RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042976
(163 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 67.6 bits (166), Expect = 1e-15
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENNVE----------SFSKRIEVPKDCKSDRIKA 85
GFKK+ I+V V D G L ISG+R +E E SFS+ +P+D D+IKA
Sbjct: 17 GFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKA 75
Query: 86 KLSNGILRLTMPK 98
L NG+L +T+PK
Sbjct: 76 SLENGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 62.6 bits (153), Expect = 7e-14
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPID---ENNVESFSKRIE 73
W + + + +++ + G KK+ I+V V D L ISGKR + E + F + E
Sbjct: 1 WYQTDDEVVVTVD----LPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFE 55
Query: 74 VPKDCKSDRIKAKLSNGILRLTMPK 98
+P+D ++ KA L NG+L +T+PK
Sbjct: 56 LPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 55.7 bits (135), Expect = 6e-11
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 17 WRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVE---------S 67
+ ++ F++ V GFK ++++V V D ++ + GK +E + S
Sbjct: 2 IKEDKDAFVVKLD----VPGFKPEELKVKVED-NRVLVKGKHEKEEEDDHGLRSERSYRS 56
Query: 68 FSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99
FS++ +P++ D++KA L +G+L +T+PK
Sbjct: 57 FSRKFVLPENADPDKVKASLKDGVLTVTVPKL 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 54.2 bits (131), Expect = 2e-10
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKR---PIDENNV--------ESFSKRIEVPKDCKSDR 82
V G KK+ ++V V D LRISG+R + + F +R +P++ +D
Sbjct: 17 VPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76
Query: 83 IKAKLSNGILRLTMPK 98
+KA L NG+L +T+PK
Sbjct: 77 VKAFLENGVLTVTVPK 92
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing
an alpha crystallin domain (ACD) similar to
Lactobacillus plantarum (Lp) small heat shock proteins
(sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Transcription of the genes encoding Lp HSP
18.5, 18.55 and 19.3 is regulated by a variety of
stresses including heat, cold and ethanol. Early
growing L. plantarum cells contain elevated levels of
these mRNAs which rapidly fall of as the cells enter
stationary phase. Also belonging to this group is
Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis
(syn. Leuconostoc oenos) (Oo) HSP18. Transcription of
the gene encoding BbHSP20 is strongly induced following
heat or osmotic shock, and that of the gene encoding
OoHSP18 following heat, ethanol or acid shock. OoHSP18
is peripherally associated with the cytoplasmic
membrane.
Length = 93
Score = 51.7 bits (125), Expect = 2e-09
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENNVE-------------SFSKRIEVPKDCKSDR 82
GFKK+ I++ D G L IS KR ++ + SFS+ +P + +
Sbjct: 20 GFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77
Query: 83 IKAKLSNGILRLTMPK 98
IKAK NG+L++T+PK
Sbjct: 78 IKAKYENGVLKITLPK 93
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 50.1 bits (120), Expect = 2e-08
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENNVE-----------SFSKRIEVPKDCKSDRIK 84
G K+ I + V L I G+R +E E F + +P+ + IK
Sbjct: 60 GVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIK 118
Query: 85 AKLSNGILRLTMPKKT 100
AK NG+L +T+PK
Sbjct: 119 AKYKNGLLTVTLPKAE 134
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 41.0 bits (97), Expect = 2e-05
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKRPIDENNVES----FSKRIEVPKDCKSDRIKAKLS- 88
V GFK ++++V V+D KL + GK E+ F++R ++P+ D + + LS
Sbjct: 15 VKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS 73
Query: 89 NGILRLTMPK 98
+G+L + PK
Sbjct: 74 DGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins
IbpA and IbpB, and similar proteins. IbpA and IbpB are
16 kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated
activity seen under heat shock conditions is retained
for an extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 33.3 bits (77), Expect = 0.011
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 18 RREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVE----------S 67
+ E+ + ++ + V GF +D + + V + +L ++GK+ +EN +
Sbjct: 7 KTGENNYRITLA----VAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRA 61
Query: 68 FSKRIEVPKDCKSDRIK---AKLSNGILRL 94
F + + D +K A+L NG+L +
Sbjct: 62 FERSFNLA-----DHVKVKGAELENGLLTI 86
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 29.9 bits (68), Expect = 0.48
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
AVVLV + A +VYVA K + C
Sbjct: 37 AVVLVGSDPASQVYVASKRKAC 58
>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 165 and 237 amino acids in length.
CD99L2 and CD99 are involved in trans-endothelial
migration of neutrophils in vitro and in the recruitment
of neutrophils into inflamed peritoneum.
Length = 154
Score = 28.6 bits (64), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 123 GAVAVVLVAAAAAVEVYVAF-KYRQCF 148
G V+ V VA AV Y+A+ K + CF
Sbjct: 115 GIVSAVGVALLGAVSSYIAYQKKKLCF 141
>gnl|CDD|222062 pfam13349, DUF4097, Domain of unknown function (DUF4097).
Length = 166
Score = 28.5 bits (64), Expect = 1.2
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 38 KKDQIRVFVNDQGKLRISGKRP-------IDENNVESFSK-RIEVPKDCKSDRIKAKLSN 89
K +++V VN G L I+ K + NN SK I VPK K + +K K S+
Sbjct: 83 KGKKLKVKVNG-GTLTITQKEKKNIFFGGFNFNNSGDKSKITIYVPKKYKLNTLKIKTSS 141
Query: 90 GILRLTMPK 98
G + ++
Sbjct: 142 GDIDISDLT 150
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 28.5 bits (64), Expect = 1.6
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 81 DRIKAKLSNGILRLTMPKKTHSHVTRNQAAATAGRNTLKLGVG---------AVAVVLVA 131
D +K ++ I P T V A A + VG AVA +L
Sbjct: 44 DSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNR 103
Query: 132 AAAAVEV 138
+ V
Sbjct: 104 GLPIIIV 110
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 28.0 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQ 146
AVVLV A +VYV K +Q
Sbjct: 36 AVVLVGEDPASQVYVRSKGKQ 56
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 27.9 bits (63), Expect = 2.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 91 ILRLTMPKKTHSHVTRNQAAATAGRNTLKLGVGAVAVVL 129
I RL P+ T ++ A TL LG GA A VL
Sbjct: 161 IDRLLAPETTREDFAQSFA-------TLTLGSGAAAAVL 192
>gnl|CDD|202169 pfam02239, Cytochrom_D1, Cytochrome D1 heme domain. Cytochrome cd1
(nitrite reductase) catalyzes the conversion of nitrite
to nitric oxide in the nitrogen cycle. This family
represents the d1 heme binding domain of cytochrome cd1,
in which His/Tyr side chains ligate the d1 heme iron of
the active site in the oxidized state.
Length = 369
Score = 27.8 bits (62), Expect = 2.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 22 HQFMLSFSY-YYMVVGFKKDQIRVFVNDQGKLRI---SGKRP 59
H Y++ D+I V+ +GKL +GK P
Sbjct: 175 HDGGFDPDGRYFLAAANASDKIAVWDTKRGKLVALLDTGKTP 216
>gnl|CDD|216802 pfam01944, DUF95, Integral membrane protein DUF95. Members of this
family have several predicted transmembrane regions. The
function of this family is unknown.
Length = 162
Score = 27.2 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 105 TRNQAAATAGRNTLKLGVGAVAVVLVAAAAAVEVYV 140
+A A R + L + V+L+ AA +E +V
Sbjct: 125 FLEEALKKAFRKAVLL-LLLGVVLLLIIAALIEGFV 159
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 27.3 bits (61), Expect = 3.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 106 RNQAAATAGRNTLKLGVGAVAVVLVAAAAAVEVYVAFKYRQC 147
R +AA A T + +AV+LV A +VYV K + C
Sbjct: 16 RAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKAC 57
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 27.2 bits (60), Expect = 4.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 99 KTHSHVTRNQAAAT-AGRNTLKLGVGAVAVVLVAAAAAVEVYVAFKYRQC 147
K S RN+ T R T + +A +LV A E YV+ K + C
Sbjct: 9 KKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKAC 58
>gnl|CDD|227297 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 27.3 bits (61), Expect = 4.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 33 MVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFSKRI 72
MV G RVFV +G L + R +DE + +RI
Sbjct: 63 MVNGPG----RVFVERKGGLEPTDIRFLDEAALLRIIQRI 98
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 27.0 bits (60), Expect = 4.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 108 QAAATAGRNTLKLGVGA----------VAVVLVAAAAAVEVYVAFKYRQC 147
+A A R LK V A +AV+LV A +VYV K R C
Sbjct: 7 KATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERAC 56
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 26.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 109 AAATAGRNTLKLGVGAVAVVLVAAAAAVEVYVAFKYR 145
A A + G+ A A+ VAAA AV +V + R
Sbjct: 355 AVPRARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRR 391
>gnl|CDD|221947 pfam13160, DUF3995, Protein of unknown function (DUF3995). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 138 and
149 amino acids in length. There are two completely
conserved residues (W and P) that may be functionally
important.
Length = 125
Score = 26.1 bits (58), Expect = 6.7
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 118 LKLGVGAVAVVLVAAAAAVEVYVAFKYRQCFFNIGETWR 156
++ G +A V + VY+ F F G + R
Sbjct: 71 VRAGSWVLAAVFLLRGIGGFVYLGF-----FKRAGGSTR 104
>gnl|CDD|220442 pfam09850, DUF2077, Uncharacterized protein conserved in bacteria
(DUF2077). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 206
Score = 26.4 bits (59), Expect = 6.7
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 81 DRIKAKLSNGILRLTMPKKTHSHVTRNQAAATAGRNTLKLGVGAVAVVLVAAAAAVEVYV 140
+ ++++L + R S Q A R ++ V + +AA + +Y+
Sbjct: 143 EALRSRLYALLRRRRPEPAELSP--HWQGVVAARRRLVRRRVPLWVIAALAALLLLLLYL 200
Query: 141 AFKYR 145
Y
Sbjct: 201 GLSYW 205
>gnl|CDD|182203 PRK10034, PRK10034, fructuronate transporter; Provisional.
Length = 447
Score = 26.7 bits (59), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 54 ISGKRPIDENNVESFSKRIEVP 75
+ +P+D NN+ SF I VP
Sbjct: 211 LKADQPVDMNNLPSFGTSILVP 232
>gnl|CDD|202725 pfam03689, Nepo_coat_N, Nepovirus coat protein, N-terminal
domain. The members of this family are derived from
nepoviruses. Together with comoviruses and
picornaviruses, nepoviruses are classified in the
picornavirus superfamily of plus strand single-stranded
RNA viruses. This family aligns several nepovirus coat
protein sequences. In several cases, this is found at
the C-terminus of the RNA2-encoded viral polyprotein.
The coat protein consists of three trapezoid-shaped
beta-barrel domains, and forms a pseudo T = 3
icosahedral capsid structure.
Length = 91
Score = 25.3 bits (56), Expect = 8.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 67 SFSKRIEVPKDCKSDRIKAKLS 88
+F + I VPKD + + A L
Sbjct: 2 AFVESITVPKDATAGTVLATLD 23
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 26.2 bits (58), Expect = 9.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 79 KSDRIKAK-LSNGILRLTMP-----KKTHSHVTRNQAAATAGRNTLKLGV 122
++DR A L NG+LR + + + H + AA +N L+LGV
Sbjct: 37 RNDRALATELVNGVLRYRLQLDFIISRFYHH--DLEKAAPVLKNILRLGV 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,205,723
Number of extensions: 736360
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 40
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)