Query 042979
Match_columns 72
No_of_seqs 100 out of 1128
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.7 1.9E-17 4.1E-22 74.2 5.2 49 1-49 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.6 6.5E-15 1.4E-19 67.3 4.8 50 1-50 4-54 (55)
3 KOG2070 Guanine nucleotide exc 99.5 1.8E-14 3.9E-19 88.4 2.9 51 2-52 23-73 (661)
4 PF00018 SH3_1: SH3 domain; I 99.5 6.9E-14 1.5E-18 62.3 3.9 45 1-45 2-48 (48)
5 smart00326 SH3 Src homology 3 99.4 2.1E-12 4.5E-17 58.7 5.4 50 1-50 7-57 (58)
6 KOG2199 Signal transducing ada 99.4 2E-13 4.4E-18 81.9 1.6 51 1-51 220-270 (462)
7 KOG1029 Endocytic adaptor prot 99.4 2.5E-13 5.3E-18 86.9 2.0 52 1-52 1058-1109(1118)
8 cd00174 SH3 Src homology 3 dom 99.3 5E-12 1.1E-16 56.8 5.1 49 1-49 4-53 (54)
9 KOG4225 Sorbin and SH3 domain- 99.3 6.6E-12 1.4E-16 76.1 6.3 53 1-53 235-287 (489)
10 KOG4226 Adaptor protein NCK/Do 99.3 3.3E-12 7.1E-17 74.0 4.8 53 3-55 114-166 (379)
11 KOG1118 Lysophosphatidic acid 99.3 1.7E-12 3.7E-17 75.9 2.7 53 1-53 311-363 (366)
12 KOG0162 Myosin class I heavy c 99.2 4.8E-12 1E-16 80.9 2.6 50 1-50 1056-1105(1106)
13 KOG4226 Adaptor protein NCK/Do 99.1 4.1E-11 8.9E-16 69.6 3.1 56 1-56 196-254 (379)
14 KOG4348 Adaptor protein CMS/SE 99.1 1.6E-11 3.5E-16 74.9 0.1 53 1-53 105-157 (627)
15 KOG2856 Adaptor protein PACSIN 99.0 2.6E-11 5.7E-16 72.5 -0.5 51 1-51 419-471 (472)
16 KOG4225 Sorbin and SH3 domain- 99.0 4.9E-10 1.1E-14 68.2 3.3 50 1-50 437-488 (489)
17 KOG1264 Phospholipase C [Lipid 98.9 6.7E-10 1.5E-14 72.1 2.9 53 1-53 779-832 (1267)
18 KOG2546 Abl interactor ABI-1, 98.9 1.1E-09 2.4E-14 66.6 3.3 52 1-52 428-479 (483)
19 KOG2996 Rho guanine nucleotide 98.9 1.1E-09 2.3E-14 69.1 2.8 50 2-51 811-862 (865)
20 KOG4348 Adaptor protein CMS/SE 98.9 1.2E-09 2.7E-14 66.9 2.6 51 2-52 267-319 (627)
21 KOG0515 p53-interacting protei 98.8 8.4E-10 1.8E-14 68.9 1.0 52 1-52 688-742 (752)
22 KOG1029 Endocytic adaptor prot 98.8 2.3E-09 4.9E-14 69.3 2.5 53 1-54 818-870 (1118)
23 KOG4792 Crk family adapters [S 98.8 2.1E-09 4.4E-14 61.2 1.6 53 1-53 129-182 (293)
24 KOG3655 Drebrins and related a 98.6 1.2E-08 2.5E-13 62.8 1.4 51 1-51 432-483 (484)
25 KOG3875 Peroxisomal biogenesis 98.6 1.8E-08 4E-13 59.4 1.4 57 1-57 273-336 (362)
26 KOG3601 Adaptor protein GRB2, 98.6 5E-08 1.1E-12 54.8 2.7 50 1-50 168-217 (222)
27 KOG1843 Uncharacterized conser 98.5 3.3E-08 7.3E-13 60.1 1.7 50 1-50 421-472 (473)
28 KOG1702 Nebulin repeat protein 98.4 7.8E-07 1.7E-11 50.1 3.9 50 1-50 212-263 (264)
29 KOG4773 NADPH oxidase [Energy 98.3 6.1E-08 1.3E-12 57.9 -0.9 56 1-56 180-235 (386)
30 KOG3523 Putative guanine nucle 98.3 3.7E-08 8.1E-13 62.3 -2.1 52 2-53 614-667 (695)
31 KOG4278 Protein tyrosine kinas 98.2 1E-06 2.2E-11 57.1 2.9 51 1-52 95-147 (1157)
32 KOG3775 Mitogen-activated prot 98.1 1.8E-06 4E-11 52.4 2.6 54 1-54 267-322 (482)
33 KOG3632 Peripheral benzodiazep 98.0 4.3E-06 9.3E-11 55.9 3.0 52 1-52 1143-1203(1335)
34 KOG2528 Sorting nexin SNX9/SH3 97.9 6.5E-06 1.4E-10 50.9 2.4 52 1-52 7-60 (490)
35 KOG2222 Uncharacterized conser 97.9 3.4E-06 7.4E-11 53.0 0.6 51 1-51 553-603 (848)
36 KOG3557 Epidermal growth facto 97.8 2E-06 4.4E-11 55.0 -1.1 51 2-53 506-557 (721)
37 KOG4792 Crk family adapters [S 97.7 0.0001 2.2E-09 42.5 4.0 43 10-52 243-285 (293)
38 KOG1451 Oligophrenin-1 and rel 97.6 5.9E-05 1.3E-09 48.5 3.0 49 2-50 762-811 (812)
39 KOG0609 Calcium/calmodulin-dep 97.6 2E-05 4.3E-10 49.7 0.6 51 1-51 219-281 (542)
40 KOG0197 Tyrosine kinases [Sign 97.5 2.2E-05 4.8E-10 49.0 -0.1 51 1-51 16-69 (468)
41 KOG3771 Amphiphysin [Intracell 97.4 8E-05 1.7E-09 46.3 1.4 49 1-49 405-454 (460)
42 KOG4429 Uncharacterized conser 97.2 0.00012 2.6E-09 43.6 1.0 50 1-50 368-417 (421)
43 KOG4575 TGc (transglutaminase/ 97.2 0.00063 1.4E-08 44.3 4.1 52 1-52 13-66 (874)
44 KOG3601 Adaptor protein GRB2, 97.1 5.9E-05 1.3E-09 42.8 -1.1 50 1-50 5-55 (222)
45 KOG0199 ACK and related non-re 96.8 0.0051 1.1E-07 41.1 5.2 46 4-49 382-430 (1039)
46 KOG3632 Peripheral benzodiazep 96.4 0.0092 2E-07 40.9 4.8 53 2-54 453-513 (1335)
47 PF14603 hSH3: Helically-exten 96.4 0.0078 1.7E-07 29.8 3.4 43 9-51 29-72 (89)
48 PF08239 SH3_3: Bacterial SH3 96.4 0.017 3.6E-07 25.7 4.3 37 13-49 17-55 (55)
49 KOG3725 SH3 domain protein SH3 96.3 0.00057 1.2E-08 40.2 -1.1 51 1-51 322-374 (375)
50 smart00287 SH3b Bacterial SH3 95.6 0.059 1.3E-06 24.5 4.2 36 13-48 25-61 (63)
51 KOG3565 Cdc42-interacting prot 95.0 0.0044 9.6E-08 40.5 -0.8 51 1-51 583-636 (640)
52 PRK10884 SH3 domain-containing 94.7 0.058 1.3E-06 30.8 3.3 39 13-51 48-88 (206)
53 KOG3705 Glycoprotein 6-alpha-L 94.0 0.047 1E-06 34.4 2.1 49 2-50 515-565 (580)
54 PF06347 SH3_4: Bacterial SH3 94.0 0.25 5.4E-06 22.0 4.2 35 13-48 19-53 (55)
55 KOG3812 L-type voltage-depende 93.5 0.031 6.7E-07 34.4 0.7 35 11-45 80-117 (475)
56 KOG0040 Ca2+-binding actin-bun 91.7 0.0019 4.1E-08 45.8 -6.5 53 1-53 973-1025(2399)
57 KOG2996 Rho guanine nucleotide 90.6 0.21 4.5E-06 33.1 1.9 45 11-55 625-672 (865)
58 PRK13914 invasion associated s 89.3 1.1 2.3E-05 29.0 4.2 38 13-50 103-141 (481)
59 smart00743 Agenet Tudor-like d 87.5 1.4 3.1E-05 19.8 3.1 22 14-35 2-23 (61)
60 COG3103 SH3 domain protein [Si 86.6 1.9 4.1E-05 24.8 3.8 39 13-51 48-88 (205)
61 KOG4384 Uncharacterized SAM do 74.7 2.2 4.9E-05 26.5 1.5 44 9-52 151-194 (361)
62 KOG3580 Tight junction protein 67.2 11 0.00025 25.6 3.5 44 3-46 511-563 (1027)
63 PF12913 SH3_6: SH3 domain of 65.3 12 0.00026 16.9 3.9 32 13-44 21-53 (54)
64 PF11302 DUF3104: Protein of u 65.2 15 0.00032 17.8 3.0 23 13-35 4-32 (75)
65 PF05641 Agenet: Agenet domain 50.3 26 0.00055 16.2 2.4 21 15-35 1-24 (68)
66 PRK13545 tagH teichoic acids e 28.7 1E+02 0.0022 20.8 3.2 34 18-51 375-414 (549)
67 smart00333 TUDOR Tudor domain. 26.4 69 0.0015 13.7 3.3 21 15-36 3-23 (57)
68 PF03894 XFP: D-xylulose 5-pho 25.6 2.1 4.5E-05 24.1 -4.0 34 12-45 54-89 (179)
69 PF03080 DUF239: Domain of unk 24.7 1.3E+02 0.0029 17.6 3.0 25 27-51 115-139 (229)
70 PF07828 PA-IL: PA-IL-like pro 24.5 76 0.0016 16.9 1.8 15 11-25 16-30 (121)
71 PRK02749 photosystem I reactio 22.2 89 0.0019 14.9 1.6 19 14-33 2-20 (71)
72 COG3807 Uncharacterized protei 22.1 1.4E+02 0.0031 16.7 2.6 22 23-44 136-157 (171)
73 PF01191 RNA_pol_Rpb5_C: RNA p 21.0 1E+02 0.0022 14.9 1.7 17 13-29 47-63 (74)
74 CHL00125 psaE photosystem I su 20.3 1E+02 0.0022 14.4 1.6 18 15-33 2-19 (64)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.72 E-value=1.9e-17 Score=74.21 Aligned_cols=49 Identities=35% Similarity=0.635 Sum_probs=44.3
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 49 (72)
|+|+|.++.+++|+|++|+.|.++.....+||.++.+|+.|+||.+|++
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999998888999999999999999999985
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.58 E-value=6.5e-15 Score=67.32 Aligned_cols=50 Identities=38% Similarity=0.701 Sum_probs=44.1
Q ss_pred CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
|+++|.+..+++|+|.+||.+.|+ .....+||.++.+|+.|+||.+++++
T Consensus 4 a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 4 AIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp ESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred EeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 468999999999999999999999 77778999999999999999999975
No 3
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.8e-14 Score=88.35 Aligned_cols=51 Identities=41% Similarity=0.752 Sum_probs=48.1
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
-|.|.+.+.+||+|.+||+|.|.+..+.|||.|+.+|+.||||++||.++.
T Consensus 23 kf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 23 KFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred EeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 478999999999999999999999989999999999999999999999874
No 4
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.48 E-value=6.9e-14 Score=62.29 Aligned_cols=45 Identities=31% Similarity=0.598 Sum_probs=40.1
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPL 45 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~ 45 (72)
|+|+|.+...++|+|.+|+.+.|++..+.+||.++. +++.|+||+
T Consensus 2 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 2 ALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp ESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 689999999999999999999999888889999995 479999995
No 5
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.38 E-value=2.1e-12 Score=58.69 Aligned_cols=50 Identities=34% Similarity=0.620 Sum_probs=45.0
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC-CeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~ 50 (72)
|+++|.+....+|.+.+|+.+.++.....+||.++.. ++.|+||.+++..
T Consensus 7 a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 7 ALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred EeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 4789999999999999999999998878899999965 9999999999875
No 6
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=99.36 E-value=2e-13 Score=81.87 Aligned_cols=51 Identities=27% Similarity=0.515 Sum_probs=48.2
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 51 (72)
|+|||++...+||+|++||+|.|++.....||+|...+..|+||.+||...
T Consensus 220 ALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 220 ALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD 270 (462)
T ss_pred hhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence 689999999999999999999999999999999999999999999999864
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.5e-13 Score=86.85 Aligned_cols=52 Identities=33% Similarity=0.604 Sum_probs=48.9
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
++|||.++++++|+|.+|++|.|+.++++.||.|.++|..|+||++||....
T Consensus 1058 amYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1058 AMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred EeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence 5899999999999999999999999999999999999999999999997653
No 8
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.34 E-value=5e-12 Score=56.77 Aligned_cols=49 Identities=37% Similarity=0.646 Sum_probs=43.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC-eEEEecCCCeE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-QAGWFPLAYVE 49 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~ 49 (72)
++++|.+....+|++.+|+.+.+++....+||.++..+ +.|+||.++++
T Consensus 4 a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 4 ALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 47899999999999999999999988778999999644 99999998875
No 9
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.6e-12 Score=76.14 Aligned_cols=53 Identities=34% Similarity=0.597 Sum_probs=50.4
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 53 (72)
|+|+|+++...||.|.+||+|.|+++.+..|+.|...|+.|+||++|++.+..
T Consensus 235 alf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 235 ALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred heeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 57999999999999999999999999999999999999999999999998865
No 10
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.32 E-value=3.3e-12 Score=74.03 Aligned_cols=53 Identities=34% Similarity=0.662 Sum_probs=48.9
Q ss_pred cccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979 3 HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55 (72)
Q Consensus 3 ~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~ 55 (72)
|.|.++..+||++.+|..+.|+++...|||+|..+|+.||||++|+.+....+
T Consensus 114 f~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~ 166 (379)
T KOG4226|consen 114 FNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSA 166 (379)
T ss_pred EeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhcccc
Confidence 67899999999999999999999999999999999999999999999876543
No 11
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-12 Score=75.94 Aligned_cols=53 Identities=30% Similarity=0.612 Sum_probs=50.0
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 53 (72)
++|||++.+..||.|+.||+|.++...+++||.|...|..|+||.+|+..+..
T Consensus 311 alYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 311 ALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred eeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 58999999999999999999999999999999999999999999999998754
No 12
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.23 E-value=4.8e-12 Score=80.90 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=47.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
|+|+|.++..+||+|++|++|.|+.++.+|||.|+.+|+.||||.+||.+
T Consensus 1056 A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1056 ALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred eeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 57999999999999999999999999999999999999999999999864
No 13
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.14 E-value=4.1e-11 Score=69.58 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=49.3
Q ss_pred CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEE-eCCeEEEecCCCeEEcccCCC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGE-CKGQAGWFPLAYVERQEKAPA 56 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~ 56 (72)
|+|.|.+.+..||+|.+|+.+.|+++ .++.||.++ .+|+.|++|.+|+..+...+.
T Consensus 196 aLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ 254 (379)
T KOG4226|consen 196 ALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPS 254 (379)
T ss_pred EEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCcc
Confidence 57999999999999999999998853 566899999 799999999999999876553
No 14
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=99.09 E-value=1.6e-11 Score=74.86 Aligned_cols=53 Identities=26% Similarity=0.581 Sum_probs=49.1
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 53 (72)
+.|.|.+++.++|.|+.||+|.++.....|||.|.++|..|.||.+|+.++..
T Consensus 105 v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 105 VTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred EEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence 35789999999999999999999988899999999999999999999998864
No 15
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.04 E-value=2.6e-11 Score=72.54 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=45.0
Q ss_pred CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeC-CeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECK-GQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~-g~~G~~P~~~v~~~ 51 (72)
|+|||.++..++|+|+.|+.+..+ +.+.-||+.|+++ |+.|++|.+||+.+
T Consensus 419 aLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 419 ALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 589999999999999999999766 5667799999965 99999999999754
No 16
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.98 E-value=4.9e-10 Score=68.23 Aligned_cols=50 Identities=32% Similarity=0.544 Sum_probs=46.8
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~ 50 (72)
|+|.|.+++.++|.|..||+|.|+++.++||+.|+ +.|.-|.||.+||..
T Consensus 437 Aly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 437 ALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred eccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 68999999999999999999999999999999996 789999999999964
No 17
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.93 E-value=6.7e-10 Score=72.09 Aligned_cols=53 Identities=26% Similarity=0.542 Sum_probs=48.1
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC-eEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-QAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~ 53 (72)
|+|+|.++..+||+|.++.+|..+++...+||+|.+.| ..+|||.+||+++..
T Consensus 779 AL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 779 ALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 68999999999999999999999999888999999875 559999999998865
No 18
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.1e-09 Score=66.57 Aligned_cols=52 Identities=33% Similarity=0.530 Sum_probs=48.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
++|||.+...++|+|..+-+|.++++++++||.|...+..|+||.+|++.+.
T Consensus 428 ~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 428 AIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred hhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 5799999999999999999999999999999999999999999999998653
No 19
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-09 Score=69.12 Aligned_cols=50 Identities=40% Similarity=0.698 Sum_probs=43.0
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEc
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQ 51 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~ 51 (72)
-|||-+..-.+|+++.||++.|..+. +.|||+|..+|+.||||.+||++-
T Consensus 811 rYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 811 RYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred ccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 47788888889999999999988543 358999999999999999999864
No 20
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.88 E-value=1.2e-09 Score=66.87 Aligned_cols=51 Identities=31% Similarity=0.586 Sum_probs=44.6
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
+|-|++++.++|.++.||++.++.++ +-|||.|.++|+.|+||-+|+..+.
T Consensus 267 ~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 267 KFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred eeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 57799999999999999999877543 3389999999999999999998765
No 21
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=8.4e-10 Score=68.95 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=45.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCC---CcEEEEeCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPT---GWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~---~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
|++||+++..+||+|..||.+.|+++++. .||.++.+|+.|++|.+|+-...
T Consensus 688 AlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 688 ALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred EeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 57899999999999999999999976433 68888999999999999997664
No 22
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.3e-09 Score=69.28 Aligned_cols=53 Identities=32% Similarity=0.626 Sum_probs=46.3
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA 54 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 54 (72)
|+|.|.+.....|+|.+||+|.|+++- .-||.|...|..||||++||.++...
T Consensus 818 A~y~wrakke~dLsFskgd~I~Vlekq-emwW~G~v~g~~GwFPksYVk~~~~~ 870 (1118)
T KOG1029|consen 818 ALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWFGEVAGEIGWFPKSYVKEVGAI 870 (1118)
T ss_pred hhccccccccccccccCCCeeeeehhc-cceecccccCccCcCcHHhhhhcccc
Confidence 468899999999999999999999874 45999999999999999999966443
No 23
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.80 E-value=2.1e-09 Score=61.16 Aligned_cols=53 Identities=17% Similarity=0.463 Sum_probs=47.9
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~ 53 (72)
++|+|.+....+|.|++|+++.|+.+....||.++ ..|+.|.+|..||+....
T Consensus 129 ~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~ 182 (293)
T KOG4792|consen 129 ALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRP 182 (293)
T ss_pred eeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhh
Confidence 47899999999999999999999999888999999 799999999999986643
No 24
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=98.63 E-value=1.2e-08 Score=62.78 Aligned_cols=51 Identities=27% Similarity=0.543 Sum_probs=46.8
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~ 51 (72)
|+|+|++-...++.|..++.|.++...+.|||.|. -+|+.|+||.+||..+
T Consensus 432 A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 432 ALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred ccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 57999999999999999999999988889999999 6899999999999764
No 25
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.8e-08 Score=59.41 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=44.8
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcC-----CCCcEEEE-e-CCeEEEecCCCeEEcccCCCC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVA-----PTGWSEGE-C-KGQAGWFPLAYVERQEKAPAS 57 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-----~~~w~~~~-~-~g~~G~~P~~~v~~~~~~~~~ 57 (72)
|+|||.+.++.|++|++||++.|..++ ...||..+ + .+..|+||.+||+.+.+.+++
T Consensus 273 A~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~qs 336 (362)
T KOG3875|consen 273 ALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQPQS 336 (362)
T ss_pred HHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCCCC
Confidence 579999999999999999999877332 22466666 5 677899999999998774444
No 26
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.57 E-value=5e-08 Score=54.83 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=46.1
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
++|+|.+..+.++.+++|+.+.++...+..||.|..-|+.|+||.+++..
T Consensus 168 a~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p 217 (222)
T KOG3601|consen 168 ALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP 217 (222)
T ss_pred hcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence 46889999999999999999999998889999999999999999999864
No 27
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.3e-08 Score=60.09 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=44.1
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCC--CcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~--~w~~~~~~g~~G~~P~~~v~~ 50 (72)
++|+|.++....+.|++||+|.++.+.+. .||+++.+++.|+||.+|+..
T Consensus 421 a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 421 ALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred eeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 47899999999999999999998866444 699999999999999999863
No 28
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=98.35 E-value=7.8e-07 Score=50.14 Aligned_cols=50 Identities=32% Similarity=0.548 Sum_probs=44.3
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~ 50 (72)
|+|||.++..++++|.-||.|.-+...+.||..|+ +.|..|-+|.+|++-
T Consensus 212 a~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 212 AFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred hhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 57899999999999999999987777788898888 589999999999874
No 29
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=98.33 E-value=6.1e-08 Score=57.92 Aligned_cols=56 Identities=21% Similarity=0.435 Sum_probs=50.7
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~ 56 (72)
++++|.++...||.+..|+++.++.+++.+||.|+.++.+|++|..|+..+...|.
T Consensus 180 a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 180 ASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred hhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 35789999999999999999998888899999999999999999999998876666
No 30
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=98.32 E-value=3.7e-08 Score=62.29 Aligned_cols=52 Identities=44% Similarity=0.875 Sum_probs=46.8
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~ 53 (72)
...|.+..+++|.+..+|++.|+++..+||+.|. .+|..||||..|++++..
T Consensus 614 ~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 614 VHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred eeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 3568999999999999999999999999999998 589999999999998743
No 31
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=98.23 E-value=1e-06 Score=57.13 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=42.8
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCC-CCcEEEE-eCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGE-CKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~ 52 (72)
|+|||.+.+...|++.+|+.+.|+.-.. ..|..++ .+|+ ||+|.+|+..++
T Consensus 95 ALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN 147 (1157)
T KOG4278|consen 95 ALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN 147 (1157)
T ss_pred eeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc
Confidence 5899999999999999999999995433 4488888 5666 999999998764
No 32
>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]
Probab=98.15 E-value=1.8e-06 Score=52.42 Aligned_cols=54 Identities=31% Similarity=0.454 Sum_probs=47.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcccC
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEKA 54 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~ 54 (72)
+++.|.+..++||.+.+||.+.|..+.+..|+.|. +.|+.|+||..|+.++...
T Consensus 267 ~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 267 AVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred hhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 35678999999999999999999988888899998 6899999999999988654
No 33
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=4.3e-06 Score=55.85 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=43.6
Q ss_pred CccccCCC--------CCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQ--------ANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~--------~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
|++||++. ...||.|+.|++|.|+ .++..|+|.|..+|+.|++|+++|.++.
T Consensus 1143 AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1143 ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 46788752 2247999999999998 6677899999999999999999999864
No 34
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=6.5e-06 Score=50.88 Aligned_cols=52 Identities=29% Similarity=0.601 Sum_probs=46.0
Q ss_pred CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~-~~g~~G~~P~~~v~~~~ 52 (72)
++|+|...+..++++..++.+.+. +....+||.+. ..|..|+||..|++...
T Consensus 7 amyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 7 AMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred hhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 579999999999999999999888 45567899999 69999999999999875
No 35
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=97.89 E-value=3.4e-06 Score=53.01 Aligned_cols=51 Identities=27% Similarity=0.540 Sum_probs=45.0
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 51 (72)
|+.||.....++|.|+++|++.|+.+.+...|-|..+|.+||||..+|+.+
T Consensus 553 al~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvell 603 (848)
T KOG2222|consen 553 ALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELL 603 (848)
T ss_pred HHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHH
Confidence 356888888999999999999999877788889999999999999888755
No 36
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=97.84 E-value=2e-06 Score=54.99 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=44.1
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~ 53 (72)
.|||.+.+..+|++.+++++.|+.. ...||.++ ..|+.|++|++.+..+..
T Consensus 506 ~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~ 557 (721)
T KOG3557|consen 506 LYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP 557 (721)
T ss_pred ehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence 6899999999999999999987765 46799999 689999999998887643
No 37
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=97.66 E-value=0.0001 Score=42.46 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=38.9
Q ss_pred CCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 10 NGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 10 ~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
...|.+++|+++.|.+..-.|-|.|.++|+.|.||..||....
T Consensus 243 kTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d 285 (293)
T KOG4792|consen 243 KTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTD 285 (293)
T ss_pred hhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeec
Confidence 4569999999999999989999999999999999999998664
No 38
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.63 E-value=5.9e-05 Score=48.46 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=40.9
Q ss_pred ccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979 2 IHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
+|...+....++.+..|.++.-+ .....||..|+++|..|++|.+||+.
T Consensus 762 lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~ 811 (812)
T KOG1451|consen 762 LYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP 811 (812)
T ss_pred eeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence 45556677789999999998755 56778999999999999999999974
No 39
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=97.60 E-value=2e-05 Score=49.71 Aligned_cols=51 Identities=16% Similarity=0.375 Sum_probs=40.5
Q ss_pred CccccCCCCC-------CccccCCCCEEEEEEcCCCCcEEEEeC-----CeEEEecCCCeEEc
Q 042979 1 VIHPFDAQAN-------GELSLSIDDYVVVCQVAPTGWSEGECK-----GQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~-------~~l~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~ 51 (72)
|++||++... ..+.|++||++.|+.+++..||.++.. +..|++|+...++.
T Consensus 219 a~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 219 ALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred hhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 4678877654 359999999999999999999999843 45689998777654
No 40
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=97.49 E-value=2.2e-05 Score=49.03 Aligned_cols=51 Identities=22% Similarity=0.495 Sum_probs=43.8
Q ss_pred CccccCCCCCCccccCCCCE-EEEEEcCCCCcEEEE-e-CCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDY-VVVCQVAPTGWSEGE-C-KGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~-i~v~~~~~~~w~~~~-~-~g~~G~~P~~~v~~~ 51 (72)
|+|+|.+..+.+|+|.+|++ ..+++..+..||.++ . .+..|++|.|++...
T Consensus 16 alyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 16 ALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred EeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 46899999999999999999 667777778899988 3 788899999999864
No 41
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=8e-05 Score=46.35 Aligned_cols=49 Identities=24% Similarity=0.225 Sum_probs=39.9
Q ss_pred CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVE 49 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~ 49 (72)
++|+|.+...++|+|+.|+.|.|+. .+...||.|+++|..+-++.+++.
T Consensus 405 a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 405 ALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 4789999999999999999999885 344569999988877766666664
No 42
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=97.25 E-value=0.00012 Score=43.63 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=43.0
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
+.|+|++...++|...+|+...+-+....+||.|++.|.-+-||..++++
T Consensus 368 afYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 368 AFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE 417 (421)
T ss_pred hhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence 46889999999999999999877777788999999998888888877754
No 43
>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00063 Score=44.28 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=41.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQE 52 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~ 52 (72)
|+|.+.++..++|.|..||.+..++..+..||-+.. +...|+||.+||..+.
T Consensus 13 A~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 13 ALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred eeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence 457778888999999999999888876666776663 5567999999997664
No 44
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=97.12 E-value=5.9e-05 Score=42.75 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=41.5
Q ss_pred CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeCCeEEEecCCCeEE
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECKGQAGWFPLAYVER 50 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~ 50 (72)
++++|.....+||.|.+|+.+.++.. +.-.|+.....|..|++|.++...
T Consensus 5 a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 5 AKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 35788899999999999999987754 334688888999999999988843
No 45
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=96.77 E-value=0.0051 Score=41.10 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=38.0
Q ss_pred ccCCCCCCccccCCCCEEEEEEcCC-CCcEEEE--eCCeEEEecCCCeE
Q 042979 4 PFDAQANGELSLSIDDYVVVCQVAP-TGWSEGE--CKGQAGWFPLAYVE 49 (72)
Q Consensus 4 ~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~ 49 (72)
+|+...++.|.+++||.|.|++... ..||+|. ++++.|.||.+-+.
T Consensus 382 ~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 382 TYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 4667788899999999999886544 4699996 68899999998776
No 46
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.43 E-value=0.0092 Score=40.91 Aligned_cols=53 Identities=25% Similarity=0.495 Sum_probs=42.2
Q ss_pred ccccCC------CCCCccccCCCCEEEEE-EcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979 2 IHPFDA------QANGELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPLAYVERQEKA 54 (72)
Q Consensus 2 ~~~~~~------~~~~~l~~~~g~~i~v~-~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~ 54 (72)
.|+|++ ....+|.+..|+.|+|. ..+..+++.|. ..|+.|++|.+||+.+.+.
T Consensus 453 rySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d~ 513 (1335)
T KOG3632|consen 453 RYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTDT 513 (1335)
T ss_pred EEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEeccc
Confidence 456665 23457999999999998 45667899999 6999999999999987553
No 47
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=96.40 E-value=0.0078 Score=29.83 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=28.5
Q ss_pred CCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979 9 ANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 9 ~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~ 51 (72)
+...|.+.+|+.+.|++.....-|.++ ..|+-|+++.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 345799999999999988778878888 6999999999887544
No 48
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.39 E-value=0.017 Score=25.70 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=28.3
Q ss_pred cccCCCCEEEEEEcCCCC-cEEEE-eCCeEEEecCCCeE
Q 042979 13 LSLSIDDYVVVCQVAPTG-WSEGE-CKGQAGWFPLAYVE 49 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~~-w~~~~-~~g~~G~~P~~~v~ 49 (72)
-.+..|+.+.++.....+ |++.+ .++..||+...++.
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 456788999888664444 99994 79999999988764
No 49
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=96.29 E-value=0.00057 Score=40.22 Aligned_cols=51 Identities=31% Similarity=0.524 Sum_probs=42.4
Q ss_pred CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEEeCCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~ 51 (72)
++|||++..+.++++..+++|.|... .+..|.-|...++.|-+|-.|++.+
T Consensus 322 VlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 322 VLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred eeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 47999999999999999999987753 3456988888899999998887643
No 50
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=95.56 E-value=0.059 Score=24.46 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=27.5
Q ss_pred cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCe
Q 042979 13 LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYV 48 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v 48 (72)
-.+..|+.+.++.....+|++.+. +|..||++..++
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 447789999888765448999885 599999976544
No 51
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=94.97 E-value=0.0044 Score=40.55 Aligned_cols=51 Identities=24% Similarity=0.611 Sum_probs=42.5
Q ss_pred CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGE--CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~--~~g~~G~~P~~~v~~~ 51 (72)
++|.|.+.+..++.+..|+++.+++ ....+|=+++ .++..|++|.+|+...
T Consensus 583 a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 583 ALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred cccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 4688999999999999999988774 4556787887 6888999999998765
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.69 E-value=0.058 Score=30.82 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=31.0
Q ss_pred cccCCCCEEEEEEcCC-CCcEEEE-eCCeEEEecCCCeEEc
Q 042979 13 LSLSIDDYVVVCQVAP-TGWSEGE-CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~ 51 (72)
-.+..|+.+.++.... .+|...+ .+|+.||++..++...
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 4577899998886554 5799998 6899999999887654
No 53
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.047 Score=34.38 Aligned_cols=49 Identities=29% Similarity=0.354 Sum_probs=38.0
Q ss_pred ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979 2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER 50 (72)
Q Consensus 2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~ 50 (72)
+++..++...++.++.||.+.|-...-.|.-+|+ ..++.|+||+--+++
T Consensus 515 i~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 515 IEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred EEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 4567788888999999999988866555666666 467889999876665
No 54
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=94.00 E-value=0.25 Score=21.98 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=26.4
Q ss_pred cccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCe
Q 042979 13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v 48 (72)
..+..|..+.+... ..+|.+.+.+|..||++...+
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 55667777777643 568999999999999987554
No 55
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.53 E-value=0.031 Score=34.39 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=28.6
Q ss_pred CccccCCCCEEEEEEcCCCCcEEEE--e-CCeEEEecC
Q 042979 11 GELSLSIDDYVVVCQVAPTGWSEGE--C-KGQAGWFPL 45 (72)
Q Consensus 11 ~~l~~~~g~~i~v~~~~~~~w~~~~--~-~g~~G~~P~ 45 (72)
..++|...|.+.|-++-+..||-|+ . .+..||+|.
T Consensus 80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred ceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 3588899999988888889999999 2 445699986
No 56
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.68 E-value=0.0019 Score=45.77 Aligned_cols=53 Identities=19% Similarity=0.439 Sum_probs=45.6
Q ss_pred CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979 1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53 (72)
Q Consensus 1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 53 (72)
++|+|....+-+.+.++||++.++......||.+++..+.|++|..|+..+..
T Consensus 973 alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~ 1025 (2399)
T KOG0040|consen 973 ALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDP 1025 (2399)
T ss_pred HHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhcc
Confidence 46888888888999999999887777778899999999999999999987644
No 57
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=90.61 E-value=0.21 Score=33.06 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=32.9
Q ss_pred CccccCCCCEEEEEE-cCCCCcEEEEe--CCeEEEecCCCeEEcccCC
Q 042979 11 GELSLSIDDYVVVCQ-VAPTGWSEGEC--KGQAGWFPLAYVERQEKAP 55 (72)
Q Consensus 11 ~~l~~~~g~~i~v~~-~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~ 55 (72)
.-+.++.|+++.+.. .....||.|+. ....|+||++-+..-...|
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 358889999987764 44557999993 5677999998877554434
No 58
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=89.28 E-value=1.1 Score=28.98 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=30.3
Q ss_pred cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEE
Q 042979 13 LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVER 50 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~ 50 (72)
-.+..|+.+.++.....+|++.+. +|+.||+-..|+..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 457789998887544668999997 69999998888875
No 59
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=87.46 E-value=1.4 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.2
Q ss_pred ccCCCCEEEEEEcCCCCcEEEE
Q 042979 14 SLSIDDYVVVCQVAPTGWSEGE 35 (72)
Q Consensus 14 ~~~~g~~i~v~~~~~~~w~~~~ 35 (72)
.|.+|+.+.+.......||.|+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~ 23 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAV 23 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEE
Confidence 4788999988876677899998
No 60
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=86.57 E-value=1.9 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=29.8
Q ss_pred cccCCCCEEEEEEcCCC-CcEEEE-eCCeEEEecCCCeEEc
Q 042979 13 LSLSIDDYVVVCQVAPT-GWSEGE-CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~-~w~~~~-~~g~~G~~P~~~v~~~ 51 (72)
=.++.|+.+.|+..... +|...+ .+|..|||+...+...
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e 88 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSE 88 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccc
Confidence 45788999998865444 798988 5899999988666543
No 61
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=74.67 E-value=2.2 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979 9 ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52 (72)
Q Consensus 9 ~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 52 (72)
..+++.+.+|+.+.++.....+-|.+-..++.|.|+..++..+.
T Consensus 151 ~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 151 DTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVIS 194 (361)
T ss_pred cccchhhcccchhhccccCccccccccccCcccccccceecccc
Confidence 45678899999999998888888999999999999988888763
No 62
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=67.24 E-value=11 Score=25.63 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=29.5
Q ss_pred cccCCCCCCccccCCCCEEEEEEc---CCCC-cEEEEe-----CCeEEEecCC
Q 042979 3 HPFDAQANGELSLSIDDYVVVCQV---APTG-WSEGEC-----KGQAGWFPLA 46 (72)
Q Consensus 3 ~~~~~~~~~~l~~~~g~~i~v~~~---~~~~-w~~~~~-----~g~~G~~P~~ 46 (72)
|.|+...+..|.|.+|+++.++.. ...| |...+. .-..|++|..
T Consensus 511 FE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 511 FECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred eeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 456778889999999999988743 2334 544442 1245888853
No 63
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=65.34 E-value=12 Score=16.90 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=19.6
Q ss_pred cccCCCCEEEEEEcCCC-CcEEEEeCCeEEEec
Q 042979 13 LSLSIDDYVVVCQVAPT-GWSEGECKGQAGWFP 44 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~-~w~~~~~~g~~G~~P 44 (72)
-.+..|.-+.|++...+ .|..+......||++
T Consensus 21 s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~ 53 (54)
T PF12913_consen 21 SALHPGTPVYILHTSRDGAWAFVQTPFYSGWVK 53 (54)
T ss_dssp EEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEE
T ss_pred cccCCCCCEEEEEECCCCCEEEEecCCeeEeee
Confidence 44677888888866544 577777777888875
No 64
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=65.24 E-value=15 Score=17.84 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=16.1
Q ss_pred cccCCCCEEEEEEcC------CCCcEEEE
Q 042979 13 LSLSIDDYVVVCQVA------PTGWSEGE 35 (72)
Q Consensus 13 l~~~~g~~i~v~~~~------~~~w~~~~ 35 (72)
|.++.|+.+.+.... +..||-|.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEE
Confidence 678889988655332 35799887
No 65
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=50.26 E-value=26 Score=16.22 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=11.6
Q ss_pred cCCCCEEEEEEcCC---CCcEEEE
Q 042979 15 LSIDDYVVVCQVAP---TGWSEGE 35 (72)
Q Consensus 15 ~~~g~~i~v~~~~~---~~w~~~~ 35 (72)
|++|+.+.|..... ..|+.++
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~ 24 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPAT 24 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEE
Confidence 57888988875432 2488887
No 66
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=28.73 E-value=1e+02 Score=20.79 Aligned_cols=34 Identities=18% Similarity=0.512 Sum_probs=24.2
Q ss_pred CCEEEEEEc-----CCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979 18 DDYVVVCQV-----APTGWSEGE-CKGQAGWFPLAYVERQ 51 (72)
Q Consensus 18 g~~i~v~~~-----~~~~w~~~~-~~g~~G~~P~~~v~~~ 51 (72)
|+.+.|... .+-.|.... .+|..||+...++..+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPF 414 (549)
T ss_pred CceEEEcccccccccCcceEEEEecCCccceeeeeeeeec
Confidence 555555432 223698888 6999999988888876
No 67
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=26.35 E-value=69 Score=13.71 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=14.4
Q ss_pred cCCCCEEEEEEcCCCCcEEEEe
Q 042979 15 LSIDDYVVVCQVAPTGWSEGEC 36 (72)
Q Consensus 15 ~~~g~~i~v~~~~~~~w~~~~~ 36 (72)
+..|+.+.+.- .+..|++++.
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEE
Confidence 56677765555 5677999883
No 68
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=25.57 E-value=2.1 Score=24.14 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=21.8
Q ss_pred ccccCCCCEEEEE-EcCCCCcEEEE-eCCeEEEecC
Q 042979 12 ELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPL 45 (72)
Q Consensus 12 ~l~~~~g~~i~v~-~~~~~~w~~~~-~~g~~G~~P~ 45 (72)
...-..|.++.++ +....||..|- ..|+.|+|++
T Consensus 54 ~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhglf~s 89 (179)
T PF03894_consen 54 EHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGLFAS 89 (179)
T ss_dssp TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred hhcccCCeeeeecCHHHHHHHHHHHHhcCCcccccc
Confidence 4445557777766 34456888887 7999999975
No 69
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT). However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.
Probab=24.69 E-value=1.3e+02 Score=17.58 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=17.3
Q ss_pred CCCCcEEEEeCCeEEEecCCCeEEc
Q 042979 27 APTGWSEGECKGQAGWFPLAYVERQ 51 (72)
Q Consensus 27 ~~~~w~~~~~~g~~G~~P~~~v~~~ 51 (72)
....||...-....|++|......+
T Consensus 115 ~~gnWWL~~~~~~IGYwP~sLF~~l 139 (229)
T PF03080_consen 115 KSGNWWLYYGGEPIGYWPKSLFTSL 139 (229)
T ss_pred CCccEEEEEecceeeeehHHhhhhh
Confidence 3446888765558899998766543
No 70
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=24.48 E-value=76 Score=16.85 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=10.7
Q ss_pred CccccCCCCEEEEEE
Q 042979 11 GELSLSIDDYVVVCQ 25 (72)
Q Consensus 11 ~~l~~~~g~~i~v~~ 25 (72)
..|.+++||.|.|+.
T Consensus 16 TGl~lk~GD~IsIvA 30 (121)
T PF07828_consen 16 TGLILKAGDIISIVA 30 (121)
T ss_dssp EEEEE-TT-EEEEEE
T ss_pred eeEEEcCCCEEEEEE
Confidence 458999999999874
No 71
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=22.18 E-value=89 Score=14.92 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=13.0
Q ss_pred ccCCCCEEEEEEcCCCCcEE
Q 042979 14 SLSIDDYVVVCQVAPTGWSE 33 (72)
Q Consensus 14 ~~~~g~~i~v~~~~~~~w~~ 33 (72)
.+++|+.+.|++. .+.|+.
T Consensus 2 ~i~rGskVrIlR~-ESYWyn 20 (71)
T PRK02749 2 AISRGDKVRILRP-ESYWYN 20 (71)
T ss_pred ccccCCEEEEccc-cceeec
Confidence 3678888888876 355653
No 72
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=1.4e+02 Score=16.74 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=16.1
Q ss_pred EEEcCCCCcEEEEeCCeEEEec
Q 042979 23 VCQVAPTGWSEGECKGQAGWFP 44 (72)
Q Consensus 23 v~~~~~~~w~~~~~~g~~G~~P 44 (72)
.+.+.+..|++.+.+|..||+.
T Consensus 136 sl~~C~g~wC~~~~~g~~GWi~ 157 (171)
T COG3807 136 SLKKCKGQWCRLTAKGYSGWIS 157 (171)
T ss_pred EecccccceEEEEccCccceee
Confidence 3455666788888888888864
No 73
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=21.04 E-value=1e+02 Score=14.88 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=11.5
Q ss_pred cccCCCCEEEEEEcCCC
Q 042979 13 LSLSIDDYVVVCQVAPT 29 (72)
Q Consensus 13 l~~~~g~~i~v~~~~~~ 29 (72)
+.+++||++.|.+.+..
T Consensus 47 ~g~k~GdVvkI~R~S~t 63 (74)
T PF01191_consen 47 LGAKPGDVVKIIRKSET 63 (74)
T ss_dssp TT--TTSEEEEEEEETT
T ss_pred cCCCCCCEEEEEecCCC
Confidence 67899999999876443
No 74
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=20.32 E-value=1e+02 Score=14.41 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=12.4
Q ss_pred cCCCCEEEEEEcCCCCcEE
Q 042979 15 LSIDDYVVVCQVAPTGWSE 33 (72)
Q Consensus 15 ~~~g~~i~v~~~~~~~w~~ 33 (72)
+++|+.+.|++. .+.|+.
T Consensus 2 i~rGskVrIlR~-ESYWyn 19 (64)
T CHL00125 2 VKRGSKVRILRK-ESYWYN 19 (64)
T ss_pred cccCCEEEEccc-cceeec
Confidence 567888888876 355654
Done!