Query 042981
Match_columns 876
No_of_seqs 640 out of 4294
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-81 2.6E-86 732.2 37.8 680 4-736 54-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-64 5.6E-69 621.9 41.9 709 80-872 134-944 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.8E-40 1.5E-44 348.0 7.1 242 129-378 1-286 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.6E-30 7.7E-35 319.8 19.5 280 443-743 69-367 (968)
5 PLN00113 leucine-rich repeat r 100.0 4.1E-29 8.8E-34 310.3 15.9 399 443-876 164-589 (968)
6 KOG0444 Cytoskeletal regulator 99.9 6.5E-28 1.4E-32 253.3 -2.9 337 443-845 32-377 (1255)
7 KOG4194 Membrane glycoprotein 99.9 3.4E-25 7.3E-30 231.9 3.7 170 687-865 269-446 (873)
8 KOG0444 Cytoskeletal regulator 99.9 3.7E-26 7.9E-31 240.2 -6.7 336 442-837 54-393 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.8E-24 3.9E-29 226.5 5.0 362 442-869 51-427 (873)
10 PLN03210 Resistant to P. syrin 99.9 5.2E-22 1.1E-26 246.4 26.7 349 442-846 557-946 (1153)
11 KOG0472 Leucine-rich repeat pr 99.9 2E-24 4.4E-29 216.7 -5.4 240 442-722 67-309 (565)
12 KOG0618 Serine/threonine phosp 99.8 2.2E-22 4.8E-27 222.4 -3.9 276 448-749 3-327 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 2.3E-21 5E-26 194.9 -4.3 334 447-843 164-541 (565)
14 KOG0618 Serine/threonine phosp 99.8 2.8E-20 6.1E-25 206.0 -4.7 378 444-871 46-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 167.8 13.5 258 496-845 201-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 166.5 14.5 262 445-826 203-465 (788)
17 KOG4237 Extracellular matrix p 99.5 7.8E-16 1.7E-20 155.4 -0.8 377 441-867 65-497 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 9E-14 2E-18 161.5 9.9 132 443-604 178-309 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 1.3E-13 2.8E-18 160.3 8.8 245 496-842 178-427 (754)
20 KOG0617 Ras suppressor protein 99.4 3.4E-15 7.4E-20 133.4 -4.4 166 526-733 31-196 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.4 1.7E-13 3.7E-18 161.7 5.5 153 463-636 520-676 (889)
22 KOG4237 Extracellular matrix p 99.4 2.4E-14 5.1E-19 144.8 -2.8 133 454-604 57-193 (498)
23 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.6E-19 129.9 -5.0 154 461-637 28-182 (264)
24 cd00116 LRR_RI Leucine-rich re 99.2 1E-12 2.2E-17 142.1 -2.4 96 488-587 15-120 (319)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.4E-11 2.9E-16 133.3 4.3 126 459-588 16-150 (319)
26 KOG0532 Leucine-rich repeat (L 98.8 2.3E-10 5E-15 121.6 -3.9 101 492-604 94-194 (722)
27 KOG0532 Leucine-rich repeat (L 98.8 2.5E-10 5.4E-15 121.4 -4.1 133 445-596 77-209 (722)
28 KOG3207 Beta-tubulin folding c 98.7 4.1E-09 8.8E-14 109.0 2.1 215 525-819 118-339 (505)
29 COG4886 Leucine-rich repeat (L 98.6 1.6E-08 3.6E-13 112.5 4.1 102 492-604 112-214 (394)
30 PF14580 LRR_9: Leucine-rich r 98.6 2E-08 4.4E-13 95.2 3.9 130 463-611 16-152 (175)
31 PRK04841 transcriptional regul 98.6 4.9E-07 1.1E-11 112.5 17.4 254 135-421 21-332 (903)
32 PRK00080 ruvB Holliday junctio 98.6 1E-07 2.2E-12 102.5 8.9 249 124-390 25-324 (328)
33 KOG3207 Beta-tubulin folding c 98.6 1.6E-08 3.4E-13 104.8 1.9 151 442-604 120-276 (505)
34 PF14580 LRR_9: Leucine-rich r 98.6 5.3E-08 1.1E-12 92.4 4.4 123 442-583 18-148 (175)
35 COG4886 Leucine-rich repeat (L 98.5 7.5E-08 1.6E-12 107.2 3.7 186 513-724 101-291 (394)
36 KOG1909 Ran GTPase-activating 98.5 1.8E-08 3.8E-13 101.7 -1.7 92 492-587 26-132 (382)
37 TIGR00635 ruvB Holliday juncti 98.5 9.9E-07 2.2E-11 94.3 11.4 168 124-297 4-203 (305)
38 KOG1259 Nischarin, modulator o 98.4 6.1E-08 1.3E-12 95.3 0.5 76 526-604 282-357 (490)
39 PRK00411 cdc6 cell division co 98.4 5E-06 1.1E-10 92.5 15.6 205 122-339 28-296 (394)
40 KOG1909 Ran GTPase-activating 98.4 1.1E-08 2.3E-13 103.2 -5.4 173 522-723 24-226 (382)
41 PF13855 LRR_8: Leucine rich r 98.4 3.9E-07 8.5E-12 70.7 4.2 57 529-585 2-59 (61)
42 KOG1259 Nischarin, modulator o 98.3 6.9E-08 1.5E-12 94.9 -0.8 127 442-587 283-411 (490)
43 PLN03150 hypothetical protein; 98.3 6.2E-07 1.3E-11 104.6 6.8 92 497-597 419-512 (623)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.9E-13 99.9 -6.3 111 652-786 256-373 (419)
45 COG2256 MGS1 ATPase related to 98.3 2.6E-06 5.7E-11 88.3 9.5 123 121-262 27-168 (436)
46 PRK06893 DNA replication initi 98.3 3.7E-06 8E-11 85.2 10.3 138 151-290 39-198 (229)
47 PF05729 NACHT: NACHT domain 98.3 2E-06 4.3E-11 82.8 8.0 111 152-262 1-155 (166)
48 KOG4341 F-box protein containi 98.2 6.2E-08 1.3E-12 99.9 -3.6 286 525-865 161-459 (483)
49 TIGR03015 pepcterm_ATPase puta 98.2 1.2E-05 2.5E-10 84.4 13.4 145 151-299 43-242 (269)
50 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 67.6 4.5 58 496-562 1-60 (61)
51 PLN03150 hypothetical protein; 98.2 2.2E-06 4.7E-11 100.1 8.0 108 467-589 419-529 (623)
52 PF01637 Arch_ATPase: Archaeal 98.1 3.9E-06 8.3E-11 86.0 6.7 43 126-174 1-43 (234)
53 PRK05564 DNA polymerase III su 98.1 2.1E-05 4.5E-10 84.1 11.2 164 124-295 4-190 (313)
54 PF13173 AAA_14: AAA domain 98.1 1.1E-05 2.5E-10 73.5 7.9 106 151-261 2-126 (128)
55 PRK15386 type III secretion pr 98.1 1.1E-05 2.3E-10 86.2 8.1 62 527-593 51-112 (426)
56 PRK13342 recombination factor 98.0 3.4E-05 7.4E-10 85.7 12.5 159 124-296 12-197 (413)
57 PF05496 RuvB_N: Holliday junc 98.0 8.3E-06 1.8E-10 79.1 6.3 166 124-295 24-221 (233)
58 KOG4341 F-box protein containi 98.0 3.7E-07 8.1E-12 94.3 -3.3 306 466-837 138-459 (483)
59 KOG0531 Protein phosphatase 1, 98.0 9.8E-07 2.1E-11 98.4 -0.7 100 492-604 91-191 (414)
60 KOG2028 ATPase related to the 98.0 2E-05 4.3E-10 80.1 7.8 108 148-262 159-286 (554)
61 TIGR03420 DnaA_homol_Hda DnaA 97.9 3.7E-05 8.1E-10 78.2 9.5 125 130-262 23-164 (226)
62 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 96.8 -1.1 191 494-722 70-267 (414)
63 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 56.8 3.9 39 528-567 1-39 (44)
64 PRK09376 rho transcription ter 97.9 1.1E-05 2.5E-10 85.0 4.9 51 152-203 170-222 (416)
65 cd00009 AAA The AAA+ (ATPases 97.9 3.8E-05 8.3E-10 72.0 8.2 107 127-241 1-131 (151)
66 KOG2120 SCF ubiquitin ligase, 97.9 8.4E-07 1.8E-11 87.5 -3.8 160 652-842 206-375 (419)
67 cd01128 rho_factor Transcripti 97.8 2.4E-05 5.2E-10 79.3 6.1 51 151-202 16-68 (249)
68 KOG2982 Uncharacterized conser 97.8 4.7E-06 1E-10 82.4 0.8 57 775-836 223-285 (418)
69 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 78.6 10.4 57 806-871 156-213 (426)
70 COG2909 MalT ATP-dependent tra 97.8 0.0003 6.6E-09 80.2 14.3 259 133-422 24-339 (894)
71 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 55.2 3.2 41 496-545 1-41 (44)
72 PRK12402 replication factor C 97.7 0.00015 3.3E-09 78.8 10.5 160 124-291 15-222 (337)
73 PRK14961 DNA polymerase III su 97.7 0.00025 5.4E-09 77.3 11.7 162 124-291 16-216 (363)
74 PF13191 AAA_16: AAA ATPase do 97.7 4.8E-05 1E-09 74.6 5.1 47 125-174 1-47 (185)
75 KOG4579 Leucine-rich repeat (L 97.6 7.2E-06 1.6E-10 71.7 -1.4 91 464-570 51-141 (177)
76 PRK14949 DNA polymerase III su 97.6 0.00034 7.3E-09 81.6 11.4 166 124-294 16-219 (944)
77 PRK14957 DNA polymerase III su 97.6 0.00035 7.5E-09 78.8 11.3 166 124-295 16-221 (546)
78 PRK07003 DNA polymerase III su 97.6 0.00034 7.3E-09 80.0 10.9 167 124-295 16-221 (830)
79 PRK08084 DNA replication initi 97.6 0.00041 8.8E-09 70.6 10.5 110 151-262 45-172 (235)
80 PRK14960 DNA polymerase III su 97.6 0.00048 1E-08 77.9 11.6 163 124-292 15-216 (702)
81 PRK06645 DNA polymerase III su 97.5 0.00056 1.2E-08 76.7 11.6 161 124-290 21-224 (507)
82 PRK14963 DNA polymerase III su 97.5 0.00048 1E-08 77.6 11.1 162 124-291 14-213 (504)
83 KOG3665 ZYG-1-like serine/thre 97.5 6.1E-05 1.3E-09 87.7 4.0 133 442-590 121-265 (699)
84 TIGR02928 orc1/cdc6 family rep 97.5 0.00015 3.2E-09 79.9 6.8 51 122-174 13-63 (365)
85 PRK12323 DNA polymerase III su 97.5 0.00043 9.4E-09 78.1 10.2 167 124-295 16-225 (700)
86 KOG1859 Leucine-rich repeat pr 97.5 4.3E-06 9.3E-11 92.2 -5.4 87 513-604 172-259 (1096)
87 PLN03025 replication factor C 97.5 0.00033 7.1E-09 75.1 9.0 132 124-262 13-163 (319)
88 KOG4579 Leucine-rich repeat (L 97.5 9.4E-06 2E-10 71.0 -2.3 72 513-585 61-133 (177)
89 COG2255 RuvB Holliday junction 97.5 0.00056 1.2E-08 68.0 9.0 167 124-293 26-221 (332)
90 PRK08118 topology modulation p 97.5 7.4E-05 1.6E-09 71.4 2.9 52 152-204 2-58 (167)
91 PRK05642 DNA replication initi 97.5 0.0013 2.9E-08 66.7 12.2 110 151-262 45-171 (234)
92 PRK08727 hypothetical protein; 97.5 0.0009 1.9E-08 68.0 10.9 109 152-262 42-167 (233)
93 PRK13341 recombination factor 97.4 0.00033 7.2E-09 82.0 8.6 125 124-262 28-173 (725)
94 KOG3665 ZYG-1-like serine/thre 97.4 6.3E-05 1.4E-09 87.6 2.7 135 528-668 122-262 (699)
95 PRK00440 rfc replication facto 97.4 0.00073 1.6E-08 72.8 10.6 160 124-291 17-199 (319)
96 PRK09087 hypothetical protein; 97.4 0.00042 9.1E-09 69.7 8.0 133 151-293 44-193 (226)
97 PRK07940 DNA polymerase III su 97.3 0.0019 4E-08 70.5 12.3 170 124-296 5-214 (394)
98 TIGR02903 spore_lon_C ATP-depe 97.3 0.00079 1.7E-08 78.2 10.0 47 124-176 154-200 (615)
99 PTZ00202 tuzin; Provisional 97.3 0.00094 2E-08 71.2 9.3 78 119-207 257-334 (550)
100 PRK14962 DNA polymerase III su 97.3 0.00099 2.1E-08 74.4 9.9 170 124-299 14-223 (472)
101 PRK14958 DNA polymerase III su 97.3 0.0011 2.3E-08 75.0 10.3 159 124-290 16-215 (509)
102 PRK08903 DnaA regulatory inact 97.3 0.0014 3.1E-08 66.5 10.3 107 150-261 41-161 (227)
103 PRK07994 DNA polymerase III su 97.3 0.0011 2.3E-08 76.2 10.2 166 124-294 16-219 (647)
104 PRK04195 replication factor C 97.3 0.0052 1.1E-07 69.8 15.5 158 124-293 14-200 (482)
105 PRK14951 DNA polymerase III su 97.3 0.0015 3.3E-08 74.8 11.0 163 124-292 16-222 (618)
106 PRK08691 DNA polymerase III su 97.3 0.0012 2.5E-08 75.6 9.9 162 124-291 16-216 (709)
107 PRK07471 DNA polymerase III su 97.3 0.0026 5.6E-08 68.8 12.1 166 123-296 18-239 (365)
108 PRK11331 5-methylcytosine-spec 97.3 0.00054 1.2E-08 74.3 6.9 68 124-199 175-242 (459)
109 PRK05896 DNA polymerase III su 97.2 0.0016 3.5E-08 73.6 10.8 168 124-297 16-223 (605)
110 PRK14964 DNA polymerase III su 97.2 0.0018 3.9E-08 72.0 11.0 161 124-290 13-212 (491)
111 TIGR00767 rho transcription te 97.2 0.00046 1E-08 73.5 5.9 52 152-204 169-222 (415)
112 TIGR02397 dnaX_nterm DNA polym 97.2 0.0024 5.2E-08 70.0 11.9 166 124-295 14-218 (355)
113 PRK14955 DNA polymerase III su 97.2 0.0013 2.8E-08 72.6 9.6 166 124-295 16-229 (397)
114 TIGR00678 holB DNA polymerase 97.2 0.0027 5.8E-08 62.3 10.5 134 151-290 14-186 (188)
115 KOG1859 Leucine-rich repeat pr 97.2 1.3E-05 2.8E-10 88.6 -6.5 126 442-587 163-291 (1096)
116 COG5238 RNA1 Ran GTPase-activa 97.2 0.0001 2.2E-09 72.2 0.3 67 521-587 51-132 (388)
117 COG3899 Predicted ATPase [Gene 97.2 0.0009 1.9E-08 80.5 8.2 222 125-358 1-325 (849)
118 PRK14956 DNA polymerase III su 97.1 0.0021 4.6E-08 70.7 10.2 161 124-289 18-216 (484)
119 PF00308 Bac_DnaA: Bacterial d 97.1 0.001 2.2E-08 66.7 7.1 133 124-262 9-171 (219)
120 PRK09111 DNA polymerase III su 97.1 0.0024 5.2E-08 73.4 10.9 163 124-292 24-230 (598)
121 PRK09112 DNA polymerase III su 97.1 0.0051 1.1E-07 66.1 12.7 168 123-296 22-241 (351)
122 PHA02544 44 clamp loader, smal 97.0 0.0018 3.8E-08 69.7 8.2 106 124-240 21-141 (316)
123 TIGR01242 26Sp45 26S proteasom 97.0 0.0007 1.5E-08 74.1 5.1 58 122-181 120-184 (364)
124 PF13401 AAA_22: AAA domain; P 97.0 0.00076 1.7E-08 61.8 4.5 57 150-206 3-62 (131)
125 KOG0989 Replication factor C, 97.0 0.0015 3.2E-08 65.8 6.6 158 124-287 36-222 (346)
126 PRK14969 DNA polymerase III su 97.0 0.0044 9.6E-08 70.6 11.0 161 124-290 16-215 (527)
127 KOG1644 U2-associated snRNP A' 97.0 0.00077 1.7E-08 63.6 3.9 33 529-561 89-123 (233)
128 COG5238 RNA1 Ran GTPase-activa 96.9 0.00025 5.4E-09 69.6 0.7 193 524-743 26-253 (388)
129 PRK14971 DNA polymerase III su 96.9 0.0038 8.1E-08 72.3 10.4 160 124-290 17-217 (614)
130 PRK14952 DNA polymerase III su 96.9 0.0066 1.4E-07 69.4 12.1 168 124-298 13-223 (584)
131 PRK07764 DNA polymerase III su 96.9 0.0048 1E-07 73.5 11.1 161 124-290 15-216 (824)
132 PRK14954 DNA polymerase III su 96.9 0.0058 1.3E-07 70.4 11.2 167 124-296 16-230 (620)
133 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00082 1.8E-08 70.9 4.0 51 124-174 51-101 (361)
134 PTZ00112 origin recognition co 96.8 0.0055 1.2E-07 70.9 9.9 52 122-174 753-804 (1164)
135 PRK14959 DNA polymerase III su 96.8 0.0072 1.6E-07 68.9 10.7 171 124-299 16-225 (624)
136 PRK14970 DNA polymerase III su 96.7 0.0082 1.8E-07 65.9 10.7 161 124-289 17-203 (367)
137 COG0593 DnaA ATPase involved i 96.7 0.022 4.7E-07 61.5 13.0 111 150-262 112-249 (408)
138 KOG2982 Uncharacterized conser 96.7 0.00092 2E-08 66.6 2.4 204 627-864 70-285 (418)
139 PRK08451 DNA polymerase III su 96.7 0.013 2.7E-07 66.1 11.6 164 124-294 14-217 (535)
140 PRK06620 hypothetical protein; 96.7 0.0039 8.4E-08 62.2 6.7 92 152-261 45-151 (214)
141 PRK14950 DNA polymerase III su 96.7 0.012 2.6E-07 68.3 11.7 163 124-293 16-219 (585)
142 PRK07133 DNA polymerase III su 96.6 0.017 3.6E-07 67.1 12.0 167 124-296 18-221 (725)
143 PRK06305 DNA polymerase III su 96.6 0.013 2.8E-07 65.5 10.8 166 124-295 17-223 (451)
144 KOG2004 Mitochondrial ATP-depe 96.5 0.0062 1.3E-07 68.2 7.8 119 75-198 353-480 (906)
145 PRK14087 dnaA chromosomal repl 96.5 0.017 3.7E-07 64.6 11.3 144 151-296 141-320 (450)
146 KOG1644 U2-associated snRNP A' 96.5 0.0035 7.6E-08 59.3 4.8 104 657-786 43-150 (233)
147 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.2E-08 58.1 3.1 21 153-173 1-21 (121)
148 PRK08116 hypothetical protein; 96.5 0.0035 7.6E-08 64.9 5.2 86 152-239 115-220 (268)
149 COG1474 CDC6 Cdc6-related prot 96.5 0.031 6.7E-07 60.4 12.5 78 124-205 17-96 (366)
150 PRK14953 DNA polymerase III su 96.4 0.028 6E-07 63.4 12.2 162 124-290 16-215 (486)
151 PF13177 DNA_pol3_delta2: DNA 96.4 0.023 5.1E-07 53.9 9.9 125 128-258 1-162 (162)
152 PRK14948 DNA polymerase III su 96.4 0.025 5.5E-07 65.6 11.9 164 124-293 16-220 (620)
153 TIGR02881 spore_V_K stage V sp 96.3 0.015 3.3E-07 60.3 9.1 49 125-173 7-64 (261)
154 PF00158 Sigma54_activat: Sigm 96.3 0.011 2.4E-07 56.3 7.1 107 126-239 1-143 (168)
155 PRK07261 topology modulation p 96.3 0.0054 1.2E-07 58.9 5.0 35 153-187 2-37 (171)
156 TIGR00362 DnaA chromosomal rep 96.3 0.019 4.1E-07 63.9 10.0 38 151-190 136-175 (405)
157 PRK14965 DNA polymerase III su 96.3 0.016 3.4E-07 67.1 9.5 133 124-262 16-183 (576)
158 PF00004 AAA: ATPase family as 96.3 0.013 2.9E-07 53.5 7.3 21 154-174 1-21 (132)
159 PRK06696 uridine kinase; Valid 96.3 0.0081 1.8E-07 60.7 6.4 42 129-173 3-44 (223)
160 COG1373 Predicted ATPase (AAA+ 96.3 0.036 7.9E-07 60.9 11.8 135 153-296 39-193 (398)
161 CHL00181 cbbX CbbX; Provisiona 96.2 0.024 5.1E-07 59.4 9.8 49 125-173 24-81 (287)
162 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 4.9E-08 37.6 1.3 21 529-549 1-21 (22)
163 PRK15455 PrkA family serine pr 96.2 0.0029 6.3E-08 70.2 3.0 49 125-173 77-125 (644)
164 COG0466 Lon ATP-dependent Lon 96.2 0.0034 7.4E-08 70.5 3.3 57 123-181 322-378 (782)
165 PRK08181 transposase; Validate 96.2 0.006 1.3E-07 62.8 4.8 86 152-240 107-209 (269)
166 PRK12422 chromosomal replicati 96.2 0.032 6.8E-07 62.2 10.8 37 151-189 141-177 (445)
167 PRK05707 DNA polymerase III su 96.1 0.035 7.6E-07 59.2 10.5 144 150-295 21-203 (328)
168 PRK12377 putative replication 96.1 0.0077 1.7E-07 61.2 5.1 86 151-238 101-204 (248)
169 KOG2739 Leucine-rich acidic nu 96.1 0.0035 7.7E-08 61.9 2.5 60 527-587 42-103 (260)
170 COG3903 Predicted ATPase [Gene 96.1 0.0067 1.5E-07 64.1 4.7 200 150-359 13-257 (414)
171 PRK00149 dnaA chromosomal repl 96.1 0.03 6.4E-07 63.2 10.1 108 151-262 148-285 (450)
172 PRK07952 DNA replication prote 96.0 0.01 2.2E-07 60.2 5.6 87 151-239 99-204 (244)
173 PRK06647 DNA polymerase III su 96.0 0.047 1E-06 62.6 11.6 133 124-262 16-183 (563)
174 TIGR02880 cbbX_cfxQ probable R 96.0 0.018 3.9E-07 60.3 7.7 21 153-173 60-80 (284)
175 PRK09183 transposase/IS protei 96.0 0.0095 2.1E-07 61.4 5.3 22 152-173 103-124 (259)
176 PF14532 Sigma54_activ_2: Sigm 96.0 0.0043 9.4E-08 57.3 2.6 101 127-240 1-110 (138)
177 PRK06921 hypothetical protein; 96.0 0.013 2.9E-07 60.5 6.3 39 151-191 117-156 (266)
178 PRK08939 primosomal protein Dn 95.9 0.017 3.6E-07 61.0 7.0 108 128-239 135-260 (306)
179 PF05621 TniB: Bacterial TniB 95.9 0.088 1.9E-06 54.2 11.8 154 132-289 45-255 (302)
180 PRK05563 DNA polymerase III su 95.9 0.062 1.4E-06 61.9 11.7 133 124-262 16-183 (559)
181 PRK07667 uridine kinase; Provi 95.9 0.016 3.4E-07 57.0 6.0 37 133-173 3-39 (193)
182 PRK14086 dnaA chromosomal repl 95.8 0.064 1.4E-06 61.1 11.4 109 152-262 315-451 (617)
183 COG1618 Predicted nucleotide k 95.8 0.009 1.9E-07 54.5 3.4 33 152-186 6-39 (179)
184 PRK06835 DNA replication prote 95.7 0.014 3E-07 62.1 5.2 86 152-239 184-288 (329)
185 TIGR02639 ClpA ATP-dependent C 95.6 0.034 7.4E-07 66.6 8.9 99 124-227 454-580 (731)
186 KOG2123 Uncharacterized conser 95.6 0.0015 3.2E-08 64.6 -2.2 99 465-581 18-123 (388)
187 PRK08058 DNA polymerase III su 95.6 0.066 1.4E-06 57.5 10.2 132 125-262 6-174 (329)
188 TIGR03345 VI_ClpV1 type VI sec 95.6 0.033 7.3E-07 67.3 8.7 50 124-173 566-618 (852)
189 PRK10865 protein disaggregatio 95.6 0.032 6.9E-07 67.7 8.5 50 124-173 568-620 (857)
190 PTZ00301 uridine kinase; Provi 95.6 0.012 2.7E-07 58.2 4.1 23 151-173 3-25 (210)
191 PF01695 IstB_IS21: IstB-like 95.6 0.011 2.5E-07 56.9 3.8 87 151-240 47-150 (178)
192 PRK06526 transposase; Provisio 95.6 0.01 2.2E-07 60.8 3.4 22 152-173 99-120 (254)
193 PRK07399 DNA polymerase III su 95.5 0.078 1.7E-06 56.2 10.2 164 124-295 4-221 (314)
194 PRK05541 adenylylsulfate kinas 95.5 0.015 3.2E-07 56.4 4.2 36 150-187 6-41 (176)
195 PF05673 DUF815: Protein of un 95.5 0.054 1.2E-06 53.9 8.1 99 122-226 25-133 (249)
196 COG0542 clpA ATP-binding subun 95.5 0.029 6.3E-07 65.2 7.1 109 124-238 491-642 (786)
197 KOG2739 Leucine-rich acidic nu 95.4 0.011 2.4E-07 58.6 3.0 61 805-867 90-152 (260)
198 TIGR00763 lon ATP-dependent pr 95.4 0.02 4.4E-07 68.9 6.0 50 124-173 320-369 (775)
199 PF02562 PhoH: PhoH-like prote 95.4 0.021 4.5E-07 55.8 4.9 53 128-188 4-56 (205)
200 TIGR03346 chaperone_ClpB ATP-d 95.4 0.046 1E-06 66.6 9.0 114 124-239 565-717 (852)
201 COG0572 Udk Uridine kinase [Nu 95.4 0.019 4.2E-07 56.0 4.4 24 150-173 7-30 (218)
202 PRK06090 DNA polymerase III su 95.4 0.22 4.7E-06 52.7 12.6 153 132-296 11-202 (319)
203 PF00485 PRK: Phosphoribulokin 95.3 0.012 2.7E-07 57.9 3.1 21 153-173 1-21 (194)
204 COG1222 RPT1 ATP-dependent 26S 95.3 0.11 2.3E-06 54.1 9.7 51 124-174 151-208 (406)
205 KOG2543 Origin recognition com 95.3 0.041 8.9E-07 57.5 6.7 76 123-206 5-80 (438)
206 TIGR02640 gas_vesic_GvpN gas v 95.3 0.061 1.3E-06 55.8 8.1 21 153-173 23-43 (262)
207 KOG4252 GTP-binding protein [S 95.2 0.071 1.5E-06 49.0 7.2 108 153-293 22-130 (246)
208 PRK05480 uridine/cytidine kina 95.2 0.016 3.4E-07 58.0 3.4 24 150-173 5-28 (209)
209 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.2E-07 52.9 2.9 20 154-173 1-20 (129)
210 PRK14088 dnaA chromosomal repl 95.2 0.039 8.4E-07 61.7 6.7 39 151-191 130-170 (440)
211 PRK08233 hypothetical protein; 95.1 0.016 3.5E-07 56.5 3.3 23 151-173 3-25 (182)
212 PRK11608 pspF phage shock prot 95.1 0.064 1.4E-06 57.5 8.1 46 124-173 6-51 (326)
213 TIGR00235 udk uridine kinase. 95.1 0.018 3.9E-07 57.5 3.4 24 150-173 5-28 (207)
214 KOG2123 Uncharacterized conser 95.1 0.0015 3.2E-08 64.6 -4.2 104 493-608 16-126 (388)
215 KOG3864 Uncharacterized conser 95.0 0.0015 3.3E-08 61.7 -4.0 88 772-863 121-209 (221)
216 CHL00095 clpC Clp protease ATP 94.9 0.019 4.1E-07 69.7 3.8 44 124-173 179-222 (821)
217 PRK08769 DNA polymerase III su 94.9 0.21 4.5E-06 52.9 10.9 156 131-296 11-209 (319)
218 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4.1E-07 45.5 2.3 22 153-174 1-22 (69)
219 PRK03992 proteasome-activating 94.9 0.015 3.2E-07 64.0 2.3 51 123-173 130-187 (389)
220 KOG0741 AAA+-type ATPase [Post 94.8 0.14 3E-06 55.8 9.2 130 150-285 537-704 (744)
221 CHL00095 clpC Clp protease ATP 94.8 0.071 1.5E-06 64.8 8.2 50 124-173 509-561 (821)
222 PRK06547 hypothetical protein; 94.8 0.037 7.9E-07 53.0 4.6 25 150-174 14-38 (172)
223 COG2607 Predicted ATPase (AAA+ 94.8 0.12 2.6E-06 50.6 7.9 114 122-239 58-182 (287)
224 PF13604 AAA_30: AAA domain; P 94.8 0.11 2.3E-06 51.2 8.0 47 152-201 19-65 (196)
225 TIGR03345 VI_ClpV1 type VI sec 94.8 0.024 5.3E-07 68.5 4.0 44 124-173 187-230 (852)
226 PF14516 AAA_35: AAA-like doma 94.7 0.63 1.4E-05 50.0 14.2 60 123-191 10-69 (331)
227 PRK09270 nucleoside triphospha 94.7 0.037 8E-07 56.2 4.5 25 149-173 31-55 (229)
228 PF13671 AAA_33: AAA domain; P 94.7 0.027 5.9E-07 52.3 3.3 21 153-173 1-21 (143)
229 TIGR02974 phageshock_pspF psp 94.6 0.1 2.2E-06 55.8 7.9 45 126-174 1-45 (329)
230 PRK13531 regulatory ATPase Rav 94.6 0.037 8E-07 61.0 4.5 42 124-173 20-61 (498)
231 PRK06762 hypothetical protein; 94.6 0.026 5.7E-07 54.0 3.1 22 152-173 3-24 (166)
232 PF07726 AAA_3: ATPase family 94.6 0.02 4.4E-07 50.6 2.0 27 154-182 2-28 (131)
233 COG1223 Predicted ATPase (AAA+ 94.6 0.033 7.1E-07 54.8 3.5 52 124-175 121-175 (368)
234 smart00382 AAA ATPases associa 94.5 0.035 7.5E-07 51.2 3.7 37 152-190 3-39 (148)
235 COG0470 HolB ATPase involved i 94.5 0.12 2.6E-06 55.8 8.2 126 125-256 2-167 (325)
236 TIGR02237 recomb_radB DNA repa 94.5 0.06 1.3E-06 53.8 5.5 48 150-200 11-58 (209)
237 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.04 8.6E-07 57.8 4.2 51 123-173 60-110 (358)
238 TIGR02639 ClpA ATP-dependent C 94.4 0.032 7E-07 66.8 4.0 44 124-173 182-225 (731)
239 PF13504 LRR_7: Leucine rich r 94.4 0.025 5.4E-07 30.7 1.4 17 858-875 1-17 (17)
240 PRK10865 protein disaggregatio 94.4 0.032 7E-07 67.6 4.0 44 124-173 178-221 (857)
241 TIGR01817 nifA Nif-specific re 94.4 0.16 3.4E-06 58.8 9.3 49 122-174 194-242 (534)
242 PRK03839 putative kinase; Prov 94.4 0.029 6.3E-07 54.5 2.8 21 153-173 2-22 (180)
243 PRK04040 adenylate kinase; Pro 94.3 0.035 7.6E-07 54.1 3.2 22 152-173 3-24 (188)
244 PRK10787 DNA-binding ATP-depen 94.3 0.042 9E-07 65.7 4.4 51 123-173 321-371 (784)
245 TIGR01360 aden_kin_iso1 adenyl 94.2 0.034 7.5E-07 54.4 3.1 24 150-173 2-25 (188)
246 cd02028 UMPK_like Uridine mono 94.2 0.037 8E-07 53.6 3.2 21 153-173 1-21 (179)
247 TIGR00390 hslU ATP-dependent p 94.2 0.086 1.9E-06 56.9 6.1 50 124-173 12-69 (441)
248 PRK11034 clpA ATP-dependent Cl 94.2 0.13 2.8E-06 61.1 8.1 49 125-173 459-510 (758)
249 PF01583 APS_kinase: Adenylyls 94.2 0.061 1.3E-06 50.0 4.3 35 152-188 3-37 (156)
250 TIGR00554 panK_bact pantothena 94.2 0.062 1.4E-06 55.9 4.9 25 149-173 60-84 (290)
251 PHA00729 NTP-binding motif con 94.1 0.066 1.4E-06 53.0 4.8 24 150-173 16-39 (226)
252 PRK00625 shikimate kinase; Pro 94.1 0.033 7.1E-07 53.4 2.6 20 154-173 3-22 (173)
253 PF00448 SRP54: SRP54-type pro 94.1 0.066 1.4E-06 52.5 4.6 53 151-205 1-54 (196)
254 KOG1947 Leucine rich repeat pr 94.1 0.0033 7.2E-08 72.2 -5.3 166 654-846 186-367 (482)
255 PF07724 AAA_2: AAA domain (Cd 94.0 0.076 1.6E-06 50.8 4.9 74 151-226 3-105 (171)
256 cd02024 NRK1 Nicotinamide ribo 94.0 0.034 7.3E-07 53.8 2.3 21 153-173 1-21 (187)
257 cd02025 PanK Pantothenate kina 94.0 0.032 6.9E-07 56.0 2.2 21 153-173 1-21 (220)
258 cd02023 UMPK Uridine monophosp 93.9 0.033 7.3E-07 55.1 2.3 21 153-173 1-21 (198)
259 COG1428 Deoxynucleoside kinase 93.9 0.041 9E-07 53.0 2.7 23 151-173 4-26 (216)
260 cd01123 Rad51_DMC1_radA Rad51_ 93.9 0.097 2.1E-06 53.4 5.8 51 150-200 18-72 (235)
261 PRK10751 molybdopterin-guanine 93.9 0.059 1.3E-06 51.2 3.7 24 150-173 5-28 (173)
262 PRK00889 adenylylsulfate kinas 93.9 0.051 1.1E-06 52.5 3.4 24 150-173 3-26 (175)
263 KOG3347 Predicted nucleotide k 93.8 0.072 1.6E-06 47.9 3.9 38 152-196 8-45 (176)
264 PRK10536 hypothetical protein; 93.8 0.22 4.8E-06 50.3 7.8 53 124-184 55-107 (262)
265 COG1484 DnaC DNA replication p 93.7 0.071 1.5E-06 54.7 4.3 66 151-218 105-185 (254)
266 PF03205 MobB: Molybdopterin g 93.7 0.054 1.2E-06 49.9 3.1 38 152-191 1-39 (140)
267 PF13504 LRR_7: Leucine rich r 93.7 0.041 8.8E-07 29.9 1.3 16 529-544 2-17 (17)
268 COG2019 AdkA Archaeal adenylat 93.7 0.054 1.2E-06 49.8 2.9 23 151-173 4-26 (189)
269 TIGR02322 phosphon_PhnN phosph 93.7 0.049 1.1E-06 52.9 2.9 23 152-174 2-24 (179)
270 PRK15429 formate hydrogenlyase 93.7 0.16 3.6E-06 60.6 7.9 47 124-174 376-422 (686)
271 PF13306 LRR_5: Leucine rich r 93.7 0.13 2.7E-06 46.7 5.5 82 461-560 7-90 (129)
272 PF07728 AAA_5: AAA domain (dy 93.6 0.12 2.7E-06 47.6 5.4 42 154-200 2-43 (139)
273 PRK05022 anaerobic nitric oxid 93.6 0.22 4.8E-06 57.1 8.6 48 123-174 186-233 (509)
274 PRK00131 aroK shikimate kinase 93.6 0.051 1.1E-06 52.4 3.0 23 151-173 4-26 (175)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.39 8.4E-06 44.6 8.7 23 152-174 27-49 (144)
276 TIGR03346 chaperone_ClpB ATP-d 93.6 0.059 1.3E-06 65.7 4.0 44 124-173 173-216 (852)
277 TIGR00150 HI0065_YjeE ATPase, 93.5 0.093 2E-06 47.4 4.1 24 151-174 22-45 (133)
278 TIGR03263 guanyl_kin guanylate 93.5 0.055 1.2E-06 52.6 3.0 22 152-173 2-23 (180)
279 cd01133 F1-ATPase_beta F1 ATP 93.5 0.13 2.9E-06 52.6 5.7 42 152-195 70-112 (274)
280 TIGR01359 UMP_CMP_kin_fam UMP- 93.4 0.046 1E-06 53.3 2.3 21 153-173 1-21 (183)
281 PF06309 Torsin: Torsin; Inte 93.4 0.12 2.7E-06 45.7 4.6 50 124-173 25-75 (127)
282 COG1875 NYN ribonuclease and A 93.4 0.27 5.8E-06 51.3 7.6 38 128-171 228-265 (436)
283 PRK13947 shikimate kinase; Pro 93.4 0.052 1.1E-06 52.2 2.5 21 153-173 3-23 (171)
284 COG0003 ArsA Predicted ATPase 93.4 0.11 2.3E-06 54.8 5.0 47 151-199 2-48 (322)
285 PRK03846 adenylylsulfate kinas 93.3 0.07 1.5E-06 52.7 3.4 25 149-173 22-46 (198)
286 PRK05439 pantothenate kinase; 93.3 0.11 2.4E-06 54.4 5.0 26 148-173 83-108 (311)
287 PF00910 RNA_helicase: RNA hel 93.3 0.044 9.6E-07 47.9 1.8 20 154-173 1-20 (107)
288 PRK07993 DNA polymerase III su 93.3 0.89 1.9E-05 48.7 12.0 157 131-295 9-204 (334)
289 PRK06217 hypothetical protein; 93.3 0.055 1.2E-06 52.7 2.6 22 153-174 3-24 (183)
290 PRK11034 clpA ATP-dependent Cl 93.3 0.072 1.6E-06 63.2 4.0 43 125-173 187-229 (758)
291 PHA02244 ATPase-like protein 93.3 0.21 4.6E-06 53.2 7.0 20 154-173 122-141 (383)
292 KOG1947 Leucine rich repeat pr 93.3 0.0087 1.9E-07 68.7 -3.6 164 686-874 187-367 (482)
293 PRK06871 DNA polymerase III su 93.3 0.74 1.6E-05 48.8 11.1 154 132-293 10-201 (325)
294 PF00625 Guanylate_kin: Guanyl 93.2 0.084 1.8E-06 51.4 3.7 36 151-188 2-37 (183)
295 PRK09361 radB DNA repair and r 93.2 0.13 2.9E-06 52.0 5.4 46 150-198 22-67 (225)
296 PRK05201 hslU ATP-dependent pr 93.2 0.16 3.4E-06 55.1 5.9 50 124-173 15-72 (443)
297 PF00560 LRR_1: Leucine Rich R 93.1 0.047 1E-06 32.0 1.1 21 552-573 1-21 (22)
298 PRK13949 shikimate kinase; Pro 93.1 0.065 1.4E-06 51.3 2.6 21 153-173 3-23 (169)
299 COG3640 CooC CO dehydrogenase 93.1 0.12 2.7E-06 50.4 4.5 21 153-173 2-22 (255)
300 COG0194 Gmk Guanylate kinase [ 93.1 0.095 2.1E-06 49.5 3.6 23 152-174 5-27 (191)
301 PF04665 Pox_A32: Poxvirus A32 93.1 0.11 2.3E-06 52.2 4.2 36 152-189 14-49 (241)
302 COG2884 FtsE Predicted ATPase 93.0 0.15 3.3E-06 48.1 4.9 25 152-176 29-53 (223)
303 KOG1532 GTPase XAB1, interacts 93.0 0.078 1.7E-06 52.6 3.1 26 149-174 17-42 (366)
304 cd00227 CPT Chloramphenicol (C 93.0 0.069 1.5E-06 51.6 2.8 22 152-173 3-24 (175)
305 PRK11889 flhF flagellar biosyn 93.0 0.17 3.6E-06 54.3 5.7 24 150-173 240-263 (436)
306 cd02020 CMPK Cytidine monophos 93.0 0.061 1.3E-06 50.2 2.3 21 153-173 1-21 (147)
307 cd02021 GntK Gluconate kinase 93.0 0.064 1.4E-06 50.3 2.5 21 153-173 1-21 (150)
308 cd00071 GMPK Guanosine monopho 93.0 0.074 1.6E-06 48.9 2.7 21 153-173 1-21 (137)
309 TIGR00064 ftsY signal recognit 93.0 0.13 2.7E-06 53.5 4.7 39 150-190 71-109 (272)
310 PRK06964 DNA polymerase III su 93.0 0.97 2.1E-05 48.4 11.5 85 206-296 138-226 (342)
311 COG1419 FlhF Flagellar GTP-bin 92.9 0.068 1.5E-06 57.1 2.7 41 150-191 202-243 (407)
312 cd01120 RecA-like_NTPases RecA 92.9 0.1 2.2E-06 49.5 3.8 40 153-194 1-40 (165)
313 KOG0726 26S proteasome regulat 92.9 0.76 1.6E-05 46.3 9.7 50 125-174 186-242 (440)
314 COG0467 RAD55 RecA-superfamily 92.9 0.13 2.8E-06 53.4 4.8 42 150-193 22-63 (260)
315 cd01394 radB RadB. The archaea 92.9 0.19 4E-06 50.6 5.8 43 150-194 18-60 (218)
316 cd01393 recA_like RecA is a b 92.8 0.15 3.3E-06 51.6 5.2 49 150-200 18-72 (226)
317 COG1936 Predicted nucleotide k 92.8 0.08 1.7E-06 49.2 2.6 20 153-172 2-21 (180)
318 PRK00300 gmk guanylate kinase; 92.8 0.077 1.7E-06 52.8 2.8 24 151-174 5-28 (205)
319 PRK10078 ribose 1,5-bisphospho 92.7 0.084 1.8E-06 51.6 2.9 23 152-174 3-25 (186)
320 PRK10820 DNA-binding transcrip 92.7 0.33 7.1E-06 55.8 8.1 46 124-173 204-249 (520)
321 PRK13948 shikimate kinase; Pro 92.7 0.088 1.9E-06 50.8 3.0 24 150-173 9-32 (182)
322 KOG1969 DNA replication checkp 92.7 0.25 5.3E-06 56.2 6.7 52 149-205 324-375 (877)
323 COG0563 Adk Adenylate kinase a 92.7 0.079 1.7E-06 51.0 2.6 22 153-174 2-23 (178)
324 PF03308 ArgK: ArgK protein; 92.6 0.19 4.1E-06 50.4 5.2 38 132-173 14-51 (266)
325 COG1124 DppF ABC-type dipeptid 92.6 0.14 3.1E-06 50.5 4.2 22 152-173 34-55 (252)
326 PF03193 DUF258: Protein of un 92.6 0.17 3.8E-06 47.3 4.6 36 131-175 24-59 (161)
327 PF08477 Miro: Miro-like prote 92.6 0.095 2.1E-06 46.8 2.9 22 154-175 2-23 (119)
328 cd00820 PEPCK_HprK Phosphoenol 92.6 0.11 2.3E-06 44.9 3.0 21 152-172 16-36 (107)
329 COG0703 AroK Shikimate kinase 92.6 0.089 1.9E-06 49.4 2.7 27 153-181 4-30 (172)
330 PRK05057 aroK shikimate kinase 92.6 0.088 1.9E-06 50.6 2.8 22 152-173 5-26 (172)
331 cd00464 SK Shikimate kinase (S 92.6 0.084 1.8E-06 49.7 2.6 20 154-173 2-21 (154)
332 PRK13975 thymidylate kinase; P 92.6 0.091 2E-06 51.9 3.0 22 152-173 3-24 (196)
333 PRK14530 adenylate kinase; Pro 92.5 0.085 1.8E-06 52.9 2.7 21 153-173 5-25 (215)
334 TIGR00073 hypB hydrogenase acc 92.5 0.1 2.2E-06 52.0 3.2 25 149-173 20-44 (207)
335 KOG0473 Leucine-rich repeat pr 92.5 0.008 1.7E-07 58.0 -4.4 86 492-587 38-123 (326)
336 PLN02318 phosphoribulokinase/u 92.5 0.15 3.2E-06 57.5 4.7 25 149-173 63-87 (656)
337 COG1763 MobB Molybdopterin-gua 92.4 0.096 2.1E-06 49.0 2.7 23 151-173 2-24 (161)
338 TIGR00176 mobB molybdopterin-g 92.4 0.084 1.8E-06 49.6 2.3 21 153-173 1-21 (155)
339 KOG0991 Replication factor C, 92.4 0.11 2.4E-06 50.4 3.1 64 124-194 27-91 (333)
340 PTZ00361 26 proteosome regulat 92.4 0.099 2.2E-06 57.8 3.2 56 124-181 183-245 (438)
341 TIGR03689 pup_AAA proteasome A 92.3 0.17 3.7E-06 56.9 5.1 51 124-174 182-239 (512)
342 cd02027 APSK Adenosine 5'-phos 92.3 0.088 1.9E-06 49.2 2.4 21 153-173 1-21 (149)
343 cd01672 TMPK Thymidine monopho 92.3 0.22 4.8E-06 49.2 5.5 21 153-173 2-22 (200)
344 PTZ00454 26S protease regulato 92.3 0.13 2.8E-06 56.5 4.0 51 124-174 145-202 (398)
345 PRK12339 2-phosphoglycerate ki 92.2 0.12 2.5E-06 50.8 3.2 23 151-173 3-25 (197)
346 PRK13946 shikimate kinase; Pro 92.2 0.1 2.2E-06 50.9 2.7 23 151-173 10-32 (184)
347 COG1703 ArgK Putative periplas 92.1 0.18 3.9E-06 51.3 4.3 63 134-200 38-100 (323)
348 PRK13236 nitrogenase reductase 92.0 0.13 2.9E-06 54.3 3.6 25 148-172 3-27 (296)
349 PRK14493 putative bifunctional 92.0 0.17 3.6E-06 52.4 4.2 35 152-189 2-36 (274)
350 PRK06761 hypothetical protein; 92.0 0.2 4.3E-06 51.8 4.7 23 152-174 4-26 (282)
351 PF01078 Mg_chelatase: Magnesi 92.0 0.19 4.2E-06 48.9 4.3 42 124-173 3-44 (206)
352 PF13245 AAA_19: Part of AAA d 91.9 0.33 7.2E-06 39.1 4.9 22 152-173 11-33 (76)
353 PRK05703 flhF flagellar biosyn 91.9 0.28 6.1E-06 54.4 6.0 40 151-190 221-260 (424)
354 TIGR01313 therm_gnt_kin carboh 91.8 0.098 2.1E-06 49.9 2.1 20 154-173 1-20 (163)
355 TIGR03499 FlhF flagellar biosy 91.8 0.14 2.9E-06 53.7 3.3 24 150-173 193-216 (282)
356 TIGR01287 nifH nitrogenase iro 91.8 0.11 2.4E-06 54.4 2.7 22 152-173 1-22 (275)
357 PRK14738 gmk guanylate kinase; 91.8 0.15 3.3E-06 50.6 3.5 24 150-173 12-35 (206)
358 PRK13230 nitrogenase reductase 91.7 0.12 2.7E-06 54.2 3.0 22 152-173 2-23 (279)
359 PRK10463 hydrogenase nickel in 91.7 0.39 8.4E-06 49.7 6.4 25 149-173 102-126 (290)
360 COG0237 CoaE Dephospho-CoA kin 91.7 0.13 2.9E-06 50.3 3.0 23 151-173 2-24 (201)
361 PRK13695 putative NTPase; Prov 91.7 0.15 3.3E-06 49.2 3.3 21 154-174 3-23 (174)
362 PRK13232 nifH nitrogenase redu 91.7 0.12 2.7E-06 54.0 2.9 22 152-173 2-23 (273)
363 TIGR01425 SRP54_euk signal rec 91.6 0.32 7E-06 53.4 6.0 24 150-173 99-122 (429)
364 PF00005 ABC_tran: ABC transpo 91.6 0.15 3.2E-06 46.9 3.1 23 152-174 12-34 (137)
365 cd03116 MobB Molybdenum is an 91.6 0.15 3.2E-06 48.0 3.0 22 152-173 2-23 (159)
366 PF11868 DUF3388: Protein of u 91.6 0.24 5.2E-06 44.9 4.0 52 132-194 37-90 (192)
367 PF13521 AAA_28: AAA domain; P 91.6 0.13 2.9E-06 49.0 2.7 20 154-173 2-21 (163)
368 cd02117 NifH_like This family 91.5 0.13 2.9E-06 51.4 2.8 22 152-173 1-22 (212)
369 COG1100 GTPase SAR1 and relate 91.5 0.13 2.9E-06 51.7 2.9 23 152-174 6-28 (219)
370 PRK09825 idnK D-gluconate kina 91.5 0.14 3E-06 49.3 2.8 22 152-173 4-25 (176)
371 PRK11388 DNA-binding transcrip 91.5 0.46 1E-05 56.4 7.7 47 124-174 325-371 (638)
372 PRK14737 gmk guanylate kinase; 91.4 0.17 3.6E-06 49.3 3.3 24 150-173 3-26 (186)
373 PF01926 MMR_HSR1: 50S ribosom 91.4 0.17 3.7E-06 44.9 3.1 21 154-174 2-22 (116)
374 PF10662 PduV-EutP: Ethanolami 91.4 0.15 3.2E-06 46.5 2.7 24 152-175 2-25 (143)
375 PRK04182 cytidylate kinase; Pr 91.4 0.14 3.1E-06 49.6 2.8 21 153-173 2-22 (180)
376 cd04139 RalA_RalB RalA/RalB su 91.4 0.16 3.4E-06 48.3 3.1 23 153-175 2-24 (164)
377 COG0542 clpA ATP-binding subun 91.4 0.17 3.8E-06 59.0 3.9 44 124-173 170-213 (786)
378 PF02374 ArsA_ATPase: Anion-tr 91.4 0.28 6E-06 51.9 5.1 22 152-173 2-23 (305)
379 PRK10923 glnG nitrogen regulat 91.3 0.55 1.2E-05 53.6 8.0 47 124-174 138-184 (469)
380 TIGR00602 rad24 checkpoint pro 91.3 0.21 4.5E-06 57.8 4.4 51 123-174 83-133 (637)
381 PLN02200 adenylate kinase fami 91.3 0.17 3.6E-06 51.3 3.3 24 150-173 42-65 (234)
382 PLN02348 phosphoribulokinase 91.3 0.17 3.7E-06 54.3 3.4 25 149-173 47-71 (395)
383 COG1102 Cmk Cytidylate kinase 91.3 0.13 2.8E-06 47.1 2.1 22 153-174 2-23 (179)
384 PRK14527 adenylate kinase; Pro 91.3 0.16 3.4E-06 49.9 3.0 24 150-173 5-28 (191)
385 COG1126 GlnQ ABC-type polar am 91.2 0.27 5.8E-06 47.7 4.3 34 152-188 29-62 (240)
386 cd02040 NifH NifH gene encodes 91.2 0.15 3.3E-06 53.3 3.0 22 152-173 2-23 (270)
387 COG0714 MoxR-like ATPases [Gen 91.2 0.39 8.5E-06 51.7 6.2 61 125-198 25-85 (329)
388 TIGR00041 DTMP_kinase thymidyl 91.1 0.41 9E-06 47.1 5.9 22 152-173 4-25 (195)
389 PF03266 NTPase_1: NTPase; In 91.1 0.15 3.2E-06 48.6 2.6 20 154-173 2-21 (168)
390 PRK08099 bifunctional DNA-bind 91.1 0.15 3.2E-06 56.1 2.8 25 149-173 217-241 (399)
391 cd01983 Fer4_NifH The Fer4_Nif 91.1 0.15 3.2E-06 43.4 2.3 21 153-173 1-21 (99)
392 PLN02796 D-glycerate 3-kinase 91.1 0.43 9.4E-06 50.5 6.1 24 150-173 99-122 (347)
393 PRK10416 signal recognition pa 91.1 0.19 4.1E-06 53.3 3.5 24 150-173 113-136 (318)
394 PRK14974 cell division protein 91.0 0.29 6.2E-06 52.2 4.8 24 150-173 139-162 (336)
395 PRK15453 phosphoribulokinase; 91.0 0.19 4E-06 51.5 3.2 24 150-173 4-27 (290)
396 PRK14722 flhF flagellar biosyn 91.0 0.21 4.6E-06 53.8 3.9 23 151-173 137-159 (374)
397 TIGR02173 cyt_kin_arch cytidyl 91.0 0.17 3.7E-06 48.6 2.8 21 153-173 2-22 (171)
398 PRK03731 aroL shikimate kinase 91.0 0.15 3.3E-06 49.0 2.5 22 152-173 3-24 (171)
399 PRK04301 radA DNA repair and r 90.9 0.36 7.8E-06 51.6 5.5 52 150-201 101-156 (317)
400 PRK13768 GTPase; Provisional 90.9 0.26 5.7E-06 50.7 4.2 22 152-173 3-24 (253)
401 TIGR02030 BchI-ChlI magnesium 90.9 0.25 5.5E-06 52.7 4.3 44 124-173 4-47 (337)
402 PF03029 ATP_bind_1: Conserved 90.8 0.21 4.6E-06 50.6 3.5 19 156-174 1-19 (238)
403 CHL00081 chlI Mg-protoporyphyr 90.8 0.21 4.6E-06 53.3 3.6 45 123-173 16-60 (350)
404 PRK13233 nifH nitrogenase redu 90.7 0.18 4E-06 52.8 3.1 22 152-173 3-24 (275)
405 cd03114 ArgK-like The function 90.7 0.17 3.7E-06 47.2 2.5 21 153-173 1-21 (148)
406 PLN02165 adenylate isopentenyl 90.7 0.19 4.1E-06 52.9 3.1 24 150-173 42-65 (334)
407 cd04155 Arl3 Arl3 subfamily. 90.7 0.21 4.4E-06 48.1 3.2 24 151-174 14-37 (173)
408 PRK13235 nifH nitrogenase redu 90.6 0.18 3.9E-06 52.8 2.9 22 152-173 2-23 (274)
409 TIGR02236 recomb_radA DNA repa 90.6 0.42 9.1E-06 51.0 5.8 52 150-201 94-149 (310)
410 cd02022 DPCK Dephospho-coenzym 90.6 0.16 3.5E-06 49.2 2.4 21 153-173 1-21 (179)
411 PRK15115 response regulator Gl 90.6 1.6 3.4E-05 49.5 10.7 46 125-174 135-180 (444)
412 TIGR00750 lao LAO/AO transport 90.6 0.31 6.7E-06 51.6 4.6 25 149-173 32-56 (300)
413 TIGR03574 selen_PSTK L-seryl-t 90.6 0.16 3.4E-06 52.3 2.4 20 154-173 2-21 (249)
414 PLN03046 D-glycerate 3-kinase; 90.5 0.4 8.7E-06 51.8 5.3 24 150-173 211-234 (460)
415 KOG0744 AAA+-type ATPase [Post 90.5 0.19 4.2E-06 51.3 2.7 38 151-188 177-216 (423)
416 PRK08356 hypothetical protein; 90.5 0.21 4.6E-06 49.2 3.1 21 152-172 6-26 (195)
417 PRK09435 membrane ATPase/prote 90.5 0.33 7.2E-06 51.6 4.7 36 134-173 43-78 (332)
418 PRK12727 flagellar biosynthesi 90.5 0.89 1.9E-05 51.0 8.1 24 150-173 349-372 (559)
419 KOG0727 26S proteasome regulat 90.5 0.59 1.3E-05 45.9 5.9 51 124-174 155-212 (408)
420 PRK05342 clpX ATP-dependent pr 90.5 0.26 5.7E-06 54.2 4.1 50 124-173 71-130 (412)
421 KOG0735 AAA+-type ATPase [Post 90.5 0.72 1.6E-05 52.4 7.3 40 151-191 431-470 (952)
422 cd01131 PilT Pilus retraction 90.4 0.29 6.4E-06 48.2 4.0 22 152-173 2-23 (198)
423 PRK12724 flagellar biosynthesi 90.4 0.42 9E-06 52.0 5.4 24 150-173 222-245 (432)
424 TIGR00960 3a0501s02 Type II (G 90.4 0.32 6.9E-06 48.8 4.4 22 152-173 30-51 (216)
425 cd03284 ABC_MutS1 MutS1 homolo 90.4 0.54 1.2E-05 47.0 5.9 21 152-172 31-51 (216)
426 COG4608 AppF ABC-type oligopep 90.4 0.32 7E-06 49.1 4.2 23 151-173 39-61 (268)
427 cd03269 ABC_putative_ATPase Th 90.4 0.33 7.1E-06 48.5 4.4 33 152-187 27-59 (210)
428 PRK13976 thymidylate kinase; P 90.4 0.33 7.1E-06 48.2 4.3 21 153-173 2-22 (209)
429 PRK13231 nitrogenase reductase 90.3 0.22 4.7E-06 51.9 3.1 23 151-173 2-24 (264)
430 PRK10867 signal recognition pa 90.3 0.63 1.4E-05 51.4 6.8 24 150-173 99-122 (433)
431 COG1120 FepC ABC-type cobalami 90.3 0.21 4.6E-06 50.5 2.9 23 151-173 28-50 (258)
432 PTZ00088 adenylate kinase 1; P 90.3 0.19 4.2E-06 50.5 2.6 20 154-173 9-28 (229)
433 cd00983 recA RecA is a bacter 90.3 0.39 8.4E-06 50.8 4.9 45 150-196 54-98 (325)
434 cd03225 ABC_cobalt_CbiO_domain 90.2 0.22 4.7E-06 49.8 3.0 22 152-173 28-49 (211)
435 PF13306 LRR_5: Leucine rich r 90.2 0.77 1.7E-05 41.5 6.4 112 444-577 13-128 (129)
436 cd03229 ABC_Class3 This class 90.2 0.23 4.9E-06 48.1 3.0 22 152-173 27-48 (178)
437 PRK12726 flagellar biosynthesi 90.2 0.35 7.5E-06 51.7 4.5 39 150-190 205-243 (407)
438 cd03222 ABC_RNaseL_inhibitor T 90.1 0.24 5.3E-06 47.6 3.1 22 152-173 26-47 (177)
439 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.1 0.22 4.7E-06 50.1 2.9 22 152-173 31-52 (218)
440 KOG1051 Chaperone HSP104 and r 90.1 1.1 2.4E-05 53.4 8.8 101 125-227 563-687 (898)
441 smart00173 RAS Ras subfamily o 90.1 0.23 4.9E-06 47.3 2.9 21 154-174 3-23 (164)
442 COG4107 PhnK ABC-type phosphon 90.1 0.24 5.3E-06 45.7 2.8 22 152-173 33-54 (258)
443 cd03297 ABC_ModC_molybdenum_tr 90.1 0.25 5.3E-06 49.6 3.2 23 150-173 23-45 (214)
444 TIGR00382 clpX endopeptidase C 90.1 0.38 8.2E-06 52.7 4.8 51 123-173 76-138 (413)
445 TIGR02012 tigrfam_recA protein 90.0 0.42 9.1E-06 50.4 5.0 45 150-196 54-98 (321)
446 cd01428 ADK Adenylate kinase ( 90.0 0.21 4.5E-06 49.2 2.6 20 154-173 2-21 (194)
447 TIGR01166 cbiO cobalt transpor 90.0 0.23 4.9E-06 48.7 2.8 22 152-173 19-40 (190)
448 cd04163 Era Era subfamily. Er 90.0 0.28 6.1E-06 46.5 3.5 24 151-174 3-26 (168)
449 PRK01184 hypothetical protein; 90.0 0.23 4.9E-06 48.4 2.8 18 152-169 2-19 (184)
450 cd01858 NGP_1 NGP-1. Autoanti 90.0 0.46 9.9E-06 44.9 4.8 25 151-175 102-126 (157)
451 PRK15424 propionate catabolism 90.0 0.38 8.2E-06 54.8 4.9 47 124-174 219-265 (538)
452 cd03115 SRP The signal recogni 90.0 0.35 7.6E-06 46.5 4.1 21 153-173 2-22 (173)
453 cd04119 RJL RJL (RabJ-Like) su 90.0 0.24 5.1E-06 47.2 2.9 21 154-174 3-23 (168)
454 cd01124 KaiC KaiC is a circadi 90.0 0.32 6.9E-06 47.5 3.8 37 154-192 2-38 (187)
455 cd01862 Rab7 Rab7 subfamily. 89.9 0.24 5.2E-06 47.5 2.9 21 154-174 3-23 (172)
456 PRK14532 adenylate kinase; Pro 89.9 0.22 4.7E-06 48.8 2.6 20 154-173 3-22 (188)
457 TIGR02673 FtsE cell division A 89.9 0.37 7.9E-06 48.3 4.3 33 152-187 29-61 (214)
458 TIGR02016 BchX chlorophyllide 89.9 0.22 4.8E-06 52.5 2.8 22 152-173 1-22 (296)
459 cd02026 PRK Phosphoribulokinas 89.9 0.2 4.3E-06 52.0 2.4 21 153-173 1-21 (273)
460 cd03265 ABC_DrrA DrrA is the A 89.9 0.38 8.3E-06 48.4 4.4 33 152-187 27-59 (220)
461 PF06564 YhjQ: YhjQ protein; 89.9 0.25 5.4E-06 49.7 2.9 22 152-173 2-24 (243)
462 TIGR02902 spore_lonB ATP-depen 89.9 0.34 7.4E-06 55.6 4.5 44 124-173 65-108 (531)
463 PRK00698 tmk thymidylate kinas 89.8 0.25 5.4E-06 49.1 3.0 22 152-173 4-25 (205)
464 PF00142 Fer4_NifH: 4Fe-4S iro 89.8 0.48 1E-05 47.7 4.8 41 152-194 1-41 (273)
465 cd01130 VirB11-like_ATPase Typ 89.8 0.39 8.5E-06 46.8 4.3 23 151-173 25-47 (186)
466 TIGR02329 propionate_PrpR prop 89.7 0.8 1.7E-05 52.2 7.3 47 124-174 212-258 (526)
467 smart00369 LRR_TYP Leucine-ric 89.7 0.25 5.5E-06 30.2 1.9 21 527-547 1-21 (26)
468 smart00370 LRR Leucine-rich re 89.7 0.25 5.5E-06 30.2 1.9 21 527-547 1-21 (26)
469 COG0378 HypB Ni2+-binding GTPa 89.7 0.53 1.1E-05 44.9 4.8 31 151-183 13-43 (202)
470 PRK00771 signal recognition pa 89.7 0.57 1.2E-05 51.9 5.9 24 150-173 94-117 (437)
471 PF13555 AAA_29: P-loop contai 89.7 0.36 7.8E-06 36.9 3.0 20 153-172 25-44 (62)
472 TIGR03864 PQQ_ABC_ATP ABC tran 89.7 0.39 8.5E-06 48.9 4.4 22 152-173 28-49 (236)
473 cd03264 ABC_drug_resistance_li 89.7 0.36 7.8E-06 48.2 4.0 21 153-173 27-47 (211)
474 COG0125 Tmk Thymidylate kinase 89.7 0.68 1.5E-05 45.6 5.8 50 152-203 4-53 (208)
475 KOG2227 Pre-initiation complex 89.6 0.98 2.1E-05 48.9 7.2 81 123-205 149-229 (529)
476 smart00072 GuKc Guanylate kina 89.6 0.32 7E-06 47.3 3.5 23 152-174 3-25 (184)
477 PRK13541 cytochrome c biogenes 89.5 0.27 5.9E-06 48.4 3.0 23 152-174 27-49 (195)
478 cd04113 Rab4 Rab4 subfamily. 89.5 0.27 5.9E-06 46.6 2.9 21 154-174 3-23 (161)
479 cd02034 CooC The accessory pro 89.5 0.41 8.9E-06 42.4 3.8 20 154-173 2-21 (116)
480 cd01121 Sms Sms (bacterial rad 89.5 0.91 2E-05 49.3 7.2 42 150-193 81-122 (372)
481 TIGR00455 apsK adenylylsulfate 89.5 0.32 6.9E-06 47.4 3.4 24 150-173 17-40 (184)
482 KOG3864 Uncharacterized conser 89.5 0.032 6.9E-07 53.1 -3.4 83 712-817 103-187 (221)
483 PHA02575 1 deoxynucleoside mon 89.5 0.27 5.9E-06 48.3 2.8 21 153-173 2-22 (227)
484 TIGR00231 small_GTP small GTP- 89.4 0.28 6.1E-06 45.9 2.9 23 153-175 3-25 (161)
485 TIGR01281 DPOR_bchL light-inde 89.4 0.27 5.8E-06 51.3 3.0 20 153-172 2-21 (268)
486 cd03259 ABC_Carb_Solutes_like 89.4 0.27 5.9E-06 49.2 2.9 22 152-173 27-48 (213)
487 PRK14490 putative bifunctional 89.4 0.36 7.8E-06 52.8 4.0 30 150-181 4-33 (369)
488 CHL00176 ftsH cell division pr 89.4 0.24 5.2E-06 57.8 2.8 51 124-174 183-239 (638)
489 PRK14531 adenylate kinase; Pro 89.4 0.28 6E-06 47.8 2.8 21 153-173 4-24 (183)
490 TIGR00764 lon_rel lon-related 89.3 0.63 1.4E-05 54.2 6.2 42 124-173 18-59 (608)
491 COG0529 CysC Adenylylsulfate k 89.3 0.36 7.8E-06 45.1 3.3 24 150-173 22-45 (197)
492 cd03224 ABC_TM1139_LivF_branch 89.3 0.44 9.6E-06 48.0 4.4 22 152-173 27-48 (222)
493 PF08423 Rad51: Rad51; InterP 89.3 0.68 1.5E-05 47.6 5.8 54 151-205 38-95 (256)
494 cd03261 ABC_Org_Solvent_Resist 89.3 0.28 6.1E-06 50.0 2.9 22 152-173 27-48 (235)
495 cd00879 Sar1 Sar1 subfamily. 89.2 0.29 6.4E-06 47.9 2.9 23 152-174 20-42 (190)
496 cd03293 ABC_NrtD_SsuB_transpor 89.2 0.29 6.2E-06 49.3 2.9 22 152-173 31-52 (220)
497 cd01864 Rab19 Rab19 subfamily. 89.2 0.29 6.3E-06 46.6 2.9 22 152-173 4-25 (165)
498 cd03263 ABC_subfamily_A The AB 89.2 0.29 6.2E-06 49.3 2.9 22 152-173 29-50 (220)
499 smart00175 RAB Rab subfamily o 89.2 0.3 6.5E-06 46.3 2.9 21 154-174 3-23 (164)
500 cd03235 ABC_Metallic_Cations A 89.1 0.27 5.9E-06 49.2 2.7 22 152-173 26-47 (213)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-81 Score=732.16 Aligned_cols=680 Identities=26% Similarity=0.399 Sum_probs=500.9
Q ss_pred cHHHHHHHHHHHHhHhhhhhHhhhHHHHHHHHHHhcCCCCcccccccccccccchhcccccccCCCcchhhhHHHHHHHH
Q 042981 4 DKVVTFWLDQLKDASYDMEDVLDEWVFARLKLQIEGVDDDNAFSLAPHKKNVRSFFRAVSNCFGSFKQLSLRQDIAVKIR 83 (876)
Q Consensus 4 ~~~~~~wl~~lr~~~yd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (876)
...+..|.+.+++++|++||+++.|.......+..+. ........+.. |+ ..+++..+..+.
T Consensus 54 ~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~--------l~~~~~~~~~~-----c~-----~~~~~~~~~~~~ 115 (889)
T KOG4658|consen 54 LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL--------LSTRSVERQRL-----CL-----CGFCSKNVSDSY 115 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------hhhhHHHHHHH-----hh-----hhhHhHhhhhhH
Confidence 3567899999999999999999999998866544322 00000011111 11 145566666666
Q ss_pred HHHHhHHHHHhcccccceeeccc-cC--ccCCCCCccccCccCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecC
Q 042981 84 EINEKPDDIASQKDRFKFVENVS-NH--VKKPKQARTTSLIDEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLG 160 (876)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~g 160 (876)
.+.+|+..+.+....++...... .. ......+++.+...+.. ||.+..++++++.|..++ ..+++|+|||
T Consensus 116 ~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMG 188 (889)
T KOG4658|consen 116 KYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMG 188 (889)
T ss_pred hHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCC
Confidence 66666666666666655433221 11 11122344445555555 999999999999999653 3899999999
Q ss_pred CchHHHHHHHHHcCcc-ccccCCeEEEEEeCCchhHHHHHHHHHHh--------------------------------cc
Q 042981 161 GMGKTTLAQLAYNNDE-VKRNFEKVIWVCVSDTFEEIRVANAIIEG--------------------------------LD 207 (876)
Q Consensus 161 GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--------------------------------lD 207 (876)
|+||||||++|+|+.. ++.+||.++||+||+.|+...++++|++. ||
T Consensus 189 GvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLD 268 (889)
T KOG4658|consen 189 GVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLD 268 (889)
T ss_pred cccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEe
Confidence 9999999999999988 99999999999999999999999999985 89
Q ss_pred ccccCCccChhhHHhhhccCCCCCEEEEEcCchHHHHh-hCCcceEeCCCCCcccc--ccC-----CCcCCccchHHHHH
Q 042981 208 DVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVARM-MGSTNIIFIEQLTEEES--FSG-----RSFEDCEKLEPIGR 279 (876)
Q Consensus 208 dvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~~--~f~-----~~~~~~~~l~~~~~ 279 (876)
|||++. +|+.+..++|....||||++|||++.||.. |++...++++.|+++|| +|. .....++.++++|+
T Consensus 269 DIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak 346 (889)
T KOG4658|consen 269 DIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAK 346 (889)
T ss_pred cccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHH
Confidence 999984 799999999999999999999999999998 88899999999999999 443 33345566999999
Q ss_pred HHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhcccc----ccCCcchhhHhhcccCCCCchhHHHHHhHhccCCC
Q 042981 280 KIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVE----EIGQGLFAPLLLSYNDLPSNSMVKRCFSYCAIFPK 355 (876)
Q Consensus 280 ~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~l~~sy~~L~~~~~lk~cfly~~~fp~ 355 (876)
+|+++|+|+|||++++|+.|+.|.+.++|+++.+...+.+. ...+.++++|++||++||+ ++|.||+|||+||+
T Consensus 347 ~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPE 424 (889)
T KOG4658|consen 347 EVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPE 424 (889)
T ss_pred HHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCc
Confidence 99999999999999999999999999999999997766532 2346799999999999996 99999999999999
Q ss_pred CceeChHHHHHHHHHcCccccC-CChhHHHHHHhhhhh---cccccC--CCCCCcceEEcChHHHHHHHHhcc-----cc
Q 042981 356 EYNIKKKELISLWMVQGYLNVE-EDEEIEMTGEEYFNI---SKFKKD--DDDDDIMSCKMHDIVHDFAQFVSR-----KE 424 (876)
Q Consensus 356 ~~~i~~~~li~~W~aeg~i~~~-~~~~~e~~~~~~~~~---~~~~~~--~~~~~~~~~~mHdlv~dla~~i~~-----~e 424 (876)
||+|+++.||.+||||||+... .+.++++.|..|+.+ ...... ..++.. +|+|||+|||||.++|+ ++
T Consensus 425 D~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~-~~kmHDvvRe~al~ias~~~~~~e 503 (889)
T KOG4658|consen 425 DYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE-TVKMHDVVREMALWIASDFGKQEE 503 (889)
T ss_pred ccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee-EEEeeHHHHHHHHHHhcccccccc
Confidence 9999999999999999999884 458999999999988 111111 114445 99999999999999999 66
Q ss_pred eEEEEeC-CccceecccCCCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEec
Q 042981 425 CLWVEIN-GTKESVINSFGDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVI 503 (876)
Q Consensus 425 ~~~~~~~-~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L 503 (876)
.+.+..+ +....+....+..+|++++.++.+..++... .+++|++|.+..+.. ....+...+|..++.||+|||
T Consensus 504 ~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 504 NQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred ceEEECCcCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecch----hhhhcCHHHHhhCcceEEEEC
Confidence 6555433 2222333344678999999999887665543 566899999987741 134556777999999999999
Q ss_pred CccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecC
Q 042981 504 GQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNG 583 (876)
Q Consensus 504 ~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 583 (876)
++ +-.+.++|++|++|.+||||+|+++.|..+|.++++|+.|++||+..+..+..+|..+..|++||+|.+.
T Consensus 579 s~--------~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 579 SG--------NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred CC--------CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 42 2356789999999999999999999999999999999999999999997777777777789999999987
Q ss_pred CCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEE
Q 042981 584 GTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSL 663 (876)
Q Consensus 584 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 663 (876)
.... ..-...++.+.+|++|..+.+.... ...+..+..+..|+.+.+.-... ..........+..+.+|+.|.+
T Consensus 651 ~s~~-~~~~~~l~el~~Le~L~~ls~~~~s----~~~~e~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 651 RSAL-SNDKLLLKELENLEHLENLSITISS----VLLLEDLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSI 724 (889)
T ss_pred cccc-ccchhhHHhhhcccchhhheeecch----hHhHhhhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEE
Confidence 6531 1111224455566666554443221 11123333444444322111100 0122334456778888999998
Q ss_pred EeccCCccccchHHHHHhhCC---CCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC-CCCCCCccc-Cce
Q 042981 664 EFDEEGEEGRRKNQQLLEALQ---PPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE-HFPPLGKLP-LEK 736 (876)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~lp~l~~Lp-L~~ 736 (876)
..+....... ...+... ..+++..+.+.++.....+.|....++|+.|.+..|...+ .+|....+. ++.
T Consensus 725 ~~~~~~e~~~----~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 725 LDCGISEIVI----EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred EcCCCchhhc----ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 8776531100 0000000 1235556666666666667888788899999999888765 344444444 443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-64 Score=621.86 Aligned_cols=709 Identities=19% Similarity=0.237 Sum_probs=433.7
Q ss_pred HHHHHHHHhHHHHHhcccccceeeccc-------cCccCCCCCccccCccCCceeeccchHHHHHHHhhccCCcCCCCeE
Q 042981 80 VKIREINEKPDDIASQKDRFKFVENVS-------NHVKKPKQARTTSLIDEGEVCGRVDEKNELLSKLLFESSEQQKGLH 152 (876)
Q Consensus 80 ~~i~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~ 152 (876)
.+++++++.+.+++...+.. ...... ....+......++..+.+++||+++.++++..+|.... ++++
T Consensus 134 ~~~~~w~~al~~~~~~~g~~-~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYH-SQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCcee-cCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 56889999999988765421 110000 01111111122233345679999999999998886543 4789
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe---CCc-----------hh-HHHHHHH----HHH---------
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDT-----------FE-EIRVANA----IIE--------- 204 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~----i~~--------- 204 (876)
||+||||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...+++. ++.
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~ 286 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL 286 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH
Confidence 999999999999999999998 78889998888742 111 01 0111221 111
Q ss_pred --------h------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHHHHhhCCcceEeCCCCCcccc-------c
Q 042981 205 --------G------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVARMMGSTNIIFIEQLTEEES-------F 263 (876)
Q Consensus 205 --------~------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~-------~ 263 (876)
. |||||+. +.|+.+.....+.++||+||||||+++++..++..++|+|+.|++++| +
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 1 8999976 478888877777788999999999999999888889999999999999 3
Q ss_pred cCCCcCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCCchhH
Q 042981 264 SGRSFEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPSNSMV 343 (876)
Q Consensus 264 f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~l 343 (876)
|+.. ..++++.+++++|+++|+|+|||++++|+.|+++. .++|+.++++..... +.++.++|++||++|+++ ..
T Consensus 365 f~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~-~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~-~~ 438 (1153)
T PLN03210 365 FKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD-KEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNK-KD 438 (1153)
T ss_pred cCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC-HHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCcc-ch
Confidence 4432 23456889999999999999999999999999874 789999998765432 346999999999999873 48
Q ss_pred HHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHHhhhhhcccccCCCCCCcceEEcChHHHHHHHHhccc
Q 042981 344 KRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGEEYFNISKFKKDDDDDDIMSCKMHDIVHDFAQFVSRK 423 (876)
Q Consensus 344 k~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~mHdlv~dla~~i~~~ 423 (876)
|.||+|||+||.++.+ +.+..|+|++......+ ++..++..+ +.. .++ +++|||++|+||+.++++
T Consensus 439 k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~~~--l~~L~~ksL----i~~--~~~---~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 439 KAIFRHIACLFNGEKV---NDIKLLLANSDLDVNIG--LKNLVDKSL----IHV--RED---IVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred hhhhheehhhcCCCCH---HHHHHHHHhcCCCchhC--hHHHHhcCC----EEE--cCC---eEEhhhHHHHHHHHHHHh
Confidence 9999999999988654 45788888876643322 333333333 111 122 688999999999999877
Q ss_pred ce-------E-EEEeCCccceecccCCCceEEEEeeecCCCCC---cccccCCCcceEEeeecCCCCC-CCCchhhhHHH
Q 042981 424 EC-------L-WVEINGTKESVINSFGDKVRHLGLNFEGGASF---PMSIHGLNRLRTLLIYFQSPSN-PSLNSSILSEL 491 (876)
Q Consensus 424 e~-------~-~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~ 491 (876)
+. + |...+.......+....+++.+++..+....+ ...|.+|++|+.|.++.+.... +.....++..
T Consensus 505 ~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~- 583 (1153)
T PLN03210 505 QSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG- 583 (1153)
T ss_pred hcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-
Confidence 63 2 21111111112234467788888877665543 5678899999999997653111 1111222333
Q ss_pred hccC-CcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccccc
Q 042981 492 FSKL-ACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAG 570 (876)
Q Consensus 492 ~~~l-~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 570 (876)
|..+ ..||.|.+ .++.+..+|..+ .+.+|+.|+|++|.+..+|..+..+++|+.|+|++|..+..+|.
T Consensus 584 ~~~lp~~Lr~L~~---------~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 584 FDYLPPKLRLLRW---------DKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred hhhcCcccEEEEe---------cCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 3333 45888888 555566666655 34666666666666666666666666666666666655666654
Q ss_pred ccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhc
Q 042981 571 IGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERL 650 (876)
Q Consensus 571 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (876)
++.+++|++|++++|..+..+|..++++++|+.|....+..-. .+..-.++++|+.|.++++..+..++.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---- 722 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTGINLKSLYRLNLSGCSRLKSFPD---- 722 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCcCCCCCCCEEeCCCCCCcccccc----
Confidence 6666666666666666666666666666666666332211100 011111355555566655433322211
Q ss_pred cCcccccCCceEEEeccCCccccch--------------HHHHHh--------hCCCCCCccEEEEeecC-CCCCCchhh
Q 042981 651 GLHNMKNLLRLSLEFDEEGEEGRRK--------------NQQLLE--------ALQPPLNVKELGIVSYG-GNIFPKWLT 707 (876)
Q Consensus 651 ~l~~l~~L~~L~L~~~~~~~~~~~~--------------~~~~~~--------~l~~~~~L~~L~l~~~~-~~~lp~~l~ 707 (876)
...+|+.|+++.|.+....... ...... ....+++|+.|.+.++. ...+|.+++
T Consensus 723 ---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 723 ---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred ---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 1234555555544331100000 000000 00113455666665553 234566666
Q ss_pred cccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccc
Q 042981 708 SLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAM 786 (876)
Q Consensus 708 ~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 786 (876)
++++|+.|+|++|...+.+|....++ |+.|++++|..+...+. ..++|+.|+++++
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----------------------~~~nL~~L~Ls~n 856 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----------------------ISTNISDLNLSRT 856 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----------------------cccccCEeECCCC
Confidence 66666666666665555555444555 66666666554322110 1345666665554
Q ss_pred ccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhcccc---------ccCCCCC
Q 042981 787 EELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILE---------DHRTTDI 857 (876)
Q Consensus 787 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~---------~~~~~~l 857 (876)
.++.. |..+..+++|+.|+|++|+.+..+|..+..+++|+.|++++|..+..++... ......+
T Consensus 857 -~i~~i------P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~ 929 (1153)
T PLN03210 857 -GIEEV------PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929 (1153)
T ss_pred -CCccC------hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence 23322 3345566666667776666666666666666666666666666665432211 0112344
Q ss_pred CCcCEEEEccCCCCC
Q 042981 858 PRLSSLEIEYCPKLN 872 (876)
Q Consensus 858 p~L~~L~i~~c~~L~ 872 (876)
|+...+.+.+|.+|.
T Consensus 930 p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 930 PSTVCINFINCFNLD 944 (1153)
T ss_pred CchhccccccccCCC
Confidence 555555666665554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.8e-40 Score=347.95 Aligned_cols=242 Identities=38% Similarity=0.654 Sum_probs=191.8
Q ss_pred ccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh---
Q 042981 129 RVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG--- 205 (876)
Q Consensus 129 r~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--- 205 (876)
||.++++|.+.|.... ++.++|+|+||||+||||||+++|++.+++.+|+.++||.++...+...+++.|+.+
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999999753 378999999999999999999999977799999999999999988877777777755
Q ss_pred ------------------------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHHHHhhCC-cceEeC
Q 042981 206 ------------------------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVARMMGS-TNIIFI 254 (876)
Q Consensus 206 ------------------------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~-~~~~~l 254 (876)
|||||+.. .|+.+...++....||+||||||+..|+..++. ...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 89999874 898888888887789999999999999887764 789999
Q ss_pred CCCCcccc--ccCCCc-----CCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhccccc---cCC
Q 042981 255 EQLTEEES--FSGRSF-----EDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVEE---IGQ 324 (876)
Q Consensus 255 ~~L~~~~~--~f~~~~-----~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~---~~~ 324 (876)
++|+.+|| +|.... ...+.+.+++++|+++|+|+||||+++|++|+.+.+..+|+.+++...+...+ ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999 443221 23456778999999999999999999999997766678899998876555432 246
Q ss_pred cchhhHhhcccCCCCchhHHHHHhHhccCCCCceeChHHHHHHHHHcCccccCC
Q 042981 325 GLFAPLLLSYNDLPSNSMVKRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEE 378 (876)
Q Consensus 325 ~~~~~l~~sy~~L~~~~~lk~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~ 378 (876)
.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+|||||+..+
T Consensus 235 ~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 235 SVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 689999999999999 9999999999999999999999999999999997653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.6e-30 Score=319.77 Aligned_cols=280 Identities=24% Similarity=0.294 Sum_probs=182.8
Q ss_pred CceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccc------------
Q 042981 443 DKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFI------------ 509 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~------------ 509 (876)
.+++.|+++.+.+... +..+..+++|++|++++|. +.+.++..++..+++|++|+|++|++.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence 4677777777765433 5667777788888776554 334455566667777777777766552
Q ss_pred -cCCCCCccc-ccccccccCcccCeeeccCcccc-ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCC
Q 042981 510 -FDPYPNLIR-EIPENVRKLIHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTP 586 (876)
Q Consensus 510 -~~~~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 586 (876)
++.++|.+. .+|..++++.+|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 233555554 57778888888888888888875 778888888888888888887667788888888888888888888
Q ss_pred CCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEec
Q 042981 587 LLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFD 666 (876)
Q Consensus 587 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 666 (876)
+.+.+|..++++++|++|...... +.+.....+.++++|+.|.++++ .+....+..+.++++|+.|++++|
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNN-----LTGPIPSSLGNLKNLQYLFLYQN----KLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCce-----eccccChhHhCCCCCCEEECcCC----eeeccCchhHhhccCcCEEECcCC
Confidence 877888888888888888432211 11112234566777777777663 223333445666777777777776
Q ss_pred cCCccccchHHHHHhhCCCCCCccEEEEeecCCC-CCCchhhcccCCcEEEEecCCCCCCCCC-CCccc-CceEeecCCC
Q 042981 667 EEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGN-IFPKWLTSLTNLRDLRLKSCVICEHFPP-LGKLP-LEKLTLYGLY 743 (876)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~L~L~~~~ 743 (876)
.+.+ .....+..+++|+.|++.+|... .+|.++..+++|+.|+|++|.+.+.+|. ++.++ |+.|++++|.
T Consensus 295 ~l~~-------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 295 SLSG-------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred eecc-------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 5521 11223334556666666665543 3455666666666666666666554443 45555 6666665554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.1e-29 Score=310.34 Aligned_cols=399 Identities=18% Similarity=0.164 Sum_probs=237.2
Q ss_pred CceEEEEeeecCCC-CCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-cc
Q 042981 443 DKVRHLGLNFEGGA-SFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR-EI 520 (876)
Q Consensus 443 ~~lr~L~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~l 520 (876)
.+++.|++++|.+. .+|..+.++++|++|++.+|. +... .+..+.++++|++|+| ++|.+. .+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~-~p~~l~~l~~L~~L~L---------~~n~l~~~~ 228 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-----LVGQ-IPRELGQMKSLKWIYL---------GYNNLSGEI 228 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-----CcCc-CChHHcCcCCccEEEC---------cCCccCCcC
Confidence 45666666666553 335566666666666665543 1222 2233566666666666 333333 45
Q ss_pred ccccccCcccCeeeccCcccc-ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCC
Q 042981 521 PENVRKLIHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLT 599 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 599 (876)
|..++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.+.+.+|..+.+++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 666666666777777666655 5666666666677777766655556666666666677776666666566666666666
Q ss_pred CCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccch----
Q 042981 600 SLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRK---- 675 (876)
Q Consensus 600 ~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---- 675 (876)
+|+.|...... +.+.....+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.+..+..
T Consensus 309 ~L~~L~l~~n~-----~~~~~~~~~~~l~~L~~L~L~~n----~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 309 NLEILHLFSNN-----FTGKIPVALTSLPRLQVLQLWSN----KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred CCcEEECCCCc-----cCCcCChhHhcCCCCCEEECcCC----CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 66666322111 00111223445566666666553 222223334555556666666655442111100
Q ss_pred -------------HHHHHhhCCCCCCccEEEEeecCCC-CCCchhhcccCCcEEEEecCCCCCCCCC-CCccc-CceEee
Q 042981 676 -------------NQQLLEALQPPLNVKELGIVSYGGN-IFPKWLTSLTNLRDLRLKSCVICEHFPP-LGKLP-LEKLTL 739 (876)
Q Consensus 676 -------------~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~L~L 739 (876)
.......+..+++|+.|++.+|... .+|..+..+++|+.|+|++|.+.+.+|. +..+| |+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 0011122334456666666665543 3466666666777777777766654443 44566 777777
Q ss_pred cCCCCceEeCcccccCCCCCCCCCCCCCC----CcccccCcccceeeccccccccccccccccccccCcccccceeeecc
Q 042981 740 YGLYGVKRVGNEFLGIEGSSEDDPSSSSS----SSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWY 815 (876)
Q Consensus 740 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 815 (876)
++|......+..+ +...+..++++.+.+ +..+..+++|+.|+++++. +.+..|..+..+++|+.|+|++
T Consensus 460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK------LSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred cCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc------ceeeCChHHcCccCCCEEECCC
Confidence 7766544433322 233455555554332 3445567788888776652 2223356677889999999999
Q ss_pred CccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCCC
Q 042981 816 CPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLPD 876 (876)
Q Consensus 816 c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP~ 876 (876)
|.....+|..+..+++|+.|++++|+....+|. .+..+++|+.|++++|+-...+|+
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK----NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCCh----hHhcCcccCEEeccCCcceeeCCC
Confidence 977778888888899999999999987766654 456788999999999987767774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=6.5e-28 Score=253.30 Aligned_cols=337 Identities=21% Similarity=0.229 Sum_probs=220.8
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc--cc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR--EI 520 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~--~l 520 (876)
..++.|.+....+..+|+.++.+.+|..|.+.+|. ...+... ++.++.||.+++ ..|.+. .+
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~------L~~vhGE-Ls~Lp~LRsv~~---------R~N~LKnsGi 95 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ------LISVHGE-LSDLPRLRSVIV---------RDNNLKNSGI 95 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh------hHhhhhh-hccchhhHHHhh---------hccccccCCC
Confidence 35677788777777788888888888888886665 2222222 677888888888 555554 48
Q ss_pred ccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc-cCcCCCceEecCCCCCCccCCccCCCCC
Q 042981 521 PENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI-GKLKKMRSLLNGGTPLLKYMPIGISKLT 599 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 599 (876)
|+.|-.|..|..||||+|++++.|..+.+.+++-+|+|++| .+..+|..+ .+|+.|-.|+|++|++ ..+|+.+..|.
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLS 173 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHh
Confidence 99999999999999999999999999999999999999998 677888764 5899999999999955 78898999999
Q ss_pred CCCccCceeecCccCCCcccc-----ccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccc
Q 042981 600 SLRTLEKFAMGGGVDDISTCR-----LESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRR 674 (876)
Q Consensus 600 ~L~~L~~~~~~~~~~~ls~~~-----l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 674 (876)
.|++| ++++|. +..|+.++.|..|.+++- ......++.++..+.+|..++++.|.+.
T Consensus 174 ~LqtL----------~Ls~NPL~hfQLrQLPsmtsL~vLhms~T---qRTl~N~Ptsld~l~NL~dvDlS~N~Lp----- 235 (1255)
T KOG0444|consen 174 MLQTL----------KLSNNPLNHFQLRQLPSMTSLSVLHMSNT---QRTLDNIPTSLDDLHNLRDVDLSENNLP----- 235 (1255)
T ss_pred hhhhh----------hcCCChhhHHHHhcCccchhhhhhhcccc---cchhhcCCCchhhhhhhhhccccccCCC-----
Confidence 99999 444444 445666666666776653 2233445566778888888888888652
Q ss_pred hHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccc
Q 042981 675 KNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFL 753 (876)
Q Consensus 675 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~ 753 (876)
.+.+.+-..++|++|++++|.++.+.-..+.-.+|+.|+|+.|++......+-.|| |+.|.+.+|.. .
T Consensus 236 ---~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL-~------- 304 (1255)
T KOG0444|consen 236 ---IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL-T------- 304 (1255)
T ss_pred ---cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc-c-------
Confidence 23334444455666666666555554444444556666666665533222344555 55555544331 1
Q ss_pred cCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCcc
Q 042981 754 GIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQ 833 (876)
Q Consensus 754 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 833 (876)
..++|+.++.+.+|+.++..++ .|+-. |+.++.++.|+.|.++.| .+-.+|.++.-++.|+
T Consensus 305 -----------FeGiPSGIGKL~~Levf~aanN-~LElV------PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 305 -----------FEGIPSGIGKLIQLEVFHAANN-KLELV------PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLK 365 (1255)
T ss_pred -----------ccCCccchhhhhhhHHHHhhcc-ccccC------chhhhhhHHHHHhccccc-ceeechhhhhhcCCcc
Confidence 1123444555555555554443 23222 445555666666666555 4445666665566666
Q ss_pred EEEEecCCCchh
Q 042981 834 KLSISYCPIMEE 845 (876)
Q Consensus 834 ~L~l~~~~~l~~ 845 (876)
.|++.+|+++.-
T Consensus 366 vLDlreNpnLVM 377 (1255)
T KOG0444|consen 366 VLDLRENPNLVM 377 (1255)
T ss_pred eeeccCCcCccC
Confidence 666666665543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-25 Score=231.93 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCC-CCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCC
Q 042981 687 LNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICE-HFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDP 763 (876)
Q Consensus 687 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~ 763 (876)
.+++.|++..|....+ -.|+..|+.|+.|+|++|.+.. .+....--+ |+.|+|+.|...+..+..|.....+..+.+
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 3444444444333332 2244444444444444444433 122222223 444444444443333334444333444444
Q ss_pred CCCCCC----cccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCC-CCCCCCCccEEEEe
Q 042981 764 SSSSSS----SSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPD-YLFQSTTLQKLSIS 838 (876)
Q Consensus 764 ~~~~~~----~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 838 (876)
+.+++. ..+.++.+|++|+|+.+ .+ .|.+.. ....+..||+|++|.+.+| +++.+|. .|..+++|+.|+|.
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N-~l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSN-EL-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCC-eE-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCC
Confidence 433332 13456788888877665 22 233322 1234567899999999888 6777774 57778899999999
Q ss_pred cCCCchhhccccccCCCCCCCcCEEEE
Q 042981 839 YCPIMEELRILEDHRTTDIPRLSSLEI 865 (876)
Q Consensus 839 ~~~~l~~l~~~~~~~~~~lp~L~~L~i 865 (876)
+|.+. .+..+.+..+ .|+.|.+
T Consensus 425 ~Naia----SIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 425 DNAIA----SIQPNAFEPM-ELKELVM 446 (873)
T ss_pred CCcce----eecccccccc-hhhhhhh
Confidence 88643 2333344444 5666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.7e-26 Score=240.24 Aligned_cols=336 Identities=24% Similarity=0.268 Sum_probs=257.8
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
-.++.||++..|.+..+...+..++.||++.+..|.. -...+|++ +-.+.-|.+||| +.|.+.+.|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L----KnsGiP~d-iF~l~dLt~lDL---------ShNqL~EvP 119 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL----KNSGIPTD-IFRLKDLTILDL---------SHNQLREVP 119 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc----ccCCCCch-hcccccceeeec---------chhhhhhcc
Confidence 4578999999999988888899999999999977652 12345666 457999999999 888899999
Q ss_pred cccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTS 600 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 600 (876)
..+..-+++-+|+||+|+|.++|.+ +-+|..|-.|||++| .+..+|..+..|.+|+.|.|++|++...--..+..|++
T Consensus 120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 9999999999999999999999976 568999999999998 78999999999999999999999764332233445666
Q ss_pred CCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHH
Q 042981 601 LRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLL 680 (876)
Q Consensus 601 L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 680 (876)
|++|......... .|....+..|.+|+.++++. +++ ...+..+-++.+|+.|+|+.|.+.....
T Consensus 199 L~vLhms~TqRTl----~N~Ptsld~l~NL~dvDlS~----N~L-p~vPecly~l~~LrrLNLS~N~iteL~~------- 262 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTL----DNIPTSLDDLHNLRDVDLSE----NNL-PIVPECLYKLRNLRRLNLSGNKITELNM------- 262 (1255)
T ss_pred hhhhhcccccchh----hcCCCchhhhhhhhhccccc----cCC-CcchHHHhhhhhhheeccCcCceeeeec-------
Confidence 6666544333322 45566788889999999887 232 3345567889999999999998742111
Q ss_pred hhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC-CCCC-CCccc-CceEeecCCCCceEeCcccccCCC
Q 042981 681 EALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE-HFPP-LGKLP-LEKLTLYGLYGVKRVGNEFLGIEG 757 (876)
Q Consensus 681 ~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~lp~-l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~ 757 (876)
....-.+|+.|+++.|..+.+|..++.+++|++|.+.+|++.- .+|+ +|.|. |+.+...+|. ++.++.
T Consensus 263 -~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE------- 333 (1255)
T KOG0444|consen 263 -TEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE------- 333 (1255)
T ss_pred -cHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch-------
Confidence 1112357999999999999999999999999999999998753 5554 88888 9988887654 555443
Q ss_pred CCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEE
Q 042981 758 SSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSI 837 (876)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 837 (876)
.+..|+.|+.|.|+++ .|-. .|+.+.-+|.|+.|++..|+++..-|.--..-++|+.-+|
T Consensus 334 -------------glcRC~kL~kL~L~~N-rLiT------LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 334 -------------GLCRCVKLQKLKLDHN-RLIT------LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred -------------hhhhhHHHHHhccccc-ceee------chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 3456999999987765 3322 2778888999999999999998865543222244554333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-24 Score=226.52 Aligned_cols=362 Identities=17% Similarity=0.136 Sum_probs=255.5
Q ss_pred CCceEEEEeeecCCCCC-cccccC--CCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHG--LNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR 518 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~ 518 (876)
+...+-++.+.+.+..+ ...+.+ .+.-++|++++|. ...+....|.++++|+.+.+ ..|.+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk------l~~id~~~f~nl~nLq~v~l---------~~N~Lt 115 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK------LSHIDFEFFYNLPNLQEVNL---------NKNELT 115 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccc------cccCcHHHHhcCCcceeeee---------ccchhh
Confidence 33455566666655443 111111 2456789997776 34455566899999999999 888899
Q ss_pred ccccccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCCccCCccCC
Q 042981 519 EIPENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 519 ~lp~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
.+|.......||+.|+|.+|.|+++. +++..++.|++|||+.| .+.++|. .+..-.++++|+|++|.+...-...|.
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccccc
Confidence 99988888889999999999999776 46888999999999999 5666654 456668899999999988655555677
Q ss_pred CCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchH
Q 042981 597 KLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKN 676 (876)
Q Consensus 597 ~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 676 (876)
.+.+|-+| .++.|.+..|+ ...|..+++|+.|+|..|.+.
T Consensus 195 ~lnsL~tl----------kLsrNrittLp-----------------------~r~Fk~L~~L~~LdLnrN~ir------- 234 (873)
T KOG4194|consen 195 SLNSLLTL----------KLSRNRITTLP-----------------------QRSFKRLPKLESLDLNRNRIR------- 234 (873)
T ss_pred ccchheee----------ecccCcccccC-----------------------HHHhhhcchhhhhhcccccee-------
Confidence 77777776 33333333221 123445556666666666542
Q ss_pred HHHHhhCCCCCCccEEEEeecCCCCCCch-hhcccCCcEEEEecCCCCC-CCCCCCccc-CceEeecCCCCceEeCcccc
Q 042981 677 QQLLEALQPPLNVKELGIVSYGGNIFPKW-LTSLTNLRDLRLKSCVICE-HFPPLGKLP-LEKLTLYGLYGVKRVGNEFL 753 (876)
Q Consensus 677 ~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~-~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~ 753 (876)
....-.+..+++|+.|.+..|....+-+. +..+.+++.|+|+.|++.. .-.++-.|. |+.|+|+.|..-.+..+...
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 11122345556666666766666666544 4489999999999999865 233456778 99999999988777777777
Q ss_pred cCCCCCCCCCCCCCCC----cccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCC---CCCC
Q 042981 754 GIEGSSEDDPSSSSSS----SSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVL---PDYL 826 (876)
Q Consensus 754 ~~~~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l---p~~l 826 (876)
....+..++++++.+. .++..+..|++|.|+++ .+.. .....+..+.+|++|+|++|...-.+ ...|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~-----l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDH-----LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHH-----HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 7788888888876653 45667788888866654 2332 22346678999999999999654333 2346
Q ss_pred CCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCC
Q 042981 827 FQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 827 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
..+++|++|.+.||+ +..+....+..++.|++|++.+++
T Consensus 389 ~gl~~LrkL~l~gNq----lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ----LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccchhhhheeecCce----eeecchhhhccCcccceecCCCCc
Confidence 679999999999995 333445678999999999999885
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.2e-22 Score=246.41 Aligned_cols=349 Identities=20% Similarity=0.205 Sum_probs=220.1
Q ss_pred CCceEEEEeeecCCC-------CCcccccCCC-cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCC
Q 042981 442 GDKVRHLGLNFEGGA-------SFPMSIHGLN-RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPY 513 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~-------~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 513 (876)
..+++.|.+..+... .+|..+..++ +||.|.+.++. ...++.. | .+.+|+.|++ .
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~------l~~lP~~-f-~~~~L~~L~L---------~ 619 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP------LRCMPSN-F-RPENLVKLQM---------Q 619 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC------CCCCCCc-C-CccCCcEEEC---------c
Confidence 345666666544211 2355555543 58888876553 2222322 2 4577888888 6
Q ss_pred CCcccccccccccCcccCeeeccCcc-ccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCC
Q 042981 514 PNLIREIPENVRKLIHLKYLNLSELC-IERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMP 592 (876)
Q Consensus 514 ~~~i~~lp~~i~~L~~Lr~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 592 (876)
++.+..+|..+..+++|++|+|+++. +..+|. ++.+++|++|+|++|..+..+|..+.++++|++|++++|..+..+|
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 67777788778888888888888764 566764 7778888888888887778888888888888888888887777777
Q ss_pred ccCCCCCCCCccCceeecCcc-----------CCCccccccccc---cCCCCCCeeeeCcCCCC---CcchhhhccCccc
Q 042981 593 IGISKLTSLRTLEKFAMGGGV-----------DDISTCRLESLK---NLQLLRECGIEGLSNVS---HLDEDERLGLHNM 655 (876)
Q Consensus 593 ~~i~~l~~L~~L~~~~~~~~~-----------~~ls~~~l~~L~---~L~~L~~L~l~~~~~~~---~~~~~~~~~l~~l 655 (876)
..+ ++++|+.|....+.... .+++.+.+..++ .+++|+.|.+.++.... ......+......
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 765 66777766433221100 011122222222 23344444443321100 0000000111234
Q ss_pred ccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecC-CCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-
Q 042981 656 KNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYG-GNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP- 733 (876)
Q Consensus 656 ~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp- 733 (876)
++|+.|+++.|... ..+...+..+++|+.|++.+|. ...+|..+ .+++|+.|+|++|.....+|.+ .+
T Consensus 778 ~sL~~L~Ls~n~~l-------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STN 847 (1153)
T ss_pred ccchheeCCCCCCc-------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccc
Confidence 67888888877432 1233445677899999999864 56677766 7899999999999877766643 35
Q ss_pred CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeee
Q 042981 734 LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTI 813 (876)
Q Consensus 734 L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 813 (876)
|+.|+|+++... . +|..+..+++|+.|++.+|.+|..... ....+++|+.|++
T Consensus 848 L~~L~Ls~n~i~-~--------------------iP~si~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l 900 (1153)
T PLN03210 848 ISDLNLSRTGIE-E--------------------VPWWIEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDF 900 (1153)
T ss_pred cCEeECCCCCCc-c--------------------ChHHHhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeec
Confidence 899999876432 1 223355799999999999999987643 5668999999999
Q ss_pred ccCccCCCCCCC-------------CCCCCCccEEEEecCCCchhh
Q 042981 814 WYCPRLRVLPDY-------------LFQSTTLQKLSISYCPIMEEL 846 (876)
Q Consensus 814 ~~c~~l~~lp~~-------------l~~l~~L~~L~l~~~~~l~~l 846 (876)
++|+.+..++.. ...+++...+.+.+|..+...
T Consensus 901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 999988755421 012333455566777665443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2e-24 Score=216.68 Aligned_cols=240 Identities=21% Similarity=0.301 Sum_probs=171.4
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
-..+..+.++.|....+|+++..+..+..|+++.+. ...+++. ...+..|+.|+. +.|.+..+|
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~lp~~-i~s~~~l~~l~~---------s~n~~~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSELPEQ-IGSLISLVKLDC---------SSNELKELP 130 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------HhhccHH-Hhhhhhhhhhhc---------cccceeecC
Confidence 345677788888888888888888888888887765 2333443 677888888998 777778889
Q ss_pred cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSL 601 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 601 (876)
++|+.+..|..|+..+|+++++|.+++++.+|..|++.+| .+..+|...-++++|+||+...| .++.+|+.++.|.+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESL 208 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhh
Confidence 9999999999999999999999999999999999999988 56777776666999999998888 568899999999888
Q ss_pred CccCceeecCccCCCcccccc---ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 602 RTLEKFAMGGGVDDISTCRLE---SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 602 ~~L~~~~~~~~~~~ls~~~l~---~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
..|+ +..+.+. +++.+..|..|++.. +.+.....+.+.++.+|..|++..|++. +
T Consensus 209 ~~Ly----------L~~Nki~~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNklk--------e 266 (565)
T KOG0472|consen 209 ELLY----------LRRNKIRFLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNKLK--------E 266 (565)
T ss_pred HHHH----------hhhcccccCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeeccccccc--------c
Confidence 8873 2233333 444445555555543 2222222233446667777777777653 2
Q ss_pred HHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCC
Q 042981 679 LLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVI 722 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 722 (876)
+.+.++...+|++|+++++..+.+|..++++ .|+.|-+.+|++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 3333444556667777777766667767666 666676666654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-22 Score=222.43 Aligned_cols=276 Identities=25% Similarity=0.253 Sum_probs=171.8
Q ss_pred EEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccC
Q 042981 448 LGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKL 527 (876)
Q Consensus 448 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L 527 (876)
++++......+|..+..-..+..|.+..|. ....|-++..+.-+|+.||+ ++|.+..+|..|+.+
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~------~l~~pl~~~~~~v~L~~l~l---------snn~~~~fp~~it~l 67 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNS------LLSRPLEFVEKRVKLKSLDL---------SNNQISSFPIQITLL 67 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccc------cccCchHHhhheeeeEEeec---------cccccccCCchhhhH
Confidence 344444555556655555557777765543 12223344455555999999 777888888888889
Q ss_pred cccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCce
Q 042981 528 IHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKF 607 (876)
Q Consensus 528 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 607 (876)
.+|+.|+++.|.|.++|.+++++.+|++|+|.+| .+..+|.++..+++|+.|++++|.+ +.+|.-+..++.+..+...
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhh
Confidence 9999999999999999988899999999999877 7888999999999999999998876 6677666666555554221
Q ss_pred eecCc--------------cCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcccc
Q 042981 608 AMGGG--------------VDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGR 673 (876)
Q Consensus 608 ~~~~~--------------~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 673 (876)
..... ...+....+.++..++. .|++... ... ...+.++.+|+.|....|.+.....
T Consensus 146 ~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N----~~~---~~dls~~~~l~~l~c~rn~ls~l~~ 216 (1081)
T KOG0618|consen 146 NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN----EME---VLDLSNLANLEVLHCERNQLSELEI 216 (1081)
T ss_pred cchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc----hhh---hhhhhhccchhhhhhhhcccceEEe
Confidence 11000 00000111111222222 1333331 111 1234455555555554444321000
Q ss_pred -----------chHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC------------------
Q 042981 674 -----------RKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE------------------ 724 (876)
Q Consensus 674 -----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~------------------ 724 (876)
............+.+|++++++.+....+|+|++.+.+|+.|...+|.++.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 000012223344679999999999999999999999999999999887631
Q ss_pred ----CCCC-CCccc-CceEeecCCCCceEeC
Q 042981 725 ----HFPP-LGKLP-LEKLTLYGLYGVKRVG 749 (876)
Q Consensus 725 ----~lp~-l~~Lp-L~~L~L~~~~~l~~~~ 749 (876)
.+|+ ++.+. |+.|+|..|.......
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccch
Confidence 2333 34477 8899998877554443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=2.3e-21 Score=194.88 Aligned_cols=334 Identities=21% Similarity=0.233 Sum_probs=160.7
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccccccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRK 526 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~ 526 (876)
.+.+.+|.+..+|+..-+|+.|+.|++..|. ...+|++ ++.+.+|..|+| ..|.+..+| .|++
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~------L~tlP~~-lg~l~~L~~LyL---------~~Nki~~lP-ef~g 226 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNL------LETLPPE-LGGLESLELLYL---------RRNKIRFLP-EFPG 226 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchhh------hhcCChh-hcchhhhHHHHh---------hhcccccCC-CCCc
Confidence 3444444444444444445555555554332 2333443 455555555555 555555555 4555
Q ss_pred CcccCeeeccCccccccchhhc-cCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccC
Q 042981 527 LIHLKYLNLSELCIERLPKTLC-ELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLE 605 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 605 (876)
+..|+.|+++.|.|+.+|..++ .|.+|.+|||+.| .++++|.+++.|++|.+||+++|.+ ..+|..+|++ .|+.|
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L- 302 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFL- 302 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeeh-
Confidence 5666666666666666665554 5666666666665 4566666666666666666666643 4455555555 55544
Q ss_pred ceeecCccCCCcccccccccc----------CCCCCC----eeeeCcCCCC----CcchhhhccCcccccCCceEEEecc
Q 042981 606 KFAMGGGVDDISTCRLESLKN----------LQLLRE----CGIEGLSNVS----HLDEDERLGLHNMKNLLRLSLEFDE 667 (876)
Q Consensus 606 ~~~~~~~~~~ls~~~l~~L~~----------L~~L~~----L~l~~~~~~~----~~~~~~~~~l~~l~~L~~L~L~~~~ 667 (876)
.+.++.+..+.. |+.|+. =.++.-+.-. ..+.........+.+.+.|+++.-+
T Consensus 303 ---------~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 303 ---------ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ---------hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 122222221100 001111 0000000000 0000011111223344444444433
Q ss_pred CCccccchHHHHHhhCCCCCCccEEEEe------------------------ecCCCCCCchhhcccCCcEEEEecCCCC
Q 042981 668 EGEEGRRKNQQLLEALQPPLNVKELGIV------------------------SYGGNIFPKWLTSLTNLRDLRLKSCVIC 723 (876)
Q Consensus 668 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~------------------------~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 723 (876)
+.... .++++.-. ..-....+++ ++...-+|..++.+++|+.|+|++|.+.
T Consensus 374 lt~VP----dEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 374 LTLVP----DEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred cccCC----HHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence 32111 11111110 0012233333 3333333445556666666666666554
Q ss_pred CCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccccccccccccccccccc
Q 042981 724 EHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENI 802 (876)
Q Consensus 724 ~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 802 (876)
.-...++.+- |+.|+++.|.. ...+.. .-....|+.+-.+++ .+.. ..+..+
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~--------------------~y~lq~lEtllas~n-qi~~-----vd~~~l 501 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRF-RMLPEC--------------------LYELQTLETLLASNN-QIGS-----VDPSGL 501 (565)
T ss_pred hcchhhhhhhhhheeccccccc-ccchHH--------------------HhhHHHHHHHHhccc-cccc-----cChHHh
Confidence 3333355555 66666665421 111110 111223333322222 2322 223457
Q ss_pred CcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCc
Q 042981 803 SIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIM 843 (876)
Q Consensus 803 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 843 (876)
.+|.+|..|++.+| .+..+|..++++++|++|++.||+.-
T Consensus 502 ~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence 78999999999888 67789999999999999999999864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.8e-20 Score=205.99 Aligned_cols=378 Identities=21% Similarity=0.201 Sum_probs=200.7
Q ss_pred ceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc
Q 042981 444 KVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN 523 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~ 523 (876)
++.+|++++|.+..+|..+..+.+|+.|.+..|. +...+ ....++++|++|.| .+|.+..+|.+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~------i~~vp-~s~~~~~~l~~lnL---------~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY------IRSVP-SSCSNMRNLQYLNL---------KNNRLQSLPAS 109 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh------HhhCc-hhhhhhhcchhhee---------ccchhhcCchh
Confidence 3778888888888888888888888888887665 33333 33677888888888 77777888888
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCc
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRT 603 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 603 (876)
+..+.+|+||++++|.+..+|.-+..+..++.++.++|..+..++.. . .+++++..|.+.+.++.+++.++. +
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~i~~l~~--~ 182 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLIDIYNLTH--Q 182 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcchhhhhe--e
Confidence 88888888888888888888888888888888888777433333332 1 556666666555666666655555 2
Q ss_pred cCceeecCccCCCc-----------cccccccc-cCC----------------------CCCCeeeeCcCCCCCcchhhh
Q 042981 604 LEKFAMGGGVDDIS-----------TCRLESLK-NLQ----------------------LLRECGIEGLSNVSHLDEDER 649 (876)
Q Consensus 604 L~~~~~~~~~~~ls-----------~~~l~~L~-~L~----------------------~L~~L~l~~~~~~~~~~~~~~ 649 (876)
|+.....-...+++ .+.+..+. ..+ +|+.++++. +.+ ...+
T Consensus 183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~----n~l-~~lp 257 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH----NNL-SNLP 257 (1081)
T ss_pred eecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch----hhh-hcch
Confidence 21111100000000 00111000 001 122222222 011 1122
Q ss_pred ccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCC-
Q 042981 650 LGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPP- 728 (876)
Q Consensus 650 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~- 728 (876)
.++..+.+|+.+....|.+. .++..+.+..+|+.|.+..|....+|.....++.|+.|+|..|++. .+|.
T Consensus 258 ~wi~~~~nle~l~~n~N~l~--------~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV--------ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred HHHHhcccceEecccchhHH--------hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchH
Confidence 34445555555555555442 1222222333444444444444445555555666666666666542 1221
Q ss_pred ------------------------CCc--cc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCC---C-cccccCcc
Q 042981 729 ------------------------LGK--LP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSS---S-SSVIAFPK 777 (876)
Q Consensus 729 ------------------------l~~--Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~ 777 (876)
.+. .+ |+.|++.+|...+.....+.+...+.+++++.+.+ | +.+..++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 111 22 44444444433333322333333333333333211 1 12334555
Q ss_pred cceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCC
Q 042981 778 LKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDI 857 (876)
Q Consensus 778 L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l 857 (876)
|++|+++++ .|..+ +.....++.|++|...+| .+..+| .+..++.|+.+|++.|..- .+.... ... -
T Consensus 409 LeeL~LSGN-kL~~L------p~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~-~~~l~~--~~p-~ 475 (1081)
T KOG0618|consen 409 LEELNLSGN-KLTTL------PDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLS-EVTLPE--ALP-S 475 (1081)
T ss_pred hHHHhcccc-hhhhh------hHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhh-hhhhhh--hCC-C
Confidence 555555554 34433 234445666666666555 455566 5667788888888766432 221110 011 1
Q ss_pred CCcCEEEEccCCCC
Q 042981 858 PRLSSLEIEYCPKL 871 (876)
Q Consensus 858 p~L~~L~i~~c~~L 871 (876)
|.|++|+++|++++
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 68999999988754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.1e-14 Score=167.80 Aligned_cols=258 Identities=19% Similarity=0.198 Sum_probs=174.6
Q ss_pred CcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcC
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLK 575 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 575 (876)
..-.+|+| +.+.+..+|+.+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .+
T Consensus 201 ~~~~~LdL---------s~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~ 262 (788)
T PRK15387 201 NGNAVLNV---------GESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PP 262 (788)
T ss_pred CCCcEEEc---------CCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---cc
Confidence 34567888 6777778888775 3788899999988888863 578899999888 56677753 46
Q ss_pred CCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccccccccc-CCCCCCeeeeCcCCCCCcchhhhccCcc
Q 042981 576 KMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKN-LQLLRECGIEGLSNVSHLDEDERLGLHN 654 (876)
Q Consensus 576 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~-L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 654 (876)
+|++|++++|.+ ..+|... ++|+.| ++++|.+..++. +++|+.|+++++. +..++ . .
T Consensus 263 sL~~L~Ls~N~L-~~Lp~lp---~~L~~L----------~Ls~N~Lt~LP~~p~~L~~LdLS~N~-L~~Lp----~---l 320 (788)
T PRK15387 263 GLLELSIFSNPL-THLPALP---SGLCKL----------WIFGNQLTSLPVLPPGLQELSVSDNQ-LASLP----A---L 320 (788)
T ss_pred ccceeeccCCch-hhhhhch---hhcCEE----------ECcCCccccccccccccceeECCCCc-cccCC----C---C
Confidence 788888888865 4555432 445555 334555555543 3567778777631 12211 1 1
Q ss_pred cccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-
Q 042981 655 MKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP- 733 (876)
Q Consensus 655 l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp- 733 (876)
..+|+.|++++|.+.... . .+.+|+.|++++|....+|.. .++|+.|++++|.+.. +|.+ .+
T Consensus 321 p~~L~~L~Ls~N~L~~LP---------~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~ 383 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLP---------T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL--PSG 383 (788)
T ss_pred cccccccccccCcccccc---------c--cccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc--ccc
Confidence 135777888887663110 1 235788999998888887763 3578888898888753 5542 24
Q ss_pred CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeee
Q 042981 734 LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTI 813 (876)
Q Consensus 734 L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 813 (876)
|+.|++++|... .++ ...++|+.|+++++ .+..+ |. .+.+|+.|++
T Consensus 384 L~~LdLs~N~Lt-~LP-----------------------~l~s~L~~LdLS~N-~LssI------P~---l~~~L~~L~L 429 (788)
T PRK15387 384 LKELIVSGNRLT-SLP-----------------------VLPSELKELMVSGN-RLTSL------PM---LPSGLLSLSV 429 (788)
T ss_pred cceEEecCCccc-CCC-----------------------CcccCCCEEEccCC-cCCCC------Cc---chhhhhhhhh
Confidence 888888876522 111 12467999988887 35433 21 2457899999
Q ss_pred ccCccCCCCCCCCCCCCCccEEEEecCCCchh
Q 042981 814 WYCPRLRVLPDYLFQSTTLQKLSISYCPIMEE 845 (876)
Q Consensus 814 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~ 845 (876)
++| .++.+|..+.++++|+.|+|++|+.-..
T Consensus 430 s~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 430 YRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 998 5778999999999999999999986544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.6e-14 Score=166.47 Aligned_cols=262 Identities=19% Similarity=0.138 Sum_probs=162.7
Q ss_pred eEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccccc
Q 042981 445 VRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENV 524 (876)
Q Consensus 445 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i 524 (876)
-..|+++.+.++.+|..+. ++|+.|.+.+|. ...++ ..+++|++|+| ++|.+..+|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~------Lt~LP----~lp~~Lk~LdL---------s~N~LtsLP~l- 260 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN------LTSLP----ALPPELRTLEV---------SGNQLTSLPVL- 260 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc------CCCCC----CCCCCCcEEEe---------cCCccCcccCc-
Confidence 3456677777777666654 467777776654 12222 12467788888 66666666643
Q ss_pred ccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 525 RKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
.++|+.|+|++|.++.+|... .+|+.|++++| .+..+|.. +++|++|++++|.+ ..+|... .+|+.|
T Consensus 261 --p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L 327 (788)
T PRK15387 261 --PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKL 327 (788)
T ss_pred --ccccceeeccCCchhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCcc-ccCCCCc---cccccc
Confidence 356778888888877777633 46777788877 56666652 46788888887755 3445322 233333
Q ss_pred CceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCC
Q 042981 605 EKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQ 684 (876)
Q Consensus 605 ~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~ 684 (876)
.++.|.+..++.++ .+|+.|+|++|.+.... .
T Consensus 328 ----------~Ls~N~L~~LP~lp---------------------------~~Lq~LdLS~N~Ls~LP-----------~ 359 (788)
T PRK15387 328 ----------WAYNNQLTSLPTLP---------------------------SGLQELSVSDNQLASLP-----------T 359 (788)
T ss_pred ----------ccccCccccccccc---------------------------cccceEecCCCccCCCC-----------C
Confidence 12233332222111 35677777777653110 0
Q ss_pred CCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCC
Q 042981 685 PPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDP 763 (876)
Q Consensus 685 ~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~ 763 (876)
.+.+|+.|.+.+|....+|.. ..+|+.|+|++|.+.+ +|.. .+ |+.|++++|... .++.
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Ls-sIP~------------- 419 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLT-SLPM------------- 419 (788)
T ss_pred CCcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCcCC-CCCc-------------
Confidence 134677788888777777764 3579999999998764 5532 34 999999987632 1111
Q ss_pred CCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCC
Q 042981 764 SSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYL 826 (876)
Q Consensus 764 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l 826 (876)
.+.+|+.|+++++ .+..+ |..+..+++|+.|+|++|+.....|..+
T Consensus 420 ----------l~~~L~~L~Ls~N-qLt~L------P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 420 ----------LPSGLLSLSVYRN-QLTRL------PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ----------chhhhhhhhhccC-ccccc------ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2346888887775 34432 5567789999999999997766555443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=7.8e-16 Score=155.40 Aligned_cols=377 Identities=20% Similarity=0.181 Sum_probs=227.8
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.|.....|.|..|.++.+ +.+|..+++||.|++++|. +..+-++.|..++.|..|-+- .+|.|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvly--------g~NkI~~ 130 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLY--------GNNKITD 130 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhh--------cCCchhh
Confidence 477888999999999988 6789999999999998776 567778889999998888771 3488899
Q ss_pred ccc-ccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCC--------
Q 042981 520 IPE-NVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLL-------- 588 (876)
Q Consensus 520 lp~-~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~-------- 588 (876)
+|. .|++|..|+.|.+.-|.+..++ ..+..|++|..|.+..| ....++. .+..+..++++.+..|.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchh
Confidence 994 4789999999999999988665 46888999999999888 5666666 6888899999988777531
Q ss_pred ----ccCCccCCCCCCCCccCceee------------c---------CccCCCccccccccccCCCCCCeeeeCcCCCCC
Q 042981 589 ----KYMPIGISKLTSLRTLEKFAM------------G---------GGVDDISTCRLESLKNLQLLRECGIEGLSNVSH 643 (876)
Q Consensus 589 ----~~~p~~i~~l~~L~~L~~~~~------------~---------~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~ 643 (876)
...|..++......-...+.. . ....-...+....++.|++|++|++++ +.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn----N~ 285 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN----NK 285 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC----Cc
Confidence 112222222221111100000 0 000001122223466778888888877 45
Q ss_pred cchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCC
Q 042981 644 LDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVI 722 (876)
Q Consensus 644 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~ 722 (876)
+......+|.+...++.|.|..|++. ...-..+....+|+.|++.+|.++.+ |..+..+..|..|+|-.|.+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~-------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLE-------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHH-------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 55556667777888888888877652 11223455667788888888877665 55666778888888877664
Q ss_pred CC--CCCCCC--------------ccc--CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecc
Q 042981 723 CE--HFPPLG--------------KLP--LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIG 784 (876)
Q Consensus 723 ~~--~lp~l~--------------~Lp--L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 784 (876)
.= .+.+++ +-| ++.+.++....-+..-. +.+. . +....+.....++.+.+..=.
T Consensus 359 ~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~---~~ee---~--~~~~s~~cP~~c~c~~tVvRc 430 (498)
T KOG4237|consen 359 NCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG---GPEE---L--GCLTSSPCPPPCTCLDTVVRC 430 (498)
T ss_pred cCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC---Cccc---c--CCCCCCCCCCCcchhhhhHhh
Confidence 21 111111 112 33333333221111000 0000 0 000001111123333333211
Q ss_pred ccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEE
Q 042981 785 AMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLE 864 (876)
Q Consensus 785 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~ 864 (876)
....++.+ |.. --..-.+|++.+| ..+.+|.. .+.+| .+++++|+. ..+.+..+.++.+|.+|-
T Consensus 431 Snk~lk~l------p~~--iP~d~telyl~gn-~~~~vp~~--~~~~l-~~dls~n~i----~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 431 SNKLLKLL------PRG--IPVDVTELYLDGN-AITSVPDE--LLRSL-LLDLSNNRI----SSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred cccchhhc------CCC--CCchhHHHhcccc-hhcccCHH--HHhhh-hcccccCce----ehhhcccccchhhhheeE
Confidence 11122211 111 1223456777777 55667765 56778 889999863 344556788888888888
Q ss_pred Ecc
Q 042981 865 IEY 867 (876)
Q Consensus 865 i~~ 867 (876)
|+.
T Consensus 495 lsy 497 (498)
T KOG4237|consen 495 LSY 497 (498)
T ss_pred Eec
Confidence 865
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=9e-14 Score=161.52 Aligned_cols=132 Identities=22% Similarity=0.325 Sum_probs=89.5
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
.+...+.+..++++.+|..+. ++|+.|++.+|. ...++..++ .+|++|++ ++|.+..+|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~------LtsLP~~l~---~nL~~L~L---------s~N~LtsLP~ 237 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE------LKSLPENLQ---GNIKTLYA---------NSNQLTSIPA 237 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC------CCcCChhhc---cCCCEEEC---------CCCccccCCh
Confidence 345667777777777766553 578888887665 223344332 47888888 6666677776
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
.+. .+|+.|+|++|.+..+|..+. .+|++|++++| .+..+|..+. ++|++|++++|.+ ..+|..+. ++|+
T Consensus 238 ~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~ 307 (754)
T PRK15370 238 TLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGIT 307 (754)
T ss_pred hhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCcc-ccCcccch--hhHH
Confidence 554 368888888888888887764 57888888877 5667777654 4788888888855 44554432 2444
Q ss_pred cc
Q 042981 603 TL 604 (876)
Q Consensus 603 ~L 604 (876)
.|
T Consensus 308 ~L 309 (754)
T PRK15370 308 HL 309 (754)
T ss_pred HH
Confidence 44
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.3e-13 Score=160.26 Aligned_cols=245 Identities=19% Similarity=0.236 Sum_probs=137.5
Q ss_pred CcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcC
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLK 575 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 575 (876)
.+...|++ +++.+..+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .
T Consensus 178 ~~~~~L~L---------~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~ 241 (754)
T PRK15370 178 NNKTELRL---------KILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--D 241 (754)
T ss_pred cCceEEEe---------CCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--c
Confidence 34677777 6666777776664 478888888888888887664 58888888887 5667776553 4
Q ss_pred CCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCccc
Q 042981 576 KMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNM 655 (876)
Q Consensus 576 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l 655 (876)
+|+.|++++|.+ ..+|..+. ++|+.| +++.+.+..++. .+.
T Consensus 242 ~L~~L~Ls~N~L-~~LP~~l~--s~L~~L----------~Ls~N~L~~LP~------------------------~l~-- 282 (754)
T PRK15370 242 TIQEMELSINRI-TELPERLP--SALQSL----------DLFHNKISCLPE------------------------NLP-- 282 (754)
T ss_pred cccEEECcCCcc-CcCChhHh--CCCCEE----------ECcCCccCcccc------------------------ccC--
Confidence 688888888865 46665543 355555 233333332221 010
Q ss_pred ccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-C
Q 042981 656 KNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-L 734 (876)
Q Consensus 656 ~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L 734 (876)
.+|+.|++++|.+.... ..+ +.+|+.|++.+|....+|..+ .++|+.|++++|.+.+ +|. .-.+ |
T Consensus 283 ~sL~~L~Ls~N~Lt~LP--------~~l--p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~-~l~~sL 348 (754)
T PRK15370 283 EELRYLSVYDNSIRTLP--------AHL--PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPA-SLPPEL 348 (754)
T ss_pred CCCcEEECCCCccccCc--------ccc--hhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CCh-hhcCcc
Confidence 23444555444432100 000 124555555555555555433 2466666666666543 332 1113 6
Q ss_pred ceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeec
Q 042981 735 EKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIW 814 (876)
Q Consensus 735 ~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 814 (876)
+.|++++|... .++. . ..++|+.|++++| .+..+ |..+ .++|+.|+++
T Consensus 349 ~~L~Ls~N~L~-~LP~--------------------~--lp~~L~~LdLs~N-~Lt~L------P~~l--~~sL~~LdLs 396 (754)
T PRK15370 349 QVLDVSKNQIT-VLPE--------------------T--LPPTITTLDVSRN-ALTNL------PENL--PAALQIMQAS 396 (754)
T ss_pred cEEECCCCCCC-cCCh--------------------h--hcCCcCEEECCCC-cCCCC------CHhH--HHHHHHHhhc
Confidence 66666665421 1111 0 1346777777766 34432 2222 2467788888
Q ss_pred cCccCCCCCCCC----CCCCCccEEEEecCCC
Q 042981 815 YCPRLRVLPDYL----FQSTTLQKLSISYCPI 842 (876)
Q Consensus 815 ~c~~l~~lp~~l----~~l~~L~~L~l~~~~~ 842 (876)
+| .+..+|..+ ..++++..|++.+|+.
T Consensus 397 ~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 397 RN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 87 455666543 3346778888888875
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.4e-15 Score=133.37 Aligned_cols=166 Identities=25% Similarity=0.326 Sum_probs=97.4
Q ss_pred cCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccC
Q 042981 526 KLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLE 605 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 605 (876)
++.+...|-||+|.++.+|+.|..|.+|+.|++.+| .++++|..++.|++|++|+++-|++ ..+|.+||.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levl- 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVL- 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhh-
Confidence 455566666666666666666666677777776665 5666666667777777776666643 5566666666666666
Q ss_pred ceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCC
Q 042981 606 KFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQP 685 (876)
Q Consensus 606 ~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~ 685 (876)
|+..+.+.+ ...+..|..++.|+.|+|+.|.+. .+......
T Consensus 108 ---------dltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe--------~lp~dvg~ 148 (264)
T KOG0617|consen 108 ---------DLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE--------ILPPDVGK 148 (264)
T ss_pred ---------hcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc--------cCChhhhh
Confidence 222221111 111223444555555555555431 11122223
Q ss_pred CCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc
Q 042981 686 PLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP 733 (876)
Q Consensus 686 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp 733 (876)
+.+|+-|.+..+..-.+|..++.++.|++|++.+|++.-..|.++.+.
T Consensus 149 lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 344555555555556678888889999999999988765555555443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=1.7e-13 Score=161.72 Aligned_cols=153 Identities=29% Similarity=0.338 Sum_probs=112.4
Q ss_pred cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCc--ccccccc-cccCcccCeeeccCcc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNL--IREIPEN-VRKLIHLKYLNLSELC 539 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~--i~~lp~~-i~~L~~Lr~L~Ls~~~ 539 (876)
.+....|...+.++. ...+.. -..++.|++|-+ ..|. +..++.. |..|+.|++|||++|.
T Consensus 520 ~~~~~~rr~s~~~~~------~~~~~~--~~~~~~L~tLll---------~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK------IEHIAG--SSENPKLRTLLL---------QRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cchhheeEEEEeccc------hhhccC--CCCCCccceEEE---------eecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 455677888887665 111111 234557999988 5553 5566644 6889999999999876
Q ss_pred -ccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcc
Q 042981 540 -IERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDIST 618 (876)
Q Consensus 540 -i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~ 618 (876)
+.++|++|++|-+|++|+++++ .+..+|.++.+|++|.+|++..+.....+|..+..|++|++|..+.... ....
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~ 658 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDK 658 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccch
Confidence 7899999999999999999998 6889999999999999999999877666666666699999997665441 1113
Q ss_pred ccccccccCCCCCCeeee
Q 042981 619 CRLESLKNLQLLRECGIE 636 (876)
Q Consensus 619 ~~l~~L~~L~~L~~L~l~ 636 (876)
..+.++.+|..|+.+.+.
T Consensus 659 ~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSIT 676 (889)
T ss_pred hhHHhhhcccchhhheee
Confidence 345555566666555553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=2.4e-14 Score=144.82 Aligned_cols=133 Identities=23% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccccccCcccCe
Q 042981 454 GGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENVRKLIHLKY 532 (876)
Q Consensus 454 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~~L~~Lr~ 532 (876)
++.++|..+. +.-..+.+..|. +..+++.+|+.+++||.||| ++|.|+.| |+.|.+|..|-.
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~------I~~iP~~aF~~l~~LRrLdL---------S~N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDL---------SKNNISFIAPDAFKGLASLLS 119 (498)
T ss_pred CcccCcccCC--CcceEEEeccCC------cccCChhhccchhhhceecc---------cccchhhcChHhhhhhHhhhH
Confidence 3455565543 345667776665 67889999999999999999 77777775 677888998888
Q ss_pred eeccC-ccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCc-cCCCCCCCCcc
Q 042981 533 LNLSE-LCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPI-GISKLTSLRTL 604 (876)
Q Consensus 533 L~Ls~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 604 (876)
|-+.+ |.|+.+|. .|++|..||.|.+.-|+........+..|++|..|.+..|.+ ..++. .+..+.+++++
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTL 193 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchH
Confidence 87766 88999997 589999999999998866666777899999999999999955 55665 57778888887
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-14 Score=129.94 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=112.2
Q ss_pred cccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccc
Q 042981 461 SIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCI 540 (876)
Q Consensus 461 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i 540 (876)
.+.+++++..|.+++|. ...+++. +..+.+|++|++ .+|.++++|.+|+.|+.||.|+++-|.+
T Consensus 28 gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln~---------~nnqie~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLNL---------SNNQIEELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred cccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhhc---------ccchhhhcChhhhhchhhhheecchhhh
Confidence 34456677777776655 2333343 567788888888 7778888888888888888888888888
Q ss_pred cccchhhccCCcccEEeecCCCCC-ccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccc
Q 042981 541 ERLPKTLCELYNLQKLDIRWCEDL-RELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTC 619 (876)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~ 619 (876)
..+|..|+.++.|++|||.+|... ..+|..|..++.|+-|+++.|.+ ..+|..++++++||.|......- -.
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndl------l~ 164 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDL------LS 164 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCch------hh
Confidence 888888888888888888887433 35788888888888888888876 67788888888888884322111 11
Q ss_pred cccccccCCCCCCeeeeC
Q 042981 620 RLESLKNLQLLRECGIEG 637 (876)
Q Consensus 620 ~l~~L~~L~~L~~L~l~~ 637 (876)
..++++.|++|+.|.|.+
T Consensus 165 lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred CcHHHHHHHHHHHHhccc
Confidence 234566788888888877
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1e-12 Score=142.06 Aligned_cols=96 Identities=23% Similarity=0.200 Sum_probs=55.6
Q ss_pred hHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccc-------cchhhccCCcccEEeecC
Q 042981 488 LSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIER-------LPKTLCELYNLQKLDIRW 560 (876)
Q Consensus 488 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~-------lp~~i~~L~~L~~L~L~~ 560 (876)
....+..+..|++|+++++.+. ......++..+...+.|++|+++++.+.. ++..+.++++|+.|++++
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~----~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLG----EEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCc----HHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC
Confidence 3445666677777877433321 11113355556666677777777766542 334456667777777777
Q ss_pred CCCCccccccccCcCC---CceEecCCCCC
Q 042981 561 CEDLRELPAGIGKLKK---MRSLLNGGTPL 587 (876)
Q Consensus 561 ~~~l~~lp~~i~~L~~---L~~L~l~~~~~ 587 (876)
|......+..+..+.+ |++|++++|.+
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 6544444444544444 77777776644
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=1.4e-11 Score=133.30 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCc
Q 042981 459 PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSEL 538 (876)
Q Consensus 459 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~ 538 (876)
...+..+.+|+.|.+.++..... ....+...+...+.|+.|+++.+.+.. ....+..++..+..+++|++|+|++|
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~--~~~~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEE--AAKALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHH--HHHHHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcCceeEEEccCC
Confidence 33444556677777765541100 011233335566667777774443310 01122334455666777888888777
Q ss_pred ccc-ccchhhccCCc---ccEEeecCCCCCc----cccccccCc-CCCceEecCCCCCC
Q 042981 539 CIE-RLPKTLCELYN---LQKLDIRWCEDLR----ELPAGIGKL-KKMRSLLNGGTPLL 588 (876)
Q Consensus 539 ~i~-~lp~~i~~L~~---L~~L~L~~~~~l~----~lp~~i~~L-~~L~~L~l~~~~~~ 588 (876)
.+. ..+..+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|.+.
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 765 34444544444 8888887774331 233344555 77788888777654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.3e-10 Score=121.64 Aligned_cols=101 Identities=34% Similarity=0.523 Sum_probs=76.9
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI 571 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 571 (876)
+..|..|..|.| +.|.+..+|+.+++|..|.||+|+.|+++.+|..++.|+ |+.|-+++| +++.+|..+
T Consensus 94 ~~~f~~Le~liL---------y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~i 162 (722)
T KOG0532|consen 94 ACAFVSLESLIL---------YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEI 162 (722)
T ss_pred HHHHHHHHHHHH---------HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCccc
Confidence 566677777777 777777788888888888888888888888888877665 788888876 677788888
Q ss_pred cCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
+.+..|.+|+.+.|.+ ..+|..++.+.+|+.|
T Consensus 163 g~~~tl~~ld~s~nei-~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDL 194 (722)
T ss_pred ccchhHHHhhhhhhhh-hhchHHhhhHHHHHHH
Confidence 8778888888887755 5666666666666666
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.5e-10 Score=121.37 Aligned_cols=133 Identities=22% Similarity=0.344 Sum_probs=110.5
Q ss_pred eEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccccc
Q 042981 445 VRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENV 524 (876)
Q Consensus 445 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i 524 (876)
....+++.|.+..+|..+..+..|..+.++.|. +.. .+....++..|.+||| +.|.+..+|..+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~-ip~~i~~L~~lt~l~l---------s~NqlS~lp~~l 140 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC------IRT-IPEAICNLEALTFLDL---------SSNQLSHLPDGL 140 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc------cee-cchhhhhhhHHHHhhh---------ccchhhcCChhh
Confidence 455678888888888888888899999998775 222 3444778899999999 788888899988
Q ss_pred ccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCC
Q 042981 525 RKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
|.| -|+.|-+++|+++.+|+.++-+..|..||.+.| .+..+|..++.+.+|+.|++..|++ ..+|+.+.
T Consensus 141 C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l-~~lp~El~ 209 (722)
T KOG0532|consen 141 CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC 209 (722)
T ss_pred hcC-cceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh
Confidence 876 489999999999999999999999999999988 6888999999999999999999966 56676655
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.1e-09 Score=109.03 Aligned_cols=215 Identities=21% Similarity=0.163 Sum_probs=108.9
Q ss_pred ccCcccCeeeccCccccccch--hhccCCcccEEeecCCCCC--ccccccccCcCCCceEecCCCCCCccCCccCCCCCC
Q 042981 525 RKLIHLKYLNLSELCIERLPK--TLCELYNLQKLDIRWCEDL--RELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTS 600 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 600 (876)
.++.+|+...|.++.+...+. ....|++++.|||++|-.. ..+-..+..|++|+.|+++.|.+.. | ++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~--~~s--- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--F--ISS--- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--C--ccc---
Confidence 456677777777777666553 5666777777777776221 1223334577888888888775421 1 000
Q ss_pred CCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHH
Q 042981 601 LRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLL 680 (876)
Q Consensus 601 L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 680 (876)
..+. .+++|+.|.++.|.-. .......+..+++|+.|+|..|..
T Consensus 191 ~~~~---------------------~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~------------ 234 (505)
T KOG3207|consen 191 NTTL---------------------LLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEI------------ 234 (505)
T ss_pred cchh---------------------hhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhcccc------------
Confidence 0000 1223333344333211 011111223445555555555521
Q ss_pred hhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC--CCCCCCccc-CceEeecCCCCceEeCcccccCCC
Q 042981 681 EALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE--HFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEG 757 (876)
Q Consensus 681 ~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~ 757 (876)
.........-+..|+.|+|++|++.. ..+..+.+| |..|+++.+..-+.-.. ..
T Consensus 235 ------------------~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~---d~-- 291 (505)
T KOG3207|consen 235 ------------------ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP---DV-- 291 (505)
T ss_pred ------------------cceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC---Cc--
Confidence 00001112235566777777776654 345566677 77777666543221110 00
Q ss_pred CCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccC
Q 042981 758 SSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRL 819 (876)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 819 (876)
.+..-...||+|++|.+..+ +..+|.. ...+..+++|+.|.+..|+..
T Consensus 292 ---------~s~~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 292 ---------ESLDKTHTFPKLEYLNISEN-NIRDWRS----LNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ---------cchhhhcccccceeeecccC-ccccccc----cchhhccchhhhhhccccccc
Confidence 00001235788888877776 4555544 334456777777777666543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=1.6e-08 Score=112.49 Aligned_cols=102 Identities=33% Similarity=0.472 Sum_probs=85.3
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCc-ccCeeeccCccccccchhhccCCcccEEeecCCCCCcccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLI-HLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAG 570 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 570 (876)
...++.+..|++ .++.+..+|..++.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|..
T Consensus 112 ~~~~~~l~~L~l---------~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~ 181 (394)
T COG4886 112 LLELTNLTSLDL---------DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL 181 (394)
T ss_pred hhcccceeEEec---------CCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh
Confidence 345578999999 8888888888888774 999999999999999888999999999999998 68888887
Q ss_pred ccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 571 IGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 571 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
.+.+++|+.|++++|.+ ..+|..++.+..|++|
T Consensus 182 ~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l 214 (394)
T COG4886 182 LSNLSNLNNLDLSGNKI-SDLPPEIELLSALEEL 214 (394)
T ss_pred hhhhhhhhheeccCCcc-ccCchhhhhhhhhhhh
Confidence 77899999999999955 6777766666667777
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2e-08 Score=95.18 Aligned_cols=130 Identities=27% Similarity=0.297 Sum_probs=50.0
Q ss_pred cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIER 542 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~ 542 (876)
.+..++|.|++.++. +.. +..+-..+.+|++|+| ++|.+..++ .+..+++|+.|++++|.|+.
T Consensus 16 ~n~~~~~~L~L~~n~------I~~-Ie~L~~~l~~L~~L~L---------s~N~I~~l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ------IST-IENLGATLDKLEVLDL---------SNNQITKLE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ---------------------------S--TT-TT--EEE----------TTS--S--T-T----TT--EEE--SS---S
T ss_pred ccccccccccccccc------ccc-ccchhhhhcCCCEEEC---------CCCCCcccc-CccChhhhhhcccCCCCCCc
Confidence 445567888887765 222 2222235778899999 777777774 57778999999999999998
Q ss_pred cchhh-ccCCcccEEeecCCCCCcccc--ccccCcCCCceEecCCCCCCccCC----ccCCCCCCCCccCceeecC
Q 042981 543 LPKTL-CELYNLQKLDIRWCEDLRELP--AGIGKLKKMRSLLNGGTPLLKYMP----IGISKLTSLRTLEKFAMGG 611 (876)
Q Consensus 543 lp~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~~~ 611 (876)
+++.+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|++... + .-+..+++|+.|+...+..
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 87665 368999999999884 43332 3467889999999999976432 2 1245667777776554443
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=4.9e-07 Score=112.52 Aligned_cols=254 Identities=16% Similarity=0.186 Sum_probs=141.3
Q ss_pred HHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch-hHHHHH--------------
Q 042981 135 ELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVA-------------- 199 (876)
Q Consensus 135 ~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~-------------- 199 (876)
++.+.|... ...+++.|+|++|.||||++.+..+. ++.++|+++...- +...+.
T Consensus 21 rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 21 RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc
Confidence 455555432 25789999999999999999887752 2368999986332 211111
Q ss_pred --------------------HHHHHh-----------ccccccCCccChhhHH-hhhccCCCCCEEEEEcCchH---HHH
Q 042981 200 --------------------NAIIEG-----------LDDVWDGDYNKWEPFF-HCLKHGLHGSKILLTTRNES---VAR 244 (876)
Q Consensus 200 --------------------~~i~~~-----------lDdvw~~~~~~~~~l~-~~l~~~~~gs~iivTTR~~~---v~~ 244 (876)
..++.. |||+...+......+. ..++....+-++|||||... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHh
Confidence 111111 7888654433333333 33444455678889999842 111
Q ss_pred hhCCcceEeCC----CCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhcc
Q 042981 245 MMGSTNIIFIE----QLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWK 318 (876)
Q Consensus 245 ~~~~~~~~~l~----~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~ 318 (876)
........++. +|+.+|+ +|...... +--.+...+|.+.|+|.|+++..++..++....... ... +.
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~----~~ 242 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIEAAESSRLCDDVEGWATALQLIALSARQNNSSLH--DSA----RR 242 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCC-CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhh----Hh
Confidence 11123355566 8888888 55432211 112345678999999999999998877754421000 000 11
Q ss_pred ccc-cCCcchhhHhh-cccCCCCchhHHHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHHhhhhhcccc
Q 042981 319 VEE-IGQGLFAPLLL-SYNDLPSNSMVKRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGEEYFNISKFK 396 (876)
Q Consensus 319 ~~~-~~~~~~~~l~~-sy~~L~~~~~lk~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~~~~~ 396 (876)
+.. ....+...+.- -++.||+ +.+..++..|+++ .++.. +. ..+.... ..++.-+.......+.
T Consensus 243 ~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~~---~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 243 LAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLR---SMNDA-LI-----VRVTGEE---NGQMRLEELERQGLFI 308 (903)
T ss_pred hcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhcccc---cCCHH-HH-----HHHcCCC---cHHHHHHHHHHCCCee
Confidence 111 11234554443 3789999 8999999999987 23322 22 1111111 1222222222222222
Q ss_pred cCCCCCCcceEEcChHHHHHHHHhc
Q 042981 397 KDDDDDDIMSCKMHDIVHDFAQFVS 421 (876)
Q Consensus 397 ~~~~~~~~~~~~mHdlv~dla~~i~ 421 (876)
...++... .|+.|++++++.....
T Consensus 309 ~~~~~~~~-~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 309 QRMDDSGE-WFRYHPLFASFLRHRC 332 (903)
T ss_pred EeecCCCC-EEehhHHHHHHHHHHH
Confidence 21122223 6889999999987654
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.61 E-value=1e-07 Score=102.52 Aligned_cols=249 Identities=19% Similarity=0.161 Sum_probs=126.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
.+++|+++.++.+..++...... ......+.|+|++|+||||||+.+.+. ....|. ++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEeccc-ccChHHHHHHH
Confidence 56999999999988877642211 224567889999999999999999983 332221 121111 11111222222
Q ss_pred Hh--------ccccccCCccChhhHHhhhccC-------------------CCCCEEEEEcCchHHHHhhC--CcceEeC
Q 042981 204 EG--------LDDVWDGDYNKWEPFFHCLKHG-------------------LHGSKILLTTRNESVARMMG--STNIIFI 254 (876)
Q Consensus 204 ~~--------lDdvw~~~~~~~~~l~~~l~~~-------------------~~gs~iivTTR~~~v~~~~~--~~~~~~l 254 (876)
.. +|++..-.....+.+...+.+. .+.+-|..|||...+..... -...+++
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l 177 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRL 177 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeec
Confidence 22 6776433221222222222111 12344566777544433221 1347899
Q ss_pred CCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhcccc-ccCCcchhh
Q 042981 255 EQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVE-EIGQGLFAP 329 (876)
Q Consensus 255 ~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~ 329 (876)
++++.++. ++.... ....--.+....|++.|+|.|-.+..+...+ ..|..+.... .+. ..-......
T Consensus 178 ~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~I~~~~v~~~l~~ 249 (328)
T PRK00080 178 EFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--VITKEIADKALDM 249 (328)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--CCCHHHHHHHHHH
Confidence 99999887 222111 1112234578899999999996544444322 1222111100 000 000123344
Q ss_pred HhhcccCCCCchhHHHHHh-HhccCCCCceeC--------------hHHHHH-HHHHcCccccCC-ChhHHHHHHhhh
Q 042981 330 LLLSYNDLPSNSMVKRCFS-YCAIFPKEYNIK--------------KKELIS-LWMVQGYLNVEE-DEEIEMTGEEYF 390 (876)
Q Consensus 330 l~~sy~~L~~~~~lk~cfl-y~~~fp~~~~i~--------------~~~li~-~W~aeg~i~~~~-~~~~e~~~~~~~ 390 (876)
+...|..|+. ..+.-+. ....|+.+. +. .+..++ +-+..|||.... +....+.|.+|+
T Consensus 250 ~~~~~~~l~~--~~~~~l~~~~~~~~~~~-~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr~~~~~~~~~~ 324 (328)
T PRK00080 250 LGVDELGLDE--MDRKYLRTIIEKFGGGP-VGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVATPKAYEHL 324 (328)
T ss_pred hCCCcCCCCH--HHHHHHHHHHHHcCCCc-eeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchHHHHHHHHHHh
Confidence 5567777877 4455443 555665542 22 223344 556666664332 244445555554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-08 Score=104.79 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=104.5
Q ss_pred CCceEEEEeeecCCCCCc--ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGGASFP--MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
-+++|.+++.+......+ .....|+++|.|+++.|-.+ .......+...+++|+.|+|+.|.+....+.+ .
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~-- 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-T-- 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhcccccccccCCcccc-c--
Confidence 567888888887765543 35678999999999876421 12334566789999999999777664221111 1
Q ss_pred cccccccCcccCeeeccCcccc--ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCC--ccC
Q 042981 520 IPENVRKLIHLKYLNLSELCIE--RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMP--IGI 595 (876)
Q Consensus 520 lp~~i~~L~~Lr~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i 595 (876)
-..+.+|+.|.|+.|.++ .+-.-...+++|+.|+|.+|.....-......++.|+.|+|++|.+. .++ ..+
T Consensus 193 ----~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~ 267 (505)
T KOG3207|consen 193 ----TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKV 267 (505)
T ss_pred ----hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccc
Confidence 135789999999999988 33344557899999999998533333333456788999999999663 344 345
Q ss_pred CCCCCCCcc
Q 042981 596 SKLTSLRTL 604 (876)
Q Consensus 596 ~~l~~L~~L 604 (876)
+.++.|..|
T Consensus 268 ~~l~~L~~L 276 (505)
T KOG3207|consen 268 GTLPGLNQL 276 (505)
T ss_pred ccccchhhh
Confidence 667777766
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=5.3e-08 Score=92.39 Aligned_cols=123 Identities=24% Similarity=0.234 Sum_probs=51.9
Q ss_pred CCceEEEEeeecCCCCCccccc-CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIH-GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
+.+.|.|++.++.+..+ +.+. .+.+|+.|++++|. +..+ .. +..++.|++|++ ++|.+..+
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~------I~~l-~~-l~~L~~L~~L~L---------~~N~I~~i 79 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ------ITKL-EG-LPGLPRLKTLDL---------SNNRISSI 79 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--------S---TT-----TT--EEE-----------SS---S-
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCC------Cccc-cC-ccChhhhhhccc---------CCCCCCcc
Confidence 45679999999998875 3454 57899999998876 2222 22 678999999999 88888888
Q ss_pred cccc-ccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCccccc----cccCcCCCceEecC
Q 042981 521 PENV-RKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPA----GIGKLKKMRSLLNG 583 (876)
Q Consensus 521 p~~i-~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~ 583 (876)
++.+ ..+++|+.|+|++|.|..+- ..+..+++|++|+|.+|. +...+. .+..+|+|+.||-.
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 7666 46899999999999998654 357789999999999995 443333 36789999999853
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=7.5e-08 Score=107.20 Aligned_cols=186 Identities=27% Similarity=0.320 Sum_probs=119.0
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchhhccCC-cccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELY-NLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
..+.+...+..+..+..+..|++.+|.++.+|...+.+. +|+.|++++| .+..+|..++.+++|+.|+++.|.+ ..+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l 178 (394)
T COG4886 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDL 178 (394)
T ss_pred cccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhh
Confidence 445444444556667889999999999999999998885 9999999998 6888888899999999999999966 667
Q ss_pred CccCCCCCCCCccCceeecCccCCCcccccccccc---C-CCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEecc
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKN---L-QLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDE 667 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~---L-~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 667 (876)
|...+.+++|+.| +++++.+..++. + ..|..+.+++... ......+.++.++..+.+..|.
T Consensus 179 ~~~~~~~~~L~~L----------~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-----~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 179 PKLLSNLSNLNNL----------DLSGNKISDLPPEIELLSALEELDLSNNSI-----IELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhhhhhhhhe----------eccCCccccCchhhhhhhhhhhhhhcCCcc-----eecchhhhhcccccccccCCce
Confidence 7766688888888 556666666654 2 2366666655211 1112234455555555555443
Q ss_pred CCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC
Q 042981 668 EGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE 724 (876)
Q Consensus 668 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 724 (876)
.. .....+..+++++.|+++++....++. ++.+.+|+.|+++++.+..
T Consensus 244 ~~--------~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 244 LE--------DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ee--------eccchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 31 012223333445555555555444444 4445555555555554433
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-08 Score=101.65 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=48.8
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCcc----ccccch-------hhccCCcccEEeecC
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELC----IERLPK-------TLCELYNLQKLDIRW 560 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~----i~~lp~-------~i~~L~~L~~L~L~~ 560 (876)
...+..+..++||+|.|-.. -...+.+.+.+.++|+..+++.-. ..++|+ .+..+++|++|||+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~E----Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTE----AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred hcccCceEEEeccCCchhHH----HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 44556666666633332100 001133444455566666665432 124443 344566788888887
Q ss_pred CCCCcccccc----ccCcCCCceEecCCCCC
Q 042981 561 CEDLRELPAG----IGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 561 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~ 587 (876)
|-.-..-+.. +..+..|+||++.+|.+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 7543333333 45678888888888843
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.45 E-value=9.9e-07 Score=94.30 Aligned_cols=168 Identities=23% Similarity=0.196 Sum_probs=91.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC---CchhHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS---DTFEEIRVAN 200 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~~~~~~~~ 200 (876)
.+|||++..++.+..++...... ......+.++|++|+|||+||+++.+. ....|. .+..+ ...+....+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKPGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCchhHHHHHH
Confidence 46999999999998888643211 123556789999999999999999983 332221 12211 1112222222
Q ss_pred HHHHh----ccccccCCccChhhHHhhhccC-------------------CCCCEEEEEcCchHHHHhhC--CcceEeCC
Q 042981 201 AIIEG----LDDVWDGDYNKWEPFFHCLKHG-------------------LHGSKILLTTRNESVARMMG--STNIIFIE 255 (876)
Q Consensus 201 ~i~~~----lDdvw~~~~~~~~~l~~~l~~~-------------------~~gs~iivTTR~~~v~~~~~--~~~~~~l~ 255 (876)
.+-.. +|++..-.....+.+...+... .+.+-|..||+...+....- -...++++
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~ 157 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLE 157 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeC
Confidence 21111 6666433222222232222110 12444556777654433211 13467899
Q ss_pred CCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhhh
Q 042981 256 QLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATGN 297 (876)
Q Consensus 256 ~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 297 (876)
+++.++. ++.... ....--.+....|++.|+|.|-.+..++.
T Consensus 158 ~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 158 FYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 9999887 222111 11112245678899999999976654444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=6.1e-08 Score=95.27 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=54.7
Q ss_pred cCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
....|..||||+|.|+.+-+++.-++.++.|++++|. +..+-. +..|++|++|++++|.+ ..+...-.++.+.++|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccchh-HhhhhhHhhhcCEeee
Confidence 3466888999999999888888888899999999884 444433 78888899999988844 3333222345555555
No 39
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.40 E-value=5e-06 Score=92.52 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=108.0
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHH----
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR---- 197 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~---- 197 (876)
.++.++||+++.+++...+...-. +.....+.|+|++|+||||+++.++++..-....-..++|......+...
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999998854321 12345578999999999999999998432222112344554433222222
Q ss_pred -------------------HHHHHHHh-----------ccccccCC----ccChhhHHhhhccCCCCCE--EEEEcCchH
Q 042981 198 -------------------VANAIIEG-----------LDDVWDGD----YNKWEPFFHCLKHGLHGSK--ILLTTRNES 241 (876)
Q Consensus 198 -------------------~~~~i~~~-----------lDdvw~~~----~~~~~~l~~~l~~~~~gs~--iivTTR~~~ 241 (876)
+...+.+. ||+++.-. .+.+..+...+.. ..+++ ||.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 22222211 68776532 1122233222222 23444 566666554
Q ss_pred HHHhhC-------CcceEeCCCCCcccc--c--------cCCCcCCccchHHHHHHHHHHcCCCchHHHHhhhhh--c--
Q 042981 242 VARMMG-------STNIIFIEQLTEEES--F--------SGRSFEDCEKLEPIGRKIARKCKGLPLAAKATGNLL--R-- 300 (876)
Q Consensus 242 v~~~~~-------~~~~~~l~~L~~~~~--~--------f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L--~-- 300 (876)
+..... ....+.+.+++.++. + |....-....++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 433221 124678899998876 1 211111222334444444444566888877765432 1
Q ss_pred -CC--ccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCC
Q 042981 301 -SK--SILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPS 339 (876)
Q Consensus 301 -~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 339 (876)
++ -+.+.+..+.+... .....-.+..||.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~ 296 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPL 296 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCH
Confidence 11 23455555554321 1223345778887
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=1.1e-08 Score=103.24 Aligned_cols=173 Identities=17% Similarity=0.122 Sum_probs=100.2
Q ss_pred cccccCcccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCC----cccccc-------ccCcCCCceEecCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDL----RELPAG-------IGKLKKMRSLLNGGT 585 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l----~~lp~~-------i~~L~~L~~L~l~~~ 585 (876)
+.+..+..+.+|+||+|.+. .+.+.+.+.++|+.-++++- .. .++|.. +...++|+.|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 33456788999999999876 44556777888999888754 22 234443 345678899999888
Q ss_pred CCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchh---------hhccCcccc
Q 042981 586 PLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDED---------ERLGLHNMK 656 (876)
Q Consensus 586 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~---------~~~~l~~l~ 656 (876)
-+....++.+ ..| ++.+..|+.|.+.+|.--...... ......+.+
T Consensus 103 A~G~~g~~~l------~~l-------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~ 157 (382)
T KOG1909|consen 103 AFGPKGIRGL------EEL-------------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKP 157 (382)
T ss_pred ccCccchHHH------HHH-------------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCc
Confidence 5532222221 111 233556677777765332221111 222344556
Q ss_pred cCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCC-----CCchhhcccCCcEEEEecCCCC
Q 042981 657 NLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNI-----FPKWLTSLTNLRDLRLKSCVIC 723 (876)
Q Consensus 657 ~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~ 723 (876)
.|+.+....|.+...+. ...-..+..++.|+.+.+..+.+.. +-..+..+++|+.|+|.+|.+.
T Consensus 158 ~Lrv~i~~rNrlen~ga---~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGA---TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEEeeccccccccH---HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 77777777776643322 2233344455677777776665432 1112336677777777777653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.9e-07 Score=70.73 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=30.3
Q ss_pred ccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCC
Q 042981 529 HLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGT 585 (876)
Q Consensus 529 ~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 585 (876)
+|++|++++|.++.+|. .+.++++|++|++++|.....-|..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 4555556666666555322222334555666666666555
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=6.9e-08 Score=94.89 Aligned_cols=127 Identities=27% Similarity=0.301 Sum_probs=85.1
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
++.+..++++.|.+..+-++..-.|++|.|+++.|. +.. ... +..+.+|..||| ++|.+.++-
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~------i~~-v~n-La~L~~L~~LDL---------S~N~Ls~~~ 345 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR------IRT-VQN-LAELPQLQLLDL---------SGNLLAECV 345 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc------eee-ehh-hhhcccceEeec---------ccchhHhhh
Confidence 566777788888777776777777788888886654 111 122 566777788888 555555554
Q ss_pred cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccc--cccccCcCCCceEecCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLREL--PAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~ 587 (876)
..-.+|-+.+.|+|++|.|..+ +.+++|.+|..||+++| .+..+ -.+|++|+.|++|.+.+|++
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 4445566777788888877766 35777778888888777 34333 23577777777777777755
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6.2e-07 Score=104.57 Aligned_cols=92 Identities=27% Similarity=0.429 Sum_probs=78.1
Q ss_pred cceEEecCccccccCCCCCccc-ccccccccCcccCeeeccCcccc-ccchhhccCCcccEEeecCCCCCccccccccCc
Q 042981 497 CFRALVIGQRNFIFDPYPNLIR-EIPENVRKLIHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKL 574 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 574 (876)
.++.|+| +++.+. .+|..+++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|
T Consensus 419 ~v~~L~L---------~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGL---------DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEEC---------CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4777888 445444 57888999999999999999987 888889999999999999997777899999999
Q ss_pred CCCceEecCCCCCCccCCccCCC
Q 042981 575 KKMRSLLNGGTPLLKYMPIGISK 597 (876)
Q Consensus 575 ~~L~~L~l~~~~~~~~~p~~i~~ 597 (876)
++|++|++++|.+.+.+|..++.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCEEECcCCcccccCChHHhh
Confidence 99999999999888888887754
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.3e-08 Score=99.88 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=66.5
Q ss_pred CcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCch----hhcccCCcEEEEecCCCCC--C
Q 042981 652 LHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKW----LTSLTNLRDLRLKSCVICE--H 725 (876)
Q Consensus 652 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~----l~~l~~L~~L~L~~~~~~~--~ 725 (876)
+.+|+.|.+|+|+|+.+... ........ -.++|..|+++|+.-.-.-+. ...+++|..|+|++|.... .
T Consensus 256 ~~scs~L~~LNlsWc~l~~~---~Vtv~V~h--ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTE---KVTVAVAH--ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccch---hhhHHHhh--hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 44566666666666654211 00111111 124677777777653322222 2378999999999997654 2
Q ss_pred CCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccc
Q 042981 726 FPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAM 786 (876)
Q Consensus 726 lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 786 (876)
+..+-+++ |++|.++.|..+ +++.+.. +...|+|.+|++.+|
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~i--~p~~~~~-----------------l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYDI--IPETLLE-----------------LNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhcchheeeehhhhcCC--ChHHeee-----------------eccCcceEEEEeccc
Confidence 33466789 999999999754 3344333 345788888877776
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.30 E-value=2.6e-06 Score=88.29 Aligned_cols=123 Identities=25% Similarity=0.361 Sum_probs=78.7
Q ss_pred ccCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHH
Q 042981 121 IDEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 121 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 200 (876)
+....++|-...+.++++ ...+.-+-+||++|+||||||+.+.. .....| ..+|-.++-.+-.+
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 334456666665555553 34677788999999999999999987 444444 34444443333344
Q ss_pred HHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEE--EcCchHH---HHhhCCcceEeCCCCCccc
Q 042981 201 AIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL--TTRNESV---ARMMGSTNIIFIEQLTEEE 261 (876)
Q Consensus 201 ~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~ 261 (876)
.+++. +|.|..-+..+-+.+ +|.-..|.-|+| ||-|..- ....+...+|++++|+.+|
T Consensus 91 ~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 91 EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 44433 888876554444444 455556877777 7776632 2233457899999999988
Q ss_pred c
Q 042981 262 S 262 (876)
Q Consensus 262 ~ 262 (876)
-
T Consensus 168 i 168 (436)
T COG2256 168 I 168 (436)
T ss_pred H
Confidence 6
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.29 E-value=3.7e-06 Score=85.16 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=79.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch-hHHHHHHHHHHh----ccccccCC-ccChhh-HHhh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVANAIIEG----LDDVWDGD-YNKWEP-FFHC 223 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~----lDdvw~~~-~~~~~~-l~~~ 223 (876)
.+.+.|+|..|+|||+||+++++. .......+.|+.+.... ...++...+-.. +||+|... ...|+. +...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l 116 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDL 116 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHH
Confidence 357899999999999999999983 33334456777765311 111222222211 89999742 245664 4444
Q ss_pred hccC-CCCCEEEEEcCc----------hHHHHhhCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCC
Q 042981 224 LKHG-LHGSKILLTTRN----------ESVARMMGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGL 288 (876)
Q Consensus 224 l~~~-~~gs~iivTTR~----------~~v~~~~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~Gl 288 (876)
+... ..|+.|||||.+ .+++..++....++++++++++. ++.... ..-.--.++..-|++++.|-
T Consensus 117 ~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 117 FNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 4432 246666555443 46666666678999999998876 221110 11111234555666666654
Q ss_pred ch
Q 042981 289 PL 290 (876)
Q Consensus 289 Pl 290 (876)
.-
T Consensus 197 ~r 198 (229)
T PRK06893 197 MH 198 (229)
T ss_pred HH
Confidence 43
No 47
>PF05729 NACHT: NACHT domain
Probab=98.28 E-value=2e-06 Score=82.83 Aligned_cols=111 Identities=21% Similarity=0.320 Sum_probs=67.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccccc----CCeEEEEEeCCchhHH---HHHHHHHHh-------------------
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEI---RVANAIIEG------------------- 205 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~------------------- 205 (876)
+++.|+|.+|+||||++++++.+..-... +...+|+...+..+.. .+...+..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999998874322222 4566677665533322 222222221
Q ss_pred ------ccc---cccCCcc----ChhhHH-hhhcc-CCCCCEEEEEcCchHH---HHhhCCcceEeCCCCCcccc
Q 042981 206 ------LDD---VWDGDYN----KWEPFF-HCLKH-GLHGSKILLTTRNESV---ARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 206 ------lDd---vw~~~~~----~~~~l~-~~l~~-~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~ 262 (876)
+|+ +...... .+..+. ..++. ...+.+|+||+|.... .........+++.++++++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 444 4332211 233333 33333 3568999999998766 33344456899999998876
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=6.2e-08 Score=99.94 Aligned_cols=286 Identities=17% Similarity=0.196 Sum_probs=142.9
Q ss_pred ccCcccCeeeccCcc-cc--ccchhhccCCcccEEeecCCCCCccc--cccccCcCCCceEecCCCCCCccCCccCCCCC
Q 042981 525 RKLIHLKYLNLSELC-IE--RLPKTLCELYNLQKLDIRWCEDLREL--PAGIGKLKKMRSLLNGGTPLLKYMPIGISKLT 599 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 599 (876)
.+++++..|++.++. |+ .+-..-..+++|+.|++..|..++.. -.-...+++|.+|+++.|..... .
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--------~ 232 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--------N 232 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--------C
Confidence 456666666666664 22 11122234667777777766544432 11123566777777776632211 1
Q ss_pred CCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHH
Q 042981 600 SLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQL 679 (876)
Q Consensus 600 ~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 679 (876)
+++.+ ......++.+...+|..... +++...-..+..+..+++..+.. ......
T Consensus 233 gv~~~-------------------~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~-----lTD~~~ 286 (483)
T KOG4341|consen 233 GVQAL-------------------QRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQ-----LTDEDL 286 (483)
T ss_pred cchHH-------------------hccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhcc-----ccchHH
Confidence 22222 11222244444444432211 11111112333445555443321 112223
Q ss_pred HhhCCCCCCccEEEEeecCCC-CCCch-hh-cccCCcEEEEecCCCCCC--CCCCC-ccc-CceEeecCCCCceEeCccc
Q 042981 680 LEALQPPLNVKELGIVSYGGN-IFPKW-LT-SLTNLRDLRLKSCVICEH--FPPLG-KLP-LEKLTLYGLYGVKRVGNEF 752 (876)
Q Consensus 680 ~~~l~~~~~L~~L~l~~~~~~-~lp~~-l~-~l~~L~~L~L~~~~~~~~--lp~l~-~Lp-L~~L~L~~~~~l~~~~~~~ 752 (876)
...-.....|+.|..+++... ..+-| ++ +.++|+.|-++.|+..+. +..++ .-+ |+.+++.+|...... .+
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL 364 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TL 364 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hH
Confidence 333334556777777665431 11111 22 567888888888874332 22233 234 777777665432211 12
Q ss_pred ccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCC-CCCCCCCCCCC
Q 042981 753 LGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLR-VLPDYLFQSTT 831 (876)
Q Consensus 753 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~ 831 (876)
.. ....+|.|+.|.+++|....+-.+. .....-..+..|+.|.+++|+.+. ..-..+..+++
T Consensus 365 ~s----------------ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 365 AS----------------LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hh----------------hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 21 1236888888888877655443110 001122367778888888887765 33345566788
Q ss_pred ccEEEEecCCCchhhccccccCCCCCCCcCEEEE
Q 042981 832 LQKLSISYCPIMEELRILEDHRTTDIPRLSSLEI 865 (876)
Q Consensus 832 L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i 865 (876)
|+.+++.+|..+..-+... +..++|++++...
T Consensus 428 Leri~l~~~q~vtk~~i~~--~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISR--FATHLPNIKVHAY 459 (483)
T ss_pred cceeeeechhhhhhhhhHH--HHhhCccceehhh
Confidence 8888888887765533322 3456777666544
No 49
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.25 E-value=1.2e-05 Score=84.41 Aligned_cols=145 Identities=16% Similarity=0.113 Sum_probs=84.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh-------------------------
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG------------------------- 205 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~------------------------- 205 (876)
..++.|+|+.|+||||+++.+++..... .+ ..+|+... ..+..++++.|...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~~-~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVNT-RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeCC-CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999853311 11 22343322 12222222222111
Q ss_pred ---------ccccccCCccChhhHHhhhcc---CCCCCEEEEEcCchHHHHhhC----------CcceEeCCCCCcccc-
Q 042981 206 ---------LDDVWDGDYNKWEPFFHCLKH---GLHGSKILLTTRNESVARMMG----------STNIIFIEQLTEEES- 262 (876)
Q Consensus 206 ---------lDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTTR~~~v~~~~~----------~~~~~~l~~L~~~~~- 262 (876)
+||+|.-+...++.+...... ......|++|.... ....+. ....+++++++.+|.
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 899988765566666533221 12222445555432 222211 134678999999987
Q ss_pred -ccCC----Cc-CCc-cchHHHHHHHHHHcCCCchHHHHhhhhh
Q 042981 263 -FSGR----SF-EDC-EKLEPIGRKIARKCKGLPLAAKATGNLL 299 (876)
Q Consensus 263 -~f~~----~~-~~~-~~l~~~~~~i~~~c~GlPlai~~~~~~L 299 (876)
++.. .. ... .--.+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2211 11 111 2235788999999999999999998776
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.4e-06 Score=67.64 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=50.6
Q ss_pred CcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccccccch-hhccCCcccEEeecCCC
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCE 562 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 562 (876)
++|++|++ ++|.+..+| ..+.++++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 1 p~L~~L~l---------~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDL---------SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEE---------TSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEEC---------CCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46889999 788888888 467899999999999999998875 68999999999999984
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.2e-06 Score=100.07 Aligned_cols=108 Identities=24% Similarity=0.268 Sum_probs=87.5
Q ss_pred cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-ccccccccCcccCeeeccCcccc-ccc
Q 042981 467 RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR-EIPENVRKLIHLKYLNLSELCIE-RLP 544 (876)
Q Consensus 467 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp 544 (876)
.++.|.+.++. +.+.++.. +..+++|+.|+| ++|.+. .+|..++.+.+|++|+|++|.++ .+|
T Consensus 419 ~v~~L~L~~n~-----L~g~ip~~-i~~L~~L~~L~L---------s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 419 FIDGLGLDNQG-----LRGFIPND-ISKLRHLQSINL---------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred EEEEEECCCCC-----ccccCCHH-HhCCCCCCEEEC---------CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 46778886554 33444444 789999999999 566554 68889999999999999999998 889
Q ss_pred hhhccCCcccEEeecCCCCCccccccccCc-CCCceEecCCCCCCc
Q 042981 545 KTLCELYNLQKLDIRWCEDLRELPAGIGKL-KKMRSLLNGGTPLLK 589 (876)
Q Consensus 545 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~ 589 (876)
..+++|++|++|+|++|...+.+|..+..+ .++..+++.+|..+.
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999998778999988764 567888888885433
No 52
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=3.9e-06 Score=86.02 Aligned_cols=43 Identities=33% Similarity=0.282 Sum_probs=34.9
Q ss_pred eeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 126 VCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 126 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
|+||+++.++|.+++..+ ..+.+.|+|..|+|||+|++++.+.
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH
Confidence 689999999999988753 3477889999999999999999873
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=2.1e-05 Score=84.10 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=110.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC----ccccccCCeEEEEE-eCCchhHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN----DEVKRNFEKVIWVC-VSDTFEEIRV 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~~ 198 (876)
.+++|.+..++.+..++..+ .-.+..-++|+.|+||||+|+.+++. .....|.|...|.. -+.......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 46889888889998888643 23467789999999999999988862 12345667766665 3344444443
Q ss_pred HHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHHH-Hh-hCCcceEeCCCCCcccc
Q 042981 199 ANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVA-RM-MGSTNIIFIEQLTEEES 262 (876)
Q Consensus 199 ~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~ 262 (876)
+++.+. +|++..-+...|+.++..+.....++.+|++|.+.+.. .. .+....+++.++++++.
T Consensus 79 -r~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 79 -RNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred -HHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 333332 77776656678999999999888899999998765422 11 22357999999999987
Q ss_pred --ccCCCcCCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 263 --FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 263 --~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
+...... .--.+.+..++..++|.|..+...
T Consensus 158 ~~~l~~~~~--~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 158 EKFISYKYN--DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221110 111334667889999988765433
No 54
>PF13173 AAA_14: AAA domain
Probab=98.08 E-value=1.1e-05 Score=73.47 Aligned_cols=106 Identities=24% Similarity=0.254 Sum_probs=72.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHH----HHHHHHHh---------ccccccCCccCh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR----VANAIIEG---------LDDVWDGDYNKW 217 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~----~~~~i~~~---------lDdvw~~~~~~~ 217 (876)
-+++.|.|+.|+|||||+++++++.. ....++++...+...... +.+.+.+. +|+|-.. ..|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~ 76 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDW 76 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccH
Confidence 36899999999999999999987422 335677887776544321 12222221 7888544 478
Q ss_pred hhHHhhhccCCCCCEEEEEcCchHHHHhh------CCcceEeCCCCCccc
Q 042981 218 EPFFHCLKHGLHGSKILLTTRNESVARMM------GSTNIIFIEQLTEEE 261 (876)
Q Consensus 218 ~~l~~~l~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~ 261 (876)
......+-+.....+|++|+.+......- |....+++.||+..|
T Consensus 77 ~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 77 EDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 88777776665678999999987766431 234577888888765
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.1e-05 Score=86.21 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=30.7
Q ss_pred CcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCc
Q 042981 527 LIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPI 593 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 593 (876)
+.++++|++++|.++.+|. -..+|++|.+++|..+..+|..+ .++|++|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 3455555555555555551 12245555555555555555433 23555566555533344443
No 56
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.05 E-value=3.4e-05 Score=85.68 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=90.0
Q ss_pred CceeeccchHHH---HHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC--chhHHHH
Q 042981 124 GEVCGRVDEKNE---LLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRV 198 (876)
Q Consensus 124 ~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~ 198 (876)
+++||.+..++. +..++.. .....+.|+|++|+||||+|+.+++. ....|.. +..+. .-+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~~~---l~a~~~~~~~ir~i 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPFEA---LSAVTSGVKDLREV 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EecccccHHHHHHH
Confidence 357777766544 5555542 24557788999999999999999973 3333321 11111 1122333
Q ss_pred HHHHHH-----h-----ccccccCCccChhhHHhhhccCCCCCEEEE--EcCchH--HH-HhhCCcceEeCCCCCcccc-
Q 042981 199 ANAIIE-----G-----LDDVWDGDYNKWEPFFHCLKHGLHGSKILL--TTRNES--VA-RMMGSTNIIFIEQLTEEES- 262 (876)
Q Consensus 199 ~~~i~~-----~-----lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~--v~-~~~~~~~~~~l~~L~~~~~- 262 (876)
...... . +|++|.-+....+.+...+.. |..++| ||.+.. +. ...+....+++.+++.++.
T Consensus 81 i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 333211 1 899987655555556555543 555555 344432 21 1223347899999999887
Q ss_pred -ccCCC----cCCc-cchHHHHHHHHHHcCCCchHHHHhh
Q 042981 263 -FSGRS----FEDC-EKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 263 -~f~~~----~~~~-~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
++... .... +--.+....|++.|+|-+..+..+-
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 22211 0011 2234567788889999886654433
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.03 E-value=8.3e-06 Score=79.10 Aligned_cols=166 Identities=23% Similarity=0.280 Sum_probs=84.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEE---eCCchhHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTFEEIRVAN 200 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~ 200 (876)
+++||.+.-++.+.-++..... .++.+.-+-+||++|+||||||+.+.+ +....|. +++ +....+...++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~dl~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGDLAAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHHHHHHHH
Confidence 5799988877776544432211 023577788999999999999999998 5555553 222 233344444444
Q ss_pred HHHHh----ccccccCCccChhhHHhhhccCC--------CC-----------CEEEEEcCchHHHHhhCC--cceEeCC
Q 042981 201 AIIEG----LDDVWDGDYNKWEPFFHCLKHGL--------HG-----------SKILLTTRNESVARMMGS--TNIIFIE 255 (876)
Q Consensus 201 ~i~~~----lDdvw~~~~~~~~~l~~~l~~~~--------~g-----------s~iivTTR~~~v~~~~~~--~~~~~l~ 255 (876)
.+-+. +|.+..-+...-+.+..++-++. .+ +-|=-|||...+..-+.. .-+.+++
T Consensus 98 ~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 98 NLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLE 177 (233)
T ss_dssp T--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE--
T ss_pred hcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchh
Confidence 43222 78886655444445555554421 11 123347776544433322 1244788
Q ss_pred CCCcccc---ccCCCc-CCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 256 QLTEEES---FSGRSF-EDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 256 ~L~~~~~---~f~~~~-~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
..+.+|- +-.... -..+--.+.+.+|+++|.|-|--+.-+
T Consensus 178 ~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 178 FYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp --THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 8887776 111111 112233567899999999999654433
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=3.7e-07 Score=94.33 Aligned_cols=306 Identities=19% Similarity=0.173 Sum_probs=155.3
Q ss_pred CcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccccc-ccCcccCeeeccCcc-ccc-
Q 042981 466 NRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENV-RKLIHLKYLNLSELC-IER- 542 (876)
Q Consensus 466 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i-~~L~~Lr~L~Ls~~~-i~~- 542 (876)
..||.|.+.++. .....-...+...++++..|.+..+....+. .-.++ ..+..|++|+|..|. |+.
T Consensus 138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHH
Confidence 457778887765 1122334455677888888887332211110 11122 456788888887743 442
Q ss_pred -cchhhccCCcccEEeecCCCCCcc--ccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccc
Q 042981 543 -LPKTLCELYNLQKLDIRWCEDLRE--LPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTC 619 (876)
Q Consensus 543 -lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~ 619 (876)
+-.-...+++|.+|+++.|..+.. +-.-...+.+|+.+.+.||. .. .|+.|....
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~--------~le~l~~~~----------- 264 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---EL--------ELEALLKAA----------- 264 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cc--------cHHHHHHHh-----------
Confidence 212244678888888888864433 11112233334444443431 11 111110000
Q ss_pred cccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhC-CCCCCccEEEEeecC
Q 042981 620 RLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEAL-QPPLNVKELGIVSYG 698 (876)
Q Consensus 620 ~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 698 (876)
.....+-++++..+..+++.. ....-.++..|+.|..+.+... ....+..+ ....+|+.|.+.++.
T Consensus 265 -----~~~~~i~~lnl~~c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~~------~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 265 -----AYCLEILKLNLQHCNQLTDED--LWLIACGCHALQVLCYSSCTDI------TDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred -----ccChHhhccchhhhccccchH--HHHHhhhhhHhhhhcccCCCCC------chHHHHHHhcCCCceEEEeccccc
Confidence 011112222332332222221 1111235667777777665432 22233333 345688888887765
Q ss_pred CCC-C-Cchhh-cccCCcEEEEecCCCCC--CCCCCC-ccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcc
Q 042981 699 GNI-F-PKWLT-SLTNLRDLRLKSCVICE--HFPPLG-KLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSS 771 (876)
Q Consensus 699 ~~~-l-p~~l~-~l~~L~~L~L~~~~~~~--~lp~l~-~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 771 (876)
.-. . -..++ +.+.|+.+++..|.... .+-.+. ..| |+.|.|++|..+...+...... .
T Consensus 332 ~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~---------------~ 396 (483)
T KOG4341|consen 332 QFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS---------------S 396 (483)
T ss_pred hhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh---------------c
Confidence 211 0 11122 56788888888876533 222222 346 8888888777554432221111 1
Q ss_pred cccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCC--CCCCCCCCCCccEEEE
Q 042981 772 VIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRV--LPDYLFQSTTLQKLSI 837 (876)
Q Consensus 772 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l 837 (876)
..+...|+.|.+++|+...+-.. +.+..+++|+.+++-+|..... +-..-.++|+++...+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccccceeeecCCCCchHHHH-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 23566788888888876665443 3455778888888888866552 2223455666665544
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=9.8e-07 Score=98.37 Aligned_cols=100 Identities=29% Similarity=0.378 Sum_probs=63.3
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI 571 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 571 (876)
+..+++|..|++ .+|.+..+...+..+.+|++|+|++|.|+.+.. +..+..|+.|++.+| .+..++ .+
T Consensus 91 l~~~~~l~~l~l---------~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDL---------YDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN-LISDIS-GL 158 (414)
T ss_pred cccccceeeeec---------cccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccC-cchhcc-CC
Confidence 456677777777 666666665556677777777777777776643 666677777777777 444443 35
Q ss_pred cCcCCCceEecCCCCCCccCCcc-CCCCCCCCcc
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIG-ISKLTSLRTL 604 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 604 (876)
..+++|+.+++++|.+...-+ . ...+.+|+.+
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l 191 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIEN-DELSELISLEEL 191 (414)
T ss_pred ccchhhhcccCCcchhhhhhh-hhhhhccchHHH
Confidence 557777777777775532222 1 2444555544
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.97 E-value=2e-05 Score=80.09 Aligned_cols=108 Identities=26% Similarity=0.328 Sum_probs=73.0
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh---------------ccccccC
Q 042981 148 QKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG---------------LDDVWDG 212 (876)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~---------------lDdvw~~ 212 (876)
++.+.-+.+||++|+||||||+.+.+..+-.. ..||..|-+-.-..-.++|+++ +|.|..-
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 34677888999999999999999998543322 5577776654444444555544 7888654
Q ss_pred CccChhhHHhhhccCCCCCEEEE--EcCchHH---HHhhCCcceEeCCCCCcccc
Q 042981 213 DYNKWEPFFHCLKHGLHGSKILL--TTRNESV---ARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 213 ~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~~ 262 (876)
+..+-+. .+|.-.+|+-++| ||.+..- +.......++.+++|+.++-
T Consensus 235 NksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 235 NKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred hhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 3222222 4677777887776 7777642 33345678999999998876
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.93 E-value=3.7e-05 Score=78.21 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=70.6
Q ss_pred cchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH-HHHHHHHHHh---
Q 042981 130 VDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVANAIIEG--- 205 (876)
Q Consensus 130 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~--- 205 (876)
+..++.+..++.. .....|.|+|..|+||||||+++++. ........+++.++.-.+. ..+...+-..
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lL 94 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQADPEVLEGLEQADLV 94 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEE
Confidence 3455666665432 24467889999999999999999973 3333445566665543221 1222211111
Q ss_pred -ccccccCCcc-Ch-hhHHhhhcc-CCCCCEEEEEcCchH---------HHHhhCCcceEeCCCCCcccc
Q 042981 206 -LDDVWDGDYN-KW-EPFFHCLKH-GLHGSKILLTTRNES---------VARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 206 -lDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+||+..-... .| +.+...+.. ...+.+||+||+... +...+.....+++.++++++.
T Consensus 95 vIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~ 164 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEK 164 (226)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHH
Confidence 7888654322 23 335444432 123457899887532 222332345788888887554
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.5e-06 Score=96.83 Aligned_cols=191 Identities=32% Similarity=0.390 Sum_probs=115.1
Q ss_pred cCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccC
Q 042981 494 KLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 494 ~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
.+..+..+.+ ..+.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++| .+..+. .+..
T Consensus 70 ~l~~l~~l~l---------~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNL---------RQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLST 138 (414)
T ss_pred HhHhHHhhcc---------chhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhh
Confidence 4556666667 6666666556678899999999999999988777889999999999999 566664 3788
Q ss_pred cCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccc-----cccCCCCCCeeeeCcCCCCCcchhh
Q 042981 574 LKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLES-----LKNLQLLRECGIEGLSNVSHLDEDE 648 (876)
Q Consensus 574 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~-----L~~L~~L~~L~l~~~~~~~~~~~~~ 648 (876)
++.|+.|++.+|.+ ..+ .++..+++|+.+ +++.+.+.. +..+..++.+.+.+... ..
T Consensus 139 l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l----------~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i----~~-- 200 (414)
T KOG0531|consen 139 LTLLKELNLSGNLI-SDI-SGLESLKSLKLL----------DLSYNRIVDIENDELSELISLEELDLGGNSI----RE-- 200 (414)
T ss_pred ccchhhheeccCcc-hhc-cCCccchhhhcc----------cCCcchhhhhhhhhhhhccchHHHhccCCch----hc--
Confidence 88899999999966 222 345556666666 333443332 24445555555554211 10
Q ss_pred hccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCC--ccEEEEeecCCCCCCchhhcccCCcEEEEecCCC
Q 042981 649 RLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLN--VKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVI 722 (876)
Q Consensus 649 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 722 (876)
...+..+..+..+++..|.+. .++.+..... |+.+.+.++.....+..+..+.++..|++.++++
T Consensus 201 i~~~~~~~~l~~~~l~~n~i~---------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 201 IEGLDLLKKLVLLSLLDNKIS---------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccchHHHHHHHHhhcccccce---------eccCcccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 111223333444444444331 1111222222 5566666666555444455556666666666554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.3e-05 Score=56.77 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=25.6
Q ss_pred cccCeeeccCccccccchhhccCCcccEEeecCCCCCccc
Q 042981 528 IHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLREL 567 (876)
Q Consensus 528 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 567 (876)
++|++|++++|.|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3577777777777777777777777777777777 34443
No 64
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.90 E-value=1.1e-05 Score=84.97 Aligned_cols=51 Identities=22% Similarity=0.089 Sum_probs=43.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch--hHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVANAII 203 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~ 203 (876)
+...|+|++|+||||||++||++.... +|+.++||.+++.+ ++.++++.|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 567899999999999999999965444 89999999999987 6677777764
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=3.8e-05 Score=72.05 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=64.4
Q ss_pred eeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH---
Q 042981 127 CGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII--- 203 (876)
Q Consensus 127 vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~--- 203 (876)
+|++..++.+...+... ..+.+.|+|.+|+||||+|+++++. ....-..++++..++..........+.
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 72 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHFL 72 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhhh
Confidence 36778888888877642 3467889999999999999999984 222223466666665443322221111
Q ss_pred ----Hh-----------ccccccCCccChhhHHhhhccC------CCCCEEEEEcCchH
Q 042981 204 ----EG-----------LDDVWDGDYNKWEPFFHCLKHG------LHGSKILLTTRNES 241 (876)
Q Consensus 204 ----~~-----------lDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTTR~~~ 241 (876)
.. +||++.........+...+... ..+.+||+||....
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00 8999753212223333333332 35778888887643
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.4e-07 Score=87.52 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=102.4
Q ss_pred CcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCC---CCchhhcccCCcEEEEecCCCCCCCCC
Q 042981 652 LHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNI---FPKWLTSLTNLRDLRLKSCVICEHFPP 728 (876)
Q Consensus 652 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~ 728 (876)
++.|++|+.|+|.++.+ ++.+...+....+|+.|+++++.|-. +.--+.+++.|..|+|++|.+....-.
T Consensus 206 Ls~C~kLk~lSlEg~~L-------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRL-------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHhhhhcccccccc-------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 45566666666666655 23344445555677777777665532 112244889999999999987553211
Q ss_pred --CCcc-c-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCc
Q 042981 729 --LGKL-P-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISI 804 (876)
Q Consensus 729 --l~~L-p-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 804 (876)
.... + |+.|+|+++...-... .+.. ....+|+|..|+|+++..++.-.+ ..+..
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~s-h~~t----------------L~~rcp~l~~LDLSD~v~l~~~~~-----~~~~k 336 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKS-HLST----------------LVRRCPNLVHLDLSDSVMLKNDCF-----QEFFK 336 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhh-HHHH----------------HHHhCCceeeeccccccccCchHH-----HHHHh
Confidence 2223 4 8888888865321111 1111 123689999999999887776333 45668
Q ss_pred ccccceeeeccCccCCCCCC---CCCCCCCccEEEEecCCC
Q 042981 805 MPRLSSLTIWYCPRLRVLPD---YLFQSTTLQKLSISYCPI 842 (876)
Q Consensus 805 l~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~~ 842 (876)
|+.|++|.++.|..+. |. .+...|+|.+|++.+|-.
T Consensus 337 f~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 9999999999996543 32 356678999999999843
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.84 E-value=2.4e-05 Score=79.34 Aligned_cols=51 Identities=24% Similarity=0.078 Sum_probs=44.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc--hhHHHHHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVANAI 202 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i 202 (876)
-..++|+|.+|+|||||++++|++.... +|+.++|+++++. +++.++++.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 4678999999999999999999965444 8999999998877 8899999988
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=4.7e-06 Score=82.36 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=30.7
Q ss_pred CcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCC------CCCCCCccEEE
Q 042981 775 FPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDY------LFQSTTLQKLS 836 (876)
Q Consensus 775 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~------l~~l~~L~~L~ 836 (876)
||.+-.|.+... ++.+|.. .+.+..||.|.-|.++++|....+-.+ +..+++++.|+
T Consensus 223 ~p~~~~LnL~~~-~idswas----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 223 FPSLSCLNLGAN-NIDSWAS----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcchhhhhccc-ccccHHH----HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 444444444433 3444433 345556777777777777766544321 34456666554
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=0.00011 Score=78.59 Aligned_cols=57 Identities=23% Similarity=0.463 Sum_probs=34.8
Q ss_pred cccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCC-CcCEEEEccCCCC
Q 042981 806 PRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIP-RLSSLEIEYCPKL 871 (876)
Q Consensus 806 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp-~L~~L~i~~c~~L 871 (876)
++|+.|.+++|..+ .+|..+ ..+|+.|+++.|... .+.. ....+| ++ .|.+.+|-++
T Consensus 156 sSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n~~~-sLeI----~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIEQKT-TWNI----SFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred CcccEEEecCCCcc-cCcccc--cccCcEEEecccccc-cccC----ccccccccc-Eechhhhccc
Confidence 68999999998654 455544 268899998876321 1111 122343 55 7777777544
No 70
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.80 E-value=0.0003 Score=80.15 Aligned_cols=259 Identities=18% Similarity=0.202 Sum_probs=142.0
Q ss_pred HHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch-hHHHHHHHHHHh------
Q 042981 133 KNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVANAIIEG------ 205 (876)
Q Consensus 133 ~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~------ 205 (876)
+.++++.|... .+.+++-|..++|.|||||+-+... +.. .=..++|.+.++.- +..++..-++..
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 45577777643 3689999999999999999988864 221 22468999987653 233333222222
Q ss_pred ---------------------------------------ccccccCCccChhh-HHhhhccCCCCCEEEEEcCchH---H
Q 042981 206 ---------------------------------------LDDVWDGDYNKWEP-FFHCLKHGLHGSKILLTTRNES---V 242 (876)
Q Consensus 206 ---------------------------------------lDdvw~~~~~~~~~-l~~~l~~~~~gs~iivTTR~~~---v 242 (876)
|||..-........ +.-.+.....+-..|||||+.- +
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 56654333233333 3333445566888999999862 2
Q ss_pred HHhhCCcceEeCC----CCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhh
Q 042981 243 ARMMGSTNIIFIE----QLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEM 316 (876)
Q Consensus 243 ~~~~~~~~~~~l~----~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~ 316 (876)
++.--.+...++. .++.+|+ ||.... ..+--+.-.+.+.+..+|-+-|+..++=.++...+.+.--..+.-.
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~- 253 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA- 253 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcC-CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch-
Confidence 2211112222222 2445555 333222 1222334567888899999999988888887443333222222210
Q ss_pred ccccccCCcchhhHh-hcccCCCCchhHHHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHHhhhhhccc
Q 042981 317 WKVEEIGQGLFAPLL-LSYNDLPSNSMVKRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGEEYFNISKF 395 (876)
Q Consensus 317 ~~~~~~~~~~~~~l~-~sy~~L~~~~~lk~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~~~~ 395 (876)
.+.+...|. --++.||+ ++|..++-||+++.= -..|+..-. .. .+-.++-++.-+.+.+
T Consensus 254 ------~~~l~dYL~eeVld~Lp~--~l~~FLl~~svl~~f----~~eL~~~Lt-----g~---~ng~amLe~L~~~gLF 313 (894)
T COG2909 254 ------ASHLSDYLVEEVLDRLPP--ELRDFLLQTSVLSRF----NDELCNALT-----GE---ENGQAMLEELERRGLF 313 (894)
T ss_pred ------HHHHHHHHHHHHHhcCCH--HHHHHHHHHHhHHHh----hHHHHHHHh-----cC---CcHHHHHHHHHhCCCc
Confidence 011111111 23688999 899999999988541 112222111 11 1222223333333444
Q ss_pred ccCCCCCCcceEEcChHHHHHHHHhcc
Q 042981 396 KKDDDDDDIMSCKMHDIVHDFAQFVSR 422 (876)
Q Consensus 396 ~~~~~~~~~~~~~mHdlv~dla~~i~~ 422 (876)
....++... .|+.|.+..||-+.--.
T Consensus 314 l~~Ldd~~~-WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 314 LQRLDDEGQ-WFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred eeeecCCCc-eeehhHHHHHHHHhhhc
Confidence 433334444 79999999999865433
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.7e-05 Score=55.17 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=35.1
Q ss_pred CcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccch
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPK 545 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~ 545 (876)
++|++|++ ++|.+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l---------~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDL---------SNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEE---------TSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEc---------cCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999 888899999889999999999999999997764
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.72 E-value=0.00015 Score=78.83 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=88.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-cCC-eEEEEEeCCch--------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-NFE-KVIWVCVSDTF-------- 193 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~-------- 193 (876)
++++|++..++.+..++... ..+.+-++|..|+||||+|+.+.+. +.. .+. ..+.+.+++-.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcchhhhh
Confidence 46889999999988877532 3345779999999999999998763 221 122 22344443211
Q ss_pred -----------------hHHHHHHHHHHh---------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-
Q 042981 194 -----------------EEIRVANAIIEG---------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE- 240 (876)
Q Consensus 194 -----------------~~~~~~~~i~~~---------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~- 240 (876)
.....++.+++. +||+..-....+..+...+.......++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 012233333321 67774433333445555555444567788877543
Q ss_pred HHHHhh-CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchH
Q 042981 241 SVARMM-GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 241 ~v~~~~-~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPla 291 (876)
.+.... .....+++.+++.++. +..... ....--.+....+++.++|-+-.
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 222222 2345777888887765 211110 01111234566677777765433
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00025 Score=77.30 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=96.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-------------------RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 184 (876)
.+++|.+..++.+...+.... -.+.+-++|+.|+||||+|+.+.+.-... ..+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999998988888876432 34667899999999999999987632100 112223
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~ 248 (876)
.++..+....... .+.+++. +|++..-+...++.+...+.......++|++|.+. .+... .+.
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 3333322222222 2333322 78876655556777887777766677777776543 34332 233
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchH
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPla 291 (876)
...+++.+++.++. +..... ....--.+....|++.++|-|-.
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 57899999998886 111100 01111234566778888887643
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.67 E-value=4.8e-05 Score=74.65 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=32.1
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.||||+++.+++...|. ... ....+++.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999996 222 346699999999999999999999884
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=7.2e-06 Score=71.70 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCcccccc
Q 042981 464 GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERL 543 (876)
Q Consensus 464 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l 543 (876)
...+|...++++|. ....++.+-..++.++.|+| .+|.+..+|..+..++.||.|+++.|.+...
T Consensus 51 ~~~el~~i~ls~N~------fk~fp~kft~kf~t~t~lNl---------~~neisdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 51 KGYELTKISLSDNG------FKKFPKKFTIKFPTATTLNL---------ANNEISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred CCceEEEEecccch------hhhCCHHHhhccchhhhhhc---------chhhhhhchHHHhhhHHhhhcccccCccccc
Confidence 33444455554443 23334444445555666666 5555666666666666666666666666666
Q ss_pred chhhccCCcccEEeecCCCCCcccccc
Q 042981 544 PKTLCELYNLQKLDIRWCEDLRELPAG 570 (876)
Q Consensus 544 p~~i~~L~~L~~L~L~~~~~l~~lp~~ 570 (876)
|.-|..|.+|-.|+..+| -..++|-+
T Consensus 116 p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 666666666666666555 34444443
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00034 Score=81.63 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=102.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-------------------RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 184 (876)
.++||.+..++.+.+++.... -...+-++|..|+||||+|+.+++.-... ..|.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 469999999998888886432 23556799999999999999998632111 012223
Q ss_pred EEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCCc
Q 042981 185 IWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGST 249 (876)
Q Consensus 185 ~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~ 249 (876)
+++..+... +++.+.+.+... ||++..-+...++.++..+-......++|++|.+ ..+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 444333212 223333332211 8888776667788888888776666776665554 444432 2345
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHH
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKA 294 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~ 294 (876)
..|++++|+.++. ...... +...--.+....|++.++|.|--+..
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 7999999999887 221111 11122345678899999998854433
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00035 Score=78.84 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=98.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcc----c---------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDE----V---------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---------------~~~F~~~ 184 (876)
.+++|.+..++.+...+.... -...+-++|+.|+||||+|+.+++.-. . ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999988888886432 335677899999999999999876211 0 0123344
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEE-EcCchHHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL-TTRNESVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~-~~~ 248 (876)
+++.......+..+ +.+++. +|++..-+...++.++..+.......++|+ ||....+... ...
T Consensus 91 ieidaas~~gvd~i-r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR 169 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR 169 (546)
T ss_pred EEeecccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh
Confidence 45544333333222 223222 888876666677888888887666676665 4444444433 234
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHh
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKAT 295 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~ 295 (876)
...+++++++.++- +..... ....--......|++.++|-+ -|+..+
T Consensus 170 c~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 170 CIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67999999998875 111100 011112334456677777744 344333
No 78
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00034 Score=80.00 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=103.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 184 (876)
.++||.+..++.|..++.... -.+.+-++|..|+||||+|+.+.+.-.. .+.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 469999999999988886432 2456679999999999999877652111 1123335
Q ss_pred EEEEeCCchhH---HHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCc
Q 042981 185 IWVCVSDTFEE---IRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGST 249 (876)
Q Consensus 185 ~wv~vs~~~~~---~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~ 249 (876)
+++..+....+ +++++..... ||++..-+...|+.++..+.......++|+||.+. .+... .+..
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 55555443332 2233322211 88887776667888888887766678888877764 33322 2335
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHh
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKAT 295 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~ 295 (876)
..|++++++.++. .+.... +...--.+..+.|++.++|-. -|+..+
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999998886 111100 111122455677888888744 455443
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.58 E-value=0.00041 Score=70.56 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=64.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh-HHHHHHHHHHh----ccccccCC-ccChhh-HHhh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVANAIIEG----LDDVWDGD-YNKWEP-FFHC 223 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~----lDdvw~~~-~~~~~~-l~~~ 223 (876)
...+.|+|+.|+|||+|++++++. ....-..+.++.+..... ..++.+.+-+. +||+-... ...|+. +...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHH
Confidence 357899999999999999999873 333333456666654221 12222222111 78884421 134554 2233
Q ss_pred hccC-CCC-CEEEEEcCch---------HHHHhhCCcceEeCCCCCcccc
Q 042981 224 LKHG-LHG-SKILLTTRNE---------SVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 224 l~~~-~~g-s~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+... ..| .++|+||+.. ++...+....+++++++++++-
T Consensus 123 ~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 123 YNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred HHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 3221 123 3699999743 3444555667889998886654
No 80
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00048 Score=77.88 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=100.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 184 (876)
.++||.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.-.. .+.|.-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999998887432 3467789999999999999988753111 1123334
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHH-hhCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVAR-MMGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~-~~~~ 248 (876)
+.+..+....+..+ +.++.. +|+|..-+...++.++..+.....+.++|++|.+. .+.. ..+.
T Consensus 90 iEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 90 IEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred EEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 44544433333322 333332 78887665566777887777766677888777653 3322 2234
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHH
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAA 292 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai 292 (876)
...+++++++.++. ...... +...--.+....|++.++|-+-.+
T Consensus 169 Cq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999998886 111100 111222345567888888866443
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.00056 Score=76.72 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=97.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc----------c-------------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR----------N------------- 180 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~------------- 180 (876)
.+++|.+..++.+...+... .-.+-+-++|..|+||||+|+.+++.-.... .
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 46899888888877766542 2335678999999999999999976321100 0
Q ss_pred CCeEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEE-EcCchHHHHh
Q 042981 181 FEKVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL-TTRNESVARM 245 (876)
Q Consensus 181 F~~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~ 245 (876)
...+..+.......+..+ +.+++. +|+++.-+...|+.+...+......+++|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDI-RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHH-HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 112233333333333332 333332 899988766788888888877666666654 5555555543
Q ss_pred h-CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 246 M-GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 246 ~-~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
. .....+++++++.++. ++.... +...--.+....|++.++|.+-
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 3 2356899999998886 221111 1111123445667788887653
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00048 Score=77.62 Aligned_cols=162 Identities=22% Similarity=0.176 Sum_probs=98.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccC------------------CeEE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF------------------EKVI 185 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------------------~~~~ 185 (876)
++++|.+..++.+..++.... -...+-++|+.|+||||+|+.+++.-...+.+ ..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 468999888888888776532 33567899999999999999987632211111 1234
Q ss_pred EEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHhh-CCc
Q 042981 186 WVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARMM-GST 249 (876)
Q Consensus 186 wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~-~~~ 249 (876)
++..+....... .+++.+. +|+++..+...++.+...+........+|++|.. ..+...+ ...
T Consensus 89 el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 89 EIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 444433222222 2223221 8988776666788888888776556566655543 3443322 235
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchH
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPla 291 (876)
..+++.+++.++. +..... ....--.+....|++.++|.+--
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRD 213 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6899999999887 221110 01111245667888888887743
No 83
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=6.1e-05 Score=87.69 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=94.7
Q ss_pred CCceEEEEeeecCC--CCCcccc-cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc
Q 042981 442 GDKVRHLGLNFEGG--ASFPMSI-HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR 518 (876)
Q Consensus 442 ~~~lr~L~l~~~~~--~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~ 518 (876)
..++++|++++... ..++..+ ..+|.|++|.+.+-. +.......++.++++|+.||+ +++.+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDI---------S~TnI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDI---------SGTNIS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-----ecchhHHHHhhccCccceeec---------CCCCcc
Confidence 35677888776442 1223333 357999999996543 233335566899999999999 777777
Q ss_pred ccccccccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCcccccc-------ccCcCCCceEecCCCCCCc
Q 042981 519 EIPENVRKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPAG-------IGKLKKMRSLLNGGTPLLK 589 (876)
Q Consensus 519 ~lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~~~ 589 (876)
.+ ..++.|++|+.|.+++-.+..-. ..+.+|++|++||++....... +.. -..||+||.||.+++.+..
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77 77899999999999988877543 3678899999999997643322 211 1358999999999886544
Q ss_pred c
Q 042981 590 Y 590 (876)
Q Consensus 590 ~ 590 (876)
.
T Consensus 265 ~ 265 (699)
T KOG3665|consen 265 E 265 (699)
T ss_pred H
Confidence 3
No 84
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.52 E-value=0.00015 Score=79.88 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=40.8
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.++||++++++|...|..... +.....+.|+|++|+|||+++++++++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999875321 123456899999999999999999974
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00043 Score=78.05 Aligned_cols=167 Identities=15% Similarity=0.126 Sum_probs=101.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc------------------------cc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV------------------------KR 179 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------------~~ 179 (876)
.++||.+..++.|.+++.... -.+.+-++|..|+||||+|+.+.+.-.. ..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999998887532 3456788999999999999888652111 01
Q ss_pred cCCeEEEEEeCCchhH---HHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh
Q 042981 180 NFEKVIWVCVSDTFEE---IRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM 245 (876)
Q Consensus 180 ~F~~~~wv~vs~~~~~---~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~ 245 (876)
.|...+++..+....+ +++.+.+... +|++..-+...++.++..+.....+.++|++| ....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 2223445554433333 3333332211 88887776677888888877655566655544 44555433
Q ss_pred h-CCcceEeCCCCCcccc--ccCCC--cCCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 246 M-GSTNIIFIEQLTEEES--FSGRS--FEDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 246 ~-~~~~~~~l~~L~~~~~--~f~~~--~~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
+ +....|.++.++.++. ..... .+...--.+..+.|++.++|.|.-+..+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 3357899999998887 11110 0111112344577899999988644433
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=4.3e-06 Score=92.18 Aligned_cols=87 Identities=29% Similarity=0.308 Sum_probs=49.9
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~ 591 (876)
+.|.+..+-+++.-+++|+.|||++|+++..- .+..|++|.+|||++| .+..+|.- ...+ +|..|.+++|.+ ..+
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL 247 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNAL-TTL 247 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHH-Hhh
Confidence 34444444455555666777777777766554 5666677777777766 45555542 1122 366667766644 222
Q ss_pred CccCCCCCCCCcc
Q 042981 592 PIGISKLTSLRTL 604 (876)
Q Consensus 592 p~~i~~l~~L~~L 604 (876)
.+|.+|++|+.|
T Consensus 248 -~gie~LksL~~L 259 (1096)
T KOG1859|consen 248 -RGIENLKSLYGL 259 (1096)
T ss_pred -hhHHhhhhhhcc
Confidence 345666666666
No 87
>PLN03025 replication factor C subunit; Provisional
Probab=97.51 E-value=0.00033 Score=75.09 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=75.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCC-eEEEEEeCCchhHHHH---H
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRV---A 199 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~---~ 199 (876)
.+++|.++.++.+..++... +.+-+-++|..|+||||+|+.+.+.- ....|. .++-+..++......+ .
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGIDVVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHHHHHHHH
Confidence 46889888788777766532 33446799999999999999988731 122232 2222333443332222 2
Q ss_pred HHHHHh-------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEeCCCCCcccc
Q 042981 200 NAIIEG-------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIFIEQLTEEES 262 (876)
Q Consensus 200 ~~i~~~-------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~ 262 (876)
+...+. +|++..-.....+.+...+......+++|+++... .+... ......++++++++++.
T Consensus 86 ~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 86 KMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 221111 78776554444555666565545567777776542 22211 11235788888887775
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=9.4e-06 Score=70.99 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=38.3
Q ss_pred CCCcccccccccc-cCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCC
Q 042981 513 YPNLIREIPENVR-KLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGT 585 (876)
Q Consensus 513 ~~~~i~~lp~~i~-~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 585 (876)
++|.+..+|+.+. ..+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.|+..+|
T Consensus 61 s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 61 SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCC
Confidence 4455555555542 233555555555555555555555555555555555 34444555555555555555554
No 89
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00056 Score=67.97 Aligned_cols=167 Identities=22% Similarity=0.223 Sum_probs=88.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
.++||.++-++.+.-++..... .++.+--+-++|++|+||||||.-+.+ +....+....=-.+-+.-|...++..+-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~tsGp~leK~gDlaaiLt~Le 102 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKITSGPALEKPGDLAAILTNLE 102 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEecccccccChhhHHHHHhcCC
Confidence 4799998888887766655432 145677889999999999999999998 4444432111111222223333333211
Q ss_pred Hh----ccccccCCccChhhHHhhhcc--------CCCCCEEE-----------EEcCchHHHHhhCC--cceEeCCCCC
Q 042981 204 EG----LDDVWDGDYNKWEPFFHCLKH--------GLHGSKIL-----------LTTRNESVARMMGS--TNIIFIEQLT 258 (876)
Q Consensus 204 ~~----lDdvw~~~~~~~~~l~~~l~~--------~~~gs~ii-----------vTTR~~~v~~~~~~--~~~~~l~~L~ 258 (876)
+. +|.+..-+...-+.+..++.+ .++++|.| -|||...+..-+.. .-+.+++.-+
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~ 182 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYT 182 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCC
Confidence 11 455544332222223333322 12344433 37876544432221 2355666666
Q ss_pred cccc---ccCCCc-CCccchHHHHHHHHHHcCCCchHHH
Q 042981 259 EEES---FSGRSF-EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 259 ~~~~---~f~~~~-~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
.+|- +-..+. -.-.--.+-+.+|+++..|-|--+.
T Consensus 183 ~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 183 VEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHH
Confidence 6654 111110 0111224567899999999996443
No 90
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=7.4e-05 Score=71.37 Aligned_cols=52 Identities=31% Similarity=0.559 Sum_probs=36.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-ccCCeEE----EEEeCCchhHHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVI----WVCVSDTFEEIRVANAIIE 204 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~----wv~vs~~~~~~~~~~~i~~ 204 (876)
+.|.|+|++|+||||||+.+++...+. -+||..+ |+.+++. ...+++++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~ 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHhc
Confidence 358899999999999999999854443 4578777 5555543 44445555554
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=97.45 E-value=0.0013 Score=66.68 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=63.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH-HHHHHHHHHh----ccccccC-CccChhh-HHhh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVANAIIEG----LDDVWDG-DYNKWEP-FFHC 223 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~----lDdvw~~-~~~~~~~-l~~~ 223 (876)
...+.|+|..|+|||.||+++++ .....-..++|++..+-... ..+.+.+-.. +||+-.. ....|+. +...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHH
Confidence 36789999999999999999987 33222235677776442221 1222222221 8988532 1235554 4444
Q ss_pred hcc-CCCCCEEEEEcCchH---------HHHhhCCcceEeCCCCCcccc
Q 042981 224 LKH-GLHGSKILLTTRNES---------VARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 224 l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+.. ...|..||+|++... +...++...++++++++.++-
T Consensus 123 ~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred HHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 432 234678999887432 222233346778888877665
No 92
>PRK08727 hypothetical protein; Validated
Probab=97.45 E-value=0.0009 Score=67.97 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=62.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH-HHHHHHHHHh----ccccccCC-ccChhh-HHhhh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVANAIIEG----LDDVWDGD-YNKWEP-FFHCL 224 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~----lDdvw~~~-~~~~~~-l~~~l 224 (876)
..+.|+|..|+|||+||+++++ ...+....+.++.+.+.... .+..+.+-.. +||+.... ...|.. +...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~ 119 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFH 119 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHH
Confidence 4599999999999999999987 34444445667765442211 1222222211 88885321 123443 33322
Q ss_pred cc-CCCCCEEEEEcCch---------HHHHhhCCcceEeCCCCCcccc
Q 042981 225 KH-GLHGSKILLTTRNE---------SVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 225 ~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
.. ..+|..||+|++.. ++...+.....+++++++.++-
T Consensus 120 n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 120 NRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred HHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 22 23466799999842 2333333456788888876654
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.44 E-value=0.00033 Score=82.04 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=71.1
Q ss_pred CceeeccchHH---HHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC--CchhHHHH
Q 042981 124 GEVCGRVDEKN---ELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS--DTFEEIRV 198 (876)
Q Consensus 124 ~~~vGr~~~~~---~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~ 198 (876)
++++|.+..+. .+...+.. .....+-|+|++|+||||||+.+++ .....|.. +..+ ..-+.+..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~~~~i~dir~~ 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAVLAGVKDLRAE 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhhhhhhHHHHHH
Confidence 45888877664 34444432 2455678999999999999999998 44444421 1111 11122222
Q ss_pred HHHHHH---h--------ccccccCCccChhhHHhhhccCCCCCEEEE--EcCch--HHHHh-hCCcceEeCCCCCcccc
Q 042981 199 ANAIIE---G--------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL--TTRNE--SVARM-MGSTNIIFIEQLTEEES 262 (876)
Q Consensus 199 ~~~i~~---~--------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~--~v~~~-~~~~~~~~l~~L~~~~~ 262 (876)
...+.. . ||||+.-+...++.+...+. .|+.++| ||.+. .+... ......+++++|+.++.
T Consensus 97 i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi 173 (725)
T PRK13341 97 VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDL 173 (725)
T ss_pred HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence 222211 1 89987655445555554443 3555655 34443 22222 22356899999998776
No 94
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=6.3e-05 Score=87.57 Aligned_cols=135 Identities=23% Similarity=0.115 Sum_probs=79.8
Q ss_pred cccCeeeccCcccc--ccchhhc-cCCcccEEeecCCCCC-ccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCc
Q 042981 528 IHLKYLNLSELCIE--RLPKTLC-ELYNLQKLDIRWCEDL-RELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRT 603 (876)
Q Consensus 528 ~~Lr~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 603 (876)
.+|++|++++...- .-|..++ -||.|++|.+.+-... .++-.-..++++|+.||++++.+. .+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 56777777775422 2233344 3788888888763221 112223457788888888888653 33 67888888888
Q ss_pred cCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCc--chhhhccCcccccCCceEEEeccC
Q 042981 604 LEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHL--DEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 604 L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~--~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
|......-.. ...+.+|-+|++|+.|+|+.-...... ...-...-..+++|+.|+.+++..
T Consensus 200 L~mrnLe~e~----~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFES----YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCc----hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8655443322 345667777888888888874332221 111111223467788888776654
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.43 E-value=0.00073 Score=72.82 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=88.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe--CCchhHH---HH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEEI---RV 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~---~~ 198 (876)
.+++|+++.++.+..++... ..+.+-|+|..|+||||+|+.+.+.- ....+.. .++.+ ++..... ..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDVIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHHHHHH
Confidence 45889999999998888542 34457999999999999999998731 1112221 22222 2222211 22
Q ss_pred HHHHHHh------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEeCCCCCcccc--
Q 042981 199 ANAIIEG------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 199 ~~~i~~~------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~-- 262 (876)
....... +|++..-....+..+...+......+++|+++... .+... ......+++.+++.++.
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHH
Confidence 2222221 56664333334455666666555567777777432 22111 12234788888888876
Q ss_pred ccCCCc--CCccchHHHHHHHHHHcCCCchH
Q 042981 263 FSGRSF--EDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 263 ~f~~~~--~~~~~l~~~~~~i~~~c~GlPla 291 (876)
+..... ....--.+....+++.++|-+--
T Consensus 169 ~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 169 RLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 111100 00111244567778888886644
No 96
>PRK09087 hypothetical protein; Validated
Probab=97.42 E-value=0.00042 Score=69.74 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=73.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh---ccccccCCccChhhHHhhhcc-
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG---LDDVWDGDYNKWEPFFHCLKH- 226 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~---lDdvw~~~~~~~~~l~~~l~~- 226 (876)
-+.+.|+|..|+|||+|++..++... ..++... .+... +...+... +||+.... ..-+.+...+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~-~~~~~-~~~~~~~~~l~iDDi~~~~-~~~~~lf~l~n~~ 113 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN-EIGSD-AANAAAEGPVLIEDIDAGG-FDETGLFHLINSV 113 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH-HcchH-HHHhhhcCeEEEECCCCCC-CCHHHHHHHHHHH
Confidence 36689999999999999999887422 1244332 12211 11222111 78884321 111223333322
Q ss_pred CCCCCEEEEEcCc---------hHHHHhhCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHH
Q 042981 227 GLHGSKILLTTRN---------ESVARMMGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 227 ~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
...|..||+|++. ++....+....+++++++++++- ++.... ....--+++..-|++.+.|-.-++.
T Consensus 114 ~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 114 RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence 1236679998873 34555566678999999998776 222111 1111124566667777776555544
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0019 Score=70.47 Aligned_cols=170 Identities=12% Similarity=0.041 Sum_probs=102.1
Q ss_pred CceeeccchHHHHHHHhhccCCc----CCCCeEEEEEEecCCchHHHHHHHHHcCccc------------------cccC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE----QQKGLHVISLVGLGGMGKTTLAQLAYNNDEV------------------KRNF 181 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------~~~F 181 (876)
.+++|.+..++.+...+...... +..-.+-+-++|+.|+||||+|+.+.+.--- ...+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889998889888888754210 0012456789999999999999887641000 0112
Q ss_pred CeEEEEEeC-CchhH---HHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-
Q 042981 182 EKVIWVCVS-DTFEE---IRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM- 245 (876)
Q Consensus 182 ~~~~wv~vs-~~~~~---~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~- 245 (876)
+-..++... ....+ +++.+.+... +|++..-+....+.+...+.....+..+|++|.+. .+...
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 223333322 22222 3333332221 78887666556677777777766677777777664 44433
Q ss_pred hCCcceEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 246 MGSTNIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 246 ~~~~~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
.+....+.+.+++.++. +....... -.+.+..+++.++|.|..+..+.
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~~~~~---~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVRRDGV---DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 23457999999998887 33221111 13556788999999987654443
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.33 E-value=0.00079 Score=78.16 Aligned_cols=47 Identities=34% Similarity=0.396 Sum_probs=38.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDE 176 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (876)
++++|++..++.+...+... ....+.|+|.+|+||||+|+.+++..+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46899999999888777432 345799999999999999999987543
No 99
>PTZ00202 tuzin; Provisional
Probab=97.32 E-value=0.00094 Score=71.16 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=57.4
Q ss_pred cCccCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH
Q 042981 119 SLIDEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 119 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 198 (876)
...+...|+||+++...+...|...+. ...+++.|.|++|+|||||++.+... .. + ...++... +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEECCC---CHHHH
Confidence 334567899999999999998865432 24569999999999999999999863 22 1 12233222 56899
Q ss_pred HHHHHHhcc
Q 042981 199 ANAIIEGLD 207 (876)
Q Consensus 199 ~~~i~~~lD 207 (876)
++.++.+|.
T Consensus 326 Lr~LL~ALG 334 (550)
T PTZ00202 326 LRSVVKALG 334 (550)
T ss_pred HHHHHHHcC
Confidence 999999976
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.00099 Score=74.45 Aligned_cols=170 Identities=20% Similarity=0.192 Sum_probs=93.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-------------------RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 184 (876)
+++||.+..++.+...+... .-.+.+-++|+.|+||||+|+.+.+.-... ..+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46999887777777766532 123567899999999999999997631110 011123
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHhh-CC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARMM-GS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~-~~ 248 (876)
..+..+.......+ +.|.+. +|++..-.....+.+...+........+|++|.+ ..+.... ..
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 33444332222222 223222 7877544334456666666554444444444433 4444433 34
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCC-CchHHHHhhhhh
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKG-LPLAAKATGNLL 299 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~G-lPlai~~~~~~L 299 (876)
...+++.+++.++. +..... ....--.+....|++.++| ++.|+..+..+.
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56899999998886 111100 0111123455677777754 567776665543
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0011 Score=75.00 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 184 (876)
.++||-+..++.+..++.... -...+-++|+.|+||||+|+.+.+.--- ...|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999886532 3356789999999999999888762111 1123334
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~ 248 (876)
+.+..+....+..+ +.+++. +|+|..-+.+..+.++..+.......++|++|.+ ..+... .+.
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 55554444444433 334432 8888776666777788887776667777766544 333322 223
Q ss_pred cceEeCCCCCcccc------ccCCCcCCccchHHHHHHHHHHcCCCch
Q 042981 249 TNIIFIEQLTEEES------FSGRSFEDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 249 ~~~~~l~~L~~~~~------~f~~~~~~~~~l~~~~~~i~~~c~GlPl 290 (876)
...+++++++.++- .+.... ..--......|++.++|-+-
T Consensus 170 c~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR 215 (509)
T PRK14958 170 CLQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVR 215 (509)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHH
Confidence 46788888887764 111111 11112334566777777653
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.30 E-value=0.0014 Score=66.52 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh----ccccccCCccChhhHHhhhc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG----LDDVWDGDYNKWEPFFHCLK 225 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----lDdvw~~~~~~~~~l~~~l~ 225 (876)
....+.|+|..|+|||+||+++++... .... ...+++..+.... ....-.. +||+..-+...-+.+...+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~~---~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~ 115 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLLA---FDFDPEAELYAVDDVERLDDAQQIALFNLFN 115 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHHH---HhhcccCCEEEEeChhhcCchHHHHHHHHHH
Confidence 345788999999999999999998321 2222 3445554432211 1111111 78885433222233444443
Q ss_pred cC-CCCC-EEEEEcCchHHHH--------hhCCcceEeCCCCCccc
Q 042981 226 HG-LHGS-KILLTTRNESVAR--------MMGSTNIIFIEQLTEEE 261 (876)
Q Consensus 226 ~~-~~gs-~iivTTR~~~v~~--------~~~~~~~~~l~~L~~~~ 261 (876)
.. ..|. .||+|++...... .+.....+++.++++++
T Consensus 116 ~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 116 RVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred HHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 21 2344 3666666432221 22224678888888764
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0011 Score=76.18 Aligned_cols=166 Identities=18% Similarity=0.182 Sum_probs=100.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-------------------RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 184 (876)
.++||.+..++.+...+.... -...+-++|..|+||||+|+.+.+.-... +.|.-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 469999988888888776431 23556799999999999999887631110 112223
Q ss_pred EEEEeCCchh---HHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCCc
Q 042981 185 IWVCVSDTFE---EIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGST 249 (876)
Q Consensus 185 ~wv~vs~~~~---~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~ 249 (876)
+.+..+.... ++++...+... +|++..-+....+.++..+-......++|++|.+ ..+... .+..
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 3444332222 23333332211 8888776666788888888776666666665554 444432 2346
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHH
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKA 294 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~ 294 (876)
..|++++++.++. ...... +....-......|++.++|.+--+..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 7999999999887 111100 11112234557788999997754433
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=97.27 E-value=0.0052 Score=69.83 Aligned_cols=158 Identities=21% Similarity=0.172 Sum_probs=89.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
.+++|.++.++++.+|+..-.. ....+.+-|+|++|+||||+|++++++ .. |+ .+-+..++...... ...++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~-i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADV-IERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHH-HHHHH
Confidence 4699999999999999865321 123678999999999999999999984 21 33 22334444322222 22221
Q ss_pred Hh----------------ccccccCCc----cChhhHHhhhccCCCCCEEEEEcCch-HHHH-hh-CCcceEeCCCCCcc
Q 042981 204 EG----------------LDDVWDGDY----NKWEPFFHCLKHGLHGSKILLTTRNE-SVAR-MM-GSTNIIFIEQLTEE 260 (876)
Q Consensus 204 ~~----------------lDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~-~~-~~~~~~~l~~L~~~ 260 (876)
.. +|++..-.. ..+..+...+... +..||+|+.+. .+.. .. .....+++.+++.+
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNACLMIEFKRLSTR 163 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhccceEEEecCCCHH
Confidence 11 677754321 2345555555532 34466666432 1111 11 23457888888877
Q ss_pred cc------ccCCCcCCccchHHHHHHHHHHcCCCchHHH
Q 042981 261 ES------FSGRSFEDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 261 ~~------~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
+. .+.... ..--.+....|++.++|-.-++.
T Consensus 164 ~i~~~L~~i~~~eg--i~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 164 SIVPVLKRICRKEG--IECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 75 111111 11123566788888888554443
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0015 Score=74.83 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=98.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc------------------------cc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV------------------------KR 179 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------------~~ 179 (876)
+++||-+..++.+..++.... -...+-++|..|+||||+|+.+.+.--. .+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 468998888888888876532 3467789999999999999888431100 01
Q ss_pred cCCeEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHH
Q 042981 180 NFEKVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVAR 244 (876)
Q Consensus 180 ~F~~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~ 244 (876)
.|.-.+++..+....+..+ +++++. +|+|..-+.+.++.++..+.......++|++| ....+..
T Consensus 91 ~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 2223344444433333222 333332 89998777677888888777765666666555 4344443
Q ss_pred h-hCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHH
Q 042981 245 M-MGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAA 292 (876)
Q Consensus 245 ~-~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai 292 (876)
. ......+++++++.++. +..... ....--.+....|++.++|-+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 2 33467899999998876 221100 111112345677777888766433
No 106
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.0012 Score=75.64 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=94.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 184 (876)
.++||.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.-.. ...|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 479999999999999887532 2457889999999999999988652100 0112222
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~ 248 (876)
+.+..+....+. ..+++++. +|++..-+....+.++..+.......++|++|.+. .+... .+.
T Consensus 91 lEidaAs~~gVd-~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 91 LEIDAASNTGID-NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred EEEeccccCCHH-HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 344434333332 22333332 78886555445666777776555566777776543 33221 223
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchH
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPla 291 (876)
...|++.+++.++. +..... +...--.+....|++.++|-+.-
T Consensus 170 C~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHH
Confidence 45778888888775 111100 01111234567778888877643
No 107
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0026 Score=68.79 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=102.6
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc-----ccc-------------------
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND-----EVK------------------- 178 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----~~~------------------- 178 (876)
-.+++|.++.++.+.+.+.... -...+-++|+.|+||+|+|..+.+.- .-.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3579999999898988887532 34568899999999999997665410 000
Q ss_pred -----ccCCeEEEEEe--CC-------chhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCC
Q 042981 179 -----RNFEKVIWVCV--SD-------TFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHG 230 (876)
Q Consensus 179 -----~~F~~~~wv~v--s~-------~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~g 230 (876)
....-..||.- .+ ...+.. .+++.+. +|++..-+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11122334431 01 122222 2333332 8888777777778888888776667
Q ss_pred CEEEEEcCch-HHHHh-hCCcceEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 231 SKILLTTRNE-SVARM-MGSTNIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 231 s~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
..+|++|.+. .+... .+....+.+.+++.++. +........ .......+++.++|.|..+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHcCCCHHHHHHHh
Confidence 7777777765 33322 23467999999999998 222211111 11222678999999998665553
No 108
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.25 E-value=0.00054 Score=74.30 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=54.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVA 199 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 199 (876)
.++++.++..+.++..|... +.|.++|++|+|||++|+++++.......|+.+.||++++.++..++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 45788888999999888742 457789999999999999999854444568889999999887755543
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0016 Score=73.64 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=97.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-------------------RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 184 (876)
.+++|.+..++.+...+.... -.+.+-++|+.|+||||+|+.+.+.-.-. ......
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 468999999999988886432 34668899999999999999886521100 001123
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~-~~~ 248 (876)
.++..+....+..+ +.+++. +|++..-+...++.+...+........+|++| ....+... ...
T Consensus 91 ieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 91 VELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred EEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 44543332322222 233322 78886655567777888777665566666555 33344332 234
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHhhh
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKATGN 297 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~~~ 297 (876)
...+++.+++.++. +..... ....--.+.+..+++.++|-+ .|+..+-.
T Consensus 170 cq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 170 CQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 56889999988876 111100 000111344567777777744 44444443
No 110
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0018 Score=72.04 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=96.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC------cc------------cc-ccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN------DE------------VK-RNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~~------------~~-~~F~~~ 184 (876)
.++||.+..++.+...+..+ .-.+-+-++|..|+||||+|+.+.+- +. +. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 56899888877777766542 12357889999999999999888651 00 11 123334
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcC-chHHHHhh-CC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTR-NESVARMM-GS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~-~~ 248 (876)
+.+..+....+..+ +.+++. +|++..-+.+..+.+...+.......++|++|. .+.+...+ ..
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 55565544443332 333332 788866555567778888877767777776654 34554432 34
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
...+++++++.++- +..... +...--.+....|++.++|-+-
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMR 212 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 57888888888775 111100 0111123345567777776553
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.23 E-value=0.00046 Score=73.55 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=43.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc--hhHHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVANAIIE 204 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~ 204 (876)
+.++|+|.+|.|||||++.+++.... ++|+..+||.+++. .++.++++.++.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 57899999999999999999995333 37999999999976 788888888844
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.23 E-value=0.0024 Score=69.99 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=95.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------cccCCe
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV--------------------KRNFEK 183 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~ 183 (876)
.+++|.+..++.+.+++.... -.+.+-++|..|+||||+|+.+.+.-.- ..+|+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999998886432 3457789999999999999887653110 113333
Q ss_pred EEEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHHhh-CC
Q 042981 184 VIWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VARMM-GS 248 (876)
Q Consensus 184 ~~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~-~~ 248 (876)
.++.-+... +.+++...+... +|++..-....++.+...+........+|++|.+.+ +...+ ..
T Consensus 89 -~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr 167 (355)
T TIGR02397 89 -IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR 167 (355)
T ss_pred -EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh
Confidence 344333211 233344332221 677644433456667777766556677777765543 33222 23
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
...+++.++++++. +..... ....--.+....+++.++|-|..+...
T Consensus 168 ~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 168 CQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHH
Confidence 45778888877765 111100 000111356677778888877554433
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0013 Score=72.58 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=96.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-------------------------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK------------------------- 178 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------- 178 (876)
.+++|.+..++.+..++..+ .-...+-++|+.|+||||+|+.+.+.-.-.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899888888888877642 123557799999999999998876521110
Q ss_pred ---ccCCeEEEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchH
Q 042981 179 ---RNFEKVIWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNES 241 (876)
Q Consensus 179 ---~~F~~~~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~ 241 (876)
.+++.. .+.-+... +++++...+... +|++..-+.+.|+.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 122222 22221222 222232222111 78876555557888888887766677766655 4444
Q ss_pred HHHhhC-CcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch-HHHHh
Q 042981 242 VARMMG-STNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL-AAKAT 295 (876)
Q Consensus 242 v~~~~~-~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 295 (876)
+..... ....++++++++++. +..... ....--.+.+..+++.++|-+- |+..+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 443322 245788999988776 222111 1111224567888899999664 44433
No 114
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.18 E-value=0.0027 Score=62.31 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=80.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc--------------------ccCCeEEEEEeC-CchhHHHHHHHHHHh----
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK--------------------RNFEKVIWVCVS-DTFEEIRVANAIIEG---- 205 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~~~~i~~~---- 205 (876)
...+-++|..|+||||+|+.+.+.-.-. .+.|. .++... .....+.+ +++++.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i-~~i~~~~~~~ 91 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV-RELVEFLSRT 91 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH-HHHHHHHccC
Confidence 3678899999999999998876521111 12222 333322 22333232 233332
Q ss_pred ----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHhh-CCcceEeCCCCCcccc--ccCCCcCCc
Q 042981 206 ----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARMM-GSTNIIFIEQLTEEES--FSGRSFEDC 271 (876)
Q Consensus 206 ----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~--~f~~~~~~~ 271 (876)
+|++..-+.+.++.+...+......+.+|++|++. .+...+ .....+++.+++.++. +.....
T Consensus 92 ~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g--- 168 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG--- 168 (188)
T ss_pred cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC---
Confidence 78776555556777888887766677777777654 333222 2356899999998886 222111
Q ss_pred cchHHHHHHHHHHcCCCch
Q 042981 272 EKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 272 ~~l~~~~~~i~~~c~GlPl 290 (876)
--.+.+..|++.++|.|.
T Consensus 169 -i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 -ISEEAAELLLALAGGSPG 186 (188)
T ss_pred -CCHHHHHHHHHHcCCCcc
Confidence 124567888888988775
No 115
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.17 E-value=1.3e-05 Score=88.56 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=96.2
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
+.++...+.++|.+..+-.++.-++.|++|+++.|. ... -+.+..++.|++||| +.|.+..+|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk------~~~--v~~Lr~l~~LkhLDl---------syN~L~~vp 225 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK------FTK--VDNLRRLPKLKHLDL---------SYNCLRHVP 225 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh------hhh--hHHHHhccccccccc---------ccchhcccc
Confidence 567777888888877666777788999999998776 122 225788999999999 667777777
Q ss_pred cc-cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc--ccccCcCCCceEecCCCCC
Q 042981 522 EN-VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP--AGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 522 ~~-i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~ 587 (876)
.- ...+ +|..|+|++|.++++- .|.+|++|+.||+++|- +...- .-++.|..|+.|+|.||++
T Consensus 226 ~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 226 QLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 32 2233 4999999999999884 58999999999999983 33211 2267888999999999965
No 116
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.16 E-value=0.0001 Score=72.20 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=43.7
Q ss_pred ccccccCcccCeeeccCcccc----ccc-------hhhccCCcccEEeecCCCCCcccccc----ccCcCCCceEecCCC
Q 042981 521 PENVRKLIHLKYLNLSELCIE----RLP-------KTLCELYNLQKLDIRWCEDLRELPAG----IGKLKKMRSLLNGGT 585 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~ 585 (876)
...|.+-.+|+..+++.-... ++| +.+-+|++|++.+|+.|-.-...|.. |++-+.|.||.+++|
T Consensus 51 ~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 51 CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 344444556666666543211 233 34567899999999988666565554 467788999999988
Q ss_pred CC
Q 042981 586 PL 587 (876)
Q Consensus 586 ~~ 587 (876)
.+
T Consensus 131 Gl 132 (388)
T COG5238 131 GL 132 (388)
T ss_pred CC
Confidence 44
No 117
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.0009 Score=80.53 Aligned_cols=222 Identities=16% Similarity=0.170 Sum_probs=126.8
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC---Cc--h-hHHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS---DT--F-EEIRV 198 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~--~-~~~~~ 198 (876)
.++||+.+.+.+...+..... ..-.|+.+.|..|||||+|++.|.. .+.+.+...+--..+ .+ + .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999998876542 3557999999999999999999987 444332211111111 11 1 11122
Q ss_pred HHHHHHh-------------------------------------------------------------------------
Q 042981 199 ANAIIEG------------------------------------------------------------------------- 205 (876)
Q Consensus 199 ~~~i~~~------------------------------------------------------------------------- 205 (876)
+++++.+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 2222221
Q ss_pred ----ccccccCCccChhhHHhhhccCC----CCCEEEE--EcCch-HHHH-hhCCcceEeCCCCCcccc------ccCCC
Q 042981 206 ----LDDVWDGDYNKWEPFFHCLKHGL----HGSKILL--TTRNE-SVAR-MMGSTNIIFIEQLTEEES------FSGRS 267 (876)
Q Consensus 206 ----lDdvw~~~~~~~~~l~~~l~~~~----~gs~iiv--TTR~~-~v~~-~~~~~~~~~l~~L~~~~~------~f~~~ 267 (876)
+||+..-|....+-+......-. ....|.. |.+.. .... .-.....+.+.||+..+. .++..
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 67873333222222222222211 0112333 22322 1111 122357899999999987 23321
Q ss_pred cCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCC------ccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCCch
Q 042981 268 FEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSK------SILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPSNS 341 (876)
Q Consensus 268 ~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 341 (876)
.....+..+.|++|-+|.|+-+.-+-..+... .+...|..-..+. ......+.+...+..-.+.||.
T Consensus 236 ---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~-- 308 (849)
T COG3899 236 ---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPG-- 308 (849)
T ss_pred ---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCH--
Confidence 34456788999999999999998888777653 2233343211110 0011112244456777889998
Q ss_pred hHHHHHhHhccCCCCce
Q 042981 342 MVKRCFSYCAIFPKEYN 358 (876)
Q Consensus 342 ~lk~cfly~~~fp~~~~ 358 (876)
..++..-..|++...+.
T Consensus 309 ~t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 309 TTREVLKAAACIGNRFD 325 (849)
T ss_pred HHHHHHHHHHHhCccCC
Confidence 78888888888865544
No 118
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0021 Score=70.66 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=92.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc--cC-----------------CeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR--NF-----------------EKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F-----------------~~~ 184 (876)
.++||.+..++.+..++.... -...+-++|..|+||||+|+.+.+.-.... .+ ..+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 468999988888888876432 234678999999999999999976311100 00 011
Q ss_pred EEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEE-EcCchHHHHh-hCCc
Q 042981 185 IWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL-TTRNESVARM-MGST 249 (876)
Q Consensus 185 ~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~-~~~~ 249 (876)
+.+...... +++++...+... +|++..-+.+.++.++..+........+|+ ||....+... .+..
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 122221222 222333332211 788877666778888887766555555554 4444455333 2345
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP 289 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP 289 (876)
..|.+.+++.++- ...... +...--.+....|++.++|-+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 6899999987765 111100 111112345567777787766
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.13 E-value=0.001 Score=66.67 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=65.2
Q ss_pred Cceeecc-chHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCC--eEEEEEeCCchhHH--H-
Q 042981 124 GEVCGRV-DEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEI--R- 197 (876)
Q Consensus 124 ~~~vGr~-~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~--~- 197 (876)
+.++|-. +..-...+.+.... +.....+.|+|..|+|||.|.+++++ ++.+... .+++++..+ |... .
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~~~-f~~~~~~~ 82 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSAEE-FIREFADA 82 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEHHH-HHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecHHH-HHHHHHHH
Confidence 3455642 22333444444332 22445678999999999999999998 4443322 355555432 2110 0
Q ss_pred H-------HHHHHHh-----ccccccCCc-cChhh-HHhhhcc-CCCCCEEEEEcCch---------HHHHhhCCcceEe
Q 042981 198 V-------ANAIIEG-----LDDVWDGDY-NKWEP-FFHCLKH-GLHGSKILLTTRNE---------SVARMMGSTNIIF 253 (876)
Q Consensus 198 ~-------~~~i~~~-----lDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~ 253 (876)
+ +++-++. +||+..-.. ..|.. +...+.. ...|-+||+|++.. ++...+...-+++
T Consensus 83 ~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~ 162 (219)
T PF00308_consen 83 LRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVE 162 (219)
T ss_dssp HHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEE
T ss_pred HHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhh
Confidence 0 1111111 899865432 23433 2232222 13467899999632 2333344455777
Q ss_pred CCCCCcccc
Q 042981 254 IEQLTEEES 262 (876)
Q Consensus 254 l~~L~~~~~ 262 (876)
+++++.++.
T Consensus 163 l~~pd~~~r 171 (219)
T PF00308_consen 163 LQPPDDEDR 171 (219)
T ss_dssp E----HHHH
T ss_pred cCCCCHHHH
Confidence 777765553
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0024 Score=73.36 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=97.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc------------------------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR------------------------ 179 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------ 179 (876)
.+++|.+..++.+...+..+. -..-+-++|..|+||||+|+.+.+.-....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 479999999999998886532 345688999999999999998876211000
Q ss_pred cCCeEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHH
Q 042981 180 NFEKVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVAR 244 (876)
Q Consensus 180 ~F~~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~ 244 (876)
...-++++.......+.. .+.|++. +|++..-+....+.+...+.....++++|++| ..+.+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 111233444333333333 2334333 78876555556777887777766677776655 4444443
Q ss_pred hh-CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHH
Q 042981 245 MM-GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAA 292 (876)
Q Consensus 245 ~~-~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai 292 (876)
.+ .....+++.+++.++. +..... ....--.+....|++.++|-+.-+
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDG 230 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 32 2356889999988776 221110 011112345667777888766444
No 121
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0051 Score=66.13 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=100.1
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-----c--cc---------------
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-----K--RN--------------- 180 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~--~~--------------- 180 (876)
-..++|-++..+.+...+.... -...+-|+|..|+||||+|..+.+.--- . ..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 4569999999999998886532 3456889999999999999877652110 0 00
Q ss_pred ---CCeEEEEEeC---------CchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEE
Q 042981 181 ---FEKVIWVCVS---------DTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKIL 234 (876)
Q Consensus 181 ---F~~~~wv~vs---------~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~ii 234 (876)
.+...++... +...+.. .+.+.+. +|++..-+....+.+...+........+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 0011223211 1111222 2233322 78887766667777888777655555655
Q ss_pred EEcCc-hHHHHhh-CCcceEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 235 LTTRN-ESVARMM-GSTNIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 235 vTTR~-~~v~~~~-~~~~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
++|.. ..+.... +....+++.+++.++. +.........--.+....+++.++|.|..+..+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55543 3333222 2357999999999998 2221111111124456789999999998765544
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.03 E-value=0.0018 Score=69.68 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=64.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHH---
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAN--- 200 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~--- 200 (876)
++++|.++.++.+..++..+ .-..++-++|..|+||||+|+.+++. .... ...+..+. .....+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHHHHHHHH
Confidence 56899999999999888642 23467788999999999999999873 2222 23344443 22222111
Q ss_pred HHHHh-----------ccccccC-CccChhhHHhhhccCCCCCEEEEEcCch
Q 042981 201 AIIEG-----------LDDVWDG-DYNKWEPFFHCLKHGLHGSKILLTTRNE 240 (876)
Q Consensus 201 ~i~~~-----------lDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~ 240 (876)
..... +|++... ..+..+.+...+.....+.++|+||...
T Consensus 90 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 90 RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11111 7887544 2122233444455555678899988654
No 123
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.02 E-value=0.0007 Score=74.05 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=41.3
Q ss_pred cCCceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHcCccccccC
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF 181 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (876)
...++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+++++ +....|
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 3457999999999998877432110 012345688999999999999999998 444443
No 124
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.01 E-value=0.00076 Score=61.77 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=39.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCcccc---ccCCeEEEEEeCCchhHHHHHHHHHHhc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVK---RNFEKVIWVCVSDTFEEIRVANAIIEGL 206 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l 206 (876)
+-+++.|+|.+|+|||++++++.++.... ..-..++|+.+....+...+...|++++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 62 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL 62 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 34788999999999999999998742110 0134567998888778888888888774
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.00 E-value=0.0015 Score=65.82 Aligned_cols=158 Identities=18% Similarity=0.106 Sum_probs=95.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEE-EEeCCchhHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIW-VCVSDTFEEIRVANAI 202 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i 202 (876)
.+++|.+..+.-+.+.+.. ....+.-.+|++|.|||+-|.+..+.---.+.|.+++- .++|+.-...-+-.++
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 4688988888888887765 25688899999999999988777653222345665533 4455432211111110
Q ss_pred ------HHh----------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHhh-CCcceEeCCCCC
Q 042981 203 ------IEG----------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARMM-GSTNIIFIEQLT 258 (876)
Q Consensus 203 ------~~~----------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~ 258 (876)
... ||++..-..+.|..++..+.+....+|.++.+-.- .+..-. +...-|.-++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 000 78887777789999999998877777766655443 222211 224567788888
Q ss_pred cccc----ccCCCcCCccchHHHHHHHHHHcCC
Q 042981 259 EEES----FSGRSFEDCEKLEPIGRKIARKCKG 287 (876)
Q Consensus 259 ~~~~----~f~~~~~~~~~l~~~~~~i~~~c~G 287 (876)
+++. -+-...+.-+--.+.-+.|++.++|
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 7766 1111111111223445677777777
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0044 Score=70.62 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=93.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 184 (876)
.+++|.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.-.. ...|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999998888888887432 2356679999999999999988652111 0123334
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~ 248 (876)
+++..+....+.. .+++++. +|++..-+....+.++..+........+|++|.+ ..+... .+.
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 4554433332222 2333332 7888665555677777777776566777666644 333321 122
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
...+++++++.++. ...... +...--......|++.++|.+-
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 46788888887775 111100 0111123345667777777553
No 127
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.96 E-value=0.00077 Score=63.56 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=14.5
Q ss_pred ccCeeeccCccccccch--hhccCCcccEEeecCC
Q 042981 529 HLKYLNLSELCIERLPK--TLCELYNLQKLDIRWC 561 (876)
Q Consensus 529 ~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~ 561 (876)
+|..|.|.+|+|.++-+ -+..++.|++|.+-+|
T Consensus 89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 34444444444443322 2334444555544444
No 128
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.95 E-value=0.00025 Score=69.59 Aligned_cols=193 Identities=20% Similarity=0.132 Sum_probs=109.8
Q ss_pred cccCcccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCCc----cccc-------cccCcCCCceEecCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDLR----ELPA-------GIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~-------~i~~L~~L~~L~l~~~~~ 587 (876)
+..+..+..++||+|.|. .+...|.+-.+|+..+++.- ..+ ++|+ .+-++++|+..+|+.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334667788888888776 44555777889999988764 222 2333 356889999999999988
Q ss_pred CccCCcc----CCCCCCCCccCceeecCccCCCcccccc-ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceE
Q 042981 588 LKYMPIG----ISKLTSLRTLEKFAMGGGVDDISTCRLE-SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLS 662 (876)
Q Consensus 588 ~~~~p~~----i~~l~~L~~L~~~~~~~~~~~ls~~~l~-~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 662 (876)
....|+. |++-+.|.+|....++-+. +.+..+. .|-+| +......+.+.|+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp--~aG~rigkal~~l-------------------a~nKKaa~kp~Le~vi 163 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP--IAGGRIGKALFHL-------------------AYNKKAADKPKLEVVI 163 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc--cchhHHHHHHHHH-------------------HHHhhhccCCCceEEE
Confidence 7666654 4556677777443332221 1111111 01000 0111233456677777
Q ss_pred EEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCch--------hhcccCCcEEEEecCCCCCCCC-----CC
Q 042981 663 LEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKW--------LTSLTNLRDLRLKSCVICEHFP-----PL 729 (876)
Q Consensus 663 L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~--------l~~l~~L~~L~L~~~~~~~~lp-----~l 729 (876)
...|.+...+.. ..--.+..+.+|+.+.+..|.+. |.. +..+++|+.|+|.+|.++..-. .+
T Consensus 164 cgrNRlengs~~---~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 164 CGRNRLENGSKE---LSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred eccchhccCcHH---HHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 766665322211 11223344467777777776643 432 2367888888888887643110 12
Q ss_pred Cccc-CceEeecCCC
Q 042981 730 GKLP-LEKLTLYGLY 743 (876)
Q Consensus 730 ~~Lp-L~~L~L~~~~ 743 (876)
...+ |+.|.+..|-
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 3345 6777777664
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0038 Score=72.33 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=99.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcc---------------------ccccCC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDE---------------------VKRNFE 182 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 182 (876)
.+++|.+..++.+..++... .-.+.+-++|..|+||||+|+.+.+.-. ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46999999999999888643 2346678999999999999987765211 122455
Q ss_pred eEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHhh-
Q 042981 183 KVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARMM- 246 (876)
Q Consensus 183 ~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~- 246 (876)
. ..+..+.......+. +++++ +|++..-+.+.++.+...+.....++.+|++| +...+....
T Consensus 92 ~-~~ld~~~~~~vd~Ir-~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 92 I-HELDAASNNSVDDIR-NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred e-EEecccccCCHHHHH-HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH
Confidence 3 233444333333332 33322 78876666567888888888766677766554 545554432
Q ss_pred CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 247 GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 247 ~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
....++++++++.++. +..... ..-.--.+....|++.++|-.-
T Consensus 170 SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 170 SRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred hhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 3467899999999886 221100 0111123456778888888553
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0066 Score=69.42 Aligned_cols=168 Identities=15% Similarity=0.106 Sum_probs=99.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc----------------------cccC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV----------------------KRNF 181 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----------------------~~~F 181 (876)
.++||.+..++.+..++..+. -...+-++|..|+||||+|+.+.+.-.- ..+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 469999998999888886432 3456789999999999999888752110 0112
Q ss_pred CeEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh-
Q 042981 182 EKVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM- 245 (876)
Q Consensus 182 ~~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~- 245 (876)
| ++.+..+....+..+ ++|.+. +|++..-+....+.|+..+........+|++| ....+...
T Consensus 88 d-vieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 88 D-VVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred e-EEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 2 334443332222222 233322 78887666667778888887766666666555 44444433
Q ss_pred hCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHhhhh
Q 042981 246 MGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKATGNL 298 (876)
Q Consensus 246 ~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~~~~ 298 (876)
.+....|++.+++.++. +..... ....--.+....|++.++|-+ -|+..+-.+
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23467899999988775 111100 011112345566777888755 344444443
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0048 Score=73.51 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=98.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc----------------------ccC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK----------------------RNF 181 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F 181 (876)
.++||.+..++.|..++.... -.+.+-++|..|+||||+|+.+.+.-... .++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999988888888887532 33567899999999999998886532110 122
Q ss_pred CeEEEEEeCCchh---HHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcC-chHHHHhh-
Q 042981 182 EKVIWVCVSDTFE---EIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTR-NESVARMM- 246 (876)
Q Consensus 182 ~~~~wv~vs~~~~---~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~- 246 (876)
| ++++.-..... ++++...+... ||++..-+.+.++.|+..+......+.+|++|. ...+...+
T Consensus 90 d-v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 90 D-VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred c-EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 2 23443322222 23332222211 788877666778888888887766777666554 34454433
Q ss_pred CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 247 GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 247 ~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
.....|++..++.++- +..... +...--.+....|++.++|-+.
T Consensus 169 SRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 169 SRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 3467899999988776 211110 1111123345678888888663
No 132
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0058 Score=70.36 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=97.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------------- 177 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------------- 177 (876)
.++||.+..++.+...+..+. -...+-++|+.|+||||+|+.+.+.-..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468998888888888776422 3355889999999999999877652111
Q ss_pred --cccCCeEEEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchH
Q 042981 178 --KRNFEKVIWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNES 241 (876)
Q Consensus 178 --~~~F~~~~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~ 241 (876)
..+|+...+ ...... +++.+...+... +|++..-+...++.+...+......+.+|++| +...
T Consensus 91 ~~g~~~n~~~~-d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 91 DAGTSLNISEF-DAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred hccCCCCeEEe-cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 123443222 221222 223333333111 78876655556777888887766666665555 4444
Q ss_pred HHHh-hCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCC-chHHHHhh
Q 042981 242 VARM-MGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGL-PLAAKATG 296 (876)
Q Consensus 242 v~~~-~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~Gl-Plai~~~~ 296 (876)
+... ......+++.+++.++. +..... ....--.+.+..|++.++|- -.|+..+.
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4433 23467899999998886 221110 01111245667888888884 44444433
No 133
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.89 E-value=0.00082 Score=70.93 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=42.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|.++.++++++++...........+++.++|++|.||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999997644321335689999999999999999999873
No 134
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.81 E-value=0.0055 Score=70.88 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=40.8
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.+.||+++.++|...|...-.. .....++-|.|++|.|||+.++.|.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999988753221 123367889999999999999999863
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0072 Score=68.94 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=98.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-------------------cCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-------------------NFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 184 (876)
.+++|.+..++.|...+... .-...+-++|..|+||||+|+.+.+.--... ...-+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46889887777777777542 1246778899999999999998876321110 01113
Q ss_pred EEEEeCCchhHHHH--HHHHHHh-----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHhh-CCc
Q 042981 185 IWVCVSDTFEEIRV--ANAIIEG-----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARMM-GST 249 (876)
Q Consensus 185 ~wv~vs~~~~~~~~--~~~i~~~-----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~-~~~ 249 (876)
+++..+....+..+ +.+.+.. +|++..-+...++.|...+........+|++|.+ ..+...+ ...
T Consensus 91 ~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRc 170 (624)
T PRK14959 91 VEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRC 170 (624)
T ss_pred EEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhh
Confidence 44433222222222 1111111 7877655555677787777654445566665554 4444332 234
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCC-chHHHHhhhhh
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGL-PLAAKATGNLL 299 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~Gl-Plai~~~~~~L 299 (876)
..+++++++.++. ++.... ....--.+....|++.++|- -.|+..+..++
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6889999998887 222100 01112245667788888884 46777766544
No 136
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.0082 Score=65.91 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=86.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc------cccCCeE-EEEEeCCch---
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV------KRNFEKV-IWVCVSDTF--- 193 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~-~wv~vs~~~--- 193 (876)
.+++|.+..++.+...+.... -.+.+-++|+.|+||||+|+.+.+.-.- ...|... +-+......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 468999999999988886432 3468889999999999999988763111 1122221 112211212
Q ss_pred hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh-hCCcceEeCCCCCccc
Q 042981 194 EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM-MGSTNIIFIEQLTEEE 261 (876)
Q Consensus 194 ~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~ 261 (876)
++..+...+... +|++..-....++.+...+........+|++| ....+... ......++.+++++++
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHH
Confidence 222222221111 67764433345666766665544455666555 33333222 2234578888888776
Q ss_pred c--ccCCCc--CCccchHHHHHHHHHHcCCCc
Q 042981 262 S--FSGRSF--EDCEKLEPIGRKIARKCKGLP 289 (876)
Q Consensus 262 ~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP 289 (876)
. +..... ..-.--.+....+++.++|-+
T Consensus 172 l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 172 IKEHLAGIAVKEGIKFEDDALHIIAQKADGAL 203 (367)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCH
Confidence 5 111100 000111345566667777643
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.022 Score=61.49 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=65.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHH----------h-----ccccccCCc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIE----------G-----LDDVWDGDY 214 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~----------~-----lDdvw~~~~ 214 (876)
....+-|||..|+|||.|++++.+ ...........+.++...-..+....+.+ + +||++.-..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 467899999999999999999999 56666653334444432222222222222 2 799875321
Q ss_pred -cChhh-HHhhhcc-CCCCCEEEEEcCc---------hHHHHhhCCcceEeCCCCCcccc
Q 042981 215 -NKWEP-FFHCLKH-GLHGSKILLTTRN---------ESVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 215 -~~~~~-l~~~l~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+.|+. +...|.. ...|-.||+|++. .++...+...-++++.+.+.+..
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 23333 3333332 1234489999863 34444555566778877776654
No 138
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00092 Score=66.64 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=109.9
Q ss_pred CCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCC-CCCCccEEEEeecCC--CCCC
Q 042981 627 LQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQ-PPLNVKELGIVSYGG--NIFP 703 (876)
Q Consensus 627 L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~--~~lp 703 (876)
.+.++.+++.+..- ... ......+.+++.|+.|+|+.|.+. ..+..++ |..+|+.|.++|... ....
T Consensus 70 ~~~v~elDL~~N~i-SdW-seI~~ile~lP~l~~LNls~N~L~--------s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI-SDW-SEIGAILEQLPALTTLNLSCNSLS--------SDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred hhhhhhhhcccchh-ccH-HHHHHHHhcCccceEeeccCCcCC--------CccccCcccccceEEEEEcCCCCChhhhh
Confidence 34556666655211 111 223344667778888888877663 2233342 556777777766442 1223
Q ss_pred chhhcccCCcEEEEecCCCCC---CCCCCCcc-c-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCccc
Q 042981 704 KWLTSLTNLRDLRLKSCVICE---HFPPLGKL-P-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKL 778 (876)
Q Consensus 704 ~~l~~l~~L~~L~L~~~~~~~---~lp~l~~L-p-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 778 (876)
+.+..++.++.|+++.|..-. +-...... | ++.|.+..|....+... .. ....||++
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~----------------l~r~Fpnv 201 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NK----------------LSRIFPNV 201 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--Hh----------------HHhhcccc
Confidence 334466777777777774211 11111111 2 44444444332211110 00 01258888
Q ss_pred ceeeccccccccccccccccccccCcccccceeeeccCccCCCCC--CCCCCCCCccEEEEecCCCchhhccccc--cCC
Q 042981 779 KSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP--DYLFQSTTLQKLSISYCPIMEELRILED--HRT 854 (876)
Q Consensus 779 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~l~~~~~--~~~ 854 (876)
..+.+..|| +..... ......+|.+-.|+++.+ .+.+.. ..+..+++|..|.++++|....+..... -.+
T Consensus 202 ~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 202 NSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hheeeecCc-ccchhh----cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 888887774 333222 234456788888888887 344322 2456789999999999998766544221 134
Q ss_pred CCCCCcCEEE
Q 042981 855 TDIPRLSSLE 864 (876)
Q Consensus 855 ~~lp~L~~L~ 864 (876)
+.||+++.|+
T Consensus 276 aRL~~v~vLN 285 (418)
T KOG2982|consen 276 ARLTKVQVLN 285 (418)
T ss_pred eeccceEEec
Confidence 6677777665
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.013 Score=66.15 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=97.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc----ccc----------------ccCCe
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND----EVK----------------RNFEK 183 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~----------------~~F~~ 183 (876)
.+++|-+..++.+...+... .-.++.-++|..|+||||+|+.+.+.- ... .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 46999888888888888543 234567899999999999998776521 000 1122
Q ss_pred EEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hC
Q 042981 184 VIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MG 247 (876)
Q Consensus 184 ~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~ 247 (876)
++.+..+.......+. ++++. +|++..-+.+..+.++..+......+++|++|.+. .+... ..
T Consensus 88 v~eldaas~~gId~IR-elie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S 166 (535)
T PRK08451 88 IIEMDAASNRGIDDIR-ELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS 166 (535)
T ss_pred EEEeccccccCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh
Confidence 2333333222233332 22221 78886666566777888887766677777777653 22221 22
Q ss_pred CcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHH
Q 042981 248 STNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKA 294 (876)
Q Consensus 248 ~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~ 294 (876)
....+++.+++.++. +..... ....--.+....|++.++|-+--+..
T Consensus 167 Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 167 RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 357899999998886 111100 11111245677888899988744433
No 140
>PRK06620 hypothetical protein; Validated
Probab=96.67 E-value=0.0039 Score=62.18 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=51.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh-----ccccccCCccChh--hHHhhh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG-----LDDVWDGDYNKWE--PFFHCL 224 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-----lDdvw~~~~~~~~--~l~~~l 224 (876)
+.+-|+|+.|+|||+|++.+++... . .++. ..+... ...+. +||+. .|. .+...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~----~~~~~~d~lliDdi~-----~~~~~~lf~l~ 106 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE----EILEKYNAFIIEDIE-----NWQEPALLHIF 106 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch----hHHhcCCEEEEeccc-----cchHHHHHHHH
Confidence 6789999999999999999887432 1 1221 111111 12222 78884 232 122222
Q ss_pred cc-CCCCCEEEEEcCch-------HHHHhhCCcceEeCCCCCccc
Q 042981 225 KH-GLHGSKILLTTRNE-------SVARMMGSTNIIFIEQLTEEE 261 (876)
Q Consensus 225 ~~-~~~gs~iivTTR~~-------~v~~~~~~~~~~~l~~L~~~~ 261 (876)
.. ...|..||+|++.. +....+...-+++++++++++
T Consensus 107 N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 107 NIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred HHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHH
Confidence 21 13477899998743 222333344577777777554
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.012 Score=68.33 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=93.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc---------------------ccCC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK---------------------RNFE 182 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 182 (876)
.+++|.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.-... .+.|
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 479999998888888886432 23566799999999999999887521110 0111
Q ss_pred eEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHhh-
Q 042981 183 KVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARMM- 246 (876)
Q Consensus 183 ~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~- 246 (876)
++.+..+....... .+++++. +|++..-+.+..+.+...+........+|++|.+ ..+....
T Consensus 91 -~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 91 -VIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred -EEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 23333322233222 2333332 7777554445566777777666556677666643 3343322
Q ss_pred CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHH
Q 042981 247 GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 247 ~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
.....+++++++.++. +..... ....--.+....|++.++|-+..+.
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2345778888877765 111100 0011123556788888888775443
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.017 Score=67.08 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=97.8
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-----------------cccCCeEEE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-----------------KRNFEKVIW 186 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----------------~~~F~~~~w 186 (876)
.+++|.+..++.+...+.... -.+.+-++|+.|+||||+|+.+.+.--. ..+++ +++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 468999998888888886532 3456778999999999999888652100 01111 223
Q ss_pred EEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEE-EcCchHHHHh-hCCcce
Q 042981 187 VCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILL-TTRNESVARM-MGSTNI 251 (876)
Q Consensus 187 v~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~-~~~~~~ 251 (876)
+...... +++.+...+-.. +|++..-....+..++..+-.......+|+ ||+...+... ......
T Consensus 92 idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ 171 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQR 171 (725)
T ss_pred EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhcee
Confidence 3322211 233444333321 788866555677788877776555656554 4444455432 334568
Q ss_pred EeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHhh
Q 042981 252 IFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKATG 296 (876)
Q Consensus 252 ~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~~ 296 (876)
+++.+++.++. +..... ....--.+.+..|++.++|-+ .|+..+.
T Consensus 172 ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 172 FNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999998886 221100 011112345677888888865 4444433
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.013 Score=65.50 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=92.8
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc---------------------cccCC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV---------------------KRNFE 182 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 182 (876)
.+++|.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.-.- ..+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999998888886432 2366789999999999999888652100 11233
Q ss_pred eEEEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hC
Q 042981 183 KVIWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MG 247 (876)
Q Consensus 183 ~~~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~ 247 (876)
.+++.-.... +++.+.+.+... +|++..-.....+.+...+.....+..+|++|.. ..+... ..
T Consensus 92 -~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 92 -VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred -eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 2223221222 222222222111 6776544334556677777665556677766643 333322 22
Q ss_pred CcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCc-hHHHHh
Q 042981 248 STNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLP-LAAKAT 295 (876)
Q Consensus 248 ~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlP-lai~~~ 295 (876)
....++++++++++. +..... ....--.+.+..|++.++|-+ .|+..+
T Consensus 171 Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 171 RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 356889999998886 211110 011112345677888888754 444443
No 144
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0062 Score=68.18 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhHHHHHhcccccceeeccc--------cCcc-CCCCCccccCccCCceeeccchHHHHHHHhhccCC
Q 042981 75 RQDIAVKIREINEKPDDIASQKDRFKFVENVS--------NHVK-KPKQARTTSLIDEGEVCGRVDEKNELLSKLLFESS 145 (876)
Q Consensus 75 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~ 145 (876)
...+-+.+.+=..|++.+-.....|++...-- +... ..-....+--.-+.+-+|.++-+++|++++-...-
T Consensus 353 P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kL 432 (906)
T KOG2004|consen 353 PDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKL 432 (906)
T ss_pred cHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhh
Confidence 34444445555556666666667776542210 0000 00001111122345689999999999999865432
Q ss_pred cCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH
Q 042981 146 EQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 146 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 198 (876)
.+.-+-++++++|++|||||.+|+.|+. ...+.|- -++|..-.|+.+|
T Consensus 433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI 480 (906)
T KOG2004|consen 433 RGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI 480 (906)
T ss_pred cccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh
Confidence 1133568999999999999999999997 5555552 3456665555544
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.52 E-value=0.017 Score=64.59 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=78.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccC--CeEEEEEeCCchhH-H-------HHHHHHHH---h-----ccccccC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEE-I-------RVANAIIE---G-----LDDVWDG 212 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~-~-------~~~~~i~~---~-----lDdvw~~ 212 (876)
..-+.|+|..|+|||+|++++.+ .+.... ..+++++..+-... . .......+ . +||+-..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 35588999999999999999998 333222 23445554321110 0 01111111 1 8998543
Q ss_pred Cc-cCh-hhHHhhhcc-CCCCCEEEEEcCch---------HHHHhhCCcceEeCCCCCcccc--ccCCCc---CC-ccch
Q 042981 213 DY-NKW-EPFFHCLKH-GLHGSKILLTTRNE---------SVARMMGSTNIIFIEQLTEEES--FSGRSF---ED-CEKL 274 (876)
Q Consensus 213 ~~-~~~-~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~--~f~~~~---~~-~~~l 274 (876)
.. +.| +.+...+.. ...|..||+|+... ++...+...-++.+++++.++- +..... .. ..--
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~ 298 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVT 298 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCC
Confidence 21 122 234443332 23455788886632 3333444566888999998876 211111 00 1123
Q ss_pred HHHHHHHHHHcCCCchHHHHhh
Q 042981 275 EPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 275 ~~~~~~i~~~c~GlPlai~~~~ 296 (876)
+++..-|++.+.|.|-.+.-+-
T Consensus 299 ~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 299 EEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHccCCCHHHHHHHH
Confidence 5677888888888776655444
No 146
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.51 E-value=0.0035 Score=59.28 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=76.6
Q ss_pred cCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhh-cccCCcEEEEecCCCCC--CCCCCCccc
Q 042981 657 NLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLT-SLTNLRDLRLKSCVICE--HFPPLGKLP 733 (876)
Q Consensus 657 ~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~--~lp~l~~Lp 733 (876)
....++|+.|.+ ..++.++.++.|..|.+.+|.+..+-..+. .+++|..|.|.+|.+.. ++.++..+|
T Consensus 43 ~~d~iDLtdNdl---------~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDL---------RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccch---------hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 445667776643 345567777888888888888888755555 67899999999999864 777888999
Q ss_pred -CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccc
Q 042981 734 -LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAM 786 (876)
Q Consensus 734 -L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 786 (876)
|++|.+-+|+.-.......+- +..+|+|+.|++...
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yv-----------------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYV-----------------LYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEE-----------------EEecCcceEeehhhh
Confidence 999999988765544333222 336899999988764
No 147
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.002 Score=58.09 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 148
>PRK08116 hypothetical protein; Validated
Probab=96.48 E-value=0.0035 Score=64.86 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=50.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH-------------HHHHHHHHHh----ccccccCCc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-------------IRVANAIIEG----LDDVWDGDY 214 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-------------~~~~~~i~~~----lDdvw~~~~ 214 (876)
..+.++|..|+|||.||.++++ .+...-..++++++++-.+. .++.+.+... |||+-.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC
Confidence 3578999999999999999998 44333345677775442221 1122222111 899954433
Q ss_pred cChhh--HHhhhcc-CCCCCEEEEEcCc
Q 042981 215 NKWEP--FFHCLKH-GLHGSKILLTTRN 239 (876)
Q Consensus 215 ~~~~~--l~~~l~~-~~~gs~iivTTR~ 239 (876)
.+|.. +...+.. -..|..+||||..
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45644 3333332 2346679999864
No 149
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.031 Score=60.39 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=56.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCC-e-EEEEEeCCchhHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-K-VIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~ 201 (876)
..+.+|+++.+++...|...-. +....-+.|+|..|+|||+.++.|.+ ++..... . ++.|.+-......+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3489999999999988875332 12223388999999999999999998 4444322 1 577777666667777777
Q ss_pred HHHh
Q 042981 202 IIEG 205 (876)
Q Consensus 202 i~~~ 205 (876)
|+++
T Consensus 93 i~~~ 96 (366)
T COG1474 93 ILNK 96 (366)
T ss_pred HHHH
Confidence 7763
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.028 Score=63.37 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=89.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcc-----c--------------cccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDE-----V--------------KRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~--------------~~~F~~~ 184 (876)
.+++|.+..++.+..++.... -.+.+-++|..|+||||+|+.+...-. . ...|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999998888886532 235667899999999999988765211 0 0112234
Q ss_pred EEEEeCCchh---HHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh-hCCc
Q 042981 185 IWVCVSDTFE---EIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM-MGST 249 (876)
Q Consensus 185 ~wv~vs~~~~---~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~-~~~~ 249 (876)
.++..+.... .+.+...+-.. +|++..-.....+.+...+........+|++| +...+... ....
T Consensus 91 ~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc 170 (486)
T PRK14953 91 IEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC 170 (486)
T ss_pred EEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 4444433222 22222222111 78876554445667777776655555665554 43333322 2234
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCch
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPL 290 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPl 290 (876)
..+++.+++.++- +..... ....--.+....|++.++|.+-
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr 215 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMR 215 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 5788888887775 111100 0011122445566667777544
No 151
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.40 E-value=0.023 Score=53.90 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=74.9
Q ss_pred eccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC----ccc--------------cccCCeEEEEEe
Q 042981 128 GRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN----DEV--------------KRNFEKVIWVCV 189 (876)
Q Consensus 128 Gr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~--------------~~~F~~~~wv~v 189 (876)
|-++..+.+.+.+... .-...+-++|..|+||+|+|..+.+. ... .....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4445556666666532 23457889999999999998776542 111 023445566655
Q ss_pred CCc---hhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHHh-hCCcc
Q 042981 190 SDT---FEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VARM-MGSTN 250 (876)
Q Consensus 190 s~~---~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~ 250 (876)
... .....+. .+.+. +|++..-+.+.+..++..+-....++++|++|++.+ +... .+...
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred ccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 443 4444443 55544 788887777888899999988888999999998764 3332 33456
Q ss_pred eEeCCCCC
Q 042981 251 IIFIEQLT 258 (876)
Q Consensus 251 ~~~l~~L~ 258 (876)
.+.+.+++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 66666654
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.025 Score=65.58 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=93.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc---------------------cCC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR---------------------NFE 182 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~ 182 (876)
.+++|.+..++.+..++.... -..-+-++|..|+||||+|+.+.+.--... ...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468999988888888887532 235677899999999999998876311100 000
Q ss_pred eEEEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHhh-
Q 042981 183 KVIWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARMM- 246 (876)
Q Consensus 183 ~~~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~- 246 (876)
.++.+.......+.. .+++++. +|++..-+.+.++.++..+........+|++|.+ ..+...+
T Consensus 91 D~~ei~~~~~~~vd~-IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 91 DVIEIDAASNTGVDN-IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred cEEEEeccccCCHHH-HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 122233222222222 2333332 7877655555677788887765555665555544 3443322
Q ss_pred CCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHH
Q 042981 247 GSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 247 ~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
.....+++..++.++. +..... ....--.+....|++.++|-+..+.
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2356788888887765 111100 0011112456778888888665443
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.34 E-value=0.015 Score=60.25 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=32.8
Q ss_pred ceeeccchHHHHHHHhhcc---------CCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFE---------SSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.+..+++|.+..... .-...+...-+.++|.+|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 4889887776665433210 000023445678999999999999999976
No 154
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.31 E-value=0.011 Score=56.33 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=60.0
Q ss_pred eeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH--
Q 042981 126 VCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII-- 203 (876)
Q Consensus 126 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~-- 203 (876)
+||....+.++++.+..... ...+ |-|+|..|+||+.+|+.+++.- ...-..-+-|.++. ++...+-..+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~p-VlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLP-VLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS--EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCC-EEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888888876443 1344 4599999999999999999832 11112223344443 23333333322
Q ss_pred ----------------Hh-------ccccccCCccChhhHHhhhccC------C-----CCCEEEEEcCc
Q 042981 204 ----------------EG-------LDDVWDGDYNKWEPFFHCLKHG------L-----HGSKILLTTRN 239 (876)
Q Consensus 204 ----------------~~-------lDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTTR~ 239 (876)
++ ||+|..-....-..|...+..+ . ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 22 7888765544445565555432 1 14678888774
No 155
>PRK07261 topology modulation protein; Provisional
Probab=96.30 E-value=0.0054 Score=58.90 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=25.0
Q ss_pred EEEEEecCCchHHHHHHHHHcCcccc-ccCCeEEEE
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVIWV 187 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 187 (876)
.|.|+|++|+||||||+++.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48899999999999999987632221 234555553
No 156
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.29 E-value=0.019 Score=63.94 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=27.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccC--CeEEEEEeC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNF--EKVIWVCVS 190 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs 190 (876)
...+.|+|..|+|||+||+++++ .+.... ..+++++..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH
Confidence 45688999999999999999998 444333 245566544
No 157
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.016 Score=67.08 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=79.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc--------------------ccCCe
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK--------------------RNFEK 183 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 183 (876)
.+++|.+.-++.+...+.... -.+.+-++|..|+||||+|+.+.+.---. .++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 479999988888888876431 23567799999999999998876531100 12222
Q ss_pred EEEEEeCCch---hHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHhh-CC
Q 042981 184 VIWVCVSDTF---EEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARMM-GS 248 (876)
Q Consensus 184 ~~wv~vs~~~---~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~-~~ 248 (876)
+.+...... +++++...+-.. +|++..-+....+.+...+........+|++| ....+.... ..
T Consensus 91 -~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 91 -FEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred -eeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 222222222 223333222111 78886655556777887777665566666554 444554332 23
Q ss_pred cceEeCCCCCcccc
Q 042981 249 TNIIFIEQLTEEES 262 (876)
Q Consensus 249 ~~~~~l~~L~~~~~ 262 (876)
...+++++++.++.
T Consensus 170 c~~~~f~~l~~~~i 183 (576)
T PRK14965 170 CQRFDFRRIPLQKI 183 (576)
T ss_pred hhhhhcCCCCHHHH
Confidence 56778888887665
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.27 E-value=0.013 Score=53.47 Aligned_cols=21 Identities=48% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|-|+|..|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 159
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0081 Score=60.66 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=33.8
Q ss_pred ccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 129 RVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 129 r~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+++..
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5566777777776533 23678999999999999999999987
No 160
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.25 E-value=0.036 Score=60.94 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=82.4
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch----hHHHHHHHHHHh---------ccccccCCccChhh
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF----EEIRVANAIIEG---------LDDVWDGDYNKWEP 219 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~----~~~~~~~~i~~~---------lDdvw~~~~~~~~~ 219 (876)
++.|.|+-++||||+++.+... ..+. .+++...+.. ...+.++..... ||.|-.. ..|+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~ 111 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWER 111 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHH
Confidence 9999999999999999766652 2222 4555433321 222222222221 8888654 58999
Q ss_pred HHhhhccCCCCCEEEEEcCchHHHHh------hCCcceEeCCCCCccccc-cCCCcCCccchHHHHHHHHHHcCCCchHH
Q 042981 220 FFHCLKHGLHGSKILLTTRNESVARM------MGSTNIIFIEQLTEEESF-SGRSFEDCEKLEPIGRKIARKCKGLPLAA 292 (876)
Q Consensus 220 l~~~l~~~~~gs~iivTTR~~~v~~~------~~~~~~~~l~~L~~~~~~-f~~~~~~~~~l~~~~~~i~~~c~GlPlai 292 (876)
....+.+.++. +|++|+-+..+... .|....+++-||+..|.+ +.......... ...-+-.-..||.|-++
T Consensus 112 ~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~~~-~~~f~~Yl~~GGfP~~v 189 (398)
T COG1373 112 ALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPSKL-ELLFEKYLETGGFPESV 189 (398)
T ss_pred HHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchhHH-HHHHHHHHHhCCCcHHH
Confidence 88888887666 89999887655432 234678899999988872 21111011111 22333444688999887
Q ss_pred HHhh
Q 042981 293 KATG 296 (876)
Q Consensus 293 ~~~~ 296 (876)
..-.
T Consensus 190 ~~~~ 193 (398)
T COG1373 190 KADL 193 (398)
T ss_pred hCcc
Confidence 6543
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=96.25 E-value=0.024 Score=59.38 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=30.6
Q ss_pred ceeeccchHHHHHHHh---hcc-----CC-cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKL---LFE-----SS-EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L---~~~-----~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++|.++.+++|.++. ... .. .....-..+.++|.+|+||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5778776666554432 111 00 0011223477899999999999999976
No 162
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.0023 Score=37.63 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=14.0
Q ss_pred ccCeeeccCccccccchhhcc
Q 042981 529 HLKYLNLSELCIERLPKTLCE 549 (876)
Q Consensus 529 ~Lr~L~Ls~~~i~~lp~~i~~ 549 (876)
+|++|+|++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 163
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.22 E-value=0.0029 Score=70.24 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=40.0
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++|.++.+++|++.|..........-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999999433211133557999999999999999999986
No 164
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0034 Score=70.54 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=44.7
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF 181 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (876)
+.+-+|.++-+++|++.|....-...-.-+++++||++|||||.|++.|++ ...+.|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 456799999999999999653221122347999999999999999999997 566666
No 165
>PRK08181 transposase; Validated
Probab=96.17 E-value=0.006 Score=62.78 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=48.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh----------HHHHHHHHHHh----ccccccCCccCh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE----------EIRVANAIIEG----LDDVWDGDYNKW 217 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~----------~~~~~~~i~~~----lDdvw~~~~~~~ 217 (876)
.-+.|+|..|+|||.||.++.+ ........+.|+++.+-++ ..+.++.+.+. |||+-......|
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHH
Confidence 3488999999999999999987 3333334556766543222 11222222222 898854433333
Q ss_pred h--hHHhhhccC-CCCCEEEEEcCch
Q 042981 218 E--PFFHCLKHG-LHGSKILLTTRNE 240 (876)
Q Consensus 218 ~--~l~~~l~~~-~~gs~iivTTR~~ 240 (876)
. .+...+... ..+ .+||||...
T Consensus 185 ~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 185 ETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 2 244444321 224 588888753
No 166
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.16 E-value=0.032 Score=62.22 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=26.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV 189 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (876)
..-+.|+|..|+|||+||+++.+ .+...--.+++++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~ 177 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS 177 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH
Confidence 45688999999999999999998 34333234455554
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.035 Score=59.17 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=89.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccc-------------------cccCCeEEEEEeC---CchhH---HHHHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEV-------------------KRNFEKVIWVCVS---DTFEE---IRVANAIIE 204 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs---~~~~~---~~~~~~i~~ 204 (876)
-..-+-++|+.|+||||+|+.+.+.--- .+..+-..|+.-. +...+ +++.+.+..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3466789999999999999877652110 0112334455322 22333 333333322
Q ss_pred h----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEeCCCCCcccc--ccCCCcCC
Q 042981 205 G----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIFIEQLTEEES--FSGRSFED 270 (876)
Q Consensus 205 ~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~--~f~~~~~~ 270 (876)
. +|++..-+.+..+.+...+-....++.+|+||.+. .+... .+....+.+.+++.++. +.....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-- 178 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-- 178 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc--
Confidence 1 88887777778888888888776778888888775 34333 33467899999999888 222111
Q ss_pred ccchHHHHHHHHHHcCCCchHHHHh
Q 042981 271 CEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 271 ~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
...-.+-+..++..++|.|..+..+
T Consensus 179 ~~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 179 PESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ccCChHHHHHHHHHcCCCHHHHHHH
Confidence 0112334567789999999766554
No 168
>PRK12377 putative replication protein; Provisional
Probab=96.09 E-value=0.0077 Score=61.17 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=50.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHH-------HHHHHHHh--------ccccccCCcc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR-------VANAIIEG--------LDDVWDGDYN 215 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~-------~~~~i~~~--------lDdvw~~~~~ 215 (876)
...+.|+|..|+|||+||.++.+ .+......++++++.+-..... ...++++. |||+-.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 35789999999999999999998 4444444567777654332111 11223332 8998544334
Q ss_pred Chhh--HHhhhccC-CCCCEEEEEcC
Q 042981 216 KWEP--FFHCLKHG-LHGSKILLTTR 238 (876)
Q Consensus 216 ~~~~--l~~~l~~~-~~gs~iivTTR 238 (876)
.|.. +...+... ...--+||||-
T Consensus 179 ~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 179 KNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5543 33333321 12233677775
No 169
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.0035 Score=61.92 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred CcccCeeeccCccccccchhhccCCcccEEeecCC--CCCccccccccCcCCCceEecCCCCC
Q 042981 527 LIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWC--EDLRELPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~ 587 (876)
+..|++|++.+..++++- .+-.|++|++|.++.| +....++.-..++++|++|++++|++
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344555555555444331 2334778888888777 44455555556668888888888854
No 170
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.08 E-value=0.0067 Score=64.13 Aligned_cols=200 Identities=23% Similarity=0.246 Sum_probs=114.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCC-eEEEEEeCCchhHH----------------------HHHHHHHHh-
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEI----------------------RVANAIIEG- 205 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~----------------------~~~~~i~~~- 205 (876)
..|-+.++|.|||||||++-++.. +...|. .+++|....--|.. .+...+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 568899999999999999988875 555664 33344322211111 112222211
Q ss_pred ----ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHHHHhhCCcceEeCCCCCcccc---ccCC-------CcCCc
Q 042981 206 ----LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVARMMGSTNIIFIEQLTEEES---FSGR-------SFEDC 271 (876)
Q Consensus 206 ----lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~---~f~~-------~~~~~ 271 (876)
+|+.-.- .+.-..+...+-.+...-.|+.|+|..... ..+..+.+.+|+..+. .|-. .+...
T Consensus 90 ~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 90 ALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 4443111 011112233344444455677887754322 2356788888887762 2211 11122
Q ss_pred cchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhccccc-------cCCcchhhHhhcccCCCCchhHH
Q 042981 272 EKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWKVEE-------IGQGLFAPLLLSYNDLPSNSMVK 344 (876)
Q Consensus 272 ~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~~lk 344 (876)
..-......|.++..|.|++|...++..+.-.. .+--.-++.....+.+ -.....+.+.+||.-|.. ..+
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg--we~ 242 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG--WER 242 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh--HHH
Confidence 334567889999999999999999998876531 2222222211111111 124567789999999988 677
Q ss_pred HHHhHhccCCCCcee
Q 042981 345 RCFSYCAIFPKEYNI 359 (876)
Q Consensus 345 ~cfly~~~fp~~~~i 359 (876)
--|--++.|...+.-
T Consensus 243 ~~~~rLa~~~g~f~~ 257 (414)
T COG3903 243 ALFGRLAVFVGGFDL 257 (414)
T ss_pred HHhcchhhhhhhhcc
Confidence 778777777665543
No 171
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.05 E-value=0.03 Score=63.22 Aligned_cols=108 Identities=23% Similarity=0.221 Sum_probs=59.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCC--eEEEEEeCCchhHHHHHHH--------H---HHh-----ccccccC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVANA--------I---IEG-----LDDVWDG 212 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~--------i---~~~-----lDdvw~~ 212 (876)
..-+.|+|..|+|||+||+++.+ .+...+. .+++++..+-. .++... . +.. |||+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l 223 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSEKFT--NDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFL 223 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHHHHH--HHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhh
Confidence 45688999999999999999998 4544442 34566544311 111111 1 111 7888543
Q ss_pred CccC-h-hhHHhhhcc-CCCCCEEEEEcCch--H-------HHHhhCCcceEeCCCCCcccc
Q 042981 213 DYNK-W-EPFFHCLKH-GLHGSKILLTTRNE--S-------VARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 213 ~~~~-~-~~l~~~l~~-~~~gs~iivTTR~~--~-------v~~~~~~~~~~~l~~L~~~~~ 262 (876)
.... + +.+...+.. ...|..||+||... . +...+.....+++++.+.++-
T Consensus 224 ~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 224 AGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 2111 2 233332221 12355688887643 1 222333445778888777665
No 172
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.03 E-value=0.01 Score=60.19 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=50.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh------------HHHHHHHHHHh----ccccccCCc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE------------EIRVANAIIEG----LDDVWDGDY 214 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~------------~~~~~~~i~~~----lDdvw~~~~ 214 (876)
...+.++|.+|+|||+||.++.+. +...-..++++++++-.. ..++.+.+... +||+-....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE 176 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC
Confidence 357889999999999999999983 333334567777655332 11222222211 899876555
Q ss_pred cChhh--HHhhhcc-CCCCCEEEEEcCc
Q 042981 215 NKWEP--FFHCLKH-GLHGSKILLTTRN 239 (876)
Q Consensus 215 ~~~~~--l~~~l~~-~~~gs~iivTTR~ 239 (876)
.+|+. +...+.. -...-.+||||-.
T Consensus 177 s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 177 SRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 56664 3333322 1122347777753
No 173
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.03 E-value=0.047 Score=62.64 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------cccCCe
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV--------------------KRNFEK 183 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~ 183 (876)
.+++|-+..++.+..++... .-.+.+-++|..|+||||+|+.+.+.--. ..+++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 46999999999998888643 23456889999999999999988763111 113332
Q ss_pred EEEEEeCCchhHHHH---HHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCC
Q 042981 184 VIWVCVSDTFEEIRV---ANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGS 248 (876)
Q Consensus 184 ~~wv~vs~~~~~~~~---~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~ 248 (876)
+++..........+ ...+... +|++..-+...++.+...+........+|++|.. ..+... ...
T Consensus 91 -~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 91 -IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred -EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh
Confidence 33332222222222 2222211 7887665555677788777766666777666543 344332 223
Q ss_pred cceEeCCCCCcccc
Q 042981 249 TNIIFIEQLTEEES 262 (876)
Q Consensus 249 ~~~~~l~~L~~~~~ 262 (876)
...++..+++.++-
T Consensus 170 c~~~~f~~l~~~el 183 (563)
T PRK06647 170 CQHFNFRLLSLEKI 183 (563)
T ss_pred ceEEEecCCCHHHH
Confidence 45788888877664
No 174
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.03 E-value=0.018 Score=60.33 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-+.++|.+|+||||+|+.+++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 477999999999999977765
No 175
>PRK09183 transposase/IS protein; Provisional
Probab=95.99 E-value=0.0095 Score=61.39 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+.|+|..|+|||+||.++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4577999999999999999976
No 176
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.99 E-value=0.0043 Score=57.30 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=59.2
Q ss_pred eeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-cccCCeEEEEEeCCchhHHHHHHHHHHh
Q 042981 127 CGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEIRVANAIIEG 205 (876)
Q Consensus 127 vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 205 (876)
||....++++.+.+..-.. .-..|-|.|..|+||+++|+.++....- ...|..+ .... .+ .++++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----HHHHHH
Confidence 5677777777777765322 2345689999999999999999974322 1223221 1111 11 233333
Q ss_pred -------ccccccCCccChhhHHhhhccC-CCCCEEEEEcCch
Q 042981 206 -------LDDVWDGDYNKWEPFFHCLKHG-LHGSKILLTTRNE 240 (876)
Q Consensus 206 -------lDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTTR~~ 240 (876)
++++..-+.+....+...+... ....|+|.||+..
T Consensus 68 a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 6777555545556676666643 5678999998754
No 177
>PRK06921 hypothetical protein; Provisional
Probab=95.98 E-value=0.013 Score=60.51 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=29.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc-CCeEEEEEeCC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRN-FEKVIWVCVSD 191 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~ 191 (876)
...+.++|..|+|||+||.++.+ .+... -..+++++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEHHH
Confidence 45689999999999999999998 44333 34566777544
No 178
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.94 E-value=0.017 Score=60.95 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=60.4
Q ss_pred eccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHH------HHHH
Q 042981 128 GRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR------VANA 201 (876)
Q Consensus 128 Gr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~------~~~~ 201 (876)
++....+...+++..-.. ....+-+.|+|..|+|||.||.++++. +...=..+.+++++.-+..-+ -...
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~ 210 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFPEFIRELKNSISDGSVKE 210 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHHHHHHHHHHHHhcCcHHH
Confidence 344444445555543221 123467889999999999999999984 333223456776653211110 0112
Q ss_pred HHHh--------ccccccCCccChhh--HHhhh-ccC-CCCCEEEEEcCc
Q 042981 202 IIEG--------LDDVWDGDYNKWEP--FFHCL-KHG-LHGSKILLTTRN 239 (876)
Q Consensus 202 i~~~--------lDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTTR~ 239 (876)
.++. |||+-.+....|.. +...+ ... ..+-.+|+||--
T Consensus 211 ~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 211 KIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2222 89997666667864 54444 221 234568888763
No 179
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.92 E-value=0.088 Score=54.19 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=88.7
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccc-----ccCCeEEEEEeCCchhHHHHHHHHHHh-
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVK-----RNFEKVIWVCVSDTFEEIRVANAIIEG- 205 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~- 205 (876)
..+++.++|..+. .....-+.|||-.|.|||+++++..+..-.. ..+ .++.|.....++..++...|+.+
T Consensus 45 ~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 45 ALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHh
Confidence 4455555555443 3466779999999999999999988642211 111 46667777888999999888887
Q ss_pred ------------------------------ccccccC---CccChhhHHhhhc---cCCCCCEEEEEcCchHHHHhh---
Q 042981 206 ------------------------------LDDVWDG---DYNKWEPFFHCLK---HGLHGSKILLTTRNESVARMM--- 246 (876)
Q Consensus 206 ------------------------------lDdvw~~---~~~~~~~l~~~l~---~~~~gs~iivTTR~~~v~~~~--- 246 (876)
+|.+.+- ...+-..+...++ +.-.=+-|.|-|+..--|-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 5666431 1112222333332 222234455555433222111
Q ss_pred --CCcceEeCCCCCcccc------ccCC----CcCCccchHHHHHHHHHHcCCCc
Q 042981 247 --GSTNIIFIEQLTEEES------FSGR----SFEDCEKLEPIGRKIARKCKGLP 289 (876)
Q Consensus 247 --~~~~~~~l~~L~~~~~------~f~~----~~~~~~~l~~~~~~i~~~c~GlP 289 (876)
+...++.+..-..++. .|.. .....-...++++.|...++|+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 1234666666666554 1211 11222345678999999999976
No 180
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.062 Score=61.87 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=78.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------cccCCe
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV--------------------KRNFEK 183 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~ 183 (876)
.+++|.+..++.+..++.... -.+.+-++|..|+||||+|+.+.+.--. ..++|
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d- 89 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD- 89 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-
Confidence 579999998998888887532 3466778999999999999887652110 11333
Q ss_pred EEEEEeCCchh---HHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEc-CchHHHHh-hCC
Q 042981 184 VIWVCVSDTFE---EIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTT-RNESVARM-MGS 248 (876)
Q Consensus 184 ~~wv~vs~~~~---~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~-~~~ 248 (876)
++.+..+.... ++.+...+... +|++..-....+..+...+........+|++| ....+... .+.
T Consensus 90 v~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 90 VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred eEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 23333332222 22333332211 78876555556777777776655555555544 44333322 223
Q ss_pred cceEeCCCCCcccc
Q 042981 249 TNIIFIEQLTEEES 262 (876)
Q Consensus 249 ~~~~~l~~L~~~~~ 262 (876)
...++..+++.++.
T Consensus 170 c~~~~f~~~~~~ei 183 (559)
T PRK05563 170 CQRFDFKRISVEDI 183 (559)
T ss_pred heEEecCCCCHHHH
Confidence 45677777776665
No 181
>PRK07667 uridine kinase; Provisional
Probab=95.86 E-value=0.016 Score=57.00 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 133 KNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 133 ~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.|.+.+.... ++..+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456676665543 3558999999999999999999987
No 182
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.064 Score=61.12 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=61.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccC--CeEEEEEeCCchhH--HH-------HHHHHHHh-----ccccccCCc-
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEE--IR-------VANAIIEG-----LDDVWDGDY- 214 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~--~~-------~~~~i~~~-----lDdvw~~~~- 214 (876)
..+.|+|..|+|||.|++++++ .....+ -.+++++..+-.+. .. .+++-+.. |||+.....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 4589999999999999999998 444333 24456665431110 00 11111112 888865422
Q ss_pred cChhh-HHhhhcc-CCCCCEEEEEcCch---------HHHHhhCCcceEeCCCCCcccc
Q 042981 215 NKWEP-FFHCLKH-GLHGSKILLTTRNE---------SVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 215 ~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+.|.. +...+.. ...|..|||||+.. .+...+...-++++++.+.+.-
T Consensus 393 e~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 393 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 23332 3333322 12356788888752 2333444567888888887765
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.009 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccccc-CCeEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRN-FEKVIW 186 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~w 186 (876)
--|.|.||+|+||||+++.+.+ .++.. |...-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf 39 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGF 39 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeE
Confidence 4579999999999999999997 44443 654433
No 184
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.70 E-value=0.014 Score=62.07 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=50.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHH------------HHHHHHHh----ccccccCCcc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR------------VANAIIEG----LDDVWDGDYN 215 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~------------~~~~i~~~----lDdvw~~~~~ 215 (876)
.-+.++|..|+|||+||.++.+ .+.+.-..++++++.+-++.-. ....+.+. |||+-.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCC
Confidence 5689999999999999999998 3333323567777655333111 11222221 8998655434
Q ss_pred Chhh--HHhhhccC-CCCCEEEEEcCc
Q 042981 216 KWEP--FFHCLKHG-LHGSKILLTTRN 239 (876)
Q Consensus 216 ~~~~--l~~~l~~~-~~gs~iivTTR~ 239 (876)
.|.. +...+... ..+-.+||||..
T Consensus 262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 262 EFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4432 33333321 235568888864
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.65 E-value=0.034 Score=66.65 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=61.0
Q ss_pred CceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch-------
Q 042981 124 GEVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF------- 193 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------- 193 (876)
..++|.+..++.+.+.+..... ..+....++-++|+.|+|||+||+.++. .. +...+.+..++-.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcccHHH
Confidence 3578999888988888764211 0012345788999999999999999987 23 2223444433311
Q ss_pred -----------hHHHHHHHHHHh-------ccccccCCccChhhHHhhhccC
Q 042981 194 -----------EEIRVANAIIEG-------LDDVWDGDYNKWEPFFHCLKHG 227 (876)
Q Consensus 194 -----------~~~~~~~~i~~~-------lDdvw~~~~~~~~~l~~~l~~~ 227 (876)
+....+...++. ||++..-..+.++.+...+..+
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 111122222222 8888877767777777776654
No 186
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.0015 Score=64.63 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccc
Q 042981 465 LNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLP 544 (876)
Q Consensus 465 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp 544 (876)
+.+.+.|++.++. ..+ -.+..+++.|+||.| +-|.|..+ ..+..+..|+.|.|+.|.|..+-
T Consensus 18 l~~vkKLNcwg~~------L~D--Isic~kMp~lEVLsL---------SvNkIssL-~pl~rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCG------LDD--ISICEKMPLLEVLSL---------SVNKISSL-APLQRCTRLKELYLRKNCIESLD 79 (388)
T ss_pred HHHhhhhcccCCC------ccH--HHHHHhcccceeEEe---------eccccccc-hhHHHHHHHHHHHHHhcccccHH
Confidence 3455556665544 111 123567777777777 55555554 33566777777777777776554
Q ss_pred h--hhccCCcccEEeecCCCCCccccc-----cccCcCCCceEe
Q 042981 545 K--TLCELYNLQKLDIRWCEDLRELPA-----GIGKLKKMRSLL 581 (876)
Q Consensus 545 ~--~i~~L~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 581 (876)
+ .+.+|++|++|-|..|.-.+.-+. .+.-|++|+.||
T Consensus 80 EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 80 ELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3 355677777777766644333322 134556666654
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.066 Score=57.48 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=79.1
Q ss_pred ceee-ccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------cccCCe
Q 042981 125 EVCG-RVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV--------------------KRNFEK 183 (876)
Q Consensus 125 ~~vG-r~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~ 183 (876)
.++| -+..++.+...+... .-....-++|..|+||||+|+.+.+.--- ..|-|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 555666666666432 23467789999999999999887542100 012232
Q ss_pred EEEEEe-CCchhHHHH---HHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHhh-C
Q 042981 184 VIWVCV-SDTFEEIRV---ANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARMM-G 247 (876)
Q Consensus 184 ~~wv~v-s~~~~~~~~---~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~ 247 (876)
.++.. +....+..+ ...+-.. +|++..-+.+..+.++..+.....++.+|++|.+. .+.... +
T Consensus 81 -~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 81 -HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred -EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 23322 222333222 2222211 77776555556777888888877788888888654 333322 3
Q ss_pred CcceEeCCCCCcccc
Q 042981 248 STNIIFIEQLTEEES 262 (876)
Q Consensus 248 ~~~~~~l~~L~~~~~ 262 (876)
....+++.+++.++.
T Consensus 160 Rc~~i~~~~~~~~~~ 174 (329)
T PRK08058 160 RCQVVEFRPLPPESL 174 (329)
T ss_pred hceeeeCCCCCHHHH
Confidence 467899999998887
No 188
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.63 E-value=0.033 Score=67.31 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=38.2
Q ss_pred CceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.|.+.+..... .......++.++|+.|+|||.||+++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998864211 0123456889999999999999988765
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.61 E-value=0.032 Score=67.72 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=38.0
Q ss_pred CceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.+...+..... ..+....++.++|..|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999888865321 0012235788999999999999999986
No 190
>PTZ00301 uridine kinase; Provisional
Probab=95.61 E-value=0.012 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999999876
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.59 E-value=0.011 Score=56.92 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=45.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh----------HHHHHHHHHHh----ccccccCCccC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE----------EIRVANAIIEG----LDDVWDGDYNK 216 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~----------~~~~~~~i~~~----lDdvw~~~~~~ 216 (876)
-.-+.|+|..|+|||.||.++.+. ...+=-.+.|+.+++-++ ..+..+.+... |||+-.....+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~ 124 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSE 124 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---H
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecc
Confidence 356899999999999999999873 222222456776553222 12233333333 89986554344
Q ss_pred hhh--HHhhhccC-CCCCEEEEEcCch
Q 042981 217 WEP--FFHCLKHG-LHGSKILLTTRNE 240 (876)
Q Consensus 217 ~~~--l~~~l~~~-~~gs~iivTTR~~ 240 (876)
|.. +...+... .++ .+||||.-.
T Consensus 125 ~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 125 WEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp HHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cccccchhhhhHhhccc-CeEeeCCCc
Confidence 432 22222211 123 588888743
No 192
>PRK06526 transposase; Provisional
Probab=95.55 E-value=0.01 Score=60.79 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-+.|+|.+|+|||+||.++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4578999999999999999876
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.078 Score=56.24 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=96.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc---c---------c-cccCCeEEEEEeC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND---E---------V-KRNFEKVIWVCVS 190 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~---------~-~~~F~~~~wv~vs 190 (876)
.+++|.+..++.+...+..+. -....-++|..|+||+++|..+.+.- . + ...++-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999988886532 24788999999999999887765421 0 0 1223344555421
Q ss_pred -----Cc------------------hhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEE
Q 042981 191 -----DT------------------FEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKI 233 (876)
Q Consensus 191 -----~~------------------~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~i 233 (876)
+. ..+. -.++|.+. +|++..-+....+.++..+-... ...+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 10 0011 12334332 67776555567777888876655 4455
Q ss_pred EEEcCc-hHHHHh-hCCcceEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 234 LLTTRN-ESVARM-MGSTNIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 234 ivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
|++|.+ ..+... .+....+++.++++++. +...... .......-..++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~-~~~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD-EEILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc-cccchhHHHHHHHHcCCCHHHHHHH
Confidence 555544 444433 23467999999999887 2221111 0111111357889999999765543
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.50 E-value=0.015 Score=56.41 Aligned_cols=36 Identities=39% Similarity=0.632 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEE
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWV 187 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (876)
...+|.|+|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 457999999999999999999997 565566666555
No 195
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.49 E-value=0.054 Score=53.86 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=58.3
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC--chhHHHHH
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVA 199 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~ 199 (876)
.-++++|.+..++.+++-...=-. .....-+-+||..|.|||++++++.+. .... ..--|.|.+ -.+..++.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~--GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQ--GLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--Hhhc--CceEEEECHHHhccHHHHH
Confidence 446799999999988864432111 112344667999999999999999872 2211 111233333 23445555
Q ss_pred HHHHHh-------ccccccC-CccChhhHHhhhcc
Q 042981 200 NAIIEG-------LDDVWDG-DYNKWEPFFHCLKH 226 (876)
Q Consensus 200 ~~i~~~-------lDdvw~~-~~~~~~~l~~~l~~ 226 (876)
..+-.. +||.--+ +......++..+..
T Consensus 99 ~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 99 DLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred HHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 544433 7887533 23345566666654
No 196
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.029 Score=65.17 Aligned_cols=109 Identities=18% Similarity=0.324 Sum_probs=70.2
Q ss_pred CceeeccchHHHHHHHhhccCCc---CCCCeEEEEEEecCCchHHHHHHHHHcCccccccC---CeEEEEEeCCchhHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE---QQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEEIR 197 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 197 (876)
..++|.+..++.|.+.+...... .+....+.-.+|+.|||||-||+++.. .-| +..+-+..|+ |..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSE-y~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSE-YMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHH-HHHHH
Confidence 46899999999999888653221 134567888899999999999998875 234 3334444444 32222
Q ss_pred HHHHHHHh--------------------------ccccccCCccChhhHHhhhccCC----C-------CCEEEEEcC
Q 042981 198 VANAIIEG--------------------------LDDVWDGDYNKWEPFFHCLKHGL----H-------GSKILLTTR 238 (876)
Q Consensus 198 ~~~~i~~~--------------------------lDdvw~~~~~~~~~l~~~l~~~~----~-------gs~iivTTR 238 (876)
-...++-. ||.|-.-..+..+.+...|.+|. . .+-||+||-
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 22222222 88887766667777788877652 2 355666664
No 197
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.43 E-value=0.011 Score=58.55 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=25.3
Q ss_pred ccccceeeeccCccC--CCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEcc
Q 042981 805 MPRLSSLTIWYCPRL--RVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEY 867 (876)
Q Consensus 805 l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~ 867 (876)
+|+|++|++++|++- .+++ .+..+.+|..|++.+|.... +..-....+.-+|+|+.|+-.+
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred CCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 355555555555321 1222 12334445555555554332 1111112334455555554443
No 198
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.42 E-value=0.02 Score=68.93 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=38.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.+++|.+++..........-+++.++|++|+|||++|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999876532110012335899999999999999999997
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.41 E-value=0.021 Score=55.85 Aligned_cols=53 Identities=26% Similarity=0.286 Sum_probs=34.6
Q ss_pred eccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEE
Q 042981 128 GRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVC 188 (876)
Q Consensus 128 Gr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (876)
.+..+....++.|. ...++.+.|.+|.|||.||-+..-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34556666777776 235889999999999999977765433457788887774
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.41 E-value=0.046 Score=66.63 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=68.6
Q ss_pred CceeeccchHHHHHHHhhccCCc---CCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh---HH-
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE---QQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE---EI- 196 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~- 196 (876)
..++|.+..++.+.+.+...... .+....++.++|..|+|||++|+.+... ....-...+.+..+.-.+ ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchHHH
Confidence 45899999999999988753210 0123467889999999999999999862 211112223333332111 11
Q ss_pred ---------------HHHHHHHHh------ccccccCCccChhhHHhhhccCC-----------CCCEEEEEcCc
Q 042981 197 ---------------RVANAIIEG------LDDVWDGDYNKWEPFFHCLKHGL-----------HGSKILLTTRN 239 (876)
Q Consensus 197 ---------------~~~~~i~~~------lDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 239 (876)
.+...+-.. ||++..-..+.+..+...+..+. ..+-||+||..
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred hcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 122222211 89987777777888888775542 23447777754
No 201
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.019 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.+|||-|.+|.||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999999997
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.22 Score=52.69 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=95.0
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc-----Cccc-------------cccCCeEEEEEe---C
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN-----NDEV-------------KRNFEKVIWVCV---S 190 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~-----~~~~-------------~~~F~~~~wv~v---s 190 (876)
..+++...+..+ .-...+-++|..|+||+++|+.+.+ ++.. ....+-..||.- +
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 445566555432 2346788999999999999988754 1110 112223445542 2
Q ss_pred CchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEeC
Q 042981 191 DTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIFI 254 (876)
Q Consensus 191 ~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l 254 (876)
+...+..+ +.+.+. +|++..-+.+.++.+...+-....++.+|++|.+. .+... .+....+.+
T Consensus 86 ~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 86 KSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred CcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 23444433 233222 78877666678888988888877788887777664 44433 345678999
Q ss_pred CCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 255 EQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 255 ~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
.+++.++. +...... + .+..+++.++|.|+.+..+.
T Consensus 165 ~~~~~~~~~~~L~~~~~--~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 165 TPPSTAQAMQWLKGQGI--T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred CCCCHHHHHHHHHHcCC--c----hHHHHHHHcCCCHHHHHHHh
Confidence 99998887 2222111 1 23567899999999776553
No 203
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.32 E-value=0.012 Score=57.88 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 204
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.11 Score=54.10 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=37.1
Q ss_pred CceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++=|.++.+++|.+...-+--. +-..++=|-++|++|.|||-||++|++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45667888888888766432110 1234577889999999999999999984
No 205
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.30 E-value=0.041 Score=57.45 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHH
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAI 202 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 202 (876)
++.+.+|+.+.+.+...+...+. .-+..|-|.|..|.|||.+.+++++.. .. ..+|+++-+.|..+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 56788999999999988765432 234566899999999999999999843 22 35899999999999999999
Q ss_pred HHhc
Q 042981 203 IEGL 206 (876)
Q Consensus 203 ~~~l 206 (876)
+.++
T Consensus 77 L~~~ 80 (438)
T KOG2543|consen 77 LNKS 80 (438)
T ss_pred HHHh
Confidence 8874
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.27 E-value=0.061 Score=55.75 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-|-+.|.+|+|||++|+++.+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999986
No 207
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.21 E-value=0.071 Score=49.01 Aligned_cols=108 Identities=16% Similarity=0.257 Sum_probs=68.5
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHhccccccCC-ccChhhHHhhhccCCCCC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEGLDDVWDGD-YNKWEPFFHCLKHGLHGS 231 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~lDdvw~~~-~~~~~~l~~~l~~~~~gs 231 (876)
-+.|||-||+||+++.+..|.. -..+.+...+||..-. +.+.-.+=..---.|+.. .++.+.+-.+.-.+...|
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfle----rqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLE----RQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhhhh----HHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 3569999999999999999962 1234456788886433 221111100011236542 356677777777788888
Q ss_pred EEEEEcCchHHHHhhCCcceEeCCCCCccccccCCCcCCccchHHHHHHHHHHcCCCchHHH
Q 042981 232 KILLTTRNESVARMMGSTNIIFIEQLTEEESFSGRSFEDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 232 ~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
..+..|-++.--+ ...+.-++|.+.|+-.|+.++
T Consensus 97 vLVFSTTDr~SFe----------------------------a~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 97 VLVFSTTDRYSFE----------------------------ATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred EEEEecccHHHHH----------------------------HHHHHHHHHHHHhccCCeEEe
Confidence 7777776653222 245667889999999998653
No 208
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.20 E-value=0.016 Score=58.00 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+..+|+|.|..|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 209
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.15 E-value=0.015 Score=52.88 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|.|..|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 210
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.039 Score=61.69 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=28.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccC-C-eEEEEEeCC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSD 191 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~ 191 (876)
..-+.|+|..|+|||+||+++++ .+.... . .++|++..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHHH
Confidence 34589999999999999999998 444433 3 456666543
No 211
>PRK08233 hypothetical protein; Provisional
Probab=95.14 E-value=0.016 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999986
No 212
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.13 E-value=0.064 Score=57.47 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=37.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|....++++++.+..... .-.-|-|+|-.|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999988876542 223467999999999999999986
No 213
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.07 E-value=0.018 Score=57.45 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|+|+|..|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 214
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.0015 Score=64.59 Aligned_cols=104 Identities=22% Similarity=0.224 Sum_probs=77.0
Q ss_pred ccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccc--c
Q 042981 493 SKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPA--G 570 (876)
Q Consensus 493 ~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~ 570 (876)
+.+.+.+.|++ .+|.+..|. -+..|+.|++|.||-|.|++|-+ +..+++|+.|.|+.| .+..+-. -
T Consensus 16 sdl~~vkKLNc---------wg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~Y 83 (388)
T KOG2123|consen 16 SDLENVKKLNC---------WGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEY 83 (388)
T ss_pred hHHHHhhhhcc---------cCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHH
Confidence 34667788888 777776652 23679999999999999999854 889999999999998 4544432 3
Q ss_pred ccCcCCCceEecCCCCCCccCCcc-----CCCCCCCCccCcee
Q 042981 571 IGKLKKMRSLLNGGTPLLKYMPIG-----ISKLTSLRTLEKFA 608 (876)
Q Consensus 571 i~~L~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~ 608 (876)
+.++++|+.|-|..|+-.+.-+.. +.-|++|+.|+...
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 578999999999888766655432 34567777775443
No 215
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0015 Score=61.72 Aligned_cols=88 Identities=18% Similarity=0.380 Sum_probs=62.3
Q ss_pred cccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCC-CCCCCCCCCccEEEEecCCCchhhcccc
Q 042981 772 VIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVL-PDYLFQSTTLQKLSISYCPIMEELRILE 850 (876)
Q Consensus 772 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~~~ 850 (876)
+..+++++.|.+.+|..+.+|.+... .+..|+|+.|+|++|+.+++- -.++..+++|+.|.|++-+.+.......
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e~~~ 196 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLELVQ 196 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchHHHH
Confidence 44688999999999999999987332 236899999999999988733 3456778999999999877654432221
Q ss_pred ccCCCCCCCcCEE
Q 042981 851 DHRTTDIPRLSSL 863 (876)
Q Consensus 851 ~~~~~~lp~L~~L 863 (876)
...-..||+++..
T Consensus 197 ~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 197 RQLEEALPKCDIV 209 (221)
T ss_pred HHHHHhCccccee
Confidence 1122456665443
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.94 E-value=0.019 Score=69.65 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=36.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHH
Confidence 358999999999999997542 22345999999999999999877
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.21 Score=52.86 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=91.7
Q ss_pred chHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc-----cc-----------cccCCeEEEEEe--CC-
Q 042981 131 DEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND-----EV-----------KRNFEKVIWVCV--SD- 191 (876)
Q Consensus 131 ~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----~~-----------~~~F~~~~wv~v--s~- 191 (876)
...+.+...+..+ .-..-+-++|..|+||+|+|..+.+.- .. .....-..||.. ..
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 3455566555432 234578899999999999997765421 00 111233445521 11
Q ss_pred ------chhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCc
Q 042981 192 ------TFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGST 249 (876)
Q Consensus 192 ------~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~ 249 (876)
...++ -.+++.+. +|++..-+...-+.++..+-....++.+|++|.+. .+... .+..
T Consensus 86 ~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 86 GDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred cccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 11122 22333332 77776655556667888887777788887777753 44433 2346
Q ss_pred ceEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 250 NIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
..+.+.+++.++. +..... . -..-+..++..++|.|+.+..+.
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~-~---~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQG-V---SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcC-C---ChHHHHHHHHHcCCCHHHHHHHh
Confidence 7889999998887 222211 1 12235678999999998775544
No 218
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.86 E-value=0.019 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988863
No 219
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.86 E-value=0.015 Score=64.02 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++.|+++.++++.+.+...-.. +-...+-|-++|.+|+|||++|+++++
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 346889999999998876431100 012356688999999999999999998
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.14 Score=55.79 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=74.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe------CCch---hHHHHHHHHHHh------ccccccCCc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV------SDTF---EEIRVANAIIEG------LDDVWDGDY 214 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v------s~~~---~~~~~~~~i~~~------lDdvw~~~~ 214 (876)
.+..+-+.|++|+|||+||..+.. ...|+.+--++- |+.. .+++++.+-.+. +||+-.-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL-- 610 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL-- 610 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh--
Confidence 566777899999999999999985 456775544432 2211 223333333333 6776321
Q ss_pred cChh------------hHHhhhcc-CCCCCEE--EEEcCchHHHHhhCC----cceEeCCCCCcccc---ccCCCc-CCc
Q 042981 215 NKWE------------PFFHCLKH-GLHGSKI--LLTTRNESVARMMGS----TNIIFIEQLTEEES---FSGRSF-EDC 271 (876)
Q Consensus 215 ~~~~------------~l~~~l~~-~~~gs~i--ivTTR~~~v~~~~~~----~~~~~l~~L~~~~~---~f~~~~-~~~ 271 (876)
-+|- .+...+.. ..+|-|. +-||..+.|.+.|+- ...|.|+.++.-+- +....+ -..
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd 690 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSD 690 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCc
Confidence 1232 22223332 2346564 447778889998873 46888888887333 211111 223
Q ss_pred cchHHHHHHHHHHc
Q 042981 272 EKLEPIGRKIARKC 285 (876)
Q Consensus 272 ~~l~~~~~~i~~~c 285 (876)
.+...++++.+.+|
T Consensus 691 ~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 691 DEVRAIAEQLLSKK 704 (744)
T ss_pred chhHHHHHHHhccc
Confidence 44556667776666
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.83 E-value=0.071 Score=64.82 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=37.2
Q ss_pred CceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.|...+..... ..+....++-++|+.|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999888763211 0022345677899999999999998875
No 222
>PRK06547 hypothetical protein; Provisional
Probab=94.82 E-value=0.037 Score=53.02 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...+|+|.|..|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
No 223
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.79 E-value=0.12 Score=50.60 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=65.4
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHH
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 201 (876)
+-..++|.+..++.+++--..=.. .....-|-+||..|.||+.|+|++.+ .+.+..-..+=|+-.+-.+...+...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~~Lp~l~~~ 133 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLATLPDLVEL 133 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHhhHHHHHHH
Confidence 345799999888888764332110 11233467999999999999999998 55555444333332333333333333
Q ss_pred HHHh-------cccccc-CCccChhhHHhhhccC--CCCCEEEE-EcCc
Q 042981 202 IIEG-------LDDVWD-GDYNKWEPFFHCLKHG--LHGSKILL-TTRN 239 (876)
Q Consensus 202 i~~~-------lDdvw~-~~~~~~~~l~~~l~~~--~~gs~iiv-TTR~ 239 (876)
+-.. .||.-- ++......++.++..+ +...-||+ .|.+
T Consensus 134 Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 134 LRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 2222 688743 3344666677777654 23344444 3443
No 224
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.78 E-value=0.11 Score=51.22 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=28.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 201 (876)
++..|.|.+|.||||+++.+... .... ...+.+..........+.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh
Confidence 67888999999999999988762 2222 23444444444444444444
No 225
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.77 E-value=0.024 Score=68.47 Aligned_cols=44 Identities=30% Similarity=0.322 Sum_probs=36.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH
Confidence 468999999999999887542 23345999999999999999887
No 226
>PF14516 AAA_35: AAA-like domain
Probab=94.67 E-value=0.63 Score=50.04 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 191 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 191 (876)
.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+..+- ..+ .++++.+..
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~ 69 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQ 69 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeec
Confidence 344677886677777777643 257899999999999999888773222 233 344666544
No 227
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.67 E-value=0.037 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 228
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.67 E-value=0.027 Score=52.32 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999885
No 229
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.61 E-value=0.1 Score=55.85 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred eeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 126 VCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 126 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++|....++++.+.+..-.. .-.-|-|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777778888877765432 2234689999999999999999863
No 230
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.60 E-value=0.037 Score=60.99 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=35.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|+++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 358999999999988887543 377999999999999999987
No 231
>PRK06762 hypothetical protein; Provisional
Probab=94.59 E-value=0.026 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 232
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.57 E-value=0.02 Score=50.65 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNNDEVKRNFE 182 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 182 (876)
|-|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999997 5666664
No 233
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.56 E-value=0.033 Score=54.84 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=39.2
Q ss_pred CceeeccchHHH---HHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc
Q 042981 124 GEVCGRVDEKNE---LLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 124 ~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
+++||.++.+.+ |++.|...+.=++...+-|-.+|++|.|||.+|+++.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 578998877654 5556654332235678889999999999999999999843
No 234
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.53 E-value=0.035 Score=51.19 Aligned_cols=37 Identities=35% Similarity=0.355 Sum_probs=26.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS 190 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 190 (876)
..+.|+|.+|+||||+|+.+... .......++.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCE
Confidence 57899999999999999999873 33322234455443
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.12 Score=55.78 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=78.5
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc---------------------cCCe
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR---------------------NFEK 183 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~ 183 (876)
+++|-+....++..+..... ....-+-++|+.|+||||+|.++.+. +.. .++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 46677777888888877432 12334889999999999999888763 211 1245
Q ss_pred EEEEEeCCchh---HHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh
Q 042981 184 VIWVCVSDTFE---EIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM 245 (876)
Q Consensus 184 ~~wv~vs~~~~---~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~ 245 (876)
+..+..|+... ..+..+++.+. +|++..-+.+.-..++..+.......++|++|.+. .+...
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 56666666554 34455555554 67776555455566666676677788888888732 33332
Q ss_pred h-CCcceEeCCC
Q 042981 246 M-GSTNIIFIEQ 256 (876)
Q Consensus 246 ~-~~~~~~~l~~ 256 (876)
. .....+++.+
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 2 1234555555
No 236
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.47 E-value=0.06 Score=53.78 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 200 (876)
.-+++-|+|.+|+|||++|.++.. .....-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 458999999999999999988765 2333456789999876 66555443
No 237
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.46 E-value=0.04 Score=57.83 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=43.8
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.+++|.++.++++++.+.......+..-+|+-++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876543356779999999999999999998876
No 238
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.44 E-value=0.032 Score=66.84 Aligned_cols=44 Identities=30% Similarity=0.274 Sum_probs=36.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH
Confidence 368999999999999887542 22356899999999999999987
No 239
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.42 E-value=0.025 Score=30.74 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=9.7
Q ss_pred CCcCEEEEccCCCCCCCC
Q 042981 858 PRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 858 p~L~~L~i~~c~~L~~lP 875 (876)
|+|+.|++++|. |++||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777887775 77776
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.41 E-value=0.032 Score=67.64 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=36.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH
Confidence 359999999999999997542 23355899999999999998887
No 241
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.36 E-value=0.16 Score=58.82 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....++|....++++++.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 346799999999999988865432 2234679999999999999999974
No 242
>PRK03839 putative kinase; Provisional
Probab=94.36 E-value=0.029 Score=54.53 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|+|++|+||||+|+++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 243
>PRK04040 adenylate kinase; Provisional
Probab=94.28 E-value=0.035 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 244
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.28 E-value=0.042 Score=65.69 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=39.9
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.+.+|.++-+++|+++|..........-.++.++|++|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988742211122346899999999999999999986
No 245
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.24 E-value=0.034 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++|.|+|+.|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
No 246
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.21 E-value=0.037 Score=53.58 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 247
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.20 E-value=0.086 Score=56.92 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred CceeeccchHHHHHHHhhcc-------CC-cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE-------SS-EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.++.++.+...+... .. ......+-|-++|+.|+||||+|+++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889888888886666532 00 0012346788999999999999999987
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.18 E-value=0.13 Score=61.13 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=37.3
Q ss_pred ceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.++.++.|.+.+..... ..+.....+-++|+.|+|||++|+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 489999999999888864211 0022345788999999999999999986
No 249
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.18 E-value=0.061 Score=50.03 Aligned_cols=35 Identities=40% Similarity=0.350 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVC 188 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (876)
.||-|.|..|.||||||+++.+ ++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5888999999999999999998 5555444555553
No 250
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.17 E-value=0.062 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987754
No 251
>PHA00729 NTP-binding motif containing protein
Probab=94.15 E-value=0.066 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+...|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999887
No 252
>PRK00625 shikimate kinase; Provisional
Probab=94.14 E-value=0.033 Score=53.37 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.++||.|+||||+++.+.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.07 E-value=0.066 Score=52.52 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=31.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC-chhHHHHHHHHHHh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVANAIIEG 205 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 205 (876)
++||.+||+.|+||||.+-+++. +.+..=..+..|+... .....+-++...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~ 54 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEI 54 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHH
Confidence 37999999999999987765554 2333334566777543 22333344444444
No 254
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.06 E-value=0.0033 Score=72.17 Aligned_cols=166 Identities=22% Similarity=0.274 Sum_probs=81.6
Q ss_pred ccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeec-CCC-CCC----chhhcccCCcEEEEecCCCCC--C
Q 042981 654 NMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSY-GGN-IFP----KWLTSLTNLRDLRLKSCVICE--H 725 (876)
Q Consensus 654 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~-~lp----~~l~~l~~L~~L~L~~~~~~~--~ 725 (876)
.+++|+.|.+..+.... ...........++|+.|++.++ ... ..+ .....+++|+.|++++|...+ .
T Consensus 186 ~~~~L~~l~l~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKIT-----DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCC-----hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 46777777776553210 1113344556677888887762 111 111 122256778888888777322 2
Q ss_pred CCCCCc-cc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccC
Q 042981 726 FPPLGK-LP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENIS 803 (876)
Q Consensus 726 lp~l~~-Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 803 (876)
+..+.. .| |+.|.+.+|..+. +..+.. ....+++|++|++++|..+.+... .....
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt--~~gl~~----------------i~~~~~~L~~L~l~~c~~~~d~~l----~~~~~ 318 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLT--DEGLVS----------------IAERCPSLRELDLSGCHGLTDSGL----EALLK 318 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccc--hhHHHH----------------HHHhcCcccEEeeecCccchHHHH----HHHHH
Confidence 222332 56 7777766665422 111111 123577777777777766644322 11223
Q ss_pred cccccceeeeccCcc---CCCC--CCCCCCC-CCccEEEEecCCCchhh
Q 042981 804 IMPRLSSLTIWYCPR---LRVL--PDYLFQS-TTLQKLSISYCPIMEEL 846 (876)
Q Consensus 804 ~l~~L~~L~l~~c~~---l~~l--p~~l~~l-~~L~~L~l~~~~~l~~l 846 (876)
.+|+|+.|.+..+.. ++.+ -...... ..+..+.+.+|+.+..+
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 456555555444332 2211 1111111 14566666666666554
No 255
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.04 E-value=0.076 Score=50.81 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc-ccCCeEEEEEeCCchhH---HHHHHHHHHh--------------ccccccC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFEE---IRVANAIIEG--------------LDDVWDG 212 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~---~~~~~~i~~~--------------lDdvw~~ 212 (876)
..++-+.|+.|+|||.||+++.+ .+. +.....+-+..++-... .......+.. ||++...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 46788999999999999999987 343 34445555555542220 1111111111 8888776
Q ss_pred Cc-----------cChhhHHhhhcc
Q 042981 213 DY-----------NKWEPFFHCLKH 226 (876)
Q Consensus 213 ~~-----------~~~~~l~~~l~~ 226 (876)
.. ..|..+...+..
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhcc
Confidence 66 567777777654
No 256
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.96 E-value=0.034 Score=53.85 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 257
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.96 E-value=0.032 Score=55.98 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 258
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.94 E-value=0.033 Score=55.08 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 259
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.041 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|=||=|+||||||+++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 47899999999999999999997
No 260
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.90 E-value=0.097 Score=53.40 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=36.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCcccccc----CCeEEEEEeCCchhHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~ 200 (876)
.-.++.|+|.+|+||||||.+++-....... -..++|++....++..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 4579999999999999999888643222221 36789999888777655433
No 261
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.87 E-value=0.059 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999999986
No 262
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.87 E-value=0.051 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|.|+|++|+||||+|+++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 263
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.072 Score=47.89 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=27.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 196 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 196 (876)
.-|-|.|-+|+||||+|+++.... . .-|+++|+-....
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vkEn 45 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVKEN 45 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHhhh
Confidence 457799999999999999998521 1 2367777644333
No 264
>PRK10536 hypothetical protein; Provisional
Probab=93.84 E-value=0.22 Score=50.27 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=38.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~ 184 (876)
..+.++.......+.++.. ..+|.+.|..|.|||+||.++..+.-..+.|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 3467788888888888853 2488999999999999998877642223445443
No 265
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.071 Score=54.66 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=41.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH-----------HHHHHHHHh----ccccccCCcc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI-----------RVANAIIEG----LDDVWDGDYN 215 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------~~~~~i~~~----lDdvw~~~~~ 215 (876)
..-+.++|.+|+|||.||.++.+. +.+.=-.+.++++.+-+..- ++.+.+... |||+-.....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCC
Confidence 345889999999999999999984 43322356677765533221 122222222 8998765545
Q ss_pred Chh
Q 042981 216 KWE 218 (876)
Q Consensus 216 ~~~ 218 (876)
.|.
T Consensus 183 ~~~ 185 (254)
T COG1484 183 QEE 185 (254)
T ss_pred HHH
Confidence 555
No 266
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.74 E-value=0.054 Score=49.87 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=26.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-ccCCeEEEEEeCC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVIWVCVSD 191 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~ 191 (876)
+||.|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4899999999999999999998 443 4455555555444
No 267
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.71 E-value=0.041 Score=29.91 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=6.4
Q ss_pred ccCeeeccCccccccc
Q 042981 529 HLKYLNLSELCIERLP 544 (876)
Q Consensus 529 ~Lr~L~Ls~~~i~~lp 544 (876)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 268
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.054 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999887765
No 269
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.67 E-value=0.049 Score=52.91 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 270
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.65 E-value=0.16 Score=60.61 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=37.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..++|....++++++.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4699999999998877764322 2245789999999999999999974
No 271
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.65 E-value=0.13 Score=46.72 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred cccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc-ccccCcccCeeeccCcc
Q 042981 461 SIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE-NVRKLIHLKYLNLSELC 539 (876)
Q Consensus 461 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~~L~~Lr~L~Ls~~~ 539 (876)
.|.++++|+.+.+... ...+....|..++.|+.+.+ ..+ +..++. .+.++..|+++.+.. .
T Consensus 7 ~F~~~~~l~~i~~~~~-------~~~I~~~~F~~~~~l~~i~~---------~~~-~~~i~~~~F~~~~~l~~i~~~~-~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-------IKKIGENAFSNCTSLKSINF---------PNN-LTSIGDNAFSNCKSLESITFPN-N 68 (129)
T ss_dssp TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEE---------SST-TSCE-TTTTTT-TT-EEEEETS-T
T ss_pred HHhCCCCCCEEEECCC-------eeEeChhhcccccccccccc---------ccc-ccccceeeeecccccccccccc-c
Confidence 3445555555555321 12333344555555555555 322 333332 234444555555544 3
Q ss_pred ccccch-hhccCCcccEEeecC
Q 042981 540 IERLPK-TLCELYNLQKLDIRW 560 (876)
Q Consensus 540 i~~lp~-~i~~L~~L~~L~L~~ 560 (876)
+..++. .+..+.+|+.+++..
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETT
T ss_pred ccccccccccccccccccccCc
Confidence 333333 233455555555543
No 272
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.62 E-value=0.12 Score=47.62 Aligned_cols=42 Identities=36% Similarity=0.357 Sum_probs=29.0
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHH
Q 042981 154 ISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 200 (876)
|-++|..|+|||+||+.+++ .... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEecccccccccee
Confidence 56899999999999999987 3321 233456777677666543
No 273
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.61 E-value=0.22 Score=57.06 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...++|....++++.+.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 45699999999999988876432 2345779999999999999999974
No 274
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.61 E-value=0.051 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999987
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.60 E-value=0.39 Score=44.60 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999999874
No 276
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.59 E-value=0.059 Score=65.71 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence 359999999999999997542 23345899999999999998877
No 277
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.52 E-value=0.093 Score=47.41 Aligned_cols=24 Identities=42% Similarity=0.324 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-.+|.+.|.-|.||||+++.+.+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 278
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.49 E-value=0.055 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 279
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=93.47 E-value=0.13 Score=52.58 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=32.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCC-eEEEEEeCCchhH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEE 195 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~ 195 (876)
+-++|+|..|+||||||+.+++ .++.+|+ .++++.+.+....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~E 112 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTRE 112 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHH
Confidence 5689999999999999999998 5555564 5666777776543
No 280
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.44 E-value=0.046 Score=53.30 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.42 E-value=0.12 Score=45.67 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=34.9
Q ss_pred CceeeccchHHHHHHHhhccCC-cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS-EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|..-..+.|++.+..--. ......-|++.+|..|+|||.+|+.+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 3578877777777766653211 1135678999999999999987666654
No 282
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.37 E-value=0.27 Score=51.32 Aligned_cols=38 Identities=39% Similarity=0.426 Sum_probs=28.7
Q ss_pred eccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHH
Q 042981 128 GRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLA 171 (876)
Q Consensus 128 Gr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v 171 (876)
+|..+..--+++|+. +.+..|.+.|.+|.|||.||-+.
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHH
Confidence 355555666677774 47899999999999999888543
No 283
>PRK13947 shikimate kinase; Provisional
Probab=93.37 E-value=0.052 Score=52.21 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 284
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.37 E-value=0.11 Score=54.84 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVA 199 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 199 (876)
.+++-+.|.|||||||+|-+..- ........++-|+.....+...++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 47899999999999999977443 333444556666665554444433
No 285
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.34 E-value=0.07 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+...+|.|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 286
>PRK05439 pantothenate kinase; Provisional
Probab=93.33 E-value=0.11 Score=54.42 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 148 QKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....-||+|.|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998875
No 287
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.33 E-value=0.044 Score=47.88 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=17.9
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876
No 288
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.89 Score=48.74 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=94.1
Q ss_pred chHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC-----ccc--------------cccCCeEEEEEeC-
Q 042981 131 DEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN-----DEV--------------KRNFEKVIWVCVS- 190 (876)
Q Consensus 131 ~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-----~~~--------------~~~F~~~~wv~vs- 190 (876)
..-+++...+..+ .-..-+-+.|..|+||+|+|.++..- +.- ....+-..++.-.
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 3455666666543 23467789999999999999876431 110 1122233444322
Q ss_pred --CchhHH---HHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEe
Q 042981 191 --DTFEEI---RVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIF 253 (876)
Q Consensus 191 --~~~~~~---~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~ 253 (876)
....++ ++.+.+... +|++..-+.+..+.++..+-....++.+|++|.+. .+... .+....+.
T Consensus 84 ~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~ 163 (334)
T PRK07993 84 GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHY 163 (334)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccccc
Confidence 123332 233333222 78887766677888888888877788888777764 45433 33456889
Q ss_pred CCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 254 IEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 254 l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
+.+++.++. +....... -.+-+..++..++|.|..+..+
T Consensus 164 ~~~~~~~~~~~~L~~~~~~---~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 164 LAPPPEQYALTWLSREVTM---SQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred CCCCCHHHHHHHHHHccCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 999988887 22221111 1233667899999999654433
No 289
>PRK06217 hypothetical protein; Validated
Probab=93.32 E-value=0.055 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.|.|.|++|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 290
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.32 E-value=0.072 Score=63.22 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=35.9
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++||+++++++++.|.... . .-+-++|.+|+|||++|+.+++
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----~-~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----K-NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----C-CCeEEECCCCCCHHHHHHHHHH
Confidence 58999999999999888642 1 2235899999999999999886
No 291
>PHA02244 ATPase-like protein
Probab=93.29 E-value=0.21 Score=53.16 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|-|+|..|+|||+||+++++
T Consensus 122 VLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 292
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.29 E-value=0.0087 Score=68.69 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=93.8
Q ss_pred CCCccEEEEeecCCCC---CCchhhcccCCcEEEEecC-CCCCCCC-----CCCccc-CceEeecCCCCceEeCcccccC
Q 042981 686 PLNVKELGIVSYGGNI---FPKWLTSLTNLRDLRLKSC-VICEHFP-----PLGKLP-LEKLTLYGLYGVKRVGNEFLGI 755 (876)
Q Consensus 686 ~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~~-~~~~~lp-----~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~ 755 (876)
.++|+.|.+.++.... +-.....+++|+.|++++| ......+ .....+ |+.|++..+..+...+-...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH--
Confidence 6788888887765332 2233447889999999874 2222111 122345 77777777664322211111
Q ss_pred CCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCC--CCCCCCCCCCCcc
Q 042981 756 EGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLR--VLPDYLFQSTTLQ 833 (876)
Q Consensus 756 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~ 833 (876)
...+++|+.|.+..|..+++..+ ......+|+|++|+|++|..+. .+.....++++|+
T Consensus 265 ----------------~~~c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 265 ----------------ASRCPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLR 324 (482)
T ss_pred ----------------HhhCCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchh
Confidence 12478888888887876655444 2234467889999998887753 1232334466655
Q ss_pred EEEEecC---CCchhhccccccCCCCCC--CcCEEEEccCCCCCCC
Q 042981 834 KLSISYC---PIMEELRILEDHRTTDIP--RLSSLEIEYCPKLNVL 874 (876)
Q Consensus 834 ~L~l~~~---~~l~~l~~~~~~~~~~lp--~L~~L~i~~c~~L~~l 874 (876)
.|.+..+ +.++.+... .....+ .+..+.+.+|++++.+
T Consensus 325 ~l~~~~~~~c~~l~~~~l~---~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 325 ELKLLSLNGCPSLTDLSLS---GLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred hhhhhhcCCCccHHHHHHH---HhhccCchhHhHHHHhcCCCcchh
Confidence 5554443 345443221 122222 6777788888887653
No 293
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.74 Score=48.85 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=91.1
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC-----cccc--------------ccCCeEEEEEe--C
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN-----DEVK--------------RNFEKVIWVCV--S 190 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-----~~~~--------------~~F~~~~wv~v--s 190 (876)
..+.+...+..+ .-..-+-+.|+.|+||+|+|+++.+- +... +..+-..++.- +
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDN 84 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccC
Confidence 345555555432 23467779999999999999887642 1100 01122333421 2
Q ss_pred CchhHHH---HHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHh-hCCcceEeCC
Q 042981 191 DTFEEIR---VANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARM-MGSTNIIFIE 255 (876)
Q Consensus 191 ~~~~~~~---~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~ 255 (876)
....+.. +.+.+... +|++..-+.+..+.++..+-....+..+|++|.+. .+... .+....+.+.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 2233333 22222221 78887777678888888888877788888887764 44433 3346799999
Q ss_pred CCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHH
Q 042981 256 QLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 256 ~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
+++.++. +....... -..-+...++.++|.|..+.
T Consensus 165 ~~~~~~~~~~L~~~~~~---~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 165 PPEEQQALDWLQAQSSA---EISEILTALRINYGRPLLAL 201 (325)
T ss_pred CCCHHHHHHHHHHHhcc---ChHHHHHHHHHcCCCHHHHH
Confidence 9999887 22211111 11124566788999996443
No 294
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.21 E-value=0.084 Score=51.43 Aligned_cols=36 Identities=36% Similarity=0.449 Sum_probs=28.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEE
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVC 188 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (876)
.++|.|+|+.|+|||||++++.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 37889999999999999999987 4556675444444
No 295
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.21 E-value=0.13 Score=51.95 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=34.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 198 (876)
.-.++-|+|.+|+||||+|.++... ....-..++|++.. .++..++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999888763 33334678899877 5555443
No 296
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.19 E-value=0.16 Score=55.06 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhcc--------CCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE--------SSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.++.++.+..++... ........+-|-++|+.|+||||||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999998888777531 000011246789999999999999999987
No 297
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.13 E-value=0.047 Score=32.00 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=12.0
Q ss_pred cccEEeecCCCCCccccccccC
Q 042981 552 NLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 552 ~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
+|++|||++| .+..+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4666666666 44456655443
No 298
>PRK13949 shikimate kinase; Provisional
Probab=93.08 E-value=0.065 Score=51.31 Aligned_cols=21 Identities=48% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-|.|+|+.|+||||+|+.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 299
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.06 E-value=0.12 Score=50.44 Aligned_cols=21 Identities=48% Similarity=0.776 Sum_probs=18.0
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|+|.|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999987443
No 300
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.06 E-value=0.095 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.|.|+.|+|||||+++++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67889999999999999999984
No 301
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.06 E-value=0.11 Score=52.22 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=29.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV 189 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (876)
-.++|+|..|.|||||+..+.. ...+.|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3578999999999999998886 47778987777654
No 302
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.15 Score=48.08 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDE 176 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (876)
..+.++|..|.||||+.+.+|..++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5788999999999999999997544
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.03 E-value=0.078 Score=52.65 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++...|-++||+|.||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45677888999999999999999873
No 304
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.02 E-value=0.069 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 305
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.17 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|+|+|.+|+||||++.++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999988875
No 306
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.00 E-value=0.061 Score=50.17 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.99 E-value=0.064 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++.|+|+.|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999999987
No 308
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.97 E-value=0.074 Score=48.89 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.96 E-value=0.13 Score=53.48 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=27.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS 190 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 190 (876)
..++|.++|.+|+||||.+.++.. .....-..+++++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC
Confidence 568999999999999998877765 333332345555543
No 310
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=0.97 Score=48.38 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=56.9
Q ss_pred ccccccCCccChhhHHhhhccCCCCCEEEEEcCc-hHHHHh-hCCcceEeCCCCCcccc--ccCCCcCCccchHHHHHHH
Q 042981 206 LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN-ESVARM-MGSTNIIFIEQLTEEES--FSGRSFEDCEKLEPIGRKI 281 (876)
Q Consensus 206 lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i 281 (876)
+|++..-+.+.++.++..+-....++.+|++|.+ ..+... .+....+.+.+++.++. +..... . +. ....
T Consensus 138 I~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~-~~----~~~~ 211 (342)
T PRK06964 138 LYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V-AD----ADAL 211 (342)
T ss_pred EechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C-Ch----HHHH
Confidence 7888777777888999988888788877776665 444433 33457899999998887 332211 1 11 1235
Q ss_pred HHHcCCCchHHHHhh
Q 042981 282 ARKCKGLPLAAKATG 296 (876)
Q Consensus 282 ~~~c~GlPlai~~~~ 296 (876)
+..++|.|..+..+.
T Consensus 212 l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 212 LAEAGGAPLAALALA 226 (342)
T ss_pred HHHcCCCHHHHHHHH
Confidence 778899997655443
No 311
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.93 E-value=0.068 Score=57.06 Aligned_cols=41 Identities=39% Similarity=0.454 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCchHH-HHHHHHHcCccccccCCeEEEEEeCC
Q 042981 150 GLHVISLVGLGGMGKT-TLAQLAYNNDEVKRNFEKVIWVCVSD 191 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~ 191 (876)
+-+||.+||+.||||| |||+..++-. ....=..++.|+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDt 243 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDT 243 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEecc
Confidence 3689999999999999 5777766522 112224566666543
No 312
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.91 E-value=0.1 Score=49.53 Aligned_cols=40 Identities=35% Similarity=0.428 Sum_probs=29.2
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 194 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 194 (876)
++.|+|.+|+||||+|+.+... ....-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4679999999999999998763 333335677777765543
No 313
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.76 Score=46.31 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=35.7
Q ss_pred ceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 125 EVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++=|.+...++|.+...-.-.. +-...+-|-++|.+|.|||-||++|+|.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4567788888887765432110 1234566778999999999999999985
No 314
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.90 E-value=0.13 Score=53.37 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=34.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 193 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 193 (876)
.-+++.|.|.+|+|||++|.+... +..+....++||+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 568999999999999999976665 455558899999988754
No 315
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.89 E-value=0.19 Score=50.63 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=31.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 194 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 194 (876)
.-.++.|.|.+|+||||+|.++.. .....=..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 458899999999999999988775 2322334677887665554
No 316
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.85 E-value=0.15 Score=51.55 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=35.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccC------CeEEEEEeCCchhHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF------EKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~ 200 (876)
.-.++.|+|.+|.|||+||.++... ....- ..++|++....++..++.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 4579999999999999999887652 21222 4678998887777655543
No 317
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.08 Score=49.21 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.3
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 042981 153 VISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~ 172 (876)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 318
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.77 E-value=0.077 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 319
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.74 E-value=0.084 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999763
No 320
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.72 E-value=0.33 Score=55.77 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=35.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++|....++++++.+..-.. .-.-|-|+|-.|+||+++|++++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 4689999888888887754322 123367999999999999999876
No 321
>PRK13948 shikimate kinase; Provisional
Probab=92.70 E-value=0.088 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999999987
No 322
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.67 E-value=0.25 Score=56.18 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=38.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG 205 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 205 (876)
+.-+|+-++|++|+||||||.-|+++.- | .++=|..|+.-....+-+.|...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~a 375 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENA 375 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHH
Confidence 4568999999999999999999987432 2 35567788877766666665544
No 323
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.079 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999874
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.63 E-value=0.19 Score=50.40 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=27.9
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+..++++.+.... .+..+|+|.|.+|+||+||..++..
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 4556676666542 3568999999999999999988766
No 325
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.60 E-value=0.14 Score=50.45 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.||||||+.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 326
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.60 E-value=0.17 Score=47.28 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=29.2
Q ss_pred chHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc
Q 042981 131 DEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 131 ~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
+..+++.+.|. + +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45677777774 2 789999999999999999998753
No 327
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.58 E-value=0.095 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHcCc
Q 042981 154 ISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (876)
|.|+|..|+|||||.+.+...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998754
No 328
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.57 E-value=0.11 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~ 172 (876)
..++|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 678999999999999999976
No 329
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.57 E-value=0.089 Score=49.43 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNNDEVKRNF 181 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (876)
-|.++||.|+||||+.+++.+ ...-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 467899999999999999987 444444
No 330
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.57 E-value=0.088 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.|.|+|+.|.||||+|+.+.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999987
No 331
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.57 E-value=0.084 Score=49.71 Aligned_cols=20 Identities=45% Similarity=0.699 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|+|+.|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999986
No 332
>PRK13975 thymidylate kinase; Provisional
Probab=92.56 E-value=0.091 Score=51.87 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 333
>PRK14530 adenylate kinase; Provisional
Probab=92.52 E-value=0.085 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 334
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.49 E-value=0.1 Score=52.02 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++++|+++|..|+|||||.+++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999998876
No 335
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.47 E-value=0.008 Score=57.97 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=62.8
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI 571 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 571 (876)
...++...+||+ +.|.+..+-..+.-+..|..|+++.|.|..+|..++.+..+..+++..| .....|.++
T Consensus 38 i~~~kr~tvld~---------~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDL---------SSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred hhccceeeeehh---------hhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccc
Confidence 445667777787 5555555555566677777788888888888888877777777777766 677778888
Q ss_pred cCcCCCceEecCCCCC
Q 042981 572 GKLKKMRSLLNGGTPL 587 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~ 587 (876)
++++.++++++.++.+
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 8888888888777754
No 336
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.47 E-value=0.15 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.+|+|.|..|.||||||+.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3678999999999999999999986
No 337
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.40 E-value=0.096 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|++|+|+-|+|||||..++-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999876
No 338
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.40 E-value=0.084 Score=49.61 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
|++|+|+.|+|||||+.++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 339
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.39 E-value=0.11 Score=50.35 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=42.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccC-CeEEEEEeCCchh
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFE 194 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~ 194 (876)
.++||-++.++++--.-. +++.+-+-|-||+|+||||-+..+.+. -+...+ +.+.=...|+.-.
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccc
Confidence 479999988888765444 236777889999999999977776652 112222 3444455555443
No 340
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.38 E-value=0.099 Score=57.79 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=38.2
Q ss_pred CceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHcCccccccC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF 181 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (876)
.++.|.+..+++|.+.+...-.. +-...+-+.++|.+|+|||++|+++++ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 35678888888888776421000 012345677999999999999999998 444444
No 341
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.34 E-value=0.17 Score=56.88 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=37.1
Q ss_pred CceeeccchHHHHHHHhhccCC-------cCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESS-------EQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.|.+..+++|.+.+...-- -+-...+-+-++|++|.|||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4688899999988887642100 00123456889999999999999999983
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.32 E-value=0.088 Score=49.24 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 343
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.31 E-value=0.22 Score=49.16 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 344
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.29 E-value=0.13 Score=56.46 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=37.1
Q ss_pred CceeeccchHHHHHHHhhccCC-------cCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESS-------EQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.|.+..+++|.+.+...-. -+-...+-|.++|.+|.|||++|+++++.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4688998888888876642100 00123567889999999999999999983
No 345
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.23 E-value=0.12 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 346
>PRK13946 shikimate kinase; Provisional
Probab=92.17 E-value=0.1 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.|.++|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 347
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.13 E-value=0.18 Score=51.31 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=39.4
Q ss_pred HHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHH
Q 042981 134 NELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 134 ~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 200 (876)
.+++..+... .++..||+|.|.+|+||+||..++-..-.-+.+=-.++=|.-|..|.--.++.
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 4556555543 34778999999999999999987766322222222344455566665444443
No 348
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.03 E-value=0.13 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=20.9
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHH
Q 042981 148 QKGLHVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~ 172 (876)
+++.+||++.|-|||||||.|-.+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA 27 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTL 27 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999999999775544
No 349
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.03 E-value=0.17 Score=52.42 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=26.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEe
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCV 189 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (876)
++|+|+|.+|+|||||+.++.. ..++.. .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEEE
Confidence 6899999999999999999887 454444 3555544
No 350
>PRK06761 hypothetical protein; Provisional
Probab=91.99 E-value=0.2 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++|.|.|+.|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999973
No 351
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.98 E-value=0.19 Score=48.85 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=29.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..+..+.-.... ..=|-++|..|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688888777776554432 24578999999999999999874
No 352
>PF13245 AAA_19: Part of AAA domain
Probab=91.91 E-value=0.33 Score=39.15 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEEEEecCCchHH-HHHHHHHc
Q 042981 152 HVISLVGLGGMGKT-TLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKT-tLa~~v~~ 173 (876)
+++.|.|.+|.||| |+++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57778999999999 55555554
No 353
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.88 E-value=0.28 Score=54.39 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=26.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS 190 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 190 (876)
-+++.++|++|+||||++.++.........-..++.|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4699999999999999887765421101222355666643
No 354
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.82 E-value=0.098 Score=49.85 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.1
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|+|+.|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999886
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.80 E-value=0.14 Score=53.70 Aligned_cols=24 Identities=42% Similarity=0.374 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+++.|+|..|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988775
No 356
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.80 E-value=0.11 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.|+|+|-||+||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998866654
No 357
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.77 E-value=0.15 Score=50.65 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+.|.|+|..|+|||||++++..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 568899999999999999999975
No 358
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.75 E-value=0.12 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|+|+|-||+||||+|-.+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998866554
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.72 E-value=0.39 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+..+|.|+|..|+|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999887
No 360
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.71 E-value=0.13 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999997764
No 361
>PRK13695 putative NTPase; Provisional
Probab=91.71 E-value=0.15 Score=49.17 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|+|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 362
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.70 E-value=0.12 Score=53.99 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+||+|+|-||+||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 6789999999999998876654
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.62 E-value=0.32 Score=53.36 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...||.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987765
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.61 E-value=0.15 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999873
No 365
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.59 E-value=0.15 Score=48.05 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 366
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=91.57 E-value=0.24 Score=44.92 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=34.4
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHH--HHHHHHcCccccccCCeEEEEEeCCchh
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTT--LAQLAYNNDEVKRNFEKVIWVCVSDTFE 194 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt--La~~v~~~~~~~~~F~~~~wv~vs~~~~ 194 (876)
+..-++++|..--- .++-++|||-||+-||||- +|..||.+. -|.-+|.+.=
T Consensus 37 eLGlLVDFmaEl~K--~~Gh~lIGiRGmPRVGKTEsivAasVcAnK---------rW~f~SSTli 90 (192)
T PF11868_consen 37 ELGLLVDFMAELFK--EEGHKLIGIRGMPRVGKTESIVAASVCANK---------RWLFLSSTLI 90 (192)
T ss_pred HhccHHHHHHHHHH--hcCceEEeecCCCccCchhHHHHHhhhcCc---------eEEEeeHHHH
Confidence 44445554432110 2367999999999999994 667788643 3888887543
No 367
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.56 E-value=0.13 Score=48.96 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.9
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|+|.|..|+|||||++++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 368
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.55 E-value=0.13 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|+|.|-||+||||++-.+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999997766554
No 369
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.52 E-value=0.13 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.-|.|+|.+|+|||||+.++.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 45789999999999999998875
No 370
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.50 E-value=0.14 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|+|..|.||||+++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999997
No 371
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.46 E-value=0.46 Score=56.40 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+.++|....++++++.+..... .... |-|+|..|+||+++|+++++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~~p-vli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SSFP-VLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cCCC-EEEECCCCcCHHHHHHHHHHh
Confidence 4689999888888887765432 1233 679999999999999999873
No 372
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.43 E-value=0.17 Score=49.28 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|+.|+|||||++++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 373
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.42 E-value=0.17 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|+|+|+.|+|||||..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 374
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.41 E-value=0.15 Score=46.50 Aligned_cols=24 Identities=46% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcCc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
+.|-++|..|.|||||++++-..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999997753
No 375
>PRK04182 cytidylate kinase; Provisional
Probab=91.41 E-value=0.14 Score=49.60 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 376
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.39 E-value=0.16 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcCc
Q 042981 153 VISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
.|+++|.+|+|||||+.++..+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988643
No 377
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.17 Score=58.96 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=33.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+++++++++.|....- +-+| ++|-+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCCe--EecCCCCCHHHHHHHHHH
Confidence 3589999999999999986532 2233 579999999997655443
No 378
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.37 E-value=0.28 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++-+.|-|||||||+|-+..-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6889999999999999966543
No 379
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.33 E-value=0.55 Score=53.56 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..++|....+.++...+..... .-..|-|+|-.|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3589988888888777654322 2244679999999999999999874
No 380
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.31 E-value=0.21 Score=57.81 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-++++|-++.++++..++....-. ....+++.|+|..|.||||+++.+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999888653221 123468999999999999999999873
No 381
>PLN02200 adenylate kinase family protein
Probab=91.29 E-value=0.17 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|.|++|+||||+|+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 382
>PLN02348 phosphoribulokinase
Probab=91.28 E-value=0.17 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+...+|+|.|..|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 383
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.27 E-value=0.13 Score=47.13 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+|.|-|.+|.||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6889999999999999999874
No 384
>PRK14527 adenylate kinase; Provisional
Probab=91.27 E-value=0.16 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|.+|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 385
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.24 E-value=0.27 Score=47.65 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=26.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVC 188 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (876)
.|++|+|+.|.|||||.+.+..-+. .=+..+||.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEEC
Confidence 6899999999999999999986333 334667764
No 386
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.23 E-value=0.15 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|+|.|-||+||||+|-.+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788889999999998877664
No 387
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.17 E-value=0.39 Score=51.69 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=41.8
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 198 (876)
.++|.++.+..+...+... +-+-+.|.+|+|||+||+++.. .... ...+|.+.......++
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDL 85 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHh
Confidence 4888888887777777643 3367899999999999999987 3332 2344555544444443
No 388
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.15 E-value=0.41 Score=47.09 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..|+|.|..|+||||+|+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.13 E-value=0.15 Score=48.59 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=17.6
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|.|..|+|||||++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 390
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.11 E-value=0.15 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-++.|+|+|..|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999999999999999886
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.09 E-value=0.15 Score=43.38 Aligned_cols=21 Identities=52% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999988876
No 392
>PLN02796 D-glycerate 3-kinase
Probab=91.09 E-value=0.43 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..-+|+|.|..|.||||||+.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 567899999999999999999986
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.08 E-value=0.19 Score=53.34 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|++++|+.|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999988876
No 394
>PRK14974 cell division protein FtsY; Provisional
Probab=91.05 E-value=0.29 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.++|+.|+||||++.+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998877765
No 395
>PRK15453 phosphoribulokinase; Provisional
Probab=91.04 E-value=0.19 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998875
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.04 E-value=0.21 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.++.++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999988876
No 397
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.98 E-value=0.17 Score=48.61 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999976
No 398
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.95 E-value=0.15 Score=48.99 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.|.|+|+.|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999986
No 399
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.89 E-value=0.36 Score=51.62 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=37.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccC----CeEEEEEeCCchhHHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF----EKVIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~ 201 (876)
.-.++-|+|.+|+|||++|.++.-.......+ ..++||+....|+..++.+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 45788999999999999997776432221111 47899999998888776543
No 400
>PRK13768 GTPase; Provisional
Probab=90.86 E-value=0.26 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.|.||+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999977765
No 401
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=90.85 E-value=0.25 Score=52.71 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=34.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+||.++.+..++-.+... ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899988888876666643 334467999999999999999974
No 402
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=90.85 E-value=0.21 Score=50.65 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.5
Q ss_pred EEecCCchHHHHHHHHHcC
Q 042981 156 LVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 156 I~G~gGiGKTtLa~~v~~~ 174 (876)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999998873
No 403
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=90.84 E-value=0.21 Score=53.31 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-..+||.++.+..++..+... .+.-|-|.|..|+||||+|+.+++
T Consensus 16 f~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 457999998888777666543 445566999999999999999975
No 404
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=90.75 E-value=0.18 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+||+|+|-|||||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999998876554
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.74 E-value=0.17 Score=47.15 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999988875
No 406
>PLN02165 adenylate isopentenyltransferase
Probab=90.73 E-value=0.19 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-++|+|+|+.|+||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 446999999999999999999886
No 407
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.69 E-value=0.21 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...|+|+|..|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 345899999999999999999874
No 408
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=90.65 E-value=0.18 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+||+|+|-||+||||+|-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 6899999999999998766543
No 409
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.63 E-value=0.42 Score=51.01 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=37.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccc----cCCeEEEEEeCCchhHHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~ 201 (876)
.-.|+-|+|.+|+||||++.+++-...... .=..++||+....|+..++.+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 458899999999999999987765322211 0127899999988888776543
No 410
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=90.62 E-value=0.16 Score=49.16 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 411
>PRK15115 response regulator GlrR; Provisional
Probab=90.60 E-value=1.6 Score=49.46 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=32.6
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++|....+.++.+....-.. .+ ..|-|.|..|+|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~---~~-~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ---SD-VSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc---CC-CeEEEEcCCcchHHHHHHHHHHh
Confidence 477877777776665543221 12 34569999999999999999874
No 412
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.59 E-value=0.31 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+|+|+|.+|+|||||+..+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999988776
No 413
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.59 E-value=0.16 Score=52.33 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999886
No 414
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=90.53 E-value=0.4 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.218 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..-||+|.|..|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999864
No 415
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.19 Score=51.34 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=28.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc--ccCCeEEEEE
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK--RNFEKVIWVC 188 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~ 188 (876)
-++|-++|++|.|||+|.+++++.-.++ +.+....-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 3889999999999999999999865443 3444433443
No 416
>PRK08356 hypothetical protein; Provisional
Probab=90.49 E-value=0.21 Score=49.18 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~ 172 (876)
.+|+|.|+.|+||||+|+.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999983
No 417
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.49 E-value=0.33 Score=51.59 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=26.9
Q ss_pred HHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 134 NELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 134 ~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++++.+... .....+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4455555432 23678999999999999999988765
No 418
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.47 E-value=0.89 Score=50.96 Aligned_cols=24 Identities=42% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-++|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988775
No 419
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.59 Score=45.93 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=36.3
Q ss_pred CceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++=|.+-.+++|.+...-.-.. +-+..+-|-++|++|.|||.||++|.++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45677888888887765422110 1124566788999999999999999984
No 420
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.46 E-value=0.26 Score=54.20 Aligned_cols=50 Identities=28% Similarity=0.236 Sum_probs=34.4
Q ss_pred CceeeccchHHHHHHHhhcc-------CC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE-------SS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~-------~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.+...+... .. +....-.-|-++|..|+|||++|+.+.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899998888775544210 00 0011235688999999999999999986
No 421
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.72 Score=52.37 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=29.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 191 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 191 (876)
..-|-|.|..|+|||+||+++++... +++.-.+.+|+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST 470 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence 34578999999999999999998544 44444455666554
No 422
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.44 E-value=0.29 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|+|..|.||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988765
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.42 E-value=0.42 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++.++|.+|+||||+|.++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988875
No 424
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.41 E-value=0.32 Score=48.83 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999996
No 425
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=90.41 E-value=0.54 Score=47.05 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~ 172 (876)
+++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999984
No 426
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.40 E-value=0.32 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|||..|.||||+|+.+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc
Confidence 46899999999999999999986
No 427
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.37 E-value=0.33 Score=48.51 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=25.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWV 187 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (876)
.+++|+|..|.|||||++.+.... ......+|+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 59 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLF 59 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 689999999999999999999632 233455554
No 428
>PRK13976 thymidylate kinase; Provisional
Probab=90.35 E-value=0.33 Score=48.20 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|+|-|..|+||||+++.+++
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~ 22 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAE 22 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999997
No 429
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=90.34 E-value=0.22 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|+|.|-||+||||+|..+..
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999988776
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=90.33 E-value=0.63 Score=51.43 Aligned_cols=24 Identities=46% Similarity=0.469 Sum_probs=20.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...||.++|.+|+||||.|..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998876665
No 431
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.32 E-value=0.21 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|+.|.|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999996
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.28 E-value=0.19 Score=50.52 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999976
No 433
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.26 E-value=0.39 Score=50.75 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=34.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 196 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 196 (876)
.-+++-|+|.+|+||||||.+++- .....-..++||+....++..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH
Confidence 457888999999999999987664 233334578899888777753
No 434
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.24 E-value=0.22 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 435
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.23 E-value=0.77 Score=41.47 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=58.4
Q ss_pred ceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-
Q 042981 444 KVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP- 521 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp- 521 (876)
+++.+.+.. ....+ ...|.++.+|+.+.+..+ ...+....|..++.|+.+.+ .. .+..++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-------~~~i~~~~F~~~~~l~~i~~---------~~-~~~~i~~ 74 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-------LTSIGDNAFSNCKSLESITF---------PN-NLKSIGD 74 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-------TSCE-TTTTTT-TT-EEEEE---------TS-TT-EE-T
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-------ccccceeeeecccccccccc---------cc-ccccccc
Confidence 566666653 34444 567888889999998543 23445566889989999999 44 344444
Q ss_pred cccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCcccc-ccccCcCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELP-AGIGKLKKM 577 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 577 (876)
..+..+.+|+.+.+..+ +..++. .+.+. +|+.+.+..+ +..++ ..|.++++|
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 34577899999999776 676665 46666 8898888753 33333 345555555
No 436
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.23 E-value=0.23 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.18 E-value=0.35 Score=51.75 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVS 190 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 190 (876)
..+++.|+|..|+||||++..+... ....=..+.+|+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaD 243 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTD 243 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC
Confidence 4689999999999999999887753 22222345566554
No 438
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.13 E-value=0.24 Score=47.61 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 6899999999999999999986
No 439
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.12 E-value=0.22 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 440
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=1.1 Score=53.43 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred ceeeccchHHHHHHHhhccCCcCCC--CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC-----ch----
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQK--GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-----TF---- 193 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~---- 193 (876)
.++|.++.+..|-+.+......-.. ..-.+-+.|+.|+|||-||+++.. -+-+..+..+-|+.|+ ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~evskligsp 640 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQEVSKLIGSP 640 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhhhhhccCCC
Confidence 5788888888888888765421111 456778899999999999999876 3434444555555554 10
Q ss_pred ------hH-HHHHHHHHHh------ccccccCCccChhhHHhhhccC
Q 042981 194 ------EE-IRVANAIIEG------LDDVWDGDYNKWEPFFHCLKHG 227 (876)
Q Consensus 194 ------~~-~~~~~~i~~~------lDdvw~~~~~~~~~l~~~l~~~ 227 (876)
.. ..+...+-+. +|+|...+.+....+...+..|
T Consensus 641 ~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 641 PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred cccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 11 1222222222 8999776655566566666654
No 441
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.11 E-value=0.23 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|.|+|.+|+|||||++++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
No 442
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.08 E-value=0.24 Score=45.73 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|++|||..|.|||||.+.+..
T Consensus 33 eVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhc
Confidence 5999999999999999998876
No 443
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.07 E-value=0.25 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
. .+++|+|..|.|||||++.+..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhC
Confidence 6 8999999999999999999986
No 444
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.07 E-value=0.38 Score=52.72 Aligned_cols=51 Identities=29% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCceeeccchHHHHHHHhh-------c--cCCc-C--CCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLL-------F--ESSE-Q--QKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~-------~--~~~~-~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+..++|.++.++.+...+. . .... . ......|.++|+.|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3568999988888866551 1 0000 0 01125788999999999999999986
No 445
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.04 E-value=0.42 Score=50.44 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=33.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 196 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 196 (876)
.-+++-|+|..|+||||||.++... ....=..++||+.-..++..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH
Confidence 4579999999999999999776652 33333567888877766653
No 446
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.04 E-value=0.21 Score=49.19 Aligned_cols=20 Identities=40% Similarity=0.410 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999986
No 447
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.03 E-value=0.23 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 448
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.02 E-value=0.28 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..+|+++|..|+|||||+.++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998763
No 449
>PRK01184 hypothetical protein; Provisional
Probab=90.01 E-value=0.23 Score=48.42 Aligned_cols=18 Identities=33% Similarity=0.732 Sum_probs=16.7
Q ss_pred EEEEEEecCCchHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQ 169 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~ 169 (876)
.+|+|+|+.|+||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 589999999999999987
No 450
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.00 E-value=0.46 Score=44.88 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
...|+++|++|+|||||..++..+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 3567899999999999999998753
No 451
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=89.99 E-value=0.38 Score=54.83 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=37.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|....++++.+.+..-.. .-.-|-|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999988888764322 2245779999999999999999974
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.98 E-value=0.35 Score=46.53 Aligned_cols=21 Identities=57% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 453
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=89.98 E-value=0.24 Score=47.20 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|.++|.+|+|||||+.++.++
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988864
No 454
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.96 E-value=0.32 Score=47.51 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=25.8
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 042981 154 ISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 192 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 192 (876)
+.|.|.+|+|||+||.++... -.+.. ..++|++..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~-~~~~g-~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA-GLARG-EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-HHHCC-CcEEEEECCCC
Confidence 578999999999999876542 12222 45778877654
No 455
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=89.94 E-value=0.24 Score=47.49 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|+|+|.+|+|||||+..+.++
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988764
No 456
>PRK14532 adenylate kinase; Provisional
Probab=89.94 E-value=0.22 Score=48.78 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.|+|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999986
No 457
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=89.94 E-value=0.37 Score=48.32 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=25.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWV 187 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (876)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 58999999999999999999863 2234455544
No 458
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=89.92 E-value=0.22 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+||+|+|-||+||||+|-.+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998877665
No 459
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.88 E-value=0.2 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|..|.||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 460
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.87 E-value=0.38 Score=48.42 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWV 187 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (876)
.+++|+|..|.|||||.+.+... .......+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999863 2334455554
No 461
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.87 E-value=0.25 Score=49.69 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEEEec-CCchHHHHHHHHHc
Q 042981 152 HVISLVGL-GGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~-gGiGKTtLa~~v~~ 173 (876)
++|+|+|. ||+||||++-.+..
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~ 24 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAW 24 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHH
Confidence 68999996 88999999977765
No 462
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=89.85 E-value=0.34 Score=55.62 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=35.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|.+..++.+...+... ...-|-|+|..|+||||+|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 36999999999888776432 224457899999999999999986
No 463
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.84 E-value=0.25 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 464
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=89.81 E-value=0.48 Score=47.74 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=27.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 194 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 194 (876)
+.|+|+|-|||||+|.+..+.- -....-..++-|-.+.+.|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCc
Confidence 4689999999999999987754 2333334566666555443
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.76 E-value=0.39 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-..+.|+|..|.||||+++.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999886
No 466
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=89.74 E-value=0.8 Score=52.24 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|....++++.+.+..-.. .-.-|-|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 4599999999988888764322 2245779999999999999999974
No 467
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.74 E-value=0.25 Score=30.22 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=14.3
Q ss_pred CcccCeeeccCccccccchhh
Q 042981 527 LIHLKYLNLSELCIERLPKTL 547 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i 547 (876)
|.+|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 468
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.74 E-value=0.25 Score=30.22 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=14.3
Q ss_pred CcccCeeeccCccccccchhh
Q 042981 527 LIHLKYLNLSELCIERLPKTL 547 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i 547 (876)
|.+|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 469
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.71 E-value=0.53 Score=44.92 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=26.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCe
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEK 183 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 183 (876)
..+|.+-|..|+|||||..+..+ ..++.|..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~--~L~~~~~~ 43 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR--ALKDEYKI 43 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH--HHHhhCCe
Confidence 47899999999999999999887 56666653
No 470
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.69 E-value=0.57 Score=51.89 Aligned_cols=24 Identities=46% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.++|..|+||||.|..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999988876
No 471
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.68 E-value=0.36 Score=36.88 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.7
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 042981 153 VISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~ 172 (876)
+..|.|..|+|||||..++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999997654
No 472
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=89.66 E-value=0.39 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 473
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.66 E-value=0.36 Score=48.23 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 474
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.65 E-value=0.68 Score=45.62 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=34.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
..|+|=|+-|+||||.++.++. .++...-.++|..-.......+..+.++
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHH
Confidence 5789999999999999999998 5555544566665444444444444443
No 475
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.62 E-value=0.98 Score=48.91 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHH
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAI 202 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 202 (876)
++.++||+.++..+.+++...-+ .....-+.|.|-+|.|||.+...|+.+..-...=.+++.+..-.--...+++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45799999999999999987654 3456778999999999999999999753221111233445443334455666666
Q ss_pred HHh
Q 042981 203 IEG 205 (876)
Q Consensus 203 ~~~ 205 (876)
...
T Consensus 227 ~~~ 229 (529)
T KOG2227|consen 227 FSS 229 (529)
T ss_pred HHH
Confidence 655
No 476
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=89.56 E-value=0.32 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++|.|+|+.|+||+||++.+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999999873
No 477
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.54 E-value=0.27 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 478
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=89.54 E-value=0.27 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|.|+|.+|+|||||++++.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998764
No 479
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.53 E-value=0.41 Score=42.39 Aligned_cols=20 Identities=50% Similarity=0.798 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 042981 154 ISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~ 173 (876)
|.+.|.||+||||++..+.+
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998876
No 480
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.52 E-value=0.91 Score=49.34 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=30.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 193 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 193 (876)
.-.++.|.|.+|+|||||+.++... ....-..++|++..+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~ 122 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESP 122 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCH
Confidence 3468999999999999999888752 33333467788765543
No 481
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=89.52 E-value=0.32 Score=47.39 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|.|..|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 482
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=0.032 Score=53.08 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=46.1
Q ss_pred CcEEEEecCCCCC-CCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccc
Q 042981 712 LRDLRLKSCVICE-HFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEEL 789 (876)
Q Consensus 712 L~~L~L~~~~~~~-~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 789 (876)
++.++-+++.+.. .+..+..++ ++.|.+.+|..+..-.-++.+ ..+|+|+.|+|++|++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~------------------~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG------------------GLAPSLQDLDLSGCPRI 164 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc------------------ccccchheeeccCCCee
Confidence 4455555554432 334455566 666666666554332222221 14677777777777776
Q ss_pred cccccccccccccCcccccceeeeccCc
Q 042981 790 EEWNYRITRKENISIMPRLSSLTIWYCP 817 (876)
Q Consensus 790 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 817 (876)
++... ..+..+++|+.|.|.+-+
T Consensus 165 T~~GL-----~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 165 TDGGL-----ACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred chhHH-----HHHHHhhhhHHHHhcCch
Confidence 66543 344567777777776543
No 483
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=89.47 E-value=0.27 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|+||.|+||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998854
No 484
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=89.43 E-value=0.28 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHcCc
Q 042981 153 VISLVGLGGMGKTTLAQLAYNND 175 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (876)
-|+++|..|+|||||+.++....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988754
No 485
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=89.39 E-value=0.27 Score=51.32 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=16.5
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 042981 153 VISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~ 172 (876)
+|++.|-||+||||+|-.+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA 21 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLS 21 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHH
Confidence 57888999999999776654
No 486
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.39 E-value=0.27 Score=49.21 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 487
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=89.38 E-value=0.36 Score=52.83 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF 181 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (876)
+.-||+|+|..|+|||||+..+.. +.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~ 33 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERF 33 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCc
Confidence 457999999999999999999997 555554
No 488
>CHL00176 ftsH cell division protein; Validated
Probab=89.37 E-value=0.24 Score=57.76 Aligned_cols=51 Identities=25% Similarity=0.232 Sum_probs=34.4
Q ss_pred CceeeccchHHHHHHHhh---ccCC---cCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLL---FESS---EQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.+++|.++.++++.+.+. .... -+....+-|-++|++|+|||+||+++++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468898876666655442 2110 00123456889999999999999999873
No 489
>PRK14531 adenylate kinase; Provisional
Probab=89.35 E-value=0.28 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|+|++|+||||+|+.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 490
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=89.32 E-value=0.63 Score=54.24 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=32.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|.++.++.+...+... +-+-++|+.|+||||+|+.+.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~ 59 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE 59 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH
Confidence 46889888777766656432 2344899999999999999987
No 491
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.30 E-value=0.36 Score=45.10 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+..||=+.|..|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 457888999999999999999997
No 492
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=89.27 E-value=0.44 Score=48.02 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 493
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.26 E-value=0.68 Score=47.61 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=38.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc----CCeEEEEEeCCchhHHHHHHHHHHh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVANAIIEG 205 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~ 205 (876)
-.|.=|+|.+|+|||.|+-+++-...+... =..++|++-...|...++.+ |++.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 468899999999999999777643333221 13689999999999888754 5543
No 494
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.25 E-value=0.28 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 495
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=89.19 E-value=0.29 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..|+|+|.+|+|||||++.+..+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44599999999999999998864
No 496
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.19 E-value=0.29 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 497
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=89.18 E-value=0.29 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-|.|+|.+|+|||||+.++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4578999999999999988765
No 498
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.18 E-value=0.29 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999996
No 499
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.17 E-value=0.3 Score=46.31 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 042981 154 ISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~ 174 (876)
|.++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 500
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.12 E-value=0.27 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 6899999999999999999986
Done!