RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 042976
         (163 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 8   PADFEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDENNVE- 66
            A    R  W+      +        + G KK++++V V D   L +SG+R  ++ +   
Sbjct: 38  AAFANARMDWKETPEAHVFKAD----LPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND 93

Query: 67  ----------SFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKK 99
                      F +R  + +D K + +KA L NG+L +T+PK 
Sbjct: 94  KWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 136


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 46.6 bits (110), Expect = 5e-08
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 3   TKLQLPADFEPRCRWRREEHQFMLSFSYYYMVVGFKKDQIRVFVNDQGKLRISGKRPIDE 62
           T +Q+             +    +       + G  K+ I +          + + P+  
Sbjct: 1   TGIQISGKGFMPISIIEGDQHIKVIAW----LPGVNKEDIILNAVGDTLEIRAKRSPLMI 56

Query: 63  NNVE-----------SFSKRIEVPKDCKSDRIKAKLSNGILRLTMPKKTHSHVTR 106
              E              + I++P   K +   AK  NG+L + +PK   S    
Sbjct: 57  TESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKG 111


>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster)
           [TaxId: 7943]}
          Length = 134

 Score = 26.8 bits (59), Expect = 0.96
 Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 15  CRWRREEHQFMLSF---SYYYMVVGFKKDQIRVFVNDQ 49
             W++EE      F    ++   + F      + +++ 
Sbjct: 66  VGWQQEERSKKFPFTKGDHFQTTITFDTHTFYIQLSNG 103


>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 134

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 17  WRREEHQFMLSF---SYYYMVVGFKKDQIRVFVNDQ 49
           W  E+ + +  F   S   + + F +  + V + D 
Sbjct: 68  WGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDG 103


>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP
           {Bacillus subtilis [TaxId: 1423]}
          Length = 162

 Score = 24.8 bits (53), Expect = 4.4
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 109 AAATAGRNTLKLGVGAVAVVLVAAAA 134
                   +L+   GA+  +L     
Sbjct: 130 LTIVDREVSLEETPGALKDILQNRIQ 155


>d1a6ca1 b.121.4.2 (A:1-176) Nepovirus capsid protein {TRSV
          (Tobacco ringspot virus) [TaxId: 12282]}
          Length = 176

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 68 FSKRIEVPKDCKSDRIKAKLS 88
           +   +VPKD K  +      
Sbjct: 12 GTLSFKVPKDAKKGKHLGTFD 32


>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
           38577]}
          Length = 134

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 3/37 (8%), Positives = 11/37 (29%), Gaps = 3/37 (8%)

Query: 16  RWRREE---HQFMLSFSYYYMVVGFKKDQIRVFVNDQ 49
            W  E+          +   +   ++  +I +  +  
Sbjct: 68  AWGSEQREEVFPFQQGAEVMVCFEYQTQKIIIKFSSG 104


>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 137

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 17  WRREEHQFMLSF---SYYYMVVGFKKDQIRVFVNDQ 49
           W REE Q +  F     + + V  + D  +V VND 
Sbjct: 68  WGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDA 103


>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 132

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 16  RWRREEHQFMLSF---SYYYMVVGFKKDQIRVFVNDQ 49
            W  E+ +    F       + + F   +++V V + 
Sbjct: 66  TWGEEDRKADFPFQQGDKVEICISFDAAEVKVKVPEV 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,069
Number of extensions: 25799
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 13
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)