Query 042976
Match_columns 163
No_of_seqs 165 out of 1367
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 99.9 7.2E-23 1.6E-27 156.9 11.7 95 10-109 38-145 (146)
2 PRK11597 heat shock chaperone 99.9 1.6E-22 3.5E-27 155.2 12.2 97 10-113 30-138 (142)
3 PRK10743 heat shock protein Ib 99.9 8.5E-23 1.8E-27 155.9 10.3 90 13-109 35-136 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 8.9E-22 1.9E-26 139.8 10.3 81 14-98 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 5.9E-21 1.3E-25 136.8 12.1 89 16-109 1-101 (102)
6 cd06479 ACD_HspB7_like Alpha c 99.9 4.6E-21 1E-25 134.3 9.8 78 16-98 2-81 (81)
7 cd06471 ACD_LpsHSP_like Group 99.9 6.5E-21 1.4E-25 135.2 10.4 80 13-98 1-93 (93)
8 cd06497 ACD_alphaA-crystallin_ 99.8 7.3E-21 1.6E-25 134.4 10.2 78 16-98 4-86 (86)
9 cd06498 ACD_alphaB-crystallin_ 99.8 1.4E-20 3E-25 132.5 10.1 78 17-99 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.9E-20 4.2E-25 131.3 10.4 78 16-98 1-83 (83)
11 cd06475 ACD_HspB1_like Alpha c 99.8 3.9E-20 8.5E-25 130.7 10.2 78 15-97 3-85 (86)
12 cd06476 ACD_HspB2_like Alpha c 99.8 5E-20 1.1E-24 129.5 10.0 76 18-98 3-83 (83)
13 cd06470 ACD_IbpA-B_like Alpha- 99.8 7.6E-20 1.7E-24 129.7 10.6 79 13-98 1-90 (90)
14 cd06481 ACD_HspB9_like Alpha c 99.8 2.7E-19 5.9E-24 126.6 9.3 74 20-98 5-87 (87)
15 cd06526 metazoan_ACD Alpha-cry 99.8 4.4E-19 9.5E-24 123.8 9.2 72 22-98 7-83 (83)
16 cd06477 ACD_HspB3_Like Alpha c 99.8 8.7E-19 1.9E-23 123.3 9.8 75 18-97 3-82 (83)
17 cd06464 ACD_sHsps-like Alpha-c 99.8 1.8E-18 3.9E-23 119.2 10.3 78 16-98 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.8 2.6E-18 5.6E-23 121.9 9.5 74 20-98 6-87 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 2.9E-17 6.2E-22 117.5 9.4 81 13-98 6-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.7 1.9E-16 4.1E-21 125.2 11.2 93 14-111 64-163 (173)
21 KOG0710 Molecular chaperone (s 99.6 6E-15 1.3E-19 118.6 6.9 102 6-111 78-194 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 1.2E-13 2.7E-18 91.4 9.9 77 17-98 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.8E-11 3.9E-16 83.4 9.3 71 17-101 1-71 (78)
24 cd06463 p23_like Proteins cont 99.0 2.8E-09 6E-14 72.1 9.8 76 17-101 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.9 1.3E-08 2.9E-13 80.6 9.8 79 12-102 91-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.9E-08 6.2E-13 68.2 8.4 77 16-101 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.1E-06 2.5E-11 58.7 11.6 77 13-98 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 1.8E-05 3.9E-10 57.4 10.4 78 13-100 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.0 3E-05 6.5E-10 65.5 9.0 65 21-97 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 7.3E-05 1.6E-09 51.7 9.3 77 16-101 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.9 0.0001 2.2E-09 50.6 8.9 75 15-101 1-77 (85)
32 cd06488 p23_melusin_like p23_l 97.9 0.00024 5.2E-09 49.7 10.1 79 14-101 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 97.7 0.00061 1.3E-08 47.6 10.3 79 14-101 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00054 1.2E-08 47.6 9.7 75 15-101 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.3 0.0048 1E-07 44.1 10.1 76 13-101 6-83 (93)
36 cd00237 p23 p23 binds heat sho 97.3 0.007 1.5E-07 44.2 10.7 78 13-101 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.8 0.0086 1.9E-07 51.9 9.2 80 13-101 157-236 (356)
38 cd06490 p23_NCB5OR p23_like do 96.4 0.094 2E-06 36.6 10.6 76 15-101 1-80 (87)
39 KOG1309 Suppressor of G2 allel 96.4 0.016 3.5E-07 46.4 7.1 80 12-100 3-82 (196)
40 cd06492 p23_mNUDC_like p23-lik 95.9 0.16 3.4E-06 35.6 9.5 74 15-100 1-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.6 0.23 4.9E-06 36.1 9.7 79 13-100 5-86 (102)
42 KOG1667 Zn2+-binding protein M 83.2 7.3 0.00016 33.2 7.7 87 14-108 216-302 (320)
43 KOG3158 HSP90 co-chaperone p23 75.9 15 0.00032 29.5 6.9 78 11-99 6-83 (180)
44 cd06482 ACD_HspB10 Alpha cryst 74.6 7.9 0.00017 27.1 4.6 34 66-100 8-41 (87)
45 KOG2265 Nuclear distribution p 72.8 35 0.00075 27.4 8.3 78 12-101 18-97 (179)
46 cd06478 ACD_HspB4-5-6 Alpha-cr 66.5 15 0.00033 25.1 4.6 32 66-98 7-38 (83)
47 PRK05518 rpl6p 50S ribosomal p 64.7 33 0.00072 27.3 6.8 51 33-97 7-57 (180)
48 cd06477 ACD_HspB3_Like Alpha c 64.3 14 0.00031 25.6 4.1 30 27-57 51-82 (83)
49 cd06470 ACD_IbpA-B_like Alpha- 63.5 19 0.00042 24.8 4.8 35 66-101 11-45 (90)
50 cd06479 ACD_HspB7_like Alpha c 63.4 19 0.00042 24.7 4.6 33 66-99 8-40 (81)
51 COG5091 SGT1 Suppressor of G2 63.0 4.8 0.0001 34.7 1.8 79 15-101 179-257 (368)
52 cd06526 metazoan_ACD Alpha-cry 62.8 18 0.00039 24.4 4.4 34 66-100 7-40 (83)
53 TIGR03653 arch_L6P archaeal ri 62.6 41 0.0009 26.4 7.0 45 39-97 7-51 (170)
54 PF14913 DPCD: DPCD protein fa 61.8 76 0.0017 25.8 8.3 68 20-99 94-169 (194)
55 PRK10743 heat shock protein Ib 60.4 23 0.0005 26.8 5.0 32 68-100 47-78 (137)
56 TIGR03654 L6_bact ribosomal pr 59.2 47 0.001 26.1 6.7 44 39-97 11-54 (175)
57 PTZ00027 60S ribosomal protein 56.4 45 0.00097 26.8 6.2 54 32-97 6-59 (190)
58 PRK05498 rplF 50S ribosomal pr 56.2 50 0.0011 26.0 6.4 44 39-97 12-55 (178)
59 cd06476 ACD_HspB2_like Alpha c 56.1 24 0.00052 24.3 4.1 33 66-99 7-39 (83)
60 PF04972 BON: BON domain; Int 55.8 26 0.00056 22.1 4.0 26 35-61 12-37 (64)
61 PF00011 HSP20: Hsp20/alpha cr 55.7 36 0.00078 23.4 5.1 33 66-99 7-39 (102)
62 KOG3591 Alpha crystallins [Pos 55.4 21 0.00045 28.3 4.1 42 31-75 120-162 (173)
63 PF13349 DUF4097: Domain of un 55.4 83 0.0018 23.3 9.0 54 41-95 86-147 (166)
64 PF11033 ComJ: Competence prot 55.1 67 0.0014 24.3 6.6 75 12-99 19-97 (125)
65 cd06497 ACD_alphaA-crystallin_ 54.6 33 0.00072 23.6 4.6 32 66-98 10-41 (86)
66 cd06471 ACD_LpsHSP_like Group 53.7 19 0.00041 24.7 3.3 25 31-56 67-91 (93)
67 cd06480 ACD_HspB8_like Alpha-c 51.7 29 0.00064 24.5 4.0 31 27-57 59-90 (91)
68 cd06464 ACD_sHsps-like Alpha-c 51.6 43 0.00093 21.8 4.7 35 66-101 7-41 (88)
69 cd06481 ACD_HspB9_like Alpha c 48.8 22 0.00048 24.5 3.0 29 28-57 56-86 (87)
70 PRK11597 heat shock chaperone 48.3 48 0.001 25.3 5.0 32 67-99 44-75 (142)
71 CHL00140 rpl6 ribosomal protei 48.3 63 0.0014 25.5 5.9 44 39-97 12-55 (178)
72 PRK10568 periplasmic protein; 47.6 1.4E+02 0.003 23.9 7.8 27 34-61 72-98 (203)
73 cd06498 ACD_alphaB-crystallin_ 46.6 44 0.00096 22.9 4.2 32 66-98 7-38 (84)
74 PTZ00179 60S ribosomal protein 44.2 83 0.0018 25.2 6.0 48 38-97 11-58 (189)
75 cd00061 FN1 Fibronectin type 1 43.3 11 0.00025 23.0 0.7 10 147-156 10-19 (43)
76 cd06472 ACD_ScHsp26_like Alpha 42.3 36 0.00079 23.3 3.3 30 22-56 60-90 (92)
77 cd06475 ACD_HspB1_like Alpha c 40.8 80 0.0017 21.7 4.8 33 66-99 10-42 (86)
78 PF00347 Ribosomal_L6: Ribosom 40.5 43 0.00092 21.9 3.3 46 39-97 2-47 (77)
79 cd06467 p23_NUDC_like p23_like 40.0 67 0.0014 21.2 4.3 30 68-97 10-39 (85)
80 PF14730 DUF4468: Domain of un 37.9 1.3E+02 0.0029 20.6 5.8 62 31-98 4-85 (91)
81 PF01954 DUF104: Protein of un 37.6 33 0.00071 22.5 2.3 31 81-112 3-33 (60)
82 PF12992 DUF3876: Domain of un 37.4 1.1E+02 0.0023 21.9 5.1 38 13-55 26-68 (95)
83 PF08308 PEGA: PEGA domain; I 36.2 1.1E+02 0.0023 19.7 4.7 34 20-57 33-66 (71)
84 cd07698 IgC_MHC_I_alpha3 Class 34.8 1.5E+02 0.0031 20.1 6.0 65 21-90 14-82 (93)
85 COG0097 RplF Ribosomal protein 31.8 2E+02 0.0043 23.0 6.3 48 35-96 8-55 (178)
86 KOG3260 Calcyclin-binding prot 31.7 2.3E+02 0.005 23.1 6.6 79 15-102 77-156 (224)
87 cd06494 p23_NUDCD2_like p23-li 31.3 1E+02 0.0022 21.7 4.1 28 69-96 18-45 (93)
88 smart00058 FN1 Fibronectin typ 31.0 24 0.00052 21.8 0.8 11 146-156 7-17 (45)
89 cd00503 Frataxin Frataxin is a 29.6 54 0.0012 23.7 2.6 17 81-97 28-44 (105)
90 PF01491 Frataxin_Cyay: Fratax 29.1 69 0.0015 23.2 3.1 17 82-98 31-47 (109)
91 smart00107 BTK Bruton's tyrosi 28.8 23 0.0005 21.0 0.4 16 140-156 4-19 (36)
92 COG0071 IbpA Molecular chapero 28.6 1.4E+02 0.0031 22.3 4.8 33 28-61 102-135 (146)
93 KOG3247 Uncharacterized conser 27.1 29 0.00062 31.5 0.9 77 11-101 2-81 (466)
94 PF03537 Glyco_hydro_114: Glyc 27.0 29 0.00063 23.3 0.7 15 143-157 50-66 (74)
95 cd00098 IgC Immunoglobulin Con 26.7 1.7E+02 0.0036 19.2 4.6 70 19-92 11-86 (95)
96 KOG0100 Molecular chaperones G 26.3 3.6E+02 0.0077 25.0 7.6 54 65-118 486-542 (663)
97 PRK00446 cyaY frataxin-like pr 26.2 59 0.0013 23.6 2.2 16 83-98 29-44 (105)
98 TIGR03421 FeS_CyaY iron donor 26.2 58 0.0013 23.5 2.2 16 83-98 27-42 (102)
99 PF07873 YabP: YabP family; I 25.6 51 0.0011 21.6 1.7 21 37-58 23-43 (66)
100 cd05755 Ig2_ICAM-1_like Second 24.9 2.4E+02 0.0052 20.1 5.2 37 13-53 8-45 (100)
101 PF00039 fn1: Fibronectin type 24.1 35 0.00077 20.3 0.6 11 146-156 7-17 (39)
102 KOG3413 Mitochondrial matrix p 22.4 43 0.00092 26.2 0.9 22 77-98 68-89 (156)
103 PHA02745 hypothetical protein; 22.3 36 0.00079 28.6 0.6 77 7-88 53-142 (265)
104 PF12080 GldM_C: GldM C-termin 22.1 1.4E+02 0.0031 23.5 3.9 20 32-52 20-39 (181)
105 TIGR03422 mito_frataxin fratax 21.9 58 0.0013 23.3 1.5 15 84-98 30-44 (97)
106 PF00779 BTK: BTK motif; Inte 21.4 46 0.001 19.1 0.7 13 143-156 2-14 (32)
107 PF14545 DBB: Dof, BCAP, and B 21.1 2.9E+02 0.0064 21.2 5.3 33 22-58 49-84 (142)
108 TIGR02856 spore_yqfC sporulati 20.2 77 0.0017 22.0 1.8 22 37-59 41-62 (85)
109 PRK11198 LysM domain/BON super 20.0 1.6E+02 0.0035 22.2 3.7 27 35-62 38-64 (147)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.2e-23 Score=156.91 Aligned_cols=95 Identities=24% Similarity=0.438 Sum_probs=84.8
Q ss_pred CCCCccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-----------CceeeEEEEEECCCCC
Q 042976 10 DFEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-----------NNVESFSKRIEVPKDC 78 (163)
Q Consensus 10 ~~~P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-----------~~~g~F~r~~~LP~~v 78 (163)
.+.|++||.++++.|.|. ++||||+++||+|++. ++.|+|+|++.... ..+|.|+|+|.||..+
T Consensus 38 ~~~P~vdi~e~~~~~~I~----~elPG~~kedI~I~~~-~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRIT----AELPGVDKEDIEITVE-GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEE----EEcCCCChHHeEEEEE-CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc
Confidence 367999999999999999 9999999999999999 99999999997621 2478999999999999
Q ss_pred CcCceEEEEeCCEEEEEeeccCCCC--ceeeee
Q 042976 79 KSDRIKAKLSNGILRLTMPKKTHSH--VTRNQA 109 (163)
Q Consensus 79 d~~~i~A~~~nGvL~I~~PK~~~~~--~~~i~I 109 (163)
+++.++|+|+||+|+|++||..+.. +++|.|
T Consensus 113 ~~~~~~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 113 DPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred cccceeeEeeCcEEEEEEeccccccccCceeec
Confidence 9999999999999999999988764 445544
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.89 E-value=1.6e-22 Score=155.18 Aligned_cols=97 Identities=13% Similarity=0.306 Sum_probs=82.8
Q ss_pred CCCCccceEEc-CCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC---------CceeeEEEEEECCCCCC
Q 042976 10 DFEPRCRWRRE-EHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE---------NNVESFSKRIEVPKDCK 79 (163)
Q Consensus 10 ~~~P~~di~e~-~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~---------~~~g~F~r~~~LP~~vd 79 (163)
...|++|+.++ +++|+|. ++|||++++||+|.++ ++.|+|+|+++..+ +++|+|.|+|.||.+||
T Consensus 30 ~~~P~vdI~e~~~~~y~v~----adlPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd 104 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRIT----LALAGFRQEDLDIQLE-GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENME 104 (142)
T ss_pred CCCCcEEEEEcCCCEEEEE----EEeCCCCHHHeEEEEE-CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcc
Confidence 44599999984 6899999 9999999999999999 99999999975432 25789999999999999
Q ss_pred cCceEEEEeCCEEEEEeecc--CCCCceeeeeecCC
Q 042976 80 SDRIKAKLSNGILRLTMPKK--THSHVTRNQAAATA 113 (163)
Q Consensus 80 ~~~i~A~~~nGvL~I~~PK~--~~~~~~~i~I~~~~ 113 (163)
.+ +|+|+||||+|++||. +..++++|.|+..+
T Consensus 105 ~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~~~~ 138 (142)
T PRK11597 105 VS--GATFVNGLLHIDLIRNEPEAIAPQRIAISERP 138 (142)
T ss_pred cC--cCEEcCCEEEEEEeccCccccCCcEEEECCcc
Confidence 98 6999999999999997 44567777776533
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.89 E-value=8.5e-23 Score=155.86 Aligned_cols=90 Identities=16% Similarity=0.356 Sum_probs=78.4
Q ss_pred CccceEE-cCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC---------CceeeEEEEEECCCCCCcCc
Q 042976 13 PRCRWRR-EEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE---------NNVESFSKRIEVPKDCKSDR 82 (163)
Q Consensus 13 P~~di~e-~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~---------~~~g~F~r~~~LP~~vd~~~ 82 (163)
|++|+.+ ++++|+|. ++|||++++||+|+++ ++.|+|+|+++... +.+|+|+|+|.||.+||.+
T Consensus 35 p~~di~ee~~~~~~v~----aelPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~- 108 (137)
T PRK10743 35 PPYNVELVDENHYRIA----IAVAGFAESELEITAQ-DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR- 108 (137)
T ss_pred CcEEEEEcCCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC-
Confidence 8899995 88999999 9999999999999999 99999999986542 2468999999999999999
Q ss_pred eEEEEeCCEEEEEeeccC--CCCceeeee
Q 042976 83 IKAKLSNGILRLTMPKKT--HSHVTRNQA 109 (163)
Q Consensus 83 i~A~~~nGvL~I~~PK~~--~~~~~~i~I 109 (163)
+|+|+||||+|++||.. ..++++|.|
T Consensus 109 -~A~~~dGVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 109 -GANLVNGLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred -cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence 49999999999999963 345566665
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.87 E-value=8.9e-22 Score=139.75 Aligned_cols=81 Identities=36% Similarity=0.647 Sum_probs=73.0
Q ss_pred ccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-----------CceeeEEEEEECCCCCCcCc
Q 042976 14 RCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-----------NNVESFSKRIEVPKDCKSDR 82 (163)
Q Consensus 14 ~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-----------~~~g~F~r~~~LP~~vd~~~ 82 (163)
++||.++++.|.|. ++||||+++||+|.+++++.|+|+|++.... +.+|+|.|+|+||.++|.+.
T Consensus 1 ~~dv~E~~~~~~i~----~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFK----ADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEE----EECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 47999999999999 9999999999999998335899999985431 24689999999999999999
Q ss_pred eEEEEeCCEEEEEeec
Q 042976 83 IKAKLSNGILRLTMPK 98 (163)
Q Consensus 83 i~A~~~nGvL~I~~PK 98 (163)
|+|+|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.86 E-value=5.9e-21 Score=136.76 Aligned_cols=89 Identities=35% Similarity=0.628 Sum_probs=72.7
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeecc---------CCceeeEEEEEECCCCCCcCceEEE
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPID---------ENNVESFSKRIEVPKDCKSDRIKAK 86 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~---------~~~~g~F~r~~~LP~~vd~~~i~A~ 86 (163)
||.++++.|.|. ++||||.++||+|++. ++.|.|+|++... +.+++.|.|+|.||.++|.+.|+|+
T Consensus 1 di~e~~~~~~i~----~~lpG~~~edi~I~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~ 75 (102)
T PF00011_consen 1 DIKEDEDEYIIK----VDLPGFDKEDIKIKVD-DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKAS 75 (102)
T ss_dssp EEEESSSEEEEE----EE-TTS-GGGEEEEEE-TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEE
T ss_pred CeEECCCEEEEE----EECCCCChHHEEEEEe-cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEE
Confidence 689999999999 9999999999999999 9999999999921 1245799999999999999999999
Q ss_pred EeCCEEEEEeeccCCC---Cceeeee
Q 042976 87 LSNGILRLTMPKKTHS---HVTRNQA 109 (163)
Q Consensus 87 ~~nGvL~I~~PK~~~~---~~~~i~I 109 (163)
|+||+|+|++||.... .+++|+|
T Consensus 76 ~~~GvL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 76 YENGVLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp ETTSEEEEEEEBSSSCTTSSSCEE-E
T ss_pred ecCCEEEEEEEccccccCCCCeEEEe
Confidence 9999999999998765 3556655
No 6
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.85 E-value=4.6e-21 Score=134.31 Aligned_cols=78 Identities=13% Similarity=0.364 Sum_probs=72.1
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-CceeeEEEEEECCCCCCcCceEEEE-eCCEEE
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-NNVESFSKRIEVPKDCKSDRIKAKL-SNGILR 93 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-~~~g~F~r~~~LP~~vd~~~i~A~~-~nGvL~ 93 (163)
|+.++++.|.|. ++||||+|+||+|++. ++.|+|+|+++... ..+|+|+|+|.||.+||++.|+|+| +||+|+
T Consensus 2 ~v~e~~~~~~v~----~dlpG~~pedi~V~v~-~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~ 76 (81)
T cd06479 2 NVKTLGDTYQFA----VDVSDFSPEDIIVTTS-NNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLT 76 (81)
T ss_pred CccCcCCeEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEE
Confidence 678899999999 9999999999999999 99999999986543 3579999999999999999999998 899999
Q ss_pred EEeec
Q 042976 94 LTMPK 98 (163)
Q Consensus 94 I~~PK 98 (163)
|++++
T Consensus 77 I~~~~ 81 (81)
T cd06479 77 IKARR 81 (81)
T ss_pred EEecC
Confidence 99985
No 7
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.85 E-value=6.5e-21 Score=135.17 Aligned_cols=80 Identities=31% Similarity=0.567 Sum_probs=73.5
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-------------CceeeEEEEEECCCCCC
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-------------NNVESFSKRIEVPKDCK 79 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-------------~~~g~F~r~~~LP~~vd 79 (163)
|++||.++++.|.|. ++|||++++||+|.+. ++.|+|+|++.... +.+|+|.|.|.|| +++
T Consensus 1 ~~~di~e~~~~~~i~----~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 1 MKTDIKETDDEYIVE----ADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred CceeEEEcCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 578999999999999 9999999999999999 89999999997421 2578999999999 799
Q ss_pred cCceEEEEeCCEEEEEeec
Q 042976 80 SDRIKAKLSNGILRLTMPK 98 (163)
Q Consensus 80 ~~~i~A~~~nGvL~I~~PK 98 (163)
.+.++|+|+||+|+|++||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999997
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.85 E-value=7.3e-21 Score=134.41 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=70.7
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEE-eCC
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKL-SNG 90 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~-~nG 90 (163)
++.+++++|.|. ++||||+++||+|++. ++.|+|+|++..... ..+.|+|+|.||.+||.++|+|+| +||
T Consensus 4 ~v~e~~~~~~v~----~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dG 78 (86)
T cd06497 4 EVRSDRDKFTIY----LDVKHFSPEDLTVKVL-DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADG 78 (86)
T ss_pred eEEEcCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCC
Confidence 688999999999 9999999999999999 999999999754322 235799999999999999999999 799
Q ss_pred EEEEEeec
Q 042976 91 ILRLTMPK 98 (163)
Q Consensus 91 vL~I~~PK 98 (163)
+|+|++||
T Consensus 79 vL~I~~PK 86 (86)
T cd06497 79 MLTFSGPK 86 (86)
T ss_pred EEEEEecC
Confidence 99999998
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.84 E-value=1.4e-20 Score=132.50 Aligned_cols=78 Identities=26% Similarity=0.444 Sum_probs=69.6
Q ss_pred eEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEEe-CCE
Q 042976 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKLS-NGI 91 (163)
Q Consensus 17 i~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~~-nGv 91 (163)
+..++++|.|. ++||||+|+||+|++. ++.|+|+|+++.... ..++|.|+|.||.+||.+.|+|+|+ ||+
T Consensus 2 ~~~~~~~~~v~----~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGv 76 (84)
T cd06498 2 MRLEKDKFSVN----LDVKHFSPEELKVKVL-GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGV 76 (84)
T ss_pred eEeCCceEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCE
Confidence 45678999999 9999999999999999 999999998765322 3468999999999999999999996 999
Q ss_pred EEEEeecc
Q 042976 92 LRLTMPKK 99 (163)
Q Consensus 92 L~I~~PK~ 99 (163)
|+|++||+
T Consensus 77 L~I~lPk~ 84 (84)
T cd06498 77 LTVCGPRK 84 (84)
T ss_pred EEEEEeCC
Confidence 99999984
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.84 E-value=1.9e-20 Score=131.30 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=69.3
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEE-eCC
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKL-SNG 90 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~-~nG 90 (163)
++.+++++|.|. ++||||+++||+|++. ++.|+|+|++..... ..+.|.|+|.||.+||.++|+|+| +||
T Consensus 1 ~~~~~~~~~~v~----~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dG 75 (83)
T cd06478 1 EVRLDKDRFSVN----LDVKHFSPEELSVKVL-GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADG 75 (83)
T ss_pred CeeecCceEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCC
Confidence 366788999999 9999999999999999 899999999764322 135799999999999999999999 599
Q ss_pred EEEEEeec
Q 042976 91 ILRLTMPK 98 (163)
Q Consensus 91 vL~I~~PK 98 (163)
+|+|++||
T Consensus 76 vL~I~~PK 83 (83)
T cd06478 76 VLTISGPR 83 (83)
T ss_pred EEEEEecC
Confidence 99999997
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.83 E-value=3.9e-20 Score=130.68 Aligned_cols=78 Identities=22% Similarity=0.438 Sum_probs=71.7
Q ss_pred cceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEEe-C
Q 042976 15 CRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKLS-N 89 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~~-n 89 (163)
.+|.+++++|.|. ++||||+++||+|++. ++.|+|+|++..... ..++|+|+|.||.+||.++|+|+|. |
T Consensus 3 ~~i~e~~~~~~v~----~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d 77 (86)
T cd06475 3 SEIRQTADRWKVS----LDVNHFAPEELVVKTK-DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD 77 (86)
T ss_pred ceEEEcCCeEEEE----EECCCCCHHHEEEEEE-CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC
Confidence 5899999999999 9999999999999999 899999999875432 2478999999999999999999997 9
Q ss_pred CEEEEEee
Q 042976 90 GILRLTMP 97 (163)
Q Consensus 90 GvL~I~~P 97 (163)
|+|+|++|
T Consensus 78 GvL~I~lP 85 (86)
T cd06475 78 GILTVEAP 85 (86)
T ss_pred CeEEEEec
Confidence 99999998
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=5e-20 Score=129.50 Aligned_cols=76 Identities=25% Similarity=0.428 Sum_probs=68.0
Q ss_pred EEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEEe-CCEE
Q 042976 18 RREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKLS-NGIL 92 (163)
Q Consensus 18 ~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~~-nGvL 92 (163)
..++++|.|. ++||||+++||+|++. ++.|+|+|++..... ..+.|.|+|.||.+||+++|+|+|+ ||+|
T Consensus 3 ~~~~d~y~v~----~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL 77 (83)
T cd06476 3 ESEDDKYQVF----LDVCHFTPDEITVRTV-DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGIL 77 (83)
T ss_pred eccCCeEEEE----EEcCCCCHHHeEEEEE-CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEE
Confidence 4467999999 9999999999999999 999999999854322 3578999999999999999999996 9999
Q ss_pred EEEeec
Q 042976 93 RLTMPK 98 (163)
Q Consensus 93 ~I~~PK 98 (163)
+|++||
T Consensus 78 ~I~~Pr 83 (83)
T cd06476 78 CIQAPR 83 (83)
T ss_pred EEEecC
Confidence 999997
No 13
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.83 E-value=7.6e-20 Score=129.74 Aligned_cols=79 Identities=23% Similarity=0.528 Sum_probs=71.8
Q ss_pred CccceEEcC-CEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----------ceeeEEEEEECCCCCCcC
Q 042976 13 PRCRWRREE-HQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----------NVESFSKRIEVPKDCKSD 81 (163)
Q Consensus 13 P~~di~e~~-~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----------~~g~F~r~~~LP~~vd~~ 81 (163)
|++|+.+++ +.|.|. ++|||++++||+|.++ ++.|+|+|++..... .+|+|.|+|.||.++|.+
T Consensus 1 p~~di~e~~~~~~~v~----~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~ 75 (90)
T cd06470 1 PPYNIEKTGENNYRIT----LAVAGFSEDDLEIEVE-NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK 75 (90)
T ss_pred CCeeeEEcCCCeEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC
Confidence 789999975 999999 9999999999999999 999999999876541 378999999999999875
Q ss_pred ceEEEEeCCEEEEEeec
Q 042976 82 RIKAKLSNGILRLTMPK 98 (163)
Q Consensus 82 ~i~A~~~nGvL~I~~PK 98 (163)
+|+|+||+|+|++|+
T Consensus 76 --~A~~~~GvL~I~l~~ 90 (90)
T cd06470 76 --GAELENGLLTIDLER 90 (90)
T ss_pred --eeEEeCCEEEEEEEC
Confidence 899999999999985
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.80 E-value=2.7e-19 Score=126.61 Aligned_cols=74 Identities=24% Similarity=0.501 Sum_probs=66.5
Q ss_pred cCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC--------ceeeEEEEEECCCCCCcCceEEEE-eCC
Q 042976 20 EEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN--------NVESFSKRIEVPKDCKSDRIKAKL-SNG 90 (163)
Q Consensus 20 ~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~--------~~g~F~r~~~LP~~vd~~~i~A~~-~nG 90 (163)
.++.|.|. ++||||+++||+|++. ++.|+|+|++..... .+++|.|+|.||.+||.+.|+|.| +||
T Consensus 5 ~~d~~~v~----~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 5 GKEGFSLK----LDVRGFSPEDLSVRVD-GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred ccceEEEE----EECCCCChHHeEEEEE-CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 34888888 9999999999999999 999999999865421 358999999999999999999999 899
Q ss_pred EEEEEeec
Q 042976 91 ILRLTMPK 98 (163)
Q Consensus 91 vL~I~~PK 98 (163)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=4.4e-19 Score=123.79 Aligned_cols=72 Identities=31% Similarity=0.591 Sum_probs=66.6
Q ss_pred CEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC----CceeeEEEEEECCCCCCcCceEEEEeC-CEEEEEe
Q 042976 22 HQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE----NNVESFSKRIEVPKDCKSDRIKAKLSN-GILRLTM 96 (163)
Q Consensus 22 ~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~----~~~g~F~r~~~LP~~vd~~~i~A~~~n-GvL~I~~ 96 (163)
+.|.|. ++||||+++||+|+++ ++.|+|+|++.... ..+++|.|+|.||.+||++.++|+|.| |+|+|++
T Consensus 7 ~~~~v~----~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~ 81 (83)
T cd06526 7 EKFQVT----LDVKGFKPEELKVKVS-DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEA 81 (83)
T ss_pred eeEEEE----EECCCCCHHHcEEEEE-CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEe
Confidence 588888 9999999999999999 89999999998653 246899999999999999999999997 9999999
Q ss_pred ec
Q 042976 97 PK 98 (163)
Q Consensus 97 PK 98 (163)
||
T Consensus 82 Pk 83 (83)
T cd06526 82 PK 83 (83)
T ss_pred cC
Confidence 97
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.79 E-value=8.7e-19 Score=123.32 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=67.0
Q ss_pred EEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC--C--ceeeEEEEEECCCCCCcCceEEEE-eCCEE
Q 042976 18 RREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE--N--NVESFSKRIEVPKDCKSDRIKAKL-SNGIL 92 (163)
Q Consensus 18 ~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~--~--~~g~F~r~~~LP~~vd~~~i~A~~-~nGvL 92 (163)
.++++.|.|. ++||||+|+||+|++. ++.|+|+|++.... . ..++|.|+|.||.+|+.+.|+|+| +||+|
T Consensus 3 ~e~~~~~~v~----~dlpG~~~edI~V~v~-~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL 77 (83)
T cd06477 3 EEGKPMFQIL----LDVVQFRPEDIIIQVF-EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGIL 77 (83)
T ss_pred ccCCceEEEE----EEcCCCCHHHeEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEE
Confidence 3567999999 9999999999999999 99999999986532 2 246999999999999999999998 79999
Q ss_pred EEEee
Q 042976 93 RLTMP 97 (163)
Q Consensus 93 ~I~~P 97 (163)
+|+.|
T Consensus 78 ~I~~~ 82 (83)
T cd06477 78 VVETK 82 (83)
T ss_pred EEEec
Confidence 99986
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=1.8e-18 Score=119.23 Aligned_cols=78 Identities=38% Similarity=0.669 Sum_probs=72.0
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----------ceeeEEEEEECCCCCCcCceEE
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----------NVESFSKRIEVPKDCKSDRIKA 85 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----------~~g~F~r~~~LP~~vd~~~i~A 85 (163)
++.+++++|.|. ++||||++++|+|++. ++.|.|+|++..... .++.|.|+|.||.++|.+.++|
T Consensus 1 ~i~e~~~~~~i~----~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a 75 (88)
T cd06464 1 DVYETDDAYVVE----ADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKA 75 (88)
T ss_pred CcEEcCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEE
Confidence 467888999999 9999999999999999 899999999986532 3789999999999999999999
Q ss_pred EEeCCEEEEEeec
Q 042976 86 KLSNGILRLTMPK 98 (163)
Q Consensus 86 ~~~nGvL~I~~PK 98 (163)
.|+||+|+|++||
T Consensus 76 ~~~~G~L~I~~pk 88 (88)
T cd06464 76 SLENGVLTITLPK 88 (88)
T ss_pred EEeCCEEEEEEcC
Confidence 9999999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.77 E-value=2.6e-18 Score=121.92 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=66.2
Q ss_pred cCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-------CceeeEEEEEECCCCCCcCceEEEEeCC-E
Q 042976 20 EEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-------NNVESFSKRIEVPKDCKSDRIKAKLSNG-I 91 (163)
Q Consensus 20 ~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-------~~~g~F~r~~~LP~~vd~~~i~A~~~nG-v 91 (163)
+++.|+|. ++||||+++||+|++. ++.|+|+|+++... +++|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~----adlPG~~kedI~V~v~-~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLAS----VDVCGFEPDQVKVKVK-DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 45889999 9999999999999999 99999999986532 3578999999999999999999999955 9
Q ss_pred EEEEeec
Q 042976 92 LRLTMPK 98 (163)
Q Consensus 92 L~I~~PK 98 (163)
|+|..|.
T Consensus 81 l~i~~~~ 87 (87)
T cd06482 81 VKIETPC 87 (87)
T ss_pred EEEeeCC
Confidence 9999873
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.73 E-value=2.9e-17 Score=117.51 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=71.4
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCC----ceeeEEEEEECCCCCCcCceEEEEe
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDEN----NVESFSKRIEVPKDCKSDRIKAKLS 88 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~----~~g~F~r~~~LP~~vd~~~i~A~~~ 88 (163)
|.-....+++.|.|. +|+.||++|||+|++. ++.|+|+|+++.... ..++|.|+|.||.+||++.|+|.|.
T Consensus 6 ~~~~~~~~~~~f~v~----ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 6 PRNPPPNSSEPWKVC----VNVHSFKPEELTVKTK-DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred ccCCCCCCCCcEEEE----EEeCCCCHHHcEEEEE-CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeC
Confidence 444456677889888 9999999999999999 999999999986532 2579999999999999999999999
Q ss_pred -CCEEEEEeec
Q 042976 89 -NGILRLTMPK 98 (163)
Q Consensus 89 -nGvL~I~~PK 98 (163)
||+|+|.+|.
T Consensus 81 ~dGvL~IeaP~ 91 (91)
T cd06480 81 PEGLLIIEAPQ 91 (91)
T ss_pred CCCeEEEEcCC
Confidence 9999999983
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-16 Score=125.20 Aligned_cols=93 Identities=20% Similarity=0.398 Sum_probs=81.0
Q ss_pred ccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCc----eeeEEEEEECCCCCCcCceEEEEe-
Q 042976 14 RCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENN----VESFSKRIEVPKDCKSDRIKAKLS- 88 (163)
Q Consensus 14 ~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~----~g~F~r~~~LP~~vd~~~i~A~~~- 88 (163)
..++..+.+.|.+. +|+..|+|++|+|++. |+.|.|+|++++.++. .++|.|+|.||.+||+++|++.|+
T Consensus 64 ~~~~~~~~~~F~V~----lDV~~F~PeEl~Vk~~-~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~ 138 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVN----LDVHQFKPEELKVKTD-DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS 138 (173)
T ss_pred ccccccCCCcEEEE----EEcccCcccceEEEeC-CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC
Confidence 35666677888888 9999999999999999 8999999999988654 458999999999999999999998
Q ss_pred CCEEEEEeeccCCCC--ceeeeeec
Q 042976 89 NGILRLTMPKKTHSH--VTRNQAAA 111 (163)
Q Consensus 89 nGvL~I~~PK~~~~~--~~~i~I~~ 111 (163)
||+|+|++||..... .+.|+|+.
T Consensus 139 dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 139 DGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred CceEEEEccCCCCcCccceEEeEee
Confidence 999999999987654 56666665
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6e-15 Score=118.56 Aligned_cols=102 Identities=27% Similarity=0.440 Sum_probs=87.2
Q ss_pred CCCCCCCCccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC-------------CceeeEEEEE
Q 042976 6 QLPADFEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE-------------NNVESFSKRI 72 (163)
Q Consensus 6 ~~~~~~~P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~-------------~~~g~F~r~~ 72 (163)
.+...+.+..++.+.++.|.+. ++|||+++++++|.++.++.|.|+|++.... +..|.|.|.+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~----~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~ 153 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFK----VDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRF 153 (196)
T ss_pred cccccccCCcccccCCCceEEE----eeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeee
Confidence 3555666778889999999999 9999999999999999444899999997653 2468999999
Q ss_pred ECCCCCCcCceEEEEeCCEEEEEeeccCC--CCceeeeeec
Q 042976 73 EVPKDCKSDRIKAKLSNGILRLTMPKKTH--SHVTRNQAAA 111 (163)
Q Consensus 73 ~LP~~vd~~~i~A~~~nGvL~I~~PK~~~--~~~~~i~I~~ 111 (163)
.||++++.+.|+|.|.||+|+|++||..+ .+++..+|.+
T Consensus 154 ~lPenv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 154 ELPENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred cCCccccHHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 99999999999999999999999999887 4566666654
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.53 E-value=1.2e-13 Score=91.39 Aligned_cols=77 Identities=35% Similarity=0.668 Sum_probs=70.2
Q ss_pred eEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccC---CceeeEEEEEECCCCCCcCceEEEEeCCEEE
Q 042976 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE---NNVESFSKRIEVPKDCKSDRIKAKLSNGILR 93 (163)
Q Consensus 17 i~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~---~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~ 93 (163)
|.++++.|.|. +++||+.+++++|.+. ++.|.|+|...... ...+.|.+.+.||..++++.++|.+.+|+|.
T Consensus 1 ~~q~~~~v~i~----i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~ 75 (80)
T cd00298 1 WYQTDDEVVVT----VDLPGVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLE 75 (80)
T ss_pred CEEcCCEEEEE----EECCCCCHHHeEEEEE-CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEE
Confidence 67888999999 9999999999999999 89999999987542 2467999999999999999999999999999
Q ss_pred EEeec
Q 042976 94 LTMPK 98 (163)
Q Consensus 94 I~~PK 98 (163)
|.+||
T Consensus 76 i~l~K 80 (80)
T cd00298 76 ITLPK 80 (80)
T ss_pred EEEcC
Confidence 99997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.32 E-value=1.8e-11 Score=83.41 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=65.3
Q ss_pred eEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEe
Q 042976 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTM 96 (163)
Q Consensus 17 i~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 96 (163)
|.++++.+.|. +++||+++++++|.+. ++.|.|+| ..|.+.+.||..||++..++++.+|.|.|++
T Consensus 1 W~Qt~~~v~i~----i~~p~v~~~~v~v~~~-~~~l~i~~---------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L 66 (78)
T cd06469 1 WSQTDEDVKIS----VPLKGVKTSKVDIFCS-DLYLKVNF---------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTL 66 (78)
T ss_pred CcccCCEEEEE----EEeCCCccccceEEEe-cCEEEEcC---------CCEEEEEeCcccccccccEEEEeCCEEEEEE
Confidence 67888999999 9999999999999999 89999987 2489999999999999999999999999999
Q ss_pred eccCC
Q 042976 97 PKKTH 101 (163)
Q Consensus 97 PK~~~ 101 (163)
||..+
T Consensus 67 ~K~~~ 71 (78)
T cd06469 67 VKKEP 71 (78)
T ss_pred EeCCC
Confidence 99754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.05 E-value=2.8e-09 Score=72.05 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=68.0
Q ss_pred eEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEe
Q 042976 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTM 96 (163)
Q Consensus 17 i~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 96 (163)
|.++++.+.|. +.+||..++++.|.+. ++.|.|++... ..+.|...+.|+..|+++...+++.+|.|.|++
T Consensus 1 W~Q~~~~v~i~----v~~~~~~~~~~~v~~~-~~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L 71 (84)
T cd06463 1 WYQTLDEVTIT----IPLKDVTKKDVKVEFT-PKSLTVSVKGG----GGKEYLLEGELFGPIDPEESKWTVEDRKIEITL 71 (84)
T ss_pred CcccccEEEEE----EEcCCCCccceEEEEe-cCEEEEEeeCC----CCCceEEeeEccCccchhhcEEEEeCCEEEEEE
Confidence 66788999999 9999999999999999 89999998754 235689999999999999999999999999999
Q ss_pred eccCC
Q 042976 97 PKKTH 101 (163)
Q Consensus 97 PK~~~ 101 (163)
+|..+
T Consensus 72 ~K~~~ 76 (84)
T cd06463 72 KKKEP 76 (84)
T ss_pred EECCC
Confidence 99765
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.90 E-value=1.3e-08 Score=80.63 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCccceEEcCC-EEEEEEeeEEEcCCCCCCC-EEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeC
Q 042976 12 EPRCRWRREEH-QFMLSFSYYYMVVGFKKDQ-IRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSN 89 (163)
Q Consensus 12 ~P~~di~e~~~-~y~l~f~v~~dlPG~~~ed-i~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~n 89 (163)
.|.+++.+.++ .++|. ++|||+++++ |+|.++ .+.+.|.... .+.+.+++.||.. +++.++++|+|
T Consensus 91 ~~~vdtre~dDge~~Vv----AdLPGVs~dd~idV~l~-~d~~~L~i~~------~~~~~krv~L~~~-~~e~~~~t~nN 158 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVV----ADLPGVSDDDAIDVTLD-DDEGALTIRV------GEKYLKRVALPWP-DPEITSATFNN 158 (177)
T ss_pred eeeeeeEecCCCcEEEE----EeCCCCCcccceeeEee-cCCceEEEec------CCceEeeEecCCC-ccceeeEEEeC
Confidence 46788888776 57777 9999999888 999998 4544444333 2347899999977 68889999999
Q ss_pred CEEEEEeeccCCC
Q 042976 90 GILRLTMPKKTHS 102 (163)
Q Consensus 90 GvL~I~~PK~~~~ 102 (163)
|||.|.+-+....
T Consensus 159 gILEIri~~~~~~ 171 (177)
T PF05455_consen 159 GILEIRIRRTEES 171 (177)
T ss_pred ceEEEEEeecCCC
Confidence 9999999876543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.83 E-value=2.9e-08 Score=68.17 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=68.6
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEE
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLT 95 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~ 95 (163)
||.++++...|. +.+||+.++++.|.+. ++.|.|++... ..+.|...+.|+..|+++..++++.+|.|.|+
T Consensus 1 dW~Qt~~~v~i~----v~~~~~~~~~v~v~~~-~~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~ 71 (84)
T cd06466 1 DWYQTDTSVTVT----IYAKNVDKEDVKVEFN-EQSLSVSIILP----GGSEYQLELDLFGPIDPEQSKVSVLPTKVEIT 71 (84)
T ss_pred CccccCCEEEEE----EEECCCCHHHCEEEEe-cCEEEEEEECC----CCCeEEEecccccccCchhcEEEEeCeEEEEE
Confidence 689999999999 9999999999999999 89999987653 13468889999999999999999999999999
Q ss_pred eeccCC
Q 042976 96 MPKKTH 101 (163)
Q Consensus 96 ~PK~~~ 101 (163)
+.|..+
T Consensus 72 L~K~~~ 77 (84)
T cd06466 72 LKKAEP 77 (84)
T ss_pred EEcCCC
Confidence 999754
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.64 E-value=1.1e-06 Score=58.74 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=65.9
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCC--CCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCC
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGF--KKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNG 90 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nG 90 (163)
|+++|.++++...|. +.+++. ++++++|.+. ++.|.|+...... ..|.....|...|+++....++.++
T Consensus 1 ~~y~W~Qt~~~V~v~----i~~~~~~~~~~dv~v~~~-~~~l~v~~~~~~~----~~~~~~~~L~~~I~~~~s~~~~~~~ 71 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVT----IPVKPVDISKEDVKVDFT-DTSLSVSIKSGDG----KEYLLEGELFGEIDPDESTWKVKDN 71 (79)
T ss_dssp SSEEEEEESSEEEEE----EE-TTTTSSGGGEEEEEE-TTEEEEEEEETTS----CEEEEEEEBSS-BECCCEEEEEETT
T ss_pred CCeEEEECCCEEEEE----EEEcCCCCChHHeEEEEE-eeEEEEEEEccCC----ceEEEEEEEeeeEcchhcEEEEECC
Confidence 789999999999999 999665 5999999999 9999999664322 5688888999999999999999999
Q ss_pred EEEEEeec
Q 042976 91 ILRLTMPK 98 (163)
Q Consensus 91 vL~I~~PK 98 (163)
.|.|+|.|
T Consensus 72 ~i~i~L~K 79 (79)
T PF04969_consen 72 KIEITLKK 79 (79)
T ss_dssp EEEEEEEB
T ss_pred EEEEEEEC
Confidence 99999986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.25 E-value=1.8e-05 Score=57.35 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=68.1
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGIL 92 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL 92 (163)
|.++|.++.+...|. +.+||. +++.|.+. .+.|.|++.... ....|.-.+.|...|+++..+.++.++.|
T Consensus 1 p~~~W~Qt~~~V~i~----i~~~~~--~~~~V~~~-~~~l~v~~~~~~---~~~~y~~~~~L~~~I~pe~s~~~v~~~kv 70 (108)
T cd06465 1 PPVLWAQRSDVVYLT----IELPDA--KDPKIKLE-PTSLSFKAKGGG---GGKKYEFDLEFYKEIDPEESKYKVTGRQI 70 (108)
T ss_pred CceeeeECCCEEEEE----EEeCCC--CCcEEEEE-CCEEEEEEEcCC---CCeeEEEEeEhhhhccccccEEEecCCeE
Confidence 789999999999999 999998 88999999 899999985421 12447788899999999999999999999
Q ss_pred EEEeeccC
Q 042976 93 RLTMPKKT 100 (163)
Q Consensus 93 ~I~~PK~~ 100 (163)
.|+|.|..
T Consensus 71 eI~L~K~~ 78 (108)
T cd06465 71 EFVLRKKE 78 (108)
T ss_pred EEEEEECC
Confidence 99999976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.03 E-value=3e-05 Score=65.55 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=58.1
Q ss_pred CCEEEEEEeeEEEcCCC-CCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEe--CCEEEEEee
Q 042976 21 EHQFMLSFSYYYMVVGF-KKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLS--NGILRLTMP 97 (163)
Q Consensus 21 ~~~y~l~f~v~~dlPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~--nGvL~I~~P 97 (163)
.+.++|+ ++|||+ +..+|+|.|. +..|.|..... .|.-.+.||..||.+..+|+|. .++|+|++|
T Consensus 260 p~~lvv~----i~LP~~~s~~~i~LdV~-~~~l~l~~~~~-------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVE----IELPGVESASDIDLDVS-EDRLSLSSPKP-------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEE----EECCCcCccceeEEEEe-CCEEEEEeCCC-------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 3788888 999999 8899999999 89999984442 5888999999999999999998 799999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.02 E-value=7.3e-05 Score=51.67 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=66.0
Q ss_pred ceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEE
Q 042976 16 RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLT 95 (163)
Q Consensus 16 di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~ 95 (163)
||.++++...|. +.++|+.++++.|.+. ++.|.+++.... ...|.-.+.|...|+++..+.++..+-+.|.
T Consensus 1 dW~Q~~~~V~it----i~~k~~~~~~~~v~~~-~~~l~~~~~~~~----~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~ 71 (84)
T cd06489 1 DWYQTESQVVIT----ILIKNVKPEDVSVEFE-KRELSATVKLPS----GNDYSLKLHLLHPIVPEQSSYKILSTKIEIK 71 (84)
T ss_pred CccccCCEEEEE----EEECCCCHHHCEEEEe-CCEEEEEEECCC----CCcEEEeeecCceecchhcEEEEeCcEEEEE
Confidence 688999999999 9999999999999999 899999976531 1247778899999999988888889999999
Q ss_pred eeccCC
Q 042976 96 MPKKTH 101 (163)
Q Consensus 96 ~PK~~~ 101 (163)
+.|...
T Consensus 72 L~K~~~ 77 (84)
T cd06489 72 LKKTEA 77 (84)
T ss_pred EEcCCC
Confidence 999653
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.95 E-value=0.0001 Score=50.58 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=62.2
Q ss_pred cceEEcCCEEEEEEeeEEEcC-CCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeC-CEE
Q 042976 15 CRWRREEHQFMLSFSYYYMVV-GFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSN-GIL 92 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~n-GvL 92 (163)
+.|.++++...|. +.+| ++.++|++|.+. ++.|.|+... +...-.-.|...|+++....++.+ ..|
T Consensus 1 y~W~Qt~~~V~i~----i~~~~~~~~~dv~v~~~-~~~l~v~~~~-------~~~~l~~~L~~~I~~~~s~w~~~~~~~v 68 (85)
T cd06467 1 YSWTQTLDEVTVT----IPLPEGTKSKDVKVEIT-PKHLKVGVKG-------GEPLLDGELYAKVKVDESTWTLEDGKLL 68 (85)
T ss_pred CEEEeeCCEEEEE----EECCCCCcceeEEEEEE-cCEEEEEECC-------CCceEcCcccCceeEcCCEEEEeCCCEE
Confidence 4789999999999 9997 889999999999 8999998642 112333468899999998889999 999
Q ss_pred EEEeeccCC
Q 042976 93 RLTMPKKTH 101 (163)
Q Consensus 93 ~I~~PK~~~ 101 (163)
.|+++|..+
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06467 69 EITLEKRNE 77 (85)
T ss_pred EEEEEECCC
Confidence 999999764
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.89 E-value=0.00024 Score=49.73 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=67.4
Q ss_pred ccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEE
Q 042976 14 RCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILR 93 (163)
Q Consensus 14 ~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~ 93 (163)
++||.++++...|. +.+.|+.++++.+.++ ++.|.|...... ...|.-.+.|-..|+++..+.+...+-+.
T Consensus 2 R~dW~Qs~~~V~It----I~~k~~~~~~~~v~~~-~~~l~v~~~~~~----~~~y~~~l~L~~~I~~~~s~~~v~~~kve 72 (87)
T cd06488 2 RHDWHQTGSHVVVS----VYAKNSNPELSVVEAN-STVLTIHIVFEG----NKEFQLDIELWGVIDVEKSSVNMLPTKVE 72 (87)
T ss_pred CccEeeCCCEEEEE----EEECcCCccceEEEec-CCEEEEEEECCC----CceEEEEeeccceEChhHcEEEecCcEEE
Confidence 47999999999999 8889999999999999 888888765432 23478888999999999988888899999
Q ss_pred EEeeccCC
Q 042976 94 LTMPKKTH 101 (163)
Q Consensus 94 I~~PK~~~ 101 (163)
|++.|..+
T Consensus 73 i~L~K~~~ 80 (87)
T cd06488 73 IKLRKAEP 80 (87)
T ss_pred EEEEeCCC
Confidence 99999754
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.75 E-value=0.00061 Score=47.55 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=65.6
Q ss_pred ccceEEcCCEEEEEEeeEEEcCCCCC---CCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEE-CCCCCCcCceEEEEeC
Q 042976 14 RCRWRREEHQFMLSFSYYYMVVGFKK---DQIRVFVNDQGKLRISGKRPIDENNVESFSKRIE-VPKDCKSDRIKAKLSN 89 (163)
Q Consensus 14 ~~di~e~~~~y~l~f~v~~dlPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~-LP~~vd~~~i~A~~~n 89 (163)
.++|.++++...|. +.+|+..+ +++.|... .+.|.|.+.... ...|.-.+. |-..|+++..+.++..
T Consensus 3 ~y~W~Qt~~~V~i~----i~~~~~~~~~~~~v~v~~~-~~~l~v~~~~~~----~~~~~~~~~~L~~~I~~e~s~~~~~~ 73 (92)
T cd06468 3 KYAWDQSDKFVKIY----ITLKGVHQLPKENIQVEFT-ERSFELKVHDLN----GKNYRFTINRLLKKIDPEKSSFKVKT 73 (92)
T ss_pred eeeeecCCCEEEEE----EEccCCCcCCcccEEEEec-CCEEEEEEECCC----CcEEEEEehHhhCccCccccEEEEeC
Confidence 46899999999999 99999987 99999999 899999874311 124555664 8899999999999999
Q ss_pred CEEEEEeeccCC
Q 042976 90 GILRLTMPKKTH 101 (163)
Q Consensus 90 GvL~I~~PK~~~ 101 (163)
+-+.|++.|..+
T Consensus 74 ~ki~i~L~K~~~ 85 (92)
T cd06468 74 DRIVITLAKKKE 85 (92)
T ss_pred CEEEEEEEeCCC
Confidence 999999999764
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.73 E-value=0.00054 Score=47.59 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred cceEEcCCEEEEEEeeEEEcC-CCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCC-EE
Q 042976 15 CRWRREEHQFMLSFSYYYMVV-GFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNG-IL 92 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nG-vL 92 (163)
++|.++.+...|. +.+| |++++|++|.+. .+.|.|..... ..+ -.-.|...|+++...-.+.+| .|
T Consensus 1 Y~W~Qt~~~V~v~----i~~p~~~~~~dv~v~~~-~~~l~v~~~~~------~~~-~~g~L~~~I~~d~Stw~i~~~~~l 68 (85)
T cd06493 1 YYWQQTEEDLTLT----IRLPEDTTKEDIRIKFL-PDHISIALKDQ------APL-LEGKLYSSIDHESSTWIIKENKSL 68 (85)
T ss_pred CccEEeCCEEEEE----EECCCCCChhhEEEEEe-cCEEEEEeCCC------CeE-EeCcccCcccccCcEEEEeCCCEE
Confidence 4799999999999 9995 999999999999 89998874210 112 344788999999988888766 79
Q ss_pred EEEeeccCC
Q 042976 93 RLTMPKKTH 101 (163)
Q Consensus 93 ~I~~PK~~~ 101 (163)
.|.+.|..+
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06493 69 EVSLIKKDE 77 (85)
T ss_pred EEEEEECCC
Confidence 999999754
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.30 E-value=0.0048 Score=44.08 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=61.0
Q ss_pred CccceEEcCCEEEEEEeeEEEcC-CCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVV-GFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGI 91 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGv 91 (163)
+.+.|.++.+...|. +.|| |.++.|+.|.+. .+.|.|.-+.. --+. =.|...|+++...-++++|-
T Consensus 6 ~~y~W~QT~~eV~v~----i~lp~~~~~kdv~V~i~-~~~l~V~~~g~------~~l~--G~L~~~I~~destWtled~k 72 (93)
T cd06494 6 PWGCWYQTMDEVFIE----VNVPPGTRAKDVKCKLG-SRDISLAVKGQ------EVLK--GKLFDSVVADECTWTLEDRK 72 (93)
T ss_pred CCcEEEeEcCEEEEE----EECCCCCceeeEEEEEE-cCEEEEEECCE------EEEc--CcccCccCcccCEEEEECCc
Confidence 568999999999999 8886 999999999999 88888874211 0111 16889999999999999775
Q ss_pred -EEEEeeccCC
Q 042976 92 -LRLTMPKKTH 101 (163)
Q Consensus 92 -L~I~~PK~~~ 101 (163)
|.|.+.|...
T Consensus 73 ~l~I~L~K~~~ 83 (93)
T cd06494 73 LIRIVLTKSNR 83 (93)
T ss_pred EEEEEEEeCCC
Confidence 8999999653
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.25 E-value=0.007 Score=44.22 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=63.9
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGIL 92 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL 92 (163)
|.++|.+..+...|+ +.+|+ .+|++|.+. ++.|.++|... .+ ..+.-.+.|=..|+++..+-+...--+
T Consensus 2 p~v~WaQr~~~V~lt----I~v~d--~~d~~v~l~-~~~l~f~~~~~-~g---~~y~~~l~l~~~I~pe~Sk~~v~~r~v 70 (106)
T cd00237 2 AKTLWYDRRDYVFIE----FCVED--SKDVKVDFE-KSKLTFSCLNG-DN---VKIYNEIELYDRVDPNDSKHKRTDRSI 70 (106)
T ss_pred CcceeeECCCEEEEE----EEeCC--CCCcEEEEe-cCEEEEEEECC-CC---cEEEEEEEeecccCcccCeEEeCCceE
Confidence 789999999998888 99999 689999999 89999998442 21 236677888899999987777777778
Q ss_pred EEEeeccCC
Q 042976 93 RLTMPKKTH 101 (163)
Q Consensus 93 ~I~~PK~~~ 101 (163)
.|.+.|..+
T Consensus 71 e~~L~K~~~ 79 (106)
T cd00237 71 LCCLRKGKE 79 (106)
T ss_pred EEEEEeCCC
Confidence 888988753
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.83 E-value=0.0086 Score=51.90 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=67.5
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGIL 92 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL 92 (163)
++++|+++++..+|. +.+.|+.++++.|.+. ++.|.|+-.... ...|...+.|-..|+++..+.++...-+
T Consensus 157 ~r~dWyQs~~~V~i~----i~~k~~~~~~~~v~~~-~~~l~v~~~~~~----~~~y~~~~~L~~~I~p~~s~~~v~~~Ki 227 (356)
T PLN03088 157 YRHEFYQKPEEVVVT----VFAKGVPAENVNVDFG-EQILSVVIEVPG----EDAYHLQPRLFGKIIPDKCKYEVLSTKI 227 (356)
T ss_pred cccceeecCCEEEEE----EEecCCChHHcEEEee-cCEEEEEEecCC----CcceeecccccccccccccEEEEecceE
Confidence 568999999999999 9999999999999999 888988865431 1346667889999999998888888899
Q ss_pred EEEeeccCC
Q 042976 93 RLTMPKKTH 101 (163)
Q Consensus 93 ~I~~PK~~~ 101 (163)
.|+|.|..+
T Consensus 228 ei~l~K~~~ 236 (356)
T PLN03088 228 EIRLAKAEP 236 (356)
T ss_pred EEEEecCCC
Confidence 999988754
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.42 E-value=0.094 Score=36.64 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=55.6
Q ss_pred cceEEcCCEEEEEEeeEEEcCCCCCCC--EEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEe--CC
Q 042976 15 CRWRREEHQFMLSFSYYYMVVGFKKDQ--IRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLS--NG 90 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlPG~~~ed--i~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~--nG 90 (163)
+||+++++..+|. +...+....+ +.+... .+.|.|+-... ...|...+.|-..++++. +.++. -|
T Consensus 1 ~DWyQt~~~Vtit----iy~K~~~~~~~~v~v~~~-~~~l~v~~~~~-----~~~~~~~~~L~~~I~~~~-~~~~~~~~~ 69 (87)
T cd06490 1 YDWFQTDSEVTIV----VYTKSKGNPADIVIVDDQ-QRELRVEIILG-----DKSYLLHLDLSNEVQWPC-EVRISTETG 69 (87)
T ss_pred CCceECCCEEEEE----EEEcccCCCCccEEEECC-CCEEEEEEECC-----CceEEEeeeccccCCCCc-EEEEcccCc
Confidence 4899999999999 8888654444 445545 56788875433 133778889989998775 55555 88
Q ss_pred EEEEEeeccCC
Q 042976 91 ILRLTMPKKTH 101 (163)
Q Consensus 91 vL~I~~PK~~~ 101 (163)
-+.|++.|.++
T Consensus 70 KVEI~L~K~e~ 80 (87)
T cd06490 70 KIELVLKKKEP 80 (87)
T ss_pred eEEEEEEcCCC
Confidence 99999999764
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.36 E-value=0.016 Score=46.44 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=65.2
Q ss_pred CCccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCE
Q 042976 12 EPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGI 91 (163)
Q Consensus 12 ~P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGv 91 (163)
.+++||++++...+|. +-.+|+.++|++|.+. +++|.+..+-.. ...|.-...|-..|.++..+-+.----
T Consensus 3 k~r~DwyQt~~~vvIt----i~~k~v~~~~v~v~~s-~~~l~~~~~~~~----g~~~~l~~~L~~~I~pe~~s~k~~stK 73 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVIT----IFAKNVPKEDVNVEIS-ENTLSIVIQLPS----GSEYNLQLKLYHEIIPEKSSFKVFSTK 73 (196)
T ss_pred cccceeecCCceEEEE----EEecCCCccceeEEee-cceEEEEEecCC----chhhhhhHHhcccccccceeeEeeeee
Confidence 3678999999999999 9999999999999999 899988855542 134666666888899998666666788
Q ss_pred EEEEeeccC
Q 042976 92 LRLTMPKKT 100 (163)
Q Consensus 92 L~I~~PK~~ 100 (163)
+.|+++|..
T Consensus 74 VEI~L~K~~ 82 (196)
T KOG1309|consen 74 VEITLAKAE 82 (196)
T ss_pred EEEEecccc
Confidence 899999843
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.87 E-value=0.16 Score=35.61 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=56.8
Q ss_pred cceEEcCCEEEEEEeeEEEcC-C--CCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCC-
Q 042976 15 CRWRREEHQFMLSFSYYYMVV-G--FKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNG- 90 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nG- 90 (163)
+.|.++.++..|. +.|| | +++.|++|.+. .+.|.|.-+.. ..--.=.|...|+++...-.+++|
T Consensus 1 Y~W~QT~~ev~v~----v~l~~~~~~~~kdv~v~i~-~~~l~v~~~g~-------~~~i~G~L~~~V~~des~Wtled~~ 68 (87)
T cd06492 1 YRWTQTLSEVELK----VPFKVSFRLKGKDVVVDIQ-RKHLKVGLKGQ-------PPIIDGELYNEVKVEESSWLIEDGK 68 (87)
T ss_pred CccEeecCEEEEE----EECCCCCCccceEEEEEEe-cCEEEEEECCC-------ceEEeCcccCcccccccEEEEeCCC
Confidence 3578888888888 8885 3 89999999999 78888863211 111223678899999988999986
Q ss_pred EEEEEeeccC
Q 042976 91 ILRLTMPKKT 100 (163)
Q Consensus 91 vL~I~~PK~~ 100 (163)
.|.|++-|..
T Consensus 69 ~l~i~L~K~~ 78 (87)
T cd06492 69 VVTVNLEKIN 78 (87)
T ss_pred EEEEEEEECC
Confidence 8999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.59 E-value=0.23 Score=36.08 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=59.5
Q ss_pred CccceEEcCCEEEEEEeeEEEcC-CC-CCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCC
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVV-GF-KKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNG 90 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nG 90 (163)
+.+.|.++.++..|. +.|| |. +..||.|.+. .+.|.|.-+....+ ..+ -.=.|+..|+++.-...+++|
T Consensus 5 e~Y~WtQTl~eV~V~----i~lp~~~~~~kdv~v~i~-~~~l~v~~~~~~~~---~~~-i~G~L~~~V~~des~Wtled~ 75 (102)
T cd06495 5 ENYTWSQDYTDVEVR----VPVPKDVVKGRQVSVDLQ-SSSIRVSVRDGGGE---KVL-MEGEFTHKINTENSLWSLEPG 75 (102)
T ss_pred CceEEEeECCeEEEE----EECCCCCccceEEEEEEE-cCEEEEEEecCCCC---ceE-EeCcccCcccCccceEEEeCC
Confidence 567899999999999 9998 54 6789999999 88888875321100 011 111588899999989999985
Q ss_pred -EEEEEeeccC
Q 042976 91 -ILRLTMPKKT 100 (163)
Q Consensus 91 -vL~I~~PK~~ 100 (163)
.|.|++-|..
T Consensus 76 ~~l~I~L~K~~ 86 (102)
T cd06495 76 KCVLLSLSKCS 86 (102)
T ss_pred CEEEEEEEECC
Confidence 5899999964
No 42
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=83.23 E-value=7.3 Score=33.19 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=71.4
Q ss_pred ccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEE
Q 042976 14 RCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILR 93 (163)
Q Consensus 14 ~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~ 93 (163)
+.||-.+++..+|. +..-|.-++.-.|..+ +.+|.|.-.... ...+|...+.|=.-|+++..++.+..--+.
T Consensus 216 R~Dwhqt~~~Vti~----VY~k~~lpe~s~iean-~~~l~V~ivf~~---gna~fd~d~kLwgvvnve~s~v~m~~tkVE 287 (320)
T KOG1667|consen 216 RHDWHQTNGFVTIN----VYAKGALPETSNIEAN-GTTLHVSIVFGF---GNASFDLDYKLWGVVNVEESSVVMGETKVE 287 (320)
T ss_pred hhhhhhcCCeEEEE----EEeccCCcccceeeeC-CeEEEEEEEecC---CCceeeccceeeeeechhhceEEeecceEE
Confidence 47899999999999 8888888988889988 888888866542 246788889998889999999999999999
Q ss_pred EEeeccCCCCceeee
Q 042976 94 LTMPKKTHSHVTRNQ 108 (163)
Q Consensus 94 I~~PK~~~~~~~~i~ 108 (163)
|+|+|.++..=..+.
T Consensus 288 Isl~k~ep~sWa~Le 302 (320)
T KOG1667|consen 288 ISLKKAEPGSWARLE 302 (320)
T ss_pred EEEeccCCCCccccc
Confidence 999998775433333
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=15 Score=29.46 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=59.0
Q ss_pred CCCccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCC
Q 042976 11 FEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNG 90 (163)
Q Consensus 11 ~~P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nG 90 (163)
..|.+-|.+..+-..|+ +.|+. ..+.+|.++ ...|+++|+.... ...+...|.|=..||++.++-+-. +
T Consensus 6 ~~p~v~Waqr~~~vylt----v~Ved--~~d~~v~~e-~~~l~fs~k~~~d---~~~~~~~ief~~eIdpe~sk~k~~-~ 74 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLT----VCVED--AKDVHVNLE-PSKLTFSCKSGAD---NHKYENEIEFFDEIDPEKSKHKRT-S 74 (180)
T ss_pred cCCcchhhhhcCeEEEE----EEecc--Cccceeecc-ccEEEEEeccCCC---ceeeEEeeehhhhcCHhhcccccc-c
Confidence 34889999998888888 77775 457777888 7899999988632 345667799999999999877777 6
Q ss_pred EEEEEeecc
Q 042976 91 ILRLTMPKK 99 (163)
Q Consensus 91 vL~I~~PK~ 99 (163)
-+...++++
T Consensus 75 r~if~i~~K 83 (180)
T KOG3158|consen 75 RSIFCILRK 83 (180)
T ss_pred eEEEEEEEc
Confidence 555555544
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=74.60 E-value=7.9 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=28.7
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeeccC
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKT 100 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 100 (163)
..|.-...|| +++.+.|+-++.||.|+|..-+..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 3566678898 679999999999999999998754
No 45
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=72.78 E-value=35 Score=27.37 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCccceEEcCCEEEEEEeeEEEcC-CC-CCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeC
Q 042976 12 EPRCRWRREEHQFMLSFSYYYMVV-GF-KKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSN 89 (163)
Q Consensus 12 ~P~~di~e~~~~y~l~f~v~~dlP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~n 89 (163)
.+.+.|..+=....|. +.|| |+ +..+|.+.+. ...|.|.-+... ---.=.|...|+.+.....+++
T Consensus 18 ~~~y~W~QtL~EV~i~----i~vp~~~~ksk~v~~~Iq-~~hI~V~~kg~~-------~ildG~L~~~vk~des~WtiEd 85 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQ----IPVPPGTAKSKDVHCSIQ-SKHIKVGLKGQP-------PILDGELSHSVKVDESTWTIED 85 (179)
T ss_pred ccceeeeeehhheEEE----eecCCCCcccceEEEEee-eeEEEEecCCCC-------ceecCccccccccccceEEecC
Confidence 3668899888888888 8884 88 8899999999 787777633321 1222347788999999999999
Q ss_pred CEEEEEeeccCC
Q 042976 90 GILRLTMPKKTH 101 (163)
Q Consensus 90 GvL~I~~PK~~~ 101 (163)
|.+.|.+-++..
T Consensus 86 ~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 86 GKMIVILLKKSN 97 (179)
T ss_pred CEEEEEEeeccc
Confidence 988888766543
No 46
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=66.54 E-value=15 Score=25.08 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=28.1
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeec
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPK 98 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 98 (163)
..|.-.+.|| +++++.|+-++.+|.|+|..-+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4677789998 7899999999999999999865
No 47
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=64.75 E-value=33 Score=27.28 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=36.0
Q ss_pred EcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 33 MVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 33 dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
..|=.=|++++|+++ ++.++|+|.. |...+.|.-| .++..++||.|.|...
T Consensus 7 ~~pI~IP~~V~v~i~-~~~v~VkGp~-------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 7 REEIEIPEGVTVEIE-GLVVTVKGPK-------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cccEEcCCCCEEEEE-CCEEEEECCC-------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 334344789999999 8999999877 5566655322 3556678888888755
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=64.27 E-value=14 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.3
Q ss_pred EEeeEEEcC-CCCCCCEEEEE-EeCCEEEEEEE
Q 042976 27 SFSYYYMVV-GFKKDQIRVFV-NDQGKLRISGK 57 (163)
Q Consensus 27 ~f~v~~dlP-G~~~edi~V~v-~~~~~L~I~g~ 57 (163)
.|+=.+.|| +++.+.|+=++ . +|.|.|+|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~-dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCH-DGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcC-CCEEEEEec
Confidence 566679998 99999999987 6 899999985
No 49
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=63.55 E-value=19 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.3
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeeccCC
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKTH 101 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 101 (163)
..|.-.+.||. ++.+.|+-.+.+|.|+|+..+...
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEEECCEEEEEEEEccc
Confidence 45777799994 899999999999999999876543
No 50
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=63.41 E-value=19 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.7
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeecc
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 99 (163)
..|.-.+.|| +++++.|+-++.+|.|+|..-+.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 4678889998 78999999999999999998764
No 51
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.98 E-value=4.8 Score=34.74 Aligned_cols=79 Identities=11% Similarity=0.001 Sum_probs=56.9
Q ss_pred cceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEE
Q 042976 15 CRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRL 94 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I 94 (163)
++|.++.....|- +.-|-++.++|++.+. +|+|.|+-+-+.. .--|.-..+|-..|+++..+-+.---.+.|
T Consensus 179 yd~s~Ts~t~~if----iy~~pv~deqVs~~~e-~NTL~I~~q~~~~---~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~ 250 (368)
T COG5091 179 YDFSETSDTAIIF----IYRPPVGDEQVSPVLE-GNTLSISYQPRRL---RLWNDITISLYKEVYPDIRSIKSFSKRVEV 250 (368)
T ss_pred eeccccceeEEEE----EecCCCCccccceeec-CCcceeeeecccc---chHHHhhhhhhhhcCcchhhhhhcchhhee
Confidence 5555666555555 7779999999999999 9999998655421 122445677778899988766655678888
Q ss_pred EeeccCC
Q 042976 95 TMPKKTH 101 (163)
Q Consensus 95 ~~PK~~~ 101 (163)
.+.|...
T Consensus 251 ~l~KV~~ 257 (368)
T COG5091 251 HLRKVEM 257 (368)
T ss_pred hhhhhhh
Confidence 8877543
No 52
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=62.81 E-value=18 Score=24.44 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=29.9
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeeccC
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKT 100 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 100 (163)
..|.-.+.||. +.++.|+-.+.++.|+|..-+..
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 36888899995 89999999999999999998754
No 53
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=62.63 E-value=41 Score=26.44 Aligned_cols=45 Identities=9% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 39 KDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 39 ~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
|++++|+++ ++.|+|+|.. |...+.+. |. .+....++|.|.|..+
T Consensus 7 P~~V~v~i~-~~~i~vkGp~-------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIE-GNIVTVKGPK-------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEe-CCEEEEECCC-------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 688999999 8999999877 55665553 32 3555678888888854
No 54
>PF14913 DPCD: DPCD protein family
Probab=61.77 E-value=76 Score=25.75 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=47.5
Q ss_pred cCCEEEEEEeeEE-EcCCCCCCCEEEEEEe-CCEEEEEEEeeccCCceeeEEEEEECCC----C--CCcCceEEEEeCCE
Q 042976 20 EEHQFMLSFSYYY-MVVGFKKDQIRVFVND-QGKLRISGKRPIDENNVESFSKRIEVPK----D--CKSDRIKAKLSNGI 91 (163)
Q Consensus 20 ~~~~y~l~f~v~~-dlPG~~~edi~V~v~~-~~~L~I~g~~~~~~~~~g~F~r~~~LP~----~--vd~~~i~A~~~nGv 91 (163)
+...|.-+ + +|| +.++-.+|+++. ++.++|+-.. ..|.++|.+|+ + .+.+.++....|..
T Consensus 94 Tk~~fqWR----IRNLP-YP~dvYsVtvd~~~r~ivvRTtN-------KKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNT 161 (194)
T PF14913_consen 94 TKTSFQWR----IRNLP-YPKDVYSVTVDEDERCIVVRTTN-------KKYYKKFSIPDLDRCGLPLEQSALSFAHQNNT 161 (194)
T ss_pred CccceEEE----EccCC-CCccceEEEEcCCCcEEEEECcC-------ccceeEecCCcHHhhCCCcchhhceeeeecCe
Confidence 33555444 4 344 577888899982 3468887332 46999999994 2 35666778888999
Q ss_pred EEEEeecc
Q 042976 92 LRLTMPKK 99 (163)
Q Consensus 92 L~I~~PK~ 99 (163)
|.|+..|.
T Consensus 162 LIIsYkKP 169 (194)
T PF14913_consen 162 LIISYKKP 169 (194)
T ss_pred EEEEecCc
Confidence 99999874
No 55
>PRK10743 heat shock protein IbpA; Provisional
Probab=60.39 E-value=23 Score=26.82 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCcCceEEEEeCCEEEEEeeccC
Q 042976 68 FSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKT 100 (163)
Q Consensus 68 F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 100 (163)
|.-...|| +++.+.|.-++++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44447888 789999999999999999986543
No 56
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=59.17 E-value=47 Score=26.13 Aligned_cols=44 Identities=16% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 39 KDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 39 ~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
|++++|+++ ++.|+|+|.. |...+.| |.. +....+++.|.|...
T Consensus 11 P~~V~v~~~-~~~v~v~Gp~-------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTID-GNVVTVKGPK-------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEe-CCEEEEEcCC-------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 689999999 8999999876 5566555 443 445667887777754
No 57
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=56.36 E-value=45 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=36.6
Q ss_pred EEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 32 YMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 32 ~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
...|=-=|++++|+++ ++.|.|+|.. |...+.| |... ..+....+||.|.|.-+
T Consensus 6 ~~~~I~IP~~V~V~i~-~~~v~VkGp~-------G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 6 SSEKIRIPEGVTVTVK-SRKVTVTGKY-------GELTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCEecCCCCEEEEE-CCEEEEECCC-------ceEEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 3344344799999999 8999999876 5566555 3211 24566678888777754
No 58
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=56.24 E-value=50 Score=26.01 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=32.2
Q ss_pred CCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 39 KDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 39 ~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
|++++|+++ ++.|+|+|.. |...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~-~~~v~vkGp~-------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTIN-GNVVTVKGPK-------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCC-------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 689999999 8999999876 5566666 443 344567887777654
No 59
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=56.05 E-value=24 Score=24.27 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=27.8
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeecc
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 99 (163)
..|.-.+.|| ++.++.|+-++.||.|+|..-+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4677788887 57899999999999999999653
No 60
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=55.78 E-value=26 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCCCCCCEEEEEEeCCEEEEEEEeecc
Q 042976 35 VGFKKDQIRVFVNDQGKLRISGKRPID 61 (163)
Q Consensus 35 PG~~~edi~V~v~~~~~L~I~g~~~~~ 61 (163)
+++...+|+|.+. ++.+.++|.-...
T Consensus 12 ~~~~~~~i~v~v~-~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVE-NGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEE-CTEEEEEEEESSC
T ss_pred cccCCCeEEEEEE-CCEEEEEeeCcHH
Confidence 4677789999999 9999999998654
No 61
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=55.72 E-value=36 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=27.2
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeecc
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 99 (163)
.+|.-.+.|| +++.+.++-++.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4677789999 77999999999999999999876
No 62
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=55.39 E-value=21 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=32.6
Q ss_pred EEEcC-CCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECC
Q 042976 31 YYMVV-GFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVP 75 (163)
Q Consensus 31 ~~dlP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP 75 (163)
+.-|| |++++.|.=.+.++|.|+|+|........ +.|.+++.
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~---~er~ipI~ 162 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD---NERSIPIE 162 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCcCc---cceEEeEe
Confidence 46787 99999999999889999999988764322 55666554
No 63
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=55.38 E-value=83 Score=23.25 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=34.6
Q ss_pred CEEEEEEeCCEEEEEEEeeccC-Cc-------eeeEEEEEECCCCCCcCceEEEEeCCEEEEE
Q 042976 41 QIRVFVNDQGKLRISGKRPIDE-NN-------VESFSKRIEVPKDCKSDRIKAKLSNGILRLT 95 (163)
Q Consensus 41 di~V~v~~~~~L~I~g~~~~~~-~~-------~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~ 95 (163)
.+++..+ ++.|.|+.+..... .. ...-.-.+.||.....+.++....+|-++|.
T Consensus 86 ~~~~~~~-~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISVE-GGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEEc-CCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEeccccEEEE
Confidence 5778888 89999987732210 00 1223346777877777777777777766654
No 64
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=55.06 E-value=67 Score=24.29 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=43.5
Q ss_pred CCccceEEcC--CEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCce--EEEE
Q 042976 12 EPRCRWRREE--HQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRI--KAKL 87 (163)
Q Consensus 12 ~P~~di~e~~--~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i--~A~~ 87 (163)
.|.++|...+ .+|... +..|.-...+|+.-.|+..-.... ......|++.+|-.|..+.| .+-+
T Consensus 19 ~p~~dWtde~i~qG~a~~-----------~g~VsFeai~D~~a~V~v~~~~~~-~~~~~~R~i~VPF~V~~d~i~V~Svl 86 (125)
T PF11033_consen 19 PPYIDWTDEDIEQGYAWA-----------DGAVSFEAISDGAAEVEVTLNEKF-EAEDAQRTISVPFTVKGDGIEVSSVL 86 (125)
T ss_pred CcccccCHhHHhCcceec-----------CCcEEEeeecCCeEEEEEEeCCcc-cCccceEEEEeeEEEcCCCEEEEEee
Confidence 3678998876 666433 333444433344433333322221 23567899999988766664 5555
Q ss_pred eCCEEEEEeecc
Q 042976 88 SNGILRLTMPKK 99 (163)
Q Consensus 88 ~nGvL~I~~PK~ 99 (163)
++ .|.+.+|+.
T Consensus 87 s~-~~~~~ip~G 97 (125)
T PF11033_consen 87 SE-KLSFDIPKG 97 (125)
T ss_pred cC-cEEEecCCC
Confidence 66 588888863
No 65
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=54.63 E-value=33 Score=23.63 Aligned_cols=32 Identities=9% Similarity=0.282 Sum_probs=27.3
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeec
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPK 98 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 98 (163)
..|.-.+.|| +++++.|+-++.+|.|+|+.-+
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4577778887 5789999999999999999865
No 66
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=53.66 E-value=19 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.2
Q ss_pred EEEcCCCCCCCEEEEEEeCCEEEEEE
Q 042976 31 YYMVVGFKKDQIRVFVNDQGKLRISG 56 (163)
Q Consensus 31 ~~dlPG~~~edi~V~v~~~~~L~I~g 56 (163)
.+.||.+.++.++-++. +|.|.|+-
T Consensus 67 ~~~lp~v~~~~i~A~~~-dGvL~I~l 91 (93)
T cd06471 67 SFYLPNVDEEEIKAKYE-NGVLKITL 91 (93)
T ss_pred EEECCCCCHHHCEEEEE-CCEEEEEE
Confidence 38899999999999998 99999973
No 67
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=51.74 E-value=29 Score=24.50 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=25.9
Q ss_pred EEeeEEEcC-CCCCCCEEEEEEeCCEEEEEEE
Q 042976 27 SFSYYYMVV-GFKKDQIRVFVNDQGKLRISGK 57 (163)
Q Consensus 27 ~f~v~~dlP-G~~~edi~V~v~~~~~L~I~g~ 57 (163)
.|.=.+.|| +++.+.|+=.+..+|.|+|++.
T Consensus 59 ~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 59 NFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 355559998 9999999999987899999863
No 68
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=51.56 E-value=43 Score=21.83 Aligned_cols=35 Identities=17% Similarity=0.500 Sum_probs=30.0
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeeccCC
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKTH 101 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 101 (163)
..|.-.+.||. ++++.++-++.++.|.|+.-+...
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEecc
Confidence 46778899997 899999999999999999877543
No 69
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=48.82 E-value=22 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.2
Q ss_pred EeeEEEcC-CCCCCCEEEEE-EeCCEEEEEEE
Q 042976 28 FSYYYMVV-GFKKDQIRVFV-NDQGKLRISGK 57 (163)
Q Consensus 28 f~v~~dlP-G~~~edi~V~v-~~~~~L~I~g~ 57 (163)
|+=.+.|| +++++.|+-.+ . +|.|+|++-
T Consensus 56 F~R~~~LP~~Vd~~~i~A~~~~-dGvL~I~~P 86 (87)
T cd06481 56 FVREAQLPEHVDPEAVTCSLSP-SGHLHIRAP 86 (87)
T ss_pred EEEEEECCCCcChHHeEEEeCC-CceEEEEcC
Confidence 44449998 89999999999 6 999999853
No 70
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=48.34 E-value=48 Score=25.32 Aligned_cols=32 Identities=6% Similarity=0.209 Sum_probs=26.5
Q ss_pred eEEEEEECCCCCCcCceEEEEeCCEEEEEeecc
Q 042976 67 SFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99 (163)
Q Consensus 67 ~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 99 (163)
.|.-...|| +++.+.|.-.+++|.|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 355558888 67999999999999999999754
No 71
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=48.28 E-value=63 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.423 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 39 KDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 39 ~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
|++++|+++ ++.|+|+|.. |...+ .||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~-~~~v~vkGp~-------G~l~~--~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSID-DQIIKVKGPK-------GTLSR--KIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCC-------EEEEE--ECCCC-----eEEEEeCCEEEEEcC
Confidence 688999999 8999999876 44444 44543 445667887777654
No 72
>PRK10568 periplasmic protein; Provisional
Probab=47.58 E-value=1.4e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.3
Q ss_pred cCCCCCCCEEEEEEeCCEEEEEEEeecc
Q 042976 34 VVGFKKDQIRVFVNDQGKLRISGKRPID 61 (163)
Q Consensus 34 lPG~~~edi~V~v~~~~~L~I~g~~~~~ 61 (163)
-++++..+|+|.+. ++.+.++|.-...
T Consensus 72 ~~~i~~~~I~V~v~-~G~V~L~G~V~s~ 98 (203)
T PRK10568 72 HDNIKSTDISVKTH-QKVVTLSGFVESQ 98 (203)
T ss_pred CCCCCCCceEEEEE-CCEEEEEEEeCCH
Confidence 36788889999999 9999999999754
No 73
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=46.58 E-value=44 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=27.0
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeec
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPK 98 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 98 (163)
..|.-.+.|| +++++.|+-++.+|.|+|..-+
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4577778886 6799999999999999999854
No 74
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=44.15 E-value=83 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 38 KKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 38 ~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
=|++++|+++ ++.|+|+|.. |...+.+ |.. + =.+....++|.|.|.-+
T Consensus 11 IP~~V~V~i~-~~~ItVkGpk-------G~Ls~~~--~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 11 IPEDVTVSVK-DRIVTVKGKR-------GTLTKDL--RHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCCEEEEe-CCEEEEECCC-------cEEEEEc--CCC-C-cEEEEEecCCEEEEEeC
Confidence 3789999999 8999999877 4455443 431 1 12455666787777743
No 75
>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.
Probab=43.29 E-value=11 Score=23.01 Aligned_cols=10 Identities=50% Similarity=1.424 Sum_probs=8.5
Q ss_pred eeeeecccee
Q 042976 147 CFFNIGETWR 156 (163)
Q Consensus 147 ~~~~~~~~~~ 156 (163)
=||.||++|.
T Consensus 10 ~~Y~ige~W~ 19 (43)
T cd00061 10 VFYRVGETWE 19 (43)
T ss_pred cEEeCCCEEE
Confidence 4799999995
No 76
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=42.26 E-value=36 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=24.6
Q ss_pred CEEEEEEeeEEEcC-CCCCCCEEEEEEeCCEEEEEE
Q 042976 22 HQFMLSFSYYYMVV-GFKKDQIRVFVNDQGKLRISG 56 (163)
Q Consensus 22 ~~y~l~f~v~~dlP-G~~~edi~V~v~~~~~L~I~g 56 (163)
..|.-. +.|| ++.++.++-.+. +|.|.|+-
T Consensus 60 g~f~r~----i~LP~~v~~~~i~A~~~-nGvL~I~l 90 (92)
T cd06472 60 GRFVRR----FRLPENADADEVKAFLE-NGVLTVTV 90 (92)
T ss_pred cEEEEE----EECCCCCCHHHCEEEEE-CCEEEEEe
Confidence 455555 9998 789999999999 99999973
No 77
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=40.79 E-value=80 Score=21.66 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=28.0
Q ss_pred eeEEEEEECCCCCCcCceEEEEeCCEEEEEeecc
Q 042976 66 ESFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99 (163)
Q Consensus 66 g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 99 (163)
..|.-.+.|| +++++.|+-++.++.|+|+.-+.
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 4677788898 68999999999999999998653
No 78
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=40.53 E-value=43 Score=21.95 Aligned_cols=46 Identities=11% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 39 KDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 39 ~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
|+.++|++. ++.+.+.|... ..++.||..+.. +...+|+.+.+...
T Consensus 2 P~gV~v~~~-~~~i~v~G~~g---------~l~~~~~~~v~v---~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIK-GNIITVKGPKG---------ELSRPIPPGVKV---EIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEE-TTEEEEESSSS---------EEEEEETTTEEE---EEEEETTSEEEEEE
T ss_pred CCcEEEEEe-CcEEEEECCCE---------eEEEECCCCeeE---EEEcCCCceEEEEC
Confidence 577889999 78888886553 345666755322 23355776666654
No 79
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=40.02 E-value=67 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCcCceEEEEeCCEEEEEee
Q 042976 68 FSKRIEVPKDCKSDRIKAKLSNGILRLTMP 97 (163)
Q Consensus 68 F~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 97 (163)
..-.|.+|..++.+.++..+++.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 334578999999999999999988999885
No 80
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=37.94 E-value=1.3e+02 Score=20.63 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCE-----------------EEEEE--eCCEEEEEEEeeccCCceeeEEEEE-ECCCCCCcCceEEEEeCC
Q 042976 31 YYMVVGFKKDQI-----------------RVFVN--DQGKLRISGKRPIDENNVESFSKRI-EVPKDCKSDRIKAKLSNG 90 (163)
Q Consensus 31 ~~dlPG~~~edi-----------------~V~v~--~~~~L~I~g~~~~~~~~~g~F~r~~-~LP~~vd~~~i~A~~~nG 90 (163)
.+++||.++++| .|... ..|.|..+|.... .|...+ .|...-=.=++.+..+||
T Consensus 4 ~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~~~------~f~~~~ls~~~~~i~y~l~i~~kDg 77 (91)
T PF14730_consen 4 VIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEEWL------VFSSSFLSLDRTRINYTLIIDCKDG 77 (91)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEEEE------EEccccccccceEEEEEEEEEEECC
Confidence 478888877654 34432 3556777765532 233221 122111111267778899
Q ss_pred EEEEEeec
Q 042976 91 ILRLTMPK 98 (163)
Q Consensus 91 vL~I~~PK 98 (163)
-.++++-+
T Consensus 78 k~r~~~~~ 85 (91)
T PF14730_consen 78 KYRLTITN 85 (91)
T ss_pred EEEEEEEE
Confidence 99988854
No 81
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=37.59 E-value=33 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=16.7
Q ss_pred CceEEEEeCCEEEEEeeccCCCCceeeeeecC
Q 042976 81 DRIKAKLSNGILRLTMPKKTHSHVTRNQAAAT 112 (163)
Q Consensus 81 ~~i~A~~~nGvL~I~~PK~~~~~~~~i~I~~~ 112 (163)
..|.|.|+||+|+--=|-.- ....++.|.+.
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L-~Eg~~V~i~I~ 33 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDL-PEGEEVKITIE 33 (60)
T ss_dssp --EEEEEETTEEEECS------TTEEEEEEE-
T ss_pred ceEEEEEECCEEEECCCCCC-CCCCEEEEEEe
Confidence 45899999999986544332 23345555553
No 82
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=37.37 E-value=1.1e+02 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.9
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCC-----CCCCEEEEEEeCCEEEEE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGF-----KKDQIRVFVNDQGKLRIS 55 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~-----~~edi~V~v~~~~~L~I~ 55 (163)
|.+.|.++++.|.|. +--+.. +++...|.-+ ++.+-|.
T Consensus 26 P~v~I~r~g~~Y~vt----i~~~~~~~~~~~p~tY~i~~~-~g~~fI~ 68 (95)
T PF12992_consen 26 PDVTIYRNGGSYKVT----ITYRSGYTGRAKPETYPIQEE-DGNLFIE 68 (95)
T ss_pred CCEEEEECCCeEEEE----EEEEcCcCCcccceEEEEEEe-CCEEEEe
Confidence 999999999999988 654443 6667777766 7777665
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=36.18 E-value=1.1e+02 Score=19.68 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=23.9
Q ss_pred cCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEE
Q 042976 20 EEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGK 57 (163)
Q Consensus 20 ~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~ 57 (163)
..+.|.|+ +..+|+.+-.-.|.+..+....|...
T Consensus 33 ~~G~~~v~----v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 33 PPGEHTVT----VEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred CCccEEEE----EEECCCeeEEEEEEECCCCEEEEEEE
Confidence 35777788 88888888777777775556666543
No 84
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=34.83 E-value=1.5e+02 Score=20.12 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeecc--CCceeeEEE--EEECCCCCCcCceEEEEeCC
Q 042976 21 EHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPID--ENNVESFSK--RIEVPKDCKSDRIKAKLSNG 90 (163)
Q Consensus 21 ~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~--~~~~g~F~r--~~~LP~~vd~~~i~A~~~nG 90 (163)
++...|. ..+-||.|.+|.|+...++.....+..... .+..+.|.. .+.++.. +.+...+...+.
T Consensus 14 ~~~~~L~----C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~-~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLS----CHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE-DKARYSCRVEHS 82 (93)
T ss_pred CCcEEEE----EEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC-CCCEEEEEEEeC
Confidence 4567788 999999999999998745543333321111 122345554 5666554 556667766643
No 85
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=31.78 E-value=2e+02 Score=23.01 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCCCcCceEEEEeCCEEEEEe
Q 042976 35 VGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDCKSDRIKAKLSNGILRLTM 96 (163)
Q Consensus 35 PG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 96 (163)
|=.-|++++|+++ ++.++|+|.+ |...+.| +.++ |.-..+|+.+.+..
T Consensus 8 ~i~~P~gV~V~i~-~~~v~vkGpk-------GeL~~~~--~~~~----v~v~~~~~~~vv~~ 55 (178)
T COG0097 8 PIVIPAGVTVSIE-GQVVTVKGPK-------GELTREF--HDNV----VKVEVEDNILVVRP 55 (178)
T ss_pred cEecCCCeEEEEe-ccEEEEECCC-------cEEEEEe--cCcc----eEEEecCCEEEEee
Confidence 4445899999999 8999999876 4445444 2222 34455566555444
No 86
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=31.70 E-value=2.3e+02 Score=23.14 Aligned_cols=79 Identities=9% Similarity=0.211 Sum_probs=53.2
Q ss_pred cceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEE-ECCCCCCcCceEEEEeCCEEE
Q 042976 15 CRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRI-EVPKDCKSDRIKAKLSNGILR 93 (163)
Q Consensus 15 ~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~-~LP~~vd~~~i~A~~~nGvL~ 93 (163)
+-|.++++...+- +.|-|+..|++.|... .+.|-+.-+. ..+. .|.-.+ .|-..++++.-+-...-....
T Consensus 77 ygWDQs~kfVK~y----ItL~GV~eenVqv~ft-p~Sldl~v~d-lqGK---~y~~~vnnLlk~I~vEks~~kvKtd~v~ 147 (224)
T KOG3260|consen 77 YGWDQSNKFVKMY----ITLEGVDEENVQVEFT-PMSLDLKVHD-LQGK---NYRMIVNNLLKPISVEKSSKKVKTDTVL 147 (224)
T ss_pred cCccccCCeeEEE----EEeecccccceeEEec-ccceeeeeee-cCCc---ceeeehhhhccccChhhcccccccceEE
Confidence 6788877777666 9999999999999999 7776655222 1111 232222 244678888877777766777
Q ss_pred EEeeccCCC
Q 042976 94 LTMPKKTHS 102 (163)
Q Consensus 94 I~~PK~~~~ 102 (163)
|.+.|.+..
T Consensus 148 I~~kkVe~~ 156 (224)
T KOG3260|consen 148 ILCKKVENT 156 (224)
T ss_pred Eeehhhhcc
Confidence 788665443
No 87
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=31.33 E-value=1e+02 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.5
Q ss_pred EEEEECCCCCCcCceEEEEeCCEEEEEe
Q 042976 69 SKRIEVPKDCKSDRIKAKLSNGILRLTM 96 (163)
Q Consensus 69 ~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 96 (163)
.-.|+||.++...++...++..-|+|.+
T Consensus 18 ~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 18 FIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3447899999999999999999999988
No 88
>smart00058 FN1 Fibronectin type 1 domain. One of three types of internal repeat within the plasma protein, fibronectin. Found also in coagulation factor XII, HGF activator and tissue-type plasminogen activator. In t-PA and fibronectin, this domain type contributes to fibrin-binding.
Probab=30.96 E-value=24 Score=21.84 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=9.0
Q ss_pred eeeeeecccee
Q 042976 146 QCFFNIGETWR 156 (163)
Q Consensus 146 ~~~~~~~~~~~ 156 (163)
.=+|.||++|.
T Consensus 7 ~~~Y~ige~W~ 17 (45)
T smart00058 7 GTTYRIGDTWE 17 (45)
T ss_pred ccEEecCCEEE
Confidence 45799999995
No 89
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.59 E-value=54 Score=23.70 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.4
Q ss_pred CceEEEEeCCEEEEEee
Q 042976 81 DRIKAKLSNGILRLTMP 97 (163)
Q Consensus 81 ~~i~A~~~nGvL~I~~P 97 (163)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 34667888999999998
No 90
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.12 E-value=69 Score=23.18 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.7
Q ss_pred ceEEEEeCCEEEEEeec
Q 042976 82 RIKAKLSNGILRLTMPK 98 (163)
Q Consensus 82 ~i~A~~~nGvL~I~~PK 98 (163)
.+.+.+.+|||+|+++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 47899999999999964
No 91
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=28.77 E-value=23 Score=20.95 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=11.5
Q ss_pred hhhceeeeeeeecccee
Q 042976 140 VAFKYRQCFFNIGETWR 156 (163)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (163)
.+.+|||+||.=|. |.
T Consensus 4 ~l~~yHP~~~~~G~-W~ 19 (36)
T smart00107 4 LLQKYHPSFWVDGK-WL 19 (36)
T ss_pred cccccCCCceeCCe-Ec
Confidence 35789999996553 63
No 92
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.55 E-value=1.4e+02 Score=22.26 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=25.4
Q ss_pred EeeEEEcC-CCCCCCEEEEEEeCCEEEEEEEeecc
Q 042976 28 FSYYYMVV-GFKKDQIRVFVNDQGKLRISGKRPID 61 (163)
Q Consensus 28 f~v~~dlP-G~~~edi~V~v~~~~~L~I~g~~~~~ 61 (163)
|+=.+.|| +++++.++-+.. +|.|+|+-.+...
T Consensus 102 f~r~~~Lp~~v~~~~~~A~~~-nGvL~I~lpk~~~ 135 (146)
T COG0071 102 FERTFRLPEKVDPEVIKAKYK-NGLLTVTLPKAEP 135 (146)
T ss_pred EEEEEECcccccccceeeEee-CcEEEEEEecccc
Confidence 44449998 668788888888 9999999766554
No 93
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=29 Score=31.52 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCCccceEEcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEeeccCCceeeEEEEEECCCCC-CcCceEEEEe-
Q 042976 11 FEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRIEVPKDC-KSDRIKAKLS- 88 (163)
Q Consensus 11 ~~P~~di~e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~g~F~r~~~LP~~v-d~~~i~A~~~- 88 (163)
..|.+.+..+++...|. +..|-++...+.+... ++.+..+ -+.+.-+..+|..+ |-..-.|+++
T Consensus 2 ltp~f~itqdee~~~L~----I~~p~~~a~~le~~a~-~nm~~f~---------~~pyflrl~~p~~~~~d~~~n~s~d~ 67 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLI----IPRPLNQASKLEIDAA-ANMASFS---------AGPYFLRLAGPGMVEDDARPNASYDA 67 (466)
T ss_pred CCceeeeeecCceEEEE----eeccccchhccchhhH-hhhhhhc---------cchhHHhhcCcchhhhhccccCcccc
Confidence 35778888888888888 8999888888877777 6666655 45566677777663 3333556665
Q ss_pred -CCEEEEEeeccCC
Q 042976 89 -NGILRLTMPKKTH 101 (163)
Q Consensus 89 -nGvL~I~~PK~~~ 101 (163)
+|-..|.+||..+
T Consensus 68 kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 68 KDGYAHVKVPKFHP 81 (466)
T ss_pred ccceeEEeecCCCc
Confidence 8999999999654
No 94
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=27.01 E-value=29 Score=23.35 Aligned_cols=15 Identities=47% Similarity=1.150 Sum_probs=11.1
Q ss_pred ceeeeeeeecc--ceec
Q 042976 143 KYRQCFFNIGE--TWRS 157 (163)
Q Consensus 143 ~~~~~~~~~~~--~~~~ 157 (163)
.+--|.||||+ .||.
T Consensus 50 ~~vicY~s~Gs~E~~R~ 66 (74)
T PF03537_consen 50 KKVICYFSIGSAEDWRP 66 (74)
T ss_dssp -EEEEEEESSEEETTST
T ss_pred CEEEEEEeCceecCCcc
Confidence 67789999995 5665
No 95
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=26.74 E-value=1.7e+02 Score=19.23 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=43.2
Q ss_pred EcCCEEEEEEeeEEEcCCCCCCCEEEEEEeCCEEEEEEEe--eccCCceeeEEE--EEECCCC--CCcCceEEEEeCCEE
Q 042976 19 REEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKR--PIDENNVESFSK--RIEVPKD--CKSDRIKAKLSNGIL 92 (163)
Q Consensus 19 e~~~~y~l~f~v~~dlPG~~~edi~V~v~~~~~L~I~g~~--~~~~~~~g~F~r--~~~LP~~--vd~~~i~A~~~nGvL 92 (163)
..++...|. ..+-||.|.+++|+...++...-.+.. .......|.|.. .+.++.. -+....++...+.-|
T Consensus 11 ~~~~~~~L~----C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLT----CLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEE----EEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 345677788 999999999999998745544433332 122233455664 3445543 256667777776544
No 96
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.27 E-value=3.6e+02 Score=25.04 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=39.0
Q ss_pred eeeEEEEEECCCCCCcCceEEEEe---CCEEEEEeeccCCCCceeeeeecCCCcccc
Q 042976 65 VESFSKRIEVPKDCKSDRIKAKLS---NGILRLTMPKKTHSHVTRNQAAATAGRNTL 118 (163)
Q Consensus 65 ~g~F~r~~~LP~~vd~~~i~A~~~---nGvL~I~~PK~~~~~~~~i~I~~~~~~~~~ 118 (163)
-|.|.-+=-.|.+-..-+|...|+ ||+|+|+.--+....+.+|.|....++-+|
T Consensus 486 LGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~ 542 (663)
T KOG0100|consen 486 LGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTP 542 (663)
T ss_pred cccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCH
Confidence 456665554555555667777776 999999998777777788888877666554
No 97
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.23 E-value=59 Score=23.59 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.0
Q ss_pred eEEEEeCCEEEEEeec
Q 042976 83 IKAKLSNGILRLTMPK 98 (163)
Q Consensus 83 i~A~~~nGvL~I~~PK 98 (163)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6688899999999985
No 98
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.17 E-value=58 Score=23.48 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.8
Q ss_pred eEEEEeCCEEEEEeec
Q 042976 83 IKAKLSNGILRLTMPK 98 (163)
Q Consensus 83 i~A~~~nGvL~I~~PK 98 (163)
+.+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 6678889999999984
No 99
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=25.57 E-value=51 Score=21.60 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=18.2
Q ss_pred CCCCCEEEEEEeCCEEEEEEEe
Q 042976 37 FKKDQIRVFVNDQGKLRISGKR 58 (163)
Q Consensus 37 ~~~edi~V~v~~~~~L~I~g~~ 58 (163)
|+++.|.|... .+.|.|+|+.
T Consensus 23 f~~~~I~l~t~-~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTK-KGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEET-TEEEEEEEEE
T ss_pred ECCCEEEEEeC-CEEEEEECce
Confidence 67888889888 8999999886
No 100
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=24.90 E-value=2.4e+02 Score=20.08 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=28.9
Q ss_pred CccceEEcCCEEEEEEeeEEEcCCCCCC-CEEEEEEeCCEEE
Q 042976 13 PRCRWRREEHQFMLSFSYYYMVVGFKKD-QIRVFVNDQGKLR 53 (163)
Q Consensus 13 P~~di~e~~~~y~l~f~v~~dlPG~~~e-di~V~v~~~~~L~ 53 (163)
|.-.|...++.|.|+ ..++|..|- .|+|.+..++...
T Consensus 8 ~~p~~~~eG~~~tL~----C~v~g~~P~a~L~i~W~rG~~~l 45 (100)
T cd05755 8 PLPSWQPVGKNYTLQ----CDVPGVAPRQNLTVVLLRGNETL 45 (100)
T ss_pred cCCCcccCCCcEEEE----EEEcCcCCCCcEEEEEeeCCEEc
Confidence 445677889999999 999999875 6789987455544
No 101
>PF00039 fn1: Fibronectin type I domain; InterPro: IPR000083 Fibronectin type I repeats are one of the three repeats found in the fibronectin protein. Fibronectin is a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Type I domain (FN1) is approximately 40 residues in length. Four conserved cysteines are involved in disulphide bonds. The 3D structure of the FN1 domain has been determined [, , ]. It consists of two antiparallel beta-sheets, first a double-stranded one, that is linked by a disulphide bond to a triple-stranded beta-sheet. The second conserved disulphide bridge links the C-terminal adjacent strands of the domain. In human tissue plasminogen activator chain A the FN1 domain together with the following epidermal growth factor (EGF)-like domain are involved in fibrin-binding []. It has been suggested that these two modules form a single structural and functional unit []. The two domains keep their specific tertiary structure, but interact intimately to bury a hydrophobic core; the inter-module linker makes up the third strand of the EGF-module's major beta-sheet.; GO: 0005576 extracellular region; PDB: 2RKY_A 1FBR_A 2RL0_D 3M7P_A 3MQL_A 3ZRZ_A 2RKZ_F 2CKU_A 2CG6_A 3CAL_C ....
Probab=24.05 E-value=35 Score=20.34 Aligned_cols=11 Identities=45% Similarity=1.205 Sum_probs=8.9
Q ss_pred eeeeeecccee
Q 042976 146 QCFFNIGETWR 156 (163)
Q Consensus 146 ~~~~~~~~~~~ 156 (163)
+=||.|||+|.
T Consensus 7 ~~~Y~vge~W~ 17 (39)
T PF00039_consen 7 GQFYQVGETWE 17 (39)
T ss_dssp TEEEETTEEEE
T ss_pred ccEEeCCCEEE
Confidence 34789999996
No 102
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=22.36 E-value=43 Score=26.18 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCcCceEEEEeCCEEEEEeec
Q 042976 77 DCKSDRIKAKLSNGILRLTMPK 98 (163)
Q Consensus 77 ~vd~~~i~A~~~nGvL~I~~PK 98 (163)
.++.+.--+.|.||||+|.++-
T Consensus 68 ~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 68 EVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hcCccccccccccceEEEEecC
Confidence 3344445578999999999983
No 103
>PHA02745 hypothetical protein; Provisional
Probab=22.32 E-value=36 Score=28.63 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCCCCCCccceEEcC------CEEEEEEeeEEEcCCCCCC-CEEEEEEeCCEEEEEEEeeccCC------ceeeEEEEEE
Q 042976 7 LPADFEPRCRWRREE------HQFMLSFSYYYMVVGFKKD-QIRVFVNDQGKLRISGKRPIDEN------NVESFSKRIE 73 (163)
Q Consensus 7 ~~~~~~P~~di~e~~------~~y~l~f~v~~dlPG~~~e-di~V~v~~~~~L~I~g~~~~~~~------~~g~F~r~~~ 73 (163)
+|++..+-.|+...+ ...... ++..-++.+ .+..++. +..+.|+-.+..... ....-.++|.
T Consensus 53 l~~~is~~~di~~~~~~~~~~e~~~~~----v~~~e~d~~~~~~~~~r-~~~~~i~~~~h~~~~~~~~~~~~~~~~~~f~ 127 (265)
T PHA02745 53 LFEDISGDLDIRTSTGDYVSEEEHFGR----VDTQEVDEFRGLNAKIR-DKVLPIEDNKHDNSETRNPLNKIRQQIRKFT 127 (265)
T ss_pred HHHhhcCCCCCcccchhHHHHHhhhee----ecccccccccccchhhh-cccccccccccCcccccccchhhhccceeEe
Confidence 455555555554443 233355 666665443 3445555 566666644333221 1123347899
Q ss_pred CCCCCCcCceEEEEe
Q 042976 74 VPKDCKSDRIKAKLS 88 (163)
Q Consensus 74 LP~~vd~~~i~A~~~ 88 (163)
||...|+...+.+++
T Consensus 128 LPPeYDpnDsRWTLK 142 (265)
T PHA02745 128 LPPEYDPNDSRWTLK 142 (265)
T ss_pred cCCCCCCCCCcceee
Confidence 999999999998876
No 104
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=22.12 E-value=1.4e+02 Score=23.46 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=12.3
Q ss_pred EEcCCCCCCCEEEEEEeCCEE
Q 042976 32 YMVVGFKKDQIRVFVNDQGKL 52 (163)
Q Consensus 32 ~dlPG~~~edi~V~v~~~~~L 52 (163)
+.+||+..+.+.++.. ++.|
T Consensus 20 Isvpgv~~~~v~~s~~-ggsl 39 (181)
T PF12080_consen 20 ISVPGVPSNKVPASAT-GGSL 39 (181)
T ss_pred EEeCCCCccccEEEee-CCEE
Confidence 6677777777666655 4333
No 105
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=21.94 E-value=58 Score=23.31 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=12.5
Q ss_pred EEEEeCCEEEEEeec
Q 042976 84 KAKLSNGILRLTMPK 98 (163)
Q Consensus 84 ~A~~~nGvL~I~~PK 98 (163)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 567789999999964
No 106
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=21.43 E-value=46 Score=19.13 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=7.9
Q ss_pred ceeeeeeeecccee
Q 042976 143 KYRQCFFNIGETWR 156 (163)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (163)
.|||+||. +..|.
T Consensus 2 ~yHPg~~~-~g~W~ 14 (32)
T PF00779_consen 2 KYHPGAWR-GGKWL 14 (32)
T ss_dssp EE-SS-EE-TTCES
T ss_pred CcCCCccc-CCcCc
Confidence 59999998 55564
No 107
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=21.14 E-value=2.9e+02 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=25.7
Q ss_pred CEEEEEEeeEEEcCCC---CCCCEEEEEEeCCEEEEEEEe
Q 042976 22 HQFMLSFSYYYMVVGF---KKDQIRVFVNDQGKLRISGKR 58 (163)
Q Consensus 22 ~~y~l~f~v~~dlPG~---~~edi~V~v~~~~~L~I~g~~ 58 (163)
+.|++. +.+|.+ ....++|.+..|+.+.=+...
T Consensus 49 N~yt~~----~~aPd~~~~pag~V~v~v~~~g~~~~~~~i 84 (142)
T PF14545_consen 49 NPYTLQ----FKAPDFCLEPAGSVNVRVYCDGVSLGTRQI 84 (142)
T ss_pred CCEEEE----EECchhcCCCCceEEEEEEECCEEEEEEeE
Confidence 788999 999999 888999999866665544443
No 108
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.23 E-value=77 Score=22.05 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.6
Q ss_pred CCCCCEEEEEEeCCEEEEEEEee
Q 042976 37 FKKDQIRVFVNDQGKLRISGKRP 59 (163)
Q Consensus 37 ~~~edi~V~v~~~~~L~I~g~~~ 59 (163)
|+++.|.|... .+.|.|+|+.=
T Consensus 41 y~~~~I~l~t~-~G~l~I~G~~L 62 (85)
T TIGR02856 41 FSPEEVKLNST-NGKITIEGKNF 62 (85)
T ss_pred ECCCEEEEEcC-ceEEEEEcccE
Confidence 58889999998 89999998763
No 109
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=20.03 E-value=1.6e+02 Score=22.25 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEEEeCCEEEEEEEeeccC
Q 042976 35 VGFKKDQIRVFVNDQGKLRISGKRPIDE 62 (163)
Q Consensus 35 PG~~~edi~V~v~~~~~L~I~g~~~~~~ 62 (163)
.|....+++|.+. ++.++++|......
T Consensus 38 ~~~~~~~i~V~v~-~G~v~l~G~v~s~~ 64 (147)
T PRK11198 38 QGLGDADVNVQVE-DGKATVSGDAASQE 64 (147)
T ss_pred cCCCcCCceEEEe-CCEEEEEEEeCCHH
Confidence 5778889999999 99999999987654
Done!