BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042971
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FBA|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine
pdb|4FBA|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine
pdb|4FBA|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine
pdb|4FBA|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine
pdb|4FBB|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine (amp-incubated)
pdb|4FBB|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine (amp-incubated)
pdb|4FBB|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine (amp-incubated)
pdb|4FBB|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
With Adenine (amp-incubated)
pdb|4FBC|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
With Amp
pdb|4FBC|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
With Amp
pdb|4FBC|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
With Amp
pdb|4FBC|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
With Amp
Length = 282
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 17 FEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKL 50
F ++PV+PPV+PNV +V A P S L
Sbjct: 45 FSHNRPVLPPVEPNVPPSRWFHVVLKASPTSAGL 78
>pdb|4FB9|A Chain A, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|B Chain B, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|C Chain C, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|D Chain D, Structure Of Mutant Rip From Barley Seeds
Length = 282
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 17 FEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKL 50
F ++PV+PPV+PNV +V A P S L
Sbjct: 45 FSHNRPVLPPVEPNVPPSRWFHVVLKASPTSAGL 78
>pdb|4FBH|A Chain A, Structure Of Rip From Barley Seeds
Length = 281
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 17 FEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKL 50
F ++PV+PPV+PNV +V A P S L
Sbjct: 44 FSHNRPVLPPVEPNVPPSRWFHVVLKASPTSAGL 77
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 6 KFDPVKSPMLFFE-KDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDW 64
KFD + + E + +IPP V+K +P S++L+ S RH + VD
Sbjct: 45 KFDLTGGNLKYIEGQSIGIIPPG-----------VDKNGKPESLRLYSIASTRHGDDVDD 93
Query: 65 DQGGSCQR 72
C R
Sbjct: 94 KTISLCVR 101
>pdb|2GIC|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-rna Complex
pdb|2GIC|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-rna Complex
pdb|2GIC|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-rna Complex
pdb|2GIC|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-rna Complex
pdb|2GIC|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-rna Complex
pdb|2WYY|A Chain A, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|C Chain C, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|D Chain D, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|H Chain H, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|F Chain F, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|I Chain I, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|J Chain J, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|K Chain K, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|L Chain L, Cryoem Model Of The Vesicular Stomatitis Virus
pdb|2WYY|M Chain M, Cryoem Model Of The Vesicular Stomatitis Virus
Length = 422
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 4 PAKFDPVKSPMLFFEKDKPVIPPVQPNVGL-DMIQYVEKTARPGSIKLFRTQS 55
PA DPV+ P +F K K + + L D+ YV + + G++ + S
Sbjct: 19 PANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNS 71
>pdb|3HHZ|K Chain K, Complex Of The Vesicular Stomatitis Virus Nucleocapsid
And The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHZ|L Chain L, Complex Of The Vesicular Stomatitis Virus Nucleocapsid
And The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHZ|M Chain M, Complex Of The Vesicular Stomatitis Virus Nucleocapsid
And The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHZ|N Chain N, Complex Of The Vesicular Stomatitis Virus Nucleocapsid
And The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHZ|O Chain O, Complex Of The Vesicular Stomatitis Virus Nucleocapsid
And The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3PTO|A Chain A, Crystal Structure Of An Empty Vesicular Stomatitis Virus
Nucleocapsid Protein Complex
pdb|3PTO|B Chain B, Crystal Structure Of An Empty Vesicular Stomatitis Virus
Nucleocapsid Protein Complex
pdb|3PTO|C Chain C, Crystal Structure Of An Empty Vesicular Stomatitis Virus
Nucleocapsid Protein Complex
pdb|3PTO|D Chain D, Crystal Structure Of An Empty Vesicular Stomatitis Virus
Nucleocapsid Protein Complex
pdb|3PTO|E Chain E, Crystal Structure Of An Empty Vesicular Stomatitis Virus
Nucleocapsid Protein Complex
pdb|3PTX|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polya Complex
pdb|3PTX|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polya Complex
pdb|3PTX|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polya Complex
pdb|3PTX|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polya Complex
pdb|3PTX|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polya Complex
pdb|3PU0|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyc Complex
pdb|3PU0|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyc Complex
pdb|3PU0|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyc Complex
pdb|3PU0|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyc Complex
pdb|3PU0|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyc Complex
pdb|3PU1|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyg Complex
pdb|3PU1|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyg Complex
pdb|3PU1|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyg Complex
pdb|3PU1|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyg Complex
pdb|3PU1|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyg Complex
pdb|3PU4|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyu Complex
pdb|3PU4|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyu Complex
pdb|3PU4|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyu Complex
pdb|3PU4|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyu Complex
pdb|3PU4|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid-Polyu Complex
Length = 421
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 4 PAKFDPVKSPMLFFEKDKPVIPPVQPNVGL-DMIQYVEKTARPGSIKLFRTQS 55
PA DPV+ P +F K K + + L D+ YV + + G++ + S
Sbjct: 18 PANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNS 70
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 58 HFEGVDWDQ 66
HF+GVDWDQ
Sbjct: 161 HFDGVDWDQ 169
>pdb|2QVJ|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|3HHW|K Chain K, Complex Of A Vesicular Stomatitis Virus Empty Capsid
With The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHW|L Chain L, Complex Of A Vesicular Stomatitis Virus Empty Capsid
With The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHW|M Chain M, Complex Of A Vesicular Stomatitis Virus Empty Capsid
With The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHW|N Chain N, Complex Of A Vesicular Stomatitis Virus Empty Capsid
With The Nucleocapsid-Binding Domain Of The
Phosphoprotein
pdb|3HHW|O Chain O, Complex Of A Vesicular Stomatitis Virus Empty Capsid
With The Nucleocapsid-Binding Domain Of The
Phosphoprotein
Length = 421
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 4 PAKFDPVKSPMLFFEKDKPVIPPVQPNVGL-DMIQYVEKTARPGSIKLFRTQS 55
PA DPV+ P +F K K + + L D+ YV + + G++ + S
Sbjct: 18 PANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNS 70
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 58 HFEGVDWDQGGSCQ 71
HF+GVDWDQ Q
Sbjct: 161 HFDGVDWDQSRQFQ 174
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 58 HFEGVDWDQGGSCQ 71
HF+GVDWDQ Q
Sbjct: 157 HFDGVDWDQSRQFQ 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,676,224
Number of Sequences: 62578
Number of extensions: 92829
Number of successful extensions: 191
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 12
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)