BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042979
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ +DAQ EL+ D ++V Q P GW EGE G+ GW P YV+
Sbjct: 10 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ +DAQ EL+ D ++V Q P GW EGE G+ GW P YV+
Sbjct: 9 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
++ + A + E+S DD + ++ GW G CKG+ G FP YVE ++ P+S
Sbjct: 23 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
++ +DAQ ELS + +D + + + P+GW G +G+ G FP YV +
Sbjct: 11 LYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVER-----QEKA 54
++PF+A+ + E+S + D + V + V GW G +G GWFP YVE+ EKA
Sbjct: 11 LYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEKA 70
Query: 55 PASKIA 60
+ K A
Sbjct: 71 VSPKKA 76
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA 54
F ELS S D + V +V GW EG G+ GWFP YV R+ KA
Sbjct: 17 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV-REVKA 65
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ FD Q +GEL D++ V + W +G C GQ G FP YV
Sbjct: 8 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ FD Q +GEL D++ V + W +G C GQ G FP YV
Sbjct: 8 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
++ + A + E+S DD + ++ GW G CKG+ G FP YVE ++
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ FD Q +GEL D++ V + W +G C GQ G FP YV
Sbjct: 6 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
++ + A + E+S DD + ++ GW G CKG+ G FP YVE ++
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 66
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
FD Q +GEL D++ V + W +G C GQ G FP YV
Sbjct: 167 FDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ FD Q +GEL D++ V + W +G C GQ G FP YV
Sbjct: 8 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F ELS S D + V +V GW EG G+ GWFP YV
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ F+ + +GEL D + + W EG GQ+G+FPL+YV+
Sbjct: 19 LYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F ELS S D + V +V GW EG G+ GWFP YV
Sbjct: 13 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ F A+ + EL+L D V++ + GW G G+ G FP AYVE
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F ELS S D + V +V GW EG G+ GWFP YV
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++P+ A+ + L+ + +D + V + W GE +GQ GWFP +YV+
Sbjct: 18 LYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVK 64
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F ELS+ D + V +V GW EG G+ GWFP YV
Sbjct: 19 FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVR 63
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ F+ + GEL D + + W EG GQ+G+FP+ YVE
Sbjct: 17 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F AQ+ EL+L D V + + W EGE G+ G FP YVE
Sbjct: 10 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F AQ+ EL+L D V + + W EGE G+ G FP YVE
Sbjct: 16 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAE 61
++ F+ + GEL D + + W EG G +G+FP+ YVE P S +
Sbjct: 13 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGPSS 72
Query: 62 G 62
G
Sbjct: 73 G 73
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ FD Q +G+L L D V + + W +G C G+ G FP YV+
Sbjct: 8 LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP-ASKIAEGN 63
+ A+ ELSL V+V + GW G GQ GWFP YV + +P + G
Sbjct: 26 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSGP 85
Query: 64 SS 65
SS
Sbjct: 86 SS 87
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGE-LSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVE 49
++PF + +G+ L + + + + QV GW EGE + G GWFP +YV+
Sbjct: 8 TLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
V++ +DA + ELSL D+ + V V + W GE Q G P+ Y+E P+S
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSS 80
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
F AQ EL L D V + + W EGE G+ G FP Y+E
Sbjct: 16 FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
V+ + Q N ELSL + V V + +GW + GW P Y+E Q P+S
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS 69
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 HPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
+ F A+ ELSL D + ++ + GW GE G+ GWFP YVE
Sbjct: 12 YDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ F+ + GEL D + + W EG G++G+FP+ YVE
Sbjct: 9 LYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 3 HPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQ--EKAPAS 57
+ F A+ ELSL D V + GW +GE G+ GWFP YVE + + P+S
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGPSS 72
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGECKGQAGWFPLAY 47
I+ ++AQ + E+S+ D + V + +GW+ GEC G G FP +Y
Sbjct: 6 IYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVE 49
VI P++AQ + EL++ D V + GW EGE G+ G FP +V+
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
V + A+ ELSL V+V + GW G GQ GWFP YV +
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEE 59
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVE 49
VI P++AQ + EL++ D V + GW EGE G+ G FP +V+
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVE 49
VI P++AQ + EL++ D V + GW EGE G+ G FP +V+
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ F A EL + D + + GW EG KG+ G FP +V+
Sbjct: 19 LYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVK 66
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVE 49
VI P++AQ + EL++ D V + GW EGE G+ G FP +V+
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
V + A+ ELSL V V + GW G GQ GWFP YV
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
V + A+ ELSL V V + GW G GQ GWFP YV
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 5 FDAQANGELSLSID--DYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55
FD N +L L+ D + + W EG +G G FPL++V+ + P
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 77
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53
+ AQ + EL++S+ + + + GW EG+ G+ G FP +V +K
Sbjct: 10 YQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKK 58
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-----KGQAGWFPLAYVERQEKAP 55
V + A + +LSL+ +++ + +GW +GE K Q GWFP ++V+ P
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL--GP 69
Query: 56 ASKIAEGNSS 65
+S+ A G SS
Sbjct: 70 SSERASGPSS 79
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 5 FDAQANGELSLSID--DYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
FD N +L L+ D + + W EG +G G FPL++V+
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 HPFDAQANGELSLSIDDYVV-VCQVAPTGWSEGECKGQAGWFPLAYV 48
+ +DA + EL++ + + + V ++ GW EGE G+ G FP +V
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + + V V ++ +G EGEC G+ G FP +V
Sbjct: 25 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of
C-Crkii
Length = 76
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + + V V ++ +G EGEC G+ G FP +V
Sbjct: 28 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 64
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + + V V ++ +G EGEC G+ G FP +V
Sbjct: 38 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVR 74
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 HPFDAQANGELSLSIDDYVV-VCQVAPTGWSEGECKGQAGWFPLAYVE 49
+ +DA + EL++ + + + V ++ GW EGE G+ G FP +V+
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 54
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYV 48
++ F+ Q G+L+ D + V + W EG+ +GQ G FP YV
Sbjct: 23 LYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + + V V ++ +G EGEC G+ G FP +V
Sbjct: 123 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVR 159
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + + V V ++ +G EGEC G+ G FP +V
Sbjct: 256 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 292
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
I ++ + E++LS D V V + + +GW + K + GW P +++E
Sbjct: 17 IADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
I ++ + E++LS D V V + + +GW + K + GW P +++E
Sbjct: 17 IADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
++ F+ + EL D + + ++ T W +G KG+ G P YV Q
Sbjct: 13 LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
++ + AQ + EL+ S + V W +GE GQ G FP YV+
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
++ F+ + EL D + + ++ T W +G KG+ G P YV Q
Sbjct: 9 LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
+ ++A +L D ++V W EGE KG+ G FP +VE
Sbjct: 11 LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQ----VAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
++ F A+ ELS+S + + + + T W E G+ G+ P Y+ + E P+S
Sbjct: 19 VYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ F+ Q +GEL+ D + + W EG+ + G FP YV
Sbjct: 10 LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
I ++ + E++LS D V V + + +GW + K + GW P +++E
Sbjct: 16 IADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 63
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + D V V ++ G EGE G+ G FP +V+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
I ++ + E++LS D V V + + +GW + K + GW P +++E
Sbjct: 17 IADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
++ + AQ E+S DY+V Q GW G + G+ G P Y+E
Sbjct: 12 MYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ F+ Q +GEL+ D + + W EG+ + G FP YV
Sbjct: 8 LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + D V V ++ G EGE G+ G FP +V+
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + D V V ++ G EGE G+ G FP +V+
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
+ F+ Q +GEL+ D + + W EG+ + G FP YV
Sbjct: 8 LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
L+L + D V V ++ G EGE G+ G FP +V+
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
++ + AQ EL LS D + V GW E GQ G+ P +Y+E+
Sbjct: 14 LYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 5 FDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE-RQEKAPASKIAEG 62
F+ + EL +D + ++ Q W GE G GWFP +VE E++ IA G
Sbjct: 16 FERHDDDELGFRKNDIITIISQKDEHCWV-GELNGLRGWFPAKFVEVLDERSKEYSIASG 74
Query: 63 NSS 65
SS
Sbjct: 75 PSS 77
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA 54
++ F+ + EL + D + + + T W +G KG+ G P YV Q ++
Sbjct: 20 LYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
V + Q + EL L + D + V GW EG G+ G FP ++ ++ P+S
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI-KELSGPSS 67
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
++ F Q N +L + D + + + + W +G+ + + G+FP +V+R
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
+ A+ + L+ S D + V + W GE G GWFP +YV+
Sbjct: 19 WTAKKDNHLNFSKHDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 62
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQ------AGWFPLAYVERQEKA 54
VI+P+ Q + EL L D++ + + T SEG G +G P Y+ + ++
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC 80
Query: 55 PASKIAEGNSSPECG 69
++ I G+S P G
Sbjct: 81 -STWIFHGSSGPSSG 94
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 8 QANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
Q + EL L + D + V GW EG G+ G FP +++
Sbjct: 30 QNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 72
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 8 QANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEGNSSPE 67
AN EL+ D + V + W G+ + GWFP ++V R ++ EG S P
Sbjct: 22 MANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV-RLWVNQEDEVEEG-SGPS 79
Query: 68 CG 69
G
Sbjct: 80 SG 81
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
V+ + Q EL L + D + V + GW G + G FP +V+ E
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 5 FDAQANGELSLSID--DYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55
FD N +L L+ D + + W EG +G G FPL++V+ + P
Sbjct: 181 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 233
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 12 ELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVE 49
EL L D + + + P+GWS G+ + GW P AY++
Sbjct: 17 ELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
V+ + Q EL L + D + + + GW G + G FP +V+ E
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
I+ + ELS + V + GW EG G G FP YVE
Sbjct: 23 IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1 VIHPFDAQANGE--LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
VI +D AN E LS S + V W +GE G G FP YV+
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 1 VIHPFDAQANGE--LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
VI +D AN E LS S + V W +GE G G FP YV+ + S+
Sbjct: 21 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQ 80
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYVE 49
F AQ G+L+ + ++V + P G W + KG G P Y+E
Sbjct: 19 FTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
++P+ + G+L+ + + ++V Q W+ G ++G FP YV+ ++ P+S
Sbjct: 14 LYPYSSVEPGDLTFTEGEEILVTQKDGEWWT-GSIGDRSGIFPSNYVKPKDSGPSS 68
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 9 ANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYV 48
++ EL L D V + + P+GWS + + GW P AY+
Sbjct: 16 SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
V+ + Q EL L + D + + + GW G + G FP +V+
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 9 ANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYV 48
++ EL L D V + + P+GWS + + GW P AY+
Sbjct: 17 SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 58
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 9 ANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYV 48
++ EL L D V + + P+GWS + + GW P AY+
Sbjct: 16 SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
+ + G+L + D +++ + W +GE G +G FP + VE
Sbjct: 16 YRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 5 FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
+ AQ + EL + ++ + + + T W + G+ P YVER+
Sbjct: 40 YTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 86
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
++ F+A + EL+ + ++V + W +GE G FP +V
Sbjct: 23 LYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
I+ F+A + EL+ + + V + W +GE G FP +V
Sbjct: 23 IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYVE 49
++ F + +G+L D + + + + + W G G+ G FP YVE
Sbjct: 9 LYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER-QEKAPAS 57
+ P+ +Q+ E+ V V + GW G+ GW P +Y+++ ++ P+S
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPSS 70
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
++ F+A + EL+ + + V + W +GE G FP +V
Sbjct: 11 LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 12 ELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ--EKAPASKIA--EGNSSPE 67
EL D + V W G GWFP ++V + + PA A GNS E
Sbjct: 46 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAE 105
Query: 68 CGA 70
G
Sbjct: 106 DGG 108
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1 VIHPFD--AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
VI +D AQ + EL + ++ + + + T W + G+ P YVER+
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 59
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYV 48
++ F A + LS++ + + V G W E + K GW P AY+
Sbjct: 11 LYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
+++ F A+ ELS+ D+ + V + W GQAG+ P
Sbjct: 12 ILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVP 55
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVA---PTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
++ ++ Q + ELS + + G+ EGE G+ G FP VE P+S
Sbjct: 14 LYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS 72
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYV 48
++ F A + LS++ + + V G W E + K GW P AY+
Sbjct: 6 LYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 53
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
++ + ++ GE+++ D + + W + E + G+ P AYV++
Sbjct: 12 LYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 7 AQANGELSLSIDDYVVVCQVAPT---GWSEGECKGQAGWFPLAYVE 49
A+ + ELS + V V P+ GW EG G+ G P YVE
Sbjct: 21 AEHDSELSFTAG--TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 12 ELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ--EKAPASKIA--EGNSSPE 67
EL D + V W G GWFP ++V + + PA A GNS E
Sbjct: 52 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAE 111
Query: 68 CGA 70
G
Sbjct: 112 DGG 114
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 2 IHPFDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYV 48
++ F A + LS++ + + V G W E + K GW P Y+
Sbjct: 11 LYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSTYI 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,357,964
Number of Sequences: 62578
Number of extensions: 79752
Number of successful extensions: 268
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 125
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)