Query 042971
Match_columns 80
No_of_seqs 104 out of 567
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 99.9 7.6E-23 1.7E-27 152.6 7.3 76 1-79 216-303 (387)
2 PF13839 PC-Esterase: GDSL/SGN 98.7 2.3E-08 4.9E-13 68.7 5.4 47 25-71 125-179 (263)
3 PF06462 Hyd_WA: Propeller; I 73.3 4.2 9.2E-05 20.1 2.2 21 45-65 8-29 (32)
4 PF15590 Imm15: Immunity prote 47.9 19 0.00041 21.3 2.1 20 43-62 31-50 (69)
5 PF03199 GSH_synthase: Eukaryo 46.8 2.8 6.1E-05 26.4 -1.7 19 47-65 64-84 (105)
6 PF04895 DUF651: Archaeal prot 39.3 92 0.002 19.8 4.4 38 28-65 14-54 (110)
7 PF11623 DUF3252: Protein of u 36.7 5.9 0.00013 22.2 -1.2 9 58-66 35-43 (53)
8 PF14365 DUF4409: Domain of un 36.7 15 0.00032 23.3 0.5 16 63-78 56-72 (117)
9 PF00976 ACTH_domain: Corticot 33.9 25 0.00054 18.5 1.0 12 53-67 1-12 (39)
10 PF05224 NDT80_PhoG: NDT80 / P 31.8 24 0.00052 24.0 1.0 15 47-61 171-185 (186)
11 PF13304 AAA_21: AAA domain; P 31.6 64 0.0014 20.4 2.9 23 35-57 278-300 (303)
12 COG0180 TrpS Tryptophanyl-tRNA 29.8 32 0.00069 25.7 1.4 27 35-61 69-96 (314)
13 COG4443 Uncharacterized protei 23.3 31 0.00067 20.3 0.2 15 48-62 38-52 (72)
No 1
>PLN02629 powdery mildew resistance 5
Probab=99.88 E-value=7.6e-23 Score=152.61 Aligned_cols=76 Identities=20% Similarity=0.473 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCCCceEeccCeeccCCCChHHHhH-----HHHHHHHh-CCCCceEEEEeccCCcccCCCCCCCC-----C
Q 042971 1 WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLD-----MIQYVEKT-ARPGSIKLFRTQSPRHFEGVDWDQGG-----S 69 (80)
Q Consensus 1 WW~~~~~~~~~~~~~y~~~g~~v~~~~~~~~a~r-----~~~wv~~~-~~~kt~vffrT~SP~Hfe~g~W~~Gg-----~ 69 (80)
||++.+. +++++|++.|..++++|++.+||| |++||+.+ ++.+++|||||+||+|||+|+||+|| +
T Consensus 216 Ww~~~~~---~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~ 292 (387)
T PLN02629 216 WWSHQGS---LQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKN 292 (387)
T ss_pred ccCCCCe---eEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCC
Confidence 8999887 889999999999999999999998 88999987 78899999999999999999999875 5
Q ss_pred cc-ccccCCCC
Q 042971 70 CQ-RLQPLLPE 79 (80)
Q Consensus 70 C~-~T~P~~~~ 79 (80)
|+ +|+|+.++
T Consensus 293 C~~et~P~~~~ 303 (387)
T PLN02629 293 CYGETTPMSGM 303 (387)
T ss_pred CccCCccCcCc
Confidence 87 59998753
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=98.73 E-value=2.3e-08 Score=68.72 Aligned_cols=47 Identities=36% Similarity=0.768 Sum_probs=39.6
Q ss_pred CCCChHHHhH-----HHHHHHHh-CCCC--ceEEEEeccCCcccCCCCCCCCCcc
Q 042971 25 PPVQPNVGLD-----MIQYVEKT-ARPG--SIKLFRTQSPRHFEGVDWDQGGSCQ 71 (80)
Q Consensus 25 ~~~~~~~a~r-----~~~wv~~~-~~~k--t~vffrT~SP~Hfe~g~W~~Gg~C~ 71 (80)
.++....+|+ ++++|... ++.+ ++||||+++|.||++++|++||.|+
T Consensus 125 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~ 179 (263)
T PF13839_consen 125 KEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCN 179 (263)
T ss_pred cCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcC
Confidence 5667778887 67777765 5555 8999999999999999999999998
No 3
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=73.29 E-value=4.2 Score=20.10 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=17.2
Q ss_pred CCceEEEEe-ccCCcccCCCCC
Q 042971 45 PGSIKLFRT-QSPRHFEGVDWD 65 (80)
Q Consensus 45 ~kt~vffrT-~SP~Hfe~g~W~ 65 (80)
..+.||+|+ +||+.-++-.|.
T Consensus 8 ~~G~v~~R~Gis~~~P~G~~W~ 29 (32)
T PF06462_consen 8 SDGSVYFRTGISPSNPEGTSWE 29 (32)
T ss_pred CCCCEEEECcCCCCCCCCCCcE
Confidence 457899997 999988888784
No 4
>PF15590 Imm15: Immunity protein 15
Probab=47.90 E-value=19 Score=21.25 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=17.9
Q ss_pred CCCCceEEEEeccCCcccCC
Q 042971 43 ARPGSIKLFRTQSPRHFEGV 62 (80)
Q Consensus 43 ~~~kt~vffrT~SP~Hfe~g 62 (80)
||.+.+--..++.++|+.||
T Consensus 31 DP~D~r~W~~~~~~s~~hGG 50 (69)
T PF15590_consen 31 DPRDGRYWEKSYPESHMHGG 50 (69)
T ss_pred CCCCCceeEEecCcccccCC
Confidence 78888999999999999975
No 5
>PF03199 GSH_synthase: Eukaryotic glutathione synthase; InterPro: IPR004887 This entry represents the substrate-binding domain of glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. The substrate-binding domain has a 3-layer alpha/beta/alpha structure [].; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=46.76 E-value=2.8 Score=26.39 Aligned_cols=19 Identities=26% Similarity=0.761 Sum_probs=12.7
Q ss_pred ceEEEE-eccCCccc-CCCCC
Q 042971 47 SIKLFR-TQSPRHFE-GVDWD 65 (80)
Q Consensus 47 t~vffr-T~SP~Hfe-~g~W~ 65 (80)
.+|.|| +|+|+||- ..+|+
T Consensus 64 sVVYfRaGY~P~dy~se~~W~ 84 (105)
T PF03199_consen 64 SVVYFRAGYTPDDYPSEKEWE 84 (105)
T ss_dssp EEEEECS-SSGGG-SSHHHHH
T ss_pred EEEEEecCcChhhCCcHHHHH
Confidence 478898 59999993 45565
No 6
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=39.32 E-value=92 Score=19.79 Aligned_cols=38 Identities=13% Similarity=0.384 Sum_probs=28.2
Q ss_pred ChHHHhH--HHHHHHHhCCCCceEEEEeccCCccc-CCCCC
Q 042971 28 QPNVGLD--MIQYVEKTARPGSIKLFRTQSPRHFE-GVDWD 65 (80)
Q Consensus 28 ~~~~a~r--~~~wv~~~~~~kt~vffrT~SP~Hfe-~g~W~ 65 (80)
+-++|-| ++.++.+.....+.++||-++|.=+- -|-|.
T Consensus 14 G~YYAaRLaVlE~L~~~~RQA~viv~REI~p~Y~~PlGvW~ 54 (110)
T PF04895_consen 14 GAYYAARLAVLEYLRRRRRQAGVIVLREITPEYYAPLGVWQ 54 (110)
T ss_pred hHHHHHHHHHHHHHHHcCccceEEEEEEecCCceeeeeeeh
Confidence 4556666 78888776666678999999998755 36675
No 7
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=36.71 E-value=5.9 Score=22.21 Aligned_cols=9 Identities=56% Similarity=1.280 Sum_probs=7.2
Q ss_pred cccCCCCCC
Q 042971 58 HFEGVDWDQ 66 (80)
Q Consensus 58 Hfe~g~W~~ 66 (80)
=||+|.|++
T Consensus 35 LFEGGnWdK 43 (53)
T PF11623_consen 35 LFEGGNWDK 43 (53)
T ss_dssp EEEETTEEE
T ss_pred EecCCCceE
Confidence 478999975
No 8
>PF14365 DUF4409: Domain of unknown function (DUF4409)
Probab=36.68 E-value=15 Score=23.34 Aligned_cols=16 Identities=38% Similarity=0.806 Sum_probs=12.9
Q ss_pred CCCCCCCccc-cccCCC
Q 042971 63 DWDQGGSCQR-LQPLLP 78 (80)
Q Consensus 63 ~W~~Gg~C~~-T~P~~~ 78 (80)
-|..+|.|.. |.|++.
T Consensus 56 ~w~~~g~CP~GTVPIrR 72 (117)
T PF14365_consen 56 LWHQNGSCPEGTVPIRR 72 (117)
T ss_pred hhccccCCcCCceeeec
Confidence 5777789995 999875
No 9
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=33.86 E-value=25 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=8.9
Q ss_pred eccCCcccCCCCCCC
Q 042971 53 TQSPRHFEGVDWDQG 67 (80)
Q Consensus 53 T~SP~Hfe~g~W~~G 67 (80)
+||-.||+ |++.
T Consensus 1 Sy~mehfr---wgkp 12 (39)
T PF00976_consen 1 SYSMEHFR---WGKP 12 (39)
T ss_pred Ccccccee---ccCC
Confidence 57889998 6653
No 10
>PF05224 NDT80_PhoG: NDT80 / PhoG like DNA-binding family; InterPro: IPR024061 The NDT80 DNA-binding domain is found in the following proteins, which might all be involved in sensing nutritional status []: Yeast meiosis-specific transcription factor NDT80, the key transcription factor that ultimately allows the continuation of meiosis after the successful completion of recombination. Emericella nidulans phoG (xprG), a transcriptional activator involved in the response to nutrient limitation. Emericella nidulans putative uncharacterised protein AN6015.2. Neurospora crassa transcription factor vib-1, involved in the control of heterokaryon incompatibility. Neurospora crassa related to acid phosphatase NCU04729. Neurospora crassa related to meiosis-specific protein NDT80 NCU09915. The proteolytically resistant core NDT80 DNA-binding domain reveals a central beta-sandwich characteristic of an s-type Ig fold. The beta-sandwich contains a three-stranded sheet composed of strands a, b and e, packed against a four-stranded sheet composed of strands c', c, f and g. Each sheet of the beta-sandwich contains an additional beta-strand, as well as a variety of peripheral secondary structure elements. The NDT80 DNA-binding domain contains an N-terminal extension, which consists of a beta-hairpin and a loop []. ; GO: 0003677 DNA binding; PDB: 2EVJ_A 2EUW_A 1M6U_A 2EVF_A 1M7U_B 1MN4_A 2EVG_A 2EUV_A 2EVI_A 2EVH_A ....
Probab=31.85 E-value=24 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=10.2
Q ss_pred ceEEEEeccCCcccC
Q 042971 47 SIKLFRTQSPRHFEG 61 (80)
Q Consensus 47 t~vffrT~SP~Hfe~ 61 (80)
.-+++|+=||+||.+
T Consensus 171 ~piIVRGRSP~~Y~~ 185 (186)
T PF05224_consen 171 PPIIVRGRSPGHYQS 185 (186)
T ss_dssp S-EEEE-S-GGGSGG
T ss_pred CCEEEECCCcccccC
Confidence 358999999999975
No 11
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=31.61 E-value=64 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCCceEEEEeccCC
Q 042971 35 MIQYVEKTARPGSIKLFRTQSPR 57 (80)
Q Consensus 35 ~~~wv~~~~~~kt~vffrT~SP~ 57 (80)
.++.+......+.|||+.|-||.
T Consensus 278 l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 278 LIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp HHHHHHHTGGGSSEEEEEES-GG
T ss_pred HHHHHHhhCccCCEEEEeCccch
Confidence 55666443234689999999984
No 12
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.77 E-value=32 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHh-CCCCceEEEEeccCCcccC
Q 042971 35 MIQYVEKT-ARPGSIKLFRTQSPRHFEG 61 (80)
Q Consensus 35 ~~~wv~~~-~~~kt~vffrT~SP~Hfe~ 61 (80)
++.||..- ||.|+.+|+.|--|.|.+-
T Consensus 69 ~a~~LA~GiDP~k~~if~QS~v~e~~eL 96 (314)
T COG0180 69 AADYLAVGLDPEKSTIFLQSEVPEHAEL 96 (314)
T ss_pred HHHHHHhccCccccEEEEccCchHHHHH
Confidence 67787765 8999999999999999884
No 13
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=31 Score=20.34 Aligned_cols=15 Identities=27% Similarity=0.058 Sum_probs=11.2
Q ss_pred eEEEEeccCCcccCC
Q 042971 48 IKLFRTQSPRHFEGV 62 (80)
Q Consensus 48 ~vffrT~SP~Hfe~g 62 (80)
.-=+|+.||+|-.=|
T Consensus 38 KyDiR~Wspdh~KMG 52 (72)
T COG4443 38 KYDIRAWSPDHSKMG 52 (72)
T ss_pred cCcccccCcchhhhc
Confidence 345799999997643
Done!