Query 042971
Match_columns 80
No_of_seqs 104 out of 567
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jz2_A SSL0352 protein; SH3-li 39.4 5 0.00017 22.6 -0.4 9 58-66 35-43 (66)
2 1mnn_A NDT80 protein; IG fold, 21.4 29 0.00098 25.2 0.9 15 48-62 320-334 (340)
3 4g06_A Uncharacterized protein 19.8 40 0.0014 19.5 1.1 15 47-61 44-58 (79)
4 2l3a_A Uncharacterized protein 15.5 58 0.002 19.0 1.1 15 47-61 39-53 (82)
5 3pm7_A Uncharacterized protein 15.0 61 0.0021 18.8 1.1 13 48-60 38-50 (80)
6 2lul_A Tyrosine-protein kinase 14.6 2.3E+02 0.0078 17.3 4.8 28 35-64 112-140 (164)
7 3brc_A Conserved protein of un 14.2 81 0.0028 20.4 1.6 16 46-61 118-133 (156)
8 3a04_A Tryptophanyl-tRNA synth 14.2 93 0.0032 22.3 2.1 35 26-60 118-160 (372)
9 2hgs_A Protein (glutathione sy 12.2 28 0.00097 26.2 -1.2 19 47-65 262-281 (474)
10 1eaq_A RUNT-related transcript 12.1 96 0.0033 19.6 1.4 19 49-76 24-42 (140)
No 1
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=39.36 E-value=5 Score=22.59 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=7.4
Q ss_pred cccCCCCCC
Q 042971 58 HFEGVDWDQ 66 (80)
Q Consensus 58 Hfe~g~W~~ 66 (80)
=||||.|++
T Consensus 35 LFEGGnWDK 43 (66)
T 2jz2_A 35 LFENGNWDK 43 (66)
T ss_dssp EEESSSCEE
T ss_pred EecCCCcee
Confidence 479999986
No 2
>1mnn_A NDT80 protein; IG fold, protein_DNA complex, transcription-DNA complex; 1.40A {Saccharomyces cerevisiae} SCOP: b.2.5.7 PDB: 2evg_A 2euv_A 2euw_A 2etw_A 2eux_A 2evf_A 2euz_A 2evh_A 2evi_A 2evj_A 1mn4_A 1m6u_A 1m7u_A
Probab=21.42 E-value=29 Score=25.16 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.3
Q ss_pred eEEEEeccCCcccCC
Q 042971 48 IKLFRTQSPRHFEGV 62 (80)
Q Consensus 48 ~vffrT~SP~Hfe~g 62 (80)
-+++|+=||+||.++
T Consensus 320 P~IVRGRSP~nY~s~ 334 (340)
T 1mnn_A 320 PLIIRGRSPSNYASS 334 (340)
T ss_dssp CEEEECSCGGGSGGG
T ss_pred CEEEeCCCccccccc
Confidence 589999999999874
No 3
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=19.81 E-value=40 Score=19.54 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=11.2
Q ss_pred ceEEEEeccCCcccC
Q 042971 47 SIKLFRTQSPRHFEG 61 (80)
Q Consensus 47 t~vffrT~SP~Hfe~ 61 (80)
..-=+|+.||+|-.=
T Consensus 44 pKyDIR~W~pdh~kM 58 (79)
T 4g06_A 44 AKFDIRAWSPDHTKM 58 (79)
T ss_dssp CEEEEEEECTTSSCB
T ss_pred CCccccccCcccccc
Confidence 345589999999653
No 4
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=15.51 E-value=58 Score=18.96 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=11.5
Q ss_pred ceEEEEeccCCcccC
Q 042971 47 SIKLFRTQSPRHFEG 61 (80)
Q Consensus 47 t~vffrT~SP~Hfe~ 61 (80)
...=+|+.||+|-.=
T Consensus 39 pKyDIR~Wspdh~kM 53 (82)
T 2l3a_A 39 AKFDIRAWSPDHTKM 53 (82)
T ss_dssp EEEEEEEECSTTCCC
T ss_pred CCccccccCcchhhc
Confidence 345589999999764
No 5
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=15.00 E-value=61 Score=18.78 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=10.3
Q ss_pred eEEEEeccCCccc
Q 042971 48 IKLFRTQSPRHFE 60 (80)
Q Consensus 48 ~vffrT~SP~Hfe 60 (80)
.-=+|+.||+|-.
T Consensus 38 KyDIR~W~pdh~k 50 (80)
T 3pm7_A 38 KFDLREWAPDHEK 50 (80)
T ss_dssp EEEEEEECTTSSS
T ss_pred CccccccCcchhh
Confidence 4558999999965
No 6
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=14.59 E-value=2.3e+02 Score=17.26 Aligned_cols=28 Identities=4% Similarity=0.254 Sum_probs=17.8
Q ss_pred HHHHHHHh-CCCCceEEEEeccCCcccCCCC
Q 042971 35 MIQYVEKT-ARPGSIKLFRTQSPRHFEGVDW 64 (80)
Q Consensus 35 ~~~wv~~~-~~~kt~vffrT~SP~Hfe~g~W 64 (80)
|++.|.+. ..+.. ....|=|.+|.+|-|
T Consensus 112 Wi~aL~~~i~~n~~--~~~~yHpg~~~~~~w 140 (164)
T 2lul_A 112 WVKKLKEEIKNNNN--IMIKYHPKFWTDGSY 140 (164)
T ss_dssp HHHHHHHHHTTCSC--CCSEECCSCCCTTCC
T ss_pred HHHHHHHHHHHChh--hhhhcCCCcccCCeE
Confidence 55555443 33322 235799999999999
No 7
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=14.23 E-value=81 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=12.5
Q ss_pred CceEEEEeccCCcccC
Q 042971 46 GSIKLFRTQSPRHFEG 61 (80)
Q Consensus 46 kt~vffrT~SP~Hfe~ 61 (80)
|++++=.++||+|--+
T Consensus 118 kGRiLtas~SPs~~iH 133 (156)
T 3brc_A 118 RGRLLSAAMSPPHVIH 133 (156)
T ss_dssp TSCEEEEEEECCTTTS
T ss_pred CCcEEeeccCchhhhh
Confidence 5667777999999765
No 8
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=14.21 E-value=93 Score=22.30 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCChHHHhH------HHHHHHHh-CCCCceEEEEec-cCCccc
Q 042971 26 PVQPNVGLD------MIQYVEKT-ARPGSIKLFRTQ-SPRHFE 60 (80)
Q Consensus 26 ~~~~~~a~r------~~~wv~~~-~~~kt~vffrT~-SP~Hfe 60 (80)
.....+++| ++.|+..- ||.|+.+|+.|- .+.|++
T Consensus 118 ~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~ 160 (372)
T 3a04_A 118 RIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFR 160 (372)
T ss_dssp CCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHH
Confidence 445555555 56777764 999998998873 555654
No 9
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=12.20 E-value=28 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=14.0
Q ss_pred ceEEEE-eccCCcccCCCCC
Q 042971 47 SIKLFR-TQSPRHFEGVDWD 65 (80)
Q Consensus 47 t~vffr-T~SP~Hfe~g~W~ 65 (80)
.+|.|| +|+|+||...+|+
T Consensus 262 aVVYfRaGY~P~dYse~~W~ 281 (474)
T 2hgs_A 262 AVVYFRDGYMPRQYSLQNWE 281 (474)
T ss_dssp EEEEESSCSSGGGCCHHHHH
T ss_pred EEEEecCCCChhhcchHHHH
Confidence 367888 6999999444575
No 10
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=12.10 E-value=96 Score=19.64 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=14.0
Q ss_pred EEEEeccCCcccCCCCCCCCCccccccC
Q 042971 49 KLFRTQSPRHFEGVDWDQGGSCQRLQPL 76 (80)
Q Consensus 49 vffrT~SP~Hfe~g~W~~Gg~C~~T~P~ 76 (80)
-|+-|.=|.|++ |+++.|.
T Consensus 24 ~~~cs~LP~HWR---------sNKtLP~ 42 (140)
T 1eaq_A 24 NFLSSVLPTHWR---------SNKTLPI 42 (140)
T ss_dssp TEEECCCCSEEE---------TTCCCSS
T ss_pred CEEEccCcchhc---------cCCCCCC
Confidence 477888899988 6666663
Done!