RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042976
(163 letters)
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 65.7 bits (161), Expect = 9e-15
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENNVE-------SFSKRIEVPKDCKSD-RIKAKL 87
GF K++I+ V+ Q +L I +R I E V+ K I +P + D I K
Sbjct: 44 GFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY 103
Query: 88 SNGILRLTMPKK 99
NG+L + +P
Sbjct: 104 ENGVLTIRIPIA 115
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 62.9 bits (154), Expect = 7e-14
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 9 ADFEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENN---- 64
A + PR + E + F+L + G QI V ++ G L I G+R + +
Sbjct: 1 AQWVPRVDIKEEVNHFVLYAD----LPGIDPSQIEVQMDK-GILSIRGERKSESSTETER 55
Query: 65 ---VE----SFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKTHS 102
+E SF +R +P +D I A NG+L + +PK+ +
Sbjct: 56 FSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPAA 100
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 63.5 bits (155), Expect = 1e-13
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENN-------VE----SFSKRIEVPKDCKSDRIK 84
G KK++++V V D L +SG+R ++ + VE F +R + +D K + +K
Sbjct: 63 GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 85 AKLSNGILRLTMPKK 99
A L NG+L +T+PK
Sbjct: 123 AGLENGVLTVTVPKA 137
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 59.4 bits (144), Expect = 6e-12
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 36 GFKKDQIRVFVNDQGKLRISGKRPIDENNVE------------SFSKRIEVPKDCKSDRI 83
G K+ I + L I KR + I++P K +
Sbjct: 76 GVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENA 134
Query: 84 KAKLSNGILRLTMPKK 99
AK NG+L + +PK
Sbjct: 135 SAKFENGVLSVILPKA 150
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 56.7 bits (137), Expect = 2e-11
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 18 RREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRP--IDENNVES--FSKRIE 73
+ F + V F ++I V V + + + DE+ + F +R
Sbjct: 7 PTDPGYFSVLLD----VKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYR 61
Query: 74 VPKDCKSDRIKAKLS-NGILRLTMPKKTHSHVTRNQAAA 111
+P + + LS G+L + + + AA
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 55.5 bits (134), Expect = 4e-11
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKRP--IDENNVES--FSKRIEVPKDCKSDRIKAKLS- 88
V F ++++V V + + GK DE+ S F ++ +P D I + +S
Sbjct: 14 VKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSS 72
Query: 89 NGILRLTMPKK 99
+G+L + P+K
Sbjct: 73 DGVLTVNGPRK 83
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 54.7 bits (132), Expect = 5e-11
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKRP--IDENNVES--FSKRIEVPKDCKSDRIKAKLS- 88
V F D++ V D G + I+GK DE+ S F+++ +P ++ + LS
Sbjct: 15 VNHFAPDELTVKTKD-GVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSP 73
Query: 89 NGILRLTMPKK 99
G L + P
Sbjct: 74 EGTLTVEAPMP 84
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 55.0 bits (132), Expect = 4e-10
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 12 EPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRP--IDENN--VES 67
R E+ +F ++ V F ++++V V + + GK DE+
Sbjct: 63 TGLSEMRLEKDRFSVNLD----VKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISRE 117
Query: 68 FSKRIEVPKDCKSDRIKAKLS-NGILRLTMPKKTHSHVTR 106
F ++ +P D I + LS +G+L + P+K S R
Sbjct: 118 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 49.9 bits (119), Expect = 7e-09
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKRP--IDENNVES--FSKRIEVPKDCKSDRIKAKLS- 88
V F + + V V + + I GK D++ S F +R +P + + LS
Sbjct: 20 VKHFSPEDLTVKVQE-DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSA 78
Query: 89 NGILRLTMPKK 99
+G+L + PK
Sbjct: 79 DGMLTFSGPKI 89
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 51.0 bits (121), Expect = 2e-08
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 11 FEPRCRWRREEHQFMLSFSYYYMV---VGFKKDQIRVFVNDQGKLRISGKRPIDENNVE- 66
S + + F ++V+ K+ + G +E
Sbjct: 216 AVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKEEKTENA 274
Query: 67 ------SFSKRIEVPKDCKSDRIKAKLSNGILRLTMPK 98
F K P+ + + +A++ +G++ + P
Sbjct: 275 SHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 44.8 bits (105), Expect = 3e-06
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 34 VVGFKKDQIRVFVNDQGKLRISGKRPIDENN---VESFSKRIEVPKDCKSDRIKAKLS-N 89
V FK ++I + + KL + ++ + + ES + I +P + I+A ++ +
Sbjct: 120 VKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD 178
Query: 90 GILRLTMPKKTHSHVTRNQ 108
+L + P ++
Sbjct: 179 DVLVIEAPVNEPNYKAIKL 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.32
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 89 NGILRLTMPKKTHSHVTRNQAAATAG--RNTLKLGVGAVAVVLVAAA-AAVEVYVAF--- 142
G+++L H VT T G R+ LK G ++ A A A + + +F
Sbjct: 241 IGVIQLA-----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 143 --KYRQCFFNIGETWRSSR 159
K F IG R
Sbjct: 296 VRKAITVLFFIG--VRCYE 312
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 29.0 bits (66), Expect = 0.65
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
++V A + YVA K + C
Sbjct: 38 VAIIVGNDPASKTYVASKEKAC 59
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 29.0 bits (66), Expect = 0.65
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
AV+LV A +VYVA K + C
Sbjct: 39 AVILVGTDPASQVYVAHKRKDC 60
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 28.6 bits (65), Expect = 0.73
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
AVVLV + A ++YVA K + C
Sbjct: 37 AVVLVGSNPASQIYVASKRKAC 58
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 28.6 bits (65), Expect = 0.89
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
AV+LV A + YV K + C
Sbjct: 37 AVILVGDNPASQTYVKSKAKAC 58
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 28.6 bits (65), Expect = 0.94
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
+LV + YV K+ C
Sbjct: 36 GTILVGDDPGSQAYVRGKHADC 57
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 28.3 bits (64), Expect = 0.98
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
A ++V + YV K++
Sbjct: 41 ASIIVGQRMDSKKYVQLKHKAA 62
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.5 bits (64), Expect = 1.1
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
L A ++Y + +
Sbjct: 40 VGFLANNDPAAKMYATWTQKTS 61
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 28.2 bits (64), Expect = 1.2
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
++ + A +Y K R+
Sbjct: 31 KLIQIGDNEAASIYARAKIRRG 52
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 22 HQFMLSFSYYYMVVGFKKDQIRVF-VNDQGKL 52
H L+ V+ D++ V+ V+D G+L
Sbjct: 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_L*
Length = 323
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 104 VTRNQAAATAGRNTLKLGVGAV-AVVLVAAAAAV 136
+ A G LK G AV A ++V+ V
Sbjct: 24 SASHPLAVEEGMKVLKNGGSAVDAAIVVSYVLGV 57
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 27.5 bits (62), Expect = 1.9
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 126 AVVLVAAAAAVEVYVAFKYRQC 147
A++ V +Y+ K +
Sbjct: 39 AILQVGNRDDSNLYINVKLKAA 60
>2np5_A Transcriptional regulator; TETR family, structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE LMT NDS; 1.80A
{Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Length = 203
Score = 26.6 bits (59), Expect = 3.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 96 MPKKTHSHVTRNQAAATAGRNTLKLGVGAVAVVLVAAAAAV 136
M ++ +S + + AA + G+ +V VA A V
Sbjct: 1 MRERRYSSTSPERLAAALFDVAAESGLEGASVREVAKRAGV 41
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition
domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB:
2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Length = 343
Score = 26.7 bits (58), Expect = 4.3
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 11 FEPRCRWRREEHQFMLSF---SYYYMVVGFKKDQIRVFVNDQ 49
E W E F + +V+ + D ++ VN +
Sbjct: 93 REGSSNWGEEVRPQEFPFEREKPFVLVIVIQSDTYQITVNGK 134
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix
motif, gene regulation; 2.21A {Streptomyces coelicolor}
Length = 193
Score = 26.3 bits (58), Expect = 4.6
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 96 MPKKTHSHVTRNQAAATAGRNTLKLGVGAVAVVLVAAAAAV 136
M R + A + G+ V+ +A A V
Sbjct: 1 MATGHTDPQRRERILAATLDLIAEEGIARVSHRRIAQRAGV 41
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 1.70A {Rhodococcus SP}
Length = 194
Score = 26.2 bits (58), Expect = 4.7
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 96 MPKKTHSHVTRNQAAATAGRNTLKLGVGAVAVVLVAAAAAV 136
+PK R A A R G+ A + +A A
Sbjct: 2 VPKLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGY 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 8.4
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 12 EPRC--RWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVESFS 69
EP +W REE + L + D + + R K+ ++E N + S
Sbjct: 83 EPESIRKW-REEQRKRLQ----------ELDAAS--KVMEQEWREKAKKDLEEWN-QRQS 128
Query: 70 KRIEVPKDCKSDRIKAK 86
+++E K+ ++RI K
Sbjct: 129 EQVE--KNKINNRIADK 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,519,325
Number of extensions: 143290
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 36
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)