Query 042971
Match_columns 80
No_of_seqs 104 out of 567
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hgsa1 c.30.1.4 (A:202-303) E 61.3 0.45 3.2E-05 27.6 -1.2 19 47-65 61-80 (102)
2 d1m0wa1 c.30.1.4 (A:216-323) E 42.2 5.1 0.00037 23.0 1.4 19 47-65 65-85 (108)
3 d1mnna_ b.2.5.7 (A:) DNA-bindi 24.2 11 0.00081 25.1 0.9 15 47-61 287-301 (303)
4 d3d4ub2 g.9.1.3 (B:38-74) Carb 15.3 14 0.00099 17.0 -0.2 14 65-78 5-19 (37)
5 d1eaqa_ b.2.5.6 (A:) Acute mye 14.1 36 0.0027 19.6 1.4 19 49-76 20-38 (124)
6 d1e69a_ c.37.1.12 (A:) Smc hea 12.3 1.3E+02 0.0091 18.0 3.9 25 35-60 262-286 (308)
7 d1h8ca_ d.15.1.2 (A:) Fas-asso 11.6 62 0.0045 16.4 1.9 51 10-60 5-57 (82)
8 d2heyr1 g.24.1.1 (R:83-142) Tu 10.7 34 0.0025 17.2 0.5 11 53-63 45-55 (60)
9 d2gy9b1 c.23.15.1 (B:8-225) Ri 10.6 78 0.0057 19.4 2.4 47 8-54 16-64 (218)
10 d1jnia_ a.138.1.3 (A:) Peripla 10.4 38 0.0028 17.7 0.6 10 53-62 38-47 (68)
No 1
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase, substrate-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.33 E-value=0.45 Score=27.65 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=15.3
Q ss_pred ceEEEE-eccCCcccCCCCC
Q 042971 47 SIKLFR-TQSPRHFEGVDWD 65 (80)
Q Consensus 47 t~vffr-T~SP~Hfe~g~W~ 65 (80)
.+|.|| +|+|+||...+|.
T Consensus 61 avvYfRaGY~P~dY~~~~W~ 80 (102)
T d2hgsa1 61 AVVYFRDGYMPRQYSLQNWE 80 (102)
T ss_dssp EEEEESSCSSGGGCCHHHHH
T ss_pred EEEEEecCcCcccCChhhHH
Confidence 467888 7999999767785
No 2
>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.22 E-value=5.1 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.642 Sum_probs=14.1
Q ss_pred ceEEEE-eccCCcccC-CCCC
Q 042971 47 SIKLFR-TQSPRHFEG-VDWD 65 (80)
Q Consensus 47 t~vffr-T~SP~Hfe~-g~W~ 65 (80)
.+|.|| +|+|+||.+ .+|.
T Consensus 65 avVYfRaGY~P~dYps~~~W~ 85 (108)
T d1m0wa1 65 AVVYYRTGYTTTDYTSEKDWE 85 (108)
T ss_dssp EEEEEESCSSGGGCCSHHHHH
T ss_pred EEEEEcCCcChhhCCCHHHHH
Confidence 367888 799999964 4564
No 3
>d1mnna_ b.2.5.7 (A:) DNA-binding domain from NDT80 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.16 E-value=11 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=13.2
Q ss_pred ceEEEEeccCCcccC
Q 042971 47 SIKLFRTQSPRHFEG 61 (80)
Q Consensus 47 t~vffrT~SP~Hfe~ 61 (80)
.-+++|+=||+||.+
T Consensus 287 ~PiIVRGRSP~~Y~s 301 (303)
T d1mnna_ 287 PPLIIRGRSPSNYAS 301 (303)
T ss_dssp SCEEEECSCGGGSGG
T ss_pred CCEEEECCCcccccc
Confidence 468999999999986
No 4
>d3d4ub2 g.9.1.3 (B:38-74) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=15.29 E-value=14 Score=17.05 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.8
Q ss_pred CCCCCcc-ccccCCC
Q 042971 65 DQGGSCQ-RLQPLLP 78 (80)
Q Consensus 65 ~~Gg~C~-~T~P~~~ 78 (80)
++||-|+ +-+|.++
T Consensus 5 ~kggec~p~~~~c~e 19 (37)
T d3d4ub2 5 GKGGECNPLDRQCKE 19 (37)
T ss_dssp GGTCEEEETTSCCCB
T ss_pred CCCCccCcccchhhh
Confidence 4678887 4566543
No 5
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.12 E-value=36 Score=19.64 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=14.5
Q ss_pred EEEEeccCCcccCCCCCCCCCccccccC
Q 042971 49 KLFRTQSPRHFEGVDWDQGGSCQRLQPL 76 (80)
Q Consensus 49 vffrT~SP~Hfe~g~W~~Gg~C~~T~P~ 76 (80)
-|+-|.=|+|++ |++|.|.
T Consensus 20 ~~lCs~LP~HWR---------sNKtLp~ 38 (124)
T d1eaqa_ 20 NFLSSVLPTHWR---------SNKTLPI 38 (124)
T ss_dssp TEEECCCCSEEE---------TTCCCSS
T ss_pred CEEeecCcchhc---------cCCccCc
Confidence 477888899988 7777763
No 6
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.28 E-value=1.3e+02 Score=17.96 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCceEEEEeccCCccc
Q 042971 35 MIQYVEKTARPGSIKLFRTQSPRHFE 60 (80)
Q Consensus 35 ~~~wv~~~~~~kt~vffrT~SP~Hfe 60 (80)
+++.+... ..++|||+.|.||.=.+
T Consensus 262 l~~~l~~~-~~~~QviitTHsp~~~~ 286 (308)
T d1e69a_ 262 FKRLLKEN-SKHTQFIVITHNKIVME 286 (308)
T ss_dssp HHHHHHHH-TTTSEEEEECCCTTGGG
T ss_pred HHHHHHHh-ccCCEEEEEECCHHHHH
Confidence 66666544 23689999999997443
No 7
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.59 E-value=62 Score=16.38 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=32.1
Q ss_pred CCCCceEeccCeeccCCCChHHHhH-HHHHHHHhC-CCCceEEEEeccCCccc
Q 042971 10 VKSPMLFFEKDKPVIPPVQPNVGLD-MIQYVEKTA-RPGSIKLFRTQSPRHFE 60 (80)
Q Consensus 10 ~~~~~~y~~~g~~v~~~~~~~~a~r-~~~wv~~~~-~~kt~vffrT~SP~Hfe 60 (80)
+.+-.+-+-+|+.+...+.....++ +..||+... ....-.++.+|...-|.
T Consensus 5 ~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~~~~~~~~~l~~~~Pr~~l~ 57 (82)
T d1h8ca_ 5 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVT 57 (82)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHTCCSSSEEEEETTTTEETT
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhcCCCCCceEEEecCcccccc
Confidence 3455566678887766666666677 788888762 22345566666544454
No 8
>d2heyr1 g.24.1.1 (R:83-142) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.74 E-value=34 Score=17.16 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=7.4
Q ss_pred eccCCcccCCC
Q 042971 53 TQSPRHFEGVD 63 (80)
Q Consensus 53 T~SP~Hfe~g~ 63 (80)
---|-||+.|+
T Consensus 45 pcppghfspg~ 55 (60)
T d2heyr1 45 PCPPGHFSPGD 55 (60)
T ss_dssp ECCTTEECCST
T ss_pred cCCCCccCCCc
Confidence 34577888764
No 9
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=10.64 E-value=78 Score=19.36 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCCCceEec-cCeeccCCCChHHHhH-HHHHHHHhCCCCceEEEEec
Q 042971 8 DPVKSPMLFFE-KDKPVIPPVQPNVGLD-MIQYVEKTARPGSIKLFRTQ 54 (80)
Q Consensus 8 ~~~~~~~~y~~-~g~~v~~~~~~~~a~r-~~~wv~~~~~~kt~vffrT~ 54 (80)
+|.+.+-+|-. +|-.+.+-......++ +++.|......++.++|.+-
T Consensus 16 np~m~~yIyg~r~gi~IIdL~~T~~~L~~A~~~l~~~~~~~g~iLfVgT 64 (218)
T d2gy9b1 16 NPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGT 64 (218)
T ss_dssp CGGGGGGBCCCBTTBCCBCHHHHHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCCcccceecccCCcEEEcHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 46677777643 3333332212223333 66666655344455555543
No 10
>d1jnia_ a.138.1.3 (A:) Periplasmic nitrate reductase subunit NapB {Haemophilus influenzae [TaxId: 727]}
Probab=10.38 E-value=38 Score=17.67 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=8.1
Q ss_pred eccCCcccCC
Q 042971 53 TQSPRHFEGV 62 (80)
Q Consensus 53 T~SP~Hfe~g 62 (80)
.+|++||.+.
T Consensus 38 ~is~tH~~dr 47 (68)
T d1jnia_ 38 RISPTHFMDR 47 (68)
T ss_dssp CCCGGGTCCT
T ss_pred cCCccceEcc
Confidence 5799999864
Done!