+++|+|+|+.+ .......+ +. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC--
Confidence 57899999999644 5778888 65432 2 457899999999999965 33455556 35 77776642
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
+.+++.++|.++++|+++.+.+.+++++.
T Consensus 331 --------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34899999999999886666666666665
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.90 E-value=3.2e-06 Score=83.00 Aligned_cols=153 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCCEEEEEecCCchhhhhhhhchhhHHHHhc-CCCeEEecccch-Hhhh
Q 042970 281 SVVYVCLGSICN-LTSSQLIELGLGLEAS--KKPFIWVTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWVPQ-VMIL 355 (489)
Q Consensus 281 ~vVyvs~GS~~~-~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~pq-~~ll 355 (489)
..+++..|.+.. -..+.+.+++..+... +.++++.- .........+. +- ....+.. .+++.+.+|.++ ..++
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG-~~~~~~~~~~~-~~-~~~~~~~~~~~v~~~g~~~~~~~~l 261 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVG-DAQGRRFYYAE-LL-ELIKRLGLQDRVTFVGHCSDMPAAY 261 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEE-CCcccchHHHH-HH-HHHHHcCCcceEEEcCCcccHHHHH
Confidence 356666777654 2344555555555553 34444443 32221111110 00 0111112 467888888543 5588
Q ss_pred cCCCccccccc----cC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHH
Q 042970 356 SHPAVGGFLTH----CG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 356 ~~~~~~~~I~H----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
..+++ +|.- -| -+++.||+++|+|+|+.-. ..+...+ +.-+.|...+. -+.+.
T Consensus 262 ~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~---------------~~~~~ 319 (355)
T cd03819 262 ALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP---------------GDAEA 319 (355)
T ss_pred HhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC---------------CCHHH
Confidence 88888 5532 23 3589999999999998643 3345555 35557877754 48889
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHHHHH
Q 042970 431 VETAINILM-DDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 431 l~~ai~~il-~~~~~~~~~~~~a~~l~~~ 458 (489)
+.++|..++ .|+++.++++++|++..+.
T Consensus 320 l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 320 LAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 999996554 4776667777777766554
No 69
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.88 E-value=1.2e-06 Score=86.55 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=92.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccch---
Q 042970 281 SVVYVCLGSICNLTSSQLIELGLGLEAS-----KKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQ--- 351 (489)
Q Consensus 281 ~vVyvs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq--- 351 (489)
++|+++.+-.... .+.+..+++++..+ +.++++...++.. .-..+.... ..+++++.+.+++
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHHH
Confidence 4666655432222 13466677766653 4566665433221 111111111 2457888876665
Q ss_pred HhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 352 VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 352 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
..++..+++ +|+..|. .+.||+++|+|+|.++..++++. +. ..|.+..+. .++++|
T Consensus 269 ~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv~----------------~d~~~i 324 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLVG----------------TDKENI 324 (365)
T ss_pred HHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-hcCceEEeC----------------CCHHHH
Confidence 456677887 9998764 47999999999999976666552 32 456665542 478899
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 042970 432 ETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQ 478 (489)
Q Consensus 432 ~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (489)
.+++.++++|+ ..+++... .. ....+|+++.+.++.+.+
T Consensus 325 ~~ai~~ll~~~----~~~~~~~~---~~-~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 325 TKAAKRLLTDP----DEYKKMSN---AS-NPYGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHhCh----HHHHHhhh---cC-CCCcCchHHHHHHHHHHh
Confidence 99999999887 44433322 21 112345565555554443
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.84 E-value=3.9e-06 Score=82.44 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCCeEEec-ccchH---hhhcCCCccccccc------cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEec
Q 042970 340 GRGLLIRG-WVPQV---MILSHPAVGGFLTH------CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVG 409 (489)
Q Consensus 340 ~~~~~v~~-~~pq~---~ll~~~~~~~~I~H------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~ 409 (489)
..++.+.+ |+|+. .++..+++ +|.- |..++++||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 46777765 48764 57778888 6632 33558889999999999977544 3334 3556777665
Q ss_pred ccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 410 VEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
. -+.+++.+++.++++|++..+.+++++++..+.
T Consensus 318 ~---------------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 P---------------GDPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred C---------------CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 3 368899999999999876655666665555443
No 71
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=2.2e-05 Score=75.37 Aligned_cols=329 Identities=14% Similarity=0.186 Sum_probs=186.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVT-TPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
-.+-+..-+.|-++-.++|.++|+++ ++.|++-+ ++...+..+.. .+..+...-+| -+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~------~~~~v~h~YlP---------~D---- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL------FGDSVIHQYLP---------LD---- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH------cCCCeEEEecC---------cC----
Confidence 46677777899999999999999999 88888876 55555555444 22234444333 11
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEE-ECC-CCcchHHHHHHcCCCcEEEec-chHHHHHHHhhhhhc
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCII-SDM-GYPWTVDTAAKFNVPRIVFHG-FSCFCLFCLHILRDS 162 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI-~D~-~~~~~~~~A~~lgIP~v~l~~-~~~~~~~~~~~~~~~ 162 (489)
....+.+.++. ++||++| .+. +-+....-+++.|+|.+.+.. .+..++
T Consensus 111 ------------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~--------- 161 (419)
T COG1519 111 ------------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSF--------- 161 (419)
T ss_pred ------------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhh---------
Confidence 12256677777 8999977 444 323455568899999998532 000000
Q ss_pred ccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHH-HhcccCcEEEecChhhhhhHHHHHHHhhcC-Cce
Q 042970 163 KVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQML-AADKKTFGIIINTVEELESAYFREYKNAKQ-GKV 240 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~-~~~ 240 (489)
. .+. .+..+. ..+.+-+.++..+-..-+ . +. .+| +++
T Consensus 162 ------------------~----------------~y~-k~~~~~~~~~~~i~li~aQse~D~~--R---f~-~LGa~~v 200 (419)
T COG1519 162 ------------------A----------------RYA-KLKFLARLLFKNIDLILAQSEEDAQ--R---FR-SLGAKPV 200 (419)
T ss_pred ------------------H----------------HHH-HHHHHHHHHHHhcceeeecCHHHHH--H---HH-hcCCcce
Confidence 0 011 111111 123445555555533211 1 11 112 334
Q ss_pred EEeCcccCCCccchhhhhcCCCCCCCch---hhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC--CCEEEE
Q 042970 241 WCIGPVSLCNKESIDKVERGNKAAIDVP---ECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK--KPFIWV 315 (489)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~--~~~v~~ 315 (489)
.-.|-+=-....... ++. .+...++.. ++ +.|..+|... ..+...+...++.+.. ..+||+
T Consensus 201 ~v~GNlKfd~~~~~~----------~~~~~~~~r~~l~~~--r~-v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlV 266 (419)
T COG1519 201 VVTGNLKFDIEPPPQ----------LAAELAALRRQLGGH--RP-VWVAASTHEG-EEEIILDAHQALKKQFPNLLLILV 266 (419)
T ss_pred EEecceeecCCCChh----------hHHHHHHHHHhcCCC--Cc-eEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEe
Confidence 555543222111100 111 233334332 22 5566666332 3444555666666543 333443
Q ss_pred EecCCchhhhhhhhchh--hH----HHHh----cCCCeEEecccch-HhhhcCCCc----cccccccChhhHHHHHHhCC
Q 042970 316 TRVGNKLEELEKWLVEE--NF----EERI----KGRGLLIRGWVPQ-VMILSHPAV----GGFLTHCGWNSSLEGISAGV 380 (489)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--~~----~~~~----~~~~~~v~~~~pq-~~ll~~~~~----~~~I~HgG~~s~~eal~~Gv 380 (489)
=+.........+ +-. |+ .++. ...++++.|-+-- ..++.-+++ +-++-+||+| ..|++++|+
T Consensus 267 PRHpERf~~v~~--l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~ 343 (419)
T COG1519 267 PRHPERFKAVEN--LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGT 343 (419)
T ss_pred cCChhhHHHHHH--HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCC
Confidence 222211110000 000 00 0000 1225666555533 334444544 3356799998 579999999
Q ss_pred cEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 042970 381 QMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAK 460 (489)
Q Consensus 381 P~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 460 (489)
|+|.-|+...|..-++++ ++.|.|+.++ +++.|.+++..++.|+++.+.|.+++.++-...+
T Consensus 344 pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~-----------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 344 PVIFGPYTFNFSDIAERL-LQAGAGLQVE-----------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred CEEeCCccccHHHHHHHH-HhcCCeEEEC-----------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999 6999999884 3788999999999998888888888888877766
Q ss_pred H
Q 042970 461 R 461 (489)
Q Consensus 461 ~ 461 (489)
.
T Consensus 406 g 406 (419)
T COG1519 406 G 406 (419)
T ss_pred H
Confidence 3
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.81 E-value=2.3e-06 Score=83.13 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCCeEEecccch-HhhhcCCCccccccc----cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
.+++.+.++.++ ..++..+++ +|.- |.-+++.||+++|+|+|+.... .....+ +..+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---
Confidence 467888888765 468888888 6632 3356789999999999986433 556667 577788877544
Q ss_pred cccccccccccccHHHH---HHHHHHhccCChhHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDV---ETAINILMDDGEERDVRRK 450 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l---~~ai~~il~~~~~~~~~~~ 450 (489)
+.+.+ .+.+..++.|++....+++
T Consensus 315 ------------~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 315 ------------DEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred ------------CHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 56666 6667777777644444444
No 73
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.80 E-value=7.8e-06 Score=82.85 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCCeEEecccchHhh---hcCC----Ccccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEe
Q 042970 340 GRGLLIRGWVPQVMI---LSHP----AVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSV 408 (489)
Q Consensus 340 ~~~~~v~~~~pq~~l---l~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l 408 (489)
.+++.+.+++++.++ +..+ ++ ||... | -.+++||+++|+|+|+.-. ..+...+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 467888888877654 5544 55 77654 4 3589999999999998754 3345555 355567777
Q ss_pred cccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 042970 409 GVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKE 454 (489)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 454 (489)
+. -++++++++|.++++|++..+.+.+++++
T Consensus 389 ~~---------------~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 389 DV---------------LDLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred CC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 54 47899999999999988655556555554
No 74
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.78 E-value=9.7e-07 Score=85.10 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred hHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcC--cchhhHHHHHH---HhcceeEe-c----ccCCccccccc
Q 042970 351 QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG--DQFCNEKLIVE---VLRIGVSV-G----VEVPLKFGEEE 420 (489)
Q Consensus 351 q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e---~~g~G~~l-~----~~~~~~~~~~~ 420 (489)
-.+++..+++ +|+-+|..|+ |+..+|+|+|+ ++-. =|..||+++ . ..|+.-.+ + ...--++
T Consensus 229 ~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEl---- 299 (347)
T PRK14089 229 THKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPEL---- 299 (347)
T ss_pred HHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchh----
Confidence 3568889999 9999999999 99999999999 6643 588899998 5 44444222 1 0000000
Q ss_pred cccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 042970 421 KIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLF 476 (489)
Q Consensus 421 ~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (489)
.+...|++.|.+++.+. . .+++++...++++.+. +|++.+.++.+
T Consensus 300 -lQ~~~t~~~la~~i~~~-~----~~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 300 -LQEFVTVENLLKAYKEM-D----REKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred -hcccCCHHHHHHHHHHH-H----HHHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 12268999999999772 1 1255666666655542 35555554433
No 75
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.77 E-value=6.8e-06 Score=81.00 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=87.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccch--Hh---
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQ--VM--- 353 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq--~~--- 353 (489)
.+++..|.+.....+.+..+++++... +.++++ +|.+...+.+.+ ..++. ..+++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~~~~l~~------~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSDFEKCKA------YSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCccHHHHHH------HHHHcCCCCeEEEecccCCcHHHHHH
Confidence 455667766432334566677777654 334443 443332222211 11111 2568999998754 22
Q ss_pred hhcCCCccccccc----cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 354 ILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 354 ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
.+..+++ +|.. |--.++.||+++|+|+|+.-. .......+ +.-..|..++. -+.+
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv~~---------------~d~~ 312 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELYTP---------------GNID 312 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEECC---------------CCHH
Confidence 3445666 6643 225689999999999998741 12222345 45556777743 4899
Q ss_pred HHHHHHHHhccCCh--hHHHHHHHHHHHHHH
Q 042970 430 DVETAINILMDDGE--ERDVRRKRAKEFEEL 458 (489)
Q Consensus 430 ~l~~ai~~il~~~~--~~~~~~~~a~~l~~~ 458 (489)
++.++|.++++|++ ....++++++++...
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999999885 234445554544443
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.77 E-value=9.2e-06 Score=80.15 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCCeEEecccchHh---hhcCCCcccccccc----------ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhccee
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTHC----------GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGV 406 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~Hg----------G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~ 406 (489)
.+++.+.+++|+.+ ++..+++ +|..+ --+++.||+++|+|+|+-+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 46888999998754 5788888 66422 346899999999999987654 356666 4667787
Q ss_pred EecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 407 SVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
..+. -+.+++.++|.++++|++..+++++++++.
T Consensus 317 ~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE---------------GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 7753 477899999999999875555555555544
No 77
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.76 E-value=2.9e-06 Score=84.82 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCCeEEecccch-HhhhcCCCccccc--cc--cChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCC
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFL--TH--CGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVP 413 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I--~H--gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~ 413 (489)
.+|+.+.+++++ ..++..+++ +| ++ .|.+ .+.||+.+|+|+|+.+...+. .. +..|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC----
Confidence 568999999986 457888888 66 22 4544 699999999999998754321 12 2345676653
Q ss_pred ccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 414 LKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
-+++++.++|.++++|++..+.+.+++++..
T Consensus 347 ------------~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 347 ------------ADPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3789999999999998765556666665543
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.76 E-value=4.4e-05 Score=74.56 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCCeEEecccch-HhhhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
..++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+ +. .|...+.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCC----
Confidence 356666665443 568888888 776554 37899999999999985 445566666 35 5666653
Q ss_pred cccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
-+.+++.+++.++++|+++.+.+.+++++.
T Consensus 317 -----------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (365)
T cd03807 317 -----------GDPEALAEAIEALLADPALRQALGEAARER 346 (365)
T ss_pred -----------CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 378999999999999875444444444433
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.73 E-value=3e-05 Score=83.72 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=68.2
Q ss_pred CCCeEEecccchHh---hhcCC----Cccccccc---cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEe
Q 042970 340 GRGLLIRGWVPQVM---ILSHP----AVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSV 408 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~----~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l 408 (489)
.++|.+.+++++.+ ++..+ ++ ||.- =|+ .++.||+++|+|+|+....+ ..-.+ +.-.-|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE
Confidence 46788888888765 45444 35 7764 344 47889999999999986433 33344 344567777
Q ss_pred cccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 409 GVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
+. -+++.|+++|.++++|++..+.+.+++++....
T Consensus 620 dP---------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~ 654 (1050)
T TIGR02468 620 DP---------------HDQQAIADALLKLVADKQLWAECRQNGLKNIHL 654 (1050)
T ss_pred CC---------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 54 478899999999999987777777777665443
No 80
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.73 E-value=3.1e-05 Score=77.46 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=75.1
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCCEEEEEecCCchhhhhhhhchhhHHHHhc-CCCeEEecccchHh---
Q 042970 281 SVVYVCLGSICN-LTSSQLIELGLGLEA--SKKPFIWVTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWVPQVM--- 353 (489)
Q Consensus 281 ~vVyvs~GS~~~-~~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~pq~~--- 353 (489)
..+++..|.+.. -..+.+.+.+..+.+ .+.++++. |.+.....+.+ ...+.. .+++.+.+|+|+.+
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~------~~~~~~l~~~v~~~G~~~~~~~~~ 265 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGPKRILLEE------MREKYNLQDRVELLGAVPHERVRD 265 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCchHHHHHH------HHHHhCCCCeEEEeCCCCHHHHHH
Confidence 356777777654 223334444444433 34444443 33322211111 111222 45688899998644
Q ss_pred hhcCCCccccccc---cChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 354 ILSHPAVGGFLTH---CGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 354 ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
+++.+++ +|.- -|+| ++.||+++|+|+|+-+..+ ....+ +. |.+... . .+.+
T Consensus 266 ~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~--------------~~~~ 321 (398)
T cd03796 266 VLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--E--------------PDVE 321 (398)
T ss_pred HHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--C--------------CCHH
Confidence 7778888 6643 3444 8999999999999976643 22344 23 333222 2 3779
Q ss_pred HHHHHHHHhccCC
Q 042970 430 DVETAINILMDDG 442 (489)
Q Consensus 430 ~l~~ai~~il~~~ 442 (489)
++.+++.+++++.
T Consensus 322 ~l~~~l~~~l~~~ 334 (398)
T cd03796 322 SIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999865
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.69 E-value=1.2e-05 Score=78.87 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=81.7
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhC--CCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccch-HhhhcC
Q 042970 282 VVYVCLGSICN-LTSSQLIELGLGLEAS--KKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQ-VMILSH 357 (489)
Q Consensus 282 vVyvs~GS~~~-~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq-~~ll~~ 357 (489)
.+.+..|++.. -..+.+.+.+..+... +.++++. |.+.....+.+ ........+++.+.++..+ .+++..
T Consensus 193 ~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~g~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~ 266 (358)
T cd03812 193 FVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLV-GDGELEEEIKK-----KVKELGLEDKVIFLGVRNDVPELLQA 266 (358)
T ss_pred EEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEE-eCCchHHHHHH-----HHHhcCCCCcEEEecccCCHHHHHHh
Confidence 55666777653 2234444444444433 4444444 33221111111 1111112467888887544 568888
Q ss_pred CCccccccc----cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHH
Q 042970 358 PAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVET 433 (489)
Q Consensus 358 ~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (489)
+++ +|.- |--++++||+++|+|+|+....+ ....+ +. +.|..... -+++++++
T Consensus 267 adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---------------~~~~~~a~ 323 (358)
T cd03812 267 MDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---------------ESPEIWAE 323 (358)
T ss_pred cCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC---------------CCHHHHHH
Confidence 888 6654 34578999999999999865433 44455 35 55655432 36799999
Q ss_pred HHHHhccCChhHHHHHH
Q 042970 434 AINILMDDGEERDVRRK 450 (489)
Q Consensus 434 ai~~il~~~~~~~~~~~ 450 (489)
+|.++++|++..+.+..
T Consensus 324 ~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 324 EILKLKSEDRRERSSES 340 (358)
T ss_pred HHHHHHhCcchhhhhhh
Confidence 99999999854444433
No 82
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.65 E-value=7.6e-06 Score=80.77 Aligned_cols=133 Identities=19% Similarity=0.147 Sum_probs=84.1
Q ss_pred CeEEEEEeCCcccC-CHHHHHHHHHHHHhCCC-CEEEEEecCCc-hhhhhhhhchhhHHHHhc--CCCeEEecccchH--
Q 042970 280 SSVVYVCLGSICNL-TSSQLIELGLGLEASKK-PFIWVTRVGNK-LEELEKWLVEENFEERIK--GRGLLIRGWVPQV-- 352 (489)
Q Consensus 280 ~~vVyvs~GS~~~~-~~~~~~~~~~al~~~~~-~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~v~~~~pq~-- 352 (489)
++.|++++|..... ..+.+..++++++.... ++.+....... ...+.+ ...+.. .+++.+.++.++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~------~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIRE------AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHH------HHHhhccCCCCEEEECCcCHHHH
Confidence 45788888876653 35567778888776533 24444433221 111111 111111 4678877665543
Q ss_pred -hhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 353 -MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 353 -~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
.++..+++ ||+.+| |.+.||+++|+|+|+++.. |. +..+. +.|++..+. -+.++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~----------------~~~~~i 327 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG----------------TDPEAI 327 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC----------------CCHHHH
Confidence 46777888 999999 7778999999999998633 22 33442 566665442 257899
Q ss_pred HHHHHHhccCC
Q 042970 432 ETAINILMDDG 442 (489)
Q Consensus 432 ~~ai~~il~~~ 442 (489)
.+++.++++|+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99999999876
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.65 E-value=5.4e-05 Score=74.44 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=77.3
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCC--CCEEEEEecCCchhhhhhhhchhhHHH-HhcCCCeEEecccchHh---hhcC
Q 042970 284 YVCLGSICNLTSSQLIELGLGLEASK--KPFIWVTRVGNKLEELEKWLVEENFEE-RIKGRGLLIRGWVPQVM---ILSH 357 (489)
Q Consensus 284 yvs~GS~~~~~~~~~~~~~~al~~~~--~~~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~pq~~---ll~~ 357 (489)
++..|++.. .+.+..++++++... .++++.-.+... .... ..+.+ ....+++.+.+++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~-~~~~-----~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHN-TPYG-----KLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCc-chHH-----HHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 334555666666543 555444332221 1111 11111 11257899999999865 5666
Q ss_pred CCccccccccCh-----hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 358 PAVGGFLTHCGW-----NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 358 ~~~~~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
+++ ++.++-. +++.||+++|+|+|+....+ +...+ +. -|...+.. +. +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~---------------~~--l~ 321 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG---------------DD--LA 321 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc---------------hH--HH
Confidence 676 6554433 47899999999999875442 22223 23 23333222 22 99
Q ss_pred HHHHHhccCChhHHHHHHHHHH
Q 042970 433 TAINILMDDGEERDVRRKRAKE 454 (489)
Q Consensus 433 ~ai~~il~~~~~~~~~~~~a~~ 454 (489)
+++.++++|++....+.+++++
T Consensus 322 ~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 322 SLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred HHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999987544444444443
No 84
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.64 E-value=3e-05 Score=75.35 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=77.5
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccchHh---hhcCC
Q 042970 283 VYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQVM---ILSHP 358 (489)
Q Consensus 283 Vyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq~~---ll~~~ 358 (489)
+.+..|... ..+....++++++..+.++++.-.+... ..... ...... ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-~~~~~-----~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-DYFYR-----EIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-HHHHH-----HHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 334556663 3344566777888888887765443321 11110 111111 257899999999854 57888
Q ss_pred Ccccccc--ccCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHH
Q 042970 359 AVGGFLT--HCGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAI 435 (489)
Q Consensus 359 ~~~~~I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 435 (489)
++-++-+ +-|+ .++.||+++|+|+|+.... .+...+ +.-..|...+ ..+++.+++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-----------------~~~~l~~~l 302 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-----------------SVEELAAAV 302 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-----------------CHHHHHHHH
Confidence 8832222 2343 4799999999999987543 333444 2333565542 278899999
Q ss_pred HHhccC
Q 042970 436 NILMDD 441 (489)
Q Consensus 436 ~~il~~ 441 (489)
.+++.+
T Consensus 303 ~~l~~~ 308 (335)
T cd03802 303 ARADRL 308 (335)
T ss_pred HHHhcc
Confidence 988753
No 85
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.57 E-value=0.00014 Score=72.90 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=77.2
Q ss_pred CCCeEEecccchHh---hhcCCCccccccc---------cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhccee
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTH---------CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGV 406 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~ 406 (489)
.+++.+.+|+|+.+ ++..+++ ||.- -|. ++++||+.+|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46799999999865 6778888 7653 344 5689999999999997543 234445 3555677
Q ss_pred EecccCCccccccccccccccHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 042970 407 SVGVEVPLKFGEEEKIGVLVKKDDVETAINILMD-DGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIM 481 (489)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~-~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (489)
..+. -+.++++++|.++++ |+++.+.+.+++++..+. .-+-...++++.+-+.
T Consensus 351 lv~~---------------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE---------------NDAQALAQRLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHh
Confidence 7753 478999999999998 876566666666554332 3333455555555443
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.56 E-value=0.00018 Score=71.56 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=87.5
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEecCCchhhhhhhhchhhHHHH-hcCCCeE-EecccchH---hh
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVTRVGNKLEELEKWLVEENFEER-IKGRGLL-IRGWVPQV---MI 354 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-v~~~~pq~---~l 354 (489)
.+++..|.+.. .+.+..++++++.. +.++++..++........+ +-..+... ....++. +..++++. .+
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 277 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEE--VRQAVALLDRNRTGIIWINKMLPKEELVEL 277 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHH--HHHHHHHhccccCceEEecCCCCHHHHHHH
Confidence 34555676553 34455666666654 5566655544332110001 11111110 0123455 34677754 46
Q ss_pred hcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHH
Q 042970 355 LSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 355 l~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
+..+++ +|.-. | -.++.||+++|+|+|+... ......+ +.-+.|..++... .+..-..+.
T Consensus 278 ~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~---------~~~~~~~~~ 341 (388)
T TIGR02149 278 LSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN---------SDADGFQAE 341 (388)
T ss_pred HHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC---------CcccchHHH
Confidence 788888 76532 2 3467999999999998654 3455566 4666788776440 000112388
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 431 VETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 431 l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
+.++|.++++|++..+.+.+++++..
T Consensus 342 l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 342 LAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999998866666666666543
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=0.00026 Score=70.10 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCeEEecccch-HhhhcCCCcccccc--c--cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCcc
Q 042970 341 RGLLIRGWVPQ-VMILSHPAVGGFLT--H--CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLK 415 (489)
Q Consensus 341 ~~~~v~~~~pq-~~ll~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~ 415 (489)
.++.+.++..+ ..++..+++ +|. + |--+++.||+++|+|+|+-... .+...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCC-----
Confidence 45666565443 568888998 663 2 3356899999999999996643 345555 35556777653
Q ss_pred ccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 416 FGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
-+.+++.++|.++++|++..+.+.+++++.
T Consensus 323 ----------~d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 323 ----------GDAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred ----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378899999999998875555555555544
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.53 E-value=3.9e-05 Score=75.30 Aligned_cols=129 Identities=9% Similarity=0.122 Sum_probs=76.8
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCCEEEEEecCCchhhhhhhhchhhHHHHh-cCCCeEEecccch-Hh
Q 042970 281 SVVYVCLGSICNLTSSQLIELGLGLEA-----SKKPFIWVTRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWVPQ-VM 353 (489)
Q Consensus 281 ~vVyvs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~~pq-~~ 353 (489)
..+++..|++.. .+.+..+++++.. .+.++++.-.+.. .....+ ..... ..+++.+.++..+ ..
T Consensus 188 ~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~------~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 188 TFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL-RATLER------LIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc-HHHHHH------HHHhcCCCCcEEEecccccHHH
Confidence 356677777653 2333344444432 2456666543322 111111 11111 2467888887755 56
Q ss_pred hhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 354 ILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 354 ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
++..+++ +|.-.. -+++.||+.+|+|+|+. |...+...+ +. .|..... -+.+
T Consensus 259 ~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---------------~~~~ 314 (360)
T cd04951 259 YYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---------------SDPE 314 (360)
T ss_pred HHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC---------------CCHH
Confidence 8888888 665432 46889999999999974 555566666 35 3444432 4788
Q ss_pred HHHHHHHHhccCC
Q 042970 430 DVETAINILMDDG 442 (489)
Q Consensus 430 ~l~~ai~~il~~~ 442 (489)
++.+++.+++++.
T Consensus 315 ~~~~~i~~ll~~~ 327 (360)
T cd04951 315 ALANKIDEILKMS 327 (360)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998433
No 89
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.51 E-value=7e-05 Score=72.79 Aligned_cols=206 Identities=18% Similarity=0.117 Sum_probs=106.6
Q ss_pred cCCceEEeC-cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH---h--CC
Q 042970 236 KQGKVWCIG-PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE---A--SK 309 (489)
Q Consensus 236 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~---~--~~ 309 (489)
.+-++.||| |+...-.... .+....+.+ -.+++++|.+--||...-=...+-.++++.+ + .+
T Consensus 151 ~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~ 218 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD 218 (373)
T ss_pred cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346899999 7654322110 123333333 2234668999999966511222233444433 2 46
Q ss_pred CCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecc-cchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCc
Q 042970 310 KPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGW-VPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 310 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 388 (489)
.++++............+ .... ...++.+... -.-.+++..+++ .+.-+| ..++|+..+|+|||++=-.
T Consensus 219 l~fvvp~a~~~~~~~i~~------~~~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 219 LQFVVPVAPEVHEELIEE------ILAE-YPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKV 288 (373)
T ss_pred eEEEEecCCHHHHHHHHH------HHHh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcC
Confidence 667766544322111111 0000 1223332222 234557888888 777777 4577999999999987221
Q ss_pred -CcchhhHHHHHHHhcc-eeE---ecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHH
Q 042970 389 -GDQFCNEKLIVEVLRI-GVS---VGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRAL 463 (489)
Q Consensus 389 -~DQ~~na~~v~e~~g~-G~~---l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~ 463 (489)
.=-+..|+++. +... |+. ++...- .|=.+...|++.|.+++..+|.|+ ..++..+...+.+.+..
T Consensus 289 ~~lt~~iak~lv-k~~~isL~Niia~~~v~-----PEliQ~~~~~~~i~~~~~~ll~~~----~~~~~~~~~~~~~~~~~ 358 (373)
T PF02684_consen 289 SPLTYFIAKRLV-KVKYISLPNIIAGREVV-----PELIQEDATPENIAAELLELLENP----EKRKKQKELFREIRQLL 358 (373)
T ss_pred cHHHHHHHHHhh-cCCEeechhhhcCCCcc-----hhhhcccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHhh
Confidence 12333455553 3221 110 111100 011223689999999999999988 44555555555555555
Q ss_pred hhCCChHHHH
Q 042970 464 EEGGSSYNNI 473 (489)
Q Consensus 464 ~~gg~~~~~~ 473 (489)
+.|.++..+.
T Consensus 359 ~~~~~~~~~~ 368 (373)
T PF02684_consen 359 GPGASSRAAQ 368 (373)
T ss_pred hhccCCHHHH
Confidence 5565555443
No 90
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.50 E-value=0.00032 Score=69.45 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=69.5
Q ss_pred CCCeEEeccc--ch---HhhhcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecc
Q 042970 340 GRGLLIRGWV--PQ---VMILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGV 410 (489)
Q Consensus 340 ~~~~~v~~~~--pq---~~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~ 410 (489)
.+++.+..+. ++ ..+++.+++ |+..+ | -.++.||+++|+|+|+.... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567777776 33 246778888 77543 3 34889999999999986543 233445 3555666542
Q ss_pred cCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 042970 411 EVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIM 481 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (489)
+.+.++.+|.++++|++..+.+.+++++.... .-+-...++++++-+.
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~-------~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHVRE-------NFLITRHLKDYLYLIS 370 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHH
Confidence 34567779999998876566666666654322 2233455555555443
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.46 E-value=0.00098 Score=65.96 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCeEEec-ccchHhh---hcCCCcccccc-c-----cC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEec
Q 042970 341 RGLLIRG-WVPQVMI---LSHPAVGGFLT-H-----CG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVG 409 (489)
Q Consensus 341 ~~~~v~~-~~pq~~l---l~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~ 409 (489)
+|+.+.. |+|+.++ ++.+|+ +|. + -| -+++.||+++|+|+|+... ..+...| +.-+.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 5666544 7887654 888888 763 1 12 3479999999999999743 3355666 4666787762
Q ss_pred ccCCccccccccccccccHHHHHHHHHHhc
Q 042970 410 VEVPLKFGEEEKIGVLVKKDDVETAINILM 439 (489)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~il 439 (489)
++++++++|.+++
T Consensus 359 -----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -----------------SSSELADQLLELL 371 (371)
T ss_pred -----------------CHHHHHHHHHHhC
Confidence 4678888888764
No 92
>PLN02949 transferase, transferring glycosyl groups
Probab=98.45 E-value=0.00047 Score=69.88 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=61.9
Q ss_pred CCCeEEecccchHh---hhcCCCcccccc---ccChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHH-hc-ceeEecc
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEV-LR-IGVSVGV 410 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~-~g-~G~~l~~ 410 (489)
.+++.+..++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+- ....+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 56899999998654 6777877 663 33444 78999999999999854331 00011000 01 12211
Q ss_pred cCCccccccccccccccHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHH
Q 042970 411 EVPLKFGEEEKIGVLVKKDDVETAINILMDD-GEERDVRRKRAKEFEELA 459 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~~ 459 (489)
-+.++++++|.+++++ +++.+.+.+++++-.+++
T Consensus 407 ---------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 407 ---------------TTVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred ---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 2788999999999984 444556666666654443
No 93
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.44 E-value=0.00032 Score=71.43 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=101.5
Q ss_pred cCCceEEeC-cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH--h--CCC
Q 042970 236 KQGKVWCIG-PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE--A--SKK 310 (489)
Q Consensus 236 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~--~--~~~ 310 (489)
.+-++.+|| |+....+.. .+..+..+-+.-.+++++|-+--||..+-=...+-.++++.+ . .+.
T Consensus 379 ~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l 447 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTH 447 (608)
T ss_pred cCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCe
Confidence 467899999 665432110 012333333433345678999999966521222334555554 2 245
Q ss_pred CEEEEEecCCchhhhhhhhchhhHHHHhcCC---CeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCC
Q 042970 311 PFIWVTRVGNKLEELEKWLVEENFEERIKGR---GLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 387 (489)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 387 (489)
++++........+ .+++..... .+.+..--...+++..+++ .+.-+|- -++|+..+|+|||++=-
T Consensus 448 ~fvvp~a~~~~~~---------~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 448 QLLVSSANPKYDH---------LILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQ 515 (608)
T ss_pred EEEEecCchhhHH---------HHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEe
Confidence 5665433322111 111111111 2222211012578888998 8888884 56799999999998621
Q ss_pred -cCcchhhHHHHHHHh--c--------ceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 388 -FGDQFCNEKLIVEVL--R--------IGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 388 -~~DQ~~na~~v~e~~--g--------~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
..=-...++++. +. . +|..+-++ .+. | +...|++.|.+++ ++|.|++..+++++..++++
T Consensus 516 ~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE-llq-g-----Q~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 516 LRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE-FIG-G-----KKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred cCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh-hcC-C-----cccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 111223455554 31 0 12222111 000 0 1258999999997 88888866666666666666
Q ss_pred HHH
Q 042970 457 ELA 459 (489)
Q Consensus 457 ~~~ 459 (489)
+.+
T Consensus 587 ~~L 589 (608)
T PRK01021 587 QAM 589 (608)
T ss_pred HHh
Confidence 664
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.40 E-value=4e-05 Score=75.18 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=83.6
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhCC--CCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchH---hhh
Q 042970 282 VVYVCLGSICN-LTSSQLIELGLGLEASK--KPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQV---MIL 355 (489)
Q Consensus 282 vVyvs~GS~~~-~~~~~~~~~~~al~~~~--~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~---~ll 355 (489)
.+.+..|++.. ...+.+.+.+..+...+ .++++.-........... ........+++.+.+++|+. .++
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~ 270 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLA-----RLRELGLGDRVRFLGYVSDEELAALY 270 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHH-----HHHHcCCCCeEEECCCCChhHHHHHH
Confidence 35566677654 22344444444444433 455544332221111000 00112236789999999875 467
Q ss_pred cCCCccccccc----cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 356 SHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 356 ~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
..+++ +|.. |..+++.||+++|+|+|+....+ ....+ +. .|..+.. -+.+++
T Consensus 271 ~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~--~~~~~~~---------------~~~~~~ 326 (365)
T cd03809 271 RGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD--AALYFDP---------------LDPEAL 326 (365)
T ss_pred hhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--ceeeeCC---------------CCHHHH
Confidence 78887 5533 33457999999999999865421 22222 22 2444432 478899
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHH
Q 042970 432 ETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 432 ~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
.++|.+++.|++....+.+++++..
T Consensus 327 ~~~i~~l~~~~~~~~~~~~~~~~~~ 351 (365)
T cd03809 327 AAAIERLLEDPALREELRERGLARA 351 (365)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999866666666665433
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.32 E-value=0.0017 Score=65.17 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=50.9
Q ss_pred EEecccchHhhhcCCCcccccccc----ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCcccccc
Q 042970 344 LIRGWVPQVMILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEE 419 (489)
Q Consensus 344 ~v~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~ 419 (489)
++.++....+++...++ ||.-+ =-+++.||+++|+|+|+.-..+ | ..+ +.-+-|...
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~----------- 347 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY----------- 347 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec-----------
Confidence 35566666779988888 88774 3568889999999999985433 2 333 233333222
Q ss_pred ccccccccHHHHHHHHHHhccCC
Q 042970 420 EKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 420 ~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
-+.+++.+++.++|.++
T Consensus 348 ------~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 348 ------DDGKGFVRATLKALAEE 364 (462)
T ss_pred ------CCHHHHHHHHHHHHccC
Confidence 25678999999998754
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.0027 Score=67.22 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCeEEecccch-HhhhcCCCcccccc---ccC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
.++|++.+|.++ ..++..+++ ||. +.| -+++.||+.+|+|+|+.... .....| +.-..|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 468888898876 557888888 664 455 45788999999999997643 344455 355568877655
Q ss_pred cccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 455 (489)
..+.+++.+++.+++.+......+++++++.
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 4566677777766665332222566555443
No 97
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.29 E-value=0.00058 Score=67.17 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=79.5
Q ss_pred CeEEEEEeCCcc--c-CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhc-CCCeEEecccc---hH
Q 042970 280 SSVVYVCLGSIC--N-LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWVP---QV 352 (489)
Q Consensus 280 ~~vVyvs~GS~~--~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~p---q~ 352 (489)
++.|+|++=... . ...+.+.++++++...+.++++........... +-..+..... .+|+.+.+-++ ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~----i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI----INEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH----HHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 458888885443 3 335778899999988876666655332211100 1111111111 46788876554 45
Q ss_pred hhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 353 MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 353 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
.++.++++ +|+.++.+- .||.+.|||.|.+- +-+ ... +.|..+.+ - ..++++|.
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~-~~g~nvl~-v--------------g~~~~~I~ 330 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGR-LRADSVID-V--------------DPDKEEIV 330 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhh-hhcCeEEE-e--------------CCCHHHHH
Confidence 67889998 998886555 99999999999873 311 111 22322221 1 25789999
Q ss_pred HHHHHhcc
Q 042970 433 TAINILMD 440 (489)
Q Consensus 433 ~ai~~il~ 440 (489)
++++++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999653
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.28 E-value=0.0026 Score=67.55 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=59.4
Q ss_pred CCCeEEeccc-ch---HhhhcC-C---Cccccccc---cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeE
Q 042970 340 GRGLLIRGWV-PQ---VMILSH-P---AVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVS 407 (489)
Q Consensus 340 ~~~~~v~~~~-pq---~~ll~~-~---~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~ 407 (489)
.++|.+.++. +. .+++.+ + ++ ||.- =|+ .++.||+++|+|+|+.-. ....-.| +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 4567776664 32 234432 2 34 6643 233 488899999999998644 3455566 35556888
Q ss_pred ecccCCccccccccccccccHHHHHHHHHHhc----cCChhHHHHHHHHHH
Q 042970 408 VGVEVPLKFGEEEKIGVLVKKDDVETAINILM----DDGEERDVRRKRAKE 454 (489)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il----~~~~~~~~~~~~a~~ 454 (489)
++.. +++.++++|.+++ +|++..+.+.+++++
T Consensus 691 Vdp~---------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 691 IDPY---------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7644 6788888888765 677666666666544
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=0.00063 Score=64.91 Aligned_cols=207 Identities=15% Similarity=0.100 Sum_probs=109.0
Q ss_pred CCceEEeC-cccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCcccCC---HHHHHHHHHHHH--hCCC
Q 042970 237 QGKVWCIG-PVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLT---SSQLIELGLGLE--ASKK 310 (489)
Q Consensus 237 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~~~---~~~~~~~~~al~--~~~~ 310 (489)
+-+..||| |+....+... +...+.+-+....+++++.+--||..+-= ...+...+..+. ..+.
T Consensus 155 g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~ 223 (381)
T COG0763 155 GLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDL 223 (381)
T ss_pred CCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 34588999 5433222110 23444444544445669999999976511 112222333333 2467
Q ss_pred CEEEEEecCCchhhhhhhhchhhHHHHhc-CCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcC
Q 042970 311 PFIWVTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG 389 (489)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 389 (489)
++++.+....... +-..+..... .-+.++.+.-- .+++..+++ .+.-+|- -++|+..+|+|||+.= -
T Consensus 224 ~~vlp~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Y--k 291 (381)
T COG0763 224 KFVLPLVNAKYRR------IIEEALKWEVAGLSLILIDGEK-RKAFAAADA--ALAASGT-ATLEAALAGTPMVVAY--K 291 (381)
T ss_pred eEEEecCcHHHHH------HHHHHhhccccCceEEecCchH-HHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEE--e
Confidence 7887765433111 1011100000 01222222111 235667777 7777774 4578889999999861 1
Q ss_pred cchh---hHHHHHHHhcc--------eeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 042970 390 DQFC---NEKLIVEVLRI--------GVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEEL 458 (489)
Q Consensus 390 DQ~~---na~~v~e~~g~--------G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 458 (489)
=-+. .+.+.. +... |..+-++ -.+...+++.|.+++..++.|++..+.+++.-.+|+..
T Consensus 292 ~~~it~~iak~lv-k~~yisLpNIi~~~~ivPE---------liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~ 361 (381)
T COG0763 292 VKPITYFIAKRLV-KLPYVSLPNILAGREIVPE---------LIQEDCTPENLARALEELLLNGDRREALKEKFRELHQY 361 (381)
T ss_pred ccHHHHHHHHHhc-cCCcccchHHhcCCccchH---------HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH
Confidence 1122 222222 2111 1111111 01235889999999999999986666777777777666
Q ss_pred HHHHHhhCCChHHHHHHHHHHH
Q 042970 459 AKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 459 ~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
++ ++++++.+.+.+++.+
T Consensus 362 l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 362 LR----EDPASEIAAQAVLELL 379 (381)
T ss_pred Hc----CCcHHHHHHHHHHHHh
Confidence 54 4457777777776654
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.22 E-value=0.004 Score=62.69 Aligned_cols=81 Identities=19% Similarity=0.053 Sum_probs=54.4
Q ss_pred CCCeEEecccchHh---hhcCCCccccccc---cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHH---HhcceeEec
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVE---VLRIGVSVG 409 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e---~~g~G~~l~ 409 (489)
.++|.+.+++|+.+ +|..+++ +|+- -|+ .++.||+++|+|+|+.-..+. ..-+.+ .-+.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe-
Confidence 46899999998754 6778887 6642 233 378899999999998643221 111112 23455543
Q ss_pred ccCCccccccccccccccHHHHHHHHHHhccCCh
Q 042970 410 VEVPLKFGEEEKIGVLVKKDDVETAINILMDDGE 443 (489)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 443 (489)
.++++++++|.+++++++
T Consensus 377 ----------------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhCCH
Confidence 278899999999998764
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.18 E-value=6.8e-05 Score=72.99 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=127.3
Q ss_pred HHhhchHHHHHHHhhcCCCCcEEE--ECCCCc-chHHHHHHcCCCcEEEecchHHHHHHHhhhhhcccCCCCCCCCcccc
Q 042970 100 SHSMLQLPFENLFSEQSPKPCCII--SDMGYP-WTVDTAAKFNVPRIVFHGFSCFCLFCLHILRDSKVHENVTSDSEYFK 176 (489)
Q Consensus 100 ~~~~~~~~l~~ll~~~~~~~D~VI--~D~~~~-~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (489)
........+.+++++ .+||+|| .|.+.. +++.+|..++||.+-+... ..+. . ..
T Consensus 51 ~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs~------------------d--~~ 107 (346)
T PF02350_consen 51 STGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRSG------------------D--RT 107 (346)
T ss_dssp HHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S---------------------TT
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCcc------------------c--cC
Confidence 334456677788887 7999987 565554 7899999999997764221 1100 0 00
Q ss_pred CCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhc-CCceEEeCcccCCCccchh
Q 042970 177 VPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAK-QGKVWCIGPVSLCNKESID 255 (489)
Q Consensus 177 ~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~-~~~~~~vGp~~~~~~~~~~ 255 (489)
-++| .+..+...+ .-++..+..+-..-+- + .+... +.+++.+|....+.-....
T Consensus 108 -~g~~------------------de~~R~~i~--~la~lhf~~t~~~~~~--L--~~~G~~~~rI~~vG~~~~D~l~~~~ 162 (346)
T PF02350_consen 108 -EGMP------------------DEINRHAID--KLAHLHFAPTEEARER--L--LQEGEPPERIFVVGNPGIDALLQNK 162 (346)
T ss_dssp -SSTT------------------HHHHHHHHH--HH-SEEEESSHHHHHH--H--HHTT--GGGEEE---HHHHHHHHHH
T ss_pred -CCCc------------------hhhhhhhhh--hhhhhhccCCHHHHHH--H--HhcCCCCCeEEEEChHHHHHHHHhH
Confidence 0121 223333222 3355566665443221 1 11111 2578888854332110000
Q ss_pred hhhcCCCCCCCchhh--hhhccCCCCCeEEEEEeCCcccCC-H---HHHHHHHHHHHhC-CCCEEEEEecCCchhhhhhh
Q 042970 256 KVERGNKAAIDVPEC--LTWLDSQQPSSVVYVCLGSICNLT-S---SQLIELGLGLEAS-KKPFIWVTRVGNKLEELEKW 328 (489)
Q Consensus 256 ~~~~~~~~~~~~~~~--~~~l~~~~~~~vVyvs~GS~~~~~-~---~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~ 328 (489)
. . ..+.. ...+.. .+++.++|++=...+.. + ..+.+++.++.+. ++++||.........
T Consensus 163 --~-~-----~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~----- 228 (346)
T PF02350_consen 163 --E-E-----IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS----- 228 (346)
T ss_dssp --H-T-----TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH-----
T ss_pred --H-H-----HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH-----
Confidence 0 0 01111 122222 45679999985555544 3 3445566666665 778888886432211
Q ss_pred hchhhHHHHhc-CCCeEEecccch---HhhhcCCCccccccccChhhHH-HHHHhCCcEeecCCcCcchhhHHHHHHHhc
Q 042970 329 LVEENFEERIK-GRGLLIRGWVPQ---VMILSHPAVGGFLTHCGWNSSL-EGISAGVQMLTWPLFGDQFCNEKLIVEVLR 403 (489)
Q Consensus 329 ~l~~~~~~~~~-~~~~~v~~~~pq---~~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~e~~g 403 (489)
..+.+... -+|+++..-+++ ..+|.++++ +|+.+| +++ ||.++|+|.|.+ -|+...=.-+ ..|
T Consensus 229 ---~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~ 296 (346)
T PF02350_consen 229 ---DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERG 296 (346)
T ss_dssp ---HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTT
T ss_pred ---HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhc
Confidence 11112121 148888776654 567889999 999999 666 999999999999 4444333333 334
Q ss_pred ceeEecccCCccccccccccccccHHHHHHHHHHhccC
Q 042970 404 IGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDD 441 (489)
Q Consensus 404 ~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~ 441 (489)
..+.+ ..+.++|.+++.+++.+
T Consensus 297 ~nvlv----------------~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 297 SNVLV----------------GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp SEEEE----------------TSSHHHHHHHHHHHHH-
T ss_pred ceEEe----------------CCCHHHHHHHHHHHHhC
Confidence 44443 26899999999999975
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.17 E-value=8.1e-06 Score=66.08 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=77.1
Q ss_pred eEEEEEeCCcccCC---HHHHHHHHHHHHhCCCC-EEEEEecCCchhhhhhhhchhhHHHHhcCCCeE--Eecccch-Hh
Q 042970 281 SVVYVCLGSICNLT---SSQLIELGLGLEASKKP-FIWVTRVGNKLEELEKWLVEENFEERIKGRGLL--IRGWVPQ-VM 353 (489)
Q Consensus 281 ~vVyvs~GS~~~~~---~~~~~~~~~al~~~~~~-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--v~~~~pq-~~ 353 (489)
..+|||-||....+ .-.-.++++.|.+.|+. .++..|.+... .++......+..++. ..+|-|- .+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHH
Confidence 37999999988521 11122466777777775 45556654211 222222111233443 4566775 66
Q ss_pred hhcCCCccccccccChhhHHHHHHhCCcEeecCCc----CcchhhHHHHHHHhccee
Q 042970 354 ILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF----GDQFCNEKLIVEVLRIGV 406 (489)
Q Consensus 354 ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~e~~g~G~ 406 (489)
....+++ +|.|+|.||++|.|..|+|.|+++.- -.|-.-|..++ +.|.=.
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~ 130 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLY 130 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEE
Confidence 7777888 99999999999999999999999963 46888999885 666543
No 103
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.15 E-value=0.00018 Score=70.64 Aligned_cols=137 Identities=11% Similarity=0.149 Sum_probs=87.7
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchH---hhhcCCCc
Q 042970 284 YVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQV---MILSHPAV 360 (489)
Q Consensus 284 yvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~---~ll~~~~~ 360 (489)
++..|++.. .+.+..++++++..+.++++.-.+.. . +.+.. ...+|+.+.+++|+. .++..+++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~-~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPE-L---------DRLRA-KAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChh-H---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 445566553 34566777888877777665543321 1 11211 236799999999985 46778888
Q ss_pred cccccccChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhc
Q 042970 361 GGFLTHCGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILM 439 (489)
Q Consensus 361 ~~~I~HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il 439 (489)
-++-+.-|+| ++.||+++|+|+|+....+ +...+ +.-+.|..++.. +.+.++++|.+++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~---------------~~~~la~~i~~l~ 324 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ---------------TVESLAAAVERFE 324 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC---------------CHHHHHHHHHHHH
Confidence 2222334444 5679999999999986433 33445 355678777543 7888999999999
Q ss_pred cCC-hhHHHHHHHHH
Q 042970 440 DDG-EERDVRRKRAK 453 (489)
Q Consensus 440 ~~~-~~~~~~~~~a~ 453 (489)
+|+ ..++.++++++
T Consensus 325 ~~~~~~~~~~~~~~~ 339 (351)
T cd03804 325 KNEDFDPQAIRAHAE 339 (351)
T ss_pred hCcccCHHHHHHHHH
Confidence 887 33344444443
No 104
>PLN00142 sucrose synthase
Probab=98.02 E-value=0.0055 Score=65.24 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=58.1
Q ss_pred CCCeEEec----ccchHhhhc----CCCccccccc---cChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeE
Q 042970 340 GRGLLIRG----WVPQVMILS----HPAVGGFLTH---CGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVS 407 (489)
Q Consensus 340 ~~~~~v~~----~~pq~~ll~----~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~ 407 (489)
.+++.+.+ ..+..++.. .+++ ||.- -|+| ++.||+++|+|+|+... ....-.| +.-.-|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 35565544 333344443 2345 6653 4555 78999999999998644 3455556 35556877
Q ss_pred ecccCCccccccccccccccHHHHHHHHHH----hccCChhHHHHHHHHHHH
Q 042970 408 VGVEVPLKFGEEEKIGVLVKKDDVETAINI----LMDDGEERDVRRKRAKEF 455 (489)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~----il~~~~~~~~~~~~a~~l 455 (489)
++.. +.+.++++|.+ +++|++..+.+.+++++-
T Consensus 714 V~P~---------------D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~r 750 (815)
T PLN00142 714 IDPY---------------HGDEAANKIADFFEKCKEDPSYWNKISDAGLQR 750 (815)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7644 56666666654 567886666776666443
No 105
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.99 E-value=0.0017 Score=64.17 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCCeEEecccch-HhhhcCCCccccccc--cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKF 416 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~ 416 (489)
.+++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .+...+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 457888777766 458888888444444 23458999999999999964321 233445 35567777753
Q ss_pred cccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 042970 417 GEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAK 460 (489)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 460 (489)
-+.++++++|..+++|++..+.+.+++++.++.+.
T Consensus 330 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 330 ---------GDIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred ---------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 48899999999999998777788888887765543
No 106
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.99 E-value=0.007 Score=61.86 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=51.5
Q ss_pred CCCeE-Eecccch--HhhhcCCCccccccc---cChh-hHHHHHHhCCcEeecCCcC--cchhhHHHHHHHhcceeEecc
Q 042970 340 GRGLL-IRGWVPQ--VMILSHPAVGGFLTH---CGWN-SSLEGISAGVQMLTWPLFG--DQFCNEKLIVEVLRIGVSVGV 410 (489)
Q Consensus 340 ~~~~~-v~~~~pq--~~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~g~G~~l~~ 410 (489)
+.++. ...|-.+ ..+++.+++ +|.- -|+| +.+||+.+|+|.|+.-..+ |.-.+...- +..+.|...+.
T Consensus 336 ~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~ 412 (466)
T PRK00654 336 PGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD 412 (466)
T ss_pred CCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC
Confidence 34554 3456332 256788888 7753 3554 7889999999999875432 211111000 12266777754
Q ss_pred cCCccccccccccccccHHHHHHHHHHhcc
Q 042970 411 EVPLKFGEEEKIGVLVKKDDVETAINILMD 440 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~ 440 (489)
-+++++.++|.++++
T Consensus 413 ---------------~d~~~la~~i~~~l~ 427 (466)
T PRK00654 413 ---------------FNAEDLLRALRRALE 427 (466)
T ss_pred ---------------CCHHHHHHHHHHHHH
Confidence 478999999999875
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.0019 Score=61.91 Aligned_cols=325 Identities=14% Similarity=0.123 Sum_probs=171.4
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCcch-hhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHR-AIVTIVTTPVNA-ARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rG-H~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
+++||+ +.+|++=.+.-+-+|.++|.+.+ .+..++.+.... ..+.... ++...+..|.+. +.-+
T Consensus 2 ~~~Kv~-~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~---------le~~~i~~pdy~--L~i~-- 67 (383)
T COG0381 2 KMLKVL-TIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV---------LELFGIRKPDYD--LNIM-- 67 (383)
T ss_pred CceEEE-EEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH---------HHHhCCCCCCcc--hhcc--
Confidence 345554 45788899999999999999986 776666555333 2233331 222222111111 1111
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEE--ECCCCc-chHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCII--SDMGYP-WTVDTAAKFNVPRIVFHGFSCFCLFCLHILR 160 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI--~D~~~~-~~~~~A~~lgIP~v~l~~~~~~~~~~~~~~~ 160 (489)
.....+...+......+.+++.+ .+||+|+ .|..+. +++.+|...+||+.-+-..--+
T Consensus 68 --------~~~~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt--------- 128 (383)
T COG0381 68 --------KPGQTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT--------- 128 (383)
T ss_pred --------ccCCCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc---------
Confidence 00112334445567788888888 8999987 455554 6688999999999864211000
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccccCCCCCCCCChHHHHHHHHHhcccCcEEEecChhhhhhHHHHHHHhhcCC-c
Q 042970 161 DSKVHENVTSDSEYFKVPGLPDQIEFTKVQLPIFPSDDMKDINEQMLAADKKTFGIIINTVEELESAYFREYKNAKQG-K 239 (489)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~~~~~~~~~~~-~ 239 (489)
.... +|. ++.+++.. .-++..+..|-..-+ . -.+...++ +
T Consensus 129 ------------~~~~---~PE------------------E~NR~l~~--~~S~~hfapte~ar~--n--Ll~EG~~~~~ 169 (383)
T COG0381 129 ------------GDLY---FPE------------------EINRRLTS--HLSDLHFAPTEIARK--N--LLREGVPEKR 169 (383)
T ss_pred ------------CCCC---CcH------------------HHHHHHHH--HhhhhhcCChHHHHH--H--HHHcCCCccc
Confidence 0000 111 11111111 111122222211100 0 11223333 4
Q ss_pred eEEeCcccCCCccchhhhhcCCCCCCCchhhhhh-ccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh----C-CCCEE
Q 042970 240 VWCIGPVSLCNKESIDKVERGNKAAIDVPECLTW-LDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA----S-KKPFI 313 (489)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~----~-~~~~v 313 (489)
++-+|-...+.-.. . .... ..+...... +.. +.+..+.+|+=-..+.. +.+..++.++.+ . ++.+|
T Consensus 170 IfvtGnt~iDal~~---~--~~~~-~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~vi 241 (383)
T COG0381 170 IFVTGNTVIDALLN---T--RDRV-LEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVI 241 (383)
T ss_pred eEEeCChHHHHHHH---H--Hhhh-ccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEE
Confidence 66666432210000 0 0000 001122211 222 23448888875555554 456666655543 3 44455
Q ss_pred EEEecCCchhhhhhhhchhhHHHHhc-CCCeEE---ecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcC
Q 042970 314 WVTRVGNKLEELEKWLVEENFEERIK-GRGLLI---RGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG 389 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v---~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 389 (489)
..+..+.. .++ + .+ .... ..++.+ .+|.+...++.++-+ ++|.+| |-.-||-..|+|.+++=..-
T Consensus 242 yp~H~~~~---v~e---~-~~-~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~T 310 (383)
T COG0381 242 YPVHPRPR---VRE---L-VL-KRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTT 310 (383)
T ss_pred EeCCCChh---hhH---H-HH-HHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCC
Confidence 44433311 111 1 11 2222 346665 456788889999988 999988 45679999999999998888
Q ss_pred cchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCC
Q 042970 390 DQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 390 DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
++|. ++ +.|.-+.+ ..+.+.|.+++.++++|+
T Consensus 311 ERPE---~v--~agt~~lv----------------g~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 311 ERPE---GV--EAGTNILV----------------GTDEENILDAATELLEDE 342 (383)
T ss_pred CCcc---ce--ecCceEEe----------------CccHHHHHHHHHHHhhCh
Confidence 9985 23 33433434 257799999999999987
No 108
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.91 E-value=0.00038 Score=69.81 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred CCCeEEecccchHh---hhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
..++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+... ......+ +..+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC-
Confidence 45788999999865 444433333765543 4579999999999998643 3355566 455578777533
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
-+.+++.++|.++++|++..+.++++|++.-+. .-+.....++|+
T Consensus 362 -------------~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~-------~f~~~~~~~~~~ 406 (407)
T cd04946 362 -------------PTPNELVSSLSKFIDNEEEYQTMREKAREKWEE-------NFNASKNYREFA 406 (407)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHhHHHhc
Confidence 578999999999999886666666666655433 344445555543
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.89 E-value=0.011 Score=60.61 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=51.1
Q ss_pred CCCeEE-ecccch--HhhhcCCCccccccc---cCh-hhHHHHHHhCCcEeecCCcC--cchhhHHHHHHHhcceeEecc
Q 042970 340 GRGLLI-RGWVPQ--VMILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFG--DQFCNEKLIVEVLRIGVSVGV 410 (489)
Q Consensus 340 ~~~~~v-~~~~pq--~~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~g~G~~l~~ 410 (489)
..++.+ ..+... ..+++.+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+...- ...|.|...+.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 467764 344322 246778888 6643 122 37789999999999876543 221111111 12346777754
Q ss_pred cCCccccccccccccccHHHHHHHHHHhcc
Q 042970 411 EVPLKFGEEEKIGVLVKKDDVETAINILMD 440 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~ 440 (489)
.+++++.+++.+++.
T Consensus 427 ---------------~~~~~l~~~i~~~l~ 441 (476)
T cd03791 427 ---------------YNADALLAALRRALA 441 (476)
T ss_pred ---------------CCHHHHHHHHHHHHH
Confidence 478899999999885
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.85 E-value=0.0068 Score=62.15 Aligned_cols=95 Identities=20% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCeEEecccchHhhhcCCCcccccccc----ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHh------cceeEec
Q 042970 340 GRGLLIRGWVPQVMILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVL------RIGVSVG 409 (489)
Q Consensus 340 ~~~~~v~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~------g~G~~l~ 409 (489)
.+++.+.+...-.++++.+++ +|... --+++.||+++|+|+|+- |.......+ +.. ..|...+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 478888886666788888888 66443 345889999999999994 444455555 352 2676665
Q ss_pred ccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 410 VEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
. .+.+++.++|.++++|++..+.+.+++++..
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3 4889999999999999866666666665433
No 111
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.85 E-value=0.015 Score=59.52 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEecCCc-hhhhhhhhchhhHHHHhcCCCeEEecccchH---hhhc
Q 042970 282 VVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVTRVGNK-LEELEKWLVEENFEERIKGRGLLIRGWVPQV---MILS 356 (489)
Q Consensus 282 vVyvs~GS~~~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~---~ll~ 356 (489)
.+++..|.+.. -..+.+.+.+..+.+.+.++++.-.+... ...+. .+..+ .+.++.+....+.. .+++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~------~~~~~-~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALR------ELAER-YPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHH------HHHHH-CCCcEEEEEcCCHHHHHHHHH
Confidence 34555666654 22333444444444445666555333211 11111 11111 24566655544543 4778
Q ss_pred CCCcccccccc---Chh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHh------cceeEecccCCccccccccccccc
Q 042970 357 HPAVGGFLTHC---GWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVL------RIGVSVGVEVPLKFGEEEKIGVLV 426 (489)
Q Consensus 357 ~~~~~~~I~Hg---G~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~------g~G~~l~~~~~~~~~~~~~~~~~~ 426 (489)
.+++ +|.-. |+| +.+||+++|+|+|+-...+ ....| +.. +.|...+. -
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~---------------~ 422 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE---------------Y 422 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC---------------C
Confidence 8888 77432 444 7789999999999875532 22223 232 67777753 4
Q ss_pred cHHHHHHHHHHhcc
Q 042970 427 KKDDVETAINILMD 440 (489)
Q Consensus 427 ~~~~l~~ai~~il~ 440 (489)
+++++.++|.+++.
T Consensus 423 d~~~la~~i~~~l~ 436 (473)
T TIGR02095 423 DPGALLAALSRALR 436 (473)
T ss_pred CHHHHHHHHHHHHH
Confidence 78899999999886
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.83 E-value=0.0002 Score=62.31 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCeEEecccch---HhhhcCCCccccccc----cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVPQ---VMILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~pq---~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
..++.+..+.++ ..++..+++ +|+. |...++.||+.+|+|+|+. |...+...+ +..+.|...+.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--
Confidence 568888899973 557888888 8776 5667999999999999975 466666666 46667877753
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKE 454 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 454 (489)
.+.+++.++|.+++.|++..+.+.+++++
T Consensus 143 -------------~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -------------NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 48999999999999987666666666664
No 113
>PLN02316 synthase/transferase
Probab=97.77 E-value=0.057 Score=59.30 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=67.7
Q ss_pred CCCeEEecccchH---hhhcCCCcccccccc---Ch-hhHHHHHHhCCcEeecCCcC--cchhhH----HHHH--HHhcc
Q 042970 340 GRGLLIRGWVPQV---MILSHPAVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFG--DQFCNE----KLIV--EVLRI 404 (489)
Q Consensus 340 ~~~~~v~~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na----~~v~--e~~g~ 404 (489)
++++.+....+.. .+++.+++ |+.-+ |+ .+.+||+++|+|.|+....+ |.-... .+.. ..-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3456655444443 57888888 88543 32 47889999999988865433 221111 0000 01245
Q ss_pred eeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 405 GVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 405 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
|...+. .+++.|..+|.++|. .|.+....++...+++++..-|-.+.+++.+
T Consensus 977 Gflf~~---------------~d~~aLa~AL~raL~------~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 977 GFSFDG---------------ADAAGVDYALNRAIS------AWYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred eEEeCC---------------CCHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 666643 588899999999996 3445555566666666555555444444443
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.77 E-value=0.00042 Score=68.88 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=83.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHH-HhcCCCeEEecccchHhh---
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEE-RIKGRGLLIRGWVPQVMI--- 354 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~pq~~l--- 354 (489)
+..++|.||.+....+++.+..-.+.|++.+.-.+|........... +-.-+.. .+.++.+.+..+.++.+-
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~----l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEAR----LRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHH----HHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHH----HHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 34599999999999999999988899998888888887655432211 2112222 223567888887776543
Q ss_pred hcCCCccc-cccccChhhHHHHHHhCCcEeecCCcCc-chhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 355 LSHPAVGG-FLTHCGWNSSLEGISAGVQMLTWPLFGD-QFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 355 l~~~~~~~-~I~HgG~~s~~eal~~GvP~l~~P~~~D-Q~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
+..+|+.+ -...+|.+|++|||+.|||+|.+|--.= ...-+..+ ..+|+.-.+-. -..+-+.
T Consensus 359 ~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA~---------------s~~eYv~ 422 (468)
T PF13844_consen 359 YQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIAD---------------SEEEYVE 422 (468)
T ss_dssp GGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-S---------------SHHHHHH
T ss_pred hhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcCC---------------CHHHHHH
Confidence 34566611 1346788999999999999999994322 22234455 47777754422 2344455
Q ss_pred HHHHHhccCChhHHHHHHHHH
Q 042970 433 TAINILMDDGEERDVRRKRAK 453 (489)
Q Consensus 433 ~ai~~il~~~~~~~~~~~~a~ 453 (489)
.|+ ++-+|+++.+.+|++.+
T Consensus 423 ~Av-~La~D~~~l~~lR~~Lr 442 (468)
T PF13844_consen 423 IAV-RLATDPERLRALRAKLR 442 (468)
T ss_dssp HHH-HHHH-HHHHHHHHHHHH
T ss_pred HHH-HHhCCHHHHHHHHHHHH
Confidence 555 45567755555555444
No 115
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.61 E-value=0.06 Score=56.07 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=52.4
Q ss_pred CeEEecccchH-hhhcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccc
Q 042970 342 GLLIRGWVPQV-MILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKF 416 (489)
Q Consensus 342 ~~~v~~~~pq~-~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~ 416 (489)
++.+.++.++. .+++.+++ ||.-+ | -++++||+++|+|+|+.-..+... + .. |.+..+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll-------- 664 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLT-------- 664 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEe--------
Confidence 46666777764 48888888 87633 3 457889999999999987654321 3 12 222222
Q ss_pred cccccccccccHHHHHHHHHHhccCC
Q 042970 417 GEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
.-+.+++.++|.++|.|+
T Consensus 665 --------~~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 665 --------YKTSEDFVAKVKEALANE 682 (794)
T ss_pred --------cCCHHHHHHHHHHHHhCc
Confidence 136889999999999877
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0008 Score=53.72 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=69.6
Q ss_pred EEEEeCCcccCCHHH--HHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEeccc--c-hHhhhcC
Q 042970 283 VYVCLGSICNLTSSQ--LIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWV--P-QVMILSH 357 (489)
Q Consensus 283 Vyvs~GS~~~~~~~~--~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--p-q~~ll~~ 357 (489)
++||.||....=.+. ..++..-.+.-..++|+.+|.... .| -.+..+.+|. + -..+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp--------vagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP--------VAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc--------ccccEEEeechHHHHHHHhhc
Confidence 789999984311111 112333333345678888876542 22 1234444543 3 3567777
Q ss_pred CCccccccccChhhHHHHHHhCCcEeecCCcC--------cchhhHHHHHHHhcceeEe
Q 042970 358 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG--------DQFCNEKLIVEVLRIGVSV 408 (489)
Q Consensus 358 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~e~~g~G~~l 408 (489)
+++ +|+|+|.||++.++..++|.|++|-.. .|-..|..++ +.+.=...
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~ 121 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVAC 121 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEE
Confidence 777 999999999999999999999999754 3677788886 66655444
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.52 E-value=0.0049 Score=61.20 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=72.6
Q ss_pred CCCeEEecccchHh---hhcCCCccccccc----cCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEeccc
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFLTH----CGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVE 411 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~ 411 (489)
..++.+.+++|+.+ +++.+++ +|.. .|+ .++.||+++|+|+|+.... .+...+ +.-..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeC-
Confidence 46788889998654 5888888 7753 343 4678999999999997653 344445 35556765532
Q ss_pred CCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 042970 412 VPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIM 481 (489)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (489)
..+.++++++|.++++|++. ..+.+++++ .+.+.-+-....+++.+.+.
T Consensus 328 -------------~~d~~~la~~I~~ll~d~~~-~~~~~~ar~-------~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 -------------PMTSDSIISDINRTLADPEL-TQIAEQAKD-------FVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred -------------CCCHHHHHHHHHHHHcCHHH-HHHHHHHHH-------HHHHhCCHHHHHHHHHHHHH
Confidence 25899999999999998732 233333332 22233444455556655554
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.49 E-value=0.073 Score=54.68 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCeEEecccchHhhhcCCCcccccc---ccCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEeccc-CCc
Q 042970 340 GRGLLIRGWVPQVMILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVE-VPL 414 (489)
Q Consensus 340 ~~~~~v~~~~pq~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~-~~~ 414 (489)
.+++.+.++.+...++..+++ +|. .-|+ .+++||+++|+|+|+.-..+ .+...| +.-.-|..++.. +
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~-- 446 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEE-- 446 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcc--
Confidence 457888889888889999998 775 3344 48889999999999975421 233445 354467666521 0
Q ss_pred ccccccccccccc-HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVK-KDDVETAINILMDDGEERDVRRKRAKEFEELAK 460 (489)
Q Consensus 415 ~~~~~~~~~~~~~-~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 460 (489)
.+..-+ .+.++++|.++++ ++..+.+.++|.+.++.+.
T Consensus 447 -------~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 447 -------EDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred -------ccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcC
Confidence 000112 7889999999995 5566677778777665543
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.45 E-value=0.019 Score=51.70 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCCeEEecccch----HhhhcCCCccccccccC----hhhHHHHHHhCCcEeecCCcCc
Q 042970 340 GRGLLIRGWVPQ----VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFGD 390 (489)
Q Consensus 340 ~~~~~v~~~~pq----~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~D 390 (489)
..|+.+.+++++ ..++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 568888888632 223444777 887776 6899999999999999877553
No 120
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.27 E-value=0.24 Score=49.07 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=52.6
Q ss_pred CCCeEEecccchHh---hhcCCCccccc------cccCh-hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEec
Q 042970 340 GRGLLIRGWVPQVM---ILSHPAVGGFL------THCGW-NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVG 409 (489)
Q Consensus 340 ~~~~~v~~~~pq~~---ll~~~~~~~~I------~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~ 409 (489)
.+|+++.+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 57999999998765 57788883321 22333 358999999999998753 2223 2333 33332
Q ss_pred ccCCccccccccccccccHHHHHHHHHHhccCC
Q 042970 410 VEVPLKFGEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
.-+.+++.++|.+++.++
T Consensus 324 ---------------~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 ---------------ADDPEEFVAAIEKALLED 341 (373)
T ss_pred ---------------CCCHHHHHHHHHHHHhcC
Confidence 137899999999977544
No 121
>PRK14099 glycogen synthase; Provisional
Probab=97.01 E-value=0.52 Score=48.39 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=29.1
Q ss_pred CCCcEEEEecC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 5 ASEFHILLLPF--------LAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 5 ~~~~~vl~~~~--------p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|++||||+++. |+.|++ .-.|.++|+++||+|.++.|-
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCC
Confidence 46789999874 334444 557889999999999999864
No 122
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.025 Score=56.66 Aligned_cols=135 Identities=20% Similarity=0.246 Sum_probs=95.0
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHh-----cCCCeEEecccch-
Q 042970 278 QPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERI-----KGRGLLIRGWVPQ- 351 (489)
Q Consensus 278 ~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~v~~~~pq- 351 (489)
++.-+||+||+......++.+..-+..|+..+--++|..+++.+.+ +...++... +...+++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 3456999999999999999999888888888889999888754332 222333222 2456666666654
Q ss_pred --HhhhcCCCcccccc---ccChhhHHHHHHhCCcEeecCCcCcchh--hHHHHHHHhcceeEecccCCccccccccccc
Q 042970 352 --VMILSHPAVGGFLT---HCGWNSSLEGISAGVQMLTWPLFGDQFC--NEKLIVEVLRIGVSVGVEVPLKFGEEEKIGV 424 (489)
Q Consensus 352 --~~ll~~~~~~~~I~---HgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~ 424 (489)
.+=+..+|+ |.. =||+.|..|+|..|||+|..+ ++||- |+.-++..+|+-..+-
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA--------------- 561 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA--------------- 561 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc---------------
Confidence 334455666 654 599999999999999999996 88885 5555544555554443
Q ss_pred cccHHHHHHHHHH
Q 042970 425 LVKKDDVETAINI 437 (489)
Q Consensus 425 ~~~~~~l~~ai~~ 437 (489)
.-.++-|+.+|+-
T Consensus 562 ~s~~dYV~~av~~ 574 (620)
T COG3914 562 DSRADYVEKAVAF 574 (620)
T ss_pred CCHHHHHHHHHHh
Confidence 2467778888853
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.92 E-value=0.52 Score=48.36 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=47.3
Q ss_pred CCCeEEecccch-HhhhcCCCccccccc---cC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEeccc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVE 411 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~ 411 (489)
.+++++.+|..+ ..++..+++ ||.. -| -+++.||+++|+|+|+... ..+...| +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 478888888655 457888998 8753 45 4588999999999998754 3455666 466678777543
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.87 E-value=0.0027 Score=52.57 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=49.6
Q ss_pred CCCeEEecccch-HhhhcCCCccccccc--cC-hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCcc
Q 042970 340 GRGLLIRGWVPQ-VMILSHPAVGGFLTH--CG-WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLK 415 (489)
Q Consensus 340 ~~~~~v~~~~pq-~~ll~~~~~~~~I~H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~ 415 (489)
.+|+.+.+|+++ .++++.+++.+..+. .| .+++.|++.+|+|+|+.+. .....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~--~---- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV--A---- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE---T----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE--C----
Confidence 459999999865 557888998555442 23 4899999999999999865 122333 356777666 2
Q ss_pred ccccccccccccHHHHHHHHHHhccC
Q 042970 416 FGEEEKIGVLVKKDDVETAINILMDD 441 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~il~~ 441 (489)
-+++++.++|.++++|
T Consensus 120 ----------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ----------NDPEELAEAIERLLND 135 (135)
T ss_dssp ----------T-HHHHHHHHHHHHH-
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 4899999999999865
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.65 E-value=0.019 Score=47.75 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=66.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDML 88 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (489)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.++.++. .. . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~-------~~--k----~ 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPS-------PR--K----S 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecC-------CC--C----c
Confidence 577777766666 567899999999999999885443222211 3788887642 10 0 0
Q ss_pred CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcC-CCcEEEec
Q 042970 89 PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP---WTVDTAAKFN-VPRIVFHG 147 (489)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~---~~~~~A~~lg-IP~v~l~~ 147 (489)
..... . .. .+.+++++ .+||+|.+..... .+..++...+ +|.+....
T Consensus 57 -~~~~~-------~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 57 -PLNYI-------K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -cHHHH-------H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 00111 1 12 67888888 8999998776543 3455677888 88886433
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.43 E-value=0.026 Score=54.87 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=77.4
Q ss_pred CCCeEEecccchHhhh---cCCCccccccc-------cCh------hhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhc
Q 042970 340 GRGLLIRGWVPQVMIL---SHPAVGGFLTH-------CGW------NSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLR 403 (489)
Q Consensus 340 ~~~~~v~~~~pq~~ll---~~~~~~~~I~H-------gG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g 403 (489)
.+|+.+.+|+|+.++. .. +.+++... +.+ +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 4689999999997764 33 33222221 111 1266789999999985 456778888 6999
Q ss_pred ceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 042970 404 IGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQ 478 (489)
Q Consensus 404 ~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (489)
+|+.++ +.+++.+++.++. .++...|++|+++++++++ .|.--.+++.+++.
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 999884 3457888888854 4667789999999998876 35555666666554
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.37 E-value=0.0047 Score=47.56 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=45.2
Q ss_pred chhhhhhccCCCCCeEEEEEeCCcccC---CH--HHHHHHHHHHHhCCCCEEEEEecCC
Q 042970 267 VPECLTWLDSQQPSSVVYVCLGSICNL---TS--SQLIELGLGLEASKKPFIWVTRVGN 320 (489)
Q Consensus 267 ~~~~~~~l~~~~~~~vVyvs~GS~~~~---~~--~~~~~~~~al~~~~~~~v~~~~~~~ 320 (489)
...+..|+...+.+|.|+||+||.... .. ..+..++++++++|..+|.++....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 356778999988899999999999873 22 4678899999999999999997654
No 128
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.36 E-value=0.88 Score=42.49 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhH
Q 042970 15 FLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLA 94 (489)
Q Consensus 15 ~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (489)
..-.-|+.-+-.+-++|.++||+|.+-+-... .+.+.... .||.+..+. ..+.. ...
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Ig--------k~g~~--------tl~ 63 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIG--------KHGGV--------TLK 63 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeec--------ccCCc--------cHH
Confidence 34456889999999999999999987654322 23333322 278887765 12111 111
Q ss_pred HHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 95 SKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 95 ~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
..+.... .-...+.+++.+ .+||+.+. -.++.+..+|-.+|+|.+.+.-
T Consensus 64 ~Kl~~~~-eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D 112 (346)
T COG1817 64 EKLLESA-ERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVD 112 (346)
T ss_pred HHHHHHH-HHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecC
Confidence 1222221 223467788888 89999998 5678899999999999999744
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.27 E-value=0.2 Score=48.33 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=38.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLK 51 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~ 51 (489)
|||++-....|++.=+.++.++|+++ +.+|++++.+.+.+.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58999999999999999999999998 99999999886655544
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.76 E-value=0.1 Score=52.82 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=80.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHH-HhcCCCeEEecccchHhh----
Q 042970 280 SSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEE-RIKGRGLLIRGWVPQVMI---- 354 (489)
Q Consensus 280 ~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~pq~~l---- 354 (489)
..|||.+|--.-..+|+.++.-++.|...+..++|..+.+...+.- +-..... ...++.+++.+-+.-.+=
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~r----f~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQR----FRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHH----HHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 4589999988888999999999999999999999998866533211 0000101 123666766555443332
Q ss_pred -hcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchh-hHHHHHHHhcceeEe
Q 042970 355 -LSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFC-NEKLIVEVLRIGVSV 408 (489)
Q Consensus 355 -l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~-na~~v~e~~g~G~~l 408 (489)
|..-.+.-+.+ -|+.|.++.|+.|||||.+|.-.--.. -+..+ ...|+|..+
T Consensus 834 ~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hli 887 (966)
T KOG4626|consen 834 QLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLI 887 (966)
T ss_pred hhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHH
Confidence 22222222343 468899999999999999997543333 33445 488888744
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.75 E-value=0.96 Score=44.31 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=39.9
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLK 51 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~ 51 (489)
++|||++-....|++.=..++.+.|+++ +.+|++++.+.+.+.++
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 5789999999999999999999999998 99999999886666543
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.60 E-value=0.91 Score=44.32 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=67.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceE-EEEeeCCcccCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIR-LVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 85 (489)
|||++-....|++.=...+.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++ ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~---------~~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLD---------RKKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeC---------hhhh--
Confidence 68999999999999999999999997 8999999988666555433 3443 23322 1000
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (489)
. . . ...+. ... .+...++. .++|++|.-........++...|.|...
T Consensus 62 ~-~---~-~~~~~----~~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 62 K-A---G-ERKLA----NQF-HLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred c-c---h-HHHHH----HHH-HHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 0 0 00011 111 12333455 6999999655555667788888988765
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.58 E-value=0.63 Score=46.68 Aligned_cols=176 Identities=9% Similarity=0.084 Sum_probs=98.0
Q ss_pred hhhccCCCCCeEEEEEeCCcccC------CH----HHHHHHHHHHHhCCCCEEEEEec-------CCchhhhhhhhchhh
Q 042970 271 LTWLDSQQPSSVVYVCLGSICNL------TS----SQLIELGLGLEASKKPFIWVTRV-------GNKLEELEKWLVEEN 333 (489)
Q Consensus 271 ~~~l~~~~~~~vVyvs~GS~~~~------~~----~~~~~~~~al~~~~~~~v~~~~~-------~~~~~~~~~~~l~~~ 333 (489)
..|+.....+++|-||....... +. +.+.++++.+.+.++++++.--. ..+.. .-..
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~------~~~~ 298 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM------VALN 298 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH------HHHH
Confidence 34554333445788886654311 21 23344555555668887765421 11111 1112
Q ss_pred HHHHhc-CCCeEE-e-cccch--HhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeE-
Q 042970 334 FEERIK-GRGLLI-R-GWVPQ--VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVS- 407 (489)
Q Consensus 334 ~~~~~~-~~~~~v-~-~~~pq--~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~- 407 (489)
+.+... +.++++ . ++-+. ..+++++++ +|..==| ++.-|+..|||.+.+++ | +-....+ +.+|..-.
T Consensus 299 l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~ 371 (426)
T PRK10017 299 LRQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMA 371 (426)
T ss_pred HHHhcccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEE
Confidence 222222 233332 2 23343 368888887 8854434 34557789999999987 3 4444455 58888755
Q ss_pred ecccCCccccccccccccccHHHHHHHHHHhccCChhH-HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHc
Q 042970 408 VGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEER-DVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQ 482 (489)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (489)
.+.+ .++.++|.+.+.++++|.++. +.+++++.+++++. .+.+.+++..+-+
T Consensus 372 ~~~~-------------~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~~----------~~~~~~~~~~~~~ 424 (426)
T PRK10017 372 IDIR-------------HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQTG----------MQMVQSVLERIGE 424 (426)
T ss_pred echh-------------hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcc
Confidence 5555 689999999999999876431 23344444444432 2445566665543
No 134
>PRK14098 glycogen synthase; Provisional
Probab=95.45 E-value=0.34 Score=49.74 Aligned_cols=80 Identities=8% Similarity=0.036 Sum_probs=53.5
Q ss_pred CCCeEEecccchH---hhhcCCCcccccccc---Ch-hhHHHHHHhCCcEeecCCcC--cchhhHHHHHHHhcceeEecc
Q 042970 340 GRGLLIRGWVPQV---MILSHPAVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFG--DQFCNEKLIVEVLRIGVSVGV 410 (489)
Q Consensus 340 ~~~~~v~~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~g~G~~l~~ 410 (489)
++++.+..+++.. .+++.+++ |+..+ |. .+.+||+++|+|.|+....+ |.-.+ .. +.-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 5678888888764 57888888 77543 22 36789999999888876543 22111 11 12356766643
Q ss_pred cCCccccccccccccccHHHHHHHHHHhc
Q 042970 411 EVPLKFGEEEKIGVLVKKDDVETAINILM 439 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il 439 (489)
.+++.+.++|.+++
T Consensus 436 ---------------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 ---------------YTPEALVAKLGEAL 449 (489)
T ss_pred ---------------CCHHHHHHHHHHHH
Confidence 47899999999876
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.35 E-value=1.9 Score=42.17 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=66.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
||||++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++.. |.++-+-. . +.. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~-~-------~~~-~~- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIP-M-------PLG-HG- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEe-c-------ccc-cc-
Confidence 579999999999999999999999997 9999999988655554433 34433211 0 110 00
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (489)
... +.. ...+...++. .++|++|.=.-..-...++...|+|.-.
T Consensus 63 ----~~~----~~~-----~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 ----ALE----IGE-----RRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----hhh----hHH-----HHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 000 1123344555 6999999655455556667777777654
No 136
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.29 E-value=0.19 Score=43.32 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=62.4
Q ss_pred ecCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCcchh--hHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCC
Q 042970 13 LPFLAQGHLIPMFDMARLL-ANH-RAIVTIVTTPVNAA--RLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDML 88 (489)
Q Consensus 13 ~~~p~~GHv~P~l~La~~L-~~r-GH~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (489)
+..++.||+.-|+.|.+.+ .++ .++..+++...... .+.+. +.. .+...++..+| .... .
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~-~~~--~~~~~~~~~~~---------r~r~----v 66 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQL-EKS--SSKRHKILEIP---------RARE----V 66 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHH-HHh--ccccceeeccc---------eEEE----e
Confidence 3345569999999999999 444 55555555443322 22211 111 01111333332 1100 0
Q ss_pred CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHc------CCCcEEE
Q 042970 89 PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP--WTVDTAAKF------NVPRIVF 145 (489)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~--~~~~~A~~l------gIP~v~l 145 (489)
. .......+.........+.-+.+. +||+||+..-.. ..+.+|..+ |.+.|.+
T Consensus 67 ~-q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 67 G-QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred c-hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 0 122333344444455566666665 999999887444 567788888 8998885
No 137
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.24 E-value=3.7 Score=41.07 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCE-EEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccc-h---HhhhcCCCcccccccc---
Q 042970 296 SQLIELGLGLEASKKPF-IWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVP-Q---VMILSHPAVGGFLTHC--- 367 (489)
Q Consensus 296 ~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~p-q---~~ll~~~~~~~~I~Hg--- 367 (489)
+.+..+++|+...+.++ ++.+|..... . ..++....+.. + ..+++.+++ ||.-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~~-------~---------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~E 317 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSPF-------T---------AGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVD 317 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCcc-------c---------ccceEEecCcCCHHHHHHHHHhCCE--EEECCccc
Confidence 44677888888765443 3344432110 1 23555555542 2 345666777 77543
Q ss_pred -ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHH
Q 042970 368 -GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAI 435 (489)
Q Consensus 368 -G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 435 (489)
--++++||+++|+|+|+....+ ....+ +. +-|..++.. +.+.|++++
T Consensus 318 gfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~---------------d~~~La~~~ 365 (405)
T PRK10125 318 NYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE---------------EVLQLAQLS 365 (405)
T ss_pred cCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC---------------CHHHHHhcc
Confidence 3457889999999999997764 22233 23 568877644 677777653
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.11 E-value=0.02 Score=48.40 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHh
Q 042970 23 PMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHS 102 (489)
Q Consensus 23 P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (489)
-+..|+++|.++||+|+++++........ ....++.++.++.+... ...... .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~---~---------- 58 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WPLRLL---R---------- 58 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SGGGHC---C----------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hhhhhH---H----------
Confidence 46789999999999999998654433111 01236788777643211 000000 1
Q ss_pred hchHHHHHHH--hhcCCCCcEEEECCCCc-chHHHHH-HcCCCcEEEec
Q 042970 103 MLQLPFENLF--SEQSPKPCCIISDMGYP-WTVDTAA-KFNVPRIVFHG 147 (489)
Q Consensus 103 ~~~~~l~~ll--~~~~~~~D~VI~D~~~~-~~~~~A~-~lgIP~v~l~~ 147 (489)
....+.+++ ++ .+||+|.+..... ....++. ..++|++....
T Consensus 59 -~~~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 59 -FLRRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHHHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -HHHHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 112344444 55 8999999776332 3334444 88999998543
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.88 E-value=0.27 Score=42.24 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred hCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHhhchHHHHHHH
Q 042970 33 NHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHSMLQLPFENLF 112 (489)
Q Consensus 33 ~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 112 (489)
++||+|+|++........ +|++.+.+..+ .... ....+.......-..........+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~-------~~~~-~~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPP-------RGPT-PGTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCC-------CCCC-CCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 579999999955333211 26777765421 1111 1111111112222222334555666666
Q ss_pred hhcCCCCcEEEECCCCcchHHHHHHc-CCCcEEEec
Q 042970 113 SEQSPKPCCIISDMGYPWTVDTAAKF-NVPRIVFHG 147 (489)
Q Consensus 113 ~~~~~~~D~VI~D~~~~~~~~~A~~l-gIP~v~l~~ 147 (489)
++ +..||+||+.+---.+..+-+.+ ++|.+.|.=
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 55 78999999997666777788888 899999743
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.48 E-value=3.3 Score=38.95 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=37.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~ 52 (489)
|||++-....|++.=+.++.++|+++ +-+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 68999999999999999999999998 489999998866554443
No 141
>PHA01633 putative glycosyl transferase group 1
Probab=94.18 E-value=1.4 Score=42.61 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCeEEe---cccchH---hhhcCCCccccccc---cCh-hhHHHHHHhCCcEeecCC------cCcc------hhhHHH
Q 042970 340 GRGLLIR---GWVPQV---MILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPL------FGDQ------FCNEKL 397 (489)
Q Consensus 340 ~~~~~v~---~~~pq~---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~------~~DQ------~~na~~ 397 (489)
.+++.+. +++++. .+++.+++ ||.- -|+ .+++||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4678776 455554 56788888 8764 344 468899999999998633 2333 222322
Q ss_pred HHH-HhcceeEecccCCccccccccccccccHHHHHHHHHHhccC
Q 042970 398 IVE-VLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDD 441 (489)
Q Consensus 398 v~e-~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~ 441 (489)
.++ ..|.|...+ ..++++++++|.+++..
T Consensus 278 ~~~~~~g~g~~~~---------------~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH---------------KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec---------------CCCHHHHHHHHHHHHhc
Confidence 211 234454443 47999999999998543
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.02 E-value=0.5 Score=35.93 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=50.9
Q ss_pred ccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhH
Q 042970 366 HCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEER 445 (489)
Q Consensus 366 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~ 445 (489)
+|-..-+.|++.+|+|+|.-.. +.... ...-|...-.- -+.+++.+.|..++.|+++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~--------------~~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY--------------NDPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE--------------CCHHHHHHHHHHHHCCHHHH
Confidence 4555688999999999999854 22222 22223222221 28999999999999998544
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 446 DVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 446 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
+++++++++.- ++.-+..+-++.|+
T Consensus 67 ~~ia~~a~~~v-------~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARERV-------LKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHH-------HHhCCHHHHHHHHH
Confidence 44444444333 33555555555554
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=93.80 E-value=0.78 Score=44.50 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=27.9
Q ss_pred ccchHh---hhcCCCcccccc---ccC-hhhHHHHHHhCCcEeecCCc
Q 042970 348 WVPQVM---ILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLF 388 (489)
Q Consensus 348 ~~pq~~---ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~ 388 (489)
++|+.+ +++.+++ +|. ..| -.++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 466544 5788888 663 333 45789999999999997654
No 144
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.40 E-value=5 Score=38.67 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=36.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~ 48 (489)
||||++-....|++.=..++.+.|+++ +.+|++++.+...+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 589999999999999999999999997 99999999875444
No 145
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.31 E-value=0.75 Score=46.69 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=68.7
Q ss_pred EecccchHh---hhcCCCcccccc---ccChh-hHHHHHHhCCc----EeecCCcCcchhhHHHHHHHhcceeEecccCC
Q 042970 345 IRGWVPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQ----MLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVP 413 (489)
Q Consensus 345 v~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~ 413 (489)
+...+++.+ ++..+++ |+. +-|+| ++.||+++|+| +|+--+.+ .+..+ +-|+.++.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC---
Confidence 445566655 4677888 775 44766 66699999999 55543332 22223 34666654
Q ss_pred ccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHc
Q 042970 414 LKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQ 482 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (489)
.+.+.++++|.++|+++.+ ..+++.+++++.+. .-+...-+++|++++.+
T Consensus 407 ------------~d~~~lA~aI~~aL~~~~~--er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 407 ------------YDIDGMADAIARALTMPLE--EREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred ------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 4889999999999986522 44445555555543 35667778888888753
No 146
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.25 E-value=0.42 Score=39.58 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
|++.+||+.+.++-+|-.-..-++..|+++|++|+++....-.+.+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~ 51 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI 51 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999999999999999999999987655555554443
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.20 E-value=1.5 Score=45.34 Aligned_cols=93 Identities=11% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCeEEecccc--h-HhhhcCCCcccccccc---ChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 341 RGLLIRGWVP--Q-VMILSHPAVGGFLTHC---GWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 341 ~~~~v~~~~p--q-~~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
..|.+.++.. + ..++..+.+ +|.-+ |.++.+||+.+|+|+| .......| +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 5777888887 3 457777777 88766 7789999999999999 33344455 355556555 2
Q ss_pred cccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAK 460 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 460 (489)
+..+|.++|..+|.+.+....+...|-+.+.+..
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999998777777777777776654
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.15 E-value=8.8 Score=37.17 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=64.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEE-EEeeCCcccCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRL-VEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 85 (489)
|||++-..+.|++.=..++.+.|++. +.+|++++.+.+.+.++.. +.++- +.++ ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~-------~~~~---- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP-------LGHG---- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC-------Cccc----
Confidence 68999999999999999999999997 9999999987555444332 23332 1111 0000
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (489)
.... . ....+...++. .++|++|.-.-......++...|+|.-.
T Consensus 62 ----~~~~----~-----~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 ----ALEL----T-----ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----chhh----h-----HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0010 0 01123344555 6999999765555556667777777543
No 149
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.53 E-value=1.9 Score=34.58 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=37.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
||++.+.|+-.|...+.-++..|+++|++|++.......+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 589999999999999999999999999999888655444444443
No 150
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.76 E-value=13 Score=35.99 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=68.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
++||+++-....|++.=.+++-+.|+++ +.++++++.+...+.+... +.+.-+- ......
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi----------~~~~~~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVI----------IIDKKK 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhc----------cccccc
Confidence 4789999999999999999999999998 6999999988665544332 1222211 100000
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (489)
. . ........+...++. .++|+||.=.-.+-...++...++|.-.
T Consensus 63 ~------~-------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 63 K------G-------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c------c-------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 0 000112244555666 6899999776666566666677887766
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.79 E-value=16 Score=35.04 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=65.0
Q ss_pred CeEEEEEeCCccc---CCHHHHHHHH----HHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhc-CCCeEEecc---
Q 042970 280 SSVVYVCLGSICN---LTSSQLIELG----LGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIK-GRGLLIRGW--- 348 (489)
Q Consensus 280 ~~vVyvs~GS~~~---~~~~~~~~~~----~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~--- 348 (489)
++.|-|-.|.-.. .+.+....++ ..++..+..++++++.+-..+ .. .-+....+ ...+++-+-
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~-~~-----~~L~~~~~~~~~~~~~~~~~~ 219 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPE-AE-----AALRELLKDNPGVYIWDGTGE 219 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHH-HH-----HHHHHhhcCCCceEEecCCCC
Confidence 4455555554332 5555333333 333344556666665543221 11 11222221 334433222
Q ss_pred cchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchh----hHHHHHHHhcceeEec
Q 042970 349 VPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFC----NEKLIVEVLRIGVSVG 409 (489)
Q Consensus 349 ~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~~v~e~~g~G~~l~ 409 (489)
=|+...|+.++. .|||--=.+.+.||+..|+|+.++|.-. +.. -...+ ++.|+-....
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 367788888887 3455555777889999999999999876 322 22344 3556655554
No 152
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.44 E-value=0.25 Score=42.35 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=23.7
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 17 AQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 17 ~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
..|=-.-++.|+++|+++||+|+++++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 5566778899999999999999999876
No 153
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.15 E-value=15 Score=33.73 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=55.6
Q ss_pred EEEEEeCCccc--CCHHHHHH----HHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhc-----CCCeEE----e
Q 042970 282 VVYVCLGSICN--LTSSQLIE----LGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIK-----GRGLLI----R 346 (489)
Q Consensus 282 vVyvs~GS~~~--~~~~~~~~----~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~v----~ 346 (489)
|.++-.|+... ...++... +...+++.+..+++++..+... .+...++ ...++. .
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~----------~~~s~l~~~l~s~~~i~w~~~d~ 233 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPD----------TVKSILKNNLNSSPGIVWNNEDT 233 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcH----------HHHHHHHhccccCceeEeCCCCC
Confidence 44444444444 33444333 3456667899999998876422 2222111 122221 2
Q ss_pred cccchHhhhcCCCccccccc-cChhhHHHHHHhCCcEeec
Q 042970 347 GWVPQVMILSHPAVGGFLTH-CGWNSSLEGISAGVQMLTW 385 (489)
Q Consensus 347 ~~~pq~~ll~~~~~~~~I~H-gG~~s~~eal~~GvP~l~~ 385 (489)
++=|+-+.|+.++. +|.- --.|..+||+..|+|+.++
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 55699999988876 6654 4567778999999998765
No 154
>PLN02939 transferase, transferring glycosyl groups
Probab=89.29 E-value=9.9 Score=41.84 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCeEEecccchH---hhhcCCCcccccccc---C-hhhHHHHHHhCCcEeecCCcC--cchhh--HHHHHHHhcceeEe
Q 042970 340 GRGLLIRGWVPQV---MILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFG--DQFCN--EKLIVEVLRIGVSV 408 (489)
Q Consensus 340 ~~~~~v~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~e~~g~G~~l 408 (489)
.++|.+..+.+.. .+++.+++ ||.-+ | -.+.+||+++|+|.|+....+ |.-.+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578887877764 47888888 88542 2 237899999999999876544 22111 11110123456655
Q ss_pred cccCCccccccccccccccHHHHHHHHHHhcc
Q 042970 409 GVEVPLKFGEEEKIGVLVKKDDVETAINILMD 440 (489)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~ 440 (489)
+. .+++.+.++|.+++.
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 43 478888888887764
No 155
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.28 E-value=1.5 Score=44.74 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=62.0
Q ss_pred EecccchHh---hhcCCCcccccc---ccChh-hHHHHHHhCCc---EeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 345 IRGWVPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQ---MLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 345 v~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
+.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|++.-..-. . +...-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~------~-~~~~~g~lv~p---- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA------A-EELSGALLVNP---- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc------h-hhcCCCEEECC----
Confidence 456777655 5778888 764 45666 56799999999 4444321111 1 12223555543
Q ss_pred cccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 042970 415 KFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDI 480 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (489)
-+.+.++++|.++++++.+ ..+.+.++.++.+. .-+...-++++++++
T Consensus 412 -----------~d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -----------YDIDEVADAIHRALTMPLE--ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred -----------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 4789999999999987622 22222222233322 345667777777765
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.11 E-value=8.4 Score=38.86 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=77.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHh-CCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeE-Eecccc-h-Hhh
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEA-SKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLL-IRGWVP-Q-VMI 354 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-v~~~~p-q-~~l 354 (489)
++.++++| ....+..+....++ +++.+=+..+... ..++.+ + .+ -+|++ ..++.+ + .++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~-s~kL~~--L-----~~--y~nvvly~~~~~~~l~~l 344 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM-SSKLMS--L-----DK--YDNVKLYPNITTQKIQEL 344 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc-cHHHHH--H-----Hh--cCCcEEECCcChHHHHHH
Confidence 34577776 13344444444444 4666655443331 122222 2 11 25655 556677 3 679
Q ss_pred hcCCCccccccccC--hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 355 LSHPAVGGFLTHCG--WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 355 l~~~~~~~~I~HgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
+..|++.+-|+||. ..++.||+.+|+|++..=.. ..+...+. . |..... -+.+++.
T Consensus 345 y~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t---~~~~~~i~-~---g~l~~~---------------~~~~~m~ 402 (438)
T TIGR02919 345 YQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET---AHNRDFIA-S---ENIFEH---------------NEVDQLI 402 (438)
T ss_pred HHhccEEEEccccccHHHHHHHHHHcCCcEEEEecc---cCCccccc-C---CceecC---------------CCHHHHH
Confidence 99999999999976 66899999999999987322 11223332 2 444433 4789999
Q ss_pred HHHHHhccCC
Q 042970 433 TAINILMDDG 442 (489)
Q Consensus 433 ~ai~~il~~~ 442 (489)
++|.++|.|+
T Consensus 403 ~~i~~lL~d~ 412 (438)
T TIGR02919 403 SKLKDLLNDP 412 (438)
T ss_pred HHHHHHhcCH
Confidence 9999999987
No 157
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=87.32 E-value=4.3 Score=37.44 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=30.4
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
.++||||+.-=-+. |---+..|+++|.+.| +|++++|.....
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 45789888764432 2345788999998888 799998875554
No 158
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.89 E-value=9.3 Score=33.99 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=40.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
++.+|++.+.++-.|-....-++..|+.+|++|+++......+.+.+...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~ 130 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK 130 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999999999999999999998875544444444433
No 159
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.58 E-value=4.5 Score=44.24 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=64.8
Q ss_pred ccchH---hhhcCCCccccccc---cChh-hHHHHHHhCCc---EeecCCcCcchhhHHHHHHHhc-ceeEecccCCccc
Q 042970 348 WVPQV---MILSHPAVGGFLTH---CGWN-SSLEGISAGVQ---MLTWPLFGDQFCNEKLIVEVLR-IGVSVGVEVPLKF 416 (489)
Q Consensus 348 ~~pq~---~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~e~~g-~G~~l~~~~~~~~ 416 (489)
++|+. +++..+++ ||.- -|+| +..|++++|+| +++++-+. ..+ +.+| -|+.++.
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~----~~l~~~allVnP------ 427 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAG----QSLGAGALLVNP------ 427 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cch----hhhcCCeEEECC------
Confidence 44543 56778888 7754 4888 55699999999 55554332 222 2233 4666654
Q ss_pred cccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCC
Q 042970 417 GEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQP 484 (489)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (489)
.+.+.++++|.++|+.+.+ ..+++.+++.+.++ .-+...-.++|++++.+..
T Consensus 428 ---------~D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 ---------WNITEVSSAIKEALNMSDE--ERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred ---------CCHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 4889999999999983321 23334444444443 2355566777777775543
No 160
>PRK12342 hypothetical protein; Provisional
Probab=85.04 E-value=12 Score=34.59 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCcEEEECCCCc------chHHHHHHcCCCcEEEec
Q 042970 107 PFENLFSEQSPKPCCIISDMGYP------WTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~------~~~~~A~~lgIP~v~l~~ 147 (489)
.+.+.++. .+||+|++...+. -+..+|+.||+|++++..
T Consensus 100 ~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 45556666 5799999876443 378999999999999654
No 161
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=84.95 E-value=9.6 Score=33.77 Aligned_cols=50 Identities=10% Similarity=-0.136 Sum_probs=42.3
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
++.+|++.+.++-.|-....-++..|..+|++|+++....-.+.+.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~ 132 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK 132 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999999977665555555544
No 162
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.07 E-value=1.9 Score=35.31 Aligned_cols=45 Identities=20% Similarity=0.046 Sum_probs=35.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+||++...|+.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888888866666 999999999999999999888666655554
No 163
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.67 E-value=9.9 Score=28.67 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHhh
Q 042970 24 MFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHSM 103 (489)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (489)
++.+++.|.+.|++|. + ++.....+++. |+....+-. ...++
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~~---------Gi~~~~~~~-----ki~~~---------------------- 43 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLREA---------GLPVKTLHP-----KVHGG---------------------- 43 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHHC---------CCcceeccC-----CCCCC----------------------
Confidence 5789999999999983 4 45455555443 444321100 00110
Q ss_pred chHHHHHHHhhcCCCCcEEEECCC---------CcchHHHHHHcCCCcE
Q 042970 104 LQLPFENLFSEQSPKPCCIISDMG---------YPWTVDTAAKFNVPRI 143 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~D~~---------~~~~~~~A~~lgIP~v 143 (489)
.+.+.+++++ .++|+||+-+. ...-..+|...|||++
T Consensus 44 -~~~i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 44 -ILAILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred -CHHHHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 0136667777 89999998542 1234556888899986
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.50 E-value=2.3 Score=34.18 Aligned_cols=37 Identities=8% Similarity=-0.097 Sum_probs=26.0
Q ss_pred cEEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQG---HLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~G---Hv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|||+|+--|-.+ .-.-.++|+.+..+|||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 578888877544 3456899999999999999999655
No 165
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.08 E-value=7.8 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
.|+++.+.+..-|-.-+..++..|.++||+|.++-.....+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~ 46 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEA 46 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHH
Confidence 4799999999999999999999999999999998655444444443
No 166
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=82.07 E-value=24 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=37.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
||++.+.++-.|..-..-++.-|+..|++|++.....-.+.+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 689999999999999999999999999999999765444443333
No 167
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=81.95 E-value=1.5 Score=33.59 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHhh
Q 042970 24 MFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHSM 103 (489)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (489)
++.+|+.|.+.|+++ ++++.....+++. |+....+-.. ...+ +.. ..+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~-----~~~~-~~~----~g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNK-----IGEG-ESP----DGRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEE-----HSTG--GG----THCH----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeee-----cccC-ccC----Cchh----------
Confidence 578999999999665 4566666666654 6664433200 0010 000 0000
Q ss_pred chHHHHHHHhhcCCCCcEEEECCCCcc---------hHHHHHHcCCCcE
Q 042970 104 LQLPFENLFSEQSPKPCCIISDMGYPW---------TVDTAAKFNVPRI 143 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~D~~~~~---------~~~~A~~lgIP~v 143 (489)
.+.+++++ .++|+||+.+.... -..+|...+||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 67778888 89999998764431 1456888888876
No 168
>PRK06849 hypothetical protein; Provisional
Probab=79.71 E-value=8.7 Score=38.19 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
.++++||++.... .-.+.+++.|.++||+|+++....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3577888875333 368999999999999999986653
No 169
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=79.28 E-value=18 Score=28.40 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHH
Q 042970 19 GHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFF 98 (489)
Q Consensus 19 GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (489)
++-.-++.+++.|.+.|+++. +++...+.+++. |+....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 356678999999999999983 455555555543 5665444311 11
Q ss_pred HHHhhchHHHHHHHhhcCCCCcEEEECCC-------CcchHHHHHHcCCCcEE
Q 042970 99 NSHSMLQLPFENLFSEQSPKPCCIISDMG-------YPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 99 ~~~~~~~~~l~~ll~~~~~~~D~VI~D~~-------~~~~~~~A~~lgIP~v~ 144 (489)
-.+.+.+++++ .++|+||.-+- .+.....|-..|||+++
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12356677777 89999998432 23556679999999996
No 170
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=78.99 E-value=5.5 Score=36.67 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=26.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+. |.--+..|+++|.+. |+|+++++.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 35555543222 334478899999988 7999999875544
No 171
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=78.94 E-value=6 Score=36.21 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=61.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDM 87 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (489)
||||+.-=-+ =|---+-.|+++|+ .+++|+++++..+..-...... ..-.++...+. ........
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEec---------cceEEecC
Confidence 3444443222 24444677888888 9999999998865543221110 00012222211 11001111
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECC----------CC---cchHHHHHHcCCCcEEEecchH
Q 042970 88 LPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDM----------GY---PWTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~----------~~---~~~~~~A~~lgIP~v~l~~~~~ 150 (489)
.+. +-..-.+..++++ ..||+||+.. ++ .+|+.=|..+|||.|.+|...-
T Consensus 66 TPa-----------DCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~ 128 (252)
T COG0496 66 TPA-----------DCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYR 128 (252)
T ss_pred ChH-----------HHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhc
Confidence 111 1233356677766 6799999753 11 2456668889999999876543
No 172
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=78.93 E-value=13 Score=34.17 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 042970 23 PMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 23 P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
-.-.|+++|+++||+|++++|-.
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35578999999999999998654
No 173
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.63 E-value=8.2 Score=36.10 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCeE-EecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhH--HHHHHHhcceeEecccCCccc
Q 042970 340 GRGLL-IRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNE--KLIVEVLRIGVSVGVEVPLKF 416 (489)
Q Consensus 340 ~~~~~-v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na--~~v~e~~g~G~~l~~~~~~~~ 416 (489)
.+|.+ +..|-...++|.++++ .|--.|- .+-.++-.|||+|.+|-.+-|+.-. .+=..-+|..+.+-..
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----- 364 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----- 364 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----
Confidence 34543 3456666778877777 6644442 2345678899999999999997643 3322345666666433
Q ss_pred cccccccccccHHHHHHHHHHhccCChhHHHHH
Q 042970 417 GEEEKIGVLVKKDDVETAINILMDDGEERDVRR 449 (489)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~ 449 (489)
.+..-..+.++++.|++....+|
T Consensus 365 ----------~aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 365 ----------EAQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred ----------chhhHHHHHHHHhcChHHHHHHH
Confidence 33334445555999995554444
No 174
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=77.78 E-value=6.9 Score=36.11 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCcEEE
Q 042970 105 QLPFENLFSEQSPKPCCII--SDMGYP----WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI--~D~~~~----~~~~~A~~lgIP~v~l 145 (489)
.+.+.+++++ .++|+|| +.+|.. -+..+++.+|||++.|
T Consensus 55 ~~~l~~~l~~--~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 55 EEGLAEFLRE--NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHHh--CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 4477888888 8999998 444432 3567899999999996
No 175
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=77.60 E-value=27 Score=32.30 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCcEEEECCCCc------chHHHHHHcCCCcEEEecc
Q 042970 107 PFENLFSEQSPKPCCIISDMGYP------WTVDTAAKFNVPRIVFHGF 148 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~------~~~~~A~~lgIP~v~l~~~ 148 (489)
.+.+.++. ..||+||+...+. -+..+|+.||+|++++...
T Consensus 103 ~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 45556666 5799999866432 5688999999999997553
No 176
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=77.60 E-value=17 Score=33.60 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=25.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+. |---+..|+++|++ +|+|++++|.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 45666552222 22237889999965 68999999876554
No 177
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.44 E-value=6.2 Score=36.98 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
...+|-+.-.|+.|--.=.=.|+++|.++||.|-+++..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 346788888999999999999999999999999888644
No 178
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.44 E-value=72 Score=30.37 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=59.8
Q ss_pred CCeE-Eecccc---hHhhhcCCCccccccc--cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCc
Q 042970 341 RGLL-IRGWVP---QVMILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPL 414 (489)
Q Consensus 341 ~~~~-v~~~~p---q~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~ 414 (489)
+++. +.+++| +.++|+.++++.|+|+ =|.|+++-.++.|||+++- .+-+.|.-.. +.|+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecCC---
Confidence 6765 456665 5779999999888876 4899999999999999986 5666666644 56666655655
Q ss_pred cccccccccccccHHHHHHHHHHh
Q 042970 415 KFGEEEKIGVLVKKDDVETAINIL 438 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~i 438 (489)
.++...++++=+++
T Consensus 278 ----------~L~~~~v~e~~rql 291 (322)
T PRK02797 278 ----------DLDEDIVREAQRQL 291 (322)
T ss_pred ----------cccHHHHHHHHHHH
Confidence 68888888775543
No 179
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.35 E-value=4.7 Score=35.55 Aligned_cols=44 Identities=11% Similarity=-0.105 Sum_probs=33.9
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
++.+||++.-.|+.|=+.-...|+++|.++||+|.++.++...+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 35678888888875544447999999999999999998775443
No 180
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=76.10 E-value=33 Score=31.83 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=26.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+. |-.-+..|+++|.+.| +|++++|.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 35555543332 4456889999998888 799998876554
No 181
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=75.93 E-value=12 Score=34.65 Aligned_cols=37 Identities=5% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCCcEEEECCCCc------chHHHHHHcCCCcEEE
Q 042970 107 PFENLFSEQSPKPCCIISDMGYP------WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~------~~~~~A~~lgIP~v~l 145 (489)
.+.+++++ .++|+||--..-+ -+..+++++|||++.|
T Consensus 56 ~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 46677887 8999888332211 2466799999999996
No 182
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=75.28 E-value=33 Score=29.81 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=55.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCe--EEEE-eCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAI--VTIV-TTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~--V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
|||+|+.++.. .-+..+.++|.+++|+ |.++ +.+........... .++....+.. ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~--------~~--- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE--------KN--- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG--------GG---
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc--------cC---
Confidence 68999877664 5566778899999998 4444 33333221121111 1223222210 00
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC-cchHHHHHHcCCCcEEEec
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY-PWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~-~~~~~~A~~lgIP~v~l~~ 147 (489)
. .......+++.+.+++ .+||++|+-.+. .-...+-+.....++-+++
T Consensus 61 ---~----------~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 61 ---F----------QPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp ---S----------SSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred ---C----------CchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 0 0001234567778888 899999977654 3445555666666676554
No 183
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.23 E-value=44 Score=33.81 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
.++.+.++. .+||++|..+ ....+|+++|||++.+.
T Consensus 367 ~e~~~~i~~--~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFT--EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhh--cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 356667777 7999999875 35789999999998753
No 184
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.73 E-value=10 Score=39.35 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=48.5
Q ss_pred chHhhhcCCCcccccc---ccChh-hHHHHHHhCCcEeecCCcC-cchhhHHHHHHHh-cceeEecccCCcccccccccc
Q 042970 350 PQVMILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFG-DQFCNEKLIVEVL-RIGVSVGVEVPLKFGEEEKIG 423 (489)
Q Consensus 350 pq~~ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~e~~-g~G~~l~~~~~~~~~~~~~~~ 423 (489)
+..+++..+++ +|. +=|+| ++.||+++|+|+|+....+ .... ..+...- ..|+.+....+. +
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~--------~ 534 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFK--------S 534 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCcc--------c
Confidence 46677777888 666 34554 8899999999999986532 2222 2221111 256666533100 1
Q ss_pred ccccHHHHHHHHHHhccC
Q 042970 424 VLVKKDDVETAINILMDD 441 (489)
Q Consensus 424 ~~~~~~~l~~ai~~il~~ 441 (489)
-.-+.+.|++++.++++.
T Consensus 535 ~~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 535 PDESVQQLTQYMYEFCQL 552 (590)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 124667888889888853
No 185
>PRK05973 replicative DNA helicase; Provisional
Probab=74.59 E-value=7.9 Score=35.36 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=39.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
.-+++...|+.|-..-.++++...+.+|+.|.|++.+.....+.....
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 356777788999999999999999889999999998887766655544
No 186
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=74.32 E-value=27 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=25.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+. |---+.+|+++|++ +|+|++++|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 45666553332 33447788899964 68999999875554
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=73.54 E-value=15 Score=31.14 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEE-EEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVT-IVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~-~~~~~ 44 (489)
.++||.+.-.|+.|-..-.+.++..|.++|+.|- |++++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 3689999999999999999999999999999996 55544
No 188
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=71.53 E-value=38 Score=26.86 Aligned_cols=94 Identities=17% Similarity=0.077 Sum_probs=57.6
Q ss_pred EecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCch
Q 042970 12 LLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSI 91 (489)
Q Consensus 12 ~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 91 (489)
|++.... +-.=++.+++.|.+.|.+|. +++...+.+.+. ++....+.. ..+ ....
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~-~~~~------ 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSE-EPQN------ 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccC-CCCC------
Confidence 4444433 55668899999999999883 456555555543 444433310 011 0000
Q ss_pred hhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCC---------CcchHHHHHHcCCCcEE
Q 042970 92 DLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMG---------YPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~---------~~~~~~~A~~lgIP~v~ 144 (489)
-.+.+.+++++ .++|+||.-+. .+.....|-.+|||+++
T Consensus 59 ------------~~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 ------------DKPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ------------CchhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 01456777777 89999998432 24566789999999974
No 189
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=70.98 E-value=19 Score=33.16 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=25.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+ =|---+..|+++|++.| +|+++++.....
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 3455443222 23345778999999988 899998876554
No 190
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.88 E-value=56 Score=27.86 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.4
Q ss_pred CCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
.+.+ +++|+|-| .+.+|...++|+|++.
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444 88888744 7789999999999996
No 191
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=70.12 E-value=7.8 Score=34.27 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=29.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||||+.-=-+. +---+..|+++|.+.||+|+++++..+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 56777765554 55668899999988899999999886654
No 192
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=69.70 E-value=71 Score=31.51 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=36.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
=+++.-.|+.|-..=++++|..+.++|..|.+++.+...+.+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~R 128 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLR 128 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHH
Confidence 355666779999999999999999999999999887666555443
No 193
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.69 E-value=13 Score=30.82 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=37.4
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
++++||++.+.+.-||=.-.--+++.|++.|.+|.....-..
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 478999999999999999999999999999999998754433
No 194
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=69.24 E-value=12 Score=34.69 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhC---CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHH
Q 042970 23 PMFDMARLLANH---RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFN 99 (489)
Q Consensus 23 P~l~La~~L~~r---GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (489)
-+.+|+++|.+. |++|++++|.....-...... ....++...+. +........|. + .
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~~~pl~~~~~~---------~~~yav~GTPa-D---C--- 74 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----YTHPMMIAELG---------PRRFAAEGSPA-D---C--- 74 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----CCCCeEEEEeC---------CCeEEEcCchH-H---H---
Confidence 356677777663 479999998865543222211 11124444332 11111111111 1 1
Q ss_pred HHhhchHHHHHHHhhcCCCCcEEEECC----------CC---cchHHHHHHcCCCcEEEec
Q 042970 100 SHSMLQLPFENLFSEQSPKPCCIISDM----------GY---PWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 100 ~~~~~~~~l~~ll~~~~~~~D~VI~D~----------~~---~~~~~~A~~lgIP~v~l~~ 147 (489)
..-.+..++.. .+||+||+.. ++ .+|+.-|...|||.+.+|.
T Consensus 75 ----V~lal~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 75 ----VLAALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred ----HHHHHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11233344442 4899999753 22 2456668888999999875
No 195
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.23 E-value=15 Score=33.61 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCEEEEEecCCc-hhhhhhhhchhhHHHHhcCCCeEEecc--cch-
Q 042970 279 PSSVVYVCLGSICN---LTSSQLIELGLGLEASKKPFIWVTRVGNK-LEELEKWLVEENFEERIKGRGLLIRGW--VPQ- 351 (489)
Q Consensus 279 ~~~vVyvs~GS~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~--~pq- 351 (489)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..+.... .+...+ +..++ ....+.+.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQ--IAAGL----QNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHH--HHTTH----TTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHH--HHHhc----ccceEeecCCCCHHHH
Confidence 34577777777554 56788999999998877666554443321 111111 11111 1113334332 333
Q ss_pred HhhhcCCCccccccccChhhHHHHHHhCCcEeec
Q 042970 352 VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (489)
Q Consensus 352 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 385 (489)
..++.++++ +|+.-. |.++=|...|+|+|++
T Consensus 178 ~ali~~a~~--~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEESS-HHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEecCC-hHHHHHHHHhCCEEEE
Confidence 568888998 887765 7888999999999998
No 196
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=69.22 E-value=2.1 Score=42.28 Aligned_cols=117 Identities=10% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCeEEe-cccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccc
Q 042970 340 GRGLLIR-GWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGE 418 (489)
Q Consensus 340 ~~~~~v~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~ 418 (489)
.++++.. +..+-.++|..+++ +||-- ...+.|.+..++|++......|.... . -|...+..+ .-.|
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~--rg~~~~~~~-~~pg- 317 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------E--RGFYFDYEE-DLPG- 317 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------T--SSBSS-TTT-SSSS-
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------c--cCCCCchHh-hCCC-
Confidence 4577653 44567899999999 99988 45788999999999988777766622 2 233333210 0000
Q ss_pred cccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 419 EEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
...-+.++|.++|..++.+++ .++++-++..+++-. ..+|.++++.++.++
T Consensus 318 ----~~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 318 ----PIVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp -----EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred ----ceeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 013578899999999886542 455666666666644 356777666666554
No 197
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=69.18 E-value=42 Score=33.17 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=58.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDML 88 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (489)
=||+---|+-|--.=+|+++..|+++| .|.+++.++...+++-...+. ++ +..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~--------------~~~------- 147 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GL--------------PTN------- 147 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CC--------------Ccc-------
Confidence 356666789999999999999999999 999999998888776554432 11 110
Q ss_pred CchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC
Q 042970 89 PSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY 128 (489)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~ 128 (489)
.+....+...+.+.+.+++ .+||++|.|+..
T Consensus 148 -------~l~l~aEt~~e~I~~~l~~--~~p~lvVIDSIQ 178 (456)
T COG1066 148 -------NLYLLAETNLEDIIAELEQ--EKPDLVVIDSIQ 178 (456)
T ss_pred -------ceEEehhcCHHHHHHHHHh--cCCCEEEEeccc
Confidence 0011112234556666677 899999999854
No 198
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=68.49 E-value=19 Score=31.19 Aligned_cols=45 Identities=13% Similarity=-0.102 Sum_probs=38.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
+++.-.|+.|-..=.+.++....+.|..|.+++.+...+.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 567778899999999999999999999999999887777665543
No 199
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=68.10 E-value=23 Score=31.07 Aligned_cols=99 Identities=10% Similarity=0.188 Sum_probs=51.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhh-HHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAAR-LKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
.++-+...+.|-++-...|+++|.++ |+.|.+-++...... ..+... ..+....+| .+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P---------~D---- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLP---------LD---- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE------------S----
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeC---------cc----
Confidence 56777778889999999999999988 899888776444332 322211 122222222 11
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcch--HHHHHHcCCCcEEEe
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWT--VDTAAKFNVPRIVFH 146 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~--~~~A~~lgIP~v~l~ 146 (489)
....++++++. ++||++|.--.-.|. ...|++.|||.+.+.
T Consensus 83 ------------------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ------------------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------------------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------------------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 12356677777 899998855445544 456788899999964
No 200
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=67.99 E-value=22 Score=31.99 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=41.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
++.+|++.+.++-.|-....-++..|..+|++|+++....-.+.+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~ 136 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK 136 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999976655555555443
No 201
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.86 E-value=4.2 Score=35.64 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=27.0
Q ss_pred CcEEEEecCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 042970 7 EFHILLLPFLAQGHLIP------------MFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P------------~l~La~~L~~rGH~V~~~~~~ 44 (489)
..|||+...|++=.+.| -..||+++..|||+|++++.+
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 45677777666666555 368999999999999999887
No 202
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=67.79 E-value=58 Score=33.45 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=42.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLAR 56 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~ 56 (489)
..-+++.-.|+.|-..=.++++.+.+++|..|.+++.+...+.+....+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHH
Confidence 34577777889999999999999999999999999999888877666543
No 203
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=67.55 E-value=1.1e+02 Score=28.62 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=53.4
Q ss_pred CCCeEEecccc---hHhhhcCCCccccccc---cChhh-HHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 340 GRGLLIRGWVP---QVMILSHPAVGGFLTH---CGWNS-SLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 340 ~~~~~v~~~~p---q~~ll~~~~~~~~I~H---gG~~s-~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
.+++.+..+++ ...++..+++ ++.. .|.|. +.||+++|+|+|... .......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC-
Confidence 46788888888 2346666766 6666 35544 599999999996654 33333334 2333465 3322
Q ss_pred CccccccccccccccHHHHHHHHHHhccCC
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDG 442 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 442 (489)
.+.+.+.+++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 26889999999999875
No 204
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=66.96 E-value=14 Score=37.24 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENF 85 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (489)
++||||++-.+++-| +|++.|++-++...+++.|.|.... .+. ... ... .
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~------------~~~--~~~------~~~-----~ 52 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFP------------DDE--LLP------ADS-----F 52 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHh------------ccc--ccc------ccC-----c
Confidence 457899999999877 6899999988665555445333210 000 000 000 0
Q ss_pred CCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcCCCcEE
Q 042970 86 DMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP---WTVDTAAKFNVPRIV 144 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~ 144 (489)
. . ...+.+.+++++ .++|+||.++=.+ ..+.+++++|||+..
T Consensus 53 ~-~--------------~d~~~l~~~a~~--~~iD~Vv~g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 53 S-I--------------LDKSSVQSFLKS--NPFDLIVVGPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred C-c--------------CCHHHHHHHHHH--cCCCEEEECCchHHHHHHHHHHHHcCCCcCC
Confidence 0 0 012345556677 7999999876333 344667789999764
No 205
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=66.87 E-value=34 Score=31.92 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=34.3
Q ss_pred CeEEecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecC
Q 042970 342 GLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWP 386 (489)
Q Consensus 342 ~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 386 (489)
.+.+.+-++-.+++.+++. +||-.+ ..-.||+.+|+|++++.
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEec
Confidence 3445667788899999998 888776 36789999999999985
No 206
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=66.58 E-value=1e+02 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecchH
Q 042970 117 PKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~~ 150 (489)
.-||+++ .|+..- -|..=|.++|||.|.+.-+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 4499975 787554 677789999999999755443
No 207
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=65.79 E-value=81 Score=31.80 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
.++.+++++ .+||+||.++. ...+|+++|+|++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 466677777 79999999964 378899999999874
No 208
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.71 E-value=33 Score=31.39 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=30.0
Q ss_pred chHHHHHHHhhcCCCCcEEEECCCCc-----chHHHHHHcCCCcEEE
Q 042970 104 LQLPFENLFSEQSPKPCCIISDMGYP-----WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~D~~~~-----~~~~~A~~lgIP~v~l 145 (489)
..+.-..++++ ++.|+||+=...- .=..+|.++|||+|.+
T Consensus 184 s~~~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 SEEDNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ChHHHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 34455678888 8999999754332 2366899999999996
No 209
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.87 E-value=67 Score=32.29 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 110 NLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 110 ~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
..+++ .+||++|.. ..+..+|+++|||++.+.
T Consensus 344 ~~~~~--~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEE--YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhh--cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 34445 799999987 346789999999999853
No 210
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.36 E-value=16 Score=26.81 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=31.9
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
..-++++.-+...|..-+-.+|+.|.++|..|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46788889999999999999999999999999876
No 211
>PRK04328 hypothetical protein; Provisional
Probab=62.60 E-value=1.3e+02 Score=27.78 Aligned_cols=48 Identities=10% Similarity=-0.079 Sum_probs=37.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
..-+++.-.|+.|-..=.++++.+-.++|+.+.+++.+...+.+.+..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~ 70 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNM 70 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHH
Confidence 345667778899998888888877778899999999887776655543
No 212
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=62.34 E-value=1e+02 Score=31.18 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
.++.+++++ .+||++|.++. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 467778888 89999999864 478999999999874
No 213
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=62.21 E-value=21 Score=30.60 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=28.7
Q ss_pred hchHHHHHHHhhcCCCCcEEEECCCCcchH--H-H--HHHc-CCCcEEEec
Q 042970 103 MLQLPFENLFSEQSPKPCCIISDMGYPWTV--D-T--AAKF-NVPRIVFHG 147 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~--~-~--A~~l-gIP~v~l~~ 147 (489)
.....+.+++++ .+||+|||-....... . + ...+ ++|.+.+.|
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 455688889999 9999999887654333 1 1 2223 578777654
No 214
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=61.92 E-value=24 Score=32.58 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCII--SDMGYP----WTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI--~D~~~~----~~~~~A~~lgIP~v~l~ 146 (489)
.+.+.+++++ .++++|| +.+|.. -+..+++++|||++.|-
T Consensus 54 ~~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 54 AEGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3477788888 8999988 444442 35678999999999963
No 215
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=61.77 E-value=99 Score=26.15 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=24.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 14 PFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 14 ~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+.+..|-..=.+.|++.|+++|..|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888999999999999999999887
No 216
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=61.48 E-value=2e+02 Score=29.59 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=71.6
Q ss_pred eEEecccchHh---hhcCCCcccccc---ccChhhHH-HHHHhCCc---EeecCCcCcchhhHHHHHHHhcceeEecccC
Q 042970 343 LLIRGWVPQVM---ILSHPAVGGFLT---HCGWNSSL-EGISAGVQ---MLTWPLFGDQFCNEKLIVEVLRIGVSVGVEV 412 (489)
Q Consensus 343 ~~v~~~~pq~~---ll~~~~~~~~I~---HgG~~s~~-eal~~GvP---~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~ 412 (489)
+++.+.+|+.+ ++..+++ ++. ..|+|-+. |.++++.. +|++.-++ -|+ +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa----Gaa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA----GAA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc----cch---hhcCCCEEECC--
Confidence 46677888766 4556777 543 45999665 99998772 34443322 111 24444677754
Q ss_pred CccccccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCC
Q 042970 413 PLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQP 484 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (489)
.+.+.++++|.++|+.+.+ .-++|.+++.+.++ .-.+..=.++|++++..+.
T Consensus 433 -------------~d~~~~A~ai~~AL~m~~~--Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 -------------YDPVRMDETIYVALAMPKA--EQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQA 484 (487)
T ss_pred -------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhcc
Confidence 5899999999999987632 33445555555544 3356677889999887764
No 217
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=61.20 E-value=67 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=22.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~ 44 (489)
+||+++..+..+-+. +|.+.+.+. +++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 689999988744443 556667665 4777765443
No 218
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=60.81 E-value=1.2e+02 Score=26.71 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=45.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCC--eEEEEeCC-cchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRA--IVTIVTTP-VNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH--~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
+||+++..+..+-+ .+|.+.+.+.++ +|.++.+. ...... +.... .++.++.++ +.....
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~~~~~~~-~~A~~-----~gip~~~~~--------~~~~~~ 63 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNKPDAYGL-ERAAQ-----AGIPTFVLS--------LKDFPS 63 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECCccchHH-HHHHH-----cCCCEEEEC--------ccccCc
Confidence 47888887764444 456666776665 66665333 222211 11111 156665543 111100
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY 128 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~ 128 (489)
.....+.+.+++++ .++|++|+-.+.
T Consensus 64 ----------------~~~~~~~~~~~l~~--~~~D~iv~~~~~ 89 (190)
T TIGR00639 64 ----------------REAFDQAIIEELRA--HEVDLVVLAGFM 89 (190)
T ss_pred ----------------hhhhhHHHHHHHHh--cCCCEEEEeCcc
Confidence 01123466777777 899999976543
No 219
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=60.58 E-value=76 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=20.0
Q ss_pred cccccChh------hHHHHHHhCCcEeecCC
Q 042970 363 FLTHCGWN------SSLEGISAGVQMLTWPL 387 (489)
Q Consensus 363 ~I~HgG~~------s~~eal~~GvP~l~~P~ 387 (489)
+++|+|-| .+.+|...++|+|++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 77777644 67799999999999963
No 220
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.54 E-value=73 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 107 PFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
.+.+++++ .++|+||..+ ....+|+++|||++.+
T Consensus 364 ~l~~~i~~--~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACA--AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhh--cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 55677777 7999999885 4478999999999974
No 221
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.79 E-value=48 Score=29.47 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=76.8
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCC
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHP 358 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~ 358 (489)
.++++.|+.|.+.. ..+..|...+..+.++.. .. ...+........+.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs~-~~----------~~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVISP-EL----------TENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEcC-CC----------CHHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 35688887777553 234445556766665532 21 1111111122345544444445556677
Q ss_pred CccccccccChhhHHHHHH----hCCcEeecCCcCcchhh-----HHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 359 AVGGFLTHCGWNSSLEGIS----AGVQMLTWPLFGDQFCN-----EKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 359 ~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
++ +|.--+--.+.+.++ .++++-+ .|.+.. -+.+ ++-++-+.+.+. ++++ .-+.
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G~sP-~la~ 134 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------GASP-KLAK 134 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------CCCh-HHHH
Confidence 77 887777665555544 4554433 344332 2223 232233333222 1222 3345
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 042970 430 DVETAINILMDDGEERDVRRKRAKEFEELAKRA 462 (489)
Q Consensus 430 ~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~ 462 (489)
.|++.|.+++ +++...+-+...++++.+++.
T Consensus 135 ~lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 135 KIRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 6888888877 445567777888888877754
No 222
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.64 E-value=1.1e+02 Score=30.94 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=37.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
.-+++.-.|+.|-..=+++++..+.++|+.|.+++.+...+.+...
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~r 126 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLR 126 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHH
Confidence 3456666779999999999999999899999999988776655443
No 223
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=59.45 E-value=1.1e+02 Score=31.13 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=29.2
Q ss_pred CcEEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 7 EFHILLLPF-LAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 7 ~~~vl~~~~-p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
+.+|++... ...|-..=...|++.|+++|++|..+=+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 345666644 4678999999999999999999987743
No 224
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=59.10 E-value=40 Score=26.83 Aligned_cols=44 Identities=16% Similarity=-0.028 Sum_probs=35.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
++..+.++..|......++..|+++|++|.+.......+.+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHH
Confidence 67788889999999999999999999999999765444444443
No 225
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=58.75 E-value=1.2e+02 Score=31.06 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (489)
.++.+.+++ .+||++|.. .....+|+++|||++.
T Consensus 383 ~e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 355666777 799999987 4567899999999984
No 226
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=58.60 E-value=34 Score=37.24 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.7
Q ss_pred EEecccchHh---hhcCCCccccccc---cChh-hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccc
Q 042970 344 LIRGWVPQVM---ILSHPAVGGFLTH---CGWN-SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKF 416 (489)
Q Consensus 344 ~v~~~~pq~~---ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~ 416 (489)
++.+++++.+ ++..+++ |+.- -|+| .+.|++++|+|-...|+..+--.-+. ++.-|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEECC------
Confidence 4556778765 5677777 6654 3655 66799999775222222122111112 2223676654
Q ss_pred cccccccccccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCC
Q 042970 417 GEEEKIGVLVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQP 484 (489)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (489)
.+.+.++++|.++|+++.+ ..+++.+++++.++ .-+..+-+++|++.+.+..
T Consensus 413 ---------~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 413 ---------NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELREAA 464 (726)
T ss_pred ---------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHH
Confidence 4789999999999986522 23333334444432 3466677777877776653
No 227
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=58.55 E-value=34 Score=31.08 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=37.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
.-+++.-.|+.|-..-..+++.....+|..|.|++.+...+.+.+..
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~ 72 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQM 72 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHH
Confidence 44666677899999999999988888999999999877665554443
No 228
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=58.26 E-value=1.1e+02 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=25.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|+.+...+.. .+.+++.|.+-|-+|..+.+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777776664 888999999999999988655
No 229
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.57 E-value=13 Score=32.38 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=33.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLK 51 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (489)
+||++...++.|=+. ...+.+.|+++|++|.++.++.....+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 578888888766554 8999999999999999998776555444
No 230
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.34 E-value=1.3e+02 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcCCCcEEE
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYP---WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~l 145 (489)
...+.+++++ .+||+|++..-.. .+..+|.++|.|+++-
T Consensus 80 a~~l~~~i~~--~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKK--EKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHH--hCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 3456666666 6899999776443 6788999999999983
No 231
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.25 E-value=55 Score=26.90 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=39.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+.+|++-+..+-+|-.----++..|.+.|++|+........+.+-+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35899999999999999999999999999999999776555544444
No 232
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=57.19 E-value=29 Score=29.53 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCC---cchhhHHHHHHHhhhCCCce-EEEEeeCCcccCCCCCCCCCCCCCCchhhHHHH
Q 042970 23 PMFDMARLLANH-RAIVTIVTTP---VNAARLKTVLARAVQSGLQI-RLVEIQFPWQEAGLPQGCENFDMLPSIDLASKF 97 (489)
Q Consensus 23 P~l~La~~L~~r-GH~V~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (489)
-++..|++|++. |.+|+.++.. ...+.+++.... .|. +.+.+..+.. .. .
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~----~~----~------------ 73 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPAL----AE----Y------------ 73 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGG----TT----C------------
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCccc----cc----c------------
Confidence 368899999876 8898877543 222232222221 133 4444442110 00 0
Q ss_pred HHHHhhchHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcCCCcEEEe
Q 042970 98 FNSHSMLQLPFENLFSEQSPKPCCIISDMGYP---WTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 98 ~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~l~ 146 (489)
........+.+++++ .+||+|+...-.. .+..+|.++|.|++.-.
T Consensus 74 --~~~~~a~~l~~~~~~--~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 74 --DPEAYADALAELIKE--EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp ---HHHHHHHHHHHHHH--HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred --CHHHHHHHHHHHHHh--cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 011234567777777 7999999776443 57788999999999843
No 233
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.10 E-value=96 Score=28.62 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCC-CeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHh
Q 042970 24 MFDMARLLANHR-AIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHS 102 (489)
Q Consensus 24 ~l~La~~L~~rG-H~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (489)
+-..++.|.+.+ .+|.+.+...+.+.+... ...+..+-+.-+|.+....+++...--.... .
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~----~~~~~r~~~RvLp~~~~~~g~~~~~iia~~G-------------P 180 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPA----PLPGERLFARVLPTPESALGFPPKNIIAMQG-------------P 180 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhc----ccCCCEEEEEECCCccccCCCChhhEEEEeC-------------C
Confidence 345667776777 667666666555555431 0112244555555433222222111100001 1
Q ss_pred hchHHHHHHHhhcCCCCcEEEECCCCc----chHHHHHHcCCCcEEE
Q 042970 103 MLQLPFENLFSEQSPKPCCIISDMGYP----WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI~D~~~~----~~~~~A~~lgIP~v~l 145 (489)
...+.-.+++++ .+.|+||+=...- .=..+|..+|||++.+
T Consensus 181 fs~e~n~al~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 181 FSKELNRALFRQ--YGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 233455678888 8999999654322 2256899999999996
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=56.74 E-value=1.1e+02 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=34.8
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchh
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVTTPVNAA 48 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~~~~~~~ 48 (489)
+.-|+++..++.|-..-...||..|+.+ |+.|.+++......
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3456666677999999999999999999 99999998775544
No 235
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=56.66 E-value=1.4e+02 Score=32.49 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=102.7
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhh--hhhhchhhHHHHhcCCCeEEe--cccch---Hh
Q 042970 281 SVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEEL--EKWLVEENFEERIKGRGLLIR--GWVPQ---VM 353 (489)
Q Consensus 281 ~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~v~--~~~pq---~~ 353 (489)
.++|+++=.+..++.......+..|.+.|.+++..+|.....+.. .+-=+...- ++.+..-+.-. +-++. .+
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~-ed~~~~~~TG~efD~ls~~~~~~ 650 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSED-EDVSSMALTGSEFDDLSDEELDD 650 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCC-ccccccccchhhhhcCCHHHHHH
Confidence 489998877777777788889999999999999999876543321 110000000 00000000000 11111 11
Q ss_pred hhcCCCccccccccC---hhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHH
Q 042970 354 ILSHPAVGGFLTHCG---WNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 354 ll~~~~~~~~I~HgG---~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
+..++. ++..+- ---+.|+|+.-.=++.. .+|--.-|-.+ +.+.+|+..... -.+.
T Consensus 651 ~~~~~~---vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApAL-K~AdIGIAMG~~---------------GTdV 709 (972)
T KOG0202|consen 651 AVRRVL---VFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPAL-KKADIGIAMGIS---------------GTDV 709 (972)
T ss_pred Hhhcce---EEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhh-hhcccceeecCC---------------ccHh
Confidence 222222 222221 12356777776666655 57777777777 588888877533 3455
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCCC
Q 042970 431 VETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQPTS 486 (489)
Q Consensus 431 l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 486 (489)
=.+|-+-+|.|. .+. .+-+|++||-+=++++..||+++.+..-+
T Consensus 710 aKeAsDMVL~DD----nFs--------tIvaAVEEGr~IynNik~Fir~~lSsnVg 753 (972)
T KOG0202|consen 710 AKEASDMVLADD----NFS--------TIVAAVEEGRAIYNNIKNFIRYLLSSNVG 753 (972)
T ss_pred hHhhhhcEEecC----cHH--------HHHHHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 566777789887 553 34456789999999999999999886543
No 236
>PRK05595 replicative DNA helicase; Provisional
Probab=56.48 E-value=1.6e+02 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLA-NHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~-~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+++..-|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 55666889999999999999876 569999999888766554443
No 237
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=56.44 E-value=18 Score=35.93 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=28.4
Q ss_pred EEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEE-eCCc
Q 042970 9 HILLLP-FLAQGHLIPMFDMARLLANHRAIVTIV-TTPV 45 (489)
Q Consensus 9 ~vl~~~-~p~~GHv~P~l~La~~L~~rGH~V~~~-~~~~ 45 (489)
+|++.. ..+.|-..-.+.|.++|++||+.|.=+ +.|.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPD 40 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPD 40 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCC
Confidence 344444 448899999999999999999999754 4443
No 238
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=56.37 E-value=1.4e+02 Score=26.79 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=26.8
Q ss_pred EEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 10 ILLLP-FLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 10 vl~~~-~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|.+.. -+..|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 4478999999999999999999998874
No 239
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.96 E-value=21 Score=31.70 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=34.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (489)
.+||++.-.|+.+ ..=.+.|.+.|.+.||+|.++.++.....+..
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 4678777777644 46899999999999999999988865554443
No 240
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=55.81 E-value=1.4e+02 Score=26.19 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC---C-cchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT---P-VNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQG 81 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (489)
++-.|.+++.++.|-....+.+|-+...+|+.|.++-- . ...+. . ... ..+++.+...+.. . .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~-~-~l~----~l~~v~~~~~g~~-----~--~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGER-N-LLE----FGGGVEFHVMGTG-----F--T 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHH-H-HHh----cCCCcEEEECCCC-----C--c
Confidence 45689999999999999999999999999999988721 1 12221 1 111 1136777765421 1 1
Q ss_pred CCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCC
Q 042970 82 CENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGY 128 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~ 128 (489)
+.. ... . .-............+.+.+ .++|+||-|-+.
T Consensus 88 ~~~---~~~-~---e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 88 WET---QDR-E---RDIAAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred ccC---CCc-H---HHHHHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 111 001 1 1112222334445556666 799999999765
No 241
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=54.39 E-value=22 Score=31.08 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=35.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLAN-HRAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~-rGH~V~~~~~~~~~~~~~~ 52 (489)
+||++.-.|+-| ..=...|.++|.+ .||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 578888888766 6669999999999 5999999988866555543
No 242
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=54.11 E-value=16 Score=31.92 Aligned_cols=39 Identities=15% Similarity=-0.028 Sum_probs=32.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
.||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 368888888877777777999999999999999887744
No 243
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=53.91 E-value=1.9e+02 Score=29.41 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=28.2
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
..++.+++++ .+||++|.. .....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~--~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLE--YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhh--cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 3466777777 799999976 34577888999999874
No 244
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=53.36 E-value=1.3e+02 Score=28.91 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=33.0
Q ss_pred cEEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLP-FLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~-~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
+||+|++ =|+-|-..=.-++|..|++.|..|.++++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 5677777 5688999999999999999999888887665443
No 245
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=53.29 E-value=29 Score=29.47 Aligned_cols=33 Identities=27% Similarity=0.118 Sum_probs=25.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEE
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 314 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~ 314 (489)
.||+|+||........++..++++.+.+.--++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~ 35 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVV 35 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 699999999886667788888888877643333
No 246
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=53.29 E-value=63 Score=32.89 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (489)
-+++.-.|+.|-..=++.++..+.++|+.|.|++.+...+.+..
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ 139 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKM 139 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHH
Confidence 45666678999999999999999999999999998876655543
No 247
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=53.01 E-value=2.3e+02 Score=27.59 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCeE-Eecccc---hHhhhcCCCccccccc--cChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCC
Q 042970 340 GRGLL-IRGWVP---QVMILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVP 413 (489)
Q Consensus 340 ~~~~~-v~~~~p---q~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~ 413 (489)
.+++. +.+++| +.++|..++++.|++. =|.|+++-.|+.|+|+++- .+-+++-... +.|+=+.-..+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~--~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK--EQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH--hCCCeEEeccc--
Confidence 35675 466776 5668999999777664 5899999999999999876 5666665555 45666555444
Q ss_pred ccccccccccccccHHHHHHHHHHhcc
Q 042970 414 LKFGEEEKIGVLVKKDDVETAINILMD 440 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~il~ 440 (489)
.++.+.|+++=+.+..
T Consensus 317 -----------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 -----------ELDEALVREAQRQLAN 332 (360)
T ss_pred -----------cCCHHHHHHHHHHHhh
Confidence 7999999999887653
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=52.72 E-value=26 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=39.4
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
...++|+-.|+.|-..=..++|.+|..+|+.|+|++.+.....++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45789999999999999999999999889999999988655554443
No 249
>PRK06321 replicative DNA helicase; Provisional
Probab=52.57 E-value=1.4e+02 Score=30.69 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=34.5
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLAN-HRAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~-rGH~V~~~~~~~~~~~~~~ 52 (489)
|++..-|+.|-..-.+.+|...+. .|..|.|++.+-....+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 566678899999999999999874 5999999988766654443
No 250
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=52.17 E-value=26 Score=33.00 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=54.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChh
Q 042970 291 CNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWN 370 (489)
Q Consensus 291 ~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~ 370 (489)
...+.+..+++.+|+.+.+.+.||.+.++.... .+.++++...+-.+|.. ||=.+-..
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~--------------------rlL~~ld~~~~~~~pK~--~iGySDiT 101 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGAN--------------------RLLPYLDYDLIRANPKI--FVGYSDIT 101 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH--------------------HhhhhCCHHHHhhCCeE--EEEecHHH
Confidence 344566788899999999999999998765432 22344555555566766 77777777
Q ss_pred hHHHHHHh--CCcEeecCCcCc
Q 042970 371 SSLEGISA--GVQMLTWPLFGD 390 (489)
Q Consensus 371 s~~eal~~--GvP~l~~P~~~D 390 (489)
+++-+++. |++.+.-|...+
T Consensus 102 aL~~~l~~~~g~~t~hGp~~~~ 123 (282)
T cd07025 102 ALHLALYAKTGLVTFHGPMLAS 123 (282)
T ss_pred HHHHHHHHhcCceEEECccccc
Confidence 77777653 777777776543
No 251
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.91 E-value=1.5e+02 Score=29.61 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
.++.+.++. .+||++|..+. ...+|+++|||++..
T Consensus 346 ~e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 356677777 79999998844 467899999999853
No 252
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=51.40 E-value=28 Score=34.68 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+++++||++...|+. ...=...|.+.|+++|++|.++.++.....+...
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 456788999888875 5567899999999999999999888666555543
No 253
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=51.39 E-value=1.3e+02 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=16.1
Q ss_pred hhchHHHHHHHhhcCCCCcEEEECC
Q 042970 102 SMLQLPFENLFSEQSPKPCCIISDM 126 (489)
Q Consensus 102 ~~~~~~l~~ll~~~~~~~D~VI~D~ 126 (489)
......+.+++++ .+||+|++-.
T Consensus 86 ~~~~~~l~~~i~~--~~p~~V~t~~ 108 (128)
T PF02585_consen 86 EELVRDLEDLIRE--FRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH--H-ESEEEEE-
T ss_pred HHHHHHHHHHHHH--cCCCEEEECC
Confidence 3456678888888 8999998643
No 254
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=51.36 E-value=41 Score=25.25 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 426 VKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 426 ~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
-+.++....+..+++ ++|.+++.+|.+..++.+. +|-+++.|.+-+
T Consensus 14 ~~~ee~~~f~~dL~T-~~E~~~l~~R~~va~~lL~-----~g~syreIa~~t 59 (87)
T PF01371_consen 14 KDEEECYDFFEDLCT-PDELEALAQRWQVAKELLD-----EGKSYREIAEET 59 (87)
T ss_dssp HCHHCHHHHHHHHSS-HHHHHHHHHHHHHHHHHHH-----TTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHh
Confidence 577888999999998 7888888888888886765 777777777543
No 255
>PRK09620 hypothetical protein; Provisional
Probab=50.56 E-value=25 Score=31.98 Aligned_cols=39 Identities=13% Similarity=-0.123 Sum_probs=28.5
Q ss_pred CCcEEEEecCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIP------------MFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P------------~l~La~~L~~rGH~V~~~~~~ 44 (489)
+.++|++...|+.=.+.| -..||++|.++|++|+++..+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456777776665544333 267999999999999999754
No 256
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=50.15 E-value=22 Score=30.85 Aligned_cols=42 Identities=19% Similarity=0.070 Sum_probs=31.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLK 51 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (489)
||++.-.++ +...-...|.+.|+++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 577776766 455567799999999999999998775544443
No 257
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=50.14 E-value=1.4e+02 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=23.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 58898876653 367778889999999866543
No 258
>COG1422 Predicted membrane protein [Function unknown]
Probab=50.06 E-value=45 Score=29.24 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=57.3
Q ss_pred hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHH
Q 042970 371 SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRK 450 (489)
Q Consensus 371 s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~ 450 (489)
++.++++-+.-.+..|+..=++.--..++ . .+--.-+...+++.+.|.++-+++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV----------~--------------avi~gl~~~i~~~~liD~ekm~~~qk 79 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV----------A--------------AVITGLYITILQKLLIDQEKMKELQK 79 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH----------H--------------HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66677777777777776554443322221 0 12334466778888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 042970 451 RAKEFEELAKRALEEGGSSYNNIQLFFQDIM 481 (489)
Q Consensus 451 ~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (489)
.++++++++++|-++|.- .+++++-+.-+
T Consensus 80 ~m~efq~e~~eA~~~~d~--~~lkkLq~~qm 108 (201)
T COG1422 80 MMKEFQKEFREAQESGDM--KKLKKLQEKQM 108 (201)
T ss_pred HHHHHHHHHHHHHHhCCH--HHHHHHHHHHH
Confidence 999999999999666544 66666654433
No 259
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=49.85 E-value=1.6e+02 Score=24.82 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=71.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHH---HHhcCCCeEEecccchHhhhcCC
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFE---ERIKGRGLLIRGWVPQVMILSHP 358 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~v~~~~pq~~ll~~~ 358 (489)
.|-|-+||.. |....+++...|+..+..+-+.+.+... .|+.+. +..+.. .+
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--------~p~~l~~~~~~~~~~---------------~~ 56 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--------TPERLLEFVKEYEAR---------------GA 56 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--------SHHHHHHHHHHTTTT---------------TE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHHHHHHHhccC---------------CC
Confidence 4667778766 5667778888888888777665554332 222221 111111 12
Q ss_pred CccccccccChh----hHHHHHHhCCcEeecCCcCcchhh----HHHHHHHhcceeEecccCCccccccccccccccHHH
Q 042970 359 AVGGFLTHCGWN----SSLEGISAGVQMLTWPLFGDQFCN----EKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDD 430 (489)
Q Consensus 359 ~~~~~I~HgG~~----s~~eal~~GvP~l~~P~~~DQ~~n----a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (489)
++ ||.=.|.. ++..++. -.|+|.+|....+... ...+..=.|+++..-.- +...++.-
T Consensus 57 ~v--iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~ 122 (150)
T PF00731_consen 57 DV--IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAAL 122 (150)
T ss_dssp SE--EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHH
T ss_pred EE--EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHH
Confidence 33 66655533 4444443 7999999998775432 22221123454332110 11356666
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 042970 431 VETAINILMDDGEERDVRRKRAKEFEELAKRA 462 (489)
Q Consensus 431 l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~ 462 (489)
++-.|-.+ .|+ .++++.+..++++++.
T Consensus 123 ~A~~ILa~-~d~----~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 123 LAARILAL-KDP----ELREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHT-T-H----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCH----HHHHHHHHHHHHHHcc
Confidence 66655544 456 8888888888877643
No 260
>PRK14098 glycogen synthase; Provisional
Probab=49.44 E-value=27 Score=35.94 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.2
Q ss_pred cEEEEecC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPF--------LAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~--------p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
||||+++. |+.|++ .-.|.++|+++||+|.++.|-
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCC
Confidence 89999874 334444 567889999999999999764
No 261
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.05 E-value=13 Score=31.40 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=26.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
||.++-.|..|+ ++|..|..+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777777665 79999999999999998764
No 262
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=48.95 E-value=69 Score=27.34 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
.+.+ +++|+|-| ++.+|...++|+|++.
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3444 88888744 6779999999999995
No 263
>PRK09165 replicative DNA helicase; Provisional
Probab=48.81 E-value=1.4e+02 Score=30.87 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhHHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANH---------------RAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~r---------------GH~V~~~~~~~~~~~~~~~ 53 (489)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 5667788999999999999888753 7899999888776655443
No 264
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=48.78 E-value=2.3e+02 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
..++.++.. .+||++|.++. +..+|+++|||++.+
T Consensus 427 ~~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 427 WHLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 366777777 79999998853 578899999999874
No 265
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=48.51 E-value=2.3e+02 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=33.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNA 47 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~ 47 (489)
.-+++.-.|+.|-..=.++++...+.+|..|.|++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 4466667789999999999999988899999999987543
No 266
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=48.47 E-value=2.6e+02 Score=26.89 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHH
Q 042970 21 LIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNS 100 (489)
Q Consensus 21 v~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (489)
..-+.+|++.|.++|.+|.+.+++...+......+.. + -.... +..
T Consensus 193 ~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~---~--~~~~~---------l~g-------------------- 238 (334)
T TIGR02195 193 HEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL---P--GELRN---------LAG-------------------- 238 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC---C--ccccc---------CCC--------------------
Confidence 3368899999998899998888775554433331110 0 00000 000
Q ss_pred HhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 101 HSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 101 ~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
.....++..++ .+.|++|+.- .+...+|..+|+|.+.++.
T Consensus 239 -~~sL~el~ali----~~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 -ETSLDEAVDLI----ALAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -CCCHHHHHHHH----HhCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 01123455555 3688998432 4678899999999999755
No 267
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=48.34 E-value=1.7e+02 Score=29.43 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 108 FENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 108 l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
+.+.+++ .+||+||..+.. ..+|+++|||++.+
T Consensus 350 ~~~~~~~--~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEM--LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHh--cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 3344556 699999987544 36899999999885
No 268
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.31 E-value=1.5e+02 Score=28.51 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=37.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAAR 49 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (489)
+--|+|+-.-+.|-..-.=.||..|.+.|+.|.+++....++-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 4567777788999999999999999999999999988766553
No 269
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=48.04 E-value=24 Score=30.76 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=30.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLK 51 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (489)
||++.-.|+-|-+.- ..|.+.|+++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555665555544 899999999999999998886665543
No 270
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=47.92 E-value=24 Score=32.09 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=25.6
Q ss_pred cEEEEecCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPM------------FDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~------------l~La~~L~~rGH~V~~~~~~ 44 (489)
||||+...|+.=.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 35565555555444432 57889999999999998643
No 271
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.69 E-value=2.3e+02 Score=26.57 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=33.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
+..|+|+..++.|-..-...||..|+++|+.|.++....+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3456666677999999999999999999999999976643
No 272
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=47.11 E-value=1.6e+02 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred chHHHHHHHhhcCCCCcEEEE
Q 042970 104 LQLPFENLFSEQSPKPCCIIS 124 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~ 124 (489)
....+.+++++ .+||+||+
T Consensus 109 ~~~~L~~iIr~--~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIRE--FRPHVITT 127 (283)
T ss_pred HHHHHHHHHHH--cCCEEEEe
Confidence 45678888888 89999985
No 273
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=46.90 E-value=1.4e+02 Score=26.10 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.3
Q ss_pred CccCHHHHH-HHHHHHHhCCCeEEEEeCCcch
Q 042970 17 AQGHLIPMF-DMARLLANHRAIVTIVTTPVNA 47 (489)
Q Consensus 17 ~~GHv~P~l-~La~~L~~rGH~V~~~~~~~~~ 47 (489)
.+|=+--++ .|+..|+++||+|++.+.....
T Consensus 15 ~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 15 RYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred ccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 355555444 5888889999999999776444
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.90 E-value=1.8e+02 Score=29.28 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=34.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLA-NHRAIVTIVTTPVNAAR 49 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~-~rGH~V~~~~~~~~~~~ 49 (489)
.-|+++..++.|-..-...||..|. ++|..|.+++.......
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 4566666779999999999999997 57999999987755443
No 275
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=46.85 E-value=1.5e+02 Score=26.19 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=31.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNA 47 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~ 47 (489)
-|+|+-..+.|-..-...||..++.+|..|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 456666779999999999999999999999999876553
No 276
>PRK01381 Trp operon repressor; Provisional
Probab=46.76 E-value=58 Score=25.07 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 042970 425 LVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQ 478 (489)
Q Consensus 425 ~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (489)
..+.+.+...+..+++ ++|.+++..|.+-+...++ |+-|.+.|.+-++
T Consensus 19 a~~~~~~~~~l~~llT-p~Er~al~~R~~I~~~L~~-----g~~sQREIa~~lG 66 (99)
T PRK01381 19 AFEEDLHLPLLTLLLT-PDEREALGTRVRIVEELLR-----GELSQREIKQELG 66 (99)
T ss_pred hccHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHc-----CCcCHHHHHHHhC
Confidence 4788999999999998 7888888888888887765 7778888776543
No 277
>PRK08760 replicative DNA helicase; Provisional
Probab=46.75 E-value=1.1e+02 Score=31.47 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=35.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLAN-HRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~-rGH~V~~~~~~~~~~~~~~~ 53 (489)
=+++..-|+.|-..-.+.+|...+. .|+.|.|++.+.....+...
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~R 276 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMR 276 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHH
Confidence 3566778899999999999998875 49999999887766544433
No 278
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.71 E-value=97 Score=31.26 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=35.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLAN-HRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~-rGH~V~~~~~~~~~~~~~~~ 53 (489)
=+++...|+.|-..-.+.+|..++. .|+.|.|++.+.....+...
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHH
Confidence 3566678899999999999999875 59999999988776655433
No 279
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=46.42 E-value=3.1e+02 Score=27.20 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=59.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCcc
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVG 361 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~ 361 (489)
-|.-+.||+. .++++.+...+..+++.++++. |-.|...-.+ ..-| |-.+-
T Consensus 196 ~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGG---------LiaGIat~vk-------~~~p------~vkII 246 (457)
T KOG1250|consen 196 DIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGG---------LIAGIATGVK-------RVGP------HVKII 246 (457)
T ss_pred hhhcCcchHH-------HHHHHhhcCCCCeEEEecCCch---------hHHHHHHHHH-------HhCC------CCceE
Confidence 3555555543 4666666666556677777665 3333321110 1111 22222
Q ss_pred ccccccChhhHHHHHHhCCcEee--cCCcCcc------hhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHH
Q 042970 362 GFLTHCGWNSSLEGISAGVQMLT--WPLFGDQ------FCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVET 433 (489)
Q Consensus 362 ~~I~HgG~~s~~eal~~GvP~l~--~P~~~DQ------~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (489)
++-|+ |..++..|+.+|.|+-. ++-++|- ..|+.+++... .+.. ..++.+++..
T Consensus 247 GVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~-----~d~v------------vvV~~~ei~a 308 (457)
T KOG1250|consen 247 GVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKL-----VDRV------------VVVEDDEIAA 308 (457)
T ss_pred EEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhc-----CceE------------EEeccHHHHH
Confidence 34444 46788889999988632 1122231 22444443111 2222 1578899999
Q ss_pred HHHHhccCC
Q 042970 434 AINILMDDG 442 (489)
Q Consensus 434 ai~~il~~~ 442 (489)
+|.++++|.
T Consensus 309 aI~~l~ede 317 (457)
T KOG1250|consen 309 AILRLFEDE 317 (457)
T ss_pred HHHHHHHhh
Confidence 999998764
No 280
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=46.31 E-value=80 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=22.5
Q ss_pred CCCccccccccChhhHHHHHHh----CCcEeec
Q 042970 357 HPAVGGFLTHCGWNSSLEGISA----GVQMLTW 385 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~ 385 (489)
.+++ +|+-||=||++++++. ++|++.+
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGI 93 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGI 93 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE
Confidence 4566 9999999999999874 6788877
No 281
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=46.04 E-value=1.8e+02 Score=25.87 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=74.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCC
Q 042970 280 SSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPA 359 (489)
Q Consensus 280 ~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~ 359 (489)
++++.|+.|.... .-+..|.+.+.++.+...... +.+..-....++.+..--.+...+..++
T Consensus 10 k~vlVvGgG~va~-------rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGGGDVAL-------RKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECcCHHHH-------HHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhCCcE
Confidence 4588887776542 233455566777665543221 1111111233555433222344566666
Q ss_pred ccccccccChhhHH-----HHHHhCCcEeec--CCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH
Q 042970 360 VGGFLTHCGWNSSL-----EGISAGVQMLTW--PLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE 432 (489)
Q Consensus 360 ~~~~I~HgG~~s~~-----eal~~GvP~l~~--P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (489)
+ +|..-|-..+. +|-..|+|+-++ |-..| +..-..+ ++-++-+.+.+. ++++.+ +..|+
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~---------G~sP~l-a~~lr 137 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG---------GAAPVL-ARLLR 137 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC---------CCCcHH-HHHHH
Confidence 6 88877766443 344568888433 33333 2222233 232233333222 122233 45688
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 042970 433 TAINILMDDGEERDVRRKRAKEFEELAKRA 462 (489)
Q Consensus 433 ~ai~~il~~~~~~~~~~~~a~~l~~~~~~~ 462 (489)
+.|.+++. +....+.+...+++..+++.
T Consensus 138 ~~ie~~l~--~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 138 ERIETLLP--PSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHhcc--hhHHHHHHHHHHHHHHHHhh
Confidence 88888884 23345666666677666654
No 282
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=46.00 E-value=36 Score=32.80 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=29.8
Q ss_pred hchHHHHHHHhhcCCCCcEEEECCCCcch----------HHHHHHcCCCcEE
Q 042970 103 MLQLPFENLFSEQSPKPCCIISDMGYPWT----------VDTAAKFNVPRIV 144 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI~D~~~~~~----------~~~A~~lgIP~v~ 144 (489)
.....+.++++. .+||++|+.+.+.++ ..+.+++|||.++
T Consensus 67 ea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 67 EALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 345566777777 899999999966432 2256789999998
No 283
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.86 E-value=28 Score=35.38 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=35.2
Q ss_pred CCCcEEEEecCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 042970 5 ASEFHILLLPFLAQGHLIPM------------FDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~------------l~La~~L~~rGH~V~~~~~~~ 45 (489)
.+.+|||+...|++=.+.|. ..||+++..||++|++++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 35679999999998888875 689999999999999998773
No 284
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=45.51 E-value=35 Score=32.63 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChh
Q 042970 291 CNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWN 370 (489)
Q Consensus 291 ~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~ 370 (489)
...+.+...++.+++.+.+.+.||.+.++.... .+.++++...+-.+|.. ||=.+-..
T Consensus 48 ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~--------------------rlL~~lD~~~i~~~PK~--fiGySDiT 105 (308)
T cd07062 48 SASPEERAEELMAAFADPSIKAIIPTIGGDDSN--------------------ELLPYLDYELIKKNPKI--FIGYSDIT 105 (308)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh--------------------hhhhhcCHHHHhhCCCE--EEeccHHH
Confidence 344566788899999999999999988765332 23344555555556666 66666666
Q ss_pred hHHHHHH--hCCcEeecCCcC
Q 042970 371 SSLEGIS--AGVQMLTWPLFG 389 (489)
Q Consensus 371 s~~eal~--~GvP~l~~P~~~ 389 (489)
+++-+++ .|.+.+.-|...
T Consensus 106 aL~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 106 ALHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHHHHHHhcCCeEEECcccc
Confidence 6666663 366666666543
No 285
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=45.47 E-value=26 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 042970 18 QGHLIPMFDMARLLANHRAIVTIVTTPVNAARLK 51 (489)
Q Consensus 18 ~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (489)
.-.+.-.+=|+..|+++||+|++++++.....++
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 3344556778999999999999999985554443
No 286
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=45.41 E-value=94 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 21 LIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 21 v~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
=.-++.+|+.|.+.|.++. ++......+++.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~ 40 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA 40 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc
Confidence 3457899999999999984 455566666555
No 287
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.33 E-value=2.2e+02 Score=28.76 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=34.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNA 47 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~ 47 (489)
.-|+|+-.++.|-..-...||..|+.+|+.|.+++...+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4566777779999999999999999999999999876554
No 288
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=45.25 E-value=1.9e+02 Score=24.56 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=31.5
Q ss_pred chHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcCCCcEEEec
Q 042970 104 LQLPFENLFSEQSPKPCCIISDMGYP---WTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~l~~ 147 (489)
....+.+++++ .+||+|+...-.. .+..+|.+||.|+++-.+
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 34466677777 7899999766432 688899999999998443
No 289
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=44.82 E-value=2e+02 Score=25.24 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred cE-EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC---CcchhhHHHHHHHhhhCCCceEEEEee
Q 042970 8 FH-ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT---PVNAARLKTVLARAVQSGLQIRLVEIQ 70 (489)
Q Consensus 8 ~~-vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (489)
.| |+|+..+..-|---+..+++.|++.|-.|.+++- ..+.+.++...+.... +.+-.|+.+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~-~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG-KDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC-CCCceEEEeC
Confidence 45 7888888888877788999999999999988753 4455666666555422 2246677765
No 290
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=44.77 E-value=21 Score=31.04 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=22.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|||.++. +.|++- -.+.++...|||+||.++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 4565554 334332 35789999999999998744
No 291
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.77 E-value=1.7e+02 Score=28.36 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CcEEEEecCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCC
Q 042970 7 EFHILLLPFLAQG-----HLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQG 81 (489)
Q Consensus 7 ~~~vl~~~~p~~G-----Hv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (489)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+..++..... . ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~-------~--------------~~ 233 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGL-------P--------------NA 233 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhc-------C--------------Cc
Confidence 3566666662331 34578899999999999999888774444433332111 0 00
Q ss_pred CCCCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 82 CENFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
.. ... .....++..++ .+.|++|+. ..+...+|..+|.|.|.+..
T Consensus 234 ~~-l~~--------------k~sL~e~~~li----~~a~l~I~~--DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 234 VI-LAG--------------KTSLEELAALI----AGADLVIGN--DSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred cc-cCC--------------CCCHHHHHHHH----hcCCEEEcc--CChHHHHHHHcCCCEEEEEC
Confidence 00 000 01123444454 367888843 24678899999999999764
No 292
>PRK06988 putative formyltransferase; Provisional
Probab=44.67 E-value=2.3e+02 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=23.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 7899996664 3456677888899998877654
No 293
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=44.16 E-value=30 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=28.7
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 13 LPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 13 ~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
++.|+.|-.--.+.||++|++||..|.+++-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 46789999999999999999999999999744
No 294
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.06 E-value=29 Score=33.28 Aligned_cols=34 Identities=18% Similarity=-0.023 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
.+|||+++-.|+.| ..+|..|++.||+|+++...
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 45799999888877 45788899999999999765
No 295
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=43.71 E-value=2.5e+02 Score=25.38 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=36.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~~~~~~~~~~~~ 53 (489)
-+++...|+.|=..-.++++..++.+ |+.|.|++.+.....+...
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 35556677999999999999999888 9999999988766654443
No 296
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.47 E-value=3.2e+02 Score=26.60 Aligned_cols=129 Identities=13% Similarity=-0.036 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
..++.|++++..|--||--.|--=|..|+..|.+|.+++.-..... .+.. ..++++++.++.+..-...+
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~-----~hprI~ih~m~~l~~~~~~p---- 78 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL-----NHPRIRIHGMPNLPFLQGGP---- 78 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh-----cCCceEEEeCCCCcccCCCc----
Confidence 3568899999999999999999999999999999999976544322 1111 23689999987432111111
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEEC-CCCcchHHHH----HHcCCCcEEEecchHHH
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISD-MGYPWTVDTA----AKFNVPRIVFHGFSCFC 152 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D-~~~~~~~~~A----~~lgIP~v~l~~~~~~~ 152 (489)
............+...+..+... .++|.|+.- +-+.....++ ...|..+++=|....++
T Consensus 79 --------~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 --------RVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred --------hhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 12222333333334444444444 788988744 3333333333 33466777655555544
No 297
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.45 E-value=2e+02 Score=26.19 Aligned_cols=48 Identities=10% Similarity=-0.083 Sum_probs=38.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
..-+++.-.|+.|-..=.++++.+-.++|..|.|++.+...+.+.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHH
Confidence 345777778899999999998887768899999999887776655543
No 298
>PLN02470 acetolactate synthase
Probab=43.25 E-value=76 Score=33.53 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=51.0
Q ss_pred EeCCcccCCH--HHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEec--------ccchHhhh
Q 042970 286 CLGSICNLTS--SQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRG--------WVPQVMIL 355 (489)
Q Consensus 286 s~GS~~~~~~--~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--------~~pq~~ll 355 (489)
+|||....+. ..-..+++.|++.|++.|+.+.+..... +-+.+. ..+++.++. ++-+..-.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 4666555332 2245577888888888888776654221 111111 122332211 11111111
Q ss_pred cCCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 356 SHPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
.....+++++|.|-| ++.+|...++|+|++.
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 222344488998854 7789999999999995
No 299
>PRK07773 replicative DNA helicase; Validated
Probab=42.77 E-value=1.7e+02 Score=32.87 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=35.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~~~~~~~~~~~~ 53 (489)
|++..-|+.|-..-.+++|...+.+ |..|.|++-+.....+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 6677788999999999999998755 8899999888776655444
No 300
>PRK10490 sensor protein KdpD; Provisional
Probab=42.72 E-value=1.1e+02 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.6
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
++||-+=..|+-|-.+-||.-|++|+++|++|.+...+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 5799999999999999999999999999999998755533
No 301
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=42.59 E-value=83 Score=24.01 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 042970 425 LVKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQ 478 (489)
Q Consensus 425 ~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (489)
..+++.+...+..+++ ++|.+.+..|.+-+.+.+. ||-+.+.|++.++
T Consensus 19 ~~~~~~l~~~l~~lLT-p~E~~~l~~R~~i~~~Ll~-----~~~tQrEIa~~lG 66 (94)
T TIGR01321 19 ADSEDDMQLLLELILT-RSEREDLGDRIRIVNELLN-----GNMSQREIASKLG 66 (94)
T ss_pred cCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHh-----CCCCHHHHHHHhC
Confidence 4688999999999998 7888888888887777655 7777887776654
No 302
>PRK07206 hypothetical protein; Provisional
Probab=42.24 E-value=1e+02 Score=30.86 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=23.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
++|+++-.... -..++++++++|+++.++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 46777765433 346899999999999888755
No 303
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.15 E-value=1.8e+02 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEecCCCccCHHHHHHHHHHHHhC
Q 042970 11 LLLPFLAQGHLIPMFDMARLLANH 34 (489)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~r 34 (489)
.++-.|+.||..=|++|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344567779999999999999776
No 304
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.67 E-value=1.6e+02 Score=29.11 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=35.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC-cchhhHHHHHHHhhhCCCceEEEEee
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHR-AIVTIVTTP-VNAARLKTVLARAVQSGLQIRLVEIQ 70 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG-H~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (489)
+++|+++-.|..|+ .+|.-|+++| ++|+++.-. ...+++... .+..+++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~------~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL------IGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh------ccccceeEEec
Confidence 46788888876665 5789999999 999999644 333333333 22356776654
No 305
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.59 E-value=2.4e+02 Score=28.18 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=35.4
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNA 47 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~ 47 (489)
+..|+|+-.++.|-..-+..||..|..+|+.|.+++.....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45778888889999999999999999999999999876543
No 306
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.36 E-value=1e+02 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
+..|+++-.=+.|-..-.-.||+.|..+|+.|.+++...++...-++.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH
Confidence 455667777799999999999999999999999998776655433333
No 307
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=41.29 E-value=3e+02 Score=30.97 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
..+.+++++ .+||++|.... ...+|+++|||++-..
T Consensus 379 ~el~~~i~~--~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 379 AGLLRVMRE--KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHh--cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 356677777 89999998643 4668999999999654
No 308
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.16 E-value=2.5e+02 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.9
Q ss_pred CCCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecch
Q 042970 116 SPKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFS 149 (489)
Q Consensus 116 ~~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~ 149 (489)
...||+|| .|+..- .+..-|.++|||.|.+.-+.
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 36899987 666443 67788999999999975443
No 309
>PRK05636 replicative DNA helicase; Provisional
Probab=41.10 E-value=1.3e+02 Score=31.02 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=33.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHH
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLA-NHRAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~-~rGH~V~~~~~~~~~~~~~~ 52 (489)
|++..-|+.|-..-.+.+|...+ +.|..|.|++.+-....+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 56677889999999999998876 45889999988766554433
No 310
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=40.56 E-value=61 Score=33.06 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=42.2
Q ss_pred hHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHH
Q 042970 371 SSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRK 450 (489)
Q Consensus 371 s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~ 450 (489)
++.||+++|.|++..= +..=+-.| +..--|...+.. .-....+++++.++.+|++.+..+.+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6889999999999872 33333334 244445555443 33444799999999999955544444
Q ss_pred HHH
Q 042970 451 RAK 453 (489)
Q Consensus 451 ~a~ 453 (489)
+-.
T Consensus 443 ~G~ 445 (495)
T KOG0853|consen 443 NGL 445 (495)
T ss_pred HHH
Confidence 433
No 311
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=39.80 E-value=2.8e+02 Score=24.81 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=37.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
.-+++...|+.|-..-.+.++..-.++|+.|.+++.+...+.+.+...
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~ 64 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAK 64 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Confidence 345666677999999889999888888999999999877766655543
No 312
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.28 E-value=39 Score=31.54 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.3
Q ss_pred CCCccccccccChhhHHHHHH------hCCcEeecC
Q 042970 357 HPAVGGFLTHCGWNSSLEGIS------AGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~------~GvP~l~~P 386 (489)
.+++ +|+-||=||++.|++ .++|++.+-
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 3556 999999999999986 488988883
No 313
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.24 E-value=47 Score=28.74 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=30.3
Q ss_pred EEEEecCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCCcchhhHH
Q 042970 9 HILLLPFLAQGHLIP-MFDMARLLAN-HRAIVTIVTTPVNAARLK 51 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P-~l~La~~L~~-rGH~V~~~~~~~~~~~~~ 51 (489)
||++.-.++ ||... .+.+.+.|.+ +||+|.++.++.....++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 345555554 78766 8999999985 599999998876655444
No 314
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=39.09 E-value=46 Score=33.01 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+.+||++...|+. ...-.+.|.+.|.+.|++|.++.++.....+...
T Consensus 2 ~~k~IllgiTGSi-aa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 2 ENKKILLGVTGGI-AAYKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 4568888888764 4466899999999999999999888665555443
No 315
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.09 E-value=3.4e+02 Score=25.60 Aligned_cols=50 Identities=22% Similarity=0.056 Sum_probs=34.3
Q ss_pred CeEEecccchH---hhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHH
Q 042970 342 GLLIRGWVPQV---MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEK 396 (489)
Q Consensus 342 ~~~v~~~~pq~---~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 396 (489)
.+.+..|+||+ .+|-.|++-+ - -|=-|...|..+|+|.+=- .+-|-.|+.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~--V-RGEDSFVRAq~agkPflWH--IYpQdentH 291 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNL--V-RGEDSFVRAQLAGKPFLWH--IYPQDENTH 291 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccce--e-ecchHHHHHHHcCCCcEEE--ecCCccccH
Confidence 45677899985 4888888733 2 3567999999999998732 233444443
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.05 E-value=41 Score=29.95 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=29.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|++..+|+.|-..-.-.||++|.+++|+|.-.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 5666688999999999999999999999987653
No 317
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.88 E-value=2.2e+02 Score=27.70 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEE
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRA-IVTIV 41 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH-~V~~~ 41 (489)
+..||+++-.++.| -.+|+.|+..|+ +++++
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lv 54 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIA 54 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEE
Confidence 45789999998877 678999999998 66766
No 318
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.77 E-value=1.1e+02 Score=32.22 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=49.3
Q ss_pred EeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEec--------ccc--hHhh
Q 042970 286 CLGSICNLTS-SQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRG--------WVP--QVMI 354 (489)
Q Consensus 286 s~GS~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--------~~p--q~~l 354 (489)
|.||...... ..-..+++.|++.|++.|..+.+..... +-+.+. ..+++.+.. +.- +..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~------l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~ 73 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILP------LYDALS---QSTQIRHILARHEQGAGFIAQGMART 73 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 4455554333 3345577888888888887765543211 111111 122332211 111 1112
Q ss_pred hcCCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 355 LSHPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 355 l~~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
-..+.+ +++|.|-| ++.+|...++|+|++.
T Consensus 74 tg~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 74 TGKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred cCCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 233444 88887744 7889999999999995
No 319
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.71 E-value=2.3e+02 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.3
Q ss_pred cccccCh------hhHHHHHHhCCcEeecCC
Q 042970 363 FLTHCGW------NSSLEGISAGVQMLTWPL 387 (489)
Q Consensus 363 ~I~HgG~------~s~~eal~~GvP~l~~P~ 387 (489)
+++|+|- +.+.+|...++|+|++.-
T Consensus 63 ~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 63 VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 8888663 477799999999999963
No 320
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=38.66 E-value=85 Score=32.26 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~ 44 (489)
||||++..+++.| +|++.|++. |++|.++-.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 5899999998887 578888876 9999888543
No 321
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.32 E-value=99 Score=27.77 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=54.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhh-------hCCCceEEEEeeCCcccCCCCCCCCCCCCCC
Q 042970 17 AQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAV-------QSGLQIRLVEIQFPWQEAGLPQGCENFDMLP 89 (489)
Q Consensus 17 ~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (489)
+.|-..=+.+++.-+...||.|++++++.....+-+..+..- ..| .+.|.++.. +..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~--------~~~------- 101 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNL--------EPV------- 101 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecc--------ccc-------
Confidence 778888889999999999999999999876655444433221 001 233333211 000
Q ss_pred chhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCcc
Q 042970 90 SIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYPW 130 (489)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~~ 130 (489)
. .-.+..+...+.+.+.++. ++-|+||.|+++..
T Consensus 102 --~---~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~~ 135 (235)
T COG2874 102 --N---WGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSAF 135 (235)
T ss_pred --c---cChHHHHHHHHHHHhhHHh--hcCCEEEEecccHH
Confidence 0 0011222344455555666 89999999998753
No 322
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.02 E-value=61 Score=28.63 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.9
Q ss_pred CcEEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 7 EFHILLLPF--LAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 7 ~~~vl~~~~--p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
.+|++.++. ++.|-..=...||..|+++|++|.++=
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 356555554 477888899999999999999999883
No 323
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=37.68 E-value=51 Score=30.10 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=31.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKT 52 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~ 52 (489)
||++--.|+.+=+.=.+.|.+.|.++ ||+|.++.++.....+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 35555555433347899999999999 999999988755554443
No 324
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=37.36 E-value=1.6e+02 Score=26.66 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=56.9
Q ss_pred chhhhhhccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCE-EEEEecCCchhhhhhhhchhhHHHHhcCCCeEE
Q 042970 267 VPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPF-IWVTRVGNKLEELEKWLVEENFEERIKGRGLLI 345 (489)
Q Consensus 267 ~~~~~~~l~~~~~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 345 (489)
-++....|..+.+| ||..|-+..+|+.+.++.+.+ |.+. ++++...- .+.+ ..++.
T Consensus 86 ~eD~~~ll~aGADK----VSINsaAv~~p~lI~~~a~~F---GsQciVvaIDakr---------~~~g-----~~~~~-- 142 (256)
T COG0107 86 VEDARKLLRAGADK----VSINSAAVKDPELITEAADRF---GSQCIVVAIDAKR---------VPDG-----ENGWY-- 142 (256)
T ss_pred HHHHHHHHHcCCCe----eeeChhHhcChHHHHHHHHHh---CCceEEEEEEeee---------ccCC-----CCCcE--
Confidence 35677778777777 788888888898888887766 4443 34443211 0100 00011
Q ss_pred ecccchHhhhcCCCccccccccChhhHHHHHHhCCcEeecCCcCcchhhHHHHHHHhcceeEeccc
Q 042970 346 RGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVE 411 (489)
Q Consensus 346 ~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~ 411 (489)
- +-+|||-- +...|--.||+.+ |++|+|..+-.+
T Consensus 143 --------------~--v~~~gGr~---------------~t~~d~~~Wa~~~-e~~GAGEIlLts 176 (256)
T COG0107 143 --------------E--VFTHGGRE---------------DTGLDAVEWAKEV-EELGAGEILLTS 176 (256)
T ss_pred --------------E--EEecCCCc---------------CCCcCHHHHHHHH-HHcCCceEEEee
Confidence 1 67788852 2456778999999 699999776433
No 325
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=37.30 E-value=49 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
+..+|.++-++++||. -|.-|++.|++|++...+..
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 3578999999999985 47789999999999876544
No 326
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.28 E-value=54 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=25.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|||+++-.|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 478888877766 4678899999999999976
No 327
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=37.19 E-value=2e+02 Score=27.97 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHHh
Q 042970 23 PMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSHS 102 (489)
Q Consensus 23 P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (489)
-+.+|++.|.++|++|.+...+...+...+..... +.......+. +.. .
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~---~~~~~~~~~~-------l~g---------------------~ 249 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL---NTEQQAWCRN-------LAG---------------------E 249 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc---ccccccceee-------ccC---------------------C
Confidence 57899999988899998887775554433321110 0000000000 000 0
Q ss_pred hchHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 103 MLQLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
....++..++ .+.|++|+.- .+...+|..+|+|.+.++.
T Consensus 250 ~sL~el~ali----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 250 TQLEQAVILI----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred CCHHHHHHHH----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 1123444555 3678888442 4678899999999999765
No 328
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=36.90 E-value=47 Score=31.46 Aligned_cols=31 Identities=29% Similarity=0.162 Sum_probs=25.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|||+++-.|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 468888877766 5678889999999999975
No 329
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=35.87 E-value=2.9e+02 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
.+-++++..+.| + -.++|+.|++|||+|.+++-
T Consensus 6 ~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 6 GKTALITGASSG-I--GAELAKQLARRGYNLILVAR 38 (265)
T ss_pred CcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeC
Confidence 344555544433 2 36899999999999999863
No 330
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.79 E-value=38 Score=31.74 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=24.5
Q ss_pred HhhhcCCCccccccccChhhHHHHHHh----CCcEeec
Q 042970 352 VMILSHPAVGGFLTHCGWNSSLEGISA----GVQMLTW 385 (489)
Q Consensus 352 ~~ll~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~ 385 (489)
.++...+++ +|+=||=||++.+++. ++|++.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgI 72 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGI 72 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE
Confidence 444445677 9999999999988653 6788887
No 331
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.77 E-value=2.7e+02 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=16.2
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHH
Q 042970 426 VKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRAL 463 (489)
Q Consensus 426 ~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~ 463 (489)
.++.-++..|-. +.|+ .++++.+..++..++.+
T Consensus 116 ~nAa~~AaqIl~-~~d~----~l~~kl~~~r~~~~~~v 148 (156)
T TIGR01162 116 GNAALLAAQILG-IKDP----ELAEKLKEYRENQKEEV 148 (156)
T ss_pred hHHHHHHHHHHc-CCCH----HHHHHHHHHHHHHHHHH
Confidence 444444444432 2344 56666666655555443
No 332
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=35.75 E-value=2.4e+02 Score=28.44 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCccccccccChh------hHHHHHHhCCcEeec
Q 042970 358 PAVGGFLTHCGWN------SSLEGISAGVQMLTW 385 (489)
Q Consensus 358 ~~~~~~I~HgG~~------s~~eal~~GvP~l~~ 385 (489)
+.+ +++|.|-| .+.+|...++|+|++
T Consensus 64 ~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 444 88888844 777999999999999
No 333
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=35.71 E-value=3.8e+02 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+.||+++..-=-=.+.-+=.....|+++||+|+++
T Consensus 369 ~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv 403 (652)
T PRK02122 369 PKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVA 403 (652)
T ss_pred CceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEE
Confidence 45666665433345677777778999999999986
No 334
>PRK13604 luxD acyl transferase; Provisional
Probab=35.69 E-value=82 Score=30.08 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
++..+++++.+..++-.-+..+|+.|.++|..|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345677788888788777999999999999999876
No 335
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=35.68 E-value=1.6e+02 Score=25.96 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=30.8
Q ss_pred EEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 9 HILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 9 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
++-|++.| ..|-..-+|..++....+|-.|.++.+.-
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45555555 77999999999999999999999998763
No 336
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=35.55 E-value=3.7e+02 Score=24.97 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCCcEEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhh---h--CCC-ceEEEEeeCCcccCC
Q 042970 5 ASEFHILLLP-FLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAV---Q--SGL-QIRLVEIQFPWQEAG 77 (489)
Q Consensus 5 ~~~~~vl~~~-~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~i~~~~~~~~ 77 (489)
+++.|-.|+- =++-|-..=.-.||-.|+.-+|.|.++++.+.+..--+..+..- . .|+ ++-..+|.....-..
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~ 95 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGD 95 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhhh
Confidence 3456777776 45889999999999999999999999988765543222222111 0 111 233334432110011
Q ss_pred CCCCCCCCC---CCCchhhHHHHHHHHh-----hchHHHHHHHhhcCCCCcEEEECCC
Q 042970 78 LPQGCENFD---MLPSIDLASKFFNSHS-----MLQLPFENLFSEQSPKPCCIISDMG 127 (489)
Q Consensus 78 ~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~l~~ll~~~~~~~D~VI~D~~ 127 (489)
+++...... ......++..+..... ....++.+++++ -++|+||.|..
T Consensus 96 ~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~--~~F~~vVFDTA 151 (323)
T KOG2825|consen 96 MPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKG--MNFDVVVFDTA 151 (323)
T ss_pred hHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhc--cccceEEeccC
Confidence 222111110 0111133333333332 345677788888 78999999954
No 337
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.54 E-value=83 Score=28.51 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 20 HLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 20 Hv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|+..|-..|.+|+++||+|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678899999999999999999765
No 338
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.40 E-value=60 Score=28.09 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCcc--hHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYPW--TVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~~--~~~~A~~lgIP~v~l~ 146 (489)
...++++++- +||+||....... ...--++.|||++.+.
T Consensus 59 ~~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 59 SLNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3566666664 9999998654332 3445678999998864
No 339
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=35.22 E-value=2.2e+02 Score=30.15 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=22.2
Q ss_pred CCCccccccccC------hhhHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCG------WNSSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 386 (489)
.+.+ +++|.| .+++.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444 888877 447889999999999994
No 340
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=35.14 E-value=3.5e+02 Score=26.82 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
.++.+++++ .+||++|.+.. ....|+++++|++..
T Consensus 331 ~~~~~~l~~--~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 331 EEIEELLEE--LKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHHH--HT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred HHHHHHHHh--cCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 467777777 79999998844 677899998888874
No 341
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.93 E-value=3.2e+02 Score=24.04 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=36.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc-chhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPV-NAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~-~~~~~~~~ 53 (489)
-+.+.-.|+.|=..=.+.++..+...|..|.|+.++. ..+++...
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~ 59 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQI 59 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHH
Confidence 3556667799999999999999999999999999875 44455444
No 342
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=34.59 E-value=98 Score=25.71 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEec
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRV 318 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 318 (489)
...+|++++||......+.++++++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4468999999998888888999888874 46777776543
No 343
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.59 E-value=67 Score=30.38 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEee
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQ 70 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (489)
+..+|+++-++++||.+ |.-|++.|.+|++..-+.... +..+.+ .||+..++.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s-~~kA~~------dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSS-WKKAKE------DGFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchh-HHHHHh------cCCEeecHH
Confidence 45799999999999976 567999999999987654443 333322 267776653
No 344
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.52 E-value=4.1e+02 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=33.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
+.-|+|+..++.|-..=+..||..|+.+|+.|.++.....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3456677777999999999999999999999999976543
No 345
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.51 E-value=66 Score=31.92 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred hchHHHHHHHhhcCCCCcEEEECCCCcch----------HHHHHHcCCCcEEE
Q 042970 103 MLQLPFENLFSEQSPKPCCIISDMGYPWT----------VDTAAKFNVPRIVF 145 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI~D~~~~~~----------~~~A~~lgIP~v~l 145 (489)
.....+.++++. .+||++|+.+.+.++ ..+.+++|||.++-
T Consensus 63 ea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 63 EAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 344566677777 899999999965422 22466799999983
No 346
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.41 E-value=66 Score=31.92 Aligned_cols=42 Identities=5% Similarity=0.065 Sum_probs=30.1
Q ss_pred hhchHHHHHHHhhcCCCCcEEEECCCCcch----------HHHHHHcCCCcEEE
Q 042970 102 SMLQLPFENLFSEQSPKPCCIISDMGYPWT----------VDTAAKFNVPRIVF 145 (489)
Q Consensus 102 ~~~~~~l~~ll~~~~~~~D~VI~D~~~~~~----------~~~A~~lgIP~v~l 145 (489)
+.....+.++++. .+||++|+.+.+.++ ..+.+++|||.++-
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 62 EEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3444566677777 899999999965422 22466799999983
No 347
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.36 E-value=69 Score=32.68 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+..||++...++-+ ..=...|.+.|+++||+|.++.++.....+...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 35788888777644 458899999999999999999888766666554
No 348
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.14 E-value=2.1e+02 Score=25.55 Aligned_cols=39 Identities=26% Similarity=-0.000 Sum_probs=25.0
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|.++ +.++|+++ ++.|++ -..|++.|.++||+|+.++..
T Consensus 1 ~~~~-~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 1 MGSL-MGRVALVT--GAARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCC-CCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 5443 34566653 344554 367889999999998775443
No 349
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.12 E-value=54 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=29.0
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|++. |||.|+-.|..| ..+|..|.++||+|+++...
T Consensus 1 ~~~~---m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHHG---MRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCC---CeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5554 479999888877 46889999999999998663
No 350
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.10 E-value=50 Score=33.25 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
..++.+++++ .+||++|..+. ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3466777777 89999998875 5678999999998753
No 351
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.05 E-value=2.2e+02 Score=25.73 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh-HHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHH
Q 042970 17 AQGHLIPMFDMARLLANHRAIVTIVTTPVNAAR-LKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLAS 95 (489)
Q Consensus 17 ~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (489)
+..|+.-.+.+...++.||=.+.|+++...... ++...... .+..+.-..++ |+--. .... ..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~--~gy~~~~~w~~------G~lTN---~~~l-----~g 153 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA--GGYSHNRKWLG------GLLTN---AREL-----FG 153 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh--cCceeeeeecc------ceeec---chhh-----cc
Confidence 567888889999999999999999987655443 33332211 11112222221 11111 1000 00
Q ss_pred HHHHHHhhchHHHHHHHhhcCCCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecchH
Q 042970 96 KFFNSHSMLQLPFENLFSEQSPKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~~ 150 (489)
.+.+ -....+....++.. ..+|+|| .|+.-. .|..=|.+++||.|.+.-+.+
T Consensus 154 ~~~~-~~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 154 ALVR-KFLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cccc-cccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 0000 00112222334444 6779876 566665 778889999999999754443
No 352
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.02 E-value=3e+02 Score=23.56 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=47.0
Q ss_pred CcEEEecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCCCCeEEEEEeCCccc
Q 042970 213 TFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICN 292 (489)
Q Consensus 213 ~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vVyvs~GS~~~ 292 (489)
...+++.+-++.-......+...+ |.+..+|-....-.. ...+++.+.+...++. +|+|++|+--
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~------------~~~~~i~~~I~~~~pd-iv~vglG~Pk- 113 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDE------------EEEEAIINRINASGPD-IVFVGLGAPK- 113 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCCh------------hhHHHHHHHHHHcCCC-EEEEECCCCH-
Confidence 344566665554444555566666 566666632221110 0256777777776654 9999998822
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEec
Q 042970 293 LTSSQLIELGLGLEASKKPFIWVTRV 318 (489)
Q Consensus 293 ~~~~~~~~~~~al~~~~~~~v~~~~~ 318 (489)
+-.-+.+--..++..+++.+|.
T Consensus 114 ----QE~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 114 ----QERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred ----HHHHHHHHHHHCCCCEEEEECc
Confidence 2222223333567775555554
No 353
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=33.99 E-value=3.8e+02 Score=27.28 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=26.9
Q ss_pred EEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 10 ILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 10 vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|++.... ..|-..-...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 578899999999999999999998843
No 354
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=33.89 E-value=4e+02 Score=25.71 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=25.6
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecch
Q 042970 117 PKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFS 149 (489)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~ 149 (489)
..||+|| .|+..- .+..=|.++|||.|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 5799986 676543 78888999999999975443
No 355
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=33.87 E-value=4.6e+02 Score=27.26 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 110 NLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 110 ~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
+.+++ .++|++|..... ..+|+++|||++-.
T Consensus 392 ~~l~~--~~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEM--LKPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHh--cCCCEEEecCcc---chhHhhcCCCEEEc
Confidence 45566 799999988653 47899999999763
No 356
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=33.78 E-value=3.1e+02 Score=23.66 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=30.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+--|.+++..+.|-..-.+.+|-+.+.+|+.|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34577888899999999999999999999999654
No 357
>smart00096 UTG Uteroglobin.
Probab=33.52 E-value=1.2e+02 Score=21.59 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCCC
Q 042970 426 VKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFFQDIMQQPTS 486 (489)
Q Consensus 426 ~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 486 (489)
-|++.-...+...-.|+ .+.+++.+++.-.-. +.++ ....|.++++.|...++|
T Consensus 16 gt~~~Y~~~l~~y~~~~----~~~ea~~~lK~cvD~-L~~~--~k~~i~~ll~kI~~s~~c 69 (69)
T smart00096 16 GTPSSYEASLKQFKPDP----DMLEAGRQLKKLVDT-LPQE--TRENILKLTEKIYTSPLC 69 (69)
T ss_pred CCHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhc-CCHH--HHHHHHHHHHHHHcCCCC
Confidence 46777888888888777 788888777766543 2221 235677888888877765
No 358
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.43 E-value=53 Score=31.07 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=22.8
Q ss_pred cCCCccccccccChhhHHHHHH----hCCcEeec
Q 042970 356 SHPAVGGFLTHCGWNSSLEGIS----AGVQMLTW 385 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~ 385 (489)
..+++ +|+-||=||++.+++ .++|++.+
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI 94 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGI 94 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE
Confidence 34666 999999999998866 37888887
No 359
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=33.41 E-value=66 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 26 DMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 26 ~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
-+|..|+++||+|++++.....+.+++.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4789999999999999877533334443
No 360
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=33.08 E-value=1e+02 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCCcEEEECC-CC-cchHHHHHHcCCCcEEE
Q 042970 107 PFENLFSEQSPKPCCIISDM-GY-PWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~-~~-~~~~~~A~~lgIP~v~l 145 (489)
.+.+..+. .++|.|++=. -. ..|..+|.++|+|++..
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 55556666 6899999543 33 48899999999999985
No 361
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=33.01 E-value=79 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=31.4
Q ss_pred cEEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFL--AQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p--~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
-+|++++++ +-|-..-.-+|+..|+.+|+.|.++-.
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~ 39 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDF 39 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEec
Confidence 367788876 889999999999999999999999843
No 362
>PRK08322 acetolactate synthase; Reviewed
Probab=32.88 E-value=2.2e+02 Score=29.74 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.5
Q ss_pred cccccCh------hhHHHHHHhCCcEeecC
Q 042970 363 FLTHCGW------NSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG~------~s~~eal~~GvP~l~~P 386 (489)
+++|.|- +++.+|...++|+|++.
T Consensus 67 ~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 67 CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 8888774 47889999999999995
No 363
>PLN02939 transferase, transferring glycosyl groups
Probab=32.87 E-value=72 Score=35.48 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCcEEEEecCCC-----ccCH-HHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 6 SEFHILLLPFLA-----QGHL-IPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 6 ~~~~vl~~~~p~-----~GHv-~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
++|||++++.-. .|-+ .-.-.|.++|+++||+|.+++|-.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 469999987421 2222 334578999999999999998754
No 364
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.83 E-value=61 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 106 LPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
.++.+++++ .+||+||.++ ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 455667777 7999999886 44556899999998864
No 365
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=32.77 E-value=1.4e+02 Score=30.98 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=39.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVL 54 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~ 54 (489)
..-+++...|+.|-..=.+.++.+.+.+|..|.+++.+...+.+....
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 345667777899999999999999999999999999887776665543
No 366
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.74 E-value=86 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=32.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
||++..-++.|-......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999886543
No 367
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=32.69 E-value=2.1e+02 Score=29.41 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCCCCCCCchhhHHHHHHHH
Q 042970 22 IPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCENFDMLPSIDLASKFFNSH 101 (489)
Q Consensus 22 ~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (489)
.-++.||+.|.+.|.++. ++....+.+++. |+....+..- -++|+.....-..-.......+..
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~---------GI~v~~Vsk~---TgfPEil~GRVKTLHP~IhgGiLa-- 74 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEA---------GVPVTEVSDY---TGFPEMMDGRVKTLHPKVHGGILA-- 74 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHC---------CCeEEEeecc---cCCchhhCCccccCCchhhhhhhc--
Confidence 447899999999999984 456566666655 6766655321 144554332211001121111111
Q ss_pred hhchHHHHHHHhhc-CCCCcEEEECCCCcchH
Q 042970 102 SMLQLPFENLFSEQ-SPKPCCIISDMGYPWTV 132 (489)
Q Consensus 102 ~~~~~~l~~ll~~~-~~~~D~VI~D~~~~~~~ 132 (489)
+...+. .+-+++. -...|+||++ ++++-.
T Consensus 75 rr~~~~-~~~l~~~~I~~IDlVvvN-LYPF~~ 104 (511)
T TIGR00355 75 RRGDDD-DADLEEHGIEPIDLVVVN-LYPFKE 104 (511)
T ss_pred CCCchH-HHHHHHcCCCceeEEEEe-ccChHH
Confidence 222233 3333432 3578999998 554433
No 368
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.47 E-value=3.2e+02 Score=23.39 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=52.3
Q ss_pred HHHHHHHHhcc--cCcEEEecChhhhhhHHHHHHHhhcCCceEEeCcccCCCccchhhhhcCCCCCCCchhhhhhccCCC
Q 042970 201 DINEQMLAADK--KTFGIIINTVEELESAYFREYKNAKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQ 278 (489)
Q Consensus 201 ~~~~~~~~~~~--~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (489)
+++..+.+... .....++.+-++.-..........+ |++..+|-....-... .++++.+.+...+
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~~------------~~~~i~~~I~~~~ 99 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGPE------------EEEEIIERINASG 99 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCChh------------hHHHHHHHHHHcC
Confidence 44444444432 3445666665554445555566666 5666666322111100 1344677777666
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecC
Q 042970 279 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVG 319 (489)
Q Consensus 279 ~~~vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 319 (489)
+. +|+|++|+-- .+.+ +.+-....+..++..+|..
T Consensus 100 pd-iv~vglG~Pk---QE~~--~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 100 AD-ILFVGLGAPK---QELW--IARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred CC-EEEEECCCCH---HHHH--HHHHHHHCCCCEEEEecee
Confidence 54 9999999822 1222 2223334466777766653
No 369
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.40 E-value=2.6e+02 Score=23.82 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=47.0
Q ss_pred hHHHHHHhCCcEeecCCc-CcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHH
Q 042970 371 SSLEGISAGVQMLTWPLF-GDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRR 449 (489)
Q Consensus 371 s~~eal~~GvP~l~~P~~-~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~ 449 (489)
|+.|-..+|.=.+.==-+ .=+..|+++. ++.|.=..+-.+ ..|.++|.++..+-|+|. +.+.++
T Consensus 89 S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-------------g~~k~~Il~a~~~Rl~n~-~e~E~~ 153 (176)
T COG3195 89 STSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-------------GNTKDTILAAFERRLDND-REQEFA 153 (176)
T ss_pred hHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-------------CCCHHHHHHHHHHHhccc-HHHHHH
Confidence 556666666543321000 0156799999 699998777666 578999999999988875 444555
Q ss_pred HHHHHHHHH
Q 042970 450 KRAKEFEEL 458 (489)
Q Consensus 450 ~~a~~l~~~ 458 (489)
....++...
T Consensus 154 tAl~eI~rI 162 (176)
T COG3195 154 TALAEIERI 162 (176)
T ss_pred HHHHHHHHH
Confidence 555554443
No 370
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=32.33 E-value=1.8e+02 Score=25.47 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=49.2
Q ss_pred ecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHH----HHHHHhccCChhHHHHHHHHHHHHHHH
Q 042970 384 TWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVE----TAINILMDDGEERDVRRKRAKEFEELA 459 (489)
Q Consensus 384 ~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~----~ai~~il~~~~~~~~~~~~a~~l~~~~ 459 (489)
..|...||...-..+-|-..+|+....- ..++..=.+.=..++.+.|+ +-|.++|.|+ .+-.|-+|+.+.+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tI-L~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~----~IIRnr~KI~Avi 96 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITV-LKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA----GIIRHRGKIQAII 96 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc----hhHHhHHHHHHHH
Confidence 4667788888777655788888765321 00000000000135666665 6677788887 5555555555444
Q ss_pred HHH------HhhCCChHHHHHHHH
Q 042970 460 KRA------LEEGGSSYNNIQLFF 477 (489)
Q Consensus 460 ~~~------~~~gg~~~~~~~~~~ 477 (489)
..| .+++||-...+=.|+
T Consensus 97 ~NA~~~l~i~~e~gSf~~ylW~fv 120 (187)
T PRK10353 97 GNARAYLQMEQNGEPFADFVWSFV 120 (187)
T ss_pred HHHHHHHHHHHhcCCHHHHHhhcc
Confidence 433 356777777775553
No 371
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.31 E-value=62 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCCCCCCcEEEEecCC--CccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 1 MASEASEFHILLLPFL--AQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p--~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
|+++..+++|+++... +-|| +||+++++.|+.|.-.
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEE
Confidence 5555555666665433 4444 7899999999998654
No 372
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.10 E-value=96 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=30.7
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 042970 11 LLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAAR 49 (489)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (489)
+++.+...|+...++.+++.++++|..|..+|.......
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 333344678999999999999999999999987655543
No 373
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.04 E-value=81 Score=29.85 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=31.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
|+|++.-=|+-|-..-.+.||..|+++|+.|.++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4688888899999999999999999999999988
No 374
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.85 E-value=64 Score=27.98 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+...++|.-.++.|-..=..++|+++..+|+.|.|+..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 356789999999999999999999999999999999765
No 375
>PLN02929 NADH kinase
Probab=31.82 E-value=61 Score=30.78 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=41.4
Q ss_pred CCCccccccccChhhHHHHHHh---CCcEeecCCcCc------chhhHHHHHHHhcceeEecccCCcccccccccccccc
Q 042970 357 HPAVGGFLTHCGWNSSLEGISA---GVQMLTWPLFGD------QFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVK 427 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~~---GvP~l~~P~~~D------Q~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~ 427 (489)
.+++ +|+-||=||++.|.+. ++|++.+=.... +..|.-. +..-+|..- ..+
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL~----------------~~~ 123 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHLC----------------AAT 123 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCccccc----------------cCC
Confidence 4566 9999999999998654 689888754321 1222210 011244332 366
Q ss_pred HHHHHHHHHHhccC
Q 042970 428 KDDVETAINILMDD 441 (489)
Q Consensus 428 ~~~l~~ai~~il~~ 441 (489)
.+++.+++.+++++
T Consensus 124 ~~~~~~~L~~il~g 137 (301)
T PLN02929 124 AEDFEQVLDDVLFG 137 (301)
T ss_pred HHHHHHHHHHHHcC
Confidence 78899999999864
No 376
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=31.81 E-value=1.4e+02 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 042970 426 VKKDDVETAINILMDDGEERDVRRKRAKEFEELAKRALEEGGSSYNNIQLFF 477 (489)
Q Consensus 426 ~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (489)
-+++++...+..+++ ++|.+...+| .++..... .|-+...|.+.+
T Consensus 16 ~~~~~~~~~~~~l~t-~~e~~~Ls~R-~~I~~ll~-----~G~S~~eIA~~L 60 (88)
T TIGR02531 16 KNREECYRFFDDIAT-INEIQSLAQR-LQVAKMLK-----QGKTYSDIEAET 60 (88)
T ss_pred CCHHHHHHHHHHhCC-HHHHHhhhHH-HHHHHHHH-----CCCCHHHHHHHH
Confidence 578899999999998 6666677666 44444432 556777777654
No 377
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=31.79 E-value=2.3e+02 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
++.+ +++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 88888855 6789999999999994
No 378
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.71 E-value=2.5e+02 Score=25.49 Aligned_cols=39 Identities=23% Similarity=0.081 Sum_probs=23.8
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|..+.-+-+.++++.++.| =-..+|+.|.++|++|.++.
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 5543222245555554432 34678999999999977664
No 379
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.60 E-value=68 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+..+|+++-.+..| ...++.|.+.||+|+++++.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45678888766533 78899999999999999644
No 380
>PRK00784 cobyric acid synthase; Provisional
Probab=31.51 E-value=3.6e+02 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.7
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 9 HILLLPF-LAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 9 ~vl~~~~-p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
+|.+... ..-|-..-...|++.|+++|++|..+=
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 4555544 368999999999999999999998773
No 381
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=31.41 E-value=2.6e+02 Score=29.40 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=20.3
Q ss_pred cccccCh------hhHHHHHHhCCcEeecC
Q 042970 363 FLTHCGW------NSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG~------~s~~eal~~GvP~l~~P 386 (489)
+++|.|- +.+.+|...++|||++.
T Consensus 72 ~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 72 CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 7878774 47789999999999995
No 382
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.20 E-value=73 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=22.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+++.++-.+-.| -.||++|.+.||+|++.+..
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCC
Confidence 445555444333 57899999999999999654
No 383
>PLN02924 thymidylate kinase
Probab=31.12 E-value=3.9e+02 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=31.4
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
.+=|+|--..+.|-..-.-.|++.|..+|+.|.....+
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 34577777789999999999999999999998766544
No 384
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=30.91 E-value=3.6e+02 Score=26.21 Aligned_cols=33 Identities=33% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRA-IVTIVTT 43 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH-~V~~~~~ 43 (489)
+..||+++-.++.| -.+|+.|+..|. +|+++=.
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 45789999988777 467888999999 7777743
No 385
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.84 E-value=89 Score=23.29 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.8
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 8 FHILLLPFLAQ--GHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 8 ~~vl~~~~p~~--GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
.+|+++|.... .+..-...++..|++.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466778999999999999998854
No 386
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.78 E-value=2.8e+02 Score=22.18 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=32.9
Q ss_pred chhhhhhccCCCCCeEEEEEeCCcccC-CHHHHHHHHHHHHhCCCCEEEE
Q 042970 267 VPECLTWLDSQQPSSVVYVCLGSICNL-TSSQLIELGLGLEASKKPFIWV 315 (489)
Q Consensus 267 ~~~~~~~l~~~~~~~vVyvs~GS~~~~-~~~~~~~~~~al~~~~~~~v~~ 315 (489)
.++..+|+..+ -+++|.|-.... +++.+.++++.+.+.+.-.+..
T Consensus 33 ~~d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 33 APDPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred cCCHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 35677888654 377888877776 5667888999999888776654
No 387
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=30.76 E-value=79 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCcEEEECCCC-cchHHHHHHcCCCcEEEecchH
Q 042970 106 LPFENLFSEQSPKPCCIISDMGY-PWTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 106 ~~l~~ll~~~~~~~D~VI~D~~~-~~~~~~A~~lgIP~v~l~~~~~ 150 (489)
..+.+++++......++|..++. ++|..+|+++|+|.|.+.+...
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 45566776622222477777665 4788899999999988765443
No 388
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=30.66 E-value=74 Score=30.39 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=32.9
Q ss_pred cEEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLP-FLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~-~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
||++|+. -|+-|-..=..++|..++++|++|.++++.+.+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4566666 5699999999999999999999999998876654
No 389
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=30.58 E-value=80 Score=27.97 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=26.1
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
..+.++|+++-++..| ..+|+.|.+.||+|++.
T Consensus 25 ~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3456789998887544 57899999999999954
No 390
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=30.48 E-value=74 Score=33.04 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 107 PFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
++.+.+++ .+||+||.++ ....+|+++|||++.++
T Consensus 353 el~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 55666677 7999999875 45678999999998754
No 391
>PRK04148 hypothetical protein; Provisional
Probab=30.34 E-value=98 Score=25.45 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+.++|+.+-.| .| ..+|..|++.||+|+.+
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVI 45 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEE
Confidence 35788888888 34 34688899999999988
No 392
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.32 E-value=77 Score=20.30 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 042970 427 KKDDVETAINILMDDGEERDVRRKRAKEFE 456 (489)
Q Consensus 427 ~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 456 (489)
++++|.+||..+..+. .++++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 4688999999988641 27777777654
No 393
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.27 E-value=76 Score=32.03 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 107 PFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
++.+++++ .+||++|.++ ....+|+++|+|++.++.
T Consensus 361 e~~~~i~~--~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIAR--TEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHh--hCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 45566666 7999999886 345578999999998643
No 394
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=30.26 E-value=1.7e+02 Score=27.06 Aligned_cols=49 Identities=16% Similarity=0.008 Sum_probs=42.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (489)
..-+++.-.|+.|...-.++++...+++|..|.+++.....+.+.+...
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 4567777788999999999999999999999999999888777666654
No 395
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.24 E-value=85 Score=29.84 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=38.3
Q ss_pred cCCCccccccccChhhHHHHHH----hCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 356 SHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
..+++ +|+=||=||++.|.+ .++|++.+- .-+ +|..- .++.+++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN--------~G~------lGFL~----------------~~~~~~~ 114 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN--------QGH------LGFLT----------------QIPREYM 114 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe--------cCC------CeEee----------------ccCHHHH
Confidence 34666 999999999999975 378988882 211 23322 3667788
Q ss_pred HHHHHHhccC
Q 042970 432 ETAINILMDD 441 (489)
Q Consensus 432 ~~ai~~il~~ 441 (489)
.+++.+++++
T Consensus 115 ~~~l~~i~~g 124 (296)
T PRK04539 115 TDKLLPVLEG 124 (296)
T ss_pred HHHHHHHHcC
Confidence 8888888863
No 396
>PRK03094 hypothetical protein; Provisional
Probab=30.21 E-value=47 Score=24.43 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 042970 24 MFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~ 44 (489)
+-.+.+.|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456899999999999876543
No 397
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.05 E-value=2.6e+02 Score=28.76 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEee
Q 042970 21 LIPMFDMARLLANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQ 70 (489)
Q Consensus 21 v~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (489)
=.-++.+|+.|.+.|.++. ++....+.+++. |+....+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~---------GI~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL--STGGTAKLLAEA---------GIPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC---------CCeeEEee
Confidence 4558899999999999984 456666666665 67666553
No 398
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=29.92 E-value=3.4e+02 Score=25.19 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCc-----chHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYP-----WTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~-----~~~~~A~~lgIP~v~l~ 146 (489)
.+.-.+++++ .++|+||+=...- .=..+|..+|||++.+.
T Consensus 186 ~e~n~al~~~--~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~ 230 (256)
T TIGR00715 186 EELEKALLRE--YRIDAVVTKASGEQGGELEKVKAAEALGINVIRIA 230 (256)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEe
Confidence 3444678888 8999999755432 22568999999999963
No 399
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.88 E-value=4.4e+02 Score=26.56 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=33.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHH-HhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLL-ANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L-~~rGH~V~~~~~~~~~~ 48 (489)
..++|+-.++.|-..-...||..+ ..+|+.|.+++......
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 346677677999999999999876 67899999998775444
No 400
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.88 E-value=71 Score=30.30 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=38.5
Q ss_pred hhcCCCccccccccChhhHHHHHH----hCCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHH
Q 042970 354 ILSHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKD 429 (489)
Q Consensus 354 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (489)
+...+++ +|+=||=||++.+++ .++|++.+-. -+ +|..- .++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFLt----------------~~~~~ 108 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFLA----------------TVSKE 108 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCccc----------------ccCHH
Confidence 3344666 999999999999887 3788888832 11 23222 35677
Q ss_pred HHHHHHHHhccC
Q 042970 430 DVETAINILMDD 441 (489)
Q Consensus 430 ~l~~ai~~il~~ 441 (489)
++.+++.+++++
T Consensus 109 ~~~~~l~~i~~g 120 (292)
T PRK01911 109 EIEETIDELLNG 120 (292)
T ss_pred HHHHHHHHHHcC
Confidence 788888888764
No 401
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.72 E-value=9.9 Score=31.42 Aligned_cols=68 Identities=18% Similarity=0.056 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhHHHHHHhC
Q 042970 300 ELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSSLEGISAG 379 (489)
Q Consensus 300 ~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 379 (489)
.+++-.-..|.++++.+....+.+. |.. ++ | --.++- ||-||..+ |...++
T Consensus 20 ~L~~k~~~~G~rvlI~~~d~~q~e~-----LD~---------~L---------W-t~~~~s--FiPH~~~~---e~~~~~ 70 (144)
T COG2927 20 RLAEKAWRSGWRVLIQCEDEAQAEA-----LDE---------HL---------W-TFSAES--FIPHNLAG---EPPPAG 70 (144)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHH-----HHH---------hh---------h-ccchhc--ccCCccCC---CCCCCC
Confidence 4555555789999988865443321 111 11 1 113455 99999888 888889
Q ss_pred CcEeecCCcCcchhhHHHH
Q 042970 380 VQMLTWPLFGDQFCNEKLI 398 (489)
Q Consensus 380 vP~l~~P~~~DQ~~na~~v 398 (489)
-|+++. ..++-.|++++
T Consensus 71 qPIli~--~~~~~pn~~~~ 87 (144)
T COG2927 71 QPILIA--WPGGNPNSARV 87 (144)
T ss_pred CCEEEE--cCCCCCCCCce
Confidence 997665 57888888875
No 402
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=29.71 E-value=63 Score=31.28 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=26.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689999888777 45789999999999998753
No 403
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.63 E-value=74 Score=32.97 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 042970 107 PFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFHG 147 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~ 147 (489)
.+.+.+++ .+||+||.++ ....+|+++|||++.++.
T Consensus 355 ei~~~i~~--~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHh--cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 55666666 7999999885 456789999999987543
No 404
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.60 E-value=86 Score=29.09 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=30.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
|.|.+..=|+-|...-.+.||..|+++|+.|.++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4577777789999999999999999999999888
No 405
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.46 E-value=1.1e+02 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCCCcEEEECC-CC-cchHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDM-GY-PWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~-~~-~~~~~~A~~lgIP~v~l~ 146 (489)
...+.+.++. .++|+|++=. -. +.|..+|..+|+|++...
T Consensus 39 ~~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 39 GKEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344444455 6899999543 22 478889999999999854
No 406
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=29.37 E-value=3.6e+02 Score=22.94 Aligned_cols=99 Identities=12% Similarity=-0.065 Sum_probs=57.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC-cchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIV---TTP-VNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
-|.+.+.++.|-....+.+|-+...+|+.|.|+ -.. ...+. . .... . +++++..... ......
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~-~-~l~~---l-~~v~~~~~g~-------~~~~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGEL-K-ALER---L-PNIEIHRMGR-------GFFWTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHH-H-HHHh---C-CCcEEEECCC-------CCccCC
Confidence 467788889999999999999999999999984 332 22221 1 1111 1 3677776431 111111
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP 129 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~ 129 (489)
. +.. .-............+.+++ .++|+||-|-+..
T Consensus 71 ----~--~~~-~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 71 ----E--NDE-EDIAAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred ----C--ChH-HHHHHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 0 001 1112222333445555666 7999999997653
No 407
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.16 E-value=90 Score=28.97 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=30.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
|+|.+..=|+-|-..=.+.||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4577777778999999999999999999999988
No 408
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.05 E-value=75 Score=31.90 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
+.+||.|+-.|-.| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 35789888776655 5789999999999998853
No 409
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=29.04 E-value=2.8e+02 Score=27.78 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
|||+++-.+..+ ..|+++|++-|+.++++..+.+
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCC
Confidence 578888777764 4688888888888777765543
No 410
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.97 E-value=1.4e+02 Score=29.39 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchh-hH--HHHhcCC--CeEEecccch---HhhhcCCCccccc
Q 042970 293 LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEE-NF--EERIKGR--GLLIRGWVPQ---VMILSHPAVGGFL 364 (489)
Q Consensus 293 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~--~~~v~~~~pq---~~ll~~~~~~~~I 364 (489)
....-+..+++++++.+.++.+.+..+.....++.| +.. .. ......+ .+.+.+|+|| +.+|-.+++ -+
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--Nf 268 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGRALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--NF 268 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--ce
Confidence 344567888888888888877766655544333332 210 00 0001123 4567899998 458888887 33
Q ss_pred cccChhhHHHHHHhCCcEeecCCcCcchhhHHHH
Q 042970 365 THCGWNSSLEGISAGVQMLTWPLFGDQFCNEKLI 398 (489)
Q Consensus 365 ~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 398 (489)
-. |==|+..|.-+|+|.|=-. +=|.++|...
T Consensus 269 VR-GEDSfVRAqwAgkPFvWhI--YpQ~d~aHl~ 299 (374)
T PF10093_consen 269 VR-GEDSFVRAQWAGKPFVWHI--YPQEDDAHLD 299 (374)
T ss_pred Ee-cchHHHHHHHhCCCceEec--CcCchhhHHH
Confidence 33 3459999999999988432 4455555544
No 411
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.94 E-value=4e+02 Score=26.26 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYPWTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~ 146 (489)
...+.+.+++ .+||++|.+. .....++++|||++.+.
T Consensus 337 ~~~~~~~~~~--~~pdl~ig~~---~~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 337 LEELEELIRE--LKPDLIIGGS---KGRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHHHhh--cCCCEEEECC---cHHHHHHHhCCCEEEcC
Confidence 3456667777 7999999885 45778888999998643
No 412
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.79 E-value=69 Score=22.57 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEE
Q 042970 25 FDMARLLANHRAIVTIV 41 (489)
Q Consensus 25 l~La~~L~~rGH~V~~~ 41 (489)
+..|..|+++|++|+++
T Consensus 9 l~aA~~L~~~g~~v~v~ 25 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVF 25 (68)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 67899999999999998
No 413
>PRK09739 hypothetical protein; Provisional
Probab=28.69 E-value=1.4e+02 Score=26.37 Aligned_cols=38 Identities=8% Similarity=-0.055 Sum_probs=22.4
Q ss_pred CCCcEEEEecC-CCc-cCHHH-HHHHHHHHHhCCCeEEEEe
Q 042970 5 ASEFHILLLPF-LAQ-GHLIP-MFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 5 ~~~~~vl~~~~-p~~-GHv~P-~l~La~~L~~rGH~V~~~~ 42 (489)
|+++||+++.. |-. |...- .-.+++.|.++||+|+.+-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34677887754 422 22222 3334566777899998774
No 414
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.54 E-value=3.6e+02 Score=22.74 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=81.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCcc
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVG 361 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~ 361 (489)
.|-|-+||.. +-+..+..++.|+++++.+-..+-+.+...+. -..+.+.....++.+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~-----m~~ya~~a~~~g~~v---------------- 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEK-----MFEYAEEAEERGVKV---------------- 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHH-----HHHHHHHHHHCCCeE----------------
Confidence 4778889866 55667778888888888876554443322111 012222222334432
Q ss_pred ccccccChh----hHHHHHHhCCcEeecCCcCc---chhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHH
Q 042970 362 GFLTHCGWN----SSLEGISAGVQMLTWPLFGD---QFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETA 434 (489)
Q Consensus 362 ~~I~HgG~~----s~~eal~~GvP~l~~P~~~D---Q~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 434 (489)
+|.-.|.- ++ -|...=+|+|.+|.-.. --+--.-++ +.--|+-+-+- ..+...|+.-++..
T Consensus 61 -iIAgAGgAAHLPGm-vAa~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTv---------aIg~a~NAallAa~ 128 (162)
T COG0041 61 -IIAGAGGAAHLPGM-VAAKTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATV---------AIGNAANAALLAAQ 128 (162)
T ss_pred -EEecCcchhhcchh-hhhcCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEE---------eecchhhHHHHHHH
Confidence 44433311 22 23445789999998632 222333444 55555433211 11124667766666
Q ss_pred HHHhccCChhHHHHHHHHHHHHHHHHHHHhh
Q 042970 435 INILMDDGEERDVRRKRAKEFEELAKRALEE 465 (489)
Q Consensus 435 i~~il~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (489)
|-.+ .|+ .++++..++++..++.+.+
T Consensus 129 ILa~-~d~----~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 129 ILAI-KDP----ELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHcC-CCH----HHHHHHHHHHHHHHHHHHh
Confidence 6544 567 9999999999999887655
No 415
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=28.53 E-value=98 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 4 EASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
++..++||++..---==..-+-.....|.++||+|++++
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEE
Confidence 345677777653222222344556667789999999884
No 416
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=28.48 E-value=1.7e+02 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred cccccCh------hhHHHHHHhCCcEeecC
Q 042970 363 FLTHCGW------NSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG~------~s~~eal~~GvP~l~~P 386 (489)
+++|.|- +.+.+|-..++|+|++.
T Consensus 76 ~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 76 VIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 7888884 47889999999999994
No 417
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.46 E-value=84 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=23.8
Q ss_pred cCCCccccccccChhhHHHHHHh----CCcEeecC
Q 042970 356 SHPAVGGFLTHCGWNSSLEGISA----GVQMLTWP 386 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P 386 (489)
..+++ +|+=||=||++.|++. ++|++.+.
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN 103 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVN 103 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEe
Confidence 34666 9999999999998764 78998884
No 418
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.37 E-value=2.5e+02 Score=22.89 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=36.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAARLKTV 53 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (489)
+|++-+..+-+|-.----++..|.+.|++|+-.......+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 478889999999999999999999999999998765554444333
No 419
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=28.12 E-value=1.8e+02 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCCccccccccCh------hhHHHHHHhCCcEeecCC
Q 042970 357 HPAVGGFLTHCGW------NSSLEGISAGVQMLTWPL 387 (489)
Q Consensus 357 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 387 (489)
++.+ +++|.|- +++.+|...++|+|++.-
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3445 8888874 477789999999999864
No 420
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=28.09 E-value=1.2e+02 Score=24.95 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=28.9
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 11 LLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
.++.++..--+.|.+-++...+++|+||+++.+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4455677888999999999999999999988764
No 421
>PRK07236 hypothetical protein; Provisional
Probab=28.07 E-value=70 Score=31.60 Aligned_cols=35 Identities=17% Similarity=-0.042 Sum_probs=28.3
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
|-+ |++++|+++-.+-. -+.+|..|+++|++|+++
T Consensus 1 ~~~-~~~~~ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~ 35 (386)
T PRK07236 1 MTH-MSGPRAVVIGGSLG-----GLFAALLLRRAGWDVDVF 35 (386)
T ss_pred CCC-CCCCeEEEECCCHH-----HHHHHHHHHhCCCCEEEE
Confidence 445 44789999987743 488999999999999998
No 422
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.97 E-value=77 Score=27.99 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecch
Q 042970 117 PKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFS 149 (489)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~ 149 (489)
..||+|| .|+..- -|..-|.++|||.|.+.-+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 4788876 787554 67888999999999975433
No 423
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.73 E-value=76 Score=27.39 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred CCCccccccccChhhHHHHHHhCCcEeecCCcC
Q 042970 357 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFG 389 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 389 (489)
.+++ +|++||......... ++|+|-+|..+
T Consensus 34 g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 34 GADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp T-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred CCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 3455 999999999988877 99999999754
No 424
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.71 E-value=2.5e+02 Score=25.13 Aligned_cols=49 Identities=10% Similarity=-0.046 Sum_probs=36.8
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHHHH
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVTTPVNAARLKTVLA 55 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~~~~~~~~~~~~~~ 55 (489)
..-+++.-.|+.|-..=.++++.+-+++ |..|.+++.+...+.+.+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 3457777788999999999999888788 999999998877766655544
No 425
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=27.50 E-value=3.6e+02 Score=28.51 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=22.5
Q ss_pred CCCccccccccCh------hhHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCGW------NSSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 386 (489)
++.+ +++|.|- +.+.+|...++|+|++.
T Consensus 68 ~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 8899884 47779999999999995
No 426
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=27.31 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=28.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCe-EEEE
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAI-VTIV 41 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~-V~~~ 41 (489)
=|+|.-.|..|-......|.++|+++||. ++.+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~i 36 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRI 36 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEE
Confidence 47788899999999999999999999986 4443
No 427
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=4.5e+02 Score=26.11 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=33.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
.=|+|+-.-+.|-..-+-.||..++++|..+-+++....++
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 44556666699999999999999999999999887665543
No 428
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.12 E-value=82 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCCccccccccChhhHHHHHHh----CCcEeec
Q 042970 357 HPAVGGFLTHCGWNSSLEGISA----GVQMLTW 385 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~ 385 (489)
.+++ +|+=||=||++.+++. ++|++.+
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEE
Confidence 4566 9999999999999774 7898888
No 429
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.06 E-value=3.7e+02 Score=22.33 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=59.3
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCCC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANH--RAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCEN 84 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (489)
+++|++.. .-.+=.-++.+++.|.+. |+++ ++++...+.+++. .|+....+- . + +.+
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi-~----~-~~g--- 62 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLL-S----G-PLG--- 62 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEE-c----C-CCC---
Confidence 45565555 445678899999999999 9995 3455555544432 144443331 0 0 110
Q ss_pred CCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEE--CCCCc--------chHHHHHHcCCCcEEE
Q 042970 85 FDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIIS--DMGYP--------WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~--D~~~~--------~~~~~A~~lgIP~v~l 145 (489)
-.+.+.+++++ .++|+||. |+... .-..+|-..|||+++-
T Consensus 63 -------------------g~~~i~~~I~~--g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 63 -------------------GDQQIGALIAE--GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred -------------------CchhHHHHHHc--CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 01246667777 89999997 43332 2344688899999983
No 430
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.83 E-value=77 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 042970 22 IPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 22 ~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
.|.+.|+++|.++|.+|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 79999999999999999887443
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.73 E-value=1.4e+02 Score=21.75 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=28.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 10 ILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 10 vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
+++...++.|-..-...|+..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666688999999999999999999998875
No 432
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=26.55 E-value=1.3e+02 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=31.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~ 45 (489)
++||-|=..|+-|-...||.=|++|+++|-+|.+...+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 578888899999999999999999999999999886553
No 433
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=26.30 E-value=1.2e+02 Score=26.89 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=28.0
Q ss_pred cEEEEecCCCccC--HHHHHHHHHHHHhC---CCeEEEEeCCcchhhH
Q 042970 8 FHILLLPFLAQGH--LIPMFDMARLLANH---RAIVTIVTTPVNAARL 50 (489)
Q Consensus 8 ~~vl~~~~p~~GH--v~P~l~La~~L~~r---GH~V~~~~~~~~~~~~ 50 (489)
||||+..|+-+|+ .||.-.+++.|.++ |++|....-+...+..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lPV~~~~~ 48 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELPVSYEKA 48 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE-SSHHHH
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEecCchHhH
Confidence 6889888774444 79999999999854 7777666555444333
No 434
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=26.27 E-value=1e+02 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=19.3
Q ss_pred EecCCCcc--CH--HHHHHHHHHHHhCCCeEE
Q 042970 12 LLPFLAQG--HL--IPMFDMARLLANHRAIVT 39 (489)
Q Consensus 12 ~~~~p~~G--Hv--~P~l~La~~L~~rGH~V~ 39 (489)
+++.|..| +. ..+-..++.|+++||+|.
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCCCEEe
Confidence 34455445 33 567788999999998775
No 435
>PRK12829 short chain dehydrogenase; Provisional
Probab=26.26 E-value=1.1e+02 Score=27.94 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
++..+++++ ++.|.+ -..+++.|.++||+|+.+.-
T Consensus 9 ~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 445565554 333555 37789999999999887764
No 436
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=26.17 E-value=5.8e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=22.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|||+|+..+. -.+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 5788885543 356778888888999886654
No 437
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=26.08 E-value=1.5e+02 Score=29.67 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=22.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEe
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANH-RAIVTIVT 42 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~V~~~~ 42 (489)
|||+++-.++..| +|++.|++. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 5899999997776 599999886 54444443
No 438
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.93 E-value=96 Score=24.02 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCCCcEEEECC---CCcchHHHHHHcCCCcEE
Q 042970 105 QLPFENLFSEQSPKPCCIISDM---GYPWTVDTAAKFNVPRIV 144 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~---~~~~~~~~A~~lgIP~v~ 144 (489)
.+.+.++.++ .++|+||..+ +.....+..++.|||+..
T Consensus 51 ~~~l~~~a~~--~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKE--NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHH--TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHH--cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 3466777777 8999999988 444678888999999875
No 439
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=70 Score=32.55 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=23.9
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+||+++-.|.. -|+-|.+|+++||+||++
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ 29 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLY 29 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEE
Confidence 57777776654 488899999999999998
No 440
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=25.88 E-value=5.4e+02 Score=27.14 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=35.7
Q ss_pred chHHHHHHHhhcCCCCcEEE----ECCCCcchHHHHHHc-CCCcEEEecchHH
Q 042970 104 LQLPFENLFSEQSPKPCCII----SDMGYPWTVDTAAKF-NVPRIVFHGFSCF 151 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI----~D~~~~~~~~~A~~l-gIP~v~l~~~~~~ 151 (489)
....++..++. ..+|.+| ||-..+.....|..+ ++|.|.+...+..
T Consensus 131 IA~sie~~l~~--~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGpM~ 181 (601)
T TIGR01196 131 IAMSTAIGLSH--NMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGPMV 181 (601)
T ss_pred HHHHHHHHhcC--CCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcC
Confidence 34456666666 8999876 777778888899999 8999998777654
No 441
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=25.86 E-value=80 Score=28.23 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcc-------hHHHHHHcCCCcEEEe
Q 042970 107 PFENLFSEQSPKPCCIISDMGYPW-------TVDTAAKFNVPRIVFH 146 (489)
Q Consensus 107 ~l~~ll~~~~~~~D~VI~D~~~~~-------~~~~A~~lgIP~v~l~ 146 (489)
.+.++++++...||+|+.|..... |..+...+|+|+|.+.
T Consensus 82 ~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 82 PLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 355555554468999999986543 3444555668888853
No 442
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.61 E-value=1.2e+02 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCCCCCCcEEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 1 MASEASEFHILLLPFLAQ-GHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~-GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|+..++. |+++++.++. +-+ -.++|++|+++|++|.+..
T Consensus 1 ~~~~l~~-k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CccccCC-CEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEec
Confidence 6666644 4555655541 122 2789999999999998764
No 443
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=25.60 E-value=83 Score=31.67 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 5 ASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+++.|||++-.+..| +.+|+.|...+++||++...
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCC
Confidence 567899999877655 45688887778999999755
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.58 E-value=86 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
.++||.|+-.|..|. .+|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 357899998887774 7899999999999988654
No 445
>PLN02293 adenine phosphoribosyltransferase
Probab=25.57 E-value=1.7e+02 Score=25.68 Aligned_cols=40 Identities=5% Similarity=-0.046 Sum_probs=28.2
Q ss_pred chHHHHHHHhhcCCCCcEEEE-CCCC-cchHHHHHHcCCCcEEE
Q 042970 104 LQLPFENLFSEQSPKPCCIIS-DMGY-PWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI~-D~~~-~~~~~~A~~lgIP~v~l 145 (489)
..+.+.+.++. .++|+|++ +.-. +.|..+|..+|+|++..
T Consensus 50 ~~~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 50 TIDLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 44455555555 68999984 3333 37888999999998864
No 446
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=25.50 E-value=1.6e+02 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=21.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 042970 280 SSVVYVCLGSICNLTSSQLIELGLGLEAS 308 (489)
Q Consensus 280 ~~vVyvs~GS~~~~~~~~~~~~~~al~~~ 308 (489)
+..||+++||......+.+...+..|.+.
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 34699999998865556677777777663
No 447
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=25.46 E-value=3.8e+02 Score=27.14 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
.+|||++..+++.| +|++.|++.|++|.++-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 47899998888777 588899888988877743
No 448
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=25.44 E-value=77 Score=32.53 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=29.8
Q ss_pred hchHHHHHHHhhcCCCCcEEE----ECCCCcchHHHHHHcCCCcEEEecchHHH
Q 042970 103 MLQLPFENLFSEQSPKPCCII----SDMGYPWTVDTAAKFNVPRIVFHGFSCFC 152 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~l~~~~~~~ 152 (489)
.....++..++. ..+|.+| ||-..+....+|..+|||.|.+...+..+
T Consensus 66 lIAd~iE~~~~a--~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~~ 117 (521)
T PF00920_consen 66 LIADSIEEMVRA--HPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPMLP 117 (521)
T ss_dssp HHHHHHHHHHTT-----SEEEEE--STTCCHHHHHHHHTTTS-EEE--------
T ss_pred HHHHHHHHHHhC--CCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCCC
Confidence 456677777887 8999987 67677888999999999999987777654
No 449
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=25.32 E-value=1.3e+02 Score=27.97 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=29.2
Q ss_pred CCcEEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 6 SEFHILLLPF--LAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 6 ~~~~vl~~~~--p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+..|++.++. |+.|-..=.+.||..|++.|+.|.++
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4456666654 48888888999999999999999988
No 450
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.18 E-value=63 Score=23.82 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 042970 24 MFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~ 44 (489)
+-.+.+.|+++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 457899999999999988655
No 451
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=25.13 E-value=1.6e+02 Score=27.69 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=30.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
.+++++..+. =+.|++.+++.|.++|++|+++....+.+
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 4788877554 48999999999999999999886655443
No 452
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.99 E-value=90 Score=27.76 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=25.9
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecchH
Q 042970 117 PKPCCII-SDMGYP-WTVDTAAKFNVPRIVFHGFSC 150 (489)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~l~~~~~ 150 (489)
..||+|| .|+..- -|..=|.++|||.|.+.-+.+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 4888876 777554 677789999999999864433
No 453
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.95 E-value=4.8e+02 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCccccccccChh------hHHHHHHhCCcEeecC
Q 042970 357 HPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (489)
Q Consensus 357 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 386 (489)
++.+ +++|.|-| .+.+|...++|+|++-
T Consensus 71 ~~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 71 RPGI--CFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3444 88898844 7789999999999983
No 454
>PRK04940 hypothetical protein; Provisional
Probab=24.80 E-value=1.4e+02 Score=25.93 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=25.6
Q ss_pred CCcEEEECCCC-cchHHHHHHcCCCcEEEecc
Q 042970 118 KPCCIISDMGY-PWTVDTAAKFNVPRIVFHGF 148 (489)
Q Consensus 118 ~~D~VI~D~~~-~~~~~~A~~lgIP~v~l~~~ 148 (489)
+++++|..++. +||..+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 56788877766 59999999999999997553
No 455
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.77 E-value=5e+02 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=23.8
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVN 46 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~ 46 (489)
.+|++++.-+ .-.+.+++.|.+-|-+|..+.++..
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4677775443 4556778888888888887766544
No 456
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.59 E-value=1.4e+02 Score=24.22 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=27.7
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHh--CCCCEEEEEec
Q 042970 281 SVVYVCLGSICNLTSSQLIELGLGLEA--SKKPFIWVTRV 318 (489)
Q Consensus 281 ~vVyvs~GS~~~~~~~~~~~~~~al~~--~~~~~v~~~~~ 318 (489)
.++++++||......+.+..+.+.+++ .+..+-|++-.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999887445567777777763 46677777653
No 457
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.43 E-value=4.6e+02 Score=24.19 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=29.1
Q ss_pred hHHHHHHHhhcCCCCcEEEECCCCc----chHHHHHHcCCCcEEEe
Q 042970 105 QLPFENLFSEQSPKPCCIISDMGYP----WTVDTAAKFNVPRIVFH 146 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI~D~~~~----~~~~~A~~lgIP~v~l~ 146 (489)
.+.-.+++++ .+.|+||+=...- .=..+|+.+|||++.+.
T Consensus 179 ~e~n~aL~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 179 LELERALLRQ--HRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 3444677888 8999999654322 23568999999999963
No 458
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=24.42 E-value=3.8e+02 Score=28.04 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.5
Q ss_pred cccccCh------hhHHHHHHhCCcEeecC
Q 042970 363 FLTHCGW------NSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG~------~s~~eal~~GvP~l~~P 386 (489)
+++|.|- +++.+|...++|+|++-
T Consensus 68 ~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 68 VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888774 47889999999999994
No 459
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.42 E-value=83 Score=28.90 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCcEEE
Q 042970 105 QLPFENLFSEQSPKPCCII--SDMGYP----WTVDTAAKFNVPRIVF 145 (489)
Q Consensus 105 ~~~l~~ll~~~~~~~D~VI--~D~~~~----~~~~~A~~lgIP~v~l 145 (489)
.+.+.+++++ .+.|+|| +.+|.. =+..+|+..|||++.|
T Consensus 55 ~e~l~~~l~e--~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLRE--EGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHH--cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4578889998 8999998 333332 2466899999999995
No 460
>PLN02240 UDP-glucose 4-epimerase
Probab=24.39 E-value=1.1e+02 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=22.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
.++|+++ |+.|.+ -..|++.|.++||+|+.+.
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEe
Confidence 4555553 455666 3467899999999999885
No 461
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=24.35 E-value=6.9e+02 Score=24.58 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHHHHHH-HHHHh-CCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHh---hhcCCCccccccccC-
Q 042970 295 SSQLIELG-LGLEA-SKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVM---ILSHPAVGGFLTHCG- 368 (489)
Q Consensus 295 ~~~~~~~~-~al~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~---ll~~~~~~~~I~HgG- 368 (489)
.+.+.+++ ..+.+ .+.+|++.-.++. ..+++| -.++-...+.+.+.+-+|++. +|.+.++ |++-.=
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee-----~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEE-----MLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHH-----HHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 45555554 45553 5778776654432 222222 122222367888888998854 6778888 776543
Q ss_pred ---hhhHHHHHHhCCcEeec
Q 042970 369 ---WNSSLEGISAGVQMLTW 385 (489)
Q Consensus 369 ---~~s~~eal~~GvP~l~~ 385 (489)
.-.+.||..+|.|+|..
T Consensus 282 Eafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 22567999999999976
No 462
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=24.33 E-value=3.3e+02 Score=28.31 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=37.1
Q ss_pred hchHHHHHHHhhcCCCCcEEE----ECCCCcchHHHHHHcCCCcEEEecchHH
Q 042970 103 MLQLPFENLFSEQSPKPCCII----SDMGYPWTVDTAAKFNVPRIVFHGFSCF 151 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~l~~~~~~ 151 (489)
.....++..++. ..+|.+| ||-..+....+|..+|||.|.+...+..
T Consensus 76 lIAdsiE~~~~~--~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm~ 126 (535)
T TIGR00110 76 IIADSVETMVNA--HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPML 126 (535)
T ss_pred HHHHHHHHHHhc--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcc
Confidence 345566777777 8999987 6767788889999999999999776644
No 463
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=24.29 E-value=1.5e+02 Score=23.89 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=27.3
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 11 LLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+++..|..++-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5556666677788999999999999999888544
No 464
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.21 E-value=2.8e+02 Score=26.57 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.7
Q ss_pred hhhhhhccCCCCCeEEEEEeCCccc
Q 042970 268 PECLTWLDSQQPSSVVYVCLGSICN 292 (489)
Q Consensus 268 ~~~~~~l~~~~~~~vVyvs~GS~~~ 292 (489)
.+..+.....+++.|||++.|=..+
T Consensus 121 ~dal~iA~enpdk~VVffaiGFETT 145 (364)
T COG0409 121 MDALKIAKENPDKKVVFFAIGFETT 145 (364)
T ss_pred HHHHHHHhhCCCCceEEEeCccccC
Confidence 3445555566778899999986665
No 465
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=24.19 E-value=1.4e+02 Score=28.19 Aligned_cols=37 Identities=14% Similarity=-0.125 Sum_probs=27.7
Q ss_pred CCcEEEEecCCCccC----HHHHHHHHHHHHhCCCeEEEEe
Q 042970 6 SEFHILLLPFLAQGH----LIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 6 ~~~~vl~~~~p~~GH----v~P~l~La~~L~~rGH~V~~~~ 42 (489)
+++||+++..+..+- +.-.-+++++|.+.||+|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 477899888764332 3555678889999999998874
No 466
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.16 E-value=1.2e+02 Score=26.54 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=21.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|||.++- .||+ -+.+|..|+++||+|+.+=
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEe
Confidence 4666663 3444 3788999999999999983
No 467
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.14 E-value=1.5e+02 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=29.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+|.|..=|+-|-..-.+.||..|+++|+.|.++
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 455556679999999999999999999999998
No 468
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.98 E-value=97 Score=29.40 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=22.6
Q ss_pred cCCCccccccccChhhHHHHHH----hCCcEeec
Q 042970 356 SHPAVGGFLTHCGWNSSLEGIS----AGVQMLTW 385 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~ 385 (489)
..+++ +|+=||=||++.+++ +++|++.+
T Consensus 62 ~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 62 QQADL--AIVVGGDGNMLGAARVLARYDIKVIGI 93 (292)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEE
Confidence 34666 999999999999975 36788877
No 469
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=23.90 E-value=1.6e+02 Score=26.51 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=31.5
Q ss_pred CcEEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 7 EFHILLLPFL-AQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 7 ~~~vl~~~~p-~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+..|++++=+ -.+...+.....+.|+++|+.|.++++.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4457777766 6888999999999999999999999876
No 470
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.89 E-value=39 Score=31.68 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=33.1
Q ss_pred ccChhhHH--HHHHhCCcEeecCCcCcchhhHHH-HHHHhcce
Q 042970 366 HCGWNSSL--EGISAGVQMLTWPLFGDQFCNEKL-IVEVLRIG 405 (489)
Q Consensus 366 HgG~~s~~--eal~~GvP~l~~P~~~DQ~~na~~-v~e~~g~G 405 (489)
-||||+++ -|-.+||-++.+-+...|..++.. + ...|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~-~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI-AARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH-HHcCCC
Confidence 57888765 566779999999999999999997 6 588888
No 471
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.78 E-value=3.3e+02 Score=24.37 Aligned_cols=37 Identities=30% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|...+ .++++++ ++.|.+- ..||+.|.++||+|+++.
T Consensus 1 ~~~~~-~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLD-SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcC-CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 44433 3455444 3335553 588999999999998864
No 472
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.73 E-value=5.5e+02 Score=26.74 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=24.9
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCcEEEecc
Q 042970 117 PKPCCIISDMGYPWTVDTAAKFNVPRIVFHGF 148 (489)
Q Consensus 117 ~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~ 148 (489)
.++++||+|. -+...|+++|++.+.+...
T Consensus 144 ~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 6999999995 4578999999999998664
No 473
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.72 E-value=3.5e+02 Score=28.61 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCccccccccChhhH
Q 042970 293 LTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVGGFLTHCGWNSS 372 (489)
Q Consensus 293 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~HgG~~s~ 372 (489)
..++.+.+++...+..+.+++++..+.... ||. .+....+.--|=--++.+ .-+|+.++
T Consensus 449 r~~~~~~~~~~~~~~~~~~v~i~~ag~~~~-------l~~-----------~~a~~t~~pvi~vp~~~~---~~~g~~~l 507 (577)
T PLN02948 449 RTPERMFSYARSAHSRGLQVIIAGAGGAAH-------LPG-----------MVASMTPLPVIGVPVKTS---HLDGLDSL 507 (577)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEEcCcccc-------chH-----------HHhhccCCCEEEcCCCCC---CCCcHHHH
Q ss_pred HHHHHh--CCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHHHHHHHHhccCChhHHHHHH
Q 042970 373 LEGISA--GVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDVETAINILMDDGEERDVRRK 450 (489)
Q Consensus 373 ~eal~~--GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~ 450 (489)
+..+.. |+| +.-...|-..||+.++ ...- ......|.+.++.... ++++
T Consensus 508 ~s~~~~p~g~p--v~~v~i~~~~~aa~~a--------~~i~-------------~~~~~~~~~~~~~~~~------~~~~ 558 (577)
T PLN02948 508 LSIVQMPRGVP--VATVAIGNATNAGLLA--------VRML-------------GASDPDLLDKMEAYQE------DMRD 558 (577)
T ss_pred HHHhcCCCCCe--EEEEecCChHHHHHHH--------HHHH-------------hcCCHHHHHHHHHHHH------HHHH
Q ss_pred HHHHHHHHHHH
Q 042970 451 RAKEFEELAKR 461 (489)
Q Consensus 451 ~a~~l~~~~~~ 461 (489)
.+.+-.+++++
T Consensus 559 ~~~~~~~~~~~ 569 (577)
T PLN02948 559 MVLEKAEKLEE 569 (577)
T ss_pred HHHhhhHHHHh
No 474
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.70 E-value=5.3e+02 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCcEEEECCCCcchHHHHHHcCCCcEEE
Q 042970 118 KPCCIISDMGYPWTVDTAAKFNVPRIVF 145 (489)
Q Consensus 118 ~~D~VI~D~~~~~~~~~A~~lgIP~v~l 145 (489)
++|++|.++. ...+|+++|||++.+
T Consensus 371 ~~dliig~s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNSH---GRQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 7999998864 477999999999974
No 475
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.67 E-value=1.2e+02 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 042970 23 PMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 23 P~l~La~~L~~rGH~V~~~~~~ 44 (489)
--+.+|..|+++|.+|+++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4589999999999999999653
No 476
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.57 E-value=1.3e+02 Score=30.56 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=29.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
.+||+++-.+-.| +++|+.|+++|++|++.=.
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~ 38 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDD 38 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcC
Confidence 7899999999888 9999999999999999843
No 477
>PRK05858 hypothetical protein; Provisional
Probab=23.52 E-value=4.7e+02 Score=27.31 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=20.2
Q ss_pred cccccC------hhhHHHHHHhCCcEeecC
Q 042970 363 FLTHCG------WNSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG------~~s~~eal~~GvP~l~~P 386 (489)
+++|.| .+++.+|...++|+|++.
T Consensus 71 ~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 71 AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 777877 447889999999999985
No 478
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.52 E-value=98 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=23.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTT 43 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~ 43 (489)
|+|+++-.+-.| ..||+.|.+.||+|+.+-.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~ 31 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDR 31 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEc
Confidence 356666655433 6799999999999999843
No 479
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=23.45 E-value=5.2e+02 Score=22.80 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=55.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe---CC-cchhhHHHHHHHhhhCCCceEEEEeeCCcccCCCCCCCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT---TP-VNAARLKTVLARAVQSGLQIRLVEIQFPWQEAGLPQGCE 83 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (489)
-=|.+++..+.|-...-+.+|-+-.-+|..|.++- .. .+.+...- .. .+..+.|+..+ ++..
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~--~~---~~~~v~~~~~~---------~g~t 94 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAAL--EK---FGLGVEFHGMG---------EGFT 94 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHH--Hh---hccceeEEecC---------Ccee
Confidence 34677788899999888888877777788877662 12 22221111 10 12356776543 3322
Q ss_pred CCCCCCchhhHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCCCc
Q 042970 84 NFDMLPSIDLASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMGYP 129 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~~~ 129 (489)
........+ . .......+.-.+.+.+ .+.|+||.|-+.+
T Consensus 95 w~~~~~~~d----~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 95 WETQDREAD----I-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred CCCcCcHHH----H-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 221111111 1 2222233344555666 7999999998763
No 480
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.39 E-value=80 Score=29.63 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 042970 26 DMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 26 ~La~~L~~rGH~V~~~~~~ 44 (489)
-+|..|.+.||+|++++-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999764
No 481
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.31 E-value=1.3e+02 Score=23.78 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEe-------cccchHhhhc---CCCcccccc
Q 042970 296 SQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIR-------GWVPQVMILS---HPAVGGFLT 365 (489)
Q Consensus 296 ~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-------~~~pq~~ll~---~~~~~~~I~ 365 (489)
+.-.++++++++.+++++........... .+. ..+..+.. .|+....|+. ...+ ...
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s~--------~~~---~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i 78 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVST--------HVD---MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAI 78 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTGH--------HHH---HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEE
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcccc--------ccc---ccccceecCcchhhhhhccHHHHhhHhhhhcC--ccc
Confidence 34567899999999999998876543211 110 13344443 3566555543 3345 888
Q ss_pred ccChhhHHHHH
Q 042970 366 HCGWNSSLEGI 376 (489)
Q Consensus 366 HgG~~s~~eal 376 (489)
|+|+|-..|..
T Consensus 79 ~pGyg~lse~~ 89 (110)
T PF00289_consen 79 HPGYGFLSENA 89 (110)
T ss_dssp ESTSSTTTTHH
T ss_pred ccccchhHHHH
Confidence 99998777763
No 482
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=23.28 E-value=2e+02 Score=30.02 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=36.7
Q ss_pred chHHHHHHHhhcCCCCcEEE----ECCCCcchHHHHHHcCCCcEEEecchHH
Q 042970 104 LQLPFENLFSEQSPKPCCII----SDMGYPWTVDTAAKFNVPRIVFHGFSCF 151 (489)
Q Consensus 104 ~~~~l~~ll~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~l~~~~~~ 151 (489)
....++..++. ..+|.+| ||-..+....++..++||.|.++..|..
T Consensus 108 IAds~e~~~~~--~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM~ 157 (575)
T COG0129 108 IADSVEEVLSA--HPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPML 157 (575)
T ss_pred HHHHHHHHHhc--cCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcCC
Confidence 34566777777 8899987 6767788888999999999998777654
No 483
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.28 E-value=1.3e+02 Score=30.02 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=29.9
Q ss_pred CcEEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEE
Q 042970 7 EFHILLLPF--LAQGHLIPMFDMARLLANHRAIVTIV 41 (489)
Q Consensus 7 ~~~vl~~~~--p~~GHv~P~l~La~~L~~rGH~V~~~ 41 (489)
+++|+.+.. |+.|-..-.+.||..|+.+|+.|.++
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 456665554 69999999999999999999999988
No 484
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=23.26 E-value=6.4e+02 Score=23.80 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhchHHHHHHHhhcCCCCcEEEECCC
Q 042970 93 LASKFFNSHSMLQLPFENLFSEQSPKPCCIISDMG 127 (489)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~ll~~~~~~~D~VI~D~~ 127 (489)
....+..+.-.....+.+++.....+|.+.|+.+.
T Consensus 77 ~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSA 111 (297)
T COG1090 77 QKEEIRQSRINTTEKLVELIAASETKPKVLISASA 111 (297)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecce
Confidence 33444444445667777888755589999997753
No 485
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.20 E-value=1.3e+02 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=34.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTPVNAA 48 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~~~~~ 48 (489)
..++|+-.++.|-.+=..++|++|..+|+.|.|++......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 56888888899999989999999999999999998764333
No 486
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=23.20 E-value=1.1e+02 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=26.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+||.|+-.+..| .+.|+.|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 467888888777 47899999999999998543
No 487
>PRK11269 glyoxylate carboligase; Provisional
Probab=23.20 E-value=4.1e+02 Score=28.12 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=20.5
Q ss_pred cccccC------hhhHHHHHHhCCcEeecC
Q 042970 363 FLTHCG------WNSSLEGISAGVQMLTWP 386 (489)
Q Consensus 363 ~I~HgG------~~s~~eal~~GvP~l~~P 386 (489)
+++|.| .+.+.+|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 666766 678999999999999984
No 488
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=23.14 E-value=1.5e+02 Score=27.23 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
++.+++...-++.|-......||..|+.+|+.|.++-..
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345555556779999999999999999999999998443
No 489
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=22.96 E-value=3.2e+02 Score=28.43 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=37.3
Q ss_pred hchHHHHHHHhhcCCCCcEEE----ECCCCcchHHHHHHcCCCcEEEecchHH
Q 042970 103 MLQLPFENLFSEQSPKPCCII----SDMGYPWTVDTAAKFNVPRIVFHGFSCF 151 (489)
Q Consensus 103 ~~~~~l~~ll~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~l~~~~~~ 151 (489)
.....++..++. ..+|.+| ||-..+....+|..+|||.|.+...+..
T Consensus 96 liA~~iE~~~~a--~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm~ 146 (552)
T PRK00911 96 VIADSIETVVNA--HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPIL 146 (552)
T ss_pred HHHHHHHHHhhC--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcC
Confidence 345567777777 8999987 6767778888999999999999777643
No 490
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.86 E-value=1.5e+02 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=26.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 7 EFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
...|++++++.. +...+..++.|.+.|..+.++.
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEe
Confidence 456888888876 5677888999998898888763
No 491
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.77 E-value=65 Score=32.04 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=22.6
Q ss_pred CccCHHHHH---HHHHHHHhCCCeEEEEeCCc
Q 042970 17 AQGHLIPMF---DMARLLANHRAIVTIVTTPV 45 (489)
Q Consensus 17 ~~GHv~P~l---~La~~L~~rGH~V~~~~~~~ 45 (489)
-.||+.|++ .+++-++.+||+|.|++...
T Consensus 15 HlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 469999777 57888889999999997643
No 492
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.72 E-value=1.3e+02 Score=28.42 Aligned_cols=38 Identities=5% Similarity=-0.204 Sum_probs=27.3
Q ss_pred CcEEEEecCC-CccCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 042970 7 EFHILLLPFL-AQGHLI---PMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 7 ~~~vl~~~~p-~~GHv~---P~l~La~~L~~rGH~V~~~~~~ 44 (489)
+++|++++.+ +.=|-. -.-.+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4588888744 222333 5578999999999999998544
No 493
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=22.70 E-value=1.2e+02 Score=31.09 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=37.6
Q ss_pred cCCCccccccccChhhHHHHHHh----CCcEeecCCcCcchhhHHHHHHHhcceeEecccCCccccccccccccccHHHH
Q 042970 356 SHPAVGGFLTHCGWNSSLEGISA----GVQMLTWPLFGDQFCNEKLIVEVLRIGVSVGVEVPLKFGEEEKIGVLVKKDDV 431 (489)
Q Consensus 356 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (489)
..+++ +|+=||=||++.|.+. ++|++.+ |.-+ +|..- .++.+++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~------LGFLt----------------~i~~~e~ 308 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMGS------LGFMT----------------PFHSEQY 308 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCCC------cceec----------------ccCHHHH
Confidence 34566 9999999999999774 5677766 2211 23321 3677888
Q ss_pred HHHHHHhccC
Q 042970 432 ETAINILMDD 441 (489)
Q Consensus 432 ~~ai~~il~~ 441 (489)
.++|.+++++
T Consensus 309 ~~~Le~il~G 318 (508)
T PLN02935 309 RDCLDAILKG 318 (508)
T ss_pred HHHHHHHHcC
Confidence 8888888864
No 494
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.63 E-value=99 Score=26.67 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCcchhhHHHHHHHhhhCCCceEEEEeeCCccc--C---CCCCCCCC------CC
Q 042970 19 GHLIPMFDMARLL-ANHRAIVTIVTTPVNAARLKTVLARAVQSGLQIRLVEIQFPWQE--A---GLPQGCEN------FD 86 (489)
Q Consensus 19 GHv~P~l~La~~L-~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~---~~~~~~~~------~~ 86 (489)
+.+.-.+..|+.| .+.|.+|.+.... +...+++. .++..+.++....+ . ........ ..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~--------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH--------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh--------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5677788899999 7889999887533 33333332 13455555433222 0 00000000 00
Q ss_pred CCCchhhHHHHHHHH-h----hchHHHHHHHhhc-CCCCcEEEECCCCcchHHHHHHcCCCcEEEecch
Q 042970 87 MLPSIDLASKFFNSH-S----MLQLPFENLFSEQ-SPKPCCIISDMGYPWTVDTAAKFNVPRIVFHGFS 149 (489)
Q Consensus 87 ~~~~~~~~~~~~~~~-~----~~~~~l~~ll~~~-~~~~D~VI~D~~~~~~~~~A~~lgIP~v~l~~~~ 149 (489)
.......+..++..- . ....++...+++. ..++|+||.+. .+..+|+++|+|++.+.++.
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 011112222222110 0 1223333333321 25899999995 35889999999999876644
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=22.45 E-value=2.1e+02 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=35.9
Q ss_pred CCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042970 1 MASEASEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVT 42 (489)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~ 42 (489)
|+.+.++.-|+|.-.++.|-..-.-.|++.|...|..+.++.
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 677777888888889999999999999999988888887764
No 496
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=22.44 E-value=3.9e+02 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.022 Sum_probs=24.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 9 HILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|.++++.++ |.+- ..+++.|.++|++|+++...
T Consensus 16 k~vlItGas-~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTGGN-TGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeCC
Confidence 555665443 5444 78899999999999888654
No 497
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.44 E-value=1.1e+02 Score=28.30 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCccccccccChhhHHHHHH-hCCcEeec
Q 042970 357 HPAVGGFLTHCGWNSSLEGIS-AGVQMLTW 385 (489)
Q Consensus 357 ~~~~~~~I~HgG~~s~~eal~-~GvP~l~~ 385 (489)
.+++ +|+=||=||++.|++ +++|++.+
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgi 68 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGF 68 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEE
Confidence 3455 999999999999977 57787777
No 498
>PRK11914 diacylglycerol kinase; Reviewed
Probab=22.42 E-value=2.3e+02 Score=26.92 Aligned_cols=82 Identities=6% Similarity=-0.092 Sum_probs=0.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEecCCchhhhhhhhchhhHHHHhcCCCeEEecccchHhhhcCCCcc
Q 042970 282 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVTRVGNKLEELEKWLVEENFEERIKGRGLLIRGWVPQVMILSHPAVG 361 (489)
Q Consensus 282 vVyvs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~ 361 (489)
++.++--|-.....+.+.++.+.|++.+..+.+......... .-+-........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~-----------------------~~~a~~~~~~~~d~- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDA-----------------------RHLVAAALAKGTDA- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHH-----------------------HHHHHHHHhcCCCE-
Q ss_pred ccccccChhhHHHHH----HhCCcEeecCCc
Q 042970 362 GFLTHCGWNSSLEGI----SAGVQMLTWPLF 388 (489)
Q Consensus 362 ~~I~HgG~~s~~eal----~~GvP~l~~P~~ 388 (489)
+|--||=||+.|++ ..++|+-++|..
T Consensus 68 -vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 68 -LVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred -EEEECCchHHHHHhHHhccCCCcEEEEeCC
No 499
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=22.42 E-value=1.4e+02 Score=28.68 Aligned_cols=37 Identities=3% Similarity=-0.149 Sum_probs=27.3
Q ss_pred cEEEEecCC---CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 8 FHILLLPFL---AQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 8 ~~vl~~~~p---~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
|||+|+--| -.-+..-.++|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 356666654 2234456789999999999999999766
No 500
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.40 E-value=2.3e+02 Score=21.60 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 042970 6 SEFHILLLPFLAQGHLIPMFDMARLLANHRAIVTIVTTP 44 (489)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~V~~~~~~ 44 (489)
++.||+++|..+.+--.=.-.+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 467899999887663333334445556679888776554
Done!