BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042981
(876 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 21/119 (17%)
Query: 491 LFSKLACFRALVIGQRNFIFDPYPNLIREIPENV-RKLIHLKYLNLSELCIERLPKTLCE 549
+F KL + LV+ + N ++ +P+ V KL +L YLNL+ ++ LPK + +
Sbjct: 104 VFDKLTNLKELVLVE---------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154
Query: 550 -LYNLQKLDIRWCEDLRELPAGI----GKLKKMRSLLNGGTPLLKYMPIGI-SKLTSLR 602
L NL +LD+ + L+ LP G+ +LK +R N LK +P G+ +LTSL+
Sbjct: 155 KLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQ----LKSVPDGVFDRLTSLQ 208
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 517 IREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKK 576
IR +P ++ L +LK L + + L + L L++LD+R C LR P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 577 MRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESL 624
++ L+ L +P+ I +LT LEK + G V+ RL SL
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQ---LEKLDLRGCVN---LSRLPSL 296
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 517 IREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP-------- 568
+ E+P+ ++ L+ L L+ + LP ++ L L++L IR C +L ELP
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 569 ----AGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLE 605
G+ L+ +R G ++ +P I+ L +L++L+
Sbjct: 176 SGEHQGLVNLQSLRLEWTG----IRSLPASIANLQNLKSLK 212
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 32/227 (14%)
Query: 519 EIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMR 578
+ P+ +L HL++ + + LP T + L+ L + LR LPA I L ++R
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLR 153
Query: 579 SLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLE---------SLKNLQL 629
L P L +P L + + G+ ++ + RLE S+ NLQ
Sbjct: 154 ELSIRACPELTELP------EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207
Query: 630 LRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNV 689
L+ I S +S L +H++ L E D G R + P +
Sbjct: 208 LKSLKIRN-SPLSALGP----AIHHLPKL----EELDLRGCTALRNYPPIFGGRAP---L 255
Query: 690 KELGIVSYGGNI--FPKWLTSLTNLRDLRLKSCVICEHFPPL-GKLP 733
K L I+ N+ P + LT L L L+ CV P L +LP
Sbjct: 256 KRL-ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 206 LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVA-RMMGSTNIIFIEQ-LTEEESF 263
LDDVWD W LK +ILLTTR++SV +MG ++ +E L +E+
Sbjct: 242 LDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL 292
Query: 264 SGRS-FEDCEK--LEPIGRKIARKCKGLPLAAKATGNLLR 300
S F + +K L I ++CKG PL G LLR
Sbjct: 293 EILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 206 LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVA-RMMGSTNIIFIEQ-LTEEESF 263
LDDVWD P+ LK + +ILLTTR++SV +MG +++ +E L E+
Sbjct: 242 LDDVWD-------PWV--LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGL 292
Query: 264 SGRSF---EDCEKLEPIGRKIARKCKGLPLAAKATGNLLR 300
S E L I ++CKG PL G LLR
Sbjct: 293 EILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 206 LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVA-RMMGSTNIIFIEQ-LTEEESF 263
LDDVWD W LK +ILLTTR++SV +MG ++ +E L +E+
Sbjct: 248 LDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL 298
Query: 264 SGRS-FEDCEK--LEPIGRKIARKCKGLPLAAKATGNLLR 300
S F + +K L I ++CKG PL G LLR
Sbjct: 299 EILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 206 LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVA-RMMGSTNIIFIEQ-LTEEESF 263
LDDVWD P+ LK + +ILLTT ++SV +MG +++ +E L E+
Sbjct: 249 LDDVWD-------PWV--LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGL 299
Query: 264 SGRSF---EDCEKLEPIGRKIARKCKGLPLAAKATGNLLR 300
S E L I ++CKG PL G LLR
Sbjct: 300 EILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|2DWK|A Chain A, Crystal Structure Of The Run Domain Of Mouse Rap2
Interacting Protein X
Length = 180
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 211 DGDYNKWEPFF----HCLKHGLHGSKILLTTRNESVARMMGSTNIIFIEQLTEEESFSGR 266
D DY + FF HCLKHGL K L +N+S G + +E+L E +
Sbjct: 38 DSDYAPLQQFFVVXEHCLKHGLKAKKTFL-GQNKS---FWGPLEL--VEKLVPEAAEITA 91
Query: 267 SFEDCEKLE-PIGR-----KIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVE 320
S +D L+ P+GR ++A K L KA L+ K +L E+ + E
Sbjct: 92 SVKDLPGLKTPVGRGRAWLRLALXQKKLSEYXKA---LINKKELLSEFYEV---NALXXE 145
Query: 321 EIGQGLFAPLLLSYNDLPSN 340
E G + A LL+ N + +N
Sbjct: 146 EEG-AIIAGLLVGLNVIDAN 164
>pdb|2ZIU|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
pdb|2ZIV|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 311
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 29 VFARLKLQIEGVDDDNAFSLAPHKKNVRSFFRAVSNC 65
VFAR +QI GV D A ++ H V S +A C
Sbjct: 234 VFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKC 270
>pdb|2DWG|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
P2(1)2(1)2(1) Space Group
pdb|2DWG|B Chain B, Run Domain Of Rap2 Interacting Protein X, Crystallized In
P2(1)2(1)2(1) Space Group
Length = 180
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 206 LDDVWDGDYNKWEPFF----HCLKHGLHGSKILLTTRNESVARMMGSTNIIFIEQLTEEE 261
L D DY + FF HCLKHGL K L +N+S + +E+L E
Sbjct: 33 LGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFL-GQNKSFW-----GPLELVEKLVPEA 86
Query: 262 SFSGRSFEDCEKLE-PIGR-----KIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSE 315
+ S +D L+ P+GR ++A K L KA L+ K +L E+ +
Sbjct: 87 AEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKA---LINKKELLSEFYEV---N 140
Query: 316 MWKVEEIGQGLFAPLLLSYNDLPSN 340
+EE G + A LL+ N + +N
Sbjct: 141 ALMMEEEG-AIIAGLLVGLNVIDAN 164
>pdb|2CXF|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
C2 Space Group
pdb|2CXL|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
I422 Space Group
Length = 190
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 211 DGDYNKWEPFF----HCLKHGLHGSKILLTTRNESVARMMGSTNIIFIEQLTEEESFSGR 266
D DY + FF HCLKHGL K L +N+S G + +E+L E +
Sbjct: 38 DSDYAPLQQFFVVXEHCLKHGLKAKKTFL-GQNKS---FWGPLEL--VEKLVPEAAEITA 91
Query: 267 SFEDCEKLE-PIGR-----KIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVE 320
S +D L+ P+GR ++A K L KA L+ K +L E+ + E
Sbjct: 92 SVKDLPGLKTPVGRGRAWLRLALXQKKLSEYXKA---LINKKELLSEFYEV---NALXXE 145
Query: 321 EIGQGLFAPLLLSYNDLPSN 340
E G + A LL+ N + +N
Sbjct: 146 EEG-AIIAGLLVGLNVIDAN 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 515 NLIREIPENV-RKLIHLKYLNLSELCIERLPKTLCE-LYNLQKLDIRWCEDLRELPAGI- 571
N ++ +P V KL L YLNLS ++ LP + + L L++L + L+ LP G+
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVF 120
Query: 572 ---GKLKKMRSLLNGGTPLLKYMPIGI-SKLTSLR 602
+LK +R N LK +P G+ +LTSL+
Sbjct: 121 DKLTQLKDLRLYQNQ----LKSVPDGVFDRLTSLQ 151
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 14 LKDASYDMEDVLDEWVFARLKLQIEGVDDDNAFSLAPHKKNVR---SFFRAVSNCFGSFK 70
L D + D+E +D + RL +++ + + + F +K N++ F+ +S C
Sbjct: 40 LDDCTCDVE-TIDRFNNYRLFPRLQKLLESDYFRY--YKVNLKRPCPFWNDISQCG---- 92
Query: 71 QLSLRQDIAVKIREINEKPDDIASQKDRFKFVENVSNHVKKPKQARTTSLIDEG 124
R+D AVK + +E PD I S +K+ E +N +++ +QA +DE
Sbjct: 93 ----RRDCAVKPAQSDEVPDGIKSAS--YKYSEEANNLIEEAEQAERLGAVDES 140
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 14 LKDASYDMEDVLDEWVFARLKLQIEGVDDDNAFSLAPHKKNVR---SFFRAVSNCFGSFK 70
L D + D+E +D + RL +++ + + + F +K N++ F+ +S C
Sbjct: 40 LDDCTCDVE-TIDRFNNYRLFPRLQKLLESDYFRY--YKVNLKRPCPFWNDISQCG---- 92
Query: 71 QLSLRQDIAVKIREINEKPDDIASQKDRFKFVENVSNHVKKPKQARTTSLIDEG 124
R+D AVK + +E PD I S +K+ E +N +++ +QA +DE
Sbjct: 93 ----RRDAAVKPAQSDEVPDGIKSAS--YKYSEEANNLIEECEQAERLGAVDES 140
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 586 PLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLD 645
P + G+ K T RT+ + +GGG DIS ++ + + G +++ D
Sbjct: 172 PTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231
Query: 646 EDERL 650
D RL
Sbjct: 232 FDSRL 236
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 2 QQDKVVTFWLDQLKDASYDMEDVLDEWVFARLKLQIEGV-DDDNAFSLAPHKKNVRSFFR 60
Q D W D++++ SY +EDV+D+++ +Q++G+ DDN K +
Sbjct: 52 QLDSQDKLWADEVRELSYVIEDVVDKFL-----VQVDGIKSDDNNNKFKGLXKRTTELLK 106
Query: 61 AVSNCFG 67
V + G
Sbjct: 107 KVKHKHG 113
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 586 PLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLD 645
P + G+ K T RT+ + +GGG DIS ++ + + G +++ D
Sbjct: 172 PTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231
Query: 646 EDERL 650
D RL
Sbjct: 232 FDSRL 236
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 586 PLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLD 645
P + G+ K T RT+ + +GGG DIS ++ + + G +++ D
Sbjct: 172 PTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231
Query: 646 EDERL 650
D RL
Sbjct: 232 FDSRL 236
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 503 IGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCE 562
+ Q + F Y N+ ++ L +++YLNL + +L L + +W +
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLK 339
Query: 563 DLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604
L L + ++S + G LKY+ + S TSLRTL
Sbjct: 340 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS-FTSLRTL 380
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 503 IGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCE 562
+ Q + F Y N+ ++ L +++YLNL + +L L + +W +
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLK 334
Query: 563 DLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604
L L + ++S + G LKY+ + S TSLRTL
Sbjct: 335 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS-FTSLRTL 375
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 503 IGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCE 562
+ Q + F Y N+ ++ L +++YLNL + +L L + +W +
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLK 329
Query: 563 DLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604
L L + ++S + G LKY+ + S TSLRTL
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS-FTSLRTL 370
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 658 LLRLSLEFDEEGEEGRRKNQQLLEALQPP------LNVKELGIVSYGGNIFPKWLTSLTN 711
L LSL +E G+ G +L+ LQ P L+++ G+ G I P L SL+
Sbjct: 54 LTELSLRTNELGDGGVGL---VLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLST 110
Query: 712 LRDLRL 717
LR+L L
Sbjct: 111 LRELHL 116
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 20/220 (9%)
Query: 515 NLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELY-NLQKLDIR--WCEDLRELPAGI 571
N++ E+PE L +L +L + L KTL +L +L+ L++R + DL ELP +
Sbjct: 225 NILEELPE----LQNLPFLT-TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSL 279
Query: 572 GKLKKMRSLLNGGT---PLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQ 628
L ++ +G + P L Y+ +++ SL L V + L +L
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL 339
Query: 629 LLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDE--EGEEGRRKNQQLLEALQPP 686
L+ V L ++ + LH N LR EF + E E R N L E + P
Sbjct: 340 ERLIASFNHLAEVPELPQNLK-QLHVEYNPLR---EFPDIPESVEDLRMNSHLAEVPELP 395
Query: 687 LNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHF 726
N+K+L + + FP S + DLR+ S + + +
Sbjct: 396 QNLKQLHVETNPLREFPDIPES---VEDLRMNSERVVDPY 432
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
Length = 221
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 613 VDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEG 672
VD++ T R +L + I+G + V+++ +D +GL + +++ F + +
Sbjct: 95 VDEMVTVRDITLTSTSEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQF---FAQRPQVQ 151
Query: 673 RRKNQQLLEALQPPLNVKELGI 694
R QQ+L ALQ L + +
Sbjct: 152 ERLTQQILIALQTLLGTNNVAV 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,279,486
Number of Sequences: 62578
Number of extensions: 960038
Number of successful extensions: 2193
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 34
length of query: 876
length of database: 14,973,337
effective HSP length: 107
effective length of query: 769
effective length of database: 8,277,491
effective search space: 6365390579
effective search space used: 6365390579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)