Query 042981
Match_columns 876
No_of_seqs 640 out of 4294
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.2E-43 3.1E-47 401.1 18.8 277 127-426 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-34 3.8E-39 335.2 11.1 250 125-418 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-32 5.3E-37 351.4 15.6 274 122-424 122-452 (1249)
4 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-30 1.1E-34 303.4 21.3 403 441-875 30-537 (606)
5 3rgz_A Protein brassinosteroid 100.0 1.4E-30 4.8E-35 313.6 18.0 407 442-875 199-721 (768)
6 3rgz_A Protein brassinosteroid 100.0 6.3E-31 2.2E-35 316.7 13.5 384 442-872 268-741 (768)
7 3t6q_A CD180 antigen; protein- 100.0 3E-29 1E-33 295.3 20.7 147 441-602 31-180 (606)
8 4eco_A Uncharacterized protein 100.0 1.3E-29 4.5E-34 298.0 15.7 199 443-668 81-389 (636)
9 1z6t_A APAF-1, apoptotic prote 100.0 2.2E-29 7.5E-34 294.7 16.4 269 123-422 123-450 (591)
10 4ecn_A Leucine-rich repeat pro 100.0 1.5E-29 5.1E-34 301.9 13.8 377 442-869 322-838 (876)
11 4eco_A Uncharacterized protein 100.0 3.5E-29 1.2E-33 294.3 13.7 367 442-872 205-633 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 2.3E-28 7.8E-33 285.7 20.4 389 441-875 26-510 (570)
13 3t6q_A CD180 antigen; protein- 100.0 5.3E-28 1.8E-32 284.6 22.7 404 442-875 56-539 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 8.5E-28 2.9E-32 282.9 24.4 143 447-606 15-160 (606)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4E-33 294.2 16.7 378 458-872 440-873 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-28 1.2E-32 282.5 18.1 397 442-870 25-509 (549)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-27 5E-32 290.3 22.5 402 441-875 22-542 (844)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-27 5.2E-32 275.1 19.8 385 442-869 20-479 (520)
19 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-27 6E-32 284.1 20.7 403 441-874 23-519 (680)
20 2z63_A TOLL-like receptor 4, v 99.9 2.2E-27 7.5E-32 277.4 20.0 402 442-874 51-534 (570)
21 1o6v_A Internalin A; bacterial 99.9 3.3E-26 1.1E-30 259.5 22.9 342 443-875 46-391 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-26 1.5E-30 265.1 22.3 149 707-869 350-508 (562)
23 1ziw_A TOLL-like receptor 3; i 99.9 8.2E-26 2.8E-30 269.6 24.4 191 447-668 8-207 (680)
24 3v47_A TOLL-like receptor 5B a 99.9 9.6E-26 3.3E-30 255.5 23.4 356 441-869 28-406 (455)
25 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-25 3.7E-30 273.9 24.3 389 442-871 47-560 (844)
26 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-25 3.8E-30 259.5 21.5 365 442-845 44-483 (520)
27 3o6n_A APL1; leucine-rich repe 99.9 8.6E-26 3E-30 250.1 18.8 303 464-843 43-352 (390)
28 3oja_B Anopheles plasmodium-re 99.9 2.3E-25 7.9E-30 260.4 18.8 303 464-843 49-358 (597)
29 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-25 4.9E-30 260.6 16.0 370 442-847 49-514 (549)
30 4fmz_A Internalin; leucine ric 99.9 1.1E-24 3.8E-29 237.2 19.4 300 443-869 44-344 (347)
31 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-24 5E-29 257.0 21.4 145 441-600 50-198 (635)
32 2id5_A Lingo-1, leucine rich r 99.9 2.7E-24 9.3E-29 244.9 21.1 259 447-743 15-283 (477)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-24 6.5E-29 251.3 19.2 359 442-844 51-511 (562)
34 3v47_A TOLL-like receptor 5B a 99.9 4.5E-24 1.6E-28 241.7 19.7 347 448-876 15-388 (455)
35 1o6v_A Internalin A; bacterial 99.9 9.9E-24 3.4E-28 239.1 22.3 319 442-844 67-389 (466)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-23 4.6E-28 236.0 23.0 284 492-842 60-351 (457)
37 3o6n_A APL1; leucine-rich repe 99.9 6E-24 2.1E-28 235.2 19.4 304 442-819 44-352 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 2.7E-23 9.2E-28 236.7 20.8 295 495-843 31-333 (477)
39 3oja_B Anopheles plasmodium-re 99.9 1.6E-23 5.5E-28 244.8 18.6 304 442-819 50-358 (597)
40 1jl5_A Outer protein YOPM; leu 99.9 3.5E-23 1.2E-27 232.4 18.5 350 442-869 10-407 (454)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4E-27 228.3 22.2 302 492-875 38-355 (457)
42 4fcg_A Uncharacterized protein 99.9 5.6E-23 1.9E-27 220.8 17.9 232 494-840 79-311 (328)
43 1jl5_A Outer protein YOPM; leu 99.9 4E-22 1.4E-26 223.7 22.8 278 529-869 132-427 (454)
44 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-22 6.3E-27 239.0 21.1 134 454-605 42-179 (635)
45 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.1E-27 219.2 19.3 286 463-875 41-327 (347)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-21 6.4E-26 210.0 22.2 140 444-604 34-177 (332)
47 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.4E-26 209.9 19.6 141 445-604 33-176 (330)
48 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-22 5.5E-27 216.0 10.2 246 443-745 50-304 (313)
49 1xku_A Decorin; proteoglycan, 99.9 8.8E-21 3E-25 204.6 22.2 147 690-868 174-329 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-21 7.9E-26 209.3 17.1 288 497-869 34-331 (332)
51 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-21 5.1E-26 208.4 10.7 200 466-743 50-255 (313)
52 1z7x_W Ribonuclease inhibitor; 99.8 3E-23 1E-27 235.4 -5.3 383 442-869 2-438 (461)
53 4fcg_A Uncharacterized protein 99.8 1.7E-20 5.8E-25 201.5 12.0 220 442-742 80-311 (328)
54 2z80_A TOLL-like receptor 2, v 99.8 3.1E-20 1.1E-24 202.3 12.0 260 496-847 52-318 (353)
55 3ogk_B Coronatine-insensitive 99.8 4E-21 1.4E-25 225.4 3.2 383 442-872 111-526 (592)
56 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-22 9.3E-27 227.5 -7.1 353 465-869 2-409 (461)
57 2z80_A TOLL-like receptor 2, v 99.8 8.8E-20 3E-24 198.7 11.6 248 444-744 53-313 (353)
58 3g06_A SSPH2 (leucine-rich rep 99.8 2E-18 6.7E-23 199.6 22.4 258 497-846 41-300 (622)
59 2z66_A Variable lymphocyte rec 99.8 3.9E-19 1.3E-23 189.5 14.6 239 448-743 12-259 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-18 1.2E-22 197.6 21.6 262 444-825 41-303 (622)
61 3zyj_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 192.2 20.9 237 513-842 51-291 (440)
62 2z66_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 187.2 15.0 64 774-843 197-261 (306)
63 3zyi_A Leucine-rich repeat-con 99.8 3.1E-18 1.1E-22 193.1 20.5 237 513-842 62-302 (452)
64 3zyj_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 192.0 17.0 191 447-668 47-243 (440)
65 3zyi_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 192.7 17.0 190 447-668 58-254 (452)
66 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.1E-23 181.7 13.6 222 446-724 14-239 (285)
67 2p1m_B Transport inhibitor res 99.8 1.8E-20 6.1E-25 219.9 -3.4 381 442-870 104-518 (594)
68 3ogk_B Coronatine-insensitive 99.8 9.5E-20 3.3E-24 213.6 2.8 378 443-867 138-547 (592)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-19 5.5E-24 193.2 2.7 235 496-843 10-250 (317)
70 3o53_A Protein LRIM1, AGAP0063 99.7 6.7E-19 2.3E-23 188.4 5.5 86 487-587 25-111 (317)
71 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.5E-23 184.4 6.1 35 806-842 274-308 (312)
72 1wwl_A Monocyte differentiatio 99.7 9.3E-19 3.2E-23 186.8 3.2 198 526-744 93-308 (312)
73 3oja_A Leucine-rich immune mol 99.7 8.6E-18 3E-22 190.4 10.3 239 519-865 21-269 (487)
74 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.9E-21 168.4 18.1 90 513-604 19-110 (285)
75 3oja_A Leucine-rich immune mol 99.7 4.1E-17 1.4E-21 184.8 12.0 214 467-745 35-250 (487)
76 2p1m_B Transport inhibitor res 99.7 6.1E-19 2.1E-23 206.9 -3.9 357 463-870 102-493 (594)
77 2z62_A TOLL-like receptor 4, v 99.7 7.6E-16 2.6E-20 161.2 17.8 148 513-724 15-163 (276)
78 1p9a_G Platelet glycoprotein I 99.7 3.9E-16 1.3E-20 164.1 15.1 142 444-604 11-153 (290)
79 2ca6_A RAN GTPase-activating p 99.6 2.1E-17 7E-22 182.3 1.7 242 455-724 21-317 (386)
80 2z62_A TOLL-like receptor 4, v 99.6 5.7E-16 2E-20 162.2 11.0 216 454-727 18-241 (276)
81 3rfs_A Internalin B, repeat mo 99.6 1.8E-15 6.3E-20 157.7 14.6 63 524-587 59-121 (272)
82 2ast_B S-phase kinase-associat 99.6 5.8E-17 2E-21 175.2 2.9 254 467-827 48-314 (336)
83 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.5E-20 161.8 13.1 54 688-743 174-228 (308)
84 1p9a_G Platelet glycoprotein I 99.6 2.5E-15 8.4E-20 158.0 14.7 123 462-604 6-129 (290)
85 2xwt_C Thyrotropin receptor; s 99.6 8.2E-15 2.8E-19 149.7 16.9 68 517-587 23-93 (239)
86 2o6q_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 156.3 13.5 193 445-668 18-217 (270)
87 2o6q_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 152.5 16.8 174 496-743 37-216 (270)
88 4ay9_X Follicle-stimulating ho 99.6 2.6E-14 9E-19 154.9 20.4 102 710-840 154-256 (350)
89 1h6u_A Internalin H; cell adhe 99.6 9.3E-15 3.2E-19 155.2 15.2 138 443-604 41-178 (308)
90 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.3E-19 156.7 15.4 229 513-816 17-256 (350)
91 2xwt_C Thyrotropin receptor; s 99.6 6E-15 2.1E-19 150.7 10.9 121 467-604 32-161 (239)
92 4glp_A Monocyte differentiatio 99.6 2.3E-14 8E-19 152.5 15.7 229 465-744 63-306 (310)
93 3rfs_A Internalin B, repeat mo 99.6 1.7E-14 5.9E-19 150.3 13.5 125 462-604 37-162 (272)
94 2ca6_A RAN GTPase-activating p 99.5 4.1E-16 1.4E-20 171.9 0.2 233 490-744 26-315 (386)
95 2ast_B S-phase kinase-associat 99.5 3.4E-15 1.2E-19 161.3 5.0 148 443-604 70-227 (336)
96 4glp_A Monocyte differentiatio 99.5 3.5E-14 1.2E-18 151.2 12.5 144 443-598 91-247 (310)
97 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 142.3 15.7 97 497-604 15-112 (251)
98 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 142.5 12.7 146 443-604 35-184 (251)
99 3goz_A Leucine-rich repeat-con 99.5 5.8E-15 2E-19 161.0 3.0 124 450-588 5-151 (362)
100 1h6t_A Internalin B; cell adhe 99.5 8.7E-14 3E-18 146.3 10.8 71 513-587 54-124 (291)
101 3cvr_A Invasion plasmid antige 99.5 1.8E-13 6.2E-18 156.0 13.8 188 444-727 60-247 (571)
102 1h6t_A Internalin B; cell adhe 99.4 4.6E-13 1.6E-17 140.8 14.1 138 443-604 46-183 (291)
103 4ezg_A Putative uncharacterize 99.4 1E-13 3.6E-18 136.7 8.6 14 708-721 179-192 (197)
104 2v9t_B SLIT homolog 2 protein 99.4 3.6E-13 1.2E-17 135.1 12.1 141 447-604 15-157 (220)
105 1m9s_A Internalin B; cell inva 99.4 2E-13 6.9E-18 157.6 11.5 161 513-724 51-211 (605)
106 3goz_A Leucine-rich repeat-con 99.4 7.1E-14 2.4E-18 152.3 6.6 240 442-724 21-298 (362)
107 4ezg_A Putative uncharacterize 99.4 4.2E-13 1.5E-17 132.3 11.2 142 442-604 43-186 (197)
108 4b8c_D Glucose-repressible alc 99.4 3.4E-13 1.2E-17 159.9 12.2 150 442-604 172-321 (727)
109 2v70_A SLIT-2, SLIT homolog 2 99.4 6.3E-13 2.1E-17 133.4 12.2 142 447-604 15-158 (220)
110 2o6s_A Variable lymphocyte rec 99.4 4.5E-13 1.5E-17 133.5 10.8 138 449-604 13-153 (208)
111 3e6j_A Variable lymphocyte rec 99.4 8.3E-13 2.9E-17 133.5 12.6 140 447-604 23-164 (229)
112 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4E-17 149.4 13.9 179 497-748 60-246 (571)
113 1xeu_A Internalin C; cellular 99.4 2.9E-13 9.9E-18 139.9 7.7 81 494-587 17-97 (263)
114 1m9s_A Internalin B; cell inva 99.4 8.9E-13 3E-17 152.2 11.4 161 443-637 43-206 (605)
115 3e6j_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 130.1 11.4 132 441-588 38-172 (229)
116 1xeu_A Internalin C; cellular 99.3 4E-12 1.4E-16 131.4 12.8 139 442-605 40-178 (263)
117 2ell_A Acidic leucine-rich nuc 99.3 1.7E-12 5.9E-17 124.3 8.0 128 442-587 23-159 (168)
118 1dce_A Protein (RAB geranylger 99.3 5.9E-14 2E-18 161.1 -3.1 176 442-637 348-542 (567)
119 2v70_A SLIT-2, SLIT homolog 2 99.3 4.2E-12 1.5E-16 127.3 9.9 132 442-588 31-166 (220)
120 2v9t_B SLIT homolog 2 protein 99.3 4.8E-12 1.6E-16 126.9 10.3 131 442-587 31-164 (220)
121 2o6s_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 124.6 11.5 140 442-604 27-170 (208)
122 2xot_A Amphoterin-induced prot 99.3 5.2E-12 1.8E-16 137.3 10.9 90 513-604 26-117 (361)
123 1dce_A Protein (RAB geranylger 99.3 1.2E-13 4.2E-18 158.4 -2.3 201 463-739 346-567 (567)
124 2ell_A Acidic leucine-rich nuc 99.3 6E-12 2.1E-16 120.5 7.7 125 464-605 22-153 (168)
125 2je0_A Acidic leucine-rich nuc 99.3 4.2E-12 1.4E-16 118.8 6.2 65 522-587 58-125 (149)
126 2xot_A Amphoterin-induced prot 99.2 1.6E-11 5.5E-16 133.4 11.5 140 447-604 22-168 (361)
127 1w8a_A SLIT protein; signaling 99.2 1.5E-11 5E-16 120.5 8.9 126 446-588 11-139 (192)
128 2je0_A Acidic leucine-rich nuc 99.2 7.2E-12 2.5E-16 117.2 5.3 124 442-583 16-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.3E-16 119.2 6.8 125 461-604 14-145 (176)
130 4b8c_D Glucose-repressible alc 99.2 8.4E-12 2.9E-16 147.9 6.6 120 459-595 217-336 (727)
131 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 117.5 9.2 99 497-604 30-131 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.2 2.8E-11 9.4E-16 116.8 7.3 127 442-587 18-152 (176)
133 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.2E-15 113.9 9.9 120 447-585 14-136 (193)
134 2wfh_A SLIT homolog 2 protein 99.1 1.6E-10 5.5E-15 113.0 10.7 90 513-604 18-107 (193)
135 2o6r_A Variable lymphocyte rec 99.1 1.6E-10 5.4E-15 111.5 10.2 126 446-589 10-138 (177)
136 3sb4_A Hypothetical leucine ri 99.1 1.1E-09 3.6E-14 117.4 15.8 119 465-604 24-153 (329)
137 1ds9_A Outer arm dynein; leuci 99.1 2.1E-12 7.3E-17 127.3 -6.3 119 455-592 37-157 (198)
138 1ds9_A Outer arm dynein; leuci 99.0 5.4E-12 1.8E-16 124.4 -6.4 101 491-604 43-145 (198)
139 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.3E-14 103.5 10.3 99 495-604 27-129 (177)
140 1w5s_A Origin recognition comp 98.9 1.6E-09 5.6E-14 120.1 9.9 233 123-368 21-337 (412)
141 3g39_A Variable lymphocyte rec 98.9 2.6E-09 8.8E-14 102.0 9.8 89 513-604 17-107 (170)
142 2r9u_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 100.8 9.9 88 513-604 20-110 (174)
143 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 102.3 7.4 82 496-587 33-117 (174)
144 2fna_A Conserved hypothetical 98.8 9.6E-09 3.3E-13 111.4 11.1 161 122-301 11-255 (357)
145 2qen_A Walker-type ATPase; unk 98.8 8.4E-09 2.9E-13 111.5 9.9 162 122-299 10-249 (350)
146 3g39_A Variable lymphocyte rec 98.8 7.2E-09 2.5E-13 98.9 7.7 82 496-587 30-114 (170)
147 1njg_A DNA polymerase III subu 98.7 3.9E-08 1.3E-12 100.2 11.8 170 124-299 23-231 (250)
148 3sb4_A Hypothetical leucine ri 98.7 2E-08 6.9E-13 107.4 9.2 73 527-604 48-129 (329)
149 4fdw_A Leucine rich hypothetic 98.7 1.3E-06 4.5E-11 95.4 21.3 103 487-604 127-231 (401)
150 2qby_B CDC6 homolog 3, cell di 98.6 1.1E-07 3.7E-12 104.2 11.0 211 124-352 20-295 (384)
151 2chg_A Replication factor C sm 98.6 1.3E-07 4.4E-12 94.8 10.3 164 124-295 17-203 (226)
152 4fdw_A Leucine rich hypothetic 98.6 3E-07 1E-11 100.5 13.5 224 459-722 129-357 (401)
153 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.9E-12 102.4 10.0 85 492-586 27-114 (347)
154 4fs7_A Uncharacterized protein 98.6 2.2E-06 7.7E-11 93.9 19.8 309 459-840 64-376 (394)
155 2v1u_A Cell division control p 98.5 2.2E-07 7.6E-12 101.8 11.3 212 123-351 18-300 (387)
156 2qby_A CDC6 homolog 1, cell di 98.5 1.2E-07 4.3E-12 103.8 8.9 167 123-293 19-242 (386)
157 3un9_A NLR family member X1; l 98.5 1.3E-08 4.5E-13 110.2 -1.4 137 443-588 72-224 (372)
158 4fs7_A Uncharacterized protein 98.4 1.4E-05 4.9E-10 87.4 21.7 315 443-835 71-393 (394)
159 3qfl_A MLA10; coiled-coil, (CC 98.4 2.6E-07 9E-12 80.4 6.0 31 3-33 53-83 (115)
160 2ifg_A High affinity nerve gro 98.4 3.9E-07 1.3E-11 98.2 8.4 101 448-564 13-116 (347)
161 1fnn_A CDC6P, cell division co 98.4 9.3E-07 3.2E-11 96.9 10.9 169 124-294 17-245 (389)
162 1sxj_B Activator 1 37 kDa subu 98.3 1E-06 3.5E-11 93.7 8.1 166 124-297 21-211 (323)
163 3un9_A NLR family member X1; l 98.2 4.8E-07 1.6E-11 97.9 4.2 140 442-590 100-254 (372)
164 1iqp_A RFCS; clamp loader, ext 98.1 3.5E-06 1.2E-10 89.8 8.1 166 124-297 25-213 (327)
165 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.7E-11 82.5 2.7 90 775-873 60-154 (176)
166 4gt6_A Cell surface protein; l 98.1 0.00015 5.2E-09 79.2 19.9 111 460-585 57-170 (394)
167 2ra8_A Uncharacterized protein 98.1 1.4E-06 4.9E-11 93.3 3.5 59 523-583 167-227 (362)
168 1hqc_A RUVB; extended AAA-ATPa 98.0 6.2E-06 2.1E-10 87.7 7.8 169 124-298 12-213 (324)
169 2ra8_A Uncharacterized protein 98.0 5.1E-06 1.7E-10 89.0 6.1 61 542-605 163-225 (362)
170 1io0_A Tropomodulin; LRR prote 97.9 4.3E-06 1.5E-10 80.6 3.4 122 460-587 30-163 (185)
171 4gt6_A Cell surface protein; l 97.9 0.00023 7.8E-09 77.7 17.2 142 445-604 66-210 (394)
172 1jbk_A CLPB protein; beta barr 97.9 3.9E-05 1.3E-09 74.3 9.5 45 124-174 22-66 (195)
173 1jr3_A DNA polymerase III subu 97.8 2.7E-05 9.4E-10 84.5 8.4 168 124-296 16-221 (373)
174 3e4g_A ATP synthase subunit S, 97.8 5.4E-06 1.9E-10 77.7 2.2 84 773-862 82-171 (176)
175 1io0_A Tropomodulin; LRR prote 97.8 4.8E-06 1.7E-10 80.2 1.5 100 485-588 25-136 (185)
176 3bos_A Putative DNA replicatio 97.8 1.6E-05 5.5E-10 80.3 5.3 143 150-294 51-215 (242)
177 3n70_A Transport activator; si 97.8 2.7E-05 9.2E-10 71.6 6.3 106 125-239 2-115 (145)
178 3rw6_A Nuclear RNA export fact 97.7 9.9E-06 3.4E-10 82.1 2.2 37 524-561 192-230 (267)
179 3rw6_A Nuclear RNA export fact 97.6 4.2E-05 1.5E-09 77.4 5.8 81 525-607 167-259 (267)
180 4h09_A Hypothetical leucine ri 97.6 0.0013 4.5E-08 71.2 17.9 59 773-839 283-342 (379)
181 2chq_A Replication factor C sm 97.6 4.8E-05 1.6E-09 80.5 6.0 161 124-294 17-202 (319)
182 3co5_A Putative two-component 97.5 4.7E-05 1.6E-09 69.7 3.8 102 125-238 5-114 (143)
183 2p65_A Hypothetical protein PF 97.4 0.00027 9.4E-09 67.8 7.9 44 124-173 22-65 (187)
184 2w58_A DNAI, primosome compone 97.4 0.00025 8.6E-09 69.2 6.9 86 152-239 55-158 (202)
185 1sxj_D Activator 1 41 kDa subu 97.3 0.00029 9.7E-09 75.7 7.5 166 124-295 37-234 (353)
186 3pfi_A Holliday junction ATP-d 97.3 9.2E-05 3.2E-09 79.0 3.3 163 124-293 29-224 (338)
187 3pvs_A Replication-associated 97.3 0.00073 2.5E-08 74.3 10.6 157 124-293 26-212 (447)
188 3te6_A Regulatory protein SIR3 97.2 0.00046 1.6E-08 71.7 7.1 78 125-206 21-105 (318)
189 3ec2_A DNA replication protein 97.2 0.00031 1E-08 67.2 5.3 88 151-239 38-142 (180)
190 3syl_A Protein CBBX; photosynt 97.2 0.00077 2.6E-08 70.8 8.8 137 125-261 32-208 (309)
191 2z4s_A Chromosomal replication 97.1 0.00031 1.1E-08 77.4 5.5 108 151-262 130-268 (440)
192 1d2n_A N-ethylmaleimide-sensit 97.1 0.0019 6.4E-08 66.3 10.1 47 124-173 33-86 (272)
193 3h4m_A Proteasome-activating n 97.0 0.00062 2.1E-08 70.5 6.3 51 123-173 16-73 (285)
194 3u61_B DNA polymerase accessor 97.0 0.00071 2.4E-08 71.6 6.4 124 124-261 26-169 (324)
195 1sxj_A Activator 1 95 kDa subu 97.0 0.0018 6E-08 73.2 10.0 164 124-298 39-255 (516)
196 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0025 8.7E-08 64.9 10.2 50 124-173 6-61 (262)
197 1a5t_A Delta prime, HOLB; zinc 97.0 0.0031 1.1E-07 66.8 10.9 157 130-296 8-205 (334)
198 1sxj_E Activator 1 40 kDa subu 96.9 0.00099 3.4E-08 71.4 7.0 166 124-294 14-235 (354)
199 1l8q_A Chromosomal replication 96.9 0.0016 5.4E-08 68.8 8.3 107 151-262 37-171 (324)
200 4h09_A Hypothetical leucine ri 96.9 0.016 5.6E-07 62.4 16.6 109 685-823 238-348 (379)
201 3uk6_A RUVB-like 2; hexameric 96.8 0.003 1E-07 68.0 9.9 47 124-174 44-93 (368)
202 2bjv_A PSP operon transcriptio 96.8 0.003 1E-07 64.5 9.2 47 124-174 6-52 (265)
203 2kjq_A DNAA-related protein; s 96.8 0.00055 1.9E-08 62.8 2.7 81 152-239 37-124 (149)
204 2gno_A DNA polymerase III, gam 96.6 0.0035 1.2E-07 65.1 8.0 127 128-262 1-144 (305)
205 1sxj_C Activator 1 40 kDa subu 96.5 0.0036 1.2E-07 66.5 7.1 158 124-291 25-207 (340)
206 1ojl_A Transcriptional regulat 96.3 0.0049 1.7E-07 64.1 6.5 46 124-173 2-47 (304)
207 4fcw_A Chaperone protein CLPB; 96.2 0.005 1.7E-07 64.5 6.6 49 125-173 18-69 (311)
208 1ofh_A ATP-dependent HSL prote 96.2 0.015 5.1E-07 60.7 9.8 50 124-173 15-72 (310)
209 3pxi_A Negative regulator of g 96.1 0.0086 3E-07 71.1 8.5 113 124-238 491-628 (758)
210 1qvr_A CLPB protein; coiled co 96.0 0.011 3.7E-07 71.2 8.4 44 124-173 170-213 (854)
211 3eie_A Vacuolar protein sortin 95.9 0.0091 3.1E-07 62.8 6.6 50 124-173 18-73 (322)
212 4b4t_L 26S protease subunit RP 95.8 0.029 9.8E-07 60.8 9.9 50 124-173 181-237 (437)
213 2qgz_A Helicase loader, putati 95.7 0.0086 2.9E-07 62.3 5.3 38 151-190 152-190 (308)
214 4b4t_J 26S protease regulatory 95.7 0.023 7.7E-07 60.6 8.3 50 124-173 148-204 (405)
215 3pxg_A Negative regulator of g 95.5 0.0073 2.5E-07 67.1 4.1 44 124-173 180-223 (468)
216 4b4t_M 26S protease regulatory 95.5 0.029 9.8E-07 60.7 8.6 50 124-173 181-237 (434)
217 1rz3_A Hypothetical protein rb 95.4 0.014 5E-07 56.4 5.2 42 129-173 3-44 (201)
218 3cf0_A Transitional endoplasmi 95.1 0.012 4.1E-07 61.2 3.8 50 124-173 15-71 (301)
219 3b9p_A CG5977-PA, isoform A; A 95.0 0.017 5.8E-07 59.9 4.6 50 124-173 21-76 (297)
220 3d8b_A Fidgetin-like protein 1 94.9 0.015 5E-07 62.1 3.9 50 124-173 84-139 (357)
221 3rfe_A Platelet glycoprotein I 94.8 0.036 1.2E-06 49.2 5.5 48 513-562 16-66 (130)
222 1qvr_A CLPB protein; coiled co 94.7 0.027 9.4E-07 67.6 6.1 49 125-173 559-610 (854)
223 2ga8_A Hypothetical 39.9 kDa p 94.6 0.025 8.7E-07 59.0 4.8 45 127-173 2-46 (359)
224 3c8u_A Fructokinase; YP_612366 94.5 0.025 8.5E-07 55.1 4.2 37 133-173 8-44 (208)
225 3lw7_A Adenylate kinase relate 94.5 0.017 5.7E-07 54.4 2.9 20 152-171 2-21 (179)
226 1in4_A RUVB, holliday junction 94.5 0.014 4.6E-07 61.8 2.4 49 124-173 25-73 (334)
227 1zp6_A Hypothetical protein AT 94.4 0.022 7.5E-07 54.6 3.5 24 151-174 9-32 (191)
228 1pgv_A TMD-1, tropomodulin TMD 94.3 0.032 1.1E-06 53.1 4.4 115 463-585 38-167 (197)
229 3kb2_A SPBC2 prophage-derived 94.3 0.019 6.6E-07 53.8 2.8 22 152-173 2-23 (173)
230 3pxi_A Negative regulator of g 94.2 0.024 8.2E-07 67.3 4.1 44 124-173 180-223 (758)
231 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.038 1.3E-06 57.9 5.2 51 123-173 11-67 (322)
232 3vaa_A Shikimate kinase, SK; s 94.2 0.021 7.3E-07 55.1 3.0 23 151-173 25-47 (199)
233 1qhx_A CPT, protein (chloramph 94.2 0.021 7.1E-07 54.0 2.8 22 152-173 4-25 (178)
234 1odf_A YGR205W, hypothetical 3 94.2 0.031 1.1E-06 57.4 4.2 25 149-173 29-53 (290)
235 1lv7_A FTSH; alpha/beta domain 94.1 0.027 9.1E-07 57.0 3.7 50 124-173 12-67 (257)
236 1ly1_A Polynucleotide kinase; 94.0 0.026 8.9E-07 53.4 3.2 22 152-173 3-24 (181)
237 2r44_A Uncharacterized protein 94.0 0.031 1.1E-06 58.9 4.0 42 124-173 27-68 (331)
238 1kgd_A CASK, peripheral plasma 94.0 0.026 8.9E-07 53.5 3.0 22 152-173 6-27 (180)
239 2r62_A Cell division protease 93.9 0.024 8.1E-07 57.8 2.8 50 124-173 11-66 (268)
240 3vfd_A Spastin; ATPase, microt 93.9 0.03 1E-06 60.5 3.7 50 124-173 115-170 (389)
241 1kag_A SKI, shikimate kinase I 93.8 0.022 7.5E-07 53.5 2.2 22 152-173 5-26 (173)
242 1r6b_X CLPA protein; AAA+, N-t 93.8 0.037 1.3E-06 65.7 4.6 44 124-173 186-229 (758)
243 2qp9_X Vacuolar protein sortin 93.8 0.04 1.4E-06 58.6 4.4 50 124-173 51-106 (355)
244 3trf_A Shikimate kinase, SK; a 93.8 0.028 9.5E-07 53.5 2.8 23 151-173 5-27 (185)
245 3uie_A Adenylyl-sulfate kinase 93.8 0.037 1.3E-06 53.4 3.7 24 150-173 24-47 (200)
246 3rfe_A Platelet glycoprotein I 93.7 0.087 3E-06 46.6 5.7 54 531-587 11-67 (130)
247 3tqc_A Pantothenate kinase; bi 93.7 0.051 1.7E-06 56.4 4.8 45 127-173 70-114 (321)
248 3fwy_A Light-independent proto 93.7 0.035 1.2E-06 57.7 3.5 23 150-172 47-69 (314)
249 1zuh_A Shikimate kinase; alpha 93.7 0.03 1E-06 52.3 2.8 24 150-173 6-29 (168)
250 4gp7_A Metallophosphoesterase; 93.6 0.036 1.2E-06 52.0 3.2 23 151-173 9-31 (171)
251 3hws_A ATP-dependent CLP prote 93.6 0.04 1.4E-06 59.0 3.9 49 125-173 16-73 (363)
252 1knq_A Gluconate kinase; ALFA/ 93.6 0.037 1.3E-06 52.0 3.3 24 150-173 7-30 (175)
253 1uf9_A TT1252 protein; P-loop, 93.6 0.04 1.4E-06 53.2 3.6 25 149-173 6-30 (203)
254 1nks_A Adenylate kinase; therm 93.6 0.037 1.2E-06 53.0 3.3 22 152-173 2-23 (194)
255 1xjc_A MOBB protein homolog; s 93.6 0.049 1.7E-06 50.5 4.0 24 150-173 3-26 (169)
256 1gvn_B Zeta; postsegregational 93.6 0.053 1.8E-06 55.6 4.7 41 132-173 15-55 (287)
257 2qt1_A Nicotinamide riboside k 93.5 0.045 1.5E-06 53.2 3.9 24 150-173 20-43 (207)
258 2p5t_B PEZT; postsegregational 93.5 0.048 1.7E-06 54.9 4.2 42 131-173 13-54 (253)
259 4b4t_K 26S protease regulatory 93.5 0.05 1.7E-06 58.8 4.4 50 124-173 172-228 (428)
260 2rhm_A Putative kinase; P-loop 93.5 0.043 1.5E-06 52.5 3.6 24 150-173 4-27 (193)
261 3nbx_X ATPase RAVA; AAA+ ATPas 93.5 0.04 1.4E-06 61.1 3.7 42 125-174 23-64 (500)
262 2bdt_A BH3686; alpha-beta prot 93.4 0.041 1.4E-06 52.5 3.3 22 152-173 3-24 (189)
263 3t61_A Gluconokinase; PSI-biol 93.4 0.027 9.3E-07 54.5 2.1 23 151-173 18-40 (202)
264 3asz_A Uridine kinase; cytidin 93.4 0.046 1.6E-06 53.3 3.7 24 150-173 5-28 (211)
265 1r6b_X CLPA protein; AAA+, N-t 93.4 0.077 2.6E-06 63.0 6.3 50 124-173 458-510 (758)
266 1pgv_A TMD-1, tropomodulin TMD 93.4 0.05 1.7E-06 51.8 3.7 96 486-585 31-136 (197)
267 4eun_A Thermoresistant glucoki 93.4 0.039 1.3E-06 53.3 3.1 24 150-173 28-51 (200)
268 3t15_A Ribulose bisphosphate c 93.4 0.058 2E-06 55.7 4.6 24 150-173 35-58 (293)
269 3tr0_A Guanylate kinase, GMP k 93.3 0.039 1.3E-06 53.5 3.0 22 152-173 8-29 (205)
270 2c9o_A RUVB-like 1; hexameric 93.2 0.05 1.7E-06 60.1 4.1 49 124-173 37-85 (456)
271 2if2_A Dephospho-COA kinase; a 93.2 0.042 1.4E-06 53.2 3.1 22 152-173 2-23 (204)
272 1uj2_A Uridine-cytidine kinase 93.2 0.044 1.5E-06 55.2 3.4 24 150-173 21-44 (252)
273 3iij_A Coilin-interacting nucl 93.2 0.034 1.2E-06 52.6 2.4 23 151-173 11-33 (180)
274 3hu3_A Transitional endoplasmi 93.2 0.044 1.5E-06 60.8 3.6 50 124-173 204-260 (489)
275 2ze6_A Isopentenyl transferase 93.2 0.043 1.5E-06 55.2 3.2 22 152-173 2-23 (253)
276 1ukz_A Uridylate kinase; trans 93.2 0.05 1.7E-06 52.6 3.6 24 150-173 14-37 (203)
277 2jaq_A Deoxyguanosine kinase; 93.2 0.041 1.4E-06 53.2 2.9 21 153-173 2-22 (205)
278 1kht_A Adenylate kinase; phosp 93.2 0.04 1.4E-06 52.6 2.8 22 152-173 4-25 (192)
279 2zan_A Vacuolar protein sortin 93.1 0.071 2.4E-06 58.6 5.1 50 124-173 134-189 (444)
280 3a00_A Guanylate kinase, GMP k 93.1 0.036 1.2E-06 52.8 2.4 22 152-173 2-23 (186)
281 1via_A Shikimate kinase; struc 93.0 0.036 1.2E-06 52.2 2.2 22 152-173 5-26 (175)
282 1jjv_A Dephospho-COA kinase; P 93.0 0.051 1.7E-06 52.7 3.4 22 152-173 3-24 (206)
283 1y63_A LMAJ004144AAA protein; 93.0 0.048 1.6E-06 51.8 3.1 24 150-173 9-32 (184)
284 1ye8_A Protein THEP1, hypothet 93.0 0.05 1.7E-06 51.3 3.1 22 153-174 2-23 (178)
285 3tau_A Guanylate kinase, GMP k 93.0 0.051 1.8E-06 52.8 3.3 24 150-173 7-30 (208)
286 2c95_A Adenylate kinase 1; tra 92.9 0.051 1.8E-06 52.1 3.2 23 151-173 9-31 (196)
287 2cvh_A DNA repair and recombin 92.9 0.094 3.2E-06 51.3 5.2 43 151-198 20-62 (220)
288 2qor_A Guanylate kinase; phosp 92.9 0.038 1.3E-06 53.6 2.2 24 150-173 11-34 (204)
289 2yvu_A Probable adenylyl-sulfa 92.9 0.053 1.8E-06 51.6 3.2 24 150-173 12-35 (186)
290 1cke_A CK, MSSA, protein (cyti 92.9 0.048 1.6E-06 53.8 3.0 22 152-173 6-27 (227)
291 1tev_A UMP-CMP kinase; ploop, 92.9 0.053 1.8E-06 51.9 3.2 23 151-173 3-25 (196)
292 2j41_A Guanylate kinase; GMP, 92.8 0.056 1.9E-06 52.4 3.3 23 151-173 6-28 (207)
293 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.056 1.9E-06 54.6 3.4 23 151-173 4-26 (260)
294 1lvg_A Guanylate kinase, GMP k 92.7 0.045 1.5E-06 52.7 2.4 22 152-173 5-26 (198)
295 2iyv_A Shikimate kinase, SK; t 92.7 0.04 1.4E-06 52.3 2.0 22 152-173 3-24 (184)
296 2bwj_A Adenylate kinase 5; pho 92.7 0.055 1.9E-06 52.1 3.0 22 152-173 13-34 (199)
297 3aez_A Pantothenate kinase; tr 92.6 0.065 2.2E-06 55.6 3.6 24 150-173 89-112 (312)
298 2bbw_A Adenylate kinase 4, AK4 92.6 0.058 2E-06 54.0 3.2 23 151-173 27-49 (246)
299 3cm0_A Adenylate kinase; ATP-b 92.6 0.06 2.1E-06 51.1 3.1 22 152-173 5-26 (186)
300 1qf9_A UMP/CMP kinase, protein 92.6 0.064 2.2E-06 51.2 3.3 23 151-173 6-28 (194)
301 1htw_A HI0065; nucleotide-bind 92.5 0.07 2.4E-06 49.1 3.3 23 151-173 33-55 (158)
302 1e6c_A Shikimate kinase; phosp 92.5 0.047 1.6E-06 51.2 2.2 22 152-173 3-24 (173)
303 2grj_A Dephospho-COA kinase; T 92.5 0.075 2.6E-06 50.7 3.6 25 149-173 10-34 (192)
304 4b4t_H 26S protease regulatory 92.4 0.067 2.3E-06 57.8 3.6 50 124-173 209-265 (467)
305 2f1r_A Molybdopterin-guanine d 92.4 0.052 1.8E-06 50.7 2.4 22 152-173 3-24 (171)
306 2plr_A DTMP kinase, probable t 92.4 0.064 2.2E-06 52.2 3.2 22 152-173 5-26 (213)
307 3ney_A 55 kDa erythrocyte memb 92.4 0.061 2.1E-06 51.3 2.8 24 150-173 18-41 (197)
308 1n0w_A DNA repair protein RAD5 92.4 0.15 5.2E-06 50.6 6.0 48 151-198 24-75 (243)
309 1znw_A Guanylate kinase, GMP k 92.3 0.063 2.2E-06 52.1 3.0 23 151-173 20-42 (207)
310 2pt5_A Shikimate kinase, SK; a 92.3 0.065 2.2E-06 49.9 2.9 21 153-173 2-22 (168)
311 2hf9_A Probable hydrogenase ni 92.2 0.11 3.8E-06 51.1 4.7 25 150-174 37-61 (226)
312 2cdn_A Adenylate kinase; phosp 92.2 0.072 2.5E-06 51.4 3.2 24 150-173 19-42 (201)
313 1gtv_A TMK, thymidylate kinase 92.2 0.044 1.5E-06 53.5 1.7 21 153-173 2-22 (214)
314 1sq5_A Pantothenate kinase; P- 92.2 0.14 4.7E-06 53.2 5.5 24 150-173 79-102 (308)
315 4e22_A Cytidylate kinase; P-lo 92.2 0.069 2.4E-06 53.7 3.1 23 151-173 27-49 (252)
316 2jeo_A Uridine-cytidine kinase 92.2 0.081 2.8E-06 52.9 3.6 24 150-173 24-47 (245)
317 3umf_A Adenylate kinase; rossm 92.1 0.08 2.7E-06 51.5 3.4 25 149-173 27-51 (217)
318 3e70_C DPA, signal recognition 92.1 0.13 4.4E-06 53.6 5.2 25 149-173 127-151 (328)
319 2pbr_A DTMP kinase, thymidylat 92.1 0.069 2.4E-06 51.1 2.9 21 153-173 2-22 (195)
320 2f6r_A COA synthase, bifunctio 92.1 0.085 2.9E-06 53.9 3.7 23 150-172 74-96 (281)
321 1rj9_A FTSY, signal recognitio 92.1 0.073 2.5E-06 55.0 3.2 24 150-173 101-124 (304)
322 2wsm_A Hydrogenase expression/ 92.1 0.1 3.5E-06 51.1 4.2 39 129-173 14-52 (221)
323 2ce7_A Cell division protein F 92.1 0.078 2.7E-06 58.3 3.6 50 124-173 16-71 (476)
324 1nn5_A Similar to deoxythymidy 92.1 0.1 3.5E-06 50.8 4.2 23 151-173 9-31 (215)
325 1z6g_A Guanylate kinase; struc 92.0 0.06 2.1E-06 52.7 2.4 22 152-173 24-45 (218)
326 4a74_A DNA repair and recombin 92.0 0.2 6.7E-06 49.3 6.2 44 151-194 25-72 (231)
327 2vli_A Antibiotic resistance p 92.0 0.051 1.7E-06 51.5 1.8 23 151-173 5-27 (183)
328 2pez_A Bifunctional 3'-phospho 92.0 0.086 2.9E-06 49.7 3.4 24 150-173 4-27 (179)
329 2z0h_A DTMP kinase, thymidylat 91.9 0.2 6.8E-06 47.9 6.0 21 153-173 2-22 (197)
330 1ex7_A Guanylate kinase; subst 91.9 0.06 2.1E-06 51.0 2.1 22 152-173 2-23 (186)
331 1ypw_A Transitional endoplasmi 91.8 0.088 3E-06 62.5 3.9 51 123-173 203-260 (806)
332 2wwf_A Thymidilate kinase, put 91.8 0.08 2.7E-06 51.5 3.0 23 151-173 10-32 (212)
333 2px0_A Flagellar biosynthesis 91.8 0.089 3E-06 54.1 3.4 24 150-173 104-127 (296)
334 1um8_A ATP-dependent CLP prote 91.7 0.083 2.9E-06 56.7 3.3 50 124-173 21-94 (376)
335 1zd8_A GTP:AMP phosphotransfer 91.7 0.082 2.8E-06 52.1 3.0 23 151-173 7-29 (227)
336 4b4t_I 26S protease regulatory 91.7 0.085 2.9E-06 56.4 3.2 50 124-173 182-238 (437)
337 1aky_A Adenylate kinase; ATP:A 91.7 0.083 2.8E-06 51.8 3.0 23 151-173 4-26 (220)
338 3tlx_A Adenylate kinase 2; str 91.6 0.12 4.3E-06 51.4 4.3 24 150-173 28-51 (243)
339 2i3b_A HCR-ntpase, human cance 91.5 0.078 2.7E-06 50.5 2.5 22 153-174 3-24 (189)
340 1s96_A Guanylate kinase, GMP k 91.5 0.089 3E-06 51.4 3.0 23 151-173 16-38 (219)
341 3m6a_A ATP-dependent protease 91.5 0.088 3E-06 59.4 3.3 50 124-173 81-130 (543)
342 3nwj_A ATSK2; P loop, shikimat 91.5 0.071 2.4E-06 53.3 2.2 22 152-173 49-70 (250)
343 1m7g_A Adenylylsulfate kinase; 91.4 0.11 3.6E-06 50.6 3.4 24 150-173 24-47 (211)
344 3p32_A Probable GTPase RV1496/ 91.4 0.17 5.7E-06 53.8 5.1 37 133-173 65-101 (355)
345 3b9q_A Chloroplast SRP recepto 91.3 0.11 3.7E-06 53.6 3.5 24 150-173 99-122 (302)
346 1vht_A Dephospho-COA kinase; s 91.3 0.11 3.8E-06 50.8 3.5 23 151-173 4-26 (218)
347 2v54_A DTMP kinase, thymidylat 91.3 0.092 3.2E-06 50.7 2.8 22 152-173 5-26 (204)
348 2onk_A Molybdate/tungstate ABC 91.2 0.1 3.5E-06 51.8 3.1 23 150-173 24-46 (240)
349 3be4_A Adenylate kinase; malar 91.2 0.091 3.1E-06 51.4 2.7 22 152-173 6-27 (217)
350 1g8p_A Magnesium-chelatase 38 91.2 0.071 2.4E-06 56.6 2.1 44 124-173 24-67 (350)
351 3end_A Light-independent proto 91.2 0.11 3.8E-06 53.9 3.5 41 149-191 39-79 (307)
352 3d3q_A TRNA delta(2)-isopenten 91.2 0.1 3.6E-06 54.2 3.2 22 152-173 8-29 (340)
353 1np6_A Molybdopterin-guanine d 91.2 0.1 3.4E-06 48.9 2.8 24 150-173 5-28 (174)
354 1zak_A Adenylate kinase; ATP:A 91.1 0.092 3.2E-06 51.5 2.7 23 151-173 5-27 (222)
355 3tif_A Uncharacterized ABC tra 91.1 0.15 5.2E-06 50.4 4.2 22 152-173 32-53 (235)
356 2x8a_A Nuclear valosin-contain 91.1 0.091 3.1E-06 53.5 2.6 50 124-173 10-66 (274)
357 1ixz_A ATP-dependent metallopr 91.0 0.095 3.2E-06 52.7 2.7 51 124-174 16-72 (254)
358 3fb4_A Adenylate kinase; psych 91.0 0.1 3.6E-06 50.9 3.0 21 153-173 2-22 (216)
359 2xxa_A Signal recognition part 91.0 0.21 7.3E-06 54.2 5.6 41 133-173 79-122 (433)
360 2ehv_A Hypothetical protein PH 90.9 0.11 3.6E-06 52.1 3.0 22 152-173 31-52 (251)
361 2pcj_A ABC transporter, lipopr 90.9 0.11 3.8E-06 51.0 3.0 22 152-173 31-52 (224)
362 3gfo_A Cobalt import ATP-bindi 90.9 0.16 5.4E-06 51.5 4.2 33 152-187 35-67 (275)
363 3lnc_A Guanylate kinase, GMP k 90.9 0.077 2.6E-06 52.5 1.8 22 152-173 28-50 (231)
364 1vma_A Cell division protein F 90.9 0.14 4.6E-06 52.9 3.7 24 150-173 103-126 (306)
365 3dm5_A SRP54, signal recogniti 90.8 0.34 1.2E-05 52.4 6.9 24 150-173 99-122 (443)
366 3dl0_A Adenylate kinase; phosp 90.8 0.11 3.9E-06 50.6 3.0 21 153-173 2-22 (216)
367 3ake_A Cytidylate kinase; CMP 90.8 0.12 3.9E-06 50.1 3.0 21 153-173 4-24 (208)
368 2ged_A SR-beta, signal recogni 90.8 0.19 6.3E-06 47.9 4.4 25 150-174 47-71 (193)
369 3cf2_A TER ATPase, transitiona 90.7 0.25 8.7E-06 57.7 6.2 51 124-174 204-261 (806)
370 1b0u_A Histidine permease; ABC 90.7 0.17 5.8E-06 51.0 4.2 22 152-173 33-54 (262)
371 1g41_A Heat shock protein HSLU 90.6 0.18 6.2E-06 54.6 4.5 50 124-173 15-72 (444)
372 3r20_A Cytidylate kinase; stru 90.5 0.13 4.3E-06 50.7 3.0 23 151-173 9-31 (233)
373 1yrb_A ATP(GTP)binding protein 90.4 0.15 5.3E-06 51.4 3.7 24 150-173 13-36 (262)
374 2cbz_A Multidrug resistance-as 90.4 0.12 4.2E-06 51.2 2.8 22 152-173 32-53 (237)
375 2og2_A Putative signal recogni 90.3 0.15 5.1E-06 53.8 3.5 24 150-173 156-179 (359)
376 4g1u_C Hemin import ATP-bindin 90.3 0.2 6.8E-06 50.6 4.3 22 152-173 38-59 (266)
377 2z43_A DNA repair and recombin 90.3 0.32 1.1E-05 50.8 6.1 50 151-200 107-160 (324)
378 2ff7_A Alpha-hemolysin translo 90.3 0.2 6.7E-06 50.0 4.2 22 152-173 36-57 (247)
379 2dhr_A FTSH; AAA+ protein, hex 90.3 0.19 6.5E-06 55.6 4.4 52 123-174 30-87 (499)
380 3b85_A Phosphate starvation-in 90.3 0.1 3.5E-06 50.5 2.1 22 152-173 23-44 (208)
381 3a8t_A Adenylate isopentenyltr 90.3 0.17 5.8E-06 52.5 3.7 24 150-173 39-62 (339)
382 1zu4_A FTSY; GTPase, signal re 90.2 0.16 5.4E-06 52.9 3.5 25 149-173 103-127 (320)
383 4eaq_A DTMP kinase, thymidylat 90.2 0.24 8.3E-06 48.7 4.8 24 150-173 25-48 (229)
384 1iy2_A ATP-dependent metallopr 90.1 0.13 4.3E-06 52.6 2.7 52 123-174 39-96 (278)
385 1e4v_A Adenylate kinase; trans 90.1 0.15 5.1E-06 49.7 3.1 21 153-173 2-22 (214)
386 3crm_A TRNA delta(2)-isopenten 90.1 0.15 5.1E-06 52.7 3.1 22 152-173 6-27 (323)
387 1mv5_A LMRA, multidrug resista 90.1 0.15 5.1E-06 50.8 3.1 22 152-173 29-50 (243)
388 2pze_A Cystic fibrosis transme 90.0 0.14 4.7E-06 50.5 2.8 22 152-173 35-56 (229)
389 2i1q_A DNA repair and recombin 90.0 0.36 1.2E-05 50.4 6.2 51 151-201 98-162 (322)
390 1ji0_A ABC transporter; ATP bi 90.0 0.14 4.9E-06 50.8 2.9 22 152-173 33-54 (240)
391 2ixe_A Antigen peptide transpo 90.0 0.21 7.2E-06 50.6 4.2 22 152-173 46-67 (271)
392 1sgw_A Putative ABC transporte 90.0 0.12 4.2E-06 50.2 2.3 22 152-173 36-57 (214)
393 1oix_A RAS-related protein RAB 90.0 0.16 5.4E-06 48.4 3.1 24 151-174 29-52 (191)
394 2d2e_A SUFC protein; ABC-ATPas 90.0 0.15 5.3E-06 50.9 3.1 22 152-173 30-51 (250)
395 1jr3_D DNA polymerase III, del 89.9 1 3.5E-05 47.3 9.8 144 150-294 17-183 (343)
396 2olj_A Amino acid ABC transpor 89.9 0.15 5E-06 51.4 2.9 22 152-173 51-72 (263)
397 1g6h_A High-affinity branched- 89.9 0.15 5E-06 51.4 2.9 22 152-173 34-55 (257)
398 2xb4_A Adenylate kinase; ATP-b 89.8 0.15 5.2E-06 50.0 2.9 21 153-173 2-22 (223)
399 2zu0_C Probable ATP-dependent 89.7 0.16 5.6E-06 51.3 3.1 22 152-173 47-68 (267)
400 1ak2_A Adenylate kinase isoenz 89.7 0.17 5.7E-06 50.1 3.2 23 151-173 16-38 (233)
401 1vpl_A ABC transporter, ATP-bi 89.7 0.16 5.3E-06 51.0 2.9 22 152-173 42-63 (256)
402 1v5w_A DMC1, meiotic recombina 89.7 0.45 1.5E-05 50.1 6.6 51 150-200 121-175 (343)
403 1pzn_A RAD51, DNA repair and r 89.7 0.35 1.2E-05 51.1 5.7 48 150-197 130-181 (349)
404 1ls1_A Signal recognition part 89.6 0.18 6.2E-06 51.8 3.4 24 150-173 97-120 (295)
405 1cr0_A DNA primase/helicase; R 89.6 0.4 1.4E-05 49.3 6.1 38 152-191 36-74 (296)
406 2wji_A Ferrous iron transport 89.6 0.22 7.4E-06 46.1 3.7 23 152-174 4-26 (165)
407 3exa_A TRNA delta(2)-isopenten 89.6 0.17 5.9E-06 51.7 3.1 23 151-173 3-25 (322)
408 3hr8_A Protein RECA; alpha and 89.6 0.35 1.2E-05 50.9 5.6 44 151-196 61-104 (356)
409 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.21 7.3E-06 49.1 3.9 38 152-191 24-61 (235)
410 3kl4_A SRP54, signal recogniti 89.6 0.4 1.4E-05 51.8 6.2 24 150-173 96-119 (433)
411 2ghi_A Transport protein; mult 89.6 0.16 5.3E-06 51.2 2.8 22 152-173 47-68 (260)
412 2v3c_C SRP54, signal recogniti 89.5 0.19 6.5E-06 54.6 3.6 24 150-173 98-121 (432)
413 2j37_W Signal recognition part 89.5 0.32 1.1E-05 53.7 5.4 25 149-173 99-123 (504)
414 2dyk_A GTP-binding protein; GT 89.5 0.2 6.9E-06 45.8 3.4 23 152-174 2-24 (161)
415 3upu_A ATP-dependent DNA helic 89.5 0.62 2.1E-05 51.3 7.8 21 153-173 47-67 (459)
416 2qi9_C Vitamin B12 import ATP- 89.4 0.17 5.8E-06 50.5 2.9 22 152-173 27-48 (249)
417 2yhs_A FTSY, cell division pro 89.4 0.19 6.6E-06 54.9 3.5 24 150-173 292-315 (503)
418 2zej_A Dardarin, leucine-rich 89.3 0.17 5.7E-06 47.9 2.7 22 153-174 4-25 (184)
419 1tue_A Replication protein E1; 89.3 0.26 8.8E-06 46.9 3.8 23 151-173 58-80 (212)
420 2yz2_A Putative ABC transporte 89.2 0.18 6E-06 51.1 2.9 22 152-173 34-55 (266)
421 1ltq_A Polynucleotide kinase; 89.2 0.18 6.3E-06 52.0 3.2 22 152-173 3-24 (301)
422 2nq2_C Hypothetical ABC transp 89.2 0.18 6.1E-06 50.5 2.9 22 152-173 32-53 (253)
423 3nh6_A ATP-binding cassette SU 89.1 0.23 7.9E-06 51.1 3.7 22 152-173 81-102 (306)
424 2ihy_A ABC transporter, ATP-bi 89.1 0.18 6.2E-06 51.3 2.9 22 152-173 48-69 (279)
425 3sr0_A Adenylate kinase; phosp 89.0 0.2 6.7E-06 48.4 3.0 21 153-173 2-22 (206)
426 1cp2_A CP2, nitrogenase iron p 89.0 0.22 7.6E-06 50.4 3.5 22 152-173 2-23 (269)
427 2zr9_A Protein RECA, recombina 89.0 0.29 9.8E-06 51.6 4.4 43 151-195 61-103 (349)
428 1a7j_A Phosphoribulokinase; tr 88.9 0.1 3.5E-06 53.6 0.9 24 150-173 4-27 (290)
429 2afh_E Nitrogenase iron protei 88.9 0.23 8E-06 50.9 3.7 23 151-173 2-24 (289)
430 3k1j_A LON protease, ATP-depen 88.9 0.25 8.5E-06 56.7 4.2 42 124-173 41-82 (604)
431 2vp4_A Deoxynucleoside kinase; 88.9 0.18 6.1E-06 49.8 2.6 24 150-173 19-42 (230)
432 1q3t_A Cytidylate kinase; nucl 88.9 0.21 7.1E-06 49.5 3.1 25 149-173 14-38 (236)
433 2vhj_A Ntpase P4, P4; non- hyd 88.9 0.22 7.4E-06 51.2 3.2 22 152-173 124-145 (331)
434 2eyu_A Twitching motility prot 88.8 0.23 7.7E-06 50.0 3.3 23 151-173 25-47 (261)
435 4edh_A DTMP kinase, thymidylat 88.8 0.63 2.2E-05 45.1 6.4 23 151-173 6-28 (213)
436 2dr3_A UPF0273 protein PH0284; 88.8 0.31 1.1E-05 48.4 4.4 39 152-192 24-62 (247)
437 3foz_A TRNA delta(2)-isopenten 88.7 0.25 8.6E-06 50.4 3.6 24 150-173 9-32 (316)
438 2ce2_X GTPase HRAS; signaling 88.7 0.22 7.6E-06 45.6 3.0 22 153-174 5-26 (166)
439 1u94_A RECA protein, recombina 88.7 0.29 1E-05 51.6 4.3 44 151-196 63-106 (356)
440 2v9p_A Replication protein E1; 88.7 0.22 7.4E-06 51.2 3.1 23 151-173 126-148 (305)
441 2f9l_A RAB11B, member RAS onco 88.6 0.22 7.6E-06 47.7 3.1 24 151-174 5-28 (199)
442 2ocp_A DGK, deoxyguanosine kin 88.6 0.25 8.5E-06 49.1 3.5 22 152-173 3-24 (241)
443 3sop_A Neuronal-specific septi 88.6 0.23 7.9E-06 50.2 3.3 21 153-173 4-24 (270)
444 2wjg_A FEOB, ferrous iron tran 88.6 0.27 9.4E-06 46.4 3.7 24 151-174 7-30 (188)
445 3zvl_A Bifunctional polynucleo 88.6 0.21 7.2E-06 54.2 3.1 24 150-173 257-280 (416)
446 1nlf_A Regulatory protein REPA 88.5 0.21 7.3E-06 50.9 3.0 22 152-173 31-52 (279)
447 3con_A GTPase NRAS; structural 88.2 0.23 8E-06 47.0 2.9 23 152-174 22-44 (190)
448 2lkc_A Translation initiation 88.1 0.36 1.2E-05 45.0 4.1 25 150-174 7-31 (178)
449 1svm_A Large T antigen; AAA+ f 88.1 0.34 1.2E-05 51.4 4.3 24 150-173 168-191 (377)
450 2pjz_A Hypothetical protein ST 88.0 0.24 8.1E-06 49.9 2.9 22 152-173 31-52 (263)
451 3hjn_A DTMP kinase, thymidylat 88.0 0.59 2E-05 44.7 5.6 48 154-203 3-50 (197)
452 3kta_A Chromosome segregation 88.0 0.28 9.6E-06 46.2 3.3 22 152-173 27-48 (182)
453 2nzj_A GTP-binding protein REM 88.0 0.26 9E-06 45.8 3.1 24 151-174 4-27 (175)
454 1nij_A Hypothetical protein YJ 87.9 0.24 8.3E-06 51.5 3.0 25 150-174 3-27 (318)
455 2gj8_A MNME, tRNA modification 87.9 0.27 9.4E-06 45.8 3.1 23 152-174 5-27 (172)
456 2bbs_A Cystic fibrosis transme 87.9 0.25 8.4E-06 50.5 2.9 22 152-173 65-86 (290)
457 1z2a_A RAS-related protein RAB 87.6 0.34 1.2E-05 44.5 3.6 24 151-174 5-28 (168)
458 3lda_A DNA repair protein RAD5 87.6 0.59 2E-05 50.1 5.8 48 151-198 178-229 (400)
459 1u8z_A RAS-related protein RAL 87.5 0.28 9.5E-06 45.1 2.9 23 152-174 5-27 (168)
460 1svi_A GTP-binding protein YSX 87.5 0.36 1.2E-05 45.9 3.7 25 150-174 22-46 (195)
461 3bh0_A DNAB-like replicative h 87.4 0.61 2.1E-05 48.4 5.7 50 152-205 69-118 (315)
462 3eph_A TRNA isopentenyltransfe 87.3 0.31 1.1E-05 51.7 3.3 22 152-173 3-24 (409)
463 1m7b_A RND3/RHOE small GTP-bin 87.2 0.3 1E-05 46.0 3.0 24 151-174 7-30 (184)
464 2p67_A LAO/AO transport system 87.1 0.55 1.9E-05 49.4 5.2 24 150-173 55-78 (341)
465 1c1y_A RAS-related protein RAP 87.1 0.3 1E-05 44.9 2.9 22 153-174 5-26 (167)
466 1p5z_B DCK, deoxycytidine kina 87.1 0.22 7.4E-06 50.4 2.0 24 150-173 23-46 (263)
467 2qmh_A HPR kinase/phosphorylas 87.1 0.32 1.1E-05 46.0 3.0 22 152-173 35-56 (205)
468 2erx_A GTP-binding protein DI- 87.1 0.31 1E-05 45.1 2.9 22 153-174 5-26 (172)
469 1z08_A RAS-related protein RAB 87.1 0.35 1.2E-05 44.6 3.3 24 151-174 6-29 (170)
470 3q72_A GTP-binding protein RAD 87.1 0.31 1.1E-05 44.8 2.9 21 153-173 4-24 (166)
471 3lv8_A DTMP kinase, thymidylat 87.0 0.76 2.6E-05 45.2 5.8 52 151-203 27-78 (236)
472 1j8m_F SRP54, signal recogniti 87.0 0.24 8.2E-06 50.9 2.3 23 151-173 98-120 (297)
473 1tq4_A IIGP1, interferon-induc 87.0 0.35 1.2E-05 52.0 3.7 24 150-173 68-91 (413)
474 1fzq_A ADP-ribosylation factor 86.9 0.4 1.4E-05 45.1 3.6 25 150-174 15-39 (181)
475 1f6b_A SAR1; gtpases, N-termin 86.9 0.28 9.7E-06 46.9 2.7 23 152-174 26-48 (198)
476 1ek0_A Protein (GTP-binding pr 86.9 0.32 1.1E-05 44.9 2.9 22 153-174 5-26 (170)
477 1z0j_A RAB-22, RAS-related pro 86.9 0.32 1.1E-05 44.9 2.9 23 152-174 7-29 (170)
478 3tui_C Methionine import ATP-b 86.8 0.32 1.1E-05 51.1 3.1 22 152-173 55-76 (366)
479 1nrj_B SR-beta, signal recogni 86.7 0.36 1.2E-05 46.9 3.3 25 150-174 11-35 (218)
480 2cxx_A Probable GTP-binding pr 86.7 0.36 1.2E-05 45.6 3.2 22 153-174 3-24 (190)
481 3pqc_A Probable GTP-binding pr 86.6 0.42 1.4E-05 45.3 3.7 24 151-174 23-46 (195)
482 2fn4_A P23, RAS-related protei 86.6 0.47 1.6E-05 44.2 4.0 25 150-174 8-32 (181)
483 3ld9_A DTMP kinase, thymidylat 86.6 0.81 2.8E-05 44.5 5.7 24 150-173 20-43 (223)
484 1kao_A RAP2A; GTP-binding prot 86.6 0.34 1.1E-05 44.5 2.9 22 153-174 5-26 (167)
485 3fvq_A Fe(3+) IONS import ATP- 86.6 0.35 1.2E-05 50.8 3.3 22 152-173 31-52 (359)
486 3ihw_A Centg3; RAS, centaurin, 86.5 0.33 1.1E-05 45.9 2.8 23 152-174 21-43 (184)
487 1m2o_B GTP-binding protein SAR 86.5 0.35 1.2E-05 45.9 3.1 23 152-174 24-46 (190)
488 4tmk_A Protein (thymidylate ki 86.5 0.91 3.1E-05 43.9 6.0 51 152-204 4-55 (213)
489 2qm8_A GTPase/ATPase; G protei 86.5 0.6 2E-05 48.9 5.0 24 150-173 54-77 (337)
490 2www_A Methylmalonic aciduria 86.4 0.38 1.3E-05 50.8 3.5 24 150-173 73-96 (349)
491 1lw7_A Transcriptional regulat 86.4 0.37 1.3E-05 51.4 3.4 23 151-173 170-192 (365)
492 3t1o_A Gliding protein MGLA; G 86.4 0.32 1.1E-05 46.2 2.7 22 152-173 15-36 (198)
493 3c5c_A RAS-like protein 12; GD 86.4 0.34 1.2E-05 45.8 2.9 23 152-174 22-44 (187)
494 1g16_A RAS-related protein SEC 86.3 0.37 1.3E-05 44.4 3.0 23 152-174 4-26 (170)
495 3v9p_A DTMP kinase, thymidylat 86.3 0.6 2.1E-05 45.6 4.6 23 151-173 25-47 (227)
496 3tw8_B RAS-related protein RAB 86.3 0.33 1.1E-05 45.4 2.7 25 150-174 8-32 (181)
497 2qnr_A Septin-2, protein NEDD5 86.3 0.33 1.1E-05 50.1 2.9 23 150-173 18-40 (301)
498 3q85_A GTP-binding protein REM 86.2 0.47 1.6E-05 43.7 3.7 21 153-173 4-24 (169)
499 3llu_A RAS-related GTP-binding 86.2 0.38 1.3E-05 45.9 3.1 22 152-173 21-42 (196)
500 2r8r_A Sensor protein; KDPD, P 86.2 0.53 1.8E-05 45.6 4.0 21 153-173 8-28 (228)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.2e-43 Score=401.12 Aligned_cols=277 Identities=19% Similarity=0.248 Sum_probs=214.9
Q ss_pred eeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc--CccccccCCeEEEEEeCCch--hHHHHHHHH
Q 042981 127 CGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN--NDEVKRNFEKVIWVCVSDTF--EEIRVANAI 202 (876)
Q Consensus 127 vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 202 (876)
|||++++++|.++|.... +...+||+||||||+||||||++||+ +.+++.+|++++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997643 23689999999999999999999998 67899999999999999974 666666665
Q ss_pred HHh--------------------------------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHHHH
Q 042981 203 IEG--------------------------------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESVAR 244 (876)
Q Consensus 203 ~~~--------------------------------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 244 (876)
+.+ |||||+.+...|.. .+||+||||||++.|+.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 542 78888753212221 16999999999999999
Q ss_pred hhC-CcceEeCCCCCcccc--ccCCC-c--CCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhhcc
Q 042981 245 MMG-STNIIFIEQLTEEES--FSGRS-F--EDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEMWK 318 (876)
Q Consensus 245 ~~~-~~~~~~l~~L~~~~~--~f~~~-~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~~~ 318 (876)
.++ ...+|+|++|+.+|| +|... . ...+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+.+..+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNKLES 357 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHHhhc
Confidence 876 447899999999999 44322 2 22367889999999999999999999999998773 3444444444333
Q ss_pred ccccCCcchhhHhhcccCCCCchhHHHHHh-----------HhccCCCCceeChHHHHHHHHHc--CccccCC-ChhHHH
Q 042981 319 VEEIGQGLFAPLLLSYNDLPSNSMVKRCFS-----------YCAIFPKEYNIKKKELISLWMVQ--GYLNVEE-DEEIEM 384 (876)
Q Consensus 319 ~~~~~~~~~~~l~~sy~~L~~~~~lk~cfl-----------y~~~fp~~~~i~~~~li~~W~ae--g~i~~~~-~~~~e~ 384 (876)
. ....+.+++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +..+++
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred c--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 2 245689999999999999 9999999 999999999999 8999999 9998766 577888
Q ss_pred HHHhhhhh----cccccCCCCCCcceEEcChHHHHHHHHhcccceE
Q 042981 385 TGEEYFNI----SKFKKDDDDDDIMSCKMHDIVHDFAQFVSRKECL 426 (876)
Q Consensus 385 ~~~~~~~~----~~~~~~~~~~~~~~~~mHdlv~dla~~i~~~e~~ 426 (876)
+++ ||++ ..+.....+... +|+|||+|||+|++++.+++.
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~-~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVL-TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSC-EEECCHHHHHHHHTTSCTHHH
T ss_pred HHH-HHHHHHHcCCeeEecCCCce-EEEeChHHHHHHHHHHHHHHH
Confidence 888 9987 111111112334 899999999999999988764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-34 Score=335.19 Aligned_cols=250 Identities=19% Similarity=0.229 Sum_probs=192.5
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCe-EEEEEeCCchhHHHHHHHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 203 (876)
..|||++++++|.++|.... ..+||+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999998532 4789999999999999999999998889999996 99999998876654433222
Q ss_pred H---------------------------------------h-----ccccccCCccChhhHHhhhccCCCCCEEEEEcCc
Q 042981 204 E---------------------------------------G-----LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN 239 (876)
Q Consensus 204 ~---------------------------------------~-----lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 239 (876)
+ . |||||+. +.|+.+ + .||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 1 0 8999983 355543 2 69999999999
Q ss_pred hHHHHhhCCcceEeCC------CCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCc-cHHHHHH
Q 042981 240 ESVARMMGSTNIIFIE------QLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKS-ILKEWQK 310 (876)
Q Consensus 240 ~~v~~~~~~~~~~~l~------~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~-~~~~w~~ 310 (876)
+.++..+.....|+++ +|+.+|| +|...... ...++..+| |+|+||||+++|+.|+.+. ..++|+.
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~--~~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC--CTTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCC--CHHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 9999765544567777 8999999 45332211 123334444 9999999999999999873 5788976
Q ss_pred HhhhhhccccccCCcchhhHhhcccCCCCchhH-HHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHHhh
Q 042981 311 TLDSEMWKVEEIGQGLFAPLLLSYNDLPSNSMV-KRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGEEY 389 (876)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~l-k~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~ 389 (876)
. ....+..+|.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++|. +.++.+
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe----------edAe~~ 407 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----------SDVMVV 407 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----------HHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----------HHHHHH
Confidence 4 124689999999999999 78 999999999999999999999999999881 235566
Q ss_pred hhh----cccccCCCCCCcceEEcChHHHHHHH
Q 042981 390 FNI----SKFKKDDDDDDIMSCKMHDIVHDFAQ 418 (876)
Q Consensus 390 ~~~----~~~~~~~~~~~~~~~~mHdlv~dla~ 418 (876)
+++ ..+.. .+... +|+|||++++++.
T Consensus 408 L~eLvdRSLLq~--d~~~~-rYrMHDLllELr~ 437 (1221)
T 1vt4_I 408 VNKLHKYSLVEK--QPKES-TISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHTSSSSSB--CSSSS-EEBCCCHHHHHHH
T ss_pred HHHHHhhCCEEE--eCCCC-EEEehHHHHHHhc
Confidence 665 22222 23334 8999999999763
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.5e-32 Score=351.36 Aligned_cols=274 Identities=24% Similarity=0.309 Sum_probs=206.5
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-cccC-CeEEEEEeCCchh--HHH
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFE--EIR 197 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~ 197 (876)
....||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34569999999999999997543 36899999999999999999999997544 4555 6788999998533 222
Q ss_pred HHHHHHHh------------------------------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH
Q 042981 198 VANAIIEG------------------------------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES 241 (876)
Q Consensus 198 ~~~~i~~~------------------------------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 241 (876)
.+..++.. |||||+. ..|+. ..+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHH
Confidence 22222211 8999975 23433 257999999999999
Q ss_pred HHHh-hCCcceEeCCC-CCcccc--ccCCC-cCCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhhh
Q 042981 242 VARM-MGSTNIIFIEQ-LTEEES--FSGRS-FEDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSEM 316 (876)
Q Consensus 242 v~~~-~~~~~~~~l~~-L~~~~~--~f~~~-~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~~ 316 (876)
|+.. ++....+++++ |+++|+ +|... ....+.+.+++++|+++|+|+||||+++|++|+.+. ..|..+++...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 9954 45678999996 999999 44321 233455677899999999999999999999998875 35776665432
Q ss_pred ccc----cc----cCCcchhhHhhcccCCCCchhHHHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHHh
Q 042981 317 WKV----EE----IGQGLFAPLLLSYNDLPSNSMVKRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGEE 388 (876)
Q Consensus 317 ~~~----~~----~~~~~~~~l~~sy~~L~~~~~lk~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~ 388 (876)
... .. ..+.+..++.+||+.||+ +.|.||+|||+||+++.|++..++.+|.+++ +.++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----------~~~~~ 413 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----------EEVED 413 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----------HHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----------HHHHH
Confidence 221 11 113588999999999999 8999999999999999999999999997752 33445
Q ss_pred hhhh----cccccCCCCCCcceEEcChHHHHHHHHhcccc
Q 042981 389 YFNI----SKFKKDDDDDDIMSCKMHDIVHDFAQFVSRKE 424 (876)
Q Consensus 389 ~~~~----~~~~~~~~~~~~~~~~mHdlv~dla~~i~~~e 424 (876)
++++ ..+....++... +|+|||+||++++..+.++
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSE-EEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHhccceEEecCCCce-EEEecHHHHHHHHhhhhHH
Confidence 5544 333333345545 7999999999999988776
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.3e-30 Score=303.39 Aligned_cols=403 Identities=15% Similarity=0.111 Sum_probs=232.1
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+..+++|+++.|.+..+ +..|.++++|++|++.+|. ...+.+..|.++++|++|+| ++|.+..
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~L---------s~n~l~~ 94 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLIL---------TGNPIQS 94 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEEC---------TTCCCCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeEC---------CCCcccc
Confidence 367899999999998877 4488999999999997775 34455666899999999999 7777777
Q ss_pred c-ccccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCc-cccccccCcCCCceEecCCCCCCccCCccCC
Q 042981 520 I-PENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLR-ELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 520 l-p~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
+ |..|+++++|++|+|++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 6 778999999999999999998877 679999999999999995443 5789999999999999999987666666565
Q ss_pred CCCCCCc----cC--------------------ceeecCcc---------------------------------------
Q 042981 597 KLTSLRT----LE--------------------KFAMGGGV--------------------------------------- 613 (876)
Q Consensus 597 ~l~~L~~----L~--------------------~~~~~~~~--------------------------------------- 613 (876)
.+++|+. |. ...+....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 5554432 11 00000000
Q ss_pred -----------------CCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccch-
Q 042981 614 -----------------DDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRK- 675 (876)
Q Consensus 614 -----------------~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~- 675 (876)
..+.+ .+..+..+++|+.|++++... ..+ + .+..+++|+.|++++|.+.......
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~-~~l----~-~l~~~~~L~~L~l~~n~l~~lp~~~l 327 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSD-DIVKFHCLANVSAMSLAGVSI-KYL----E-DVPKHFKWQSLSIIRCQLKQFPTLDL 327 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCG-GGGSCGGGTTCSEEEEESCCC-CCC----C-CCCTTCCCSEEEEESCCCSSCCCCCC
T ss_pred hhhhhhccHhheeccccccccc-cccccccCCCCCEEEecCccc-hhh----h-hccccccCCEEEcccccCcccccCCC
Confidence 00000 000122334444444443211 111 0 2334444444444444331100000
Q ss_pred -----------HHHHHhhCCCCCCccEEEEeecCCCCC---CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeec
Q 042981 676 -----------NQQLLEALQPPLNVKELGIVSYGGNIF---PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLY 740 (876)
Q Consensus 676 -----------~~~~~~~l~~~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~ 740 (876)
.......+..+++|+.|+++++....+ |..+..+++|++|+|++|.+.+..+.++.++ |+.|+++
T Consensus 328 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 000000222344555555554443322 4445555556666666555443223455555 6666665
Q ss_pred CCCCceEeC-cccccCCCCCCCCCCCCCC----CcccccCcccceeeccccccccccccccccccccCcccccceeeecc
Q 042981 741 GLYGVKRVG-NEFLGIEGSSEDDPSSSSS----SSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWY 815 (876)
Q Consensus 741 ~~~~l~~~~-~~~~~~~~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 815 (876)
+|......+ ..+.....+..++++.+.+ +..+..+++|++|+++++. +.... .+..+..+++|+.|++++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNT----LSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGE----ECSCCTTCTTCCEEECTT
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcc----hHHhhccCCCCCEEECCC
Confidence 554332222 2333344444444443332 2334556666666665552 22211 134455667777777777
Q ss_pred CccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 816 CPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 816 c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
|......|..+..+++|++|++++|+.....+. .+..+++|++|++++| +++++|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~p 537 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFN-RIETSK 537 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTS-CCCCEE
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCC-cCcccC
Confidence 754445556666677777777777754432221 3556666666666666 355555
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-30 Score=313.58 Aligned_cols=407 Identities=17% Similarity=0.095 Sum_probs=265.5
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccc------------
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFI------------ 509 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~------------ 509 (876)
..++++|+++.|.+...++.+.++++|++|++.+|. + ....+..+..+++|++|++++|.+.
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-----l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-----L-SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-----C-CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-----C-CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 456778888877776554447778888888886654 2 2223444677777777777666552
Q ss_pred -cCCCCCccc-ccccccccC-cccCeeeccCcccc-ccchhhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCC
Q 042981 510 -FDPYPNLIR-EIPENVRKL-IHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGG 584 (876)
Q Consensus 510 -~~~~~~~i~-~lp~~i~~L-~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 584 (876)
++.++|.+. .+|..+..+ ++|++|+|++|.++ .+|..++++++|++|++++|...+.+|.. +.++++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 223444444 566666553 77777777777766 56667777777777777777544466655 66777777777777
Q ss_pred CCCCccCCccCCCCC-CCCccCceeecCc----------------cCCCccccc-----cccccCCCCCCeeeeCcCCCC
Q 042981 585 TPLLKYMPIGISKLT-SLRTLEKFAMGGG----------------VDDISTCRL-----ESLKNLQLLRECGIEGLSNVS 642 (876)
Q Consensus 585 ~~~~~~~p~~i~~l~-~L~~L~~~~~~~~----------------~~~ls~~~l-----~~L~~L~~L~~L~l~~~~~~~ 642 (876)
|.+.+.+|..+++++ +|++|......-. .-+++.+.+ ..+.++++|+.|+++++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N---- 428 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---- 428 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS----
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC----
Confidence 766556666665554 5555532111000 001122222 23556667777777662
Q ss_pred CcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCC-CCCchhhcccCCcEEEEecCC
Q 042981 643 HLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGN-IFPKWLTSLTNLRDLRLKSCV 721 (876)
Q Consensus 643 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~ 721 (876)
.+....+..+..+++|+.|+++.|.+.+. ....+..+++|+.|++.+|... .+|.++..+++|++|+|++|+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGE-------IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSC-------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCc-------CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 33334445567777788888877766422 1223445678888888888766 568888888899999999988
Q ss_pred CCCCCCC-CCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCC----CC--------------------------
Q 042981 722 ICEHFPP-LGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSS----SS-------------------------- 769 (876)
Q Consensus 722 ~~~~lp~-l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~----~~-------------------------- 769 (876)
+.+.+|. ++.++ |+.|+|++|.....++..+.....+..++++.+. +|
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 8876664 77888 9999998888776777666666665555554321 11
Q ss_pred --------------------------------------------cccccCcccceeeccccccccccccccccccccCcc
Q 042981 770 --------------------------------------------SSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIM 805 (876)
Q Consensus 770 --------------------------------------------~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 805 (876)
..+..+++|+.|+++++ .+.+..|..++.+
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N------~l~g~ip~~l~~l 655 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN------MLSGYIPKEIGSM 655 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS------CCBSCCCGGGGGC
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC------cccccCCHHHhcc
Confidence 12333456666655554 3344456677888
Q ss_pred cccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 806 PRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 806 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
++|+.|+|++|.....+|..+.++++|+.|+|++|+..+.+|. .+..+++|++|++++|+--..+|
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ----AMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG----GGGGCCCCSEEECCSSEEEEECC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECcCCcccccCC
Confidence 8888888888877778888888888888888888887766654 46778899999999885444555
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.3e-31 Score=316.66 Aligned_cols=384 Identities=19% Similarity=0.180 Sum_probs=271.0
Q ss_pred CCceEEEEeeecCCC-CCcccccCC-CcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-
Q 042981 442 GDKVRHLGLNFEGGA-SFPMSIHGL-NRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR- 518 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~-~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~- 518 (876)
..++++|+++.|.+. .+|..+... ++|++|++.+|. .....+..+..+++|++|++ ++|.+.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L---------~~n~l~~ 332 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH------FYGAVPPFFGSCSLLESLAL---------SSNNFSG 332 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE------EEECCCGGGGGCTTCCEEEC---------CSSEEEE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc------CCCccchHHhcCCCccEEEC---------CCCcccC
Confidence 456777777777665 446555553 778888886654 22233444777888888888 666555
Q ss_pred ccccc-cccCcccCeeeccCcccc-ccchhhccCC-cccEEeecCCCCCccccccccC--cCCCceEecCCCCCCccCCc
Q 042981 519 EIPEN-VRKLIHLKYLNLSELCIE-RLPKTLCELY-NLQKLDIRWCEDLRELPAGIGK--LKKMRSLLNGGTPLLKYMPI 593 (876)
Q Consensus 519 ~lp~~-i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~ 593 (876)
.+|.. ++++++|++|+|++|.++ .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.+.+.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 67755 778888888888888877 7787787776 7888888888665667776666 77888888888877777888
Q ss_pred cCCCCCCCCccCceeecCccCCCccccc-----cccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 594 GISKLTSLRTLEKFAMGGGVDDISTCRL-----ESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 594 ~i~~l~~L~~L~~~~~~~~~~~ls~~~l-----~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
.++++++|+.| +++.+.+ ..+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+
T Consensus 413 ~l~~l~~L~~L----------~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n----~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 413 TLSNCSELVSL----------HLSFNYLSGTIPSSLGSLSKLRDLKLWLN----MLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp GGGGCTTCCEE----------ECCSSEEESCCCGGGGGCTTCCEEECCSS----CCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred HHhcCCCCCEE----------ECcCCcccCcccHHHhcCCCCCEEECCCC----cccCcCCHHHcCCCCceEEEecCCcc
Confidence 88888888877 3333333 34667788888888774 33334445577788888888888876
Q ss_pred CccccchHHHHHhhCCCCCCccEEEEeecCCC-CCCchhhcccCCcEEEEecCCCCCCCCC-CCccc-CceEeecCCCCc
Q 042981 669 GEEGRRKNQQLLEALQPPLNVKELGIVSYGGN-IFPKWLTSLTNLRDLRLKSCVICEHFPP-LGKLP-LEKLTLYGLYGV 745 (876)
Q Consensus 669 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~L~L~~~~~l 745 (876)
.+.. ...+..+++|+.|++.+|... .+|.+++.+++|++|+|++|.+.+.+|. ++.++ |+.|++++|...
T Consensus 479 ~~~~-------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 479 TGEI-------PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CSCC-------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCcC-------CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 4221 223445678888888888766 5688888888888888888888766653 67788 888888877543
Q ss_pred eEeCccc----------------------------------------------------------------------ccC
Q 042981 746 KRVGNEF----------------------------------------------------------------------LGI 755 (876)
Q Consensus 746 ~~~~~~~----------------------------------------------------------------------~~~ 755 (876)
..++..+ ...
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 2222211 112
Q ss_pred CCCCCCCCCCC----CCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCC
Q 042981 756 EGSSEDDPSSS----SSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTT 831 (876)
Q Consensus 756 ~~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 831 (876)
..+..++++.+ .+|..+..+++|+.|+++++ .+.+..|..++.+++|+.|+|++|.....+|..+.++++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N------~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN------DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS------CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCC------ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 33444555543 45778889999999987765 445555788999999999999999877799999999999
Q ss_pred ccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCC
Q 042981 832 LQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLN 872 (876)
Q Consensus 832 L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~ 872 (876)
|+.|++++|+..+.+|.. +.+.++..+.+.+||.|.
T Consensus 706 L~~L~ls~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEM-----GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CSEEECCSSEEEEECCSS-----SSGGGSCGGGGCSCTEEE
T ss_pred CCEEECcCCcccccCCCc-----hhhccCCHHHhcCCchhc
Confidence 999999999887777643 233344444566666554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3e-29 Score=295.30 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=115.6
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+..+++|++++|.+..+ +..|.++++|++|++.+|. ...+.+..|.++++|++|+| ++|.+..
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L---------s~n~l~~ 95 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLVL---------TANPLIF 95 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEEC---------TTCCCSE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc------cceeChhhccCccccCeeeC---------CCCcccc
Confidence 467899999999999877 6789999999999997775 33455666899999999999 6666665
Q ss_pred c-ccccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCC
Q 042981 520 I-PENVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISK 597 (876)
Q Consensus 520 l-p~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 597 (876)
+ |..++++++|++|+|++|.++.+ |..++++++|++|++++|.....-+..+..+++|++|++++|.+.+..|..++.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 4 66788899999999999998877 567888999999999988544322233455888999999888776666666777
Q ss_pred CCCCC
Q 042981 598 LTSLR 602 (876)
Q Consensus 598 l~~L~ 602 (876)
+++|+
T Consensus 176 l~~L~ 180 (606)
T 3t6q_A 176 LQQAT 180 (606)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 77777
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-29 Score=297.98 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=138.6
Q ss_pred CceEEEEeeecCCC-CCcccccCCCcceEEeeecCCC------C------------------------------------
Q 042981 443 DKVRHLGLNFEGGA-SFPMSIHGLNRLRTLLIYFQSP------S------------------------------------ 479 (876)
Q Consensus 443 ~~lr~L~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~------~------------------------------------ 479 (876)
.+|+.|+++.+.+. .+|..+.++++|++|++++|.. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57889999888875 4588899999999999987731 0
Q ss_pred -------------------------------CCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc---------
Q 042981 480 -------------------------------NPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE--------- 519 (876)
Q Consensus 480 -------------------------------~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~--------- 519 (876)
.+.+.+ + +..+.++++|++|+|+ +|.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-i-p~~l~~l~~L~~L~Ls---------~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V-SKAVMRLTKLRQFYMG---------NSPFVAENICEAWEN 229 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-E-CGGGGGCTTCCEEEEE---------SCCCCGGGBSSSCSC
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-C-CHHHhcccCCCEEECc---------CCccccccccccccc
Confidence 011222 3 3347888888888884 444444
Q ss_pred ---------cccccc--cCcccCeeeccCcccc-ccchhhccCCcccEEeecCCC-CCc-cccccccCc------CCCce
Q 042981 520 ---------IPENVR--KLIHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCE-DLR-ELPAGIGKL------KKMRS 579 (876)
Q Consensus 520 ---------lp~~i~--~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~-~l~-~lp~~i~~L------~~L~~ 579 (876)
+|+.++ ++++|++|+|++|.+. .+|..++++++|++|++++|. ... .+|..++++ ++|++
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 888888 8888888888888755 788888888888888888886 444 688888776 88888
Q ss_pred EecCCCCCCccCCc--cCCCCCCCCccCceeecCccCCCcccccc----ccccCCCCCCeeeeCcCCCCCcchhhhccCc
Q 042981 580 LLNGGTPLLKYMPI--GISKLTSLRTLEKFAMGGGVDDISTCRLE----SLKNLQLLRECGIEGLSNVSHLDEDERLGLH 653 (876)
Q Consensus 580 L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~ls~~~l~----~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 653 (876)
|++++|.+. .+|. .++++++|++|. ++.+.+. .+..+++|+.|+++++ .+. ..+..+.
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~----------L~~N~l~g~ip~~~~l~~L~~L~L~~N----~l~-~lp~~l~ 373 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLE----------CLYNQLEGKLPAFGSEIKLASLNLAYN----QIT-EIPANFC 373 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEE----------CCSCCCEEECCCCEEEEEESEEECCSS----EEE-ECCTTSE
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEe----------CcCCcCccchhhhCCCCCCCEEECCCC----ccc-cccHhhh
Confidence 888888775 7887 788888888873 3333332 4455566666666652 222 3334456
Q ss_pred cccc-CCceEEEeccC
Q 042981 654 NMKN-LLRLSLEFDEE 668 (876)
Q Consensus 654 ~l~~-L~~L~L~~~~~ 668 (876)
.+++ |+.|++++|.+
T Consensus 374 ~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 374 GFTEQVENLSFAHNKL 389 (636)
T ss_dssp EECTTCCEEECCSSCC
T ss_pred hhcccCcEEEccCCcC
Confidence 6666 66666666655
No 9
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=294.68 Aligned_cols=269 Identities=23% Similarity=0.281 Sum_probs=194.7
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-cccC-CeEEEEEeCCchhHHHHHH
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 200 (876)
...+|||+.++++|.++|.... ...++|+|+||||+||||||+++|++.++ +.+| +.++|++++.... ..+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HHHHH
Confidence 4569999999999999997542 35789999999999999999999997666 7889 5899999987521 11111
Q ss_pred HH-------------------------------HH---h-----ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH
Q 042981 201 AI-------------------------------IE---G-----LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES 241 (876)
Q Consensus 201 ~i-------------------------------~~---~-----lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 241 (876)
.+ +. . |||||+.. .+ ..+ ..|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l-~~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VL-KAF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HH-HTT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HH-HHh---cCCCeEEEECCCcH
Confidence 11 10 1 89998632 22 222 56899999999999
Q ss_pred HHHhhCCcceEeC---CCCCcccc--ccCCCc-CCccchHHHHHHHHHHcCCCchHHHHhhhhhcCCccHHHHHHHhhhh
Q 042981 242 VARMMGSTNIIFI---EQLTEEES--FSGRSF-EDCEKLEPIGRKIARKCKGLPLAAKATGNLLRSKSILKEWQKTLDSE 315 (876)
Q Consensus 242 v~~~~~~~~~~~l---~~L~~~~~--~f~~~~-~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~~w~~~~~~~ 315 (876)
++..++ ...+++ ++|+.+|+ +|.... ...+...+.+.+|+++|+|+||||+.+|+.|+.+. ..|..+++..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 887654 334444 58999998 443221 12233456789999999999999999999998774 3687776643
Q ss_pred hcccc--------ccCCcchhhHhhcccCCCCchhHHHHHhHhccCCCCceeChHHHHHHHHHcCccccCCChhHHHHHH
Q 042981 316 MWKVE--------EIGQGLFAPLLLSYNDLPSNSMVKRCFSYCAIFPKEYNIKKKELISLWMVQGYLNVEEDEEIEMTGE 387 (876)
Q Consensus 316 ~~~~~--------~~~~~~~~~l~~sy~~L~~~~~lk~cfly~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~ 387 (876)
..... .....+..++..||+.||+ +.|.||++||+||+++.|+...++..|.+++ +.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----------~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----------EEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----------HHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccCH-----------HHHH
Confidence 32211 1123578899999999999 8999999999999999999999999997642 1233
Q ss_pred hhhhh----cccccCCCCCCcceEEcChHHHHHHHHhcc
Q 042981 388 EYFNI----SKFKKDDDDDDIMSCKMHDIVHDFAQFVSR 422 (876)
Q Consensus 388 ~~~~~----~~~~~~~~~~~~~~~~mHdlv~dla~~i~~ 422 (876)
.++++ ..+....++... .|+||+++++++.....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~-~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSF-RYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEE-EEECCHHHHHHHHHHTG
T ss_pred HHHHHHHhCcCeEEecCCCcc-EEEEcHHHHHHHHhhhh
Confidence 44443 222222234444 79999999999987743
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.5e-29 Score=301.94 Aligned_cols=377 Identities=17% Similarity=0.162 Sum_probs=229.0
Q ss_pred CCceEEEEeeecCCC-CCcccccCCCcceEEee-ecCCCCCC--------------------------------------
Q 042981 442 GDKVRHLGLNFEGGA-SFPMSIHGLNRLRTLLI-YFQSPSNP-------------------------------------- 481 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~-~~~~~~~~~~~Lr~L~l-~~~~~~~~-------------------------------------- 481 (876)
..+|..|+|+.+++. .+|+.+.++++|++|++ .+|..+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 467999999999886 45899999999999999 55421000
Q ss_pred ----------------------------------CCchhhhHHHhccCCcceEEecCccccccCCCCCcccc--------
Q 042981 482 ----------------------------------SLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE-------- 519 (876)
Q Consensus 482 ----------------------------------~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~-------- 519 (876)
.+.. + +..+.++++|++|+|++| .+..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-I-P~~l~~L~~L~~L~Ls~N---------~Lsg~~i~~~~~ 470 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-I-SKAIQRLTKLQIIYFANS---------PFTYDNIAVDWE 470 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-E-CGGGGGCTTCCEEEEESC---------CCCGGGBSSSCS
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-h-hHHHhcCCCCCEEECcCC---------cCCCCccccccc
Confidence 0001 2 233677777777777433 3333
Q ss_pred ----------cccccc--cCcccCeeeccCccc-cccchhhccCCcccEEeecCCC-CCc-cccccccCcC-------CC
Q 042981 520 ----------IPENVR--KLIHLKYLNLSELCI-ERLPKTLCELYNLQKLDIRWCE-DLR-ELPAGIGKLK-------KM 577 (876)
Q Consensus 520 ----------lp~~i~--~L~~Lr~L~Ls~~~i-~~lp~~i~~L~~L~~L~L~~~~-~l~-~lp~~i~~L~-------~L 577 (876)
+|+.++ +|++|++|+|++|.+ ..+|..++++++|++|+|++|. ... .+|..+++++ +|
T Consensus 471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 777766 777777777777764 3677777777777777777775 333 5777666655 77
Q ss_pred ceEecCCCCCCccCCc--cCCCCCCCCccCceeecCccCCCccccc---cccccCCCCCCeeeeCcCCCCCcchhhhccC
Q 042981 578 RSLLNGGTPLLKYMPI--GISKLTSLRTLEKFAMGGGVDDISTCRL---ESLKNLQLLRECGIEGLSNVSHLDEDERLGL 652 (876)
Q Consensus 578 ~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~ls~~~l---~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 652 (876)
++|++++|.+. .+|. .++++++|+.| +++.+.+ ..+..+++|+.|+++++. +. ..+..+
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L----------~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~----l~-~lp~~l 614 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLL----------DCVHNKVRHLEAFGTNVKLTDLKLDYNQ----IE-EIPEDF 614 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEE----------ECTTSCCCBCCCCCTTSEESEEECCSSC----CS-CCCTTS
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEE----------ECCCCCcccchhhcCCCcceEEECcCCc----cc-cchHHH
Confidence 77777777664 6776 67777777777 2333322 245566667777776632 22 334456
Q ss_pred ccccc-CCceEEEeccCCccccchHHHHHhhCCCC--CCccEEEEeecCCCCC----Cchhh--cccCCcEEEEecCCCC
Q 042981 653 HNMKN-LLRLSLEFDEEGEEGRRKNQQLLEALQPP--LNVKELGIVSYGGNIF----PKWLT--SLTNLRDLRLKSCVIC 723 (876)
Q Consensus 653 ~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~l----p~~l~--~l~~L~~L~L~~~~~~ 723 (876)
.++++ |+.|+|++|.+.. +...+... ++|+.|++++|..... |..+. .+++|+.|+|++|.+.
T Consensus 615 ~~l~~~L~~L~Ls~N~L~~--------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 615 CAFTDQVEGLGFSHNKLKY--------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp CEECTTCCEEECCSSCCCS--------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred hhccccCCEEECcCCCCCc--------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 67777 7777777776531 11122222 3477777777765332 22222 3347777888777775
Q ss_pred CCCCC--CCccc-CceEeecCCCCceEeCccccc-CC-------CCCCCCCCCCC---CCcccc--cCcccceeeccccc
Q 042981 724 EHFPP--LGKLP-LEKLTLYGLYGVKRVGNEFLG-IE-------GSSEDDPSSSS---SSSSVI--AFPKLKSLHIGAME 787 (876)
Q Consensus 724 ~~lp~--l~~Lp-L~~L~L~~~~~l~~~~~~~~~-~~-------~l~~~~~~~~~---~~~~~~--~~~~L~~L~l~~~~ 787 (876)
.+|. +..++ |+.|+|++|... .++..+.. .. .+..++++.+. +|..+. .+++|+.|+|+++
T Consensus 687 -~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N- 763 (876)
T 4ecn_A 687 -KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN- 763 (876)
T ss_dssp -SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-
T ss_pred -ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-
Confidence 3443 23567 888888877544 33322221 11 34444444332 344443 5667777766665
Q ss_pred cccccccccccccccCcccccceeeecc------CccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcC
Q 042981 788 ELEEWNYRITRKENISIMPRLSSLTIWY------CPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLS 861 (876)
Q Consensus 788 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~ 861 (876)
.+..+ |..+..+++|+.|+|++ |.....+|..+.++++|+.|+|++|+. +.+|. .-.++|+
T Consensus 764 ~L~~l------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~------~l~~~L~ 830 (876)
T 4ecn_A 764 CFSSF------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE------KLTPQLY 830 (876)
T ss_dssp CCSSC------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS------CCCSSSC
T ss_pred CCCcc------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH------hhcCCCC
Confidence 33321 44555677777777765 444556677777777777777777765 44432 1225777
Q ss_pred EEEEccCC
Q 042981 862 SLEIEYCP 869 (876)
Q Consensus 862 ~L~i~~c~ 869 (876)
.|++++|+
T Consensus 831 ~LdLs~N~ 838 (876)
T 4ecn_A 831 ILDIADNP 838 (876)
T ss_dssp EEECCSCT
T ss_pred EEECCCCC
Confidence 77777775
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.5e-29 Score=294.34 Aligned_cols=367 Identities=14% Similarity=0.151 Sum_probs=280.5
Q ss_pred CCceEEEEeeecCCCC------------------Cccccc--CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEE
Q 042981 442 GDKVRHLGLNFEGGAS------------------FPMSIH--GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRAL 501 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L 501 (876)
-.+++.|+++.|.+.. +|..+. ++++|++|++.+|. +.+.++ ..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLP-TFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCC-TTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccCh-HHHhcCCCCCEE
Confidence 5689999999999988 899988 99999999998775 233333 458899999999
Q ss_pred ecCccccccCCCCCc-cc--ccccccccC------cccCeeeccCccccccch--hhccCCcccEEeecCCCCCcccccc
Q 042981 502 VIGQRNFIFDPYPNL-IR--EIPENVRKL------IHLKYLNLSELCIERLPK--TLCELYNLQKLDIRWCEDLRELPAG 570 (876)
Q Consensus 502 ~L~~~~~~~~~~~~~-i~--~lp~~i~~L------~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~ 570 (876)
++ ++|. +. .+|..++.+ ++|++|+|++|.++.+|. .++++++|++|++++|...+.+| .
T Consensus 279 ~L---------s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 279 NV---------ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp EC---------TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred EC---------cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99 6665 55 488888877 999999999999999999 99999999999999996555899 8
Q ss_pred ccCcCCCceEecCCCCCCccCCccCCCCCC-CCccCceeecCccCCCccccccccc----c--CCCCCCeeeeCcCCCCC
Q 042981 571 IGKLKKMRSLLNGGTPLLKYMPIGISKLTS-LRTLEKFAMGGGVDDISTCRLESLK----N--LQLLRECGIEGLSNVSH 643 (876)
Q Consensus 571 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~ls~~~l~~L~----~--L~~L~~L~l~~~~~~~~ 643 (876)
+..+++|++|++++|.+. .+|..++.+++ |++| +++.+.+..++ . +++|+.|+++++ .
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L----------~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N----~ 413 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL----------SFAHNKLKYIPNIFDAKSVSVMSAIDFSYN----E 413 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE----------ECCSSCCSSCCSCCCTTCSSCEEEEECCSS----C
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE----------EccCCcCcccchhhhhcccCccCEEECcCC----c
Confidence 999999999999999774 89999999999 9999 44455554433 2 336778888873 3
Q ss_pred cchhhhccCc-------ccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhc--------
Q 042981 644 LDEDERLGLH-------NMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTS-------- 708 (876)
Q Consensus 644 ~~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~-------- 708 (876)
+....+..+. .+.+|+.|++++|.+..... . .+..+++|+.|++++|....+|..+..
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~---~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----E---LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----H---HHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccCcCCH----H---HHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 3344444455 67789999999988752111 1 122357899999999988888876553
Q ss_pred ccCCcEEEEecCCCCCCCCC-CC--ccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecc
Q 042981 709 LTNLRDLRLKSCVICEHFPP-LG--KLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIG 784 (876)
Q Consensus 709 l~~L~~L~L~~~~~~~~lp~-l~--~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 784 (876)
+++|+.|+|++|.+. .+|. +. .++ |+.|+|++|.... + |..+..+++|+.|+++
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i--------------------p~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F--------------------PTQPLNSSTLKGFGIR 544 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C--------------------CCGGGGCSSCCEEECC
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c--------------------ChhhhcCCCCCEEECC
Confidence 238999999999987 4553 54 788 9999999886432 2 2345579999999998
Q ss_pred ccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhcccc-----ccCCCCCCC
Q 042981 785 AMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILE-----DHRTTDIPR 859 (876)
Q Consensus 785 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~-----~~~~~~lp~ 859 (876)
++..+..+.+.+..|..+..+++|++|+|++|.. +.+|..+. ++|+.|++++|+... +.... ......+..
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~ 620 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFY 620 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEEC
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc-ccHHhcchhhhcccceeec
Confidence 8776666766666677888999999999999955 88998865 899999999998653 21100 011122334
Q ss_pred cCEEEEccCCCCC
Q 042981 860 LSSLEIEYCPKLN 872 (876)
Q Consensus 860 L~~L~i~~c~~L~ 872 (876)
.+..+|.+|+.|.
T Consensus 621 ~~~~~i~~C~~L~ 633 (636)
T 4eco_A 621 DKTQDIRGCDALD 633 (636)
T ss_dssp CTTSEEESCGGGC
T ss_pred CCccccCCCcccc
Confidence 4666899999875
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=285.70 Aligned_cols=389 Identities=18% Similarity=0.178 Sum_probs=243.8
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+..+++|+++.|.+..+ +..|.++++|++|++.+|. ...+++..|.++++|++|+| ++|.+..
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L---------~~n~l~~ 90 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLIL---------TGNPIQS 90 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEEC---------TTCCCCE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeC---------cCCcCCc
Confidence 467899999999998876 5578999999999998775 34455666889999999999 7777777
Q ss_pred cc-cccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCc-cccccccCcCCCceEecCCCCCCccCCccCC
Q 042981 520 IP-ENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLR-ELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 520 lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
+| ..|+++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 65 678999999999999999998876 68999999999999985444 4788999999999999999987666666777
Q ss_pred CCCCCCccC-ceeecCccCCCccccccc-----cccCCCCCCeeeeCcCC---------------------------C--
Q 042981 597 KLTSLRTLE-KFAMGGGVDDISTCRLES-----LKNLQLLRECGIEGLSN---------------------------V-- 641 (876)
Q Consensus 597 ~l~~L~~L~-~~~~~~~~~~ls~~~l~~-----L~~L~~L~~L~l~~~~~---------------------------~-- 641 (876)
.+++|..+. .. +++.+.+.. +..+ +|+.|++++... .
T Consensus 171 ~l~~L~~~~~~L-------~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 171 VLHQMPLLNLSL-------DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp HHHTCTTCCCEE-------ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred chhccchhhhhc-------ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 777772211 11 111111111 1111 222232222100 0
Q ss_pred -------------------------CCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEee
Q 042981 642 -------------------------SHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVS 696 (876)
Q Consensus 642 -------------------------~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 696 (876)
.......+..+..+++|+.|++++|.+.. +...+... +|+.|++.+
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--------l~~~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNF-GWQHLELVN 313 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--------CCBCCSCC-CCSEEEEES
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--------hhhhhccC-CccEEeecc
Confidence 01112223445566777777777765431 11223333 677777776
Q ss_pred cCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEe--Ccc----------------------
Q 042981 697 YGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRV--GNE---------------------- 751 (876)
Q Consensus 697 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~--~~~---------------------- 751 (876)
+....+|. ..+++|+.|++++|......+. ..+| |+.|++++|...... +..
T Consensus 314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred CcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence 66666665 2455666666666655443333 4455 555555554432221 122
Q ss_pred -cccCCCCCCCCCCCCCC----C-cccccCcccceeeccccccccccccccccccccCcccccceeeeccCccC-CCCCC
Q 042981 752 -FLGIEGSSEDDPSSSSS----S-SSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRL-RVLPD 824 (876)
Q Consensus 752 -~~~~~~l~~~~~~~~~~----~-~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~ 824 (876)
+.....+..++++.+.+ + ..+..+++|+.|+++++. +. ...+..+..+++|+.|++++|... ..+|.
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TR-----VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CE-----ECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-cc-----ccchhhhhcCCcCcEEECcCCcCccccchh
Confidence 33333344444433221 1 234455566666555542 21 122345667788888888888554 36777
Q ss_pred CCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 825 YLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 825 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
.+..+++|+.|++++|......+ ..+..+|+|+.|++++| +++.+|
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hhhcccCCCEEECCCCccccCCh----hhhhcccCCCEEeCCCC-cCCCCC
Confidence 78888888888888886543322 25678899999999998 677665
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.3e-28 Score=284.60 Aligned_cols=404 Identities=14% Similarity=0.089 Sum_probs=207.9
Q ss_pred CCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
-.++++|+++.|.+..+ +..|.++++|++|++.+|. .....+..|..+++|++|++ ++|.+..+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~i~~l 120 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP------LIFMAETALSGPKALKHLFF---------IQTGISSI 120 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CSEECTTTTSSCTTCCEEEC---------TTSCCSCG
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCc------ccccChhhhcccccccEeec---------cccCcccC
Confidence 45688888888887665 6678888888888887665 23344455788888888888 55556655
Q ss_pred -ccccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCc--eEecCCCCCCccCCccCC
Q 042981 521 -PENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMR--SLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 521 -p~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~--~L~l~~~~~~~~~p~~i~ 596 (876)
|..++++++|++|+|++|.++.++ +.+..+++|++|++++|......|..+..+++|+ .|++++|.+.+..|..+.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 455677777777777777777652 3344477777777777754444466677777777 677777766544443322
Q ss_pred CCCCCCccCceeec------------------------------------------CccCCCcccccc-----ccccCCC
Q 042981 597 KLTSLRTLEKFAMG------------------------------------------GGVDDISTCRLE-----SLKNLQL 629 (876)
Q Consensus 597 ~l~~L~~L~~~~~~------------------------------------------~~~~~ls~~~l~-----~L~~L~~ 629 (876)
. .+|+.|...... -..-+++.+.+. .+..+++
T Consensus 201 ~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 201 S-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp T-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred h-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 1 222221100000 000001111111 1334455
Q ss_pred CCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHH-----------------H-HHhhCCCCCCccE
Q 042981 630 LRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQ-----------------Q-LLEALQPPLNVKE 691 (876)
Q Consensus 630 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-----------------~-~~~~l~~~~~L~~ 691 (876)
|+.|++++.. +. ..+..+.++++|+.|++++|.+....+.... . ....+..+++|+.
T Consensus 280 L~~L~l~~n~----l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 280 LQELDLTATH----LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CSEEECTTSC----CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred CCEEeccCCc----cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 5555555421 11 1222344455555555555444211000000 0 0011223344444
Q ss_pred EEEeecCCCCC---CchhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCCceEeCcc-cccCCCCCCCCCCC
Q 042981 692 LGIVSYGGNIF---PKWLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYGVKRVGNE-FLGIEGSSEDDPSS 765 (876)
Q Consensus 692 L~l~~~~~~~l---p~~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~l~~~~~~-~~~~~~l~~~~~~~ 765 (876)
|+++++....+ |..+..+++|++|++++|.+.+..| .++.++ |+.|++++|......+.. +.....+..++++.
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 44444443332 2334444444444444444433222 234444 555555444322221111 22333344444443
Q ss_pred CCC----CcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCC
Q 042981 766 SSS----SSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCP 841 (876)
Q Consensus 766 ~~~----~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 841 (876)
+.+ +..+..+++|++|+++++. +....+ ..+..+..+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNH-FPKGNI--QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEE--CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCC-CCcccc--ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 322 2334456666666666552 222111 011345677888888888885555556777778888888888886
Q ss_pred CchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 842 IMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 842 ~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
.....+. .+..+++| .|++++| +++.+|
T Consensus 512 l~~~~~~----~l~~l~~L-~L~L~~N-~l~~~~ 539 (606)
T 3t6q_A 512 LTSSSIE----ALSHLKGI-YLNLASN-HISIIL 539 (606)
T ss_dssp CCGGGGG----GGTTCCSC-EEECCSS-CCCCCC
T ss_pred cCcCChh----HhCccccc-EEECcCC-cccccC
Confidence 5443322 34566666 6666666 444443
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=8.5e-28 Score=282.87 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=119.5
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~ 525 (876)
.++.+.++++.+|..+. ++|++|++.++. ...+++..|.++++|++|+| ++|.+..+ |..|+
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------s~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDL---------SRCEIETIEDKAWH 77 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEEC---------TTCCCCEECTTTTT
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCC------cCEeChhhccCCccCcEEeC---------CCCcccccCHHHhh
Confidence 46666777888777664 899999998776 34455556899999999999 77777776 56789
Q ss_pred cCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCc-cCCccCCCCCCCCc
Q 042981 526 KLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLK-YMPIGISKLTSLRT 603 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~ 603 (876)
++++|++|+|++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|.+.+ .+|..++++++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999987 7889999999999999995444444789999999999999998765 57999999999999
Q ss_pred cCc
Q 042981 604 LEK 606 (876)
Q Consensus 604 L~~ 606 (876)
|..
T Consensus 158 L~L 160 (606)
T 3vq2_A 158 VDL 160 (606)
T ss_dssp EEC
T ss_pred EEc
Confidence 843
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.2e-28 Score=294.19 Aligned_cols=378 Identities=17% Similarity=0.178 Sum_probs=280.1
Q ss_pred CcccccCCCcceEEeeecCCCCCCCC------------chhhhHHH-hccCCcceEEecCccccccCCCCCc-ccccccc
Q 042981 458 FPMSIHGLNRLRTLLIYFQSPSNPSL------------NSSILSEL-FSKLACFRALVIGQRNFIFDPYPNL-IREIPEN 523 (876)
Q Consensus 458 ~~~~~~~~~~Lr~L~l~~~~~~~~~~------------~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~~~~-i~~lp~~ 523 (876)
+|..+.++++|++|++.+|......+ .+.++..+ |.++++|++|+| ++|. ...+|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L---------s~N~l~~~iP~~ 510 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL---------YNCPNMTQLPDF 510 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE---------ESCTTCCSCCGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC---------cCCCCCccChHH
Confidence 57788999999999998876322000 00244442 349999999999 4443 4578999
Q ss_pred cccCcccCeeeccCcc-cc--ccchhhccCC-------cccEEeecCCCCCccccc--cccCcCCCceEecCCCCCCccC
Q 042981 524 VRKLIHLKYLNLSELC-IE--RLPKTLCELY-------NLQKLDIRWCEDLRELPA--GIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~-i~--~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
+++|++|++|+|++|. ++ .+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|.+. .+
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence 9999999999999998 88 4998888776 99999999995 559999 8999999999999999875 88
Q ss_pred CccCCCCCCCCccCceeecCccCCCcccccc----ccccCCC-CCCeeeeCcCCCCCcchhhhccCcccc--cCCceEEE
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLE----SLKNLQL-LRECGIEGLSNVSHLDEDERLGLHNMK--NLLRLSLE 664 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~----~L~~L~~-L~~L~l~~~~~~~~~~~~~~~~l~~l~--~L~~L~L~ 664 (876)
| .++.+++|+.| +++.+.+. .+..+++ |+.|+++++. +. ..+..+..+. +|+.|+++
T Consensus 589 p-~~~~L~~L~~L----------~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~----L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 589 E-AFGTNVKLTDL----------KLDYNQIEEIPEDFCAFTDQVEGLGFSHNK----LK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp C-CCCTTSEESEE----------ECCSSCCSCCCTTSCEECTTCCEEECCSSC----CC-SCCSCCCTTCSSCEEEEECC
T ss_pred h-hhcCCCcceEE----------ECcCCccccchHHHhhccccCCEEECcCCC----CC-cCchhhhccccCCCCEEECc
Confidence 8 88899999988 33344433 4567777 9999998853 22 2334455554 49999999
Q ss_pred eccCCccccchHHHHHhhCC--CCCCccEEEEeecCCCCCCchhh-cccCCcEEEEecCCCCCCCCC---------CCcc
Q 042981 665 FDEEGEEGRRKNQQLLEALQ--PPLNVKELGIVSYGGNIFPKWLT-SLTNLRDLRLKSCVICEHFPP---------LGKL 732 (876)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~---------l~~L 732 (876)
+|.+.+..+. +...+. ..++|+.|++++|....+|.++. .+++|+.|+|++|.+. .+|. ++.+
T Consensus 653 ~N~l~g~ip~----l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 653 YNKIGSEGRN----ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp SSCTTTTSSS----CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred CCcCCCcccc----chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 9987432110 000111 34589999999999999998876 8999999999999886 4443 3356
Q ss_pred c-CceEeecCCCCceEeCcccc--cCCCCCCCCCCCCC---CCcccccCcccceeeccccccccccccccccccccCccc
Q 042981 733 P-LEKLTLYGLYGVKRVGNEFL--GIEGSSEDDPSSSS---SSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMP 806 (876)
Q Consensus 733 p-L~~L~L~~~~~l~~~~~~~~--~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 806 (876)
+ |+.|+|++|... .++..+. ....+..++++.+. +|..+..+++|+.|+++++..+..+.+.+..|..+..++
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 7 999999999654 5666665 66777777777543 566778899999999999877777777666777888999
Q ss_pred ccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhcccc-----ccCCCCCCCcCEEEEccCCCCC
Q 042981 807 RLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILE-----DHRTTDIPRLSSLEIEYCPKLN 872 (876)
Q Consensus 807 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~-----~~~~~~lp~L~~L~i~~c~~L~ 872 (876)
+|+.|+|++|.. +.+|..+. ++|+.|+|++|+.... .... ......+..-+..+|.+|+.|.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i-~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE-ECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc-ChHHccccccchheeecCCCccccCCCCCcc
Confidence 999999999955 89998865 7999999999986432 1110 0011122222344788998875
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=3.6e-28 Score=282.48 Aligned_cols=397 Identities=18% Similarity=0.170 Sum_probs=262.9
Q ss_pred CCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
+..+++|+++.|.+..+ +..|.++++|++|++.+|. ...+++..|..+++|++|+| ++|.+..+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L---------s~n~l~~~ 89 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDL---------SDNHLSSL 89 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEEC---------TTSCCCSC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEEC---------CCCccCcc
Confidence 56899999999998876 6789999999999998776 33455566899999999999 77777777
Q ss_pred ccc-cccCcccCeeeccCccccc--cchhhccCCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCCccCCccCC
Q 042981 521 PEN-VRKLIHLKYLNLSELCIER--LPKTLCELYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 521 p~~-i~~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
|.. ++++++|++|+|++|.++. .|..++++++|++|++++|.....+| ..+.++++|++|++++|.+.+..|..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 755 8999999999999999984 46789999999999999997677776 5799999999999999999888899999
Q ss_pred CCCCCCccCceeecCccCCCccccccc-----cccCCCCCCeeeeCcCCCCC-----------------------cc---
Q 042981 597 KLTSLRTLEKFAMGGGVDDISTCRLES-----LKNLQLLRECGIEGLSNVSH-----------------------LD--- 645 (876)
Q Consensus 597 ~l~~L~~L~~~~~~~~~~~ls~~~l~~-----L~~L~~L~~L~l~~~~~~~~-----------------------~~--- 645 (876)
.+++|++|... .+.+.. +..+++|+.|++++...... +.
T Consensus 170 ~l~~L~~L~l~----------~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 170 SIRDIHHLTLH----------LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp TCSEEEEEEEE----------CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccCceEecc----------cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 98888888432 222211 13456667777766322110 00
Q ss_pred -hhhhccCcccccCCceEEEeccCCccccch--HHHHHhh--------------------------CCCCCCccEEEEee
Q 042981 646 -EDERLGLHNMKNLLRLSLEFDEEGEEGRRK--NQQLLEA--------------------------LQPPLNVKELGIVS 696 (876)
Q Consensus 646 -~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~--------------------------l~~~~~L~~L~l~~ 696 (876)
......+..+++|+.|+++.|.+.+..... ....+.. .....+|+.|++.+
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 011112233344444444443321100000 0000000 00124688888888
Q ss_pred cCCCCCCchhh-cccCCcEEEEecCCCCCCCC----CCCccc-CceEeecCCCCceEe--CcccccCCCCCCCCCCCCC-
Q 042981 697 YGGNIFPKWLT-SLTNLRDLRLKSCVICEHFP----PLGKLP-LEKLTLYGLYGVKRV--GNEFLGIEGSSEDDPSSSS- 767 (876)
Q Consensus 697 ~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~lp----~l~~Lp-L~~L~L~~~~~l~~~--~~~~~~~~~l~~~~~~~~~- 767 (876)
+....+|.++. .+++|++|+|++|.+.+.+| .++.+| |+.|++++|...... +..+.....+..++++.+.
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 88888888874 79999999999999876432 367788 999999988653322 1335555666666666443
Q ss_pred --CCcccccCcccceeeccccccccccc-----------ccccc-ccccCcccccceeeeccCccCCCCCCCCCCCCCcc
Q 042981 768 --SSSSVIAFPKLKSLHIGAMEELEEWN-----------YRITR-KENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQ 833 (876)
Q Consensus 768 --~~~~~~~~~~L~~L~l~~~~~L~~~~-----------~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 833 (876)
+|..+..+++|++|+++++. +.... +.... ......+++|++|++++| .++.+|. ...+++|+
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~ 476 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLL 476 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCC
T ss_pred ccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCC
Confidence 34555667788888877763 32211 10000 011235677777777777 4556775 34577777
Q ss_pred EEEEecCCCchhhccccccCCCCCCCcCEEEEccCCC
Q 042981 834 KLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPK 870 (876)
Q Consensus 834 ~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~ 870 (876)
.|++++|+.....+ ..+..+++|+.|++++||-
T Consensus 477 ~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 477 VMKISRNQLKSVPD----GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCCCCCT----TGGGGCTTCCEEECCSSCB
T ss_pred EEecCCCccCCcCH----HHHhcCcccCEEEecCCCc
Confidence 77777775443221 1356677888888877763
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=290.34 Aligned_cols=402 Identities=17% Similarity=0.103 Sum_probs=246.0
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.++++++|+++.|.+..+ +..|.++++|++|++.+|. ....+.+..|.++++|++|+| ++|.+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~L---------s~N~l~~ 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDL---------GSSKIYF 87 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEEC---------TTCCCCE
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEEC---------CCCcCcc
Confidence 578999999999999876 7789999999999997763 244555666899999999999 6666666
Q ss_pred c-ccccccCcccCeeeccCccccc-cchh--hccCCcccEEeecCCCCCccc-cccccCcCCCceEecCCCCCCccCCcc
Q 042981 520 I-PENVRKLIHLKYLNLSELCIER-LPKT--LCELYNLQKLDIRWCEDLREL-PAGIGKLKKMRSLLNGGTPLLKYMPIG 594 (876)
Q Consensus 520 l-p~~i~~L~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~ 594 (876)
+ |..|+++++|++|+|++|.++. +|.. ++++++|++|+|++|...... +..|+++++|++|++++|.+.+..|..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 5 6788889999999999988874 5554 888899999999988544433 356888899999998888776666666
Q ss_pred CCCC--CCCCccCceeecCcc--------------------CCCcccccc-----cc-----------------------
Q 042981 595 ISKL--TSLRTLEKFAMGGGV--------------------DDISTCRLE-----SL----------------------- 624 (876)
Q Consensus 595 i~~l--~~L~~L~~~~~~~~~--------------------~~ls~~~l~-----~L----------------------- 624 (876)
++.+ ++|+.|......-.. -+++.+.+. .+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 6555 555555321110000 011111100 00
Q ss_pred -------------cc--CCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCc
Q 042981 625 -------------KN--LQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNV 689 (876)
Q Consensus 625 -------------~~--L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L 689 (876)
.. .++|+.|++++ +.+....+..+..+++|+.|+|++|.+.... ...+..+++|
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-------~~~~~~l~~L 316 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSH----GFVFSLNSRVFETLKDLKVLNLAYNKINKIA-------DEAFYGLDNL 316 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTT----CCCCEECSCCSSSCCCCCEEEEESCCCCEEC-------TTTTTTCSSC
T ss_pred cccccCCCChhhhhccccCCccEEECCC----CcccccChhhhhcCCCCCEEECCCCcCCCCC-------hHHhcCCCCC
Confidence 00 13344455544 2222333455677888888888888764221 1345567788
Q ss_pred cEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCCceE-----------eCcccccC
Q 042981 690 KELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYGVKR-----------VGNEFLGI 755 (876)
Q Consensus 690 ~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~l~~-----------~~~~~~~~ 755 (876)
+.|++++|....+ |.++..+++|+.|+|++|.+....+ .++.++ |+.|+|++|..... .++.+...
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence 8888888877655 6677788888888888888755333 367788 88888887763221 11111111
Q ss_pred C----CCCCCCCCCCCCCc-----ccccCcccceeecccccccccc--------------------cc-----ccccccc
Q 042981 756 E----GSSEDDPSSSSSSS-----SVIAFPKLKSLHIGAMEELEEW--------------------NY-----RITRKEN 801 (876)
Q Consensus 756 ~----~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~L~~~--------------------~~-----~~~~~~~ 801 (876)
. .+..++++.+.+.. .+..+++|+.|+++++. +... .+ .+..+..
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhh
Confidence 0 01111122111111 12245566666555541 2111 00 0111233
Q ss_pred cCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 802 ISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 802 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
+..+++|+.|+|++|......|..+..+++|+.|+|++|... .++.. .+. ++|+.|++++| +|+.++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~---~~~--~~L~~L~Ls~N-~l~~~~ 542 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN---DLP--ANLEILDISRN-QLLAPN 542 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS-SCCCC---CCC--SCCCEEEEEEE-CCCCCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC-ccChh---hhh--ccccEEECCCC-cCCCCC
Confidence 556677777777777444444445667777777777777533 22211 111 67777777777 454443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=275.11 Aligned_cols=385 Identities=15% Similarity=0.095 Sum_probs=216.2
Q ss_pred CCceEEEEeeecCCCCCc-ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFP-MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
+.++++|+++.|.+..++ ..|.++++|++|++.+|. ...+.+..|..+++|++|+| ++|.+..+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------s~N~l~~l 84 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDL---------SHNKLVKI 84 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEEC---------CSSCCCEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEec---------CCCceeec
Confidence 467788888887777663 567778888888886665 23444555777888888888 66666677
Q ss_pred ccccccCcccCeeeccCccccc--cchhhccCCcccEEeecCCCCCccccccccCcCCC--ceEecCCCCC--CccCCcc
Q 042981 521 PENVRKLIHLKYLNLSELCIER--LPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKM--RSLLNGGTPL--LKYMPIG 594 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~ 594 (876)
|.. .+++|++|+|++|.++. +|..++++++|++|++++|.. .. ..+..+++| ++|++++|.+ .+..|..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceeeEEEeeccccccccccccc
Confidence 765 67788888888888774 567788888888888887743 32 346667777 8888887766 5555655
Q ss_pred CCCCC--------------------------CCCccCceeecCcc--CCCccccccccccCCCCCCeeeeCcCCCCCcch
Q 042981 595 ISKLT--------------------------SLRTLEKFAMGGGV--DDISTCRLESLKNLQLLRECGIEGLSNVSHLDE 646 (876)
Q Consensus 595 i~~l~--------------------------~L~~L~~~~~~~~~--~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~ 646 (876)
+..+. +|+.|......... ..+ ...+..+..+++|+.|.+.++........
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH-HHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee-ecchhhhccccchhhccccccccCHHHHH
Confidence 55433 22222111000000 000 00112233444444444433210000000
Q ss_pred hhhccCcccccCCceEEEeccCCccccchHHHHHhhC-----CCCCCccEEEEeecCCCCCC-chh--------------
Q 042981 647 DERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEAL-----QPPLNVKELGIVSYGGNIFP-KWL-------------- 706 (876)
Q Consensus 647 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~lp-~~l-------------- 706 (876)
..... ..+++|+.|++++|.+.+..+ ..+ ..+.+|+.+++.++.. .+| .++
T Consensus 239 ~~~~~-~~~~~L~~L~l~~n~l~~~~p-------~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 239 RILQL-VWHTTVWYFSISNVKLQGQLD-------FRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp HHHHH-HHTSSCSEEEEEEEEEESCCC-------CCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred HHHHH-hhhCcccEEEeecccccCccc-------cchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 00000 012356666666654421100 111 2222333333333332 222 111
Q ss_pred -----------hcccCCcEEEEecCCCCCCC-CCCCccc-CceEeecCCCCce--EeCcccccCCCCCCCCCCCCCCCc-
Q 042981 707 -----------TSLTNLRDLRLKSCVICEHF-PPLGKLP-LEKLTLYGLYGVK--RVGNEFLGIEGSSEDDPSSSSSSS- 770 (876)
Q Consensus 707 -----------~~l~~L~~L~L~~~~~~~~l-p~l~~Lp-L~~L~L~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~- 770 (876)
..+++|++|++++|.+.+.+ +.++.++ |+.|++++|.... ..+..+.....+..++++.+.+..
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 45667777777777776633 3466677 7777777766443 122334455556666666554432
Q ss_pred ----ccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhh
Q 042981 771 ----SVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEEL 846 (876)
Q Consensus 771 ----~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 846 (876)
.+..+++|+.|+++++. +... .+..+ .++|+.|++++| .++.+|..+..+++|++|++++|+.. .+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l 459 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNI-LTDT-----IFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK-SV 459 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSC-CCGG-----GGGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred cccchhccCccCCEEECcCCC-CCcc-----hhhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC-cc
Confidence 24456777777776652 2211 12222 168888888888 55688887778888999999888644 44
Q ss_pred ccccccCCCCCCCcCEEEEccCC
Q 042981 847 RILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 847 ~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
+. ..+..+++|+.|++++||
T Consensus 460 ~~---~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PD---GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CT---TTTTTCTTCCEEECCSSC
T ss_pred CH---HHhccCCcccEEECcCCC
Confidence 32 246778889999998885
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.8e-27 Score=284.08 Aligned_cols=403 Identities=18% Similarity=0.189 Sum_probs=240.3
Q ss_pred CCCceEEEEeeecCCCCCc-ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASFP-MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+.++++|+++.|.+..++ ..|.++++|++|++.++. ...+.+..|.++++|++|+| ++|.+..
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~l~~ 87 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNL---------QHNELSQ 87 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEEC---------CSSCCCC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEEC---------CCCccCc
Confidence 3678999999999988874 468899999999998775 23445566889999999999 7777778
Q ss_pred ccc-ccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCC-
Q 042981 520 IPE-NVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS- 596 (876)
Q Consensus 520 lp~-~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~- 596 (876)
+|. .|+++++|++|+|++|.++.+| ..++++++|++|++++|......|..+.++++|++|++++|.+.+..|..++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 886 5889999999999999998877 5688999999999999866666677788899999999998876554443332
Q ss_pred -CCCCCCccCceeecCccC-----------------------------------------CCccccc-----cccccCC-
Q 042981 597 -KLTSLRTLEKFAMGGGVD-----------------------------------------DISTCRL-----ESLKNLQ- 628 (876)
Q Consensus 597 -~l~~L~~L~~~~~~~~~~-----------------------------------------~ls~~~l-----~~L~~L~- 628 (876)
.+++|+.|......-... +++.+.+ ..+..++
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 345666653211100000 0000000 0111221
Q ss_pred -CCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCC------C
Q 042981 629 -LLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGN------I 701 (876)
Q Consensus 629 -~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~ 701 (876)
+|+.|+++++ .+....+..+..+++|+.|++++|.+... ....+..+++|+.|++.++... .
T Consensus 248 ~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 248 TNLTMLDLSYN----NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-------FSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp SCCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSCCBSEE-------CTTTTTTCTTCCEEECTTCBCCC------
T ss_pred CCCCEEECCCC----CcCccCcccccCcccccEeeCCCCccCcc-------ChhhhcCCCCccEEeccchhhhccccccc
Confidence 1444444442 22222233455566666666666654311 1123445566777776654322 3
Q ss_pred CCc----hhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCC-ceEe-CcccccC--CCCCCCCCCCCCC---
Q 042981 702 FPK----WLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYG-VKRV-GNEFLGI--EGSSEDDPSSSSS--- 768 (876)
Q Consensus 702 lp~----~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~-l~~~-~~~~~~~--~~l~~~~~~~~~~--- 768 (876)
+|. .+..+++|++|++++|.+.+..+ .++.++ |+.|++++|.. +..+ ...|... ..+..++++.+.+
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 343 55677888888888888766443 266777 88888776641 1111 1111111 1222233332221
Q ss_pred -CcccccCcccceeecccccccccc-------------------ccccccccccCcccccceeeeccCccC--CCCCCCC
Q 042981 769 -SSSVIAFPKLKSLHIGAMEELEEW-------------------NYRITRKENISIMPRLSSLTIWYCPRL--RVLPDYL 826 (876)
Q Consensus 769 -~~~~~~~~~L~~L~l~~~~~L~~~-------------------~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~lp~~l 826 (876)
+..+..+++|+.|+++++.--... .+....+..+..+|+|+.|++++|... ..+|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 223444555555555443210000 011111234445666666666666432 3567777
Q ss_pred CCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCC
Q 042981 827 FQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVL 874 (876)
Q Consensus 827 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~l 874 (876)
.++++|+.|++++|... .+ ....+..+++|+.|++++| +++.+
T Consensus 477 ~~l~~L~~L~Ls~N~l~-~i---~~~~~~~l~~L~~L~Ls~N-~l~~~ 519 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIA-NI---NDDMLEGLEKLEILDLQHN-NLARL 519 (680)
T ss_dssp TTCTTCCEEECCSSCCC-CC---CTTTTTTCTTCCEEECCSS-CCGGG
T ss_pred ccCCCCCEEECCCCCCC-cC---ChhhhccccccCEEeCCCC-Ccccc
Confidence 77888888888887643 22 2234677888999999888 45543
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=277.36 Aligned_cols=402 Identities=16% Similarity=0.083 Sum_probs=265.8
Q ss_pred CCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
-+++++|+++.|.+..+ +..|.++++|++|++.+|. ...+++..|..+++|++|++ ++|.+..+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~l~~l 115 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVA---------VETNLASL 115 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEEC---------TTSCCCCS
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc------CCccCHhhhcCccccccccc---------cccccccC
Confidence 46799999999998877 5678999999999998775 34455566899999999999 77777777
Q ss_pred cc-ccccCcccCeeeccCccccc--cchhhccCCcccEEeecCCCCCccccccccCcCCC----ceEecCCCCCCccCCc
Q 042981 521 PE-NVRKLIHLKYLNLSELCIER--LPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKM----RSLLNGGTPLLKYMPI 593 (876)
Q Consensus 521 p~-~i~~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L----~~L~l~~~~~~~~~p~ 593 (876)
|. .++++++|++|++++|.++. +|..++++++|++|++++|......|..++.+++| ++|++++|.+....|.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 75 58999999999999999985 79999999999999999996555567778888888 8999999977655554
Q ss_pred cCCCCCCCCccCceeecCcc-----------------------------C------------------------CCcccc
Q 042981 594 GISKLTSLRTLEKFAMGGGV-----------------------------D------------------------DISTCR 620 (876)
Q Consensus 594 ~i~~l~~L~~L~~~~~~~~~-----------------------------~------------------------~ls~~~ 620 (876)
.+..+ +|+.|......... . .+....
T Consensus 196 ~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 274 (570)
T 2z63_A 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274 (570)
T ss_dssp TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS
T ss_pred HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc
Confidence 44432 44444211100000 0 000111
Q ss_pred ccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchH------------HHHHhhCCCCCC
Q 042981 621 LESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKN------------QQLLEALQPPLN 688 (876)
Q Consensus 621 l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~------------~~~~~~l~~~~~ 688 (876)
...+..+++|+.|+++++... ..+..+..+ +|+.|+++.|.+........ .........+++
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEEC-----SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhhhcCcCcccEEEecCccch-----hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence 123455667777777653211 122233334 45555555444321000000 000000023456
Q ss_pred ccEEEEeecCCCCC---CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeC-cccccCCCCCCCCC
Q 042981 689 VKELGIVSYGGNIF---PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVG-NEFLGIEGSSEDDP 763 (876)
Q Consensus 689 L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~-~~~~~~~~l~~~~~ 763 (876)
|+.|+++++..... |..+..+++|++|++++|.+.+..+.++.++ |+.|++++|......+ ..+.....+..+++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 66676666655443 4556677777777777777655444466677 7777777765333222 23444555566666
Q ss_pred CCCC----CCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEec
Q 042981 764 SSSS----SSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISY 839 (876)
Q Consensus 764 ~~~~----~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 839 (876)
+.+. .+..+..+++|+.|+++++. +....+ +..+..+++|+.|++++|......|..+..+++|++|++++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFL----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEE----CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCc-Cccccc----hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 5443 23456789999999998884 332222 56778999999999999966666688999999999999999
Q ss_pred CCCchhhccccccCCCCCCCcCEEEEccCCCCCCC
Q 042981 840 CPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVL 874 (876)
Q Consensus 840 ~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~l 874 (876)
|+..... ...+..+++|+.|++++||--...
T Consensus 504 n~l~~~~----~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 504 NQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp SCCSCCC----TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CcCCCCC----HHHhhcccCCcEEEecCCcccCCC
Confidence 9654322 225788999999999998644333
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.3e-26 Score=259.53 Aligned_cols=342 Identities=21% Similarity=0.242 Sum_probs=251.3
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
..++.+.+..+.+..++ .+..+++|++|++.+|. ...+++ +..+++|++|++ ++|.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~------l~~~~~--~~~l~~L~~L~l---------~~n~l~~~~~ 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ------LTDITP--LKNLTKLVDILM---------NNNQIADITP 107 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEEC---------CSSCCCCCGG
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCc------cCCchh--hhccccCCEEEC---------CCCccccChh
Confidence 56888999888887765 47788999999997765 222333 788999999999 7777777776
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
++++++|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+++++ .. .++ .++++++|+
T Consensus 108 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~-~~-~~~-~~~~l~~L~ 180 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQ-VT-DLK-PLANLTTLE 180 (466)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEES-CC-CCG-GGTTCTTCC
T ss_pred -hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCc-cc-Cch-hhccCCCCC
Confidence 8899999999999999998876 889999999999988 4666664 889999999998643 32 333 377888888
Q ss_pred ccCceeecCccCCCccccc---cccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHH
Q 042981 603 TLEKFAMGGGVDDISTCRL---ESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQL 679 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l---~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 679 (876)
.|. ++.+.+ ..+..+++|+.|+++++.. ....+ +..+++|+.|++++|.+...
T Consensus 181 ~L~----------l~~n~l~~~~~l~~l~~L~~L~l~~n~l----~~~~~--~~~l~~L~~L~l~~n~l~~~-------- 236 (466)
T 1o6v_A 181 RLD----------ISSNKVSDISVLAKLTNLESLIATNNQI----SDITP--LGILTNLDELSLNGNQLKDI-------- 236 (466)
T ss_dssp EEE----------CCSSCCCCCGGGGGCTTCSEEECCSSCC----CCCGG--GGGCTTCCEEECCSSCCCCC--------
T ss_pred EEE----------CcCCcCCCChhhccCCCCCEEEecCCcc----ccccc--ccccCCCCEEECCCCCcccc--------
Confidence 883 333333 3466778888888887432 22111 56788899999998876422
Q ss_pred HhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCC
Q 042981 680 LEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGS 758 (876)
Q Consensus 680 ~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l 758 (876)
..+..+++|+.|++.++....++. +..+++|+.|++++|.+.+. +.++.++ |+.|++++|......
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~---------- 303 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDIS---------- 303 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCSCCG----------
T ss_pred -hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCcccCch----------
Confidence 234567889999999888777665 77889999999999988654 4478888 999999887633211
Q ss_pred CCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEe
Q 042981 759 SEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSIS 838 (876)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 838 (876)
.+..+++|+.|+++++ .+.... .+..+++|+.|++++| .+..++ .+..+++|+.|+++
T Consensus 304 ------------~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 304 ------------PISNLKNLTYLTLYFN-NISDIS-------PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAG 361 (466)
T ss_dssp ------------GGGGCTTCSEEECCSS-CCSCCG-------GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECC
T ss_pred ------------hhcCCCCCCEEECcCC-cCCCch-------hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCC
Confidence 1346888999988877 344321 2567899999999988 455554 57788999999999
Q ss_pred cCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 839 YCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 839 ~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
+|+.....+ +..+|+|+.|++++| .++.+|
T Consensus 362 ~n~l~~~~~------~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 362 HNQISDLTP------LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp SSCCCBCGG------GTTCTTCCEEECCCE-EEECCC
T ss_pred CCccCccch------hhcCCCCCEEeccCC-cccCCc
Confidence 887654432 577889999998888 344444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.4e-26 Score=265.11 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=102.1
Q ss_pred hcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCCceE--eCcccccCCCCCCCCCCCCCCCc-----ccccCcc
Q 042981 707 TSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYGVKR--VGNEFLGIEGSSEDDPSSSSSSS-----SVIAFPK 777 (876)
Q Consensus 707 ~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~ 777 (876)
..+++|++|++++|.+.+..| .++.++ |+.|++++|..... .+..+.....+..++++.+.+.. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 466777888888887766433 467777 88888877654321 11234455556666666544322 3556788
Q ss_pred cceeeccccccccccccccccccccCcc-cccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCC
Q 042981 778 LKSLHIGAMEELEEWNYRITRKENISIM-PRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTD 856 (876)
Q Consensus 778 L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 856 (876)
|+.|+++++. +... .+. .+ ++|+.|++++| .++.+|..+..+++|+.|++++|... .++. ..+..
T Consensus 430 L~~L~l~~n~-l~~~-----~~~---~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~---~~~~~ 495 (562)
T 3a79_B 430 ILVLNLSSNM-LTGS-----VFR---CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPD---GVFDR 495 (562)
T ss_dssp CCEEECCSSC-CCGG-----GGS---SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCT---TSTTT
T ss_pred CCEEECCCCC-CCcc-----hhh---hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCH---HHHhc
Confidence 8888887763 3321 122 33 69999999999 67789988889999999999999754 4433 24778
Q ss_pred CCCcCEEEEccCC
Q 042981 857 IPRLSSLEIEYCP 869 (876)
Q Consensus 857 lp~L~~L~i~~c~ 869 (876)
+++|+.|++++||
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 8999999999986
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8.2e-26 Score=269.62 Aligned_cols=191 Identities=18% Similarity=0.127 Sum_probs=144.6
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~ 525 (876)
.++.+.+++..+|..+. ++|++|++.++. ...+++..|.++++|++|+| ++|.+..+ |..++
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDV---------GFNTISKLEPELCQ 70 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEEC---------CSSCCCCCCTTHHH
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEEC---------CCCccCccCHHHHh
Confidence 46667777777777664 799999998776 34455666899999999999 66666665 56789
Q ss_pred cCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
++++|++|+|++|.++.+|. .++++++|++|++++|......|..|+++++|++|++++|.+.+..|..++++++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 99999999999999999997 59999999999999995544445779999999999999998877778888999999998
Q ss_pred CceeecCccCCCcccccccc-------ccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 605 EKFAMGGGVDDISTCRLESL-------KNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 605 ~~~~~~~~~~~ls~~~l~~L-------~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
+++.+.+..+ ..+++|+.|+++++ .+....+..+..+.+|+.|++..+.+
T Consensus 151 ----------~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 151 ----------LLSNNKIQALKSEELDIFANSSLKKLELSSN----QIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp ----------ECCSSCCCCBCHHHHGGGTTCEESEEECTTC----CCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred ----------EccCCcccccCHHHhhccccccccEEECCCC----cccccChhhhhhhhhhhhhhcccccc
Confidence 3334444322 23577888888874 22233334455666666666655443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=9.6e-26 Score=255.51 Aligned_cols=356 Identities=15% Similarity=0.115 Sum_probs=207.0
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.++++++|+++.|.+..+ +..+.++++|++|++.++. +...+++..|..+++|++|+| ++|.+..
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~L---------s~n~l~~ 93 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKL---------DYNQFLQ 93 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEEC---------TTCTTCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeC---------CCCccCc
Confidence 467788899988888776 6778888899999887664 223444556788888999999 6666665
Q ss_pred c-ccccccCcccCeeeccCccccc-cchh--hccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCccCCcc
Q 042981 520 I-PENVRKLIHLKYLNLSELCIER-LPKT--LCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKYMPIG 594 (876)
Q Consensus 520 l-p~~i~~L~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~ 594 (876)
+ |..++++++|++|+|++|.++. +|.. ++++++|++|+|++|......|.. +.++++|++|++++|.+.+..|..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 4 6778888899999999888874 4444 888889999999888655555665 788889999999888776666666
Q ss_pred CCCC--CCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccc
Q 042981 595 ISKL--TSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEG 672 (876)
Q Consensus 595 i~~l--~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 672 (876)
+..+ .+|+.| +++.+.+..+... .........+..+++|+.|++++|.+.+..
T Consensus 174 l~~l~~~~L~~L----------~l~~n~l~~~~~~---------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 174 LLNFQGKHFTLL----------RLSSITLQDMNEY---------------WLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp SGGGTTCEEEEE----------ECTTCBCTTCSTT---------------CTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred hhcccccccccc----------ccccCcccccchh---------------hccccccccccccceeeeEecCCCcccccc
Confidence 6554 334444 2222222221110 000111112334455566666555543111
Q ss_pred cchHHHHHhhCCCCCCccEEEEeecCCCC-------C----Cchhh--cccCCcEEEEecCCCCCCCC-CCCccc-CceE
Q 042981 673 RRKNQQLLEALQPPLNVKELGIVSYGGNI-------F----PKWLT--SLTNLRDLRLKSCVICEHFP-PLGKLP-LEKL 737 (876)
Q Consensus 673 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------l----p~~l~--~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L 737 (876)
...+.......+|+.|.+.++.... + +..+. ..++|+.|++++|.+.+..| .++.++ |+.|
T Consensus 229 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 229 ----AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp ----HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ----hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 1111111223455555555442111 0 11111 23566777777776655433 256666 7777
Q ss_pred eecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCc
Q 042981 738 TLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCP 817 (876)
Q Consensus 738 ~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 817 (876)
++++|......+.. +..+++|+.|+++++ .+... .+..+..+++|++|++++|.
T Consensus 305 ~Ls~n~l~~~~~~~--------------------~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 305 TLAQNEINKIDDNA--------------------FWGLTHLLKLNLSQN-FLGSI-----DSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp ECTTSCCCEECTTT--------------------TTTCTTCCEEECCSS-CCCEE-----CGGGGTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhH--------------------hcCcccCCEEECCCC-ccCCc-----ChhHhcCcccCCEEECCCCc
Confidence 77666543322221 234566666666555 23222 12345566666666666664
Q ss_pred cCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCC
Q 042981 818 RLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 818 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
.....|..+..+++|++|++++|+.. .++ ...+..+++|+.|++++|+
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLK-SVP---DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-CCC---TTTTTTCTTCCEEECCSSC
T ss_pred ccccChhhccccccccEEECCCCccc-cCC---HhHhccCCcccEEEccCCC
Confidence 44444556666666666666666433 221 1234566666666666654
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=273.88 Aligned_cols=389 Identities=18% Similarity=0.137 Sum_probs=263.4
Q ss_pred CCceEEEEeeecCC-CCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGG-ASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~-~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
-.+++.|+++.|.. ..+ +..|.++++|++|++.+|. ...+.+..|.++++|++|+| ++|.+..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~------l~~~~p~~~~~l~~L~~L~L---------s~n~l~~ 111 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK------IYFLHPDAFQGLFHLFELRL---------YFCGLSD 111 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC------CCEECTTSSCSCSSCCCEEC---------TTCCCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc------CcccCHhHccCCcccCEeeC---------cCCCCCc
Confidence 46789999998843 344 6778999999999997765 33445566889999999999 5555554
Q ss_pred -cccc--cccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCccccccccCc--CCCceEecCCCCCCccCC
Q 042981 520 -IPEN--VRKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPAGIGKL--KKMRSLLNGGTPLLKYMP 592 (876)
Q Consensus 520 -lp~~--i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~~~~~p 592 (876)
+|.. ++++++|++|+|++|.++.++ ..++++++|++|+|++|......|..+..+ ++|+.|++++|.+.+..|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 4544 788999999999999988653 568999999999999986666667777766 677777777776666666
Q ss_pred ccCCCCCC------CCccCceeecC----------------------------------------------------ccC
Q 042981 593 IGISKLTS------LRTLEKFAMGG----------------------------------------------------GVD 614 (876)
Q Consensus 593 ~~i~~l~~------L~~L~~~~~~~----------------------------------------------------~~~ 614 (876)
..++.+.+ |+.|......- ..-
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 55544443 44433221100 000
Q ss_pred CCccccc-----cccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCc
Q 042981 615 DISTCRL-----ESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNV 689 (876)
Q Consensus 615 ~ls~~~l-----~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L 689 (876)
+++.+.+ ..+..+++|+.|++++ +.+....+..+.++++|+.|++++|.+.... ...+..+++|
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L 340 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAY----NKINKIADEAFYGLDNLQVLNLSYNLLGELY-------SSNFYGLPKV 340 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEES----CCCCEECTTTTTTCSSCCEEEEESCCCSCCC-------SCSCSSCTTC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCC----CcCCCCChHHhcCCCCCCEEECCCCCCCccC-------HHHhcCCCCC
Confidence 1222322 2356788999999988 3444455567889999999999999874221 2356677899
Q ss_pred cEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCCC--CCC--------------------------------------
Q 042981 690 KELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICEH--FPP-------------------------------------- 728 (876)
Q Consensus 690 ~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~--lp~-------------------------------------- 728 (876)
+.|++++|....++. .+..+++|+.|+|++|.+.+. +|.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 999999998877754 577899999999999987531 010
Q ss_pred -CCccc-CceEeecCCCCceEeCc-ccccCCCCCCCCCCCCCC---------CcccccCcccceeecccccccccccccc
Q 042981 729 -LGKLP-LEKLTLYGLYGVKRVGN-EFLGIEGSSEDDPSSSSS---------SSSVIAFPKLKSLHIGAMEELEEWNYRI 796 (876)
Q Consensus 729 -l~~Lp-L~~L~L~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~---------~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 796 (876)
++.+| |+.|+|++|........ .+.....+..++++.+.+ +..+..+++|+.|+++++ .+. +
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~-----~ 494 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLN-----S 494 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHT-----T
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccc-----c
Confidence 11345 55566655543322111 122233444444443332 234566788888877665 343 3
Q ss_pred ccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCC
Q 042981 797 TRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKL 871 (876)
Q Consensus 797 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L 871 (876)
..+..+..+++|+.|+|++| .++.+|..... ++|+.|++++|...... ...+++|+.|+++++|-.
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~-------~~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISRNQLLAPN-------PDVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEEECCCCCC-------SCCCSSCCEEEEEEECCC
T ss_pred cChhHccchhhhheeECCCC-CCCccChhhhh-ccccEEECCCCcCCCCC-------hhHhCCcCEEEecCCCcc
Confidence 33456789999999999999 56667665444 89999999999765433 244679999999987643
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=259.53 Aligned_cols=365 Identities=15% Similarity=0.082 Sum_probs=249.3
Q ss_pred CCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc-
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE- 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~- 519 (876)
..++++|+++.|.+..+ +..|.++++|++|++.+|. ...++.. .+++|++|+| ++|.+..
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~---~l~~L~~L~L---------~~N~l~~~ 105 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK------LVKISCH---PTVNLKHLDL---------SFNAFDAL 105 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC------CCEEECC---CCCCCSEEEC---------CSSCCSSC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc------eeecCcc---ccCCccEEec---------cCCccccc
Confidence 46899999999999887 7789999999999998776 2233332 7999999999 6777665
Q ss_pred -cccccccCcccCeeeccCccccccchhhccCCcc--cEEeecCCCC--CccccccccC---------------------
Q 042981 520 -IPENVRKLIHLKYLNLSELCIERLPKTLCELYNL--QKLDIRWCED--LRELPAGIGK--------------------- 573 (876)
Q Consensus 520 -lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L--~~L~L~~~~~--l~~lp~~i~~--------------------- 573 (876)
+|..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|..+..
T Consensus 106 ~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 106 PICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp CCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC
T ss_pred cchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh
Confidence 57899999999999999999886 457788888 9999999966 4555655554
Q ss_pred -----cCCCceEecCCCC-------CCccCCccCCCCCCCCccCceeecCccCCCcccccccc---ccCCCCCCeeeeCc
Q 042981 574 -----LKKMRSLLNGGTP-------LLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESL---KNLQLLRECGIEGL 638 (876)
Q Consensus 574 -----L~~L~~L~l~~~~-------~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L---~~L~~L~~L~l~~~ 638 (876)
+++|+.|++++|. +.+.+| .++.+++|+.|......-. ++.+..+ ..+++|+.|+++++
T Consensus 184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~-----~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT-----WNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE-----HHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC-----HHHHHHHHHHhhhCcccEEEeecc
Confidence 6778888887775 334444 5777888887743322110 1111111 11335556665553
Q ss_pred CCCCCcchhhhccC-----cccccCCceEEEeccCCccccchHHHHH------------------hhCCCCCCccEEEEe
Q 042981 639 SNVSHLDEDERLGL-----HNMKNLLRLSLEFDEEGEEGRRKNQQLL------------------EALQPPLNVKELGIV 695 (876)
Q Consensus 639 ~~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~~~~~~------------------~~l~~~~~L~~L~l~ 695 (876)
. +.+..+..+ .++++|+.++++.|.+. .........+ .....+++|+.|+++
T Consensus 258 ~----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 258 K----LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp E----EESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred c----ccCccccchhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 2 111122222 44445555555544431 0000000000 001456789999999
Q ss_pred ecCCCC-CCchhhcccCCcEEEEecCCCCC--CCC-CCCccc-CceEeecCCCCceEeCc-ccccCCCCCCCCCCCCCCC
Q 042981 696 SYGGNI-FPKWLTSLTNLRDLRLKSCVICE--HFP-PLGKLP-LEKLTLYGLYGVKRVGN-EFLGIEGSSEDDPSSSSSS 769 (876)
Q Consensus 696 ~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~--~lp-~l~~Lp-L~~L~L~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~ 769 (876)
++.... +|.++..+++|++|+|++|.+.+ .+| .++.++ |+.|++++|.....++. .+.....+..++++.+.+.
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 888765 68888899999999999998865 333 367888 99999998876552333 3555667777777776654
Q ss_pred cc-cccC-cccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCC-CCCCCCccEEEEecCCCchh
Q 042981 770 SS-VIAF-PKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDY-LFQSTTLQKLSISYCPIMEE 845 (876)
Q Consensus 770 ~~-~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~ 845 (876)
.. ...+ ++|+.|+++++ .+..+ +..+..+++|+.|++++| .++.+|.. +..+++|++|++++|+....
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N-~l~~i------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSN-KIKSI------PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GGGGGSCCTTCCEEECCSS-CCCCC------CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhhhcccCCEEECCCC-ccccc------chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCccc
Confidence 32 2234 69999999988 45533 445668999999999999 56688886 88899999999999987543
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=8.6e-26 Score=250.08 Aligned_cols=303 Identities=19% Similarity=0.146 Sum_probs=214.2
Q ss_pred CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccccc
Q 042981 464 GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIER 542 (876)
Q Consensus 464 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~ 542 (876)
.+++++.|.+.++. ...++..+|..+++|++|++ ++|.+..+| ..+..+++|++|+|++|.++.
T Consensus 43 ~l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~L---------~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNL---------NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GGCCCSEEEEESCE------ESEECTHHHHHCCCCSEEEC---------TTSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCceEEEecCCc------hhhCChhHhcccccCcEEEC---------CCCcccccChhhccCCCCcCEEECCCCCCCc
Confidence 45788888887664 45566667788888888888 666677665 467888888888888888887
Q ss_pred cch-hhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccc
Q 042981 543 LPK-TLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCR 620 (876)
Q Consensus 543 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~ 620 (876)
+|+ .++++++|++|++++| .+..+|.. +.++++|++|++++|.+....|..++.+++|++| +++.+.
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L----------~l~~n~ 176 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL----------QLSSNR 176 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE----------ECCSSC
T ss_pred CCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE----------ECCCCc
Confidence 754 5788888888888888 45667665 4788888888888887766666667888888888 333444
Q ss_pred ccc--cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecC
Q 042981 621 LES--LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYG 698 (876)
Q Consensus 621 l~~--L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 698 (876)
+.. +..+++|+.|++++. .+. .+....+|+.|++++|.+.... ...+++|+.|++.++.
T Consensus 177 l~~~~~~~l~~L~~L~l~~n----~l~-----~~~~~~~L~~L~l~~n~l~~~~----------~~~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 177 LTHVDLSLIPSLFHANVSYN----LLS-----TLAIPIAVEELDASHNSINVVR----------GPVNVELTILKLQHNN 237 (390)
T ss_dssp CSBCCGGGCTTCSEEECCSS----CCS-----EEECCSSCSEEECCSSCCCEEE----------CCCCSSCCEEECCSSC
T ss_pred CCccccccccccceeecccc----ccc-----ccCCCCcceEEECCCCeeeecc----------ccccccccEEECCCCC
Confidence 432 455677777777662 111 1234457888888887664221 1224678888888887
Q ss_pred CCCCCchhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCc
Q 042981 699 GNIFPKWLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFP 776 (876)
Q Consensus 699 ~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 776 (876)
.... .++..+++|++|+|++|.+.+..| .++.++ |+.|++++|...... . ....++
T Consensus 238 l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~--------------------~~~~l~ 295 (390)
T 3o6n_A 238 LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L--------------------YGQPIP 295 (390)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-C--------------------SSSCCT
T ss_pred Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-c--------------------ccCCCC
Confidence 7764 577888888888888888776433 467788 888888887643321 1 123578
Q ss_pred ccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCc
Q 042981 777 KLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIM 843 (876)
Q Consensus 777 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 843 (876)
+|+.|+++++ .+... +..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+.-
T Consensus 296 ~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCC-cceec------CccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence 8888888877 45433 3345678888889988884 55555 566888888888888753
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-25 Score=260.40 Aligned_cols=303 Identities=19% Similarity=0.152 Sum_probs=225.1
Q ss_pred CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccccc
Q 042981 464 GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIER 542 (876)
Q Consensus 464 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~ 542 (876)
.+++++.|.+.++. ...+++.+|..+++|++|+| ++|.+..+| ..|+.+++|++|+|++|.++.
T Consensus 49 ~l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~L---------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNL---------NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113 (597)
T ss_dssp GGCCCSEEEESSCE------ESEECTHHHHHCCCCSEEEC---------TTSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCceEEEeeCCC------CCCcCHHHHccCCCCcEEEC---------CCCCCCCCChHHhcCCCCCCEEECCCCcCCC
Confidence 45788888886654 45567777888999999999 667777765 478889999999999999887
Q ss_pred cch-hhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccc
Q 042981 543 LPK-TLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCR 620 (876)
Q Consensus 543 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~ 620 (876)
+|+ .++++++|++|+|++| .+..+|.. |+++++|++|++++|.+.+..|..++++++|++| +++++.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L----------~L~~N~ 182 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL----------QLSSNR 182 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE----------ECTTSC
T ss_pred CCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE----------ECcCCC
Confidence 775 4688999999999988 45566665 5889999999999998877677778888888888 444444
Q ss_pred ccc--cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecC
Q 042981 621 LES--LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYG 698 (876)
Q Consensus 621 l~~--L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 698 (876)
+.. +..+++|+.|++++. .+. .+....+|+.|++++|.+..... ..+++|+.|++.++.
T Consensus 183 l~~~~~~~l~~L~~L~l~~n----~l~-----~l~~~~~L~~L~ls~n~l~~~~~----------~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 183 LTHVDLSLIPSLFHANVSYN----LLS-----TLAIPIAVEELDASHNSINVVRG----------PVNVELTILKLQHNN 243 (597)
T ss_dssp CSBCCGGGCTTCSEEECCSS----CCS-----EEECCTTCSEEECCSSCCCEEEC----------SCCSCCCEEECCSSC
T ss_pred CCCcChhhhhhhhhhhcccC----ccc-----cccCCchhheeeccCCccccccc----------ccCCCCCEEECCCCC
Confidence 443 456777777877763 221 13445678889988887642211 123689999999888
Q ss_pred CCCCCchhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCc
Q 042981 699 GNIFPKWLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFP 776 (876)
Q Consensus 699 ~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 776 (876)
... +.++..+++|+.|+|++|.+.+..| .++.++ |+.|+|++|...... . ....+|
T Consensus 244 l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~--------------------~~~~l~ 301 (597)
T 3oja_B 244 LTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L--------------------YGQPIP 301 (597)
T ss_dssp CCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-C--------------------SSSCCT
T ss_pred CCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-c--------------------ccccCC
Confidence 776 6788899999999999998877544 578888 999999988654321 1 123588
Q ss_pred ccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCc
Q 042981 777 KLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIM 843 (876)
Q Consensus 777 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 843 (876)
+|+.|+++++ .+..+ +..+..+++|+.|+|++|. +..+| +..+++|+.|++++|+.-
T Consensus 302 ~L~~L~Ls~N-~l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 302 TLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCcEEECCCC-CCCcc------CcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999998887 34432 4456688999999999984 55555 566889999999999854
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.4e-25 Score=260.60 Aligned_cols=370 Identities=17% Similarity=0.109 Sum_probs=238.5
Q ss_pred CCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc-
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE- 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~- 519 (876)
..++++|+++.|.+..+ +..|.++++|++|++.+|. ....++..|..+++|++|++ ++|.+..
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~ 113 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH------LSSLSSSWFGPLSSLKYLNL---------MGNPYQTL 113 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCSCCHHHHTTCTTCCEEEC---------TTCCCSSS
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCc------cCccCHHHhccCCCCcEEEC---------CCCccccc
Confidence 46789999999988776 4678899999999997775 34456666889999999999 5555553
Q ss_pred -cccccccCcccCeeeccCcc-ccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccC-
Q 042981 520 -IPENVRKLIHLKYLNLSELC-IERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGI- 595 (876)
Q Consensus 520 -lp~~i~~L~~Lr~L~Ls~~~-i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i- 595 (876)
+|..++++++|++|++++|. +..+| ..++++++|++|++++|......|..+.++++|++|++++|.. ..+|..+
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~ 192 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFA 192 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHH
T ss_pred chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhH
Confidence 35667788888888888887 56666 4677888888888888765555666666655555555554432 1222111
Q ss_pred CCCCCCCccCceeecCccC---------------------------------------------CCccccc---------
Q 042981 596 SKLTSLRTLEKFAMGGGVD---------------------------------------------DISTCRL--------- 621 (876)
Q Consensus 596 ~~l~~L~~L~~~~~~~~~~---------------------------------------------~ls~~~l--------- 621 (876)
+.+++|+.|......-... +++.+.+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 1233333331111000000 0000000
Q ss_pred --cccccCC-----------------------------CCCCeeeeCcCCCCCcchhhhccC-cccccCCceEEEeccCC
Q 042981 622 --ESLKNLQ-----------------------------LLRECGIEGLSNVSHLDEDERLGL-HNMKNLLRLSLEFDEEG 669 (876)
Q Consensus 622 --~~L~~L~-----------------------------~L~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~ 669 (876)
..+..+. +|+.|.+++.. +.. .+..+ ..+++|+.|++++|.+.
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~----ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL----VPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC----CCHHHHHHCTTCCEEECCSSCCC
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-ccc----CCHHHHhcCccccEEEccCCccc
Confidence 0011122 23333333311 111 11112 45788888888888763
Q ss_pred ccccchHHHHHhhCCCCCCccEEEEeecCCCCCC---chhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCc
Q 042981 670 EEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFP---KWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGV 745 (876)
Q Consensus 670 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp---~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l 745 (876)
+. .......+...++|+.|++++|....+| ..+..+++|++|+|++|++....+.++.++ |+.|++++|...
T Consensus 348 ~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 348 EE----YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp HH----HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cc----cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 11 0011233566789999999999887765 347789999999999998874334477788 999999998743
Q ss_pred eEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCC
Q 042981 746 KRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDY 825 (876)
Q Consensus 746 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 825 (876)
. ++..+ ...+..++++.+.+......+++|++|+++++ .++.+ +. ...+++|+.|++++|......|..
T Consensus 424 ~-l~~~~--~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i------p~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 424 V-VKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL------PD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp C-CCTTS--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC------CC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred c-ccchh--cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC------CC-cccCccCCEEecCCCccCCcCHHH
Confidence 2 22222 13566777777777666678999999999988 45533 32 457999999999999655555566
Q ss_pred CCCCCCccEEEEecCCCchhhc
Q 042981 826 LFQSTTLQKLSISYCPIMEELR 847 (876)
Q Consensus 826 l~~l~~L~~L~l~~~~~l~~l~ 847 (876)
+..+++|+.|++++|+.....+
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 8899999999999999765543
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.1e-24 Score=237.19 Aligned_cols=300 Identities=19% Similarity=0.201 Sum_probs=151.3
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
++++++.++++.+..++ .+..+++|++|++.++. ...++. +..+++|++|++ ++|.+..+|
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~------i~~~~~--~~~l~~L~~L~L---------~~n~i~~~~- 104 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ------ITDISP--LSNLVKLTNLYI---------GTNKITDIS- 104 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEEC---------CSSCCCCCG-
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCc------cccchh--hhcCCcCCEEEc---------cCCcccCch-
Confidence 34555555555554432 24455555555554443 111111 445555555555 334344433
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
.+.++++|++|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|.+.. ++. ++
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~------ 174 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IA------ 174 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GG------
T ss_pred HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hc------
Confidence 34555555555555555555544 55555555555555543333332 5555555555555553321 111 23
Q ss_pred ccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhh
Q 042981 603 TLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEA 682 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 682 (876)
.+++|+.|+++++.. .... .+..+++|+.|++++|.+
T Consensus 175 -----------------------~l~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l-------------- 211 (347)
T 4fmz_A 175 -----------------------NLTDLYSLSLNYNQI-EDIS-----PLASLTSLHYFTAYVNQI-------------- 211 (347)
T ss_dssp -----------------------GCTTCSEEECTTSCC-CCCG-----GGGGCTTCCEEECCSSCC--------------
T ss_pred -----------------------cCCCCCEEEccCCcc-cccc-----cccCCCccceeecccCCC--------------
Confidence 333344444443211 1110 034455555555555543
Q ss_pred CCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCC
Q 042981 683 LQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSED 761 (876)
Q Consensus 683 l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~ 761 (876)
..++. +..+++|++|++++|.+.+. +.++.++ |+.|++++|.....
T Consensus 212 -----------------~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-------------- 258 (347)
T 4fmz_A 212 -----------------TDITP-VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDI-------------- 258 (347)
T ss_dssp -----------------CCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--------------
T ss_pred -----------------CCCch-hhcCCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCccCCC--------------
Confidence 22222 44556666666666655432 2255556 66666665532211
Q ss_pred CCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCC
Q 042981 762 DPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCP 841 (876)
Q Consensus 762 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 841 (876)
..+..+++|+.|+++++ .+..+ +.+..+++|+.|++++|+.....|..+..+++|+.|++++|+
T Consensus 259 --------~~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 --------NAVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --------GGGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred --------hhHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 01234666777766665 33332 134567777777777775544555556667777777777776
Q ss_pred CchhhccccccCCCCCCCcCEEEEccCC
Q 042981 842 IMEELRILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 842 ~l~~l~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
.....+ +..+|+|+.|++++|+
T Consensus 323 l~~~~~------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 ITDIRP------LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCCGG------GGGCTTCSEESSSCC-
T ss_pred cccccC------hhhhhccceeehhhhc
Confidence 443221 3566777777777773
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.5e-24 Score=257.05 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=122.1
Q ss_pred CCCceEEEEeeecCCCCCc-ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASFP-MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.|..+++|++++|.++.++ ..|.++++|++|++.+|. +..+++.+|.++++|++|+| ++|.+..
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~L---------s~N~l~~ 114 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLIL---------TGNPIQS 114 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEEC---------TTCCCCE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEc---------cCCcCCC
Confidence 3678999999999999884 679999999999998776 45566777999999999999 7888888
Q ss_pred ccc-ccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCc-cccccccCcCCCceEecCCCCCCccCCccCC
Q 042981 520 IPE-NVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLR-ELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 520 lp~-~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
+|. .|.+|.+|++|+|++|.++.+|. .|+++++|++|++++|.... .+|..+..+++|++|++++|.+.+..|..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 885 57999999999999999999986 58999999999999995433 4688899999999999999987665555554
Q ss_pred CCCC
Q 042981 597 KLTS 600 (876)
Q Consensus 597 ~l~~ 600 (876)
.+.+
T Consensus 195 ~L~~ 198 (635)
T 4g8a_A 195 VLHQ 198 (635)
T ss_dssp HHHT
T ss_pred chhh
Confidence 4433
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=244.93 Aligned_cols=259 Identities=21% Similarity=0.204 Sum_probs=169.2
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~ 525 (876)
.+..+.+.+..+|..+. ++++.|++.+|. ...+.+..|..+++|++|+| ++|.+..+ |..++
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNR------IKTLNQDEFASFPHLEELEL---------NENIVSAVEPGAFN 77 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSC------CCEECTTTTTTCTTCCEEEC---------TTSCCCEECTTTTT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCc------cceECHhHccCCCCCCEEEC---------CCCccCEeChhhhh
Confidence 45555566666666553 588888887765 33444555888899999999 66666665 67788
Q ss_pred cCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
++++|++|+|++|.++.+|.. +.++++|++|+|++|......|..+.++++|++|++++|.+....|..++++++|++|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 899999999999998888864 6888999999999886666667788889999999999988776667778888888887
Q ss_pred CceeecCccCCCcccccc-----ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHH
Q 042981 605 EKFAMGGGVDDISTCRLE-----SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQL 679 (876)
Q Consensus 605 ~~~~~~~~~~~ls~~~l~-----~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 679 (876)
. ++.+.+. .+..+++|+.|++++. .+.......+..+++|+.|++++|......+
T Consensus 158 ~----------l~~n~l~~~~~~~l~~l~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------ 217 (477)
T 2id5_A 158 T----------LEKCNLTSIPTEALSHLHGLIVLRLRHL----NINAIRDYSFKRLYRLKVLEISHWPYLDTMT------ 217 (477)
T ss_dssp E----------EESCCCSSCCHHHHTTCTTCCEEEEESC----CCCEECTTCSCSCTTCCEEEEECCTTCCEEC------
T ss_pred E----------CCCCcCcccChhHhcccCCCcEEeCCCC----cCcEeChhhcccCcccceeeCCCCccccccC------
Confidence 3 2233332 2456667777777663 2233333456677777777777664421110
Q ss_pred HhhCCCCCCccEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCCCCC-CCCccc-CceEeecCCC
Q 042981 680 LEALQPPLNVKELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICEHFP-PLGKLP-LEKLTLYGLY 743 (876)
Q Consensus 680 ~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~L~L~~~~ 743 (876)
.......+|+.|++.++....+|. .+..+++|+.|+|++|.+.+..+ .+..++ |+.|+|++|.
T Consensus 218 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 218 -PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp -TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred -cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 111122356666666665555553 34456666666666665543222 244555 5555555554
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.9e-24 Score=251.31 Aligned_cols=359 Identities=15% Similarity=0.044 Sum_probs=224.1
Q ss_pred CCceEEEEeeecCCCCCc-ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFP-MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
++.+++|+++.|.+..++ ..|.++++|++|++.+|. ...+.+..|..+++|++|+| ++|.+..+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~L---------s~N~l~~l 115 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDV---------SHNRLQNI 115 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEEC---------TTSCCCEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEEC---------CCCcCCcc
Confidence 467778888887777663 567777888888886665 23444555777788888888 66666677
Q ss_pred ccccccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCccccccccCcCCC--ceEecCCCCC--CccCCcc
Q 042981 521 PENVRKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKM--RSLLNGGTPL--LKYMPIG 594 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~ 594 (876)
|.. .+++|++|+|++|.++.+| ..++++++|++|++++|.... ..+..+++| ++|++++|.+ .+..|..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCccc
Confidence 765 6778888888888777654 677788888888888774332 234555555 7777777766 4445544
Q ss_pred CCCCC--------------------------CCCccCceeecCcc--------------------------CCCcccccc
Q 042981 595 ISKLT--------------------------SLRTLEKFAMGGGV--------------------------DDISTCRLE 622 (876)
Q Consensus 595 i~~l~--------------------------~L~~L~~~~~~~~~--------------------------~~ls~~~l~ 622 (876)
+..+. +|+.| .+.... .+++.+.+.
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L---~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS---NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE---EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEe---cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 43332 22222 111000 000000000
Q ss_pred c---cccCCCCCCeeeeCcCCCCCcchhhhccC-----ccccc--------------------------CCceEEEeccC
Q 042981 623 S---LKNLQLLRECGIEGLSNVSHLDEDERLGL-----HNMKN--------------------------LLRLSLEFDEE 668 (876)
Q Consensus 623 ~---L~~L~~L~~L~l~~~~~~~~~~~~~~~~l-----~~l~~--------------------------L~~L~L~~~~~ 668 (876)
. .....+|+.|+++++..... .+..+ .+++. |+.|+++.|.+
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~----ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITER----IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSC----CCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHhhhcccccEEEEeccEeecc----ccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0 00112455566655321111 11111 23333 44444444433
Q ss_pred CccccchHHHHHhhCCCCCCccEEEEeecCCCC-CCchhhcccCCcEEEEecCCCCC--CCC-CCCccc-CceEeecCCC
Q 042981 669 GEEGRRKNQQLLEALQPPLNVKELGIVSYGGNI-FPKWLTSLTNLRDLRLKSCVICE--HFP-PLGKLP-LEKLTLYGLY 743 (876)
Q Consensus 669 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~--~lp-~l~~Lp-L~~L~L~~~~ 743 (876)
... .....+++|+.|++.++.... +|.++..+++|++|+|++|.+.+ .+| .++.++ |+.|++++|.
T Consensus 344 ~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 344 IHM---------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp CCC---------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred ccc---------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 110 001456788888888887665 57788888899999999988764 222 367888 9999998887
Q ss_pred CceEeC-cccccCCCCCCCCCCCCCCCcc-cccC-cccceeeccccccccccccccccccccCcccccceeeeccCccCC
Q 042981 744 GVKRVG-NEFLGIEGSSEDDPSSSSSSSS-VIAF-PKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLR 820 (876)
Q Consensus 744 ~l~~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 820 (876)
....++ ..+.....+..++++.+.+... ...+ ++|+.|+++++ .++.+ +..+..+++|+.|++++| .++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~i------p~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSI------PKDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCC------CTTTTSSCCCSEEECCSS-CCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCccc------ChhhcCCCCCCEEECCCC-CCC
Confidence 655233 3355566677777776665432 3344 69999999888 56543 445568999999999999 566
Q ss_pred CCCCC-CCCCCCccEEEEecCCCch
Q 042981 821 VLPDY-LFQSTTLQKLSISYCPIME 844 (876)
Q Consensus 821 ~lp~~-l~~l~~L~~L~l~~~~~l~ 844 (876)
.+|.. +..+++|+.|++++|+...
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 88887 8899999999999998754
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=4.5e-24 Score=241.71 Aligned_cols=347 Identities=16% Similarity=0.128 Sum_probs=235.5
Q ss_pred EEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-cc-ccccc
Q 042981 448 LGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR-EI-PENVR 525 (876)
Q Consensus 448 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~l-p~~i~ 525 (876)
+....+++..+|. + .++|++|++.+|. ...+.+..|.++++|++|++ ++|.+. .+ |..+.
T Consensus 15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L---------~~n~~~~~i~~~~~~ 76 (455)
T 3v47_A 15 AICINRGLHQVPE-L--PAHVNYVDLSLNS------IAELNETSFSRLQDLQFLKV---------EQQTPGLVIRNNTFR 76 (455)
T ss_dssp EECCSSCCSSCCC-C--CTTCCEEECCSSC------CCEECTTTTSSCTTCCEEEC---------CCCSTTCEECTTTTT
T ss_pred cCcCCCCcccCCC-C--CCccCEEEecCCc------cCcCChhHhccCccccEEEC---------cCCcccceECccccc
Confidence 4445556666665 3 3789999997765 23444555888999999999 555554 44 45678
Q ss_pred cCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCcccccc--ccCcCCCceEecCCCCCCccCCcc-CCCCCCC
Q 042981 526 KLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAG--IGKLKKMRSLLNGGTPLLKYMPIG-ISKLTSL 601 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L 601 (876)
++++|++|+|++|.++.+ |..++++++|++|++++|......|.. +.++++|++|++++|.+.+..|.. ++++++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 889999999999988866 678889999999999988554445555 888899999999998776655654 6677777
Q ss_pred CccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCccc--ccCCceEEEeccCCccccc-hHHH
Q 042981 602 RTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNM--KNLLRLSLEFDEEGEEGRR-KNQQ 678 (876)
Q Consensus 602 ~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~-~~~~ 678 (876)
++| +++.+.+... .+..+..+ .+|+.|+++.|.+...... ....
T Consensus 157 ~~L----------~L~~n~l~~~-----------------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 203 (455)
T 3v47_A 157 HVL----------DLTFNKVKSI-----------------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203 (455)
T ss_dssp CEE----------ECTTCCBSCC-----------------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred cEE----------eCCCCccccc-----------------------ChhhhhccccccccccccccCcccccchhhcccc
Confidence 777 3333333221 11112222 4566667666655321111 0112
Q ss_pred HHhhCCCCCCccEEEEeecCCCC-CCchhhc---ccCCcEEEEecCCCCCCCCC-----------CCc--cc-CceEeec
Q 042981 679 LLEALQPPLNVKELGIVSYGGNI-FPKWLTS---LTNLRDLRLKSCVICEHFPP-----------LGK--LP-LEKLTLY 740 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~-lp~~l~~---l~~L~~L~L~~~~~~~~lp~-----------l~~--Lp-L~~L~L~ 740 (876)
....+...++|+.|+++++.... .|.++.. .++|+.|++++|...+.... +.. .+ |+.|+++
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 22334455789999998887543 3555553 38999999999865442111 122 25 8888888
Q ss_pred CCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCC
Q 042981 741 GLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLR 820 (876)
Q Consensus 741 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 820 (876)
+|......+. .+..+++|+.|+++++ .+.. ..+..+..+++|+.|++++|....
T Consensus 284 ~n~l~~~~~~--------------------~~~~l~~L~~L~Ls~n-~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 284 KSKIFALLKS--------------------VFSHFTDLEQLTLAQN-EINK-----IDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp SSCCCEECTT--------------------TTTTCTTCCEEECTTS-CCCE-----ECTTTTTTCTTCCEEECCSSCCCE
T ss_pred Cccccccchh--------------------hcccCCCCCEEECCCC-cccc-----cChhHhcCcccCCEEECCCCccCC
Confidence 8775544332 2446899999998877 3433 224567789999999999996555
Q ss_pred CCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCCC
Q 042981 821 VLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLPD 876 (876)
Q Consensus 821 ~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP~ 876 (876)
..|..+..+++|++|++++|......+ ..+..+|+|++|++++| +++.+|+
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cChhHhcCcccCCEEECCCCcccccCh----hhccccccccEEECCCC-ccccCCH
Confidence 557788999999999999997543322 35788999999999998 6887774
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=9.9e-24 Score=239.12 Aligned_cols=319 Identities=20% Similarity=0.248 Sum_probs=251.4
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
..++++|+++.|.+..++. +..+++|++|++.++.. ...++ +..+++|++|++ ++|.+..+|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l------~~~~~--~~~l~~L~~L~L---------~~n~l~~~~ 128 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI------ADITP--LANLTNLTGLTL---------FNNQITDID 128 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEEC---------CSSCCCCCG
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc------ccChh--hcCCCCCCEEEC---------CCCCCCCCh
Confidence 5789999999999988766 89999999999987752 22233 889999999999 777777776
Q ss_pred cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSL 601 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 601 (876)
. +.++++|++|++++|.+..+|. ++++++|++|+++++ ...++. +.++++|++|++++|.+. .++ .+..+++|
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L 201 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVS-DIS-VLAKLTNL 201 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCC-CCh-hhccCCCC
Confidence 5 8999999999999999999875 999999999999743 444544 899999999999999763 343 47788888
Q ss_pred CccCceeecCccCCCcccccc---ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 602 RTLEKFAMGGGVDDISTCRLE---SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 602 ~~L~~~~~~~~~~~ls~~~l~---~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
+.|. ++.+.+. .+..+++|+.|+++++.. ... ..+..+++|+.|++++|.+....
T Consensus 202 ~~L~----------l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~------ 259 (466)
T 1o6v_A 202 ESLI----------ATNNQISDITPLGILTNLDELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQISNLA------ 259 (466)
T ss_dssp SEEE----------CCSSCCCCCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCG------
T ss_pred CEEE----------ecCCcccccccccccCCCCEEECCCCCc-ccc-----hhhhcCCCCCEEECCCCccccch------
Confidence 8883 3333332 356788999999988532 222 24778899999999999875321
Q ss_pred HHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCC
Q 042981 679 LLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEG 757 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~ 757 (876)
.+..+++|+.|++.++....+|. +..+++|+.|+|++|.+.+ +++++.++ |+.|++++|......
T Consensus 260 ---~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~--------- 325 (466)
T 1o6v_A 260 ---PLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--------- 325 (466)
T ss_dssp ---GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCG---------
T ss_pred ---hhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCcCCCch---------
Confidence 15567899999999999888776 7899999999999999865 44588999 999999998643221
Q ss_pred CCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEE
Q 042981 758 SSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSI 837 (876)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 837 (876)
.+..+++|+.|+++++ .+... ..+..+++|+.|++++|+.....| +..+++|+.|++
T Consensus 326 -------------~~~~l~~L~~L~l~~n-~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 326 -------------PVSSLTKLQRLFFYNN-KVSDV-------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp -------------GGGGCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred -------------hhccCccCCEeECCCC-ccCCc-------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 1347899999999887 45443 356789999999999996555444 788999999999
Q ss_pred ecCCCch
Q 042981 838 SYCPIME 844 (876)
Q Consensus 838 ~~~~~l~ 844 (876)
++|+...
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 9997543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-23 Score=235.95 Aligned_cols=284 Identities=19% Similarity=0.156 Sum_probs=160.7
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI 571 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 571 (876)
+..+++|++|++ ++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|++++| .+..+| +
T Consensus 60 l~~l~~L~~L~L---------s~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~ 123 (457)
T 3bz5_A 60 IEKLTGLTKLIC---------TSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--V 123 (457)
T ss_dssp GGGCTTCSEEEC---------CSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred hcccCCCCEEEc---------cCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--C
Confidence 444555555555 333334443 445555555555555555443 455555555555555 233333 4
Q ss_pred cCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccc-ccc--ccccCCCCCCeeeeCcCCCCCcchhh
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTC-RLE--SLKNLQLLRECGIEGLSNVSHLDEDE 648 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~-~l~--~L~~L~~L~~L~l~~~~~~~~~~~~~ 648 (876)
+.+++|++|++++|.+.+ +| ++.+++|+.|.. +.+ .+. .+..+++|+.|+++++. +...
T Consensus 124 ~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l----------~~n~~~~~~~~~~l~~L~~L~ls~n~----l~~l- 185 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC----------HLNKKITKLDVTPQTQLTTLDCSFNK----ITEL- 185 (457)
T ss_dssp TTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC----------TTCSCCCCCCCTTCTTCCEEECCSSC----CCCC-
T ss_pred CCCCcCCEEECCCCccce-ec--cccCCcCCEEEC----------CCCCcccccccccCCcCCEEECCCCc----ccee-
Confidence 555555555555554432 22 444444444421 111 011 23444555555555421 1111
Q ss_pred hccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCC
Q 042981 649 RLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPP 728 (876)
Q Consensus 649 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 728 (876)
.+..+++|+.|++++|.+... .+..+++|+.|+++++....+| +..+++|+.|++++|.+.+. |
T Consensus 186 --~l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~-~- 249 (457)
T 3bz5_A 186 --DVSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-D- 249 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred --ccccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc-C-
Confidence 155667777888877766421 2455678888888888777777 77888899999999887653 3
Q ss_pred CCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCc--ccccCcccceeeccccccccccccccc--cccccC
Q 042981 729 LGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSS--SVIAFPKLKSLHIGAMEELEEWNYRIT--RKENIS 803 (876)
Q Consensus 729 l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~L~~~~~~~~--~~~~~~ 803 (876)
++.++ |+.|.++.+.. ..++++.+.... ....+++|+.|++++|..+........ ..-.+.
T Consensus 250 ~~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp CTTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred HHHCCCCCEEeccCCCC--------------CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 46677 77777665431 112222111111 134678999999998876554432110 011355
Q ss_pred cccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCC
Q 042981 804 IMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPI 842 (876)
Q Consensus 804 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 842 (876)
.+++|+.|++++| .++.+| +.++++|+.|++++|+.
T Consensus 316 ~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 316 QNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred hcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 7789999999998 455565 78899999999999864
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6e-24 Score=235.24 Aligned_cols=304 Identities=15% Similarity=0.085 Sum_probs=239.7
Q ss_pred CCceEEEEeeecCCCCCccc-ccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMS-IHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
..+++++++..+.+..+|.. +..+++|++|++.++. ...+++..|..+++|++|+| ++|.+..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L---------~~n~l~~~ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYM---------GFNAIRYL 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEEC---------CCCCCCcC
Confidence 46789999999988887655 6789999999998775 34455556899999999999 77777777
Q ss_pred c-cccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCC
Q 042981 521 P-ENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKL 598 (876)
Q Consensus 521 p-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 598 (876)
| ..++++++|++|+|++|.++.+|.. ++++++|++|++++|......|..+.++++|++|++++|.+.. ++ ++.+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGC
T ss_pred CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccc
Confidence 5 5579999999999999999999987 5899999999999996555556679999999999999997644 33 5667
Q ss_pred CCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 599 TSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 599 ~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
++|+.| +++.+.+..+.....|+.|++++.. +... + ....++|+.|++++|.+.+.
T Consensus 186 ~~L~~L----------~l~~n~l~~~~~~~~L~~L~l~~n~----l~~~-~--~~~~~~L~~L~l~~n~l~~~------- 241 (390)
T 3o6n_A 186 PSLFHA----------NVSYNLLSTLAIPIAVEELDASHNS----INVV-R--GPVNVELTILKLQHNNLTDT------- 241 (390)
T ss_dssp TTCSEE----------ECCSSCCSEEECCSSCSEEECCSSC----CCEE-E--CCCCSSCCEEECCSSCCCCC-------
T ss_pred ccccee----------ecccccccccCCCCcceEEECCCCe----eeec-c--ccccccccEEECCCCCCccc-------
Confidence 888888 5567778888888889999998742 2211 1 12347899999999987532
Q ss_pred HHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCC
Q 042981 679 LLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIE 756 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~ 756 (876)
..+..+++|+.|+++++....+ |..+..+++|++|+|++|.+.+..+..+.+| |+.|++++|... .++
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~------- 311 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVE------- 311 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCG-------
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecC-------
Confidence 3455678999999999987765 7788899999999999999876544567789 999999998643 221
Q ss_pred CCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccC
Q 042981 757 GSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRL 819 (876)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 819 (876)
..+..+++|+.|+++++. +... .+..+++|+.|++++|+..
T Consensus 312 -------------~~~~~l~~L~~L~L~~N~-i~~~--------~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 312 -------------RNQPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -------------GGHHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEECCSSCEE
T ss_pred -------------ccccccCcCCEEECCCCc-ccee--------CchhhccCCEEEcCCCCcc
Confidence 224468999999998873 4443 2558899999999999653
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=236.71 Aligned_cols=295 Identities=18% Similarity=0.193 Sum_probs=210.2
Q ss_pred CCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccc-cc
Q 042981 495 LACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPA-GI 571 (876)
Q Consensus 495 l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i 571 (876)
.+.+++|+| ++|.+..++ ..|.++++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|. .|
T Consensus 31 ~~~l~~L~L---------~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDL---------GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEEC---------CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSS
T ss_pred CCCCcEEEC---------CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccc
Confidence 358999999 777777764 6789999999999999999977 678999999999999999 4666665 47
Q ss_pred cCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhcc
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLG 651 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~ 651 (876)
.++++|++|++++|.+....|..+.++++|++|..... .+.......+..+++|+.|+++++ .+.......
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~ 171 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-----DLVYISHRAFSGLNSLEQLTLEKC----NLTSIPTEA 171 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-----TCCEECTTSSTTCTTCCEEEEESC----CCSSCCHHH
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-----ccceeChhhccCCCCCCEEECCCC----cCcccChhH
Confidence 89999999999999887777888899999998833211 111112234667788888888874 222333344
Q ss_pred CcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecC-CCCCCchhhcccCCcEEEEecCCCCCCCC--C
Q 042981 652 LHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYG-GNIFPKWLTSLTNLRDLRLKSCVICEHFP--P 728 (876)
Q Consensus 652 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~L~~~~~~~~lp--~ 728 (876)
+.++++|+.|++++|.+.... ...+..+++|+.|++.++. ...+|.......+|++|+|++|.+.+ +| .
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 243 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIR-------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLA 243 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEEC-------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHH
T ss_pred hcccCCCcEEeCCCCcCcEeC-------hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHH
Confidence 677888888888888764221 1245566788888888764 33446656566688888888887753 44 3
Q ss_pred CCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccc
Q 042981 729 LGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPR 807 (876)
Q Consensus 729 l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 807 (876)
++.++ |+.|+|++|........ .+..+++|+.|+++++ .+... .+..+..+++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~--------------------~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~ 297 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGS--------------------MLHELLRLQEIQLVGG-QLAVV-----EPYAFRGLNY 297 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTT--------------------SCTTCTTCCEEECCSS-CCSEE-----CTTTBTTCTT
T ss_pred hcCccccCeeECCCCcCCccChh--------------------hccccccCCEEECCCC-ccceE-----CHHHhcCccc
Confidence 67778 88888888764433222 1335788888877766 33332 2456677888
Q ss_pred cceeeeccCccCCCCCC-CCCCCCCccEEEEecCCCc
Q 042981 808 LSSLTIWYCPRLRVLPD-YLFQSTTLQKLSISYCPIM 843 (876)
Q Consensus 808 L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l 843 (876)
|+.|+|++| .++.+|. .+..+++|+.|++++|+..
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 888888888 4454553 4677888888888888754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-23 Score=244.82 Aligned_cols=304 Identities=15% Similarity=0.080 Sum_probs=239.8
Q ss_pred CCceEEEEeeecCCCCCccc-ccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMS-IHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
...++.+++..+.+..+|.. +..+++|++|++.+|. ...+++..|..+++|++|+| ++|.+..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~l~~~ 114 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYM---------GFNAIRYL 114 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEEC---------CCCcCCCC
Confidence 35678899999888877554 6789999999998775 34455556899999999999 77777777
Q ss_pred cc-ccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCC
Q 042981 521 PE-NVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKL 598 (876)
Q Consensus 521 p~-~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 598 (876)
|. .++++++|++|+|++|.++.+|.. ++++++|++|+|++|......|..|..+++|++|++++|.+.+ ++ ++.+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l 191 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI 191 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGC
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhh
Confidence 64 469999999999999999999987 5899999999999996666667789999999999999997744 33 5567
Q ss_pred CCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 599 TSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 599 ~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
++|+.| +++.+.+..+.....|+.|+++++.. ..+.. . ..++|+.|++++|.+.+.
T Consensus 192 ~~L~~L----------~l~~n~l~~l~~~~~L~~L~ls~n~l-~~~~~----~--~~~~L~~L~L~~n~l~~~------- 247 (597)
T 3oja_B 192 PSLFHA----------NVSYNLLSTLAIPIAVEELDASHNSI-NVVRG----P--VNVELTILKLQHNNLTDT------- 247 (597)
T ss_dssp TTCSEE----------ECCSSCCSEEECCTTCSEEECCSSCC-CEEEC----S--CCSCCCEEECCSSCCCCC-------
T ss_pred hhhhhh----------hcccCccccccCCchhheeeccCCcc-ccccc----c--cCCCCCEEECCCCCCCCC-------
Confidence 888888 56677888888888999999987432 11111 1 236899999999987531
Q ss_pred HHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCC
Q 042981 679 LLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIE 756 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~ 756 (876)
..+..+++|+.|++++|....+ |..++.+++|+.|+|++|.+.+..+.++.+| |+.|+|++|.... +
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i-------- 316 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-V-------- 316 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-C--------
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-c--------
Confidence 3455678999999999987765 7789999999999999999877555567799 9999999986432 2
Q ss_pred CCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccC
Q 042981 757 GSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRL 819 (876)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 819 (876)
+..+..+++|+.|+++++. +... .+..+++|+.|+|++|+..
T Consensus 317 ------------~~~~~~l~~L~~L~L~~N~-l~~~--------~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 317 ------------ERNQPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ------------GGGHHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEECCSSCEE
T ss_pred ------------CcccccCCCCCEEECCCCC-CCCc--------ChhhcCCCCEEEeeCCCCC
Confidence 2234578999999998873 4433 2568899999999999753
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.5e-23 Score=232.41 Aligned_cols=350 Identities=18% Similarity=0.205 Sum_probs=171.9
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcc-------------eEEecCcccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACF-------------RALVIGQRNF 508 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~ 508 (876)
...++.+.++.+.+..+|.++.++++|++|++.++. +.+. .+..+..+++| +.|++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l----- 78 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERN-APPGNGEQREMAVSRLRDCLDRQAHELEL----- 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-----HHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEEC-----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----cccc-CCcccccchhcchhhhhhhhccCCCEEEe-----
Confidence 457899999999998889999999999999997764 1122 22224555544 78888
Q ss_pred ccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCC
Q 042981 509 IFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLL 588 (876)
Q Consensus 509 ~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 588 (876)
+++.+..+|.. .++|++|++++|.++.+|.. +.+|++|++++| .+..+|.. .++|++|++++|.+.
T Consensus 79 ----~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 ----NNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ----TTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCS
T ss_pred ----cCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCC
Confidence 66666666652 35777888888877777753 367777777776 34444431 156777777777654
Q ss_pred ccCCccCCCCCCCCccCceeecCccCCCcccccccccc-CCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEecc
Q 042981 589 KYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKN-LQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDE 667 (876)
Q Consensus 589 ~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~-L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 667 (876)
.+| .++++++|++| +++.+.+..++. ..+|+.|+++++. +.. .+ .+.++++|+.|++++|.
T Consensus 145 -~lp-~~~~l~~L~~L----------~l~~N~l~~lp~~~~~L~~L~L~~n~----l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 145 -KLP-ELQNSSFLKII----------DVDNNSLKKLPDLPPSLEFIAAGNNQ----LEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp -SCC-CCTTCTTCCEE----------ECCSSCCSCCCCCCTTCCEEECCSSC----CSS-CC-CCTTCTTCCEEECCSSC
T ss_pred -CCc-ccCCCCCCCEE----------ECCCCcCcccCCCcccccEEECcCCc----CCc-Cc-cccCCCCCCEEECCCCc
Confidence 366 46777777776 334444444332 2466666666532 111 11 35666777777777665
Q ss_pred CCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCce
Q 042981 668 EGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVK 746 (876)
Q Consensus 668 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~ 746 (876)
+.+.. ..+.+|+.|++.++....+|. ++.+++|++|++++|.+.+ +|. .++ |+.|++++|....
T Consensus 207 l~~l~-----------~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 207 LKKLP-----------DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCC-----------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC
T ss_pred CCcCC-----------CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc
Confidence 53110 012366666666666666663 5566666666666666543 222 123 5555555443221
Q ss_pred EeCccc-------------cc----CCCCCCCCCCCCCCCcccccC-cccceeeccccccccccccccccccccCccccc
Q 042981 747 RVGNEF-------------LG----IEGSSEDDPSSSSSSSSVIAF-PKLKSLHIGAMEELEEWNYRITRKENISIMPRL 808 (876)
Q Consensus 747 ~~~~~~-------------~~----~~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 808 (876)
++... .+ ...+..++++.+.+.. +..+ ++|+.|+++++ .+..+ + ..+++|
T Consensus 272 -l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N-~l~~l------p---~~~~~L 339 (454)
T 1jl5_A 272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSNN-KLIEL------P---ALPPRL 339 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCSS-CCSCC------C---CCCTTC
T ss_pred -cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCCC-ccccc------c---ccCCcC
Confidence 11100 00 0122223333332222 1122 36666666554 23321 1 136788
Q ss_pred ceeeeccCccCCCCCCCCCCCCCccEEEEecCCCch--hhccccccCCCCC-------------CCcCEEEEccCC
Q 042981 809 SSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIME--ELRILEDHRTTDI-------------PRLSSLEIEYCP 869 (876)
Q Consensus 809 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~l-------------p~L~~L~i~~c~ 869 (876)
+.|++++| .++.+|. .+++|+.|++++|+... .+|. .+..+ ++|+.|++++|+
T Consensus 340 ~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~----~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 340 ERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPE----SVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCT----TCCEEECCC---------------------
T ss_pred CEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChH----HHHhhhhcccccccccccCcCCEEECCCCc
Confidence 88888888 5567776 36888888888887654 2221 12222 678888888874
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.2e-22 Score=228.32 Aligned_cols=302 Identities=20% Similarity=0.148 Sum_probs=226.4
Q ss_pred hccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGI 571 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 571 (876)
+..+++|++|++ ++|.+..+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| +
T Consensus 38 ~~~l~~L~~L~L---------s~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDC---------HNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHHHTTCCEEEC---------CSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred hhHcCCCCEEEc---------cCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 567899999999 777777777 6899999999999999999987 8999999999999994 66665 8
Q ss_pred cCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccc--cccCCCCCCeeeeCcCCCCCcchhhh
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLES--LKNLQLLRECGIEGLSNVSHLDEDER 649 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~--L~~L~~L~~L~l~~~~~~~~~~~~~~ 649 (876)
+++++|++|++++|.+.+ +| ++.+++|++| +++.+.+.. +..+++|+.|+++++..+...
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L----------~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~----- 164 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL----------NCARNTLTEIDVSHNTQLTELDCHLNKKITKL----- 164 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE----------ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC-----
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE----------ECCCCccceeccccCCcCCEEECCCCCccccc-----
Confidence 999999999999997754 55 7888899888 333444433 567888999999886443332
Q ss_pred ccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCC
Q 042981 650 LGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPL 729 (876)
Q Consensus 650 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l 729 (876)
.+..+++|+.|++++|.+... .+..+++|+.|++.++....++ ++.+++|++|++++|++.+ +| +
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l----------~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~ 229 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL----------DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-V 229 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC----------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-C
T ss_pred -ccccCCcCCEEECCCCcccee----------ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-c
Confidence 377889999999999987531 1556789999999999888764 7789999999999999977 66 8
Q ss_pred Cccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccccccccccc-----ccccccccC
Q 042981 730 GKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNY-----RITRKENIS 803 (876)
Q Consensus 730 ~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~-----~~~~~~~~~ 803 (876)
+.++ |+.|++++|...... ...|++|+.|++++. +++...+ .+..+ .+
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~-----------------------~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELD-----------------------VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC-----------------------CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEE--CT
T ss_pred cccCCCCEEEeeCCcCCCcC-----------------------HHHCCCCCEEeccCC-CCCEEECCCCccCCccc--cc
Confidence 8999 999999998643221 123555555444332 2222221 11112 35
Q ss_pred cccccceeeeccCccCCCCCCC--------CCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCCCCCCC
Q 042981 804 IMPRLSSLTIWYCPRLRVLPDY--------LFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPKLNVLP 875 (876)
Q Consensus 804 ~l~~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~L~~lP 875 (876)
.+++|+.|++++|+.++.+|.. +.++++|+.|++++|..-. + .+..+++|+.|+++++ +++.+|
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l------~l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L------DVSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C------CCTTCTTCSEEECCSS-CCCBCT
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c------ccccCCcCcEEECCCC-CCCCcc
Confidence 7899999999999877776642 3455677777777775332 2 3678999999999887 455544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.6e-23 Score=220.83 Aligned_cols=232 Identities=23% Similarity=0.316 Sum_probs=176.4
Q ss_pred cCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccC
Q 042981 494 KLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 494 ~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
....++.|+| +++.+..+|..++++++|++|+|++|.++.+|..++++++|++|+|++| .+..+|..+.+
T Consensus 79 ~~~~l~~L~L---------~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALEL---------RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIAS 148 (328)
T ss_dssp TSTTCCEEEE---------ESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGG
T ss_pred cccceeEEEc---------cCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhc
Confidence 4678999999 7778889999999999999999999999999999999999999999999 45689999999
Q ss_pred cCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCc
Q 042981 574 LKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLH 653 (876)
Q Consensus 574 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 653 (876)
+++|++|++++|...+.+|..++... + ...+.
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~-----------------------------------~-------------~~~~~ 180 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTD-----------------------------------A-------------SGEHQ 180 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-------------------------------------------------CCCEE
T ss_pred CcCCCEEECCCCCCccccChhHhhcc-----------------------------------c-------------hhhhc
Confidence 99999999999877777776442200 0 00134
Q ss_pred ccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc
Q 042981 654 NMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP 733 (876)
Q Consensus 654 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp 733 (876)
++++|+.|++++|.+ ..+|.+++.+++|++|+|++|.+.+..+.++.++
T Consensus 181 ~l~~L~~L~L~~n~l-------------------------------~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGI-------------------------------RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp ESTTCCEEEEEEECC-------------------------------CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred cCCCCCEEECcCCCc-------------------------------CcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 455666666666543 3457777777777777777777765445566777
Q ss_pred -CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceee
Q 042981 734 -LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLT 812 (876)
Q Consensus 734 -L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 812 (876)
|+.|++++|.....++. .+..+++|+.|++++|..+..+ +..+..+++|+.|+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~--------------------~~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPP--------------------IFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLD 283 (328)
T ss_dssp TCCEEECTTCTTCCBCCC--------------------CTTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEE
T ss_pred CCCEEECcCCcchhhhHH--------------------HhcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEe
Confidence 77777777665443322 2345778888887776544433 44677889999999
Q ss_pred eccCccCCCCCCCCCCCCCccEEEEecC
Q 042981 813 IWYCPRLRVLPDYLFQSTTLQKLSISYC 840 (876)
Q Consensus 813 l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 840 (876)
|++|+.++.+|..+.++++|+.+++..+
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999888899999999999999988866
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4e-22 Score=223.72 Aligned_cols=278 Identities=19% Similarity=0.198 Sum_probs=118.7
Q ss_pred ccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCcee
Q 042981 529 HLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFA 608 (876)
Q Consensus 529 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 608 (876)
+|++|++++|.++.+| +++++++|++|++++| .+..+|..+ .+|++|++++|.+.+ +| .++++++|+.|
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L---- 200 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI---- 200 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE----
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE----
Confidence 4555555555555544 3455555555555554 233344322 245555555554322 33 34444444444
Q ss_pred ecCccCCCcccccccccc-CCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCC
Q 042981 609 MGGGVDDISTCRLESLKN-LQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPL 687 (876)
Q Consensus 609 ~~~~~~~ls~~~l~~L~~-L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~ 687 (876)
+++.+.+..++. ..+|+.|+++++.. .. .+ .+..+++|+.|++++|.+.... ..++
T Consensus 201 ------~l~~N~l~~l~~~~~~L~~L~l~~n~l-~~----lp-~~~~l~~L~~L~l~~N~l~~l~-----------~~~~ 257 (454)
T 1jl5_A 201 ------YADNNSLKKLPDLPLSLESIVAGNNIL-EE----LP-ELQNLPFLTTIYADNNLLKTLP-----------DLPP 257 (454)
T ss_dssp ------ECCSSCCSSCCCCCTTCCEEECCSSCC-SS----CC-CCTTCTTCCEEECCSSCCSSCC-----------SCCT
T ss_pred ------ECCCCcCCcCCCCcCcccEEECcCCcC-Cc----cc-ccCCCCCCCEEECCCCcCCccc-----------cccc
Confidence 222333332221 12444455544211 11 11 1445555555555555442110 0124
Q ss_pred CccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCC
Q 042981 688 NVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSS 766 (876)
Q Consensus 688 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~ 766 (876)
+|+.|++.++....+|.+ +++|++|++++|.+.+ +|.+ .+ |+.|++++|.... ++.. ...+..++++.+
T Consensus 258 ~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N 327 (454)
T 1jl5_A 258 SLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNN 327 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSS
T ss_pred ccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCC
Confidence 555555555555554443 2455555555555433 1111 13 5555555554322 1110 012333333333
Q ss_pred CCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCC--CCCCCCCCC-------------CC
Q 042981 767 SSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLR--VLPDYLFQS-------------TT 831 (876)
Q Consensus 767 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~ 831 (876)
.+......+++|+.|+++++ .+..+ +. .+++|+.|++++|+... .+|..+.++ ++
T Consensus 328 ~l~~lp~~~~~L~~L~L~~N-~l~~l------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~ 397 (454)
T 1jl5_A 328 KLIELPALPPRLERLIASFN-HLAEV------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397 (454)
T ss_dssp CCSCCCCCCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------
T ss_pred ccccccccCCcCCEEECCCC-ccccc------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCc
Confidence 33222224789999999887 45432 32 57999999999997666 688888777 88
Q ss_pred ccEEEEecCCCchhhccccccCCCCCC-CcCEEEEccCC
Q 042981 832 LQKLSISYCPIMEELRILEDHRTTDIP-RLSSLEIEYCP 869 (876)
Q Consensus 832 L~~L~l~~~~~l~~l~~~~~~~~~~lp-~L~~L~i~~c~ 869 (876)
|+.|++++|+..+ + +.+| +|+.|.+.+|.
T Consensus 398 L~~L~ls~N~l~~-~--------~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 398 LKQLHVETNPLRE-F--------PDIPESVEDLRMNSER 427 (454)
T ss_dssp ---------------------------------------
T ss_pred CCEEECCCCcCCc-c--------ccchhhHhheeCcCcc
Confidence 9999999997543 1 2333 67778887764
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.8e-22 Score=238.96 Aligned_cols=134 Identities=25% Similarity=0.237 Sum_probs=111.7
Q ss_pred CCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc-ccccCcccCe
Q 042981 454 GGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE-NVRKLIHLKY 532 (876)
Q Consensus 454 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~~L~~Lr~ 532 (876)
+++.+|..+. ++++.|++++|. +..+++..|.++++|++|+| ++|.+..+|+ .|.+|++|++
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~L---------s~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDL---------SRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEEC---------TTCCCCEECTTTTTTCTTCCE
T ss_pred CcCccCCCCC--cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEEC---------CCCcCCCcChhHhcCCCCCCE
Confidence 4566676553 589999998776 45566667999999999999 7888888875 5899999999
Q ss_pred eeccCccccccch-hhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCCc-cCCccCCCCCCCCccC
Q 042981 533 LNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLLK-YMPIGISKLTSLRTLE 605 (876)
Q Consensus 533 L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~ 605 (876)
|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|. .|+++++|++|++++|.+.. ..|..++.+++|++|.
T Consensus 105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp EECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred EEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 9999999999986 58999999999999994 555654 58999999999999997754 4677888999999984
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.1e-22 Score=219.24 Aligned_cols=286 Identities=19% Similarity=0.235 Sum_probs=178.8
Q ss_pred cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIER 542 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~ 542 (876)
..+++|++|.+.++.. ..+ +. +..+++|++|++ ++|.+..+|. +..+++|++|++++|.++.
T Consensus 41 ~~l~~L~~L~l~~~~i------~~~-~~-~~~~~~L~~L~l---------~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~ 102 (347)
T 4fmz_A 41 EELESITKLVVAGEKV------ASI-QG-IEYLTNLEYLNL---------NGNQITDISP-LSNLVKLTNLYIGTNKITD 102 (347)
T ss_dssp HHHTTCSEEECCSSCC------CCC-TT-GGGCTTCCEEEC---------CSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred hhcccccEEEEeCCcc------ccc-hh-hhhcCCccEEEc---------cCCccccchh-hhcCCcCCEEEccCCcccC
Confidence 4456666666655441 111 11 455666666666 4455555544 5566666666666666665
Q ss_pred cchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccccc
Q 042981 543 LPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLE 622 (876)
Q Consensus 543 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~ 622 (876)
+| .+.++++|++|++++| .+..+|. +..+++|++|++++|.....++ .+..+++|++|
T Consensus 103 ~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L------------------ 160 (347)
T 4fmz_A 103 IS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL------------------ 160 (347)
T ss_dssp CG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE------------------
T ss_pred ch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE------------------
Confidence 54 3566666666666665 3444444 5666666666666664333222 13333333333
Q ss_pred ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCC
Q 042981 623 SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIF 702 (876)
Q Consensus 623 ~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l 702 (876)
+++++.. .... .+..+++|+.|++++ +....+
T Consensus 161 -----------~l~~~~~-~~~~-----~~~~l~~L~~L~l~~-------------------------------n~l~~~ 192 (347)
T 4fmz_A 161 -----------TVTESKV-KDVT-----PIANLTDLYSLSLNY-------------------------------NQIEDI 192 (347)
T ss_dssp -----------ECCSSCC-CCCG-----GGGGCTTCSEEECTT-------------------------------SCCCCC
T ss_pred -----------EecCCCc-CCch-----hhccCCCCCEEEccC-------------------------------Cccccc
Confidence 3333111 0000 033445555555544 444454
Q ss_pred CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCccccee
Q 042981 703 PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSL 781 (876)
Q Consensus 703 p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L 781 (876)
+. +..+++|+.|++++|.+.+..+ ++.++ |+.|++++|...... .+..+++|+.|
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~----------------------~~~~l~~L~~L 248 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS----------------------PLANLSQLTWL 248 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG----------------------GGTTCTTCCEE
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc----------------------chhcCCCCCEE
Confidence 54 7789999999999998865433 78889 999999998643211 13478999999
Q ss_pred eccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcC
Q 042981 782 HIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLS 861 (876)
Q Consensus 782 ~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~ 861 (876)
+++++ .+... +.+..+++|+.|++++| .+..+| .+..+++|+.|++++|+.....+. .+..+|+|+
T Consensus 249 ~l~~n-~l~~~-------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~ 314 (347)
T 4fmz_A 249 EIGTN-QISDI-------NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLT 314 (347)
T ss_dssp ECCSS-CCCCC-------GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCS
T ss_pred ECCCC-ccCCC-------hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh----HhhccccCC
Confidence 99887 44443 34678999999999999 556665 478899999999999976543322 356789999
Q ss_pred EEEEccCCCCCCCC
Q 042981 862 SLEIEYCPKLNVLP 875 (876)
Q Consensus 862 ~L~i~~c~~L~~lP 875 (876)
.|++++|+ ++.+|
T Consensus 315 ~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 315 TLFLSQNH-ITDIR 327 (347)
T ss_dssp EEECCSSS-CCCCG
T ss_pred EEEccCCc-ccccc
Confidence 99999995 66654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.9e-21 Score=210.04 Aligned_cols=140 Identities=25% Similarity=0.299 Sum_probs=101.7
Q ss_pred ceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-cc
Q 042981 444 KVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PE 522 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~ 522 (876)
.++.+.++.+.+..+|..+ .++|++|++.++. ...+++..|..+++|++|++ ++|.+..+ |.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L---------~~n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND------ISELRKDDFKGLQHLYALVL---------VNNKISKIHEK 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCEECGG
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc------CCccCHhHhhCCCCCcEEEC---------CCCccCccCHh
Confidence 3567777777777777655 3688888887665 23444455788888888888 66666665 56
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCC--ccCCccCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLL--KYMPIGISKLT 599 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~--~~~p~~i~~l~ 599 (876)
.++++++|++|+|++|.++.+|..+. ++|++|++++|. +..+| ..+.++++|++|++++|.+. +..|..++.+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 78888888888888888888887765 788888888884 44454 45788888888888888663 2455556666
Q ss_pred CCCcc
Q 042981 600 SLRTL 604 (876)
Q Consensus 600 ~L~~L 604 (876)
+|+.|
T Consensus 173 ~L~~L 177 (332)
T 2ft3_A 173 KLNYL 177 (332)
T ss_dssp CCSCC
T ss_pred ccCEE
Confidence 66666
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.9e-21 Score=209.88 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=81.7
Q ss_pred eEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccc
Q 042981 445 VRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PEN 523 (876)
Q Consensus 445 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~ 523 (876)
++.++++.+.+..+|..+. ++|+.|++.++. ...++...|..+++|++|+| ++|.+..+ |..
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L---------~~n~l~~~~~~~ 95 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK------ITEIKDGDFKNLKNLHTLIL---------INNKISKISPGA 95 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSC------CCCBCTTTTTTCTTCCEEEC---------CSSCCCCBCTTT
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCc------CCEeChhhhccCCCCCEEEC---------CCCcCCeeCHHH
Confidence 4455555555555554442 566677765554 22333334666677777777 55555554 556
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCc--cCCccCCCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLK--YMPIGISKLTSL 601 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L 601 (876)
++++++|++|+|++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.+.. ..|..++++++|
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 6667777777777777776666554 567777777664333334446667777777777665532 334444445555
Q ss_pred Ccc
Q 042981 602 RTL 604 (876)
Q Consensus 602 ~~L 604 (876)
+.|
T Consensus 174 ~~L 176 (330)
T 1xku_A 174 SYI 176 (330)
T ss_dssp CEE
T ss_pred CEE
Confidence 554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.6e-22 Score=215.96 Aligned_cols=246 Identities=21% Similarity=0.234 Sum_probs=186.4
Q ss_pred CceEEEEeeecCCCC---CcccccCCCcceEEeeec-CCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc
Q 042981 443 DKVRHLGLNFEGGAS---FPMSIHGLNRLRTLLIYF-QSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR 518 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~---~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~ 518 (876)
.++++|+++.+.+.. +|..+.++++|++|++.+ +. +... .+..+.++++|++|+| ++|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~-~p~~l~~l~~L~~L~L---------s~n~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGP-IPPAIAKLTQLHYLYI---------THTNVS 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESC-CCGGGGGCTTCSEEEE---------EEECCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----cccc-CChhHhcCCCCCEEEC---------cCCeeC
Confidence 578999999988874 688888899999999974 43 2223 3334788889999999 555555
Q ss_pred -ccccccccCcccCeeeccCcccc-ccchhhccCCcccEEeecCCCCCccccccccCcC-CCceEecCCCCCCccCCccC
Q 042981 519 -EIPENVRKLIHLKYLNLSELCIE-RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLK-KMRSLLNGGTPLLKYMPIGI 595 (876)
Q Consensus 519 -~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i 595 (876)
.+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.....+|..+..++ +|++|++++|.+.+.+|..+
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 67888888899999999999888 7888888899999999988865558888888887 88999998887777777777
Q ss_pred CCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccch
Q 042981 596 SKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRK 675 (876)
Q Consensus 596 ~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 675 (876)
+.++ |+.| +++.+.+. ...+..+..+++|+.|++++|.+...
T Consensus 195 ~~l~-L~~L----------~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~---- 236 (313)
T 1ogq_A 195 ANLN-LAFV----------DLSRNMLE-----------------------GDASVLFGSDKNTQKIHLAKNSLAFD---- 236 (313)
T ss_dssp GGCC-CSEE----------ECCSSEEE-----------------------ECCGGGCCTTSCCSEEECCSSEECCB----
T ss_pred hCCc-ccEE----------ECcCCccc-----------------------CcCCHHHhcCCCCCEEECCCCceeee----
Confidence 6665 6655 22233221 12233456667777777777765321
Q ss_pred HHHHHhhCCCCCCccEEEEeecCCC-CCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCc
Q 042981 676 NQQLLEALQPPLNVKELGIVSYGGN-IFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGV 745 (876)
Q Consensus 676 ~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l 745 (876)
...+..+++|+.|++++|... .+|.++..+++|++|+|++|.+.+.+|..+.++ |+.|++.+|+.+
T Consensus 237 ----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 ----LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ----cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 122455678888888887766 679999999999999999999998999999999 999999998744
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8.8e-21 Score=204.63 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=83.5
Q ss_pred cEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCC-CCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCC
Q 042981 690 KELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHF-PPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSS 767 (876)
Q Consensus 690 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 767 (876)
+.|++.++....+|..+. ++|++|++++|.+.+.. ..++.++ |+.|++++|........
T Consensus 174 ~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------- 234 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG----------------- 234 (330)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh-----------------
Confidence 333333333344444432 56777777777665432 2356666 77777766653332221
Q ss_pred CCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCC-CC------CCCCccEEEEecC
Q 042981 768 SSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDY-LF------QSTTLQKLSISYC 840 (876)
Q Consensus 768 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~~~ 840 (876)
.+..+++|+.|+++++ .+..+ +..+..+++|++|++++|+ ++.+|.. +. ..++|+.|++++|
T Consensus 235 ---~~~~l~~L~~L~L~~N-~l~~l------p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 235 ---SLANTPHLRELHLNNN-KLVKV------PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp ---TGGGSTTCCEEECCSS-CCSSC------CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ---hccCCCCCCEEECCCC-cCccC------ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecC
Confidence 1335777888877776 34422 4456678888888888884 4545432 22 2467888888888
Q ss_pred CCchhhccccccCCCCCCCcCEEEEccC
Q 042981 841 PIMEELRILEDHRTTDIPRLSSLEIEYC 868 (876)
Q Consensus 841 ~~l~~l~~~~~~~~~~lp~L~~L~i~~c 868 (876)
+.... .+....+..+++|+.|+++++
T Consensus 304 ~~~~~--~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 PVQYW--EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCGG--GSCGGGGTTCCCGGGEEC---
T ss_pred ccccc--ccCccccccccceeEEEeccc
Confidence 75421 111124667788888888776
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.3e-21 Score=209.29 Aligned_cols=288 Identities=15% Similarity=0.113 Sum_probs=190.4
Q ss_pred cceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcC
Q 042981 497 CFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLK 575 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 575 (876)
+|+++++ +++.+..+|..+. ++|++|+|++|.++.+| ..+.++++|++|++++|......|..+.+++
T Consensus 34 ~l~~l~~---------~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQC---------SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEEC---------CSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEEC---------CCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 6888998 7777888887764 68999999999998775 4789999999999999865555588899999
Q ss_pred CCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCccc
Q 042981 576 KMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNM 655 (876)
Q Consensus 576 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l 655 (876)
+|++|++++|.+ ..+|..+. ++|++| +++.+.+..+ ....+.++
T Consensus 103 ~L~~L~L~~n~l-~~l~~~~~--~~L~~L----------~l~~n~i~~~-----------------------~~~~~~~l 146 (332)
T 2ft3_A 103 KLQKLYISKNHL-VEIPPNLP--SSLVEL----------RIHDNRIRKV-----------------------PKGVFSGL 146 (332)
T ss_dssp TCCEEECCSSCC-CSCCSSCC--TTCCEE----------ECCSSCCCCC-----------------------CSGGGSSC
T ss_pred CCCEEECCCCcC-CccCcccc--ccCCEE----------ECCCCccCcc-----------------------CHhHhCCC
Confidence 999999999866 46676554 566666 2223322211 11123445
Q ss_pred ccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCC-CCCCccc-
Q 042981 656 KNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHF-PPLGKLP- 733 (876)
Q Consensus 656 ~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~l~~Lp- 733 (876)
++|+.|++++|.+.... .....+... +|+.|++.++....+|..+. ++|++|+|++|.+.+.. ..++.++
T Consensus 147 ~~L~~L~l~~n~l~~~~-----~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSG-----FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp SSCCEEECCSCCCBGGG-----SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred ccCCEEECCCCccccCC-----CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 55555555555442100 001122222 56666666666666676554 78888999988887644 3577888
Q ss_pred CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeee
Q 042981 734 LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTI 813 (876)
Q Consensus 734 L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 813 (876)
|+.|++++|....... ..+..+++|+.|+++++ .+..+ +..+..+++|+.|++
T Consensus 219 L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N-~l~~l------p~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIEN--------------------GSLSFLPTLRELHLDNN-KLSRV------PAGLPDLKLLQVVYL 271 (332)
T ss_dssp CSCCBCCSSCCCCCCT--------------------TGGGGCTTCCEEECCSS-CCCBC------CTTGGGCTTCCEEEC
T ss_pred CCEEECCCCcCCcCCh--------------------hHhhCCCCCCEEECCCC-cCeec------ChhhhcCccCCEEEC
Confidence 8888888875433221 12446889999988887 45533 445778999999999
Q ss_pred ccCccCCCCCC-CCCC------CCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCC
Q 042981 814 WYCPRLRVLPD-YLFQ------STTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 814 ~~c~~l~~lp~-~l~~------l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
++|+ ++.+|. .+.. .++|+.|++++|+.... .+....+..+++|+.|++++|.
T Consensus 272 ~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC----
T ss_pred CCCC-CCccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhccccc
Confidence 9995 555543 3332 46789999999986421 1112356788999999999885
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.5e-21 Score=208.43 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=134.9
Q ss_pred CcceEEeeecCCCCCCCCch--hhhHHHhccCCcceEEecCccccccCCCCCccc-ccccccccCcccCeeeccCcccc-
Q 042981 466 NRLRTLLIYFQSPSNPSLNS--SILSELFSKLACFRALVIGQRNFIFDPYPNLIR-EIPENVRKLIHLKYLNLSELCIE- 541 (876)
Q Consensus 466 ~~Lr~L~l~~~~~~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~- 541 (876)
.+++.|++.++. +.+ .+ +..+.++++|++|++++ .|.+. .+|..++++++|++|+|++|.++
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~-~~~l~~l~~L~~L~L~~--------~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPI-PSSLANLPYLNFLYIGG--------INNLVGPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEEC-CGGGGGCTTCSEEEEEE--------ETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred ceEEEEECCCCC-----ccCCccc-ChhHhCCCCCCeeeCCC--------CCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence 578888887765 222 22 33477888888888831 13333 57888888888888888888887
Q ss_pred ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCC-CCCccCceeecCccCCCcccc
Q 042981 542 RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLT-SLRTLEKFAMGGGVDDISTCR 620 (876)
Q Consensus 542 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~ls~~~ 620 (876)
.+|..++++++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..++.++ +|+.| +++.+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L----------~L~~N~ 185 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM----------TISRNR 185 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE----------ECCSSE
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE----------ECcCCe
Confidence 7888888888888888888865557888888888888888888877667777776666 66666 222222
Q ss_pred ccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCC
Q 042981 621 LESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGN 700 (876)
Q Consensus 621 l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 700 (876)
+. ...+..+..++ |+.|++++|.+. .
T Consensus 186 l~-----------------------~~~~~~~~~l~-L~~L~Ls~N~l~------------------------------~ 211 (313)
T 1ogq_A 186 LT-----------------------GKIPPTFANLN-LAFVDLSRNMLE------------------------------G 211 (313)
T ss_dssp EE-----------------------EECCGGGGGCC-CSEEECCSSEEE------------------------------E
T ss_pred ee-----------------------ccCChHHhCCc-ccEEECcCCccc------------------------------C
Confidence 21 11122233443 666666665431 1
Q ss_pred CCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCC
Q 042981 701 IFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLY 743 (876)
Q Consensus 701 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~ 743 (876)
..|..+..+++|+.|+|++|.+.+.+|.++.++ |+.|++++|.
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 235666677888888888887766666566566 6666666554
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=3e-23 Score=235.40 Aligned_cols=383 Identities=17% Similarity=0.090 Sum_probs=253.4
Q ss_pred CCceEEEEeeecCCCCC--cccccCCCcceEEeeecCCCCCCCCchh---hhHHHhccCCcceEEecCccccccCCCCCc
Q 042981 442 GDKVRHLGLNFEGGASF--PMSIHGLNRLRTLLIYFQSPSNPSLNSS---ILSELFSKLACFRALVIGQRNFIFDPYPNL 516 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~ 516 (876)
++++++|+++.+.+... ...+..+++|++|++.+|. +... .+...+..+++|++|+| ++|.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~l~~~~~L~~L~L---------s~n~ 67 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNL---------RSNE 67 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEEC---------TTCC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-----CCHHHHHHHHHHHHhCCCcCEEeC---------CCCc
Confidence 56789999999887654 2336788999999998776 2221 34556788999999999 5555
Q ss_pred ccc-ccccc-ccCc----ccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCCcccccccc-----CcCCCceE
Q 042981 517 IRE-IPENV-RKLI----HLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDLRELPAGIG-----KLKKMRSL 580 (876)
Q Consensus 517 i~~-lp~~i-~~L~----~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~L~~L~~L 580 (876)
+.. .+..+ ..+. +|++|+|++|.++ .+|..+.++++|++|++++|......+..+. ..++|++|
T Consensus 68 l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 68 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence 543 22233 3344 6999999999988 5688899999999999999964333333332 35689999
Q ss_pred ecCCCCCCcc----CCccCCCCCCCCccCceeecCccCCCccccccc-----cc-----cCCCCCCeeeeCcCCCCCcch
Q 042981 581 LNGGTPLLKY----MPIGISKLTSLRTLEKFAMGGGVDDISTCRLES-----LK-----NLQLLRECGIEGLSNVSHLDE 646 (876)
Q Consensus 581 ~l~~~~~~~~----~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~-----L~-----~L~~L~~L~l~~~~~~~~~~~ 646 (876)
++++|.+... ++..+..+++|++| +++.+.+.. +. .+++|+.|+++++.-......
T Consensus 148 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L----------~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 148 QLEYCSLSAASCEPLASVLRAKPDFKEL----------TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCTTCCEE----------ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred ECCCCCCCHHHHHHHHHHHhhCCCCCEE----------ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 9999977553 35556677888888 444444432 22 256899999988533222222
Q ss_pred hhhccCcccccCCceEEEeccCCccccchHHHHHh-hCCCCCCccEEEEeecCCCC-----CCchhhcccCCcEEEEecC
Q 042981 647 DERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLE-ALQPPLNVKELGIVSYGGNI-----FPKWLTSLTNLRDLRLKSC 720 (876)
Q Consensus 647 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~ 720 (876)
..+..+..+++|+.|++++|.+... ....+.. .....++|+.|+++++.... +|..+..+++|++|+|++|
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~---~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDV---GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHH---HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHhCCCccEEeccCCcCChH---HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 3455677889999999999976311 1111222 23357899999999998765 5777778999999999999
Q ss_pred CCCCCCC-CC-----Cccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccc
Q 042981 721 VICEHFP-PL-----GKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWN 793 (876)
Q Consensus 721 ~~~~~lp-~l-----~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 793 (876)
.+.+..+ .+ ...+ |+.|++++|.........+ +..+..+++|++|+++++ .+.+..
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l----------------~~~l~~~~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF----------------SSVLAQNRFLLELQISNN-RLEDAG 357 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----------------HHHHHHCSSCCEEECCSS-BCHHHH
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH----------------HHHHhhCCCccEEEccCC-cccccc
Confidence 8743211 11 1236 9999999986321110001 112345799999999887 454432
Q ss_pred cccccccccC-cccccceeeeccCccCC----CCCCCCCCCCCccEEEEecCCCchh-hccccccCCCCCCCcCEEEEcc
Q 042981 794 YRITRKENIS-IMPRLSSLTIWYCPRLR----VLPDYLFQSTTLQKLSISYCPIMEE-LRILEDHRTTDIPRLSSLEIEY 867 (876)
Q Consensus 794 ~~~~~~~~~~-~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~lp~L~~L~i~~ 867 (876)
.... ...+. ..++|++|++++|.... .+|..+..+++|++|++++|+.-.. +..+........++|+.|.+.+
T Consensus 358 ~~~l-~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 358 VREL-CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHH-HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHH-HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 1000 01111 26899999999995443 6787788899999999999975432 1111111123345788888877
Q ss_pred CC
Q 042981 868 CP 869 (876)
Q Consensus 868 c~ 869 (876)
+.
T Consensus 437 ~~ 438 (461)
T 1z7x_W 437 IY 438 (461)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-20 Score=201.48 Aligned_cols=220 Identities=25% Similarity=0.336 Sum_probs=135.7
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
...++.|+++.+.+..+|..+..+++|++|++.+|.. ..++ ..+..+++|++|+| ++|.+..+|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l------~~lp-~~~~~l~~L~~L~L---------s~n~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL------MELP-DTMQQFAGLETLTL---------ARNPLRALP 143 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC------CCCC-SCGGGGTTCSEEEE---------ESCCCCCCC
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc------cchh-HHHhccCCCCEEEC---------CCCccccCc
Confidence 4567788888887777777676677777777765541 1222 23556666666666 555555666
Q ss_pred cccccCcccCeeeccCcc-ccccchhhcc---------CCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 522 ENVRKLIHLKYLNLSELC-IERLPKTLCE---------LYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~-i~~lp~~i~~---------L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
..++++++|++|+|++|. +..+|..++. +++|++|++++| .+..+|..+.++++|++|++++|.+. .+
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~-~l 221 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLS-AL 221 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCC-CC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCC-cC
Confidence 666666666777666654 3456655543 666666666666 34466666666666666666666543 34
Q ss_pred CccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcc
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEE 671 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 671 (876)
|..++.+++|++| +++++. .....+..+.++++|+.|++++|..
T Consensus 222 ~~~l~~l~~L~~L-----------------------------~Ls~n~----~~~~~p~~~~~l~~L~~L~L~~n~~--- 265 (328)
T 4fcg_A 222 GPAIHHLPKLEEL-----------------------------DLRGCT----ALRNYPPIFGGRAPLKRLILKDCSN--- 265 (328)
T ss_dssp CGGGGGCTTCCEE-----------------------------ECTTCT----TCCBCCCCTTCCCCCCEEECTTCTT---
T ss_pred chhhccCCCCCEE-----------------------------ECcCCc----chhhhHHHhcCCCCCCEEECCCCCc---
Confidence 4444444444444 333311 1112223355556666666655432
Q ss_pred ccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCC-CCccc-CceEeecCC
Q 042981 672 GRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPP-LGKLP-LEKLTLYGL 742 (876)
Q Consensus 672 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~L~L~~~ 742 (876)
...+|.++..+++|++|+|++|.+.+.+|. ++.++ |+.+.+..+
T Consensus 266 ---------------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 266 ---------------------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ---------------------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ---------------------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 245577888888999999999888887765 77788 888877653
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=202.31 Aligned_cols=260 Identities=17% Similarity=0.183 Sum_probs=146.1
Q ss_pred CcceEEecCccccccCCCCCccccccc-ccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCcccccc-cc
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPE-NVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAG-IG 572 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~ 572 (876)
++|++|++ ++|.+..+|. .+.++++|++|+|++|.++.++ ..++++++|++|++++| .+..+|.. +.
T Consensus 52 ~~L~~L~l---------~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDL---------SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEEC---------TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHT
T ss_pred ccCcEEEC---------CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhC
Confidence 46777777 5555566554 5667777777777777776554 35667777777777776 34445544 66
Q ss_pred CcCCCceEecCCCCCCccCCc--cCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhc
Q 042981 573 KLKKMRSLLNGGTPLLKYMPI--GISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERL 650 (876)
Q Consensus 573 ~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (876)
++++|++|++++|.+. .+|. .++++++|++| +++++.. .....+.
T Consensus 122 ~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L-----------------------------~l~~n~~---~~~~~~~ 168 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL-----------------------------RVGNMDT---FTKIQRK 168 (353)
T ss_dssp TCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE-----------------------------EEEESSS---CCEECTT
T ss_pred CCccCCEEECCCCCCc-ccCchhhhccCCCCcEE-----------------------------ECCCCcc---ccccCHH
Confidence 6777777777776543 3443 34444444444 3333211 1111123
Q ss_pred cCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhh-cccCCcEEEEecCCCCCCCCCC
Q 042981 651 GLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLT-SLTNLRDLRLKSCVICEHFPPL 729 (876)
Q Consensus 651 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~l 729 (876)
.+.++++|+.|++++|.+... ....+...++|+.|++.++....+|..+. .+++|+.|+|++|.+.+..+
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-- 239 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSY-------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF-- 239 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEE-------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC--
T ss_pred HccCCCCCCEEECCCCCcCcc-------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc--
Confidence 355666777777777655311 11223334455555555554444444332 35566666666655432110
Q ss_pred CcccCceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccc
Q 042981 730 GKLPLEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLS 809 (876)
Q Consensus 730 ~~LpL~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 809 (876)
..+. .....+.++.+++.++ .+....+. ..+..+..+++|+
T Consensus 240 --------------------~~l~-----------------~~~~~~~l~~l~L~~~-~l~~~~l~-~l~~~l~~l~~L~ 280 (353)
T 2z80_A 240 --------------------SELS-----------------TGETNSLIKKFTFRNV-KITDESLF-QVMKLLNQISGLL 280 (353)
T ss_dssp --------------------C-----------------------CCCCCCEEEEESC-BCCHHHHH-HHHHHHHTCTTCC
T ss_pred --------------------cccc-----------------cccccchhhccccccc-cccCcchh-hhHHHHhcccCCC
Confidence 0000 0112445555655554 23332221 1134566899999
Q ss_pred eeeeccCccCCCCCCCC-CCCCCccEEEEecCCCchhhc
Q 042981 810 SLTIWYCPRLRVLPDYL-FQSTTLQKLSISYCPIMEELR 847 (876)
Q Consensus 810 ~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~~l~~l~ 847 (876)
.|++++| .++.+|..+ ..+++|++|++++|+.....+
T Consensus 281 ~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 281 ELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999 566888874 789999999999998765543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=4e-21 Score=225.36 Aligned_cols=383 Identities=15% Similarity=0.082 Sum_probs=235.1
Q ss_pred CCceEEEEeeecCCCCC-cccccC-CCc-ceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIHG-LNR-LRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR 518 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~ 518 (876)
.+.+++|+++.+.+... +..+.. +++ |++|++.++. .+.......+...+++|++|+|++|.+. +....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~----~~~~~ 182 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFS----EKDGK 182 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEE----CCCSH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECcccccc----Ccchh
Confidence 45688889988765432 333333 334 9999997664 1233334555678999999999544431 10111
Q ss_pred ccccccccCcccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCC---cc
Q 042981 519 EIPENVRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLL---KY 590 (876)
Q Consensus 519 ~lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~---~~ 590 (876)
.++..+..+++|++|+|++|.++ .++..+.++++|++|++++| ....+|..+.++++|++|+++++... ..
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 13334467889999999999886 55666778999999999998 56668888899999999999754322 22
Q ss_pred CCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCc
Q 042981 591 MPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGE 670 (876)
Q Consensus 591 ~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 670 (876)
.+..++.+++|+.|....+.. ......+..+++|+.|+++++. +. .......+..+++|+.|+++ +...
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~------~~l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~-~~~~- 330 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGP------NEMPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR-NVIG- 330 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCT------TTGGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE-GGGH-
T ss_pred HHHHhhccccccccCccccch------hHHHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEecc-CccC-
Confidence 334566667777663222110 1122234567889999998854 21 12222346788999999998 3321
Q ss_pred cccchHHHHHhhCCCCCCccEEEEee----------cCCCC---CCchhhcccCCcEEEEecCCCCCC-CCCCCc-cc-C
Q 042981 671 EGRRKNQQLLEALQPPLNVKELGIVS----------YGGNI---FPKWLTSLTNLRDLRLKSCVICEH-FPPLGK-LP-L 734 (876)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~---lp~~l~~l~~L~~L~L~~~~~~~~-lp~l~~-Lp-L 734 (876)
..........+++|++|++.+ +.... ++.....+++|++|+++.+.+.+. +..++. +| |
T Consensus 331 -----~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 405 (592)
T 3ogk_B 331 -----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405 (592)
T ss_dssp -----HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC
T ss_pred -----HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC
Confidence 122222223457899999984 22111 122234689999999987777542 233444 77 9
Q ss_pred ceEeecCCC---CceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccccc-ccccccccccccccCcccccce
Q 042981 735 EKLTLYGLY---GVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEE-LEEWNYRITRKENISIMPRLSS 810 (876)
Q Consensus 735 ~~L~L~~~~---~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~l~~L~~ 810 (876)
+.|++..+. .+...+.. ..++..+..+++|+.|+++.|.+ +.+..+ ......+++|+.
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~--------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~ 467 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLD--------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRW 467 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCH--------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCE
T ss_pred cEEEEeecCCCccccCchHH--------------HHHHHHHHhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceE
Confidence 999997543 22111000 00011134588999999876543 232222 111234788999
Q ss_pred eeeccCccCC-CCCCCCCCCCCccEEEEecCCCchh-hccccccCCCCCCCcCEEEEccCCCCC
Q 042981 811 LTIWYCPRLR-VLPDYLFQSTTLQKLSISYCPIMEE-LRILEDHRTTDIPRLSSLEIEYCPKLN 872 (876)
Q Consensus 811 L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~lp~L~~L~i~~c~~L~ 872 (876)
|+|++|.... .++..+..+++|++|+|++|+.... ++. ....+|+|+.|++++|+ ++
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA----AVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH----HHHHCSSCCEEEEESCB-CC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH----HHHhcCccCeeECcCCc-CC
Confidence 9999885433 3455556788999999999983211 211 23467899999999986 54
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=2.7e-22 Score=227.51 Aligned_cols=353 Identities=18% Similarity=0.111 Sum_probs=225.9
Q ss_pred CCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-----ccccccccCcccCeeeccCcc
Q 042981 465 LNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR-----EIPENVRKLIHLKYLNLSELC 539 (876)
Q Consensus 465 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-----~lp~~i~~L~~Lr~L~Ls~~~ 539 (876)
.++|++|++.++. +.......++..+++|++|+| ++|.+. .++..+..+++|++|+|++|.
T Consensus 2 ~~~l~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L---------~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRL---------DDCGLTEARCKDISSALRVNPALAELNLRSNE 67 (461)
T ss_dssp CEEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEE---------ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred Cccceehhhhhcc-----cCchhHHHHHhhcCCccEEEc---------cCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc
Confidence 3678999997665 334445566889999999999 555444 567788889999999999999
Q ss_pred ccc-cchhh-ccCC----cccEEeecCCCCCc----cccccccCcCCCceEecCCCCCCccCCccC-----CCCCCCCcc
Q 042981 540 IER-LPKTL-CELY----NLQKLDIRWCEDLR----ELPAGIGKLKKMRSLLNGGTPLLKYMPIGI-----SKLTSLRTL 604 (876)
Q Consensus 540 i~~-lp~~i-~~L~----~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i-----~~l~~L~~L 604 (876)
+.. .+..+ ..+. +|++|++++|.... .+|..+.++++|++|++++|.+....+..+ ...++|++|
T Consensus 68 l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 68 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence 874 23333 3455 79999999995442 568889999999999999997644333222 235567777
Q ss_pred CceeecCccCCCcccccc---------ccccCCCCCCeeeeCcCCCCCcchhhhccCc-----ccccCCceEEEeccCCc
Q 042981 605 EKFAMGGGVDDISTCRLE---------SLKNLQLLRECGIEGLSNVSHLDEDERLGLH-----NMKNLLRLSLEFDEEGE 670 (876)
Q Consensus 605 ~~~~~~~~~~~ls~~~l~---------~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~-----~l~~L~~L~L~~~~~~~ 670 (876)
+++.+.+. .+..+++|+.|+++++. +.......+. ..++|+.|++++|.+..
T Consensus 148 ----------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 148 ----------QLEYCSLSAASCEPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp ----------ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred ----------ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 33333333 24556888888888742 2222222221 24588888888887642
Q ss_pred cccchHHHHHhhCCCCCCccEEEEeecCCCCC------CchhhcccCCcEEEEecCCCCCC----CC-CCCccc-CceEe
Q 042981 671 EGRRKNQQLLEALQPPLNVKELGIVSYGGNIF------PKWLTSLTNLRDLRLKSCVICEH----FP-PLGKLP-LEKLT 738 (876)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l------p~~l~~l~~L~~L~L~~~~~~~~----lp-~l~~Lp-L~~L~ 738 (876)
.. ...+...+..+++|+.|+++++..... +.....+++|++|+|++|.+... ++ .+..++ |+.|+
T Consensus 214 ~~---~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 214 DN---CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp TH---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HH---HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 21 122334444567888888888764331 12222578899999998877542 22 245577 88888
Q ss_pred ecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCcc
Q 042981 739 LYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPR 818 (876)
Q Consensus 739 L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 818 (876)
+++|..-......+... .....++|+.|++++|. +...... ..+..+..+++|++|++++|..
T Consensus 291 Ls~n~i~~~~~~~l~~~---------------l~~~~~~L~~L~L~~n~-l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 291 LAGNELGDEGARLLCET---------------LLEPGCQLESLWVKSCS-FTAACCS-HFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp CTTCCCHHHHHHHHHHH---------------HTSTTCCCCEEECTTSC-CBGGGHH-HHHHHHHHCSSCCEEECCSSBC
T ss_pred CCCCCCchHHHHHHHHH---------------hccCCccceeeEcCCCC-CchHHHH-HHHHHHhhCCCccEEEccCCcc
Confidence 88875322111111110 00124699999998883 4432110 0123445679999999999954
Q ss_pred CCCCC----CCCCC-CCCccEEEEecCCCch----hhccccccCCCCCCCcCEEEEccCC
Q 042981 819 LRVLP----DYLFQ-STTLQKLSISYCPIME----ELRILEDHRTTDIPRLSSLEIEYCP 869 (876)
Q Consensus 819 l~~lp----~~l~~-l~~L~~L~l~~~~~l~----~l~~~~~~~~~~lp~L~~L~i~~c~ 869 (876)
....+ ..+.. .++|++|++++|..-. .++. .+..+|+|++|++++|+
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA----TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCCCCCEEECCSSS
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH----HHHhCCCccEEECCCCC
Confidence 33222 22222 6799999999997543 3322 34568999999999984
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=8.8e-20 Score=198.70 Aligned_cols=248 Identities=16% Similarity=0.141 Sum_probs=114.6
Q ss_pred ceEEEEeeecCCCCCcc-cccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 444 KVRHLGLNFEGGASFPM-SIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
.+++|+++.|.+..++. .+.++++|++|++.+|. ...+.+..|..+++|++|++ ++|.+..+|.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~~~ 117 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDL---------SYNYLSNLSS 117 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEEC---------CSSCCSSCCH
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEEC---------CCCcCCcCCH
Confidence 44444444444444322 34444444544444332 11222223444444444444 3334444443
Q ss_pred c-cccCcccCeeeccCccccccch--hhccCCcccEEeecCCCCCccc-cccccCcCCCceEecCCCCCCccCCccCCCC
Q 042981 523 N-VRKLIHLKYLNLSELCIERLPK--TLCELYNLQKLDIRWCEDLREL-PAGIGKLKKMRSLLNGGTPLLKYMPIGISKL 598 (876)
Q Consensus 523 ~-i~~L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 598 (876)
. ++++++|++|+|++|.++.+|. .+.++++|++|++++|..+..+ |..+.++++|++|++++|.+.+..|..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~- 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS- 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-
Confidence 3 3444445555554444444443 3444444555554444222222 233444444444444444443333444444
Q ss_pred CCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 599 TSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 599 ~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
+++|+.|++++.. +.......+..+++|+.|++++|.+.......
T Consensus 197 ----------------------------l~~L~~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--- 241 (353)
T 2z80_A 197 ----------------------------IQNVSHLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHFSE--- 241 (353)
T ss_dssp ----------------------------CSEEEEEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred ----------------------------cccCCeecCCCCc----cccchhhhhhhcccccEEECCCCccccccccc---
Confidence 4444455554421 11111112334556666666666553211110
Q ss_pred HHhhCCCCCCccEEEEeecCCC-----CCCchhhcccCCcEEEEecCCCCCCCCC--CCccc-CceEeecCCCC
Q 042981 679 LLEALQPPLNVKELGIVSYGGN-----IFPKWLTSLTNLRDLRLKSCVICEHFPP--LGKLP-LEKLTLYGLYG 744 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~L~L~~~~~ 744 (876)
+........++.+++.++... .+|.++..+++|+.|+|++|.+.. +|. ++.++ |+.|++++|+.
T Consensus 242 -l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 242 -LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred -cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence 111122344555555554432 246666677777777777777653 333 46677 77777777653
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2e-18 Score=199.57 Aligned_cols=258 Identities=19% Similarity=0.186 Sum_probs=153.8
Q ss_pred cceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCC
Q 042981 497 CFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKK 576 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 576 (876)
.+++|++ +++.+..+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++
T Consensus 41 ~l~~L~l---------s~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~ 102 (622)
T 3g06_A 41 GNAVLNV---------GESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPG 102 (622)
T ss_dssp CCCEEEC---------CSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTT
T ss_pred CCcEEEe---------cCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCC
Confidence 3566666 5555555665544 566666666666666665 4566666666666 3445554 4566
Q ss_pred CceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccccccccc-CCCCCCeeeeCcCCCCCcchhhhccCccc
Q 042981 577 MRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKN-LQLLRECGIEGLSNVSHLDEDERLGLHNM 655 (876)
Q Consensus 577 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~-L~~L~~L~l~~~~~~~~~~~~~~~~l~~l 655 (876)
|++|++++|.+ ..+|. .+++|+.| +++.|.+..++. +++|+.|+++++.. ..++ ...
T Consensus 103 L~~L~Ls~N~l-~~l~~---~l~~L~~L----------~L~~N~l~~lp~~l~~L~~L~Ls~N~l-~~l~-------~~~ 160 (622)
T 3g06_A 103 LLELSIFSNPL-THLPA---LPSGLCKL----------WIFGNQLTSLPVLPPGLQELSVSDNQL-ASLP-------ALP 160 (622)
T ss_dssp CCEEEECSCCC-CCCCC---CCTTCCEE----------ECCSSCCSCCCCCCTTCCEEECCSSCC-SCCC-------CCC
T ss_pred CCEEECcCCcC-CCCCC---CCCCcCEE----------ECCCCCCCcCCCCCCCCCEEECcCCcC-CCcC-------Ccc
Confidence 66666666644 33443 34445555 222333333321 24555555555311 1111 123
Q ss_pred ccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-C
Q 042981 656 KNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-L 734 (876)
Q Consensus 656 ~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L 734 (876)
.+|+.|++++|.+.... ..+++|+.|++++|....+|.. +++|+.|++++|.+. .+|. .++ |
T Consensus 161 ~~L~~L~L~~N~l~~l~-----------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L 223 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP-----------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA--LPSGL 223 (622)
T ss_dssp TTCCEEECCSSCCSCCC-----------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC--CCTTC
T ss_pred CCCCEEECCCCCCCCCc-----------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC--CCCCC
Confidence 56777777777653211 2346788888887777776653 467888888888765 3442 246 8
Q ss_pred ceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeec
Q 042981 735 EKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIW 814 (876)
Q Consensus 735 ~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 814 (876)
+.|++++|.... ++ ..+++|+.|+++++ .+..+ +. .+++|+.|+++
T Consensus 224 ~~L~Ls~N~L~~-lp-----------------------~~l~~L~~L~Ls~N-~L~~l------p~---~~~~L~~L~Ls 269 (622)
T 3g06_A 224 KELIVSGNRLTS-LP-----------------------VLPSELKELMVSGN-RLTSL------PM---LPSGLLSLSVY 269 (622)
T ss_dssp CEEECCSSCCSC-CC-----------------------CCCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECC
T ss_pred CEEEccCCccCc-CC-----------------------CCCCcCcEEECCCC-CCCcC------Cc---ccccCcEEeCC
Confidence 888887764321 11 24678888888776 44432 22 56888888888
Q ss_pred cCccCCCCCCCCCCCCCccEEEEecCCCchhh
Q 042981 815 YCPRLRVLPDYLFQSTTLQKLSISYCPIMEEL 846 (876)
Q Consensus 815 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 846 (876)
+| .++.+|..+.++++|+.|+|++|+.....
T Consensus 270 ~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 270 RN-QLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SS-CCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CC-CCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 88 55678888888888888888888865443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.9e-19 Score=189.46 Aligned_cols=239 Identities=19% Similarity=0.128 Sum_probs=120.0
Q ss_pred EEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc---cccc
Q 042981 448 LGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI---PENV 524 (876)
Q Consensus 448 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l---p~~i 524 (876)
+....+.+..+|..+. ++|++|++.++. ...++..+|.++++|++|+| ++|.+..+ |..+
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~L---------~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNK------LQSLPHGVFDKLTQLTKLSL---------SSNGLSFKGCCSQSD 74 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSC------CCCCCTTTTTTCTTCSEEEC---------CSSCCCEEEEEEHHH
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCc------cCccCHhHhhccccCCEEEC---------CCCccCcccCccccc
Confidence 3344444444444332 455566655443 12333344555566666666 33333322 3444
Q ss_pred ccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc--ccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 525 RKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP--AGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
..+++|++|+|++|.++.+|..+.++++|++|++++| .+..+| ..+..+++|++|++++|.+....|..++.+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 4555666666666666655555556666666666655 233333 2455566666666666555444444455555555
Q ss_pred ccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhh
Q 042981 603 TLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEA 682 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 682 (876)
+| +++++.+.. ...+..+..+++|+.|++++|.+.... ...
T Consensus 154 ~L----------~l~~n~l~~----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~ 194 (306)
T 2z66_A 154 VL----------KMAGNSFQE----------------------NFLPDIFTELRNLTFLDLSQCQLEQLS-------PTA 194 (306)
T ss_dssp EE----------ECTTCEEGG----------------------GEECSCCTTCTTCCEEECTTSCCCEEC-------TTT
T ss_pred EE----------ECCCCcccc----------------------ccchhHHhhCcCCCEEECCCCCcCCcC-------HHH
Confidence 55 222222111 001111223333333333333321100 012
Q ss_pred CCCCCCccEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCCCCC-CCCccc--CceEeecCCC
Q 042981 683 LQPPLNVKELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICEHFP-PLGKLP--LEKLTLYGLY 743 (876)
Q Consensus 683 l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~lp-~l~~Lp--L~~L~L~~~~ 743 (876)
+...++|+.|+++++....++. .+..+++|++|+|++|.+.+..| .+..+| |+.|+|++|+
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 2233444444444444444443 56678899999999998877544 466674 8899988875
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.4e-18 Score=197.61 Aligned_cols=262 Identities=18% Similarity=0.109 Sum_probs=188.7
Q ss_pred ceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc
Q 042981 444 KVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN 523 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~ 523 (876)
.++.++++.+.+..+|..+. ++|++|++.+|.. ..++. .+++|++|+| ++|.+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l------~~lp~----~l~~L~~L~L---------s~N~l~~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL------TSLPA----LPPELRTLEV---------SGNQLTSLPV- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC------SCCCC----CCTTCCEEEE---------CSCCCSCCCC-
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC------CCCCC----cCCCCCEEEc---------CCCcCCcCCC-
Confidence 47889999999988887665 8999999987752 22222 5789999999 7777778887
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCc
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRT 603 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 603 (876)
.+++|++|+|++|.++.+|. .+.+|++|++++| .+..+|.. +++|++|++++|.+ ..+|.. +.+|+.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~---~~~L~~ 165 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQL-ASLPAL---PSELCK 165 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCC-SCCCCC---CTTCCE
T ss_pred --CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcC-CCcCCc---cCCCCE
Confidence 67899999999999999987 6789999999998 57778874 48899999999966 445543 344555
Q ss_pred cCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhC
Q 042981 604 LEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEAL 683 (876)
Q Consensus 604 L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l 683 (876)
| +++.+.+..++ ..+++|+.|++++|.+....
T Consensus 166 L----------~L~~N~l~~l~---------------------------~~~~~L~~L~Ls~N~l~~l~----------- 197 (622)
T 3g06_A 166 L----------WAYNNQLTSLP---------------------------MLPSGLQELSVSDNQLASLP----------- 197 (622)
T ss_dssp E----------ECCSSCCSCCC---------------------------CCCTTCCEEECCSSCCSCCC-----------
T ss_pred E----------ECCCCCCCCCc---------------------------ccCCCCcEEECCCCCCCCCC-----------
Confidence 5 22233322221 12356677777776653211
Q ss_pred CCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCC
Q 042981 684 QPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDD 762 (876)
Q Consensus 684 ~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~ 762 (876)
..+++|+.|.+.+|....+|.. +++|+.|+|++|.+.+ +| ..++ |+.|+|++|... .++
T Consensus 198 ~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~-~lp------------- 257 (622)
T 3g06_A 198 TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLT-SLP------------- 257 (622)
T ss_dssp CCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS-CCC-------------
T ss_pred CccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCC-cCC-------------
Confidence 1235788888888887777763 5889999999998865 55 4567 999999987532 111
Q ss_pred CCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCC
Q 042981 763 PSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDY 825 (876)
Q Consensus 763 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 825 (876)
. .+++|+.|++++| .+..+ |..+..+++|+.|+|++|+.....|..
T Consensus 258 -------~---~~~~L~~L~Ls~N-~L~~l------p~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 258 -------M---LPSGLLSLSVYRN-QLTRL------PESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp -------C---CCTTCCEEECCSS-CCCSC------CGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred -------c---ccccCcEEeCCCC-CCCcC------CHHHhhccccCEEEecCCCCCCcCHHH
Confidence 1 4789999999887 45533 556789999999999999766555543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=192.23 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=135.6
Q ss_pred CCCcccccccccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
.+..+..+|..+. .+|++|+|++|.|+.++ ..+.++++|++|+|++|......|..|.++++|++|++++|.+....
T Consensus 51 ~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 51 VRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC
Confidence 4555566665554 46666677666666554 45666666777777666433333455666666777776666553332
Q ss_pred CccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcc
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEE 671 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 671 (876)
+..+..+++|++| +++.+.+..+. ...+.++++|+.|+++.|..
T Consensus 129 ~~~~~~l~~L~~L----------~L~~N~i~~~~-----------------------~~~~~~l~~L~~L~l~~~~~--- 172 (440)
T 3zyj_A 129 NGAFVYLSKLKEL----------WLRNNPIESIP-----------------------SYAFNRIPSLRRLDLGELKR--- 172 (440)
T ss_dssp TTTSCSCSSCCEE----------ECCSCCCCEEC-----------------------TTTTTTCTTCCEEECCCCTT---
T ss_pred HhHhhccccCcee----------eCCCCcccccC-----------------------HHHhhhCcccCEeCCCCCCC---
Confidence 3345555555555 22232222111 11233445555555544311
Q ss_pred ccchHHHHHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeC
Q 042981 672 GRRKNQQLLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVG 749 (876)
Q Consensus 672 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~ 749 (876)
...+ +..+..+++|++|+|++|.+. .+|.+..++ |+.|+|++|......+
T Consensus 173 ---------------------------l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 173 ---------------------------LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp ---------------------------CCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECT
T ss_pred ---------------------------cceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccCh
Confidence 0111 224556667777777777653 456666677 7777777765433322
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCC-CCCCC
Q 042981 750 NEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP-DYLFQ 828 (876)
Q Consensus 750 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~ 828 (876)
. .+..+++|+.|+++++ .+... .+..+..+++|+.|+|++|. ++.+| ..+..
T Consensus 225 ~--------------------~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 277 (440)
T 3zyj_A 225 G--------------------SFQGLMHLQKLWMIQS-QIQVI-----ERNAFDNLQSLVEINLAHNN-LTLLPHDLFTP 277 (440)
T ss_dssp T--------------------TTTTCTTCCEEECTTC-CCCEE-----CTTSSTTCTTCCEEECTTSC-CCCCCTTTTSS
T ss_pred h--------------------hhccCccCCEEECCCC-ceeEE-----ChhhhcCCCCCCEEECCCCC-CCccChhHhcc
Confidence 2 2335777888877665 33332 23456678888888888884 44444 45677
Q ss_pred CCCccEEEEecCCC
Q 042981 829 STTLQKLSISYCPI 842 (876)
Q Consensus 829 l~~L~~L~l~~~~~ 842 (876)
+++|+.|+|++|+.
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 88888888888874
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=7.7e-19 Score=187.19 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=41.3
Q ss_pred cCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCC-CccEEEEecCCCc
Q 042981 774 AFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQST-TLQKLSISYCPIM 843 (876)
Q Consensus 774 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~~l 843 (876)
.+++|+.|+++++ .+.... +..+..+++|+.|++++|+.....|..+..++ +|+.|++++|+..
T Consensus 197 ~l~~L~~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 197 SLSSLQVLNMSHN-NFFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCTTCCEEECTTS-CCSBCC-----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCEEECCCC-ccCccC-----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 4556666655554 222221 22455678888888888866666777777774 8888888888753
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.1e-18 Score=193.11 Aligned_cols=237 Identities=22% Similarity=0.218 Sum_probs=137.3
Q ss_pred CCCcccccccccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
.+..+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|......|..|.++++|++|++++|.+....
T Consensus 62 ~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 62 TRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 4445555665443 4666666666666655 345666666666666666433334455666666666666666553333
Q ss_pred CccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcc
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEE 671 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 671 (876)
+..++.+++|++| +++.+.+..+. ...+.++++|+.|+++.|..
T Consensus 140 ~~~~~~l~~L~~L----------~L~~N~l~~~~-----------------------~~~~~~l~~L~~L~l~~~~~--- 183 (452)
T 3zyi_A 140 SGAFEYLSKLREL----------WLRNNPIESIP-----------------------SYAFNRVPSLMRLDLGELKK--- 183 (452)
T ss_dssp TTTSSSCTTCCEE----------ECCSCCCCEEC-----------------------TTTTTTCTTCCEEECCCCTT---
T ss_pred hhhhcccCCCCEE----------ECCCCCcceeC-----------------------HhHHhcCCcccEEeCCCCCC---
Confidence 3335555555555 22232222111 11234445555555544211
Q ss_pred ccchHHHHHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeC
Q 042981 672 GRRKNQQLLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVG 749 (876)
Q Consensus 672 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~ 749 (876)
...+ +..+..+++|++|+|++|.+. .+|.+..++ |+.|+|++|......+
T Consensus 184 ---------------------------l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 184 ---------------------------LEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp ---------------------------CCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred ---------------------------ccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECcCCcCcccCc
Confidence 0111 223556677777777777664 346677777 7777777776444333
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCC-CCCCC
Q 042981 750 NEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP-DYLFQ 828 (876)
Q Consensus 750 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~ 828 (876)
.. +..+++|+.|+++++ .+... .+..+..+++|+.|+|++|. ++.+| ..+..
T Consensus 236 ~~--------------------~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 288 (452)
T 3zyi_A 236 GS--------------------FHGLSSLKKLWVMNS-QVSLI-----ERNAFDGLASLVELNLAHNN-LSSLPHDLFTP 288 (452)
T ss_dssp GG--------------------GTTCTTCCEEECTTS-CCCEE-----CTTTTTTCTTCCEEECCSSC-CSCCCTTSSTT
T ss_pred cc--------------------ccCccCCCEEEeCCC-cCceE-----CHHHhcCCCCCCEEECCCCc-CCccChHHhcc
Confidence 22 335778888877765 23332 23456788899999999884 45554 45677
Q ss_pred CCCccEEEEecCCC
Q 042981 829 STTLQKLSISYCPI 842 (876)
Q Consensus 829 l~~L~~L~l~~~~~ 842 (876)
+++|+.|+|++|+.
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 88999999988874
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=191.95 Aligned_cols=191 Identities=21% Similarity=0.232 Sum_probs=111.0
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~ 525 (876)
.+......+..+|..+. ++++.|++.+|. ...+....|.++++|++|+| ++|.+..++ ..+.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L---------s~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQL---------SRNHIRTIEIGAFN 109 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCC------CCEECTTTTSSCSSCCEEEC---------CSSCCCEECGGGGT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEEC---------CCCcCCccChhhcc
Confidence 44555555566665543 567777776554 23333444677777777777 555555554 4567
Q ss_pred cCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCc-cCCCCCCCCc
Q 042981 526 KLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPI-GISKLTSLRT 603 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~ 603 (876)
++++|++|+|++|.++.+|. .+.++++|++|+|++|......+..+.++++|++|++++|.....+|. .+.++++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 77777777777777776665 467777777777777743333333566777777777777555555554 4566666666
Q ss_pred cCceeecCccCCCccccccc---cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 604 LEKFAMGGGVDDISTCRLES---LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 604 L~~~~~~~~~~~ls~~~l~~---L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
| +++.+.+.. +..+++|+.|+++++ .+....+..+.++++|+.|++++|.+
T Consensus 190 L----------~L~~n~l~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 190 L----------NLAMCNLREIPNLTPLIKLDELDLSGN----HLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp E----------ECTTSCCSSCCCCTTCSSCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred e----------cCCCCcCccccccCCCcccCEEECCCC----ccCccChhhhccCccCCEEECCCCce
Confidence 6 333333332 334445555555542 22233334455566666666665544
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3.5e-18 Score=192.67 Aligned_cols=190 Identities=22% Similarity=0.290 Sum_probs=109.5
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~ 525 (876)
.+.....++..+|..+. ++|+.|++.+|. ...+.+..|.++++|++|+| ++|.+..++ ..+.
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L---------s~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQL---------GRNSIRQIEVGAFN 120 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCEECTTTTT
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCc------CceECHHHcCCCCCCCEEEC---------CCCccCCcChhhcc
Confidence 44445555555555443 567777776554 23334444667777777777 555555544 5567
Q ss_pred cCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCCccCCc-cCCCCCCCC
Q 042981 526 KLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLLKYMPI-GISKLTSLR 602 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~ 602 (876)
++++|++|+|++|.++.+|.. +.++++|++|+|++|. +..+| ..+.++++|++|++++|..++.+|. .+.++++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 777777777777777766654 6667777777777774 33443 3566777777777777555555554 356666666
Q ss_pred ccCceeecCccCCCccccccc---cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 603 TLEKFAMGGGVDDISTCRLES---LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l~~---L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
.| +++.+.+.. +..+++|+.|++++ +.+....+..+.++++|+.|++++|.+
T Consensus 200 ~L----------~L~~n~l~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 200 YL----------NLGMCNIKDMPNLTPLVGLEELEMSG----NHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EE----------ECTTSCCSSCCCCTTCTTCCEEECTT----SCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EE----------ECCCCcccccccccccccccEEECcC----CcCcccCcccccCccCCCEEEeCCCcC
Confidence 66 333333322 33344455555554 222233334455556666666655544
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.1e-18 Score=181.75 Aligned_cols=222 Identities=18% Similarity=0.178 Sum_probs=139.5
Q ss_pred EEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-cccc
Q 042981 446 RHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENV 524 (876)
Q Consensus 446 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i 524 (876)
+.++...+.+..+|..+ .++|+.|++.++. ...++...|..+++|++|++ ++|.+..+ |..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~ 76 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR------ISHVPAASFRACRNLTILWL---------HSNVLARIDAAAF 76 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCEECTTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc------CCccCHHHcccCCCCCEEEC---------CCCccceeCHhhc
Confidence 45566666666666543 4678888886665 23444455777888888888 66666665 5667
Q ss_pred ccCcccCeeeccCcc-cccc-chhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 525 RKLIHLKYLNLSELC-IERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
.++++|++|+|++|. ++.+ |..+.++++|++|++++|......|..+.++++|++|++++|.+....+..++.+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 788888888888886 7766 56678888888888888854444466677888888888888866544444466666666
Q ss_pred ccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhh
Q 042981 603 TLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEA 682 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 682 (876)
+| +++.+.+..+ ....+..+++|+.|++++|.+.... ...
T Consensus 157 ~L----------~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~ 196 (285)
T 1ozn_A 157 HL----------FLHGNRISSV-----------------------PERAFRGLHSLDRLLLHQNRVAHVH-------PHA 196 (285)
T ss_dssp EE----------ECCSSCCCEE-----------------------CTTTTTTCTTCCEEECCSSCCCEEC-------TTT
T ss_pred EE----------ECCCCccccc-----------------------CHHHhcCccccCEEECCCCcccccC-------HhH
Confidence 66 3333322211 1122445566666666666543111 122
Q ss_pred CCCCCCccEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCC
Q 042981 683 LQPPLNVKELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICE 724 (876)
Q Consensus 683 l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~ 724 (876)
+..+++|+.|++.++....+|. .+..+++|++|+|++|++..
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 3334455555555555555553 46677778888887777643
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.8e-20 Score=219.89 Aligned_cols=381 Identities=15% Similarity=0.136 Sum_probs=230.1
Q ss_pred CCceEEEEeeecCCCCC-ccccc-CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGGASF-PMSIH-GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+++++|+++.+.+... +..+. .+++|++|++.++. .+....+..++..+++|++|+|++|.+. +.....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~----~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVD----DVSGHW 175 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEE----CCCGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccC----CcchHH
Confidence 45788999998876532 33343 58999999998763 1233345666778999999999555432 111122
Q ss_pred cccccccCcccCeeeccCcc--cc--ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCC------Cc
Q 042981 520 IPENVRKLIHLKYLNLSELC--IE--RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPL------LK 589 (876)
Q Consensus 520 lp~~i~~L~~Lr~L~Ls~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------~~ 589 (876)
++.....+++|++|+|++|. +. .++..+.++++|++|++++|.....+|..+.++++|++|+++.+.. ..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334577899999999986 32 3444456689999999999976777888889999999999876632 12
Q ss_pred cCCccCCCCCCCCccCceeecCccCCCccccccc-cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 590 YMPIGISKLTSLRTLEKFAMGGGVDDISTCRLES-LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 590 ~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~-L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
.++..+.++++|+.|..+. +.....+.. +..+++|+.|+++++. +. .......+..+++|+.|++++| .
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~------~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~-~ 325 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFW------DAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY-I 325 (594)
T ss_dssp HHHHHHHTCTTCCEEECCB------TCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred HHHHHHhcCCCcccccCCc------ccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc-c
Confidence 3444567778888772111 111112222 2367889999998854 22 1223333567899999999977 3
Q ss_pred CccccchHHHHHhhCCCCCCccEEEEeec------CCCCCCc----hh-hcccCCcEEEEecCCCCCC-CCCCC-ccc-C
Q 042981 669 GEEGRRKNQQLLEALQPPLNVKELGIVSY------GGNIFPK----WL-TSLTNLRDLRLKSCVICEH-FPPLG-KLP-L 734 (876)
Q Consensus 669 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~------~~~~lp~----~l-~~l~~L~~L~L~~~~~~~~-lp~l~-~Lp-L 734 (876)
. ..........+++|++|++.++ ....+.. .+ ..+++|++|.+..+.+... +..+. .+| |
T Consensus 326 ~------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L 399 (594)
T 2p1m_B 326 E------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399 (594)
T ss_dssp H------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred C------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence 1 1111112223678999999653 1112211 12 2588999998877776542 22233 478 9
Q ss_pred ceEeec-----CCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccC-ccccc
Q 042981 735 EKLTLY-----GLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENIS-IMPRL 808 (876)
Q Consensus 735 ~~L~L~-----~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L 808 (876)
+.|++. +|..+...+.. ...+..+..+++|+.|++++ ++.+..+ ..+. .+++|
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~--------------~~~~~l~~~~~~L~~L~L~~--~l~~~~~-----~~l~~~~~~L 458 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLD--------------IGFGAIVEHCKDLRRLSLSG--LLTDKVF-----EYIGTYAKKM 458 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTH--------------HHHHHHHHHCTTCCEEECCS--SCCHHHH-----HHHHHHCTTC
T ss_pred ceeEeecccCCCcccccCCchh--------------hHHHHHHhhCCCccEEeecC--cccHHHH-----HHHHHhchhc
Confidence 999998 33333211100 00001133577888888755 3333221 1222 37888
Q ss_pred ceeeeccCccCCCCCCCC-CCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCC
Q 042981 809 SSLTIWYCPRLRVLPDYL-FQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPK 870 (876)
Q Consensus 809 ~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~ 870 (876)
+.|+|++|......+..+ ..+++|++|+|++|+. ...... .....+|+|+.|++++|+.
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~--~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL--ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH--HTGGGGGGSSEEEEESSCC
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH--HHHHhCCCCCEEeeeCCCC
Confidence 888888885422222122 4478888888888876 222111 1234578888888888864
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=9.5e-20 Score=213.58 Aligned_cols=378 Identities=16% Similarity=0.055 Sum_probs=214.0
Q ss_pred CceEEEEeeecCC-C--CCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 443 DKVRHLGLNFEGG-A--SFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 443 ~~lr~L~l~~~~~-~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.++++|.+..+.. . .++.....+++|++|++.+|..... ....+..++..+++|+.|++++|.+. +.....
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~~L~~L~L~~n~~~----~~~~~~ 211 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHELAQHNTSLEVLNFYMTEFA----KISPKD 211 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC--CSHHHHHHHHHCCCCCEEECTTCCCS----SCCHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc--chhHHHHHHhcCCCccEEEeeccCCC----ccCHHH
Confidence 3477888776541 1 1122234678888888876641110 11224455677888888888444331 111123
Q ss_pred cccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCC---ccccccccCcCCCceEecCCCCCCccCCccCC
Q 042981 520 IPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDL---RELPAGIGKLKKMRSLLNGGTPLLKYMPIGIS 596 (876)
Q Consensus 520 lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 596 (876)
++..+.++++|++|+|++|.+..+|..+.++++|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~ 290 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFP 290 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHh
Confidence 555566788888888888888888888888888888888754222 234455677788888888775 3355666667
Q ss_pred CCCCCCccCceeecCccCCCccccc-cccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEe----------
Q 042981 597 KLTSLRTLEKFAMGGGVDDISTCRL-ESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEF---------- 665 (876)
Q Consensus 597 ~l~~L~~L~~~~~~~~~~~ls~~~l-~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~---------- 665 (876)
.+++|++|....+. +....+ ..+..+++|+.|.+.+. ............+++|+.|+++.
T Consensus 291 ~~~~L~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L~~~----~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-----LETEDHCTLIQKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGCCEEEETTCC-----CCHHHHHHHHTTCTTCCEEEEEGG----GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hcCCCcEEecCCCc-----CCHHHHHHHHHhCcCCCEEeccCc----cCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 77777777322111 011111 22466778888877631 11222333345677888888883
Q ss_pred -ccCCccccchHHHHHhhCCCCCCccEEEEeecCCCC-CCchhh-cccCCcEEEEecCC---CCCCCCC-------CCcc
Q 042981 666 -DEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNI-FPKWLT-SLTNLRDLRLKSCV---ICEHFPP-------LGKL 732 (876)
Q Consensus 666 -~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~~~---~~~~lp~-------l~~L 732 (876)
+.+. ..........+++|++|.+..+.... .+..++ .+++|+.|+|+++. ..+..|. +..+
T Consensus 362 ~~~~~------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 362 EGLVS------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp TCCCC------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cCccC------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 3332 11111112235678888885554322 133344 37888888887432 2222211 3446
Q ss_pred c-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCccccccee
Q 042981 733 P-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSL 811 (876)
Q Consensus 733 p-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 811 (876)
+ |+.|+++.|.. ...+..+.. ....+++|+.|+++++. +.+..+ +..+..+++|++|
T Consensus 436 ~~L~~L~L~~~~~-~l~~~~~~~----------------~~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L 493 (592)
T 3ogk_B 436 KKLRRFAFYLRQG-GLTDLGLSY----------------IGQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKL 493 (592)
T ss_dssp TTCCEEEEECCGG-GCCHHHHHH----------------HHHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEE
T ss_pred CCCCEEEEecCCC-CccHHHHHH----------------HHHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCee
Confidence 7 88888876543 111111111 01247888888887763 443222 2234567888888
Q ss_pred eeccCccCC-CCCCCCCCCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEcc
Q 042981 812 TIWYCPRLR-VLPDYLFQSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEY 867 (876)
Q Consensus 812 ~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~ 867 (876)
+|++|+... .++..+..+++|+.|+|++|+.. ..... .....+|.|....+..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it-~~~~~--~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS-MTGQD--LMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC-TTCTT--GGGGCCTTEEEEEECC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCC-HHHHH--HHHHhCCCcEEEEecC
Confidence 888886322 24444456788888888888732 21110 1123556665555543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.6e-19 Score=193.20 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=135.5
Q ss_pred CcceEEecCccccccCCCCCccccccccc-ccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccC
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPENV-RKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i-~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
..++.+++ +.+.+...+..+ ..+++|++|+|++|.++.++ ..++++++|++|+|++|. +...+. +..
T Consensus 10 ~~l~i~~l---------s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~ 78 (317)
T 3o53_A 10 NRYKIEKV---------TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LES 78 (317)
T ss_dssp TEEEEESC---------CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETT
T ss_pred CceeEeec---------cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhh
Confidence 45666666 566666555443 56778999999999988776 578899999999999884 444444 888
Q ss_pred cCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCc
Q 042981 574 LKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLH 653 (876)
Q Consensus 574 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 653 (876)
+++|++|++++|.+ ..+| ..++|++| +++.+.+..+. ..
T Consensus 79 l~~L~~L~Ls~n~l-~~l~----~~~~L~~L----------~l~~n~l~~~~--------------------------~~ 117 (317)
T 3o53_A 79 LSTLRTLDLNNNYV-QELL----VGPSIETL----------HAANNNISRVS--------------------------CS 117 (317)
T ss_dssp CTTCCEEECCSSEE-EEEE----ECTTCCEE----------ECCSSCCSEEE--------------------------EC
T ss_pred cCCCCEEECcCCcc-cccc----CCCCcCEE----------ECCCCccCCcC--------------------------cc
Confidence 89999999988855 2232 22455555 22222222111 01
Q ss_pred ccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCC-CC-C
Q 042981 654 NMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFP-PL-G 730 (876)
Q Consensus 654 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l-~ 730 (876)
.+++|+.|++++|.+ ..+ |..+..+++|++|+|++|.+.+..+ .+ +
T Consensus 118 ~~~~L~~L~l~~N~l-------------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 118 RGQGKKNIYLANNKI-------------------------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp CCSSCEEEECCSSCC-------------------------------CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred ccCCCCEEECCCCCC-------------------------------CCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 123444555544433 222 2244455566666666665544222 12 2
Q ss_pred ccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccc
Q 042981 731 KLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLS 809 (876)
Q Consensus 731 ~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 809 (876)
.++ |+.|++++|......+ ...+++|+.|+++++ .+... +..+..+++|+
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~----------------------~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~ 217 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKG----------------------QVVFAKLKTLDLSSN-KLAFM------GPEFQSAAGVT 217 (317)
T ss_dssp GTTTCCEEECTTSCCCEEEC----------------------CCCCTTCCEEECCSS-CCCEE------CGGGGGGTTCS
T ss_pred ccCcCCEEECCCCcCccccc----------------------ccccccCCEEECCCC-cCCcc------hhhhcccCccc
Confidence 445 6666666554322211 113566666666655 33322 22355667777
Q ss_pred eeeeccCccCCCCCCCCCCCCCccEEEEecCCCc
Q 042981 810 SLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPIM 843 (876)
Q Consensus 810 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 843 (876)
.|++++| .++.+|..+..+++|+.|++++|+..
T Consensus 218 ~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 218 WISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 7777776 44556666666777777777777654
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=6.7e-19 Score=188.39 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=46.0
Q ss_pred hhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCc
Q 042981 487 ILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLR 565 (876)
Q Consensus 487 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~ 565 (876)
.+..++..+++|++|+| ++|.+..++ ..++++++|++|+|++|.++.+++ +..+++|++|++++| .+.
T Consensus 25 ~~~~~~~~~~~L~~L~L---------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~ 93 (317)
T 3o53_A 25 ALASLRQSAWNVKELDL---------SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQ 93 (317)
T ss_dssp HHHHHHTTGGGCSEEEC---------TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEE
T ss_pred hHHHHhccCCCCCEEEC---------cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccc
Confidence 34444555556666666 444444443 345556666666666666554443 555666666666655 233
Q ss_pred cccccccCcCCCceEecCCCCC
Q 042981 566 ELPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 566 ~lp~~i~~L~~L~~L~l~~~~~ 587 (876)
.+| .+++|++|++++|.+
T Consensus 94 ~l~----~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 94 ELL----VGPSIETLHAANNNI 111 (317)
T ss_dssp EEE----ECTTCCEEECCSSCC
T ss_pred ccc----CCCCcCEEECCCCcc
Confidence 333 235566666666544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.9e-18 Score=184.41 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.0
Q ss_pred cccceeeeccCccCCCCCCCCCCCCCccEEEEecCCC
Q 042981 806 PRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYCPI 842 (876)
Q Consensus 806 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 842 (876)
++|++|++++| .++.+|. +..+++|++|++++|+.
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 77888888887 4555665 77788888888888763
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.3e-19 Score=186.84 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=110.8
Q ss_pred cCcccCeeeccCcccc-ccchhh--ccCCcccEEeecCCCCCccccccccCc-----CCCceEecCCCCCCccCCccCCC
Q 042981 526 KLIHLKYLNLSELCIE-RLPKTL--CELYNLQKLDIRWCEDLRELPAGIGKL-----KKMRSLLNGGTPLLKYMPIGISK 597 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~ 597 (876)
++++|++|+|++|.++ .+|..+ +.+++|++|+|++|. +...|..+..+ ++|++|++++|.+.+..|..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3444445555444444 344433 444445555554442 22224444443 44455555444443333344444
Q ss_pred CCCCCccCceeecCccCCCccccc-------ccc--ccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 598 LTSLRTLEKFAMGGGVDDISTCRL-------ESL--KNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 598 l~~L~~L~~~~~~~~~~~ls~~~l-------~~L--~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
+++|++| +++.+.+ ..+ ..+++|+.|+++++. +..........+.++++|+.|++++|.+
T Consensus 172 l~~L~~L----------~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 172 FPALSTL----------DLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CSSCCEE----------ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCCEE----------ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 4444444 2222221 111 444555555555521 1111122222345667888888888876
Q ss_pred CccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCC
Q 042981 669 GEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYG 744 (876)
Q Consensus 669 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~ 744 (876)
.+..+ ...+..+++|+.|++++|....+|.++. ++|++|+|++|++.+. |.++.++ |+.|++++|+.
T Consensus 241 ~~~~~------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 241 RDAAG------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCC------CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred Ccccc------hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 42210 1223345788899998888888888876 8999999999998665 7788999 99999998863
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=8.6e-18 Score=190.42 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=143.3
Q ss_pred ccccccccC----cccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCc
Q 042981 519 EIPENVRKL----IHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPI 593 (876)
Q Consensus 519 ~lp~~i~~L----~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 593 (876)
.+|..+..+ ++|++|+|++|.++.+| ..++++++|++|+|++|. +...+. +..+++|++|++++|.+ ..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYV-QELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEE-EEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcC-CCCCC
Confidence 345444443 37888888888888665 578888888888888884 443333 78888888888888854 22332
Q ss_pred cCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcccc
Q 042981 594 GISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGR 673 (876)
Q Consensus 594 ~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 673 (876)
.++|++| +++.+.+..+. + ..+++|+.|++++|.+
T Consensus 98 ----~~~L~~L----------~L~~N~l~~~~-----------------------~---~~l~~L~~L~L~~N~l----- 132 (487)
T 3oja_A 98 ----GPSIETL----------HAANNNISRVS-----------------------C---SRGQGKKNIYLANNKI----- 132 (487)
T ss_dssp ----CTTCCEE----------ECCSSCCCCEE-----------------------E---CCCSSCEEEECCSSCC-----
T ss_pred ----CCCcCEE----------ECcCCcCCCCC-----------------------c---cccCCCCEEECCCCCC-----
Confidence 1444444 22222221110 0 1123455555554433
Q ss_pred chHHHHHhhCCCCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCC-CCC-ccc-CceEeecCCCCceEeC
Q 042981 674 RKNQQLLEALQPPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFP-PLG-KLP-LEKLTLYGLYGVKRVG 749 (876)
Q Consensus 674 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~-~Lp-L~~L~L~~~~~l~~~~ 749 (876)
..+ |..++.+++|+.|+|++|.+.+..| .+. .++ |+.|+|++|......+
T Consensus 133 --------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 133 --------------------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp --------------------------CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred --------------------------CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 322 4456667777777777777765333 233 566 7777777766433211
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCC
Q 042981 750 NEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQS 829 (876)
Q Consensus 750 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 829 (876)
...+++|+.|+++++ .+... +..+..+++|+.|++++| .+..+|..+..+
T Consensus 187 ----------------------~~~l~~L~~L~Ls~N-~l~~~------~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l 236 (487)
T 3oja_A 187 ----------------------QVVFAKLKTLDLSSN-KLAFM------GPEFQSAAGVTWISLRNN-KLVLIEKALRFS 236 (487)
T ss_dssp ----------------------CCCCTTCCEEECCSS-CCCEE------CGGGGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred ----------------------cccCCCCCEEECCCC-CCCCC------CHhHcCCCCccEEEecCC-cCcccchhhccC
Confidence 124677888877766 34432 234667888888888888 455688888888
Q ss_pred CCccEEEEecCCCc-hhhccccccCCCCCCCcCEEEE
Q 042981 830 TTLQKLSISYCPIM-EELRILEDHRTTDIPRLSSLEI 865 (876)
Q Consensus 830 ~~L~~L~l~~~~~l-~~l~~~~~~~~~~lp~L~~L~i 865 (876)
++|+.|++++|+.. ..++. .+..+|.|+.|.+
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~----~~~~l~~L~~l~~ 269 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAK 269 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHH----HHTTCHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHH----HHHhCCCCcEEec
Confidence 88888888888765 22221 2344555554444
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.1e-16 Score=168.42 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=59.5
Q ss_pred CCCcccccccccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
+++.+..+|..+ .++|++|+|++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|.....+
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 566666777544 3577888888888777664 5777788888888877444444667777888888888777523333
Q ss_pred -CccCCCCCCCCcc
Q 042981 592 -PIGISKLTSLRTL 604 (876)
Q Consensus 592 -p~~i~~l~~L~~L 604 (876)
|..+..+++|++|
T Consensus 97 ~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 97 DPATFHGLGRLHTL 110 (285)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred CHHHhcCCcCCCEE
Confidence 4455555555555
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.1e-17 Score=184.82 Aligned_cols=214 Identities=13% Similarity=0.092 Sum_probs=122.5
Q ss_pred cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchh
Q 042981 467 RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKT 546 (876)
Q Consensus 467 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~ 546 (876)
+|++|++.+|. ...+++..|..+++|++|+| ++|.+..+++ ++.+++|++|+|++|.|+.+|.
T Consensus 35 ~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 35 NVKELDLSGNP------LSQISAADLAPFTKLELLNL---------SSNVLYETLD-LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp GCCEEECCSSC------CCCCCGGGGTTCTTCCEEEC---------TTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-
T ss_pred CccEEEeeCCc------CCCCCHHHHhCCCCCCEEEe---------eCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-
Confidence 56666665544 22233344566666666666 4444444333 5666666666666666665553
Q ss_pred hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCcccccccccc
Q 042981 547 LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKN 626 (876)
Q Consensus 547 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~ 626 (876)
.++|++|++++|. +..+|. ..+++|++|++++|.+.+..|..++++++|++| +++.|.+.
T Consensus 98 ---~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L----------~Ls~N~l~---- 157 (487)
T 3oja_A 98 ---GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL----------DLKLNEID---- 157 (487)
T ss_dssp ---CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE----------ECTTSCCC----
T ss_pred ---CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEE----------ECCCCCCC----
Confidence 2566666666663 333332 234566666666665554445455555555555 22222221
Q ss_pred CCCCCCeeeeCcCCCCCcchhhhccCc-ccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCch
Q 042981 627 LQLLRECGIEGLSNVSHLDEDERLGLH-NMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKW 705 (876)
Q Consensus 627 L~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~ 705 (876)
...+..+. .+++|+.|+|++|.+.+. .....+++|+.|++++|....+|..
T Consensus 158 -------------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 158 -------------------TVNFAELAASSDTLEHLNLQYNFIYDV---------KGQVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp -------------------EEEGGGGGGGTTTCCEEECTTSCCCEE---------ECCCCCTTCCEEECCSSCCCEECGG
T ss_pred -------------------CcChHHHhhhCCcccEEecCCCccccc---------cccccCCCCCEEECCCCCCCCCCHh
Confidence 11112222 455566666665554321 1122356677777777776777777
Q ss_pred hhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCc
Q 042981 706 LTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGV 745 (876)
Q Consensus 706 l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l 745 (876)
+..+++|+.|+|++|.+.+..+.++.++ |+.|++++|+..
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 8888899999999988876444577788 888888887643
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=6.1e-19 Score=206.86 Aligned_cols=357 Identities=15% Similarity=0.152 Sum_probs=221.1
Q ss_pred cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCC-cccc--cccccccCcccCeeeccCcc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPN-LIRE--IPENVRKLIHLKYLNLSELC 539 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-~i~~--lp~~i~~L~~Lr~L~Ls~~~ 539 (876)
..+++|++|++.++. +....+..+...+++|++|+| .+| .+.. ++..+.++++|++|+|++|.
T Consensus 102 ~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L---------~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVL---------SSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEE---------ESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred HhCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeC---------CCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 467899999997764 344445554457999999999 544 3333 44555689999999999998
Q ss_pred ccc-----cchhhccCCcccEEeecCCC-CC--ccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecC
Q 042981 540 IER-----LPKTLCELYNLQKLDIRWCE-DL--RELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGG 611 (876)
Q Consensus 540 i~~-----lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 611 (876)
++. ++.....+++|++|++++|. .+ ..++..+..+++|++|++++|.....+|..+..+++|+.|.......
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 663 33444478899999999985 11 12333345679999999999965566777778888888884221111
Q ss_pred ccCCCccccc----cccccCCCCCCe-eeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCC
Q 042981 612 GVDDISTCRL----ESLKNLQLLREC-GIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPP 686 (876)
Q Consensus 612 ~~~~ls~~~l----~~L~~L~~L~~L-~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~ 686 (876)
++..+.+ ..+.++++|+.| .+.. ......+..+..+++|+.|++++|.+. .......+..+
T Consensus 248 ---~~~~~~~~~l~~~l~~~~~L~~Ls~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~l~------~~~l~~~~~~~ 313 (594)
T 2p1m_B 248 ---EVRPDVYSGLSVALSGCKELRCLSGFWD-----AVPAYLPAVYSVCSRLTTLNLSYATVQ------SYDLVKLLCQC 313 (594)
T ss_dssp ---CCCHHHHHHHHHHHHTCTTCCEEECCBT-----CCGGGGGGGHHHHTTCCEEECTTCCCC------HHHHHHHHTTC
T ss_pred ---ccchhhHHHHHHHHhcCCCcccccCCcc-----cchhhHHHHHHhhCCCCEEEccCCCCC------HHHHHHHHhcC
Confidence 1111111 245566777766 2322 112333444557899999999988753 22233445567
Q ss_pred CCccEEEEeecCCCC-CCchhhcccCCcEEEEecCC---------CCC-CCCCC-Cccc-CceEeecCCCCceEeCcccc
Q 042981 687 LNVKELGIVSYGGNI-FPKWLTSLTNLRDLRLKSCV---------ICE-HFPPL-GKLP-LEKLTLYGLYGVKRVGNEFL 753 (876)
Q Consensus 687 ~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~~~---------~~~-~lp~l-~~Lp-L~~L~L~~~~~l~~~~~~~~ 753 (876)
++|+.|++.++.... ++.....+++|++|+|.+|. +.+ .+..+ ..+| |+.|.+..+. +... .+.
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~--~~~ 390 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNA--ALI 390 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHH--HHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHH--HHH
Confidence 899999999873211 22233368999999996542 211 11112 2367 8888665433 2111 000
Q ss_pred cCCCCCCCCCCCCCCCcccccCcccceeecc-----ccccccccccccccccccCcccccceeeeccCccCCCCCCCCC-
Q 042981 754 GIEGSSEDDPSSSSSSSSVIAFPKLKSLHIG-----AMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLF- 827 (876)
Q Consensus 754 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~- 827 (876)
. ....+|+|+.|++. +|..+.........+..+..+++|+.|+++++ .....+..+.
T Consensus 391 ~----------------l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~l~~ 453 (594)
T 2p1m_B 391 T----------------IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGT 453 (594)
T ss_dssp H----------------HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHH
T ss_pred H----------------HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHHHHH
Confidence 0 01258999999998 45555533211111222457899999999773 2222222233
Q ss_pred CCCCccEEEEecCCCchhhccccccCCCCCCCcCEEEEccCCC
Q 042981 828 QSTTLQKLSISYCPIMEELRILEDHRTTDIPRLSSLEIEYCPK 870 (876)
Q Consensus 828 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~lp~L~~L~i~~c~~ 870 (876)
.+++|+.|++++|...... .. .....+|+|+.|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~-~~--~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLG-MH--HVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HCTTCCEEEEESCCSSHHH-HH--HHHHHCTTCCEEEEESCSC
T ss_pred hchhccEeeccCCCCcHHH-HH--HHHhcCCCcCEEECcCCCC
Confidence 3789999999999853221 10 0124589999999999964
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=7.6e-16 Score=161.21 Aligned_cols=148 Identities=26% Similarity=0.320 Sum_probs=95.2
Q ss_pred CCCcccccccccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYM 591 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 591 (876)
.+..+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|......+..+.++++|++|++++|.+....
T Consensus 15 ~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 15 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 4445566776554 468888888888887765 6788888888888888443334446778888888888888765555
Q ss_pred CccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCcc
Q 042981 592 PIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEE 671 (876)
Q Consensus 592 p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 671 (876)
|..+.++++|++| +++.+.+..+. ...+..+++|+.|++++|.+.
T Consensus 93 ~~~~~~l~~L~~L----------~l~~n~l~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~-- 137 (276)
T 2z62_A 93 LGAFSGLSSLQKL----------VAVETNLASLE-----------------------NFPIGHLKTLKELNVAHNLIQ-- 137 (276)
T ss_dssp TTTTTTCTTCCEE----------ECTTSCCCCST-----------------------TCCCTTCTTCCEEECCSSCCC--
T ss_pred hhhhcCCccccEE----------ECCCCCccccC-----------------------chhcccCCCCCEEECcCCccc--
Confidence 5666667776666 22232222111 112445566666666655431
Q ss_pred ccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC
Q 042981 672 GRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE 724 (876)
Q Consensus 672 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 724 (876)
...+|.++..+++|++|+|++|.+.+
T Consensus 138 ---------------------------~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 138 ---------------------------SFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ---------------------------CCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ---------------------------eecCchhhccCCCCCEEECCCCCCCc
Confidence 01247778888888888888887754
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3.9e-16 Score=164.12 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=72.2
Q ss_pred ceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc
Q 042981 444 KVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN 523 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~ 523 (876)
+++.+.++.+.++.+|..+. ++++.|++.+|. ...+.+..|..+++|++|+| ++|.+..+|..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L---------~~n~l~~~~~~ 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENL------LYTFSLATLMPYTRLTQLNL---------DRAELTKLQVD 73 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEEC---------TTSCCCEEECC
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEEC---------CCCccCcccCC
Confidence 45555555555555554442 455666664443 22233334555566666666 44444444432
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
+.+++|++|+|++|.++.+|..+..+++|++|++++|. +..+| ..|..+++|++|++++|.+....+..+..+++|+
T Consensus 74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 45556666666666666666555556666666666553 33332 4455566666666665544322222233444444
Q ss_pred cc
Q 042981 603 TL 604 (876)
Q Consensus 603 ~L 604 (876)
.|
T Consensus 152 ~L 153 (290)
T 1p9a_G 152 KL 153 (290)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.1e-17 Score=182.34 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=145.1
Q ss_pred CCCCcccccCCCcceEEeeecCCCCCCCCchhh---hHHHhccCCcceEEecCccccccCCCCCcc-cccccc-------
Q 042981 455 GASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSI---LSELFSKLACFRALVIGQRNFIFDPYPNLI-REIPEN------- 523 (876)
Q Consensus 455 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i-~~lp~~------- 523 (876)
...++..+..+++|++|++.+|. +.... +...+..+++|++|+|++|.+ +.+ ..+|..
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~------~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFT------GRVKDEIPEALRLLLQA 89 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCT------TSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEECCCCC-----CCHHHHHHHHHHHHhCCCccEEeCccccc------CccccchhHHHHHHHHH
Confidence 34456677788889999997664 22221 233467888999999944321 111 123433
Q ss_pred cccCcccCeeeccCccccc-----cchhhccCCcccEEeecCCCCCcc----ccccccCc---------CCCceEecCCC
Q 042981 524 VRKLIHLKYLNLSELCIER-----LPKTLCELYNLQKLDIRWCEDLRE----LPAGIGKL---------KKMRSLLNGGT 585 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~L---------~~L~~L~l~~~ 585 (876)
+..+++|++|+|++|.++. +|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3678899999999998875 788888899999999998854322 33334444 88999999988
Q ss_pred CCC-ccCC---ccCCCCCCCCccCceeecCccCCCcccccc----------ccccCCCCCCeeeeCcCCCCCcc----hh
Q 042981 586 PLL-KYMP---IGISKLTSLRTLEKFAMGGGVDDISTCRLE----------SLKNLQLLRECGIEGLSNVSHLD----ED 647 (876)
Q Consensus 586 ~~~-~~~p---~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~----------~L~~L~~L~~L~l~~~~~~~~~~----~~ 647 (876)
.+. ..+| ..+..+++|++| +++.+.+. .+..+++|+.|+++++ .+. ..
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L----------~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n----~l~~~g~~~ 235 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTV----------KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN----TFTHLGSSA 235 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEE----------ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS----CCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEE----------ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC----CCCcHHHHH
Confidence 765 3333 344556666666 33333333 4455666666666652 222 33
Q ss_pred hhccCcccccCCceEEEeccCCccccchHHHHHhhC--CCCCCccEEEEeecCCCC-----CCchh-hcccCCcEEEEec
Q 042981 648 ERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEAL--QPPLNVKELGIVSYGGNI-----FPKWL-TSLTNLRDLRLKS 719 (876)
Q Consensus 648 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----lp~~l-~~l~~L~~L~L~~ 719 (876)
.+..+..+++|+.|+|++|.+.... ...+...+ ..+++|+.|++++|.... +|.++ ..+++|++|+|++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~---~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARG---AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHH---HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHccCCCcCEEECCCCCCchhh---HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 3445566666777777666553111 11122333 225566666666665554 55555 3456666666666
Q ss_pred CCCCC
Q 042981 720 CVICE 724 (876)
Q Consensus 720 ~~~~~ 724 (876)
|.+.+
T Consensus 313 N~l~~ 317 (386)
T 2ca6_A 313 NRFSE 317 (386)
T ss_dssp SBSCT
T ss_pred CcCCc
Confidence 66554
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=5.7e-16 Score=162.15 Aligned_cols=216 Identities=21% Similarity=0.193 Sum_probs=132.0
Q ss_pred CCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc-ccccCcccCe
Q 042981 454 GGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE-NVRKLIHLKY 532 (876)
Q Consensus 454 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~~L~~Lr~ 532 (876)
++..+|..+. ++|++|++.++. ...+....|..+++|++|++ ++|.+..++. .+.++++|++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDL---------SRCEIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC------CCEECTTTTTTCTTCSEEEC---------TTCCCCEECTTTTTTCTTCCE
T ss_pred CccccCCCCC--CCccEEECCCCc------ccccCHhHhccccCCcEEEC---------CCCcCCccCHHHccCCcCCCE
Confidence 3444555443 568888886665 23344445777888888888 6666666653 5778888888
Q ss_pred eeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCc-cCCccCCCCCCCCccCceeec
Q 042981 533 LNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLK-YMPIGISKLTSLRTLEKFAMG 610 (876)
Q Consensus 533 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~ 610 (876)
|+|++|.++.++ ..+.++++|++|++++|......+..+..+++|++|++++|.+.. .+|..++++++|++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L------ 154 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------ 154 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE------
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE------
Confidence 888888888666 467888888888888874433334467788888888888886644 256666666666666
Q ss_pred CccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCC----ceEEEeccCCccccchHHHHHhhCCCC
Q 042981 611 GGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLL----RLSLEFDEEGEEGRRKNQQLLEALQPP 686 (876)
Q Consensus 611 ~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~l~~~ 686 (876)
+++.+.+..+ .+..+..+.+|+ .|++++|.+.... ......
T Consensus 155 ----~Ls~N~l~~~-----------------------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--------~~~~~~ 199 (276)
T 2z62_A 155 ----DLSSNKIQSI-----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--------PGAFKE 199 (276)
T ss_dssp ----ECCSSCCCEE-----------------------CGGGGHHHHTCTTCCEEEECCSSCCCEEC--------TTSSCS
T ss_pred ----ECCCCCCCcC-----------------------CHHHhhhhhhccccceeeecCCCcccccC--------ccccCC
Confidence 3333322221 111223333333 4555555542111 011122
Q ss_pred CCccEEEEeecCCCCCCch-hhcccCCcEEEEecCCCCCCCC
Q 042981 687 LNVKELGIVSYGGNIFPKW-LTSLTNLRDLRLKSCVICEHFP 727 (876)
Q Consensus 687 ~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~lp 727 (876)
.+|+.|+++++....+|.. +..+++|+.|+|++|++....+
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 3566666666666666654 3567778888888777654433
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.8e-15 Score=157.74 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=30.6
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 587 (876)
+..+++|++|+|++|.++.++ .++++++|++|++++|......|..+.++++|++|++++|.+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 444555555555555555443 455555555555555532222222345555555555555544
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=5.8e-17 Score=175.20 Aligned_cols=254 Identities=16% Similarity=0.176 Sum_probs=145.2
Q ss_pred cceEEeeecCCCCCCCCchhhhHHHhccC--CcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccc--
Q 042981 467 RLRTLLIYFQSPSNPSLNSSILSELFSKL--ACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIER-- 542 (876)
Q Consensus 467 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~-- 542 (876)
.++.+++.++. +. +..+..+ +.++.|++ .++.+...+..+..+++|++|+|++|.++.
T Consensus 48 ~~~~l~l~~~~-----~~----~~~~~~~~~~~l~~L~l---------~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 48 LWQTLDLTGKN-----LH----PDVTGRLLSQGVIAFRC---------PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp TSSEEECTTCB-----CC----HHHHHHHHHTTCSEEEC---------TTCEECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred hheeecccccc-----CC----HHHHHhhhhccceEEEc---------CCccccccchhhccCCCCCEEEccCCCcCHHH
Confidence 36677775443 12 2234444 67777777 555555555556667777888887777662
Q ss_pred cchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCC-CCc-cCCccCCCCCCCCccCceeecCccCCCcccc
Q 042981 543 LPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTP-LLK-YMPIGISKLTSLRTLEKFAMGGGVDDISTCR 620 (876)
Q Consensus 543 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~ 620 (876)
+|..+..+++|++|++++|......|..+.++++|++|++++|. +.. .+|..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-------------------------- 163 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-------------------------- 163 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH--------------------------
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH--------------------------
Confidence 66677777777777777775444566677777777777777772 221 12222
Q ss_pred ccccccCCCCCCeeeeCcCCCCCcchhhhccCcccc-cCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCC
Q 042981 621 LESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMK-NLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGG 699 (876)
Q Consensus 621 l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 699 (876)
+..+++|+.|+++++..+.. ...+..+..++ +|+.|++++|.. ..
T Consensus 164 ---~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~-----------------------------~~ 209 (336)
T 2ast_B 164 ---LSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRK-----------------------------NL 209 (336)
T ss_dssp ---HHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGG-----------------------------GS
T ss_pred ---HhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcc-----------------------------cC
Confidence 22333444444444211111 11222344455 566666655521 11
Q ss_pred --CCCCchhhcccCCcEEEEecCC-CCC-CCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCccccc
Q 042981 700 --NIFPKWLTSLTNLRDLRLKSCV-ICE-HFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIA 774 (876)
Q Consensus 700 --~~lp~~l~~l~~L~~L~L~~~~-~~~-~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 774 (876)
..+|..+..+++|++|+|++|. +.+ .++.++.++ |+.|++++|..+ .+..+. .+..
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-----------------~l~~ 270 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI--IPETLL-----------------ELGE 270 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC--CGGGGG-----------------GGGG
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC--CHHHHH-----------------HHhc
Confidence 2235556678888888888888 433 455677778 888888877522 111111 1345
Q ss_pred CcccceeeccccccccccccccccccccCcc-cccceeeeccCccCCCCCCCCC
Q 042981 775 FPKLKSLHIGAMEELEEWNYRITRKENISIM-PRLSSLTIWYCPRLRVLPDYLF 827 (876)
Q Consensus 775 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 827 (876)
+++|+.|++++| +... .+..+ .+|+.|++++|......|..+.
T Consensus 271 ~~~L~~L~l~~~--i~~~--------~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 271 IPTLKTLQVFGI--VPDG--------TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCCEEECTTS--SCTT--------CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCEEeccCc--cCHH--------HHHHHHhhCcceEEecccCccccCCccc
Confidence 788888888776 2221 12233 3467777877765556665543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.3e-15 Score=161.80 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=31.5
Q ss_pred CccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCC
Q 042981 688 NVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLY 743 (876)
Q Consensus 688 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~ 743 (876)
+|+.|++.++....+|. +..+++|++|+|++|.+.+. +++..++ |+.|++++|+
T Consensus 174 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC-GGGTTCTTCCEEEEEEEE
T ss_pred CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc-ccccCCCCCCEEEccCCe
Confidence 34444444444344443 55677777777777776543 3466677 7777777654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=2.5e-15 Score=158.01 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=90.3
Q ss_pred ccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccc
Q 042981 462 IHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCI 540 (876)
Q Consensus 462 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i 540 (876)
+.++++++++++.++. ...++..+ .+.+++|+| ++|.+..++ ..+.++++|++|+|++|.|
T Consensus 6 ~~~l~~l~~l~~~~~~------l~~ip~~~---~~~l~~L~L---------~~N~l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN------LTALPPDL---PKDTTILHL---------SENLLYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp EECSTTCCEEECTTSC------CSSCCSCC---CTTCCEEEC---------TTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred ccccCCccEEECCCCC------CCcCCCCC---CCCCCEEEc---------CCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence 5667788888886654 22333322 257888888 666666654 5678888888888888888
Q ss_pred cccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 541 ERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
+.+|.. +.+++|++|++++| .+..+|..+..+++|++|++++|.+....|..++++++|++|
T Consensus 68 ~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 68 TKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp CEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 887764 78888888888888 567788888888888888888887754444556777777776
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=8.2e-15 Score=149.68 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=46.0
Q ss_pred ccccccccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCC-CCC
Q 042981 517 IREIPENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGG-TPL 587 (876)
Q Consensus 517 i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~~ 587 (876)
+..+|. +. .+|++|+|++|.++.+|. .+.++++|++|++++|..+..+|. .+.++++|++|++++ |.+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 455665 43 367788888887777766 577777788888877743555543 567777777777776 544
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.7e-15 Score=156.35 Aligned_cols=193 Identities=21% Similarity=0.236 Sum_probs=114.8
Q ss_pred eEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc-
Q 042981 445 VRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN- 523 (876)
Q Consensus 445 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~- 523 (876)
.+.++++.+.+..+|..+. ++|+.|++.++. ...++...|..+++|++|++ ++|.+..+|..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l---------~~n~l~~i~~~~ 80 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYL---------NDNKLQTLPAGI 80 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEEC---------CSSCCSCCCTTT
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEEC---------CCCccCeeChhh
Confidence 4556677777766665543 567777776654 23334445677777888887 66666666654
Q ss_pred cccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
+.++++|++|+|++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|.+....+..++.+++|+
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 3677778888888777777765 356777788888877744444444567777888888877765433333356666766
Q ss_pred ccCceeecCccCCCcccccc-----ccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccC
Q 042981 603 TLEKFAMGGGVDDISTCRLE-----SLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEE 668 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l~-----~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 668 (876)
.| +++.+.+. .+..+++|+.|++++. .+.......+..+++|+.|++++|.+
T Consensus 161 ~L----------~L~~n~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 EL----------RLYNNQLKRVPEGAFDKLTELKTLKLDNN----QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EE----------ECCSSCCSCCCTTTTTTCTTCCEEECCSS----CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ee----------EecCCcCcEeChhHhccCCCcCEEECCCC----cCCcCCHHHhccccCCCEEEecCCCe
Confidence 66 22233222 2334445555555542 11111222344555666666665543
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=8.7e-15 Score=152.45 Aligned_cols=174 Identities=24% Similarity=0.275 Sum_probs=91.3
Q ss_pred CcceEEecCccccccCCCCCccccccc-ccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCcccc-cccc
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREIPE-NVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELP-AGIG 572 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~ 572 (876)
+.|+.|+| ++|.+..+|. .+.++++|++|+|++|.++.+|.. +.++++|++|++++|. +..+| ..+.
T Consensus 37 ~~l~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDL---------QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFD 106 (270)
T ss_dssp TTCSEEEC---------CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCEEEC---------cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcc
Confidence 34556666 4444455443 455566666666666666655543 3556666666666553 33333 3345
Q ss_pred CcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccC
Q 042981 573 KLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGL 652 (876)
Q Consensus 573 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 652 (876)
.+++|++|++++|.+....|..++.+++|++| +++.+.+..+ ....+
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------~Ls~n~l~~~-----------------------~~~~~ 153 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL----------SLGYNELQSL-----------------------PKGVF 153 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE----------ECCSSCCCCC-----------------------CTTTT
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEE----------ECCCCcCCcc-----------------------CHhHc
Confidence 56666666666655433333334444444444 2222211111 11123
Q ss_pred cccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCCCCC-CCC
Q 042981 653 HNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICEHFP-PLG 730 (876)
Q Consensus 653 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~lp-~l~ 730 (876)
..+++|+.|++++| ....+|. .+..+++|++|+|++|.+.+..+ .++
T Consensus 154 ~~l~~L~~L~L~~n-------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 154 DKLTSLKELRLYNN-------------------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp TTCTTCCEEECCSS-------------------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cCCcccceeEecCC-------------------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 34445555555444 3344443 45677788888888887765333 266
Q ss_pred ccc-CceEeecCCC
Q 042981 731 KLP-LEKLTLYGLY 743 (876)
Q Consensus 731 ~Lp-L~~L~L~~~~ 743 (876)
.++ |+.|+|++|+
T Consensus 203 ~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 203 SLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEecCCC
Confidence 677 8888887765
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.6e-14 Score=154.86 Aligned_cols=102 Identities=19% Similarity=0.104 Sum_probs=67.2
Q ss_pred cCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeecccccc
Q 042981 710 TNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEE 788 (876)
Q Consensus 710 ~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 788 (876)
..|+.|+|++|.+.+..+.....+ |+.|.+.++..+..++... +..+++|+.|+++++ .
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-------------------f~~l~~L~~LdLs~N-~ 213 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-------------------FHGASGPVILDISRT-R 213 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-------------------TTTEECCSEEECTTS-C
T ss_pred hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHH-------------------hccCcccchhhcCCC-C
Confidence 467888888888765333333445 7888887665555443321 336788888887776 4
Q ss_pred ccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccEEEEecC
Q 042981 789 LEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQKLSISYC 840 (876)
Q Consensus 789 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 840 (876)
++.+.. ..+.+|+.|.+.+|..++.+|. +..+++|+.+++.++
T Consensus 214 l~~lp~--------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 214 IHSLPS--------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCS--------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCccCh--------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 544321 2467777777777777888884 677888888888653
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=9.3e-15 Score=155.23 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=98.7
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
+++++|++..+.+..++ .+..+++|++|++.+|. ...+.. +..+++|++|++ ++|.+..+|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~------i~~~~~--~~~l~~L~~L~L---------~~n~l~~~~- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ------ITDLAP--LKNLTKITELEL---------SGNPLKNVS- 101 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCCSCCEEEC---------CSCCCSCCG-
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc------CCCChh--HccCCCCCEEEc---------cCCcCCCch-
Confidence 46778888887777654 57778888888887665 222222 677888888888 555566654
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
.+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|++++|.+. .++. +..+++|+
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLT 176 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCC
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCC
Confidence 57778888888888888887765 788888888888887 4555555 778888888888888653 3443 66666666
Q ss_pred cc
Q 042981 603 TL 604 (876)
Q Consensus 603 ~L 604 (876)
.|
T Consensus 177 ~L 178 (308)
T 1h6u_A 177 TL 178 (308)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.6e-14 Score=156.66 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=136.4
Q ss_pred CCCcccccccccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccc-cccCcCCCce-EecCCCCCCc
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRS-LLNGGTPLLK 589 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~-L~l~~~~~~~ 589 (876)
+++.++++|..+. .+|++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|.+ +.+.+|.+..
T Consensus 17 ~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp ESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred cCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 4555666776552 467777777777777775 467777777777777755555554 3566766665 3344454544
Q ss_pred cCCccCCCCCCCCccCceeecCccCCCccccccccccC-----CCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEE
Q 042981 590 YMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNL-----QLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLE 664 (876)
Q Consensus 590 ~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L-----~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 664 (876)
..|..+..+++|++|. ++.+.+..+... .++..|.+.+...+..+. ...+..+
T Consensus 95 l~~~~f~~l~~L~~L~----------l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~---~~~f~~~--------- 152 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLL----------ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVGL--------- 152 (350)
T ss_dssp ECTTSBCCCTTCCEEE----------EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---TTSSTTS---------
T ss_pred cCchhhhhcccccccc----------ccccccccCCchhhcccchhhhhhhcccccccccc---ccchhhc---------
Confidence 4455566666666662 223333222211 112222222211111110 0011111
Q ss_pred eccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCC--CCccc-CceEeecC
Q 042981 665 FDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPP--LGKLP-LEKLTLYG 741 (876)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~L~L~~ 741 (876)
...++.|++.++....+|.......+|+.|++++|...+.+|. ++.++ |+.|+|++
T Consensus 153 ---------------------~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 153 ---------------------SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp ---------------------BSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred ---------------------chhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 1245566666666677777777778999999998776677765 78899 99999999
Q ss_pred CCCceEeCcccccCCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccC
Q 042981 742 LYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYC 816 (876)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c 816 (876)
|... .++. ..|.+|+.|.+.++.+++.. | .+..+++|+.+++.++
T Consensus 212 N~l~-~lp~----------------------~~~~~L~~L~~l~~~~l~~l------P-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 212 TRIH-SLPS----------------------YGLENLKKLRARSTYNLKKL------P-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SCCC-CCCS----------------------SSCTTCCEEECTTCTTCCCC------C-CTTTCCSCCEEECSCH
T ss_pred CCcC-ccCh----------------------hhhccchHhhhccCCCcCcC------C-CchhCcChhhCcCCCC
Confidence 8633 2211 24677777777777666654 2 4668999999999763
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=6e-15 Score=150.67 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=58.2
Q ss_pred cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCc-cccccc-ccccCcccCeeeccC-cccccc
Q 042981 467 RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNL-IREIPE-NVRKLIHLKYLNLSE-LCIERL 543 (876)
Q Consensus 467 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-i~~lp~-~i~~L~~Lr~L~Ls~-~~i~~l 543 (876)
+|+.|++.++. ...+++..|..+++|++|++ ++|. +..+|. .+.++++|++|+|++ |.++.+
T Consensus 32 ~l~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l---------~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 32 STQTLKLIETH------LRTIPSHAFSNLPNISRIYV---------SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp TCCEEEEESCC------CSEECTTTTTTCTTCCEEEE---------ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cccEEEEeCCc------ceEECHHHccCCCCCcEEeC---------CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 45555554443 22233333455555555555 4443 444443 345555555555555 555555
Q ss_pred ch-hhccCCcccEEeecCCCCCccccccccCcCCCc---eEecCCC-CCCccCCccCCCCCCCC-cc
Q 042981 544 PK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMR---SLLNGGT-PLLKYMPIGISKLTSLR-TL 604 (876)
Q Consensus 544 p~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~---~L~l~~~-~~~~~~p~~i~~l~~L~-~L 604 (876)
|. .+.++++|++|++++| .+..+|. +..+++|+ +|++++| .+....+..+.++++|+ +|
T Consensus 97 ~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp CTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred CHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 43 3455555555555555 2334554 55555555 5555555 33222222344444444 44
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=152.52 Aligned_cols=229 Identities=17% Similarity=0.092 Sum_probs=146.0
Q ss_pred CCcceEEeeecCCCCCCCCchhhhHHH--hccCCcceEEecCccccccCCCCCccc-cccccc--ccCcccCeeeccCcc
Q 042981 465 LNRLRTLLIYFQSPSNPSLNSSILSEL--FSKLACFRALVIGQRNFIFDPYPNLIR-EIPENV--RKLIHLKYLNLSELC 539 (876)
Q Consensus 465 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~--~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~lp~~i--~~L~~Lr~L~Ls~~~ 539 (876)
...++.+.+.... +.......+ +..+++|+.|++ ++|.+. ..|..+ ..+++|++|+|++|.
T Consensus 63 ~~~l~~l~l~~~~-----~~~~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 63 ALRVRRLTVGAAQ-----VPAQLLVGALRVLAYSRLKELTL---------EDLKITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp SCCCCEEEECSCC-----CBHHHHHHHHHHHHHSCCCEEEE---------ESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred hcceeEEEEeCCc-----CCHHHHHHHHHhcccCceeEEEe---------eCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence 3456777775543 222212211 234566999999 555554 456666 889999999999999
Q ss_pred ccc-cc----hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCcc--CC--ccCCCCCCCCccCceeec
Q 042981 540 IER-LP----KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKY--MP--IGISKLTSLRTLEKFAMG 610 (876)
Q Consensus 540 i~~-lp----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~ 610 (876)
++. .| ..+..+++|++|+|++|......|..+..+++|++|++++|.+.+. ++ ..++.+++|++|
T Consensus 129 i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L------ 202 (310)
T 4glp_A 129 WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL------ 202 (310)
T ss_dssp CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC------
T ss_pred ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE------
Confidence 884 22 3456799999999999966556667889999999999999976542 22 233667777777
Q ss_pred CccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCcc
Q 042981 611 GGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVK 690 (876)
Q Consensus 611 ~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~ 690 (876)
+++.+.+..++ ......+..+++|+.|+|++|.+....+. .+..+..+++|+
T Consensus 203 ----~Ls~N~l~~l~--------------------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~~L~ 254 (310)
T 4glp_A 203 ----ALRNTGMETPT--------------------GVCAALAAAGVQPHSLDLSHNSLRATVNP----SAPRCMWSSALN 254 (310)
T ss_dssp ----BCCSSCCCCHH--------------------HHHHHHHHHTCCCSSEECTTSCCCCCCCS----CCSSCCCCTTCC
T ss_pred ----ECCCCCCCchH--------------------HHHHHHHhcCCCCCEEECCCCCCCccchh----hHHhccCcCcCC
Confidence 44444443221 11111123445555555555554321100 011122235677
Q ss_pred EEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCC
Q 042981 691 ELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYG 744 (876)
Q Consensus 691 ~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~ 744 (876)
.|++++|....+|.++. ++|+.|+|++|++.+ +|.+..+| |+.|+|++|+.
T Consensus 255 ~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 255 SLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTT
T ss_pred EEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCC
Confidence 77777777677777764 799999999998864 35577888 99999988763
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.7e-14 Score=150.35 Aligned_cols=125 Identities=22% Similarity=0.217 Sum_probs=76.7
Q ss_pred ccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCcccc
Q 042981 462 IHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIE 541 (876)
Q Consensus 462 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~ 541 (876)
...+++|+.|.+.++.. .. ++. +..+++|++|++ ++|.+..++ .++.+++|++|+|++|.++
T Consensus 37 ~~~l~~L~~L~l~~~~i------~~-~~~-l~~l~~L~~L~l---------~~n~l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI------KS-VQG-IQYLPNVRYLAL---------GGNKLHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTTCCEEECTTSCC------CC-CTT-GGGCTTCCEEEC---------TTSCCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred cccccceeeeeeCCCCc------cc-ccc-cccCCCCcEEEC---------CCCCCCCch-hhcCCCCCCEEECCCCccC
Confidence 34566677777755541 11 111 566777777777 555555543 5677777777777777777
Q ss_pred ccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 542 RLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 542 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
.+|.. ++++++|++|++++|......|..+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 66654 5777777777777774333333446777777777777776543333334555555555
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=4.1e-16 Score=171.91 Aligned_cols=233 Identities=19% Similarity=0.160 Sum_probs=166.8
Q ss_pred HHhccCCcceEEecCccccccCCCCCcccc-----cccccccCcccCeeeccCcccc----ccchhh-------ccCCcc
Q 042981 490 ELFSKLACFRALVIGQRNFIFDPYPNLIRE-----IPENVRKLIHLKYLNLSELCIE----RLPKTL-------CELYNL 553 (876)
Q Consensus 490 ~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~-----lp~~i~~L~~Lr~L~Ls~~~i~----~lp~~i-------~~L~~L 553 (876)
..+..+++|++|+| ++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|
T Consensus 26 ~~l~~~~~L~~L~L---------~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 26 AVLLEDDSVKEIVL---------SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HHHHHCSCCCEEEC---------TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHhcCCCccEEEC---------CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 34778899999999 5555443 4556778999999999998655 445544 789999
Q ss_pred cEEeecCCCCCc----cccccccCcCCCceEecCCCCCCccCC----ccCCCC---------CCCCccCceeecCccCCC
Q 042981 554 QKLDIRWCEDLR----ELPAGIGKLKKMRSLLNGGTPLLKYMP----IGISKL---------TSLRTLEKFAMGGGVDDI 616 (876)
Q Consensus 554 ~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~~~~~~p----~~i~~l---------~~L~~L~~~~~~~~~~~l 616 (876)
++|+|++|.... .+|..+.++++|++|++++|.+....+ ..+..+ ++|++| ++
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L----------~L 166 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI----------IC 166 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE----------EC
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE----------EC
Confidence 999999996544 378889999999999999998743333 223333 788888 33
Q ss_pred cccccc---------ccccCCCCCCeeeeCcCCCC-CcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCC
Q 042981 617 STCRLE---------SLKNLQLLRECGIEGLSNVS-HLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPP 686 (876)
Q Consensus 617 s~~~l~---------~L~~L~~L~~L~l~~~~~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~ 686 (876)
+.+.+. .+..+++|+.|+++++.-.. ......+..+..+++|+.|+|++|.+.. .....+...+...
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---LGSSALAIALKSW 243 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---HHHHHHHHHGGGC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---HHHHHHHHHHccC
Confidence 344442 45578899999998842210 0001233367889999999999997631 1123445567778
Q ss_pred CCccEEEEeecCCCC-----CCchhh--cccCCcEEEEecCCCCC----CCCC-C-Cccc-CceEeecCCCC
Q 042981 687 LNVKELGIVSYGGNI-----FPKWLT--SLTNLRDLRLKSCVICE----HFPP-L-GKLP-LEKLTLYGLYG 744 (876)
Q Consensus 687 ~~L~~L~l~~~~~~~-----lp~~l~--~l~~L~~L~L~~~~~~~----~lp~-l-~~Lp-L~~L~L~~~~~ 744 (876)
++|+.|++++|.... +|.++. .+++|++|+|++|.+.. .+|. + +.+| |+.|++++|..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 899999999988654 256664 38999999999999876 3443 3 4578 99999998864
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=3.4e-15 Score=161.27 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=99.2
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccc-ccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIR-EIP 521 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~-~lp 521 (876)
..++.+.+..+.+...+..+..+++|++|++.++. +.....+..+..+++|++|+| ++|.+. ..|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~~~~L~~L~L---------~~~~l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSL---------EGLRLSDPIV 135 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEEC---------TTCBCCHHHH
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhhCCCCCEEeC---------cCcccCHHHH
Confidence 45667777777666555556678888888886553 233335556788888888888 555544 456
Q ss_pred cccccCcccCeeeccCc-ccc--ccchhhccCCcccEEeecCCCCCcc--ccccccCcC-CCceEecCCCC--CC-ccCC
Q 042981 522 ENVRKLIHLKYLNLSEL-CIE--RLPKTLCELYNLQKLDIRWCEDLRE--LPAGIGKLK-KMRSLLNGGTP--LL-KYMP 592 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~-~i~--~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~-~L~~L~l~~~~--~~-~~~p 592 (876)
..++.+++|++|+|++| .++ .+|..+.++++|++|++++|..+.. +|..+..++ +|++|++++|. +. ..+|
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 67777888888888888 566 4677788888888888888833332 566677888 88888888873 22 2333
Q ss_pred ccCCCCCCCCcc
Q 042981 593 IGISKLTSLRTL 604 (876)
Q Consensus 593 ~~i~~l~~L~~L 604 (876)
..++++++|++|
T Consensus 216 ~~~~~~~~L~~L 227 (336)
T 2ast_B 216 TLVRRCPNLVHL 227 (336)
T ss_dssp HHHHHCTTCSEE
T ss_pred HHHhhCCCCCEE
Confidence 333444444444
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=151.20 Aligned_cols=144 Identities=16% Similarity=-0.009 Sum_probs=97.9
Q ss_pred CceEEEEeeecCCCCC-cccc--cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 443 DKVRHLGLNFEGGASF-PMSI--HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~-~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.++++|+++.|.+... +..+ ..+++|++|++.+|.... .........+..+++|++|+| ++|.+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~~~~~~~~~~~~L~~L~L---------s~n~l~~ 159 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSWLAELQQWLKPGLKVLSI---------AQAHSPA 159 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSSHHHHHTTBCSCCCEEEE---------ECCSSCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc--hhhhhHHHHhhhccCCCEEEe---------eCCCcch
Confidence 3478888888887644 5555 778888888887776221 111112223457888888888 5666665
Q ss_pred cc-cccccCcccCeeeccCccccc---cchh--hccCCcccEEeecCCCCCcccccc----ccCcCCCceEecCCCCCCc
Q 042981 520 IP-ENVRKLIHLKYLNLSELCIER---LPKT--LCELYNLQKLDIRWCEDLRELPAG----IGKLKKMRSLLNGGTPLLK 589 (876)
Q Consensus 520 lp-~~i~~L~~Lr~L~Ls~~~i~~---lp~~--i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~ 589 (876)
+| ..++.+++|++|+|++|.+.. +|.. ++++++|++|+|++| .+..+|.. +..+++|++|++++|.+.+
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 54 567888888888888888653 4332 467888888888888 45555542 4677888888888887766
Q ss_pred cCCccCCCC
Q 042981 590 YMPIGISKL 598 (876)
Q Consensus 590 ~~p~~i~~l 598 (876)
..|..++.+
T Consensus 239 ~~p~~~~~~ 247 (310)
T 4glp_A 239 TVNPSAPRC 247 (310)
T ss_dssp CCCSCCSSC
T ss_pred cchhhHHhc
Confidence 657666554
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.1e-13 Score=142.30 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=67.2
Q ss_pred cceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcC
Q 042981 497 CFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLK 575 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 575 (876)
..+.+++ +++.+..+|..+. .+|++|+|++|.++.++. .+.++++|++|+|++|......|..+..++
T Consensus 15 ~~~~l~~---------~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDC---------QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEEC---------TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCeEEec---------CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 4566777 6666777776665 578888888888776654 577788888888888754444455577788
Q ss_pred CCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 576 KMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 576 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
+|++|++++|.+....+..++.+++|++|
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEE
Confidence 88888888886654444445566666665
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=1.1e-13 Score=142.49 Aligned_cols=146 Identities=22% Similarity=0.324 Sum_probs=62.2
Q ss_pred CceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 443 DKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
..++.|+++.|.+..+ +..+.++++|++|++.+|. ...+++..|..+++|++|+| ++|.+..+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L---------~~n~l~~~~ 99 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGL---------ANNQLASLP 99 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEEC---------TTSCCCCCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEEC---------CCCcccccC
Confidence 3444455544444433 2234444455555544333 11222233444444555555 333333333
Q ss_pred -cccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCCccCCccCCCC
Q 042981 522 -ENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLLKYMPIGISKL 598 (876)
Q Consensus 522 -~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 598 (876)
..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|. .+..+++|++|++++|.+....|..+..+
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 2234444555555555544444433 344445555555444 2223322 34444455555554444433222233444
Q ss_pred CCCCcc
Q 042981 599 TSLRTL 604 (876)
Q Consensus 599 ~~L~~L 604 (876)
++|+.|
T Consensus 179 ~~L~~L 184 (251)
T 3m19_A 179 GKLQTI 184 (251)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 444443
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=5.8e-15 Score=160.96 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=61.5
Q ss_pred eeecCCCCCcccc-cCCCcceEEeeecCCCCCCCCchhhhH----HHhccCC-cceEEecCccccccCCCCCccccc-cc
Q 042981 450 LNFEGGASFPMSI-HGLNRLRTLLIYFQSPSNPSLNSSILS----ELFSKLA-CFRALVIGQRNFIFDPYPNLIREI-PE 522 (876)
Q Consensus 450 l~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~~~~~~~i~~l-p~ 522 (876)
++.+.+....+.+ ...++|++|++.+|. ...... ..+..++ +|++|+| ++|.+... +.
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~L---------s~N~l~~~~~~ 69 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNL---------SGNSLGFKNSD 69 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEEC---------CSSCGGGSCHH
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEEC---------cCCCCCHHHHH
Confidence 3444444332222 333346777665554 122121 4455666 6777777 44444432 33
Q ss_pred ccccC-----cccCeeeccCccccccch-h----hccC-CcccEEeecCCCCCccccccc----cC-cCCCceEecCCCC
Q 042981 523 NVRKL-----IHLKYLNLSELCIERLPK-T----LCEL-YNLQKLDIRWCEDLRELPAGI----GK-LKKMRSLLNGGTP 586 (876)
Q Consensus 523 ~i~~L-----~~Lr~L~Ls~~~i~~lp~-~----i~~L-~~L~~L~L~~~~~l~~lp~~i----~~-L~~L~~L~l~~~~ 586 (876)
.+..+ ++|++|+|++|.++..+. . +..+ ++|++|+|++|......+..+ .. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 34433 667777777776663332 2 3333 667777777664322222222 22 2466777776665
Q ss_pred CC
Q 042981 587 LL 588 (876)
Q Consensus 587 ~~ 588 (876)
+.
T Consensus 150 l~ 151 (362)
T 3goz_A 150 LG 151 (362)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=8.7e-14 Score=146.32 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=35.4
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 587 (876)
++|.+..++ .+..+++|++|+|++|.++.++. +.++++|++|++++| .+..+|. +..+++|++|++++|.+
T Consensus 54 ~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 54 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCC
T ss_pred cCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcC
Confidence 444444443 24455555555555555555544 555555555555555 2333333 55555555555555533
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.8e-13 Score=156.02 Aligned_cols=188 Identities=21% Similarity=0.168 Sum_probs=122.6
Q ss_pred ceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc
Q 042981 444 KVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN 523 (876)
Q Consensus 444 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~ 523 (876)
+++.|+++.|.+..+|..+ .++|++|++.+|.. ..++ ..+++|++|+| ++|.+..+|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l------~~ip----~~l~~L~~L~L---------s~N~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL------ISLP----ELPASLEYLDA---------CDNRLSTLPE- 117 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC------SCCC----CCCTTCCEEEC---------CSSCCSCCCC-
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC------cccc----cccCCCCEEEc---------cCCCCCCcch-
Confidence 5777888888877776655 36788888876652 2222 34677888888 6666666776
Q ss_pred cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCc
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRT 603 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 603 (876)
+++ +|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++|.+.+ +|. ++ ++|+.
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 554 78888888888887777 5778888888877 4555766 56778888888886533 665 44 55555
Q ss_pred cCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhC
Q 042981 604 LEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEAL 683 (876)
Q Consensus 604 L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l 683 (876)
| +++.|.+..++. +.. +| .
T Consensus 185 L----------~Ls~N~L~~lp~-------------------------~~~--~L------------------------~ 203 (571)
T 3cvr_A 185 L----------DVSTNLLESLPA-------------------------VPV--RN------------------------H 203 (571)
T ss_dssp E----------ECCSSCCSSCCC-------------------------CC------------------------------
T ss_pred E----------ECcCCCCCchhh-------------------------HHH--hh------------------------h
Confidence 5 333333332221 000 11 0
Q ss_pred CCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCCCCC
Q 042981 684 QPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICEHFP 727 (876)
Q Consensus 684 ~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp 727 (876)
...+.|+.|++++|....+|.++..+++|+.|+|++|++.+.+|
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 01223466666666777889999999999999999999876443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.6e-13 Score=140.79 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=91.3
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
.+++.+.++.+.+..++ .+..+++|++|++.+|.. ..+.+ +..+++|++|++ ++|.+..+|.
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l------~~~~~--l~~l~~L~~L~l---------~~n~l~~~~~ 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL------TDIKP--LANLKNLGWLFL---------DENKVKDLSS 107 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC------CCCGG--GTTCTTCCEEEC---------CSSCCCCGGG
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCcc------CCCcc--cccCCCCCEEEC---------CCCcCCCChh
Confidence 45677777777776653 466777788887766652 22222 667777888887 5555555543
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
+..+++|++|+|++|.++.++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. ++. +..+++|+
T Consensus 108 -l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~ 181 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQ 181 (291)
T ss_dssp -GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred -hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccC
Confidence 777777888888877777764 4777777888888777 44445 457777778888877775533 332 55555555
Q ss_pred cc
Q 042981 603 TL 604 (876)
Q Consensus 603 ~L 604 (876)
.|
T Consensus 182 ~L 183 (291)
T 1h6t_A 182 NL 183 (291)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1e-13 Score=136.68 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=5.5
Q ss_pred cccCCcEEEEecCC
Q 042981 708 SLTNLRDLRLKSCV 721 (876)
Q Consensus 708 ~l~~L~~L~L~~~~ 721 (876)
.+++|+.|++++|+
T Consensus 179 ~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 DFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEEECBC-
T ss_pred cCCCCCEEEeeCcc
Confidence 33444444444443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=3.6e-13 Score=135.14 Aligned_cols=141 Identities=20% Similarity=0.178 Sum_probs=109.0
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc-ccccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI-PENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~ 525 (876)
.++...+.+..+|..+. ++|+.|++.+|. ...+++..|..+++|++|+| ++|.+..+ |..|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~L---------s~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDL---------SNNQISELAPDAFQ 77 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC------CCEECTTSSTTCTTCCEEEC---------CSSCCCEECTTTTT
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEEC---------CCCcCCCcCHHHhh
Confidence 45566667777776554 688999987765 33445556788899999999 66667665 67788
Q ss_pred cCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
++++|++|+|++|.|+.+|.. +.++++|++|+|++|......|..|..+++|++|++++|.+....+..+..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 899999999999999988875 5789999999999986555557778899999999999997765555567778888777
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2e-13 Score=157.56 Aligned_cols=161 Identities=21% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMP 592 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 592 (876)
++|.+..+| .+..|++|++|+|++|.++.+|. +.++++|+.|+|++| .+..+| .+..+++|++|++++|.+.. +
T Consensus 51 ~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l- 124 (605)
T 1m9s_A 51 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISD-I- 124 (605)
T ss_dssp TTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCC-C-
T ss_pred cCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCC-C-
Confidence 444444443 34455555555555555555444 555555555555555 333333 35555555555555553321 1
Q ss_pred ccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccc
Q 042981 593 IGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEG 672 (876)
Q Consensus 593 ~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 672 (876)
+.+..+++|+.| +++++.. ..+ ..+..+++|+.|+|++|.+....
T Consensus 125 ~~l~~l~~L~~L-----------------------------~Ls~N~l-~~l-----~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 125 NGLVHLPQLESL-----------------------------YLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp GGGGGCTTCSEE-----------------------------ECCSSCC-CCC-----GGGGSCTTCSEEECCSSCCCCCG
T ss_pred ccccCCCccCEE-----------------------------ECCCCcc-CCc-----hhhcccCCCCEEECcCCcCCCch
Confidence 123333333333 2222110 000 12334445555555555442111
Q ss_pred cchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCCcEEEEecCCCCC
Q 042981 673 RRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNLRDLRLKSCVICE 724 (876)
Q Consensus 673 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 724 (876)
.+..+++|+.|++++|....+| .+..+++|+.|+|++|.+.+
T Consensus 170 ---------~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 ---------PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---------GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ---------hhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 0333455555555555555543 46677788888888777654
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=7.1e-14 Score=152.31 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=146.8
Q ss_pred CCceEEEEeeecCCCCCc-----ccccCCC-cceEEeeecCCCCCCCCchhhhHHHhccC-CcceEEecCccccccCCCC
Q 042981 442 GDKVRHLGLNFEGGASFP-----MSIHGLN-RLRTLLIYFQSPSNPSLNSSILSELFSKL-ACFRALVIGQRNFIFDPYP 514 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~-----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~~~~ 514 (876)
+..+++|+++.|.+...+ ..+..++ +|++|++.+|.... .........+... ++|++|+| ++
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~L---------s~ 89 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF--KNSDELVQILAAIPANVTSLNL---------SG 89 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEEC---------CS
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH--HHHHHHHHHHhccCCCccEEEC---------cC
Confidence 566999999999987663 6778888 99999998775210 0111122223333 99999999 66
Q ss_pred Ccccccc-cc----cccC-cccCeeeccCccccccch-h----hcc-CCcccEEeecCCCCCc----cccccccCcC-CC
Q 042981 515 NLIREIP-EN----VRKL-IHLKYLNLSELCIERLPK-T----LCE-LYNLQKLDIRWCEDLR----ELPAGIGKLK-KM 577 (876)
Q Consensus 515 ~~i~~lp-~~----i~~L-~~Lr~L~Ls~~~i~~lp~-~----i~~-L~~L~~L~L~~~~~l~----~lp~~i~~L~-~L 577 (876)
|.+...+ .. +..+ ++|++|+|++|.++..+. . +.. .++|++|+|++|.... .++..+..++ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 6665433 32 4444 899999999999986654 3 334 3699999999995442 4555566676 99
Q ss_pred ceEecCCCCCCccCCccC----CCC-CCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccC
Q 042981 578 RSLLNGGTPLLKYMPIGI----SKL-TSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGL 652 (876)
Q Consensus 578 ~~L~l~~~~~~~~~p~~i----~~l-~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 652 (876)
++|++++|.+....+..+ ..+ ++|++| +++.+.+.. ......+..+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L----------~Ls~N~i~~-------------------~~~~~l~~~l 220 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSL----------DLSANLLGL-------------------KSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE----------ECTTSCGGG-------------------SCHHHHHHHH
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEE----------ECCCCCCCh-------------------hHHHHHHHHH
Confidence 999999997754443322 223 355555 333333332 0001122223
Q ss_pred cc-cccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCC--------CchhhcccCCcEEEEecCCCC
Q 042981 653 HN-MKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIF--------PKWLTSLTNLRDLRLKSCVIC 723 (876)
Q Consensus 653 ~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l--------p~~l~~l~~L~~L~L~~~~~~ 723 (876)
.. .++|+.|+|++|.+.... ...+...+...++|+.|++++|....+ +..+..+++|+.|++++|.+.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~---~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPS---LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCC---HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCCceEEECcCCCCCcHH---HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 23 236666666666553221 122334445556666666666653322 233456778888888888864
Q ss_pred C
Q 042981 724 E 724 (876)
Q Consensus 724 ~ 724 (876)
.
T Consensus 298 ~ 298 (362)
T 3goz_A 298 P 298 (362)
T ss_dssp G
T ss_pred C
Confidence 4
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=4.2e-13 Score=132.27 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=110.2
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc-c
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE-I 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~-l 520 (876)
.+++++++++.+.+..++ .+..+++|++|++.+|.. .. ++ .+..+++|++|++ ++|.+.. .
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~------~~-~~-~l~~l~~L~~L~l---------~~n~l~~~~ 104 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA------TN-YN-PISGLSNLERLRI---------MGKDVTSDK 104 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC------SC-CG-GGTTCTTCCEEEE---------ECTTCBGGG
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC------Cc-ch-hhhcCCCCCEEEe---------ECCccCccc
Confidence 356889999999888766 688899999999987741 11 22 3778899999999 5555554 5
Q ss_pred ccccccCcccCeeeccCccccc-cchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCC
Q 042981 521 PENVRKLIHLKYLNLSELCIER-LPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLT 599 (876)
Q Consensus 521 p~~i~~L~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 599 (876)
|..++.+++|++|+|++|.++. .|..++++++|++|++++|..+..+| .+..+++|++|++++|.+. .++ .+..++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~ 181 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFP 181 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCS
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCC
Confidence 7778889999999999999884 67788999999999999986577777 5889999999999998663 344 455666
Q ss_pred CCCcc
Q 042981 600 SLRTL 604 (876)
Q Consensus 600 ~L~~L 604 (876)
+|+.|
T Consensus 182 ~L~~L 186 (197)
T 4ezg_A 182 KLNQL 186 (197)
T ss_dssp SCCEE
T ss_pred CCCEE
Confidence 66666
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=3.4e-13 Score=159.86 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=90.8
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
...++++++..+.+...+..+....+|+.+.+.......+.+ ..++..|..++.|++|+| ++|.+..+|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~L---------s~n~l~~l~ 240 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDL---------SNLQIFNIS 240 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEEC---------TTSCCSCCC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEEC---------CCCCCCCCC
Confidence 456888999888777665555555556655554322111211 245666889999999999 777788899
Q ss_pred cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSL 601 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 601 (876)
..+.++++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|+|++|.+ +.+|..|+++++|
T Consensus 241 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L 318 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTC
T ss_pred hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCc
Confidence 88889999999999999999999999999999999999994 668899999999999999999966 6889889999999
Q ss_pred Ccc
Q 042981 602 RTL 604 (876)
Q Consensus 602 ~~L 604 (876)
++|
T Consensus 319 ~~L 321 (727)
T 4b8c_D 319 QFL 321 (727)
T ss_dssp CCE
T ss_pred cEE
Confidence 988
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=6.3e-13 Score=133.40 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=112.2
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc-ccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE-NVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~-~i~ 525 (876)
.++++.+.++.+|..+. +.++.|++.+|. +....+..+|..+++|++|+| ++|.+..++. .+.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L---------~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINF---------SNNKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEEC---------CSSCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEEC---------CCCcCCEECHHHhC
Confidence 67788888887776653 457889987765 222213345788999999999 7777777764 688
Q ss_pred cCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
++++|++|+|++|.++.+|. .+.++++|++|+|++|......|..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 99999999999999998776 48889999999999996555557888999999999999998877668888888888887
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=4.5e-13 Score=133.48 Aligned_cols=138 Identities=26% Similarity=0.327 Sum_probs=73.8
Q ss_pred EeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc-cccC
Q 042981 449 GLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN-VRKL 527 (876)
Q Consensus 449 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~-i~~L 527 (876)
....+.+..+|..+ .++|+.|++.++. ...++...|..+++|++|++ ++|.+..+|.. +..+
T Consensus 13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI--PAQTTYLDLETNS------LKSLPNGVFDELTSLTQLYL---------GGNKLQSLPNGVFNKL 75 (208)
T ss_dssp ECCSSCCSSCCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEEC---------CSSCCCCCCTTTTTTC
T ss_pred EecCCCccCCCCCC--CCCCcEEEcCCCc------cCcCChhhhcccccCcEEEC---------CCCccCccChhhcCCC
Confidence 33344444444333 3456666665544 12333344556666666666 44555555533 3566
Q ss_pred cccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 528 IHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 528 ~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+.++++|++|++++|.+.+..+..+..+++|+.|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 6666666666666655543 4566666666666663 333333 35566666666666665543333334555555555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=8.3e-13 Score=133.47 Aligned_cols=140 Identities=22% Similarity=0.287 Sum_probs=100.7
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc-cc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN-VR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~-i~ 525 (876)
.++.+.+.+..+|..+. ++|+.|++.+|. ...+.+..|..+++|++|+| ++|.+..+|.. +.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L---------~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYL---------GSNQLGALPVGVFD 85 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTT
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCc------cCccCHHHhhCccCCcEEEC---------CCCCCCCcChhhcc
Confidence 35555666666666543 788888887665 23334455778888888888 66677777744 57
Q ss_pred cCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 526 KLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
.+++|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 888888888888888877764 577888888888888 566788888888888888888886654333456667777766
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.2e-12 Score=149.41 Aligned_cols=179 Identities=17% Similarity=0.122 Sum_probs=121.0
Q ss_pred cceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCC
Q 042981 497 CFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKK 576 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 576 (876)
+|+.|+| ++|.+..+|..+. ++|++|+|++|.|+.+| ..+++|++|+|++| .+..+|. +.+ +
T Consensus 60 ~L~~L~L---------s~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQL---------NRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--S 121 (571)
T ss_dssp TCSEEEC---------CSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--T
T ss_pred CccEEEe---------CCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--C
Confidence 7888888 6666777777663 68888888888888888 45788888888888 4555777 655 8
Q ss_pred CceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccc
Q 042981 577 MRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMK 656 (876)
Q Consensus 577 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 656 (876)
|++|++++|.+.+ +|. .+++|+.| +++.|.+..++. .++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L----------~Ls~N~l~~lp~---------------------------~l~ 160 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYI----------NADNNQLTMLPE---------------------------LPT 160 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEE----------ECCSSCCSCCCC---------------------------CCT
T ss_pred CCEEECCCCcCCC-CCC---cCccccEE----------eCCCCccCcCCC---------------------------cCC
Confidence 8888888886644 665 45666666 333443333221 234
Q ss_pred cCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEeecCCCCCCchhhcccCC-------cEEEEecCCCCCCCCCC
Q 042981 657 NLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVSYGGNIFPKWLTSLTNL-------RDLRLKSCVICEHFPPL 729 (876)
Q Consensus 657 ~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L-------~~L~L~~~~~~~~lp~l 729 (876)
+|+.|+|++|.+.... .+. ++|+.|++++|....+|. +.. +| +.|+|++|.+....+.+
T Consensus 161 ~L~~L~Ls~N~L~~lp---------~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLP---------ELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp TCCEEECCSSCCSCCC---------CCC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred CcCEEECCCCCCCCcc---------hhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 5566666666543211 011 567777777777777777 443 66 99999999987533347
Q ss_pred Cccc-CceEeecCCCCceEe
Q 042981 730 GKLP-LEKLTLYGLYGVKRV 748 (876)
Q Consensus 730 ~~Lp-L~~L~L~~~~~l~~~ 748 (876)
..++ |+.|+|++|+.....
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHH
T ss_pred hcCCCCCEEEeeCCcCCCcC
Confidence 7899 999999998764433
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2.9e-13 Score=139.93 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=59.6
Q ss_pred cCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccC
Q 042981 494 KLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 494 ~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
.+..+..+++ ..+.+..++ .+..+.+|++|++++|.++.+| .++.+++|++|++++| .+..+|. +.+
T Consensus 17 ~l~~l~~l~l---------~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNL---------GKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKD 83 (263)
T ss_dssp HHHHHHHHHH---------TCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred HHHHHHHHHh---------cCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hcc
Confidence 4555666677 566666666 5677788888888888888777 6778888888888877 4556665 778
Q ss_pred cCCCceEecCCCCC
Q 042981 574 LKKMRSLLNGGTPL 587 (876)
Q Consensus 574 L~~L~~L~l~~~~~ 587 (876)
+++|++|++++|.+
T Consensus 84 l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 84 LTKLEELSVNRNRL 97 (263)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcc
Confidence 88888888888755
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=8.9e-13 Score=152.18 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=103.6
Q ss_pred CceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccccc
Q 042981 443 DKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPE 522 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~ 522 (876)
..++.|.++.+.+..++ .+..+++|+.|++.+|.. ..+++ +..+++|+.|+| ++|.+..+|
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l------~~~~~--l~~l~~L~~L~L---------s~N~l~~l~- 103 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL------TDIKP--LTNLKNLGWLFL---------DENKIKDLS- 103 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC------CCCGG--GGGCTTCCEEEC---------CSSCCCCCT-
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC------CCChh--hccCCCCCEEEC---------cCCCCCCCh-
Confidence 45677777777766643 567777888888766641 22222 667777888888 555555554
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLR 602 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 602 (876)
.++.|++|++|+|++|.+..+| .+..|++|+.|+|++| .+..+ ..+..+++|++|+|++|.+....| +..+++|+
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 5677777777787777777764 4777777777777777 44445 457777777777777776644333 66677777
Q ss_pred ccCceeecCccCCCccccc---cccccCCCCCCeeeeC
Q 042981 603 TLEKFAMGGGVDDISTCRL---ESLKNLQLLRECGIEG 637 (876)
Q Consensus 603 ~L~~~~~~~~~~~ls~~~l---~~L~~L~~L~~L~l~~ 637 (876)
.| +++.|.+ ..+..+++|+.|++++
T Consensus 179 ~L----------~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 179 NL----------YLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp EE----------ECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred EE----------ECcCCCCCCChHHccCCCCCEEEccC
Confidence 66 3333333 2344555666666655
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=2.4e-12 Score=130.13 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=114.3
Q ss_pred CCCceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 441 FGDKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 441 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
.+.++++|+++.|.+..+ +..|..+++|+.|++.+|. ...++...|..+++|++|+| ++|.+..
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~L---------s~N~l~~ 102 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDL---------GTNQLTV 102 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEEC---------CSSCCCC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEEC---------CCCcCCc
Confidence 367899999999999887 6778999999999998876 34555666899999999999 7777788
Q ss_pred cccc-cccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCC
Q 042981 520 IPEN-VRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLL 588 (876)
Q Consensus 520 lp~~-i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 588 (876)
+|.. +..+++|++|+|++|.|+.+|..+.++++|++|+|++|. +..+| ..+..+++|++|++++|.+.
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7755 689999999999999999999999999999999999994 55555 56889999999999999664
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=4e-12 Score=131.36 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=108.3
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
..+++.|+++.|.+..++ .+..+++|++|++.+|. ...+++ +..+++|++|++ ++|.+..+|
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~------i~~~~~--l~~l~~L~~L~L---------~~N~l~~l~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ------ISDLSP--LKDLTKLEELSV---------NRNRLKNLN 101 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCSSCCEEEC---------CSSCCSCCT
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc------cCCChh--hccCCCCCEEEC---------CCCccCCcC
Confidence 357888899888888766 67888999999997775 223333 788899999999 666667766
Q ss_pred cccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSL 601 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 601 (876)
.... .+|++|+|++|.++.+| .++++++|++|++++| .+..+| .+..+++|++|++++|.+... ..+..+++|
T Consensus 102 ~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 5333 88999999999998876 4888999999999988 466666 588899999999999977544 567778888
Q ss_pred CccC
Q 042981 602 RTLE 605 (876)
Q Consensus 602 ~~L~ 605 (876)
+.|.
T Consensus 175 ~~L~ 178 (263)
T 1xeu_A 175 NWID 178 (263)
T ss_dssp CEEE
T ss_pred CEEe
Confidence 8774
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.7e-12 Score=124.30 Aligned_cols=128 Identities=22% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCceEEEEeeecCCC--CCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGGA--SFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
+.++++|.++.|.+. .++..+..+++|+.|++.+|.. ..+ ..+..+++|++|++ ++|.+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~L---------s~N~l~~ 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISV--SNLPKLPKLKKLEL---------SENRIFG 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC------CCC--SSCCCCSSCCEEEE---------ESCCCCS
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC------CCh--hhhccCCCCCEEEC---------cCCcCch
Confidence 566777777777765 5566666677777777766542 111 33566677777777 4444444
Q ss_pred -cccccccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCccccc----cccCcCCCceEecCCCCC
Q 042981 520 -IPENVRKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPA----GIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 520 -lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~ 587 (876)
+|..+..+++|++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|..
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555556777777777777776665 56666777777777766 3444444 566677777777766643
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=5.9e-14 Score=161.06 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCceEEEEeeecCCCCCcccccCCCcceEEeeecCCCC--------CCCCchhhhHHHhccCCcceEEe-cCccccc---
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPS--------NPSLNSSILSELFSKLACFRALV-IGQRNFI--- 509 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--------~~~~~~~~~~~~~~~l~~Lr~L~-L~~~~~~--- 509 (876)
.+.+++|+++.|.+..+|..+..+++|+.|++.++... ... ....++..+..+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~-~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD-PLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC-TGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcc-cccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 34566778888877777888888888888887433100 000 1223444566677777776 4332210
Q ss_pred -cCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCC
Q 042981 510 -FDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLL 588 (876)
Q Consensus 510 -~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 588 (876)
....+|.+..+|. ..|++|+|++|.|+.+|. ++++++|++|+|++| .+..+|..++.+++|++|++++|.+.
T Consensus 427 ~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 427 SKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCC
Confidence 0001111222221 136666666666666665 666666666666666 34466666666666666666666553
Q ss_pred ccCCccCCCCCCCCccCceeecCccCCCccccc------cccccCCCCCCeeeeC
Q 042981 589 KYMPIGISKLTSLRTLEKFAMGGGVDDISTCRL------ESLKNLQLLRECGIEG 637 (876)
Q Consensus 589 ~~~p~~i~~l~~L~~L~~~~~~~~~~~ls~~~l------~~L~~L~~L~~L~l~~ 637 (876)
+ +| .++++++|++| +++.|.+ ..+..+++|+.|++++
T Consensus 500 ~-lp-~l~~l~~L~~L----------~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 500 N-VD-GVANLPRLQEL----------LLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C-CG-GGTTCSSCCEE----------ECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred C-Cc-ccCCCCCCcEE----------ECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 3 55 56666666666 2222222 3344566666666665
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=4.2e-12 Score=127.32 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCceEEEEeeecCCCCCc--ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGGASFP--MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
+..++.|.++.|.+..++ ..|..+++|+.|++.+|. ...+++..|..+++|++|+| ++|.+..
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~L---------s~N~l~~ 95 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILL---------TSNRLEN 95 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEEC---------CSSCCCC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEEC---------CCCccCc
Confidence 567889999999998773 347899999999998776 34455556899999999999 7777777
Q ss_pred ccc-ccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCC
Q 042981 520 IPE-NVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLL 588 (876)
Q Consensus 520 lp~-~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 588 (876)
+|. .+..+++|++|+|++|.|+.+ |..+.++++|++|+|++|......|..|..+++|++|++++|.+.
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 765 489999999999999999977 578999999999999999655555888999999999999999764
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=4.8e-12 Score=126.91 Aligned_cols=131 Identities=20% Similarity=0.275 Sum_probs=111.3
Q ss_pred CCceEEEEeeecCCCCCc-ccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFP-MSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
+..++.|.++.|.+..++ ..|..+++|+.|++.+|. ...+.+..|..+++|++|+| ++|.+..+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~L---------s~N~l~~l 95 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLVL---------YGNKITEL 95 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCCEEEC---------CSSCCCCC
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCCEEEC---------CCCcCCcc
Confidence 578999999999998874 478899999999998776 34455566899999999999 77888888
Q ss_pred ccc-cccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCC
Q 042981 521 PEN-VRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 521 p~~-i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 587 (876)
|.. +..+++|++|+|++|.|+.++ ..+.++++|++|+|++|......|..+..+++|++|++++|.+
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 866 588999999999999999774 5799999999999999954444445688999999999999965
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=7.4e-12 Score=124.59 Aligned_cols=140 Identities=22% Similarity=0.308 Sum_probs=114.9
Q ss_pred CCceEEEEeeecCCCCCcc-cccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFPM-SIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
+.++++|+++.|.+..++. .+..+++|++|++.+|. ...++...|..+++|++|++ ++|.+..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~ 91 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNL---------STNQLQSL 91 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEEC---------CSSCCCCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEEC---------CCCcCCcc
Confidence 5689999999999987744 57899999999998776 23455666889999999999 77777777
Q ss_pred ccc-cccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCCCccCCccCCC
Q 042981 521 PEN-VRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPLLKYMPIGISK 597 (876)
Q Consensus 521 p~~-i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 597 (876)
|.. +..+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|.+. +.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~ 163 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CT 163 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cC
Confidence 755 68999999999999999988875 7899999999999995 555554 4789999999999999653 34
Q ss_pred CCCCCcc
Q 042981 598 LTSLRTL 604 (876)
Q Consensus 598 l~~L~~L 604 (876)
+++|+.|
T Consensus 164 ~~~l~~L 170 (208)
T 2o6s_A 164 CPGIRYL 170 (208)
T ss_dssp TTTTHHH
T ss_pred CCCHHHH
Confidence 4566666
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=5.2e-12 Score=137.32 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchh-hc-cCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCcc
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKT-LC-ELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKY 590 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 590 (876)
+++.+..+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|......|..|..+++|++|++++|.+...
T Consensus 26 ~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 26 SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp CSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence 4444444554432 2355555555555554443 22 455555555555532222223455555555555555544332
Q ss_pred CCccCCCCCCCCcc
Q 042981 591 MPIGISKLTSLRTL 604 (876)
Q Consensus 591 ~p~~i~~l~~L~~L 604 (876)
.+..+..+++|+.|
T Consensus 104 ~~~~~~~l~~L~~L 117 (361)
T 2xot_A 104 DEFLFSDLQALEVL 117 (361)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred CHHHhCCCcCCCEE
Confidence 22334444444444
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.2e-13 Score=158.39 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=117.0
Q ss_pred cCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCcccccc-----CCCCCcccccccccccCcccCeee-cc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIF-----DPYPNLIREIPENVRKLIHLKYLN-LS 536 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-----~~~~~~i~~lp~~i~~L~~Lr~L~-Ls 536 (876)
..+++|+.|++.+|. ... ++..+..++.|+.|++++|.... ....+....+|..+++|.+|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~------L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------STV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH------HHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh------HHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 456677777776554 233 33446777777777774332100 000011234556667777777777 55
Q ss_pred Cccccccch------hhcc--CCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCcee
Q 042981 537 ELCIERLPK------TLCE--LYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFA 608 (876)
Q Consensus 537 ~~~i~~lp~------~i~~--L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 608 (876)
.|.+..++. .+.. ...|++|+|++| .+..+|. ++.+++|++|++++|.+. .+|..++++++|+.|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L---- 491 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL---- 491 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE----
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE----
Confidence 554443332 1111 124777777777 4556776 777777777777777553 666666666666666
Q ss_pred ecCccCCCccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCC
Q 042981 609 MGGGVDDISTCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLN 688 (876)
Q Consensus 609 ~~~~~~~ls~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~ 688 (876)
+++.|.+..+ + .+.++++|+.|+|++|.+
T Consensus 492 ------~Ls~N~l~~l------------------------p-~l~~l~~L~~L~Ls~N~l-------------------- 520 (567)
T 1dce_A 492 ------QASDNALENV------------------------D-GVANLPRLQELLLCNNRL-------------------- 520 (567)
T ss_dssp ------ECCSSCCCCC------------------------G-GGTTCSSCCEEECCSSCC--------------------
T ss_pred ------ECCCCCCCCC------------------------c-ccCCCCCCcEEECCCCCC--------------------
Confidence 3333322221 1 244555566666655543
Q ss_pred ccEEEEeecCCCCC--CchhhcccCCcEEEEecCCCCCCCCCCCc----cc-CceEee
Q 042981 689 VKELGIVSYGGNIF--PKWLTSLTNLRDLRLKSCVICEHFPPLGK----LP-LEKLTL 739 (876)
Q Consensus 689 L~~L~l~~~~~~~l--p~~l~~l~~L~~L~L~~~~~~~~lp~l~~----Lp-L~~L~L 739 (876)
..+ |..++.+++|+.|+|++|.+.+..|.... +| |+.|++
T Consensus 521 -----------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 -----------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----------CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----------CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 444 77888899999999999988766554433 67 777653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=6e-12 Score=120.48 Aligned_cols=125 Identities=22% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccc-
Q 042981 464 GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIER- 542 (876)
Q Consensus 464 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~- 542 (876)
..++|+.|++.+|. +.....+..+..+++|++|++ ++|.+..+ ..++.+++|++|+|++|.++.
T Consensus 22 ~~~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l---------~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSL---------INVGLISV-SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp CTTSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEE---------ESSCCCCC-SSCCCCSSCCEEEEESCCCCSC
T ss_pred CcccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeC---------cCCCCCCh-hhhccCCCCCEEECcCCcCchH
Confidence 34678888886654 221122333667788888888 55555555 567778888888888888776
Q ss_pred cchhhccCCcccEEeecCCCCCcccc--ccccCcCCCceEecCCCCCCccCCc----cCCCCCCCCccC
Q 042981 543 LPKTLCELYNLQKLDIRWCEDLRELP--AGIGKLKKMRSLLNGGTPLLKYMPI----GISKLTSLRTLE 605 (876)
Q Consensus 543 lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~ 605 (876)
+|..+.++++|++|++++| .+..+| ..+..+++|++|++++|.+. .+|. .+..+++|+.|.
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEET
T ss_pred HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEec
Confidence 6666777888888888887 455554 56778888888888888653 3443 566777777773
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=4.2e-12 Score=118.83 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=31.5
Q ss_pred cccccCcccCeeeccCccccc-cchhhccCCcccEEeecCCCCCcccc--ccccCcCCCceEecCCCCC
Q 042981 522 ENVRKLIHLKYLNLSELCIER-LPKTLCELYNLQKLDIRWCEDLRELP--AGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 522 ~~i~~L~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~ 587 (876)
..++.+++|++|+|++|.++. +|..++++++|++|++++|. +..+| ..+..+++|++|++++|.+
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 334445555555555555554 44444445555555555552 33322 4445555555555555543
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=133.40 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=95.1
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhc-cCCcceEEecCccccccCCCCCcccccc-ccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFS-KLACFRALVIGQRNFIFDPYPNLIREIP-ENV 524 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i 524 (876)
.++++.+.+..+|..+. +.++.|++.+|. ...++...|. .+++|++|+| ++|.+..++ ..+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L---------~~N~i~~i~~~~~ 84 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLL---------SHNHLNFISSEAF 84 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEEC---------CSSCCCEECTTTT
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC------CCccChhhhhhcccccCEEEC---------CCCcCCccChhhc
Confidence 46666677777666543 457788887665 3334444455 7888888888 666666666 457
Q ss_pred ccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccC----CCCC
Q 042981 525 RKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGI----SKLT 599 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~l~ 599 (876)
.++++|++|+|++|.|+.+|. .+.++++|++|+|++|......|..|..+++|++|++++|.+ ..+|..+ ..++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLP 163 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCC
Confidence 788888888888888887765 477888888888888854444566778888888888888865 3444432 3455
Q ss_pred CCCcc
Q 042981 600 SLRTL 604 (876)
Q Consensus 600 ~L~~L 604 (876)
+|+.|
T Consensus 164 ~L~~L 168 (361)
T 2xot_A 164 KLMLL 168 (361)
T ss_dssp TCCEE
T ss_pred cCCEE
Confidence 55555
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.5e-11 Score=120.48 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=85.9
Q ss_pred EEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhH-HHhccCCcceEEecCccccccCCCCCccccc-ccc
Q 042981 446 RHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILS-ELFSKLACFRALVIGQRNFIFDPYPNLIREI-PEN 523 (876)
Q Consensus 446 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~ 523 (876)
+.++++.+.+..+|..+.. +|++|++.+|. ...+++ .+|..+++|++|+| ++|.+..+ |..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~~~ 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE------LGRISSDGLFGRLPHLVKLEL---------KRNQLTGIEPNA 73 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEEC---------CSSCCCCBCTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc------CCccCCccccccCCCCCEEEC---------CCCCCCCcCHhH
Confidence 4566777777776665533 77788776664 122222 23667778888888 55666655 566
Q ss_pred cccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLL 588 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 588 (876)
+.++++|++|+|++|.|+.+|.. +.++++|++|+|++|......|..+..+++|++|++++|.+.
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77778888888888887766653 777788888888877555555777777788888888777654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=7.2e-12 Score=117.24 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=89.9
Q ss_pred CCceEEEEeeecCCC--CCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccc
Q 042981 442 GDKVRHLGLNFEGGA--SFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIRE 519 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~ 519 (876)
+.+++++.++.|.+. .++..+..+++|+.|++.+|.. ..+ ..+..+++|++|++ ++|.+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~L---------s~n~i~~ 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------TSI--ANLPKLNKLKKLEL---------SDNRVSG 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC------CCC--TTCCCCTTCCEEEC---------CSSCCCS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC------CCc--hhhhcCCCCCEEEC---------CCCcccc
Confidence 466788888888776 5677777788888888876652 111 34677888888888 5666665
Q ss_pred -cccccccCcccCeeeccCccccccc--hhhccCCcccEEeecCCCCCccccc----cccCcCCCceEecC
Q 042981 520 -IPENVRKLIHLKYLNLSELCIERLP--KTLCELYNLQKLDIRWCEDLRELPA----GIGKLKKMRSLLNG 583 (876)
Q Consensus 520 -lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~ 583 (876)
+|..++.+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|+++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 6666677888888888888888765 67888888888888887 4555554 57778888888765
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=1.3e-11 Score=119.18 Aligned_cols=125 Identities=26% Similarity=0.194 Sum_probs=86.3
Q ss_pred cccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccc
Q 042981 461 SIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCI 540 (876)
Q Consensus 461 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i 540 (876)
.+.++++|+.|++.+|.. ..+ +.+....++|++|++ ++|.+..+ +.++.+++|++|+|++|.|
T Consensus 14 ~~~~~~~L~~L~l~~n~l------~~i-~~~~~~~~~L~~L~L---------s~N~l~~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI------PVI-ENLGATLDQFDAIDF---------SDNEIRKL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp EEECTTSCEEEECTTSCC------CSC-CCGGGGTTCCSEEEC---------CSSCCCEE-CCCCCCSSCCEEECCSSCC
T ss_pred hcCCcCCceEEEeeCCCC------chh-HHhhhcCCCCCEEEC---------CCCCCCcc-cccccCCCCCEEECCCCcc
Confidence 455677777887766652 121 222333447888888 55666665 5677788888888888888
Q ss_pred cccchhh-ccCCcccEEeecCCCCCccccc--cccCcCCCceEecCCCCCCccCCcc----CCCCCCCCcc
Q 042981 541 ERLPKTL-CELYNLQKLDIRWCEDLRELPA--GIGKLKKMRSLLNGGTPLLKYMPIG----ISKLTSLRTL 604 (876)
Q Consensus 541 ~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L 604 (876)
+.+|+.+ +.+++|++|++++| .+..+|. .+..+++|++|++++|.+ ..+|.. ++.+++|+.|
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEE
T ss_pred cccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCcccee
Confidence 8877654 78888888888887 4566776 677888888888888865 355553 5666666666
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=8.4e-12 Score=147.88 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=89.3
Q ss_pred cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCc
Q 042981 459 PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSEL 538 (876)
Q Consensus 459 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~ 538 (876)
+..+..+++|+.|++.+|. ...++..+ ..+++|++|+| ++|.+..+|..|++|++|++|+|++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~------l~~l~~~~-~~l~~L~~L~L---------s~N~l~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ------IFNISANI-FKYDFLTRLYL---------NGNSLTELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -----CCCCCCEEECTTSC------CSCCCGGG-GGCCSCSCCBC---------TTSCCSCCCGGGGGGTTCCEEECTTS
T ss_pred hhhhccCCCCcEEECCCCC------CCCCChhh-cCCCCCCEEEe---------eCCcCcccChhhhCCCCCCEEeCcCC
Confidence 5667778888888887665 22334443 37888888888 66777778888888888888888888
Q ss_pred cccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccC
Q 042981 539 CIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGI 595 (876)
Q Consensus 539 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 595 (876)
.|+.+|..|++|++|++|+|++| .+..+|..|++|++|++|+|++|.+.+.+|..+
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 88888888888888888888888 567888888888888888888887766666544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=3.8e-11 Score=117.55 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=77.1
Q ss_pred cceEEecCccccccCCCCCcccccccc--cccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCccccccccC
Q 042981 497 CFRALVIGQRNFIFDPYPNLIREIPEN--VRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAGIGK 573 (876)
Q Consensus 497 ~Lr~L~L~~~~~~~~~~~~~i~~lp~~--i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 573 (876)
.|++|++ ++|.+..++.. ++.+++|++|+|++|.|+.+ |..+.++++|++|+|++|......|..+..
T Consensus 30 ~l~~L~l---------~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLL---------NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp TCSEEEC---------CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred CCCEEEC---------CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcC
Confidence 7888888 66677777653 78888888888888888866 567888888888888888544445555788
Q ss_pred cCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 574 LKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 574 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
+++|++|++++|.+.+..|..++.+++|++|
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 8888888888888777777777777777777
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.8e-11 Score=116.78 Aligned_cols=127 Identities=20% Similarity=0.120 Sum_probs=107.4
Q ss_pred CCceEEEEeeecCCCCCcccccCCC-cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCccccc
Q 042981 442 GDKVRHLGLNFEGGASFPMSIHGLN-RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREI 520 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~l 520 (876)
..+++.|.+++|.+..++. +..+. +|+.|++.+|.. ..+ ..+..+++|++|++ ++|.+..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l------~~~--~~l~~l~~L~~L~L---------s~N~l~~~ 79 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI------RKL--DGFPLLRRLKTLLV---------NNNRICRI 79 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC------CEE--CCCCCCSSCCEEEC---------CSSCCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCC------Ccc--cccccCCCCCEEEC---------CCCccccc
Confidence 6789999999999988754 44444 999999987762 222 34789999999999 77888888
Q ss_pred cccc-ccCcccCeeeccCccccccch--hhccCCcccEEeecCCCCCcccccc----ccCcCCCceEecCCCCC
Q 042981 521 PENV-RKLIHLKYLNLSELCIERLPK--TLCELYNLQKLDIRWCEDLRELPAG----IGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 521 p~~i-~~L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~ 587 (876)
|..+ +.+++|++|+|++|.|+.+|. .+..+++|++|++++| .+..+|.. +..+++|++|++++|..
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8665 899999999999999999997 8999999999999999 56677875 89999999999998854
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=113.87 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=54.9
Q ss_pred EEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccc
Q 042981 447 HLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVR 525 (876)
Q Consensus 447 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~ 525 (876)
.++++.+.+..+|..+. ++|++|++.+|.. ..++ ..|..+++|++|+| ++|.+..++ ..|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i------~~ip-~~~~~l~~L~~L~L---------s~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQF------TLVP-KELSNYKHLTLIDL---------SNNRISTLSNQSFS 75 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCC------CSCC-GGGGGCTTCCEEEC---------CSSCCCCCCTTTTT
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcC------chhH-HHhhcccCCCEEEC---------CCCcCCEeCHhHcc
Confidence 34455555555444332 3455555544431 1122 23445555555555 444444433 2345
Q ss_pred cCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCC
Q 042981 526 KLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGT 585 (876)
Q Consensus 526 ~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 585 (876)
++++|++|+|++|.|+.+|. .+.++++|++|+|++|. +..+|. .+..+++|++|++++|
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 55555555555555554443 34455555555555542 333332 2444555555555554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=112.99 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCC
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMP 592 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 592 (876)
+++.+..+|..+. .+|++|+|++|.|+.+|..+.++++|++|+|++|......|..|..+++|++|++++|.+....|
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 18 SNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 4555555555443 35666666666666666666666666666666663333333445666666666666665544444
Q ss_pred ccCCCCCCCCcc
Q 042981 593 IGISKLTSLRTL 604 (876)
Q Consensus 593 ~~i~~l~~L~~L 604 (876)
..++.+++|+.|
T Consensus 96 ~~f~~l~~L~~L 107 (193)
T 2wfh_A 96 RTFDGLKSLRLL 107 (193)
T ss_dssp TTTTTCTTCCEE
T ss_pred HHhCCCCCCCEE
Confidence 445555555555
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=1.6e-10 Score=111.53 Aligned_cols=126 Identities=24% Similarity=0.343 Sum_probs=89.8
Q ss_pred EEEEeeecCCCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccc-c
Q 042981 446 RHLGLNFEGGASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPEN-V 524 (876)
Q Consensus 446 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~-i 524 (876)
+.+.+..+++..+|..+ .++|++|++.++. ...++...|..+++|++|++ ++|.+..+|.. +
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSL---------SQNQIQSLPDGVF 72 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEEC---------CSSCCCCCCTTTT
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc------ccEeCHHHhcCcccccEEEC---------CCCcceEeChhHc
Confidence 34666667776666444 3688888887665 23344555677888888888 66666676654 5
Q ss_pred ccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCc
Q 042981 525 RKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLK 589 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 589 (876)
..+++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++++|.+..
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7888888888888888877764 578888888888888 45555554 4678888888888886543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1.1e-09 Score=117.39 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=69.8
Q ss_pred CCcceEEeeecCCCCCCCCchhhhHHHhcc-CCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCcccccc
Q 042981 465 LNRLRTLLIYFQSPSNPSLNSSILSELFSK-LACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERL 543 (876)
Q Consensus 465 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l 543 (876)
+.+|+.|.+.++- ....... +.. +++|++|||++| .+......-+.++.++++.+..+ .+
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n---------~i~~~~~~~~~~~~~~~~~~~~~---~I 84 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNA---------EIKMYSGKAGTYPNGKFYIYMAN---FV 84 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEE---------EECCEEESSSSSGGGCCEEECTT---EE
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcc---------eeEEecCcccccccccccccccc---cc
Confidence 5678888886542 1222233 333 888999999444 44411111122233566666665 33
Q ss_pred ch-hhcc--------CCcccEEeecCCCCCcccc-ccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 544 PK-TLCE--------LYNLQKLDIRWCEDLRELP-AGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 544 p~-~i~~--------L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
|+ .|.+ +++|+.|+|.+ .+..++ ..|..+++|+.|++++|.+....+..|..+.++..+
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred CHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 33 4666 88899998887 344444 457888899999988886654445556555544444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=2.1e-12 Score=127.34 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=74.6
Q ss_pred CCCCcccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeee
Q 042981 455 GASFPMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLN 534 (876)
Q Consensus 455 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~ 534 (876)
++.++..+..+++|++|++.+|.. ..++ .+..+++|++|++ ++|.+..+|..+..+++|++|+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l------~~l~--~~~~l~~L~~L~l---------~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNI------EKIS--SLSGMENLRILSL---------GRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEE------SCCC--CHHHHTTCCEEEE---------EEEEECSCSSHHHHHHHCSEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCC------cccc--ccccCCCCCEEEC---------CCCCcccccchhhcCCcCCEEE
Confidence 344444666677777777765541 1222 3566677777777 5555556666666667777777
Q ss_pred ccCccccccchhhccCCcccEEeecCCCCCccccc--cccCcCCCceEecCCCCCCccCC
Q 042981 535 LSELCIERLPKTLCELYNLQKLDIRWCEDLRELPA--GIGKLKKMRSLLNGGTPLLKYMP 592 (876)
Q Consensus 535 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p 592 (876)
|++|.++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+....|
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 7777777766 4667777777777776 3444443 56677777777777775544433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=5.4e-12 Score=124.40 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=78.0
Q ss_pred HhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccccc
Q 042981 491 LFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAG 570 (876)
Q Consensus 491 ~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 570 (876)
.+..+++|++|++ ++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .
T Consensus 43 ~~~~l~~L~~L~l---------s~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLAL---------STNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEEC---------SEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred HHhcCCCCCEEEC---------CCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c
Confidence 4778888899998 666666777 788888899999998888888888888888999999888 556676 5
Q ss_pred ccCcCCCceEecCCCCCCccCC--ccCCCCCCCCcc
Q 042981 571 IGKLKKMRSLLNGGTPLLKYMP--IGISKLTSLRTL 604 (876)
Q Consensus 571 i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L 604 (876)
+..+++|++|++++|.+.. +| ..+..+++|++|
T Consensus 111 ~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEE
T ss_pred cccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEE
Confidence 8888889999888886532 22 245566666666
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=2.1e-09 Score=103.53 Aligned_cols=99 Identities=28% Similarity=0.390 Sum_probs=76.5
Q ss_pred CCcceEEecCccccccCCCCCcccccccc-cccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccc-cc
Q 042981 495 LACFRALVIGQRNFIFDPYPNLIREIPEN-VRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPA-GI 571 (876)
Q Consensus 495 l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~-i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i 571 (876)
.++|+.|++ ++|.+..+|.. ++.+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+
T Consensus 27 ~~~l~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 96 (177)
T 2o6r_A 27 PSSATRLEL---------ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF 96 (177)
T ss_dssp CTTCSEEEC---------CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCcEEEe---------CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHh
Confidence 368899999 66667777654 58889999999999999988765 6889999999999984 445544 46
Q ss_pred cCcCCCceEecCCCCCCccCCcc-CCCCCCCCcc
Q 042981 572 GKLKKMRSLLNGGTPLLKYMPIG-ISKLTSLRTL 604 (876)
Q Consensus 572 ~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 604 (876)
..+++|++|++++|.+. .+|.. +..+++|++|
T Consensus 97 ~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEE
T ss_pred hCCcccCEEECcCCcce-EeCHHHhcCCcccCEE
Confidence 88999999999999775 44443 4667777777
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.93 E-value=1.6e-09 Score=120.11 Aligned_cols=233 Identities=14% Similarity=0.005 Sum_probs=127.4
Q ss_pred CCceeeccchHHHHHHHh-hccCCcCCCCeEEEEE--EecCCchHHHHHHHHHcCccccc-----cCC-eEEEEEeCCch
Q 042981 123 EGEVCGRVDEKNELLSKL-LFESSEQQKGLHVISL--VGLGGMGKTTLAQLAYNNDEVKR-----NFE-KVIWVCVSDTF 193 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~-~~~wv~vs~~~ 193 (876)
+..++||+++++++.+.+ ...........+++.| +|++|+||||||+++++. ... .|+ .++|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999988 4321100013345555 999999999999999984 322 123 35677754433
Q ss_pred hHHHHHHHHH-------------------------Hh--------ccccccCC------ccChhhHHhhhccC---C--C
Q 042981 194 EEIRVANAII-------------------------EG--------LDDVWDGD------YNKWEPFFHCLKHG---L--H 229 (876)
Q Consensus 194 ~~~~~~~~i~-------------------------~~--------lDdvw~~~------~~~~~~l~~~l~~~---~--~ 229 (876)
+...+...++ .. |||+|.-+ .+.+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 3333222221 11 89987632 12333333333322 1 3
Q ss_pred CCEEEEEcCchHHHHhh--------CC-cceEeCCCCCcccc--ccCCC----cCCccchHHHHHHHHHHcC------CC
Q 042981 230 GSKILLTTRNESVARMM--------GS-TNIIFIEQLTEEES--FSGRS----FEDCEKLEPIGRKIARKCK------GL 288 (876)
Q Consensus 230 gs~iivTTR~~~v~~~~--------~~-~~~~~l~~L~~~~~--~f~~~----~~~~~~l~~~~~~i~~~c~------Gl 288 (876)
...||+||+...+...+ .. ...+++.+++.++. ++... .....--.+....|++.|+ |.
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence 34478888766543211 11 22399999999987 33211 1111122457788999999 99
Q ss_pred chHHHHhhhhh-c-----CC--ccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCCchhHHHHHhHhccCC--CCce
Q 042981 289 PLAAKATGNLL-R-----SK--SILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPSNSMVKRCFSYCAIFP--KEYN 358 (876)
Q Consensus 289 Plai~~~~~~L-~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~lk~cfly~~~fp--~~~~ 358 (876)
|..+..+.... . .. -+.+.+..++..... ...+.-++..||. +.+.++..++.+. .+..
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~--~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSI--HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCC
Confidence 97655544321 1 11 123334433322100 2334556788998 7888888888653 2234
Q ss_pred eChHHHHHHH
Q 042981 359 IKKKELISLW 368 (876)
Q Consensus 359 i~~~~li~~W 368 (876)
+...++...|
T Consensus 328 ~~~~~~~~~~ 337 (412)
T 1w5s_A 328 INAGLLRQRY 337 (412)
T ss_dssp BCHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 5555544433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=2.6e-09 Score=102.01 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=51.9
Q ss_pred CCCcccccccccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCcc
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKY 590 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~ 590 (876)
+++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. |..+++|++|++++|.+.+.
T Consensus 17 s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 17 SGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEe
Confidence 5555566665543 5666666666666655 3446666666666666663 3344433 45666666666666655433
Q ss_pred CCccCCCCCCCCcc
Q 042981 591 MPIGISKLTSLRTL 604 (876)
Q Consensus 591 ~p~~i~~l~~L~~L 604 (876)
.+..++.+++|+.|
T Consensus 94 ~~~~~~~l~~L~~L 107 (170)
T 3g39_A 94 PRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred CHHHhcCCCCCCEE
Confidence 33345566666655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=4.4e-09 Score=100.76 Aligned_cols=88 Identities=25% Similarity=0.340 Sum_probs=38.8
Q ss_pred CCCcccccccccccCcccCeeeccCcccccc-chhhccCCcccEEeecCCCCCcccccc-ccCcCCCceEecCCCCCCcc
Q 042981 513 YPNLIREIPENVRKLIHLKYLNLSELCIERL-PKTLCELYNLQKLDIRWCEDLRELPAG-IGKLKKMRSLLNGGTPLLKY 590 (876)
Q Consensus 513 ~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~ 590 (876)
+++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +.++++|++|++++|.+. .
T Consensus 20 ~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~-~ 95 (174)
T 2r9u_A 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK-S 95 (174)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc-e
Confidence 4444444444432 4455555555555444 233444555555555544 23333332 344555555555554432 2
Q ss_pred CCc-cCCCCCCCCcc
Q 042981 591 MPI-GISKLTSLRTL 604 (876)
Q Consensus 591 ~p~-~i~~l~~L~~L 604 (876)
+|. .++.+++|+.|
T Consensus 96 l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 96 IPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCTTTTTTCTTCSEE
T ss_pred eCHHHhccccCCCEE
Confidence 222 24444444444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=2.7e-09 Score=102.26 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=59.1
Q ss_pred CcceEEecCccccccCCCCCccccc-ccccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCcccccc-cc
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREI-PENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPAG-IG 572 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~ 572 (876)
+.|++|+| ++|.+..+ |..+.++++|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|.. +.
T Consensus 33 ~~L~~L~L---------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWL---------NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp TTCSEEEC---------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEe---------CCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 56777777 66666665 45667788888888888888877765 467888888888877 45555554 77
Q ss_pred CcCCCceEecCCCCC
Q 042981 573 KLKKMRSLLNGGTPL 587 (876)
Q Consensus 573 ~L~~L~~L~l~~~~~ 587 (876)
.+++|++|++++|.+
T Consensus 103 ~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCSEEECCSSCB
T ss_pred cccCCCEEEeCCCCc
Confidence 788888888887755
No 144
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=9.6e-09 Score=111.40 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=102.6
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc---------
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--------- 192 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--------- 192 (876)
....++||+++.+.+.+ +. . +++.|+|++|+|||||++++.+. ... ..+|+.+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34579999999999998 63 1 58999999999999999999873 222 2467765431
Q ss_pred ----------------------------------------------hhHHHHHHHHHH----h----ccccccCCc---c
Q 042981 193 ----------------------------------------------FEEIRVANAIIE----G----LDDVWDGDY---N 215 (876)
Q Consensus 193 ----------------------------------------------~~~~~~~~~i~~----~----lDdvw~~~~---~ 215 (876)
.....+...+.+ . +||++.-+. .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 011223322222 1 788865321 2
Q ss_pred ChhhHHhhhccCCCCCEEEEEcCchHHHHhh-----------CC-cceEeCCCCCcccc--ccCCC----cCCccchHHH
Q 042981 216 KWEPFFHCLKHGLHGSKILLTTRNESVARMM-----------GS-TNIIFIEQLTEEES--FSGRS----FEDCEKLEPI 277 (876)
Q Consensus 216 ~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~--~f~~~----~~~~~~l~~~ 277 (876)
.|..+...+.+...+.++|+|+|.......+ +. ...+++.+|+.+|+ ++... .......
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--- 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--- 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH---
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH---
Confidence 3433333333222467899999987643211 11 25789999999998 33211 1111121
Q ss_pred HHHHHHHcCCCchHHHHhhhhhcC
Q 042981 278 GRKIARKCKGLPLAAKATGNLLRS 301 (876)
Q Consensus 278 ~~~i~~~c~GlPlai~~~~~~L~~ 301 (876)
..|++.|+|.|+++..++..+..
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHHHcc
Confidence 78999999999999999887643
No 145
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=8.4e-09 Score=111.52 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=102.6
Q ss_pred cCCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCch--------
Q 042981 122 DEGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-------- 193 (876)
Q Consensus 122 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------- 193 (876)
....++||+++.+++.+++.. + +++.|+|++|+|||||++++++.. . .+|+.+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 345799999999999998863 1 689999999999999999998732 1 5666654321
Q ss_pred -------------------------------------hHHHHHHHHHH------h----ccccccCCc-------cChhh
Q 042981 194 -------------------------------------EEIRVANAIIE------G----LDDVWDGDY-------NKWEP 219 (876)
Q Consensus 194 -------------------------------------~~~~~~~~i~~------~----lDdvw~~~~-------~~~~~ 219 (876)
+...+...+.+ . +||++.-+. +.+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 11122222211 1 788865321 11222
Q ss_pred HHhhhccCCCCCEEEEEcCchHHHHhh-----------CC-cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHH
Q 042981 220 FFHCLKHGLHGSKILLTTRNESVARMM-----------GS-TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIAR 283 (876)
Q Consensus 220 l~~~l~~~~~gs~iivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~ 283 (876)
+...... ..+.++|+|++...+...+ +. ...+++.+|+.+|+ ++.... ...+--.+.+..|++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3222222 2477899999886542211 11 24789999999998 322110 000112456789999
Q ss_pred HcCCCchHHHHhhhhh
Q 042981 284 KCKGLPLAAKATGNLL 299 (876)
Q Consensus 284 ~c~GlPlai~~~~~~L 299 (876)
.|+|.|+++..++..+
T Consensus 234 ~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999999998764
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=7.2e-09 Score=98.88 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=62.1
Q ss_pred CcceEEecCccccccCCCCCccccc-ccccccCcccCeeeccCccccccchh-hccCCcccEEeecCCCCCccccc-ccc
Q 042981 496 ACFRALVIGQRNFIFDPYPNLIREI-PENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCEDLRELPA-GIG 572 (876)
Q Consensus 496 ~~Lr~L~L~~~~~~~~~~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~ 572 (876)
+.|++|+| ++|.+..+ |..+.++.+|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|. .+.
T Consensus 30 ~~l~~L~L---------~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~ 99 (170)
T 3g39_A 30 TTTQVLYL---------YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD 99 (170)
T ss_dssp TTCSEEEC---------CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEc---------CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc
Confidence 66778888 66666666 45678888888888888888887765 578888888888888 4555554 477
Q ss_pred CcCCCceEecCCCCC
Q 042981 573 KLKKMRSLLNGGTPL 587 (876)
Q Consensus 573 ~L~~L~~L~l~~~~~ 587 (876)
.+++|++|++++|.+
T Consensus 100 ~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 100 NLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCCCCCEEEeCCCCC
Confidence 888888888888865
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=3.9e-08 Score=100.17 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=109.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-------------------cCCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-------------------NFEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 184 (876)
.+++|++..++.+..++.... ..+++.|+|.+|+||||||+++++...... .+...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 469999999999999987532 235889999999999999999987321111 11122
Q ss_pred EEEEeCCchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHH-hhCC
Q 042981 185 IWVCVSDTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VAR-MMGS 248 (876)
Q Consensus 185 ~wv~vs~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~ 248 (876)
..+....... ....+.+++. +||++.-+...++.+...+.....+.++|+||+... +.. ....
T Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 98 IEIDAASRTK-VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp EEEETTCGGG-HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EEecCccccc-HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH
Confidence 3333332222 2223344432 899876655667778777776666788999887653 211 1223
Q ss_pred cceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhhhhh
Q 042981 249 TNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATGNLL 299 (876)
Q Consensus 249 ~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~~L 299 (876)
...+++++++.++. ++.... ....--.+....|++.|+|.|..+..+...+
T Consensus 177 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46899999999887 222110 0111124567889999999999888776443
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=2e-08 Score=107.36 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=48.2
Q ss_pred CcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccc-ccccC--------cCCCceEecCCCCCCccCCccCCC
Q 042981 527 LIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELP-AGIGK--------LKKMRSLLNGGTPLLKYMPIGISK 597 (876)
Q Consensus 527 L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~--------L~~L~~L~l~~~~~~~~~p~~i~~ 597 (876)
+++|++|+|++|.|......-+.++.+..+.+..+ .+| ..|.+ +++|+.|++.. .+...-+..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 78899999999998822211223333555665544 233 34566 99999999988 454444456888
Q ss_pred CCCCCcc
Q 042981 598 LTSLRTL 604 (876)
Q Consensus 598 l~~L~~L 604 (876)
+++|+.+
T Consensus 123 ~~~L~~l 129 (329)
T 3sb4_A 123 CDNLKIC 129 (329)
T ss_dssp CTTCCEE
T ss_pred CcccceE
Confidence 9999988
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=1.3e-06 Score=95.36 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=50.3
Q ss_pred hhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCC
Q 042981 487 ILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDL 564 (876)
Q Consensus 487 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l 564 (876)
+....|.++ +|+.+.+ ..+ +..++ ..|.+ .+|+.+.|.. .++.++. .|.++.+|+.+++.+| .+
T Consensus 127 I~~~aF~~~-~L~~i~l---------~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l 192 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVL---------NEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KI 192 (401)
T ss_dssp ECTTTTTTC-CCSEEEC---------CTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CC
T ss_pred ehHhhcccC-CccEEEe---------CCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cc
Confidence 334445554 4666666 222 34443 22333 2466666654 3555542 4566666666666655 34
Q ss_pred ccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCcc
Q 042981 565 RELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTL 604 (876)
Q Consensus 565 ~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 604 (876)
..+|.......+|+.+.+..+ +...-...|.++++|+.+
T Consensus 193 ~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 193 TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 455544434556666666543 222222334444444444
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.61 E-value=1.1e-07 Score=104.22 Aligned_cols=211 Identities=15% Similarity=0.065 Sum_probs=118.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccccc--------CCeEEEEEeCCch-h
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRN--------FEKVIWVCVSDTF-E 194 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~ 194 (876)
..++||+++++++.+++..... ....+.+.|+|++|+||||||+++++. .... ....+|+..+... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 6799999999999988865211 224568999999999999999999983 3221 2345677654433 2
Q ss_pred HHHHHH-----------------------HHHHh---------ccccccCCccChhhH-HhhhccCCCCCEEEEEcCchH
Q 042981 195 EIRVAN-----------------------AIIEG---------LDDVWDGDYNKWEPF-FHCLKHGLHGSKILLTTRNES 241 (876)
Q Consensus 195 ~~~~~~-----------------------~i~~~---------lDdvw~~~~~~~~~l-~~~l~~~~~gs~iivTTR~~~ 241 (876)
...+.. .+... ||+++.-....+..+ ...+.....+.+||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 222222 22111 788765322222223 333333226788999998653
Q ss_pred H--------HHhhCCcceEeCCCCCcccc--ccCC----CcCCccchHHHHHHHHHHcC---CCch-HHHHhhhhh--c-
Q 042981 242 V--------ARMMGSTNIIFIEQLTEEES--FSGR----SFEDCEKLEPIGRKIARKCK---GLPL-AAKATGNLL--R- 300 (876)
Q Consensus 242 v--------~~~~~~~~~~~l~~L~~~~~--~f~~----~~~~~~~l~~~~~~i~~~c~---GlPl-ai~~~~~~L--~- 300 (876)
. ...+ ...+++++++.++. ++.. ......--.+..+.+++.|+ |-|. |+..+..+. .
T Consensus 176 ~~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 176 VRDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hHhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 2 1211 23899999999887 2211 11111111245567777777 8776 444433322 2
Q ss_pred --CCccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCCchhHHHHHhHhcc
Q 042981 301 --SKSILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPSNSMVKRCFSYCAI 352 (876)
Q Consensus 301 --~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~lk~cfly~~~ 352 (876)
..-+.+.+..+++... ...+.-++..|+. +.|..+..++.
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~--~~~~~l~al~~ 295 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPF--HYKLALRSLIE 295 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCH--HHHHHHHHHHH
Confidence 1234566766665421 1234456667776 44444443443
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.60 E-value=1.3e-07 Score=94.76 Aligned_cols=164 Identities=15% Similarity=0.051 Sum_probs=102.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-cCC-eEEEEEeCCchhHHHHHH-
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-NFE-KVIWVCVSDTFEEIRVAN- 200 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~- 200 (876)
.+++|+++.++++.+++... ..+.+.|+|.+|+||||+|+.+++. ... .+. ..+.+..+.......+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH
Confidence 46899999999999988753 2234889999999999999999873 222 222 234445444444333322
Q ss_pred --HHHHh------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchHH-HH-hhCCcceEeCCCCCcccc--
Q 042981 201 --AIIEG------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNESV-AR-MMGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 201 --~i~~~------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~-~~~~~~~~~l~~L~~~~~-- 262 (876)
..... +||++.-....++.+...+.....+.++|+||+...- .. .......+++.+++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 168 (226)
T 2chg_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (226)
T ss_dssp HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHH
Confidence 22211 7888766545566677777666667889999886531 11 112234889999998887
Q ss_pred ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 263 FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 263 ~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
++.... ....--.+....+++.++|.|..+..+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 169 RLLEICEKEGVKITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 221110 001112356677888999999865443
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=3e-07 Score=100.48 Aligned_cols=224 Identities=12% Similarity=0.090 Sum_probs=136.8
Q ss_pred cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccC
Q 042981 459 PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSE 537 (876)
Q Consensus 459 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~ 537 (876)
...|.++ +|+.+.+..+ ...+...+|.++ .|+.+.+ .. .+..++ ..|.++.+|+.++|++
T Consensus 129 ~~aF~~~-~L~~i~l~~~-------i~~I~~~aF~~~-~L~~i~l---------p~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-------LKSIGDMAFFNS-TVQEIVF---------PS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-------CCEECTTTTTTC-CCCEEEC---------CT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred HhhcccC-CccEEEeCCC-------ccEECHHhcCCC-CceEEEe---------CC-CccEehHHHhhCcccCCeeecCC
Confidence 4556665 7999988543 244555667775 6999998 43 456665 5678899999999999
Q ss_pred ccccccchhhccCCcccEEeecCCCCCccc-cccccCcCCCceEecCCCCCCccCC-ccCCCCCCCCccCceeecCccCC
Q 042981 538 LCIERLPKTLCELYNLQKLDIRWCEDLREL-PAGIGKLKKMRSLLNGGTPLLKYMP-IGISKLTSLRTLEKFAMGGGVDD 615 (876)
Q Consensus 538 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~ 615 (876)
|.++.+|.......+|+.+.|..+ +..+ ...|.++++|+.+.+..+ + ..++ ..|.+ .+|+.+.. ...
T Consensus 190 n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~~-~~L~~i~l---p~~--- 258 (401)
T 4fdw_A 190 TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFRE-SGITTVKL---PNG--- 258 (401)
T ss_dssp SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTTT-CCCSEEEE---ETT---
T ss_pred CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-c-cCcccccccc-CCccEEEe---CCC---
Confidence 999999986666799999999854 4444 456788999999999876 3 3333 34444 56666632 111
Q ss_pred CccccccccccCCCCCCeeeeCcCCC-CCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEE
Q 042981 616 ISTCRLESLKNLQLLRECGIEGLSNV-SHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGI 694 (876)
Q Consensus 616 ls~~~l~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 694 (876)
+..-.-..+.++++|+.+.+.+.... ..........|.+|.+|+.+.+.. .+... -...+..+.+|+.+.+
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-------~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-------GQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-------CTTTTTTCCSCCEEEE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-------hhhhhcCCCCccEEEE
Confidence 11111223456667777777552111 011112234567777777777762 22111 0123445567777777
Q ss_pred eecCCCCC-CchhhcccCCcEEEEecCCC
Q 042981 695 VSYGGNIF-PKWLTSLTNLRDLRLKSCVI 722 (876)
Q Consensus 695 ~~~~~~~l-p~~l~~l~~L~~L~L~~~~~ 722 (876)
..+ ...+ +..+..+ +|+.|++.+|..
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 443 2333 3344456 777777777654
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1.1e-07 Score=102.39 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=40.7
Q ss_pred hccCCcceEEecCccccccCCCC-Ccccccc-cccccCcccCeeeccCccccccch-hhccCCcccEEeecCCCCCcccc
Q 042981 492 FSKLACFRALVIGQRNFIFDPYP-NLIREIP-ENVRKLIHLKYLNLSELCIERLPK-TLCELYNLQKLDIRWCEDLRELP 568 (876)
Q Consensus 492 ~~~l~~Lr~L~L~~~~~~~~~~~-~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp 568 (876)
+..+++|+.|+| ++ |.+..+| ..|++|.+|++|+|++|.|+.+|+ .|.+|++|+.|+|++| .+..+|
T Consensus 27 l~~~~~L~~L~l---------~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYI---------ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp SCSCSCCSEEEC---------CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCCCCCeeEEEc---------cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 445555555555 32 4444444 334555555555555555554433 3455555555555555 333444
Q ss_pred ccccCcCCCceEecCCCC
Q 042981 569 AGIGKLKKMRSLLNGGTP 586 (876)
Q Consensus 569 ~~i~~L~~L~~L~l~~~~ 586 (876)
..+....+|+.|++.+|.
T Consensus 97 ~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp STTTCSCCCCEEECCSSC
T ss_pred HHHcccCCceEEEeeCCC
Confidence 333222225555555553
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=2.2e-06 Score=93.89 Aligned_cols=309 Identities=13% Similarity=0.044 Sum_probs=152.1
Q ss_pred cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccC
Q 042981 459 PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSE 537 (876)
Q Consensus 459 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~ 537 (876)
..+|.+|.+|+++.+..+ ...+...+|.+|.+|+.+++ ..+ +..++ ..+.++..|+.+.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-------i~~I~~~aF~~c~~L~~i~l---------p~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-------VREIGEFAFENCSKLEIINI---------PDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-------CCEECTTTTTTCTTCCEECC---------CTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHHhhCCCCceEEEeCCC-------ccCcchhHhhCCCCCcEEEe---------CCC-ceEccchhhcccccchhhcccC
Confidence 456888899999988432 24455667889999999998 332 44454 3467778888877765
Q ss_pred ccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCCCccCceeecCccCCC
Q 042981 538 LCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSLRTLEKFAMGGGVDDI 616 (876)
Q Consensus 538 ~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~l 616 (876)
+ +..++ ..+.++..+......... ..-...|.++++|+.+.+..+ ....-...+.++.+|+.+..-. ....+
T Consensus 127 ~-l~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~---~~~~I 199 (394)
T 4fs7_A 127 M-LKSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR---NLKII 199 (394)
T ss_dssp T-CCEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT---TCCEE
T ss_pred c-eeeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC---CceEe
Confidence 4 44443 345555444433333221 122345677888888888665 2222234466677777663210 00000
Q ss_pred ccccccccccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHHHHhhCCCCCCccEEEEee
Q 042981 617 STCRLESLKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQLLEALQPPLNVKELGIVS 696 (876)
Q Consensus 617 s~~~l~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 696 (876)
.-..+.++..|+.+.+... ..... .......+|+.+.+..+.. .. ....+..+.+++.+.+..
T Consensus 200 ---~~~~F~~~~~L~~i~~~~~--~~~i~----~~~~~~~~l~~i~ip~~~~-~i-------~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 200 ---RDYCFAECILLENMEFPNS--LYYLG----DFALSKTGVKNIIIPDSFT-EL-------GKSVFYGCTDLESISIQN 262 (394)
T ss_dssp ---CTTTTTTCTTCCBCCCCTT--CCEEC----TTTTTTCCCCEEEECTTCC-EE-------CSSTTTTCSSCCEEEECC
T ss_pred ---CchhhccccccceeecCCC--ceEee----hhhcccCCCceEEECCCce-ec-------ccccccccccceeEEcCC
Confidence 0011223334443333221 00010 1122334566665532210 00 001223344555555544
Q ss_pred cCCCCCCchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCCCCCCCCCcccccC
Q 042981 697 YGGNIFPKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDDPSSSSSSSSVIAF 775 (876)
Q Consensus 697 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 775 (876)
.....-...+..+..|+.+.+....+.. ..+.... |+.+.+... +..++.. .+..+
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~-------------------aF~~c 319 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEE-------------------AFESC 319 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTT-------------------TTTTC
T ss_pred CcceeeccccccccccceeccCceeecc--ccccccccccccccccc--cceechh-------------------hhcCC
Confidence 3322112333455555555554432211 1123334 555555432 3333221 23356
Q ss_pred cccceeeccccccccccccccccccccCcccccceeeeccCccCCCCC-CCCCCCCCccEEEEecC
Q 042981 776 PKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP-DYLFQSTTLQKLSISYC 840 (876)
Q Consensus 776 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~ 840 (876)
.+|+.+.|.+ +++.+. ...+..+++|+.+.+..+ ++.++ ..|.++++|+.+++..+
T Consensus 320 ~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 6777776643 232221 235566777777777654 44443 45667777777777654
No 155
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.54 E-value=2.2e-07 Score=101.78 Aligned_cols=212 Identities=15% Similarity=0.032 Sum_probs=113.3
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccccc------CCeEEEEEeCCchhHH
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRN------FEKVIWVCVSDTFEEI 196 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~ 196 (876)
+..++||+++++++..++...-. ....+.+.|+|++|+||||+|+++++. .... --..+|+......+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 36799999999999998864311 124567899999999999999999973 3221 1235666655433322
Q ss_pred HH----------------------HHHHHHh-----------ccccccCCcc--ChhhHHhhhcc--C---CCCCEEEEE
Q 042981 197 RV----------------------ANAIIEG-----------LDDVWDGDYN--KWEPFFHCLKH--G---LHGSKILLT 236 (876)
Q Consensus 197 ~~----------------------~~~i~~~-----------lDdvw~~~~~--~~~~l~~~l~~--~---~~gs~iivT 236 (876)
.+ ...+... ||++..-... ..+.+...+.. . ..+..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 22 2222221 7777543211 11223222221 1 345678888
Q ss_pred cCchH--------HHHhhCCcceEeCCCCCcccc--ccCCC----cCCccchHHHHHHHHHHcC---CCc-hHHHHhhhh
Q 042981 237 TRNES--------VARMMGSTNIIFIEQLTEEES--FSGRS----FEDCEKLEPIGRKIARKCK---GLP-LAAKATGNL 298 (876)
Q Consensus 237 TR~~~--------v~~~~~~~~~~~l~~L~~~~~--~f~~~----~~~~~~l~~~~~~i~~~c~---GlP-lai~~~~~~ 298 (876)
|+... +...++ ...+.+++++.++. ++... .....--.+..+.++++++ |.| .|+.++..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 87652 222221 14789999998887 22110 0000111234566777777 998 333333332
Q ss_pred hc-------CCccHHHHHHHhhhhhccccccCCcchhhHhhcccCCCCchhHHHHHhHhc
Q 042981 299 LR-------SKSILKEWQKTLDSEMWKVEEIGQGLFAPLLLSYNDLPSNSMVKRCFSYCA 351 (876)
Q Consensus 299 L~-------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~lk~cfly~~ 351 (876)
.. ..-+.+.+..+++... ...+.-++..|+. +.+..++.++
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~~l~a~~ 300 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPL--HAKLVLLSIM 300 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHH
Confidence 21 1234566666555321 1234456677877 5555444444
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.53 E-value=1.2e-07 Score=103.75 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=96.5
Q ss_pred CCceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccC---CeEEEEEeCCchh-----
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFE----- 194 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~----- 194 (876)
+..++||+++++.+.+++..... ....+.+.|+|++|+||||||+++++ .....| ...+|+......+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998875311 12456889999999999999999997 343333 2456666433222
Q ss_pred -----------------HHHHHHHHHHh-----------ccccccCC----ccChhhHHhhhcc-CCCCCEEEEEcCchH
Q 042981 195 -----------------EIRVANAIIEG-----------LDDVWDGD----YNKWEPFFHCLKH-GLHGSKILLTTRNES 241 (876)
Q Consensus 195 -----------------~~~~~~~i~~~-----------lDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTTR~~~ 241 (876)
...+...+.+. +|+++.-. .+.+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 22222222211 78776421 2233334333322 233556788887654
Q ss_pred HHHhhC-------CcceEeCCCCCcccc--ccCC----CcCCccchHHHHHHHHHHcC---CCchHHH
Q 042981 242 VARMMG-------STNIIFIEQLTEEES--FSGR----SFEDCEKLEPIGRKIARKCK---GLPLAAK 293 (876)
Q Consensus 242 v~~~~~-------~~~~~~l~~L~~~~~--~f~~----~~~~~~~l~~~~~~i~~~c~---GlPlai~ 293 (876)
....+. ....+++++++.++. ++.. ......--.+..+.+++.++ |.|..+.
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 332221 124899999999887 2221 11111223455667777777 9887443
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=1.3e-08 Score=110.22 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=79.2
Q ss_pred CceEEEEeeecCCCCC-----ccccc-CCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCc
Q 042981 443 DKVRHLGLNFEGGASF-----PMSIH-GLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNL 516 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~-----~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~ 516 (876)
..++.++++.|.+... ...+. ..++|++|++.+|. +.......+...+++|+.|+|++|.+. ...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~L~~L~Ls~n~l~----~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQLNSLG----PEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-----CCHHHHHHTHHHHHTEEEEECCSSCCC----HHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-----CCHHHHHHHHHHHHhccHhhcCCCCCC----HHH
Confidence 4567777777776532 11222 23678888886554 333334444455667888888333321 001
Q ss_pred cccccccc-ccCcccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCCc----cccccccCcCCCceEecCCCC
Q 042981 517 IREIPENV-RKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDLR----ELPAGIGKLKKMRSLLNGGTP 586 (876)
Q Consensus 517 i~~lp~~i-~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~ 586 (876)
...+...+ ...++|++|+|++|.|+ .++..+..+++|++|+|++|.... .++..+...++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 11122222 23567888888888775 355556677788888888774321 234556667778888888775
Q ss_pred CC
Q 042981 587 LL 588 (876)
Q Consensus 587 ~~ 588 (876)
+.
T Consensus 223 i~ 224 (372)
T 3un9_A 223 AG 224 (372)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=1.4e-05 Score=87.41 Aligned_cols=315 Identities=12% Similarity=0.032 Sum_probs=179.9
Q ss_pred CceEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc
Q 042981 443 DKVRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP 521 (876)
Q Consensus 443 ~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp 521 (876)
.+++.+.+.. .+..+ ..+|.+|++|+++.+..+ ...+....|..+..|+.+.++. + +..+.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF~~c~~L~~i~~p~---------~-l~~i~ 132 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-------VKMIGRCTFSGCYALKSILLPL---------M-LKSIG 132 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-------CCEECTTTTTTCTTCCCCCCCT---------T-CCEEC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-------ceEccchhhcccccchhhcccC---------c-eeeec
Confidence 4688888864 35555 567899999999998543 2344556688999998887732 1 22222
Q ss_pred -cccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCC
Q 042981 522 -ENVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLT 599 (876)
Q Consensus 522 -~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 599 (876)
..+.++..+...... .+..+. ..+.++.+|+.+.+..+ ....-...|..+.+|+.+.+..+ +...-...+.++.
T Consensus 133 ~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 233444333222221 123332 35778888888888754 22222345677888888888766 3233334566677
Q ss_pred CCCccCceeecCccCCCccccccc-cccCCCCCCeeeeCcCCCCCcchhhhccCcccccCCceEEEeccCCccccchHHH
Q 042981 600 SLRTLEKFAMGGGVDDISTCRLES-LKNLQLLRECGIEGLSNVSHLDEDERLGLHNMKNLLRLSLEFDEEGEEGRRKNQQ 678 (876)
Q Consensus 600 ~L~~L~~~~~~~~~~~ls~~~l~~-L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 678 (876)
.|+.+....... .+.. .-....|+.+.+.. .........+.++..|+.+.+..+... .
T Consensus 209 ~L~~i~~~~~~~--------~i~~~~~~~~~l~~i~ip~-----~~~~i~~~~f~~~~~l~~~~~~~~~~~--------i 267 (394)
T 4fs7_A 209 LLENMEFPNSLY--------YLGDFALSKTGVKNIIIPD-----SFTELGKSVFYGCTDLESISIQNNKLR--------I 267 (394)
T ss_dssp TCCBCCCCTTCC--------EECTTTTTTCCCCEEEECT-----TCCEECSSTTTTCSSCCEEEECCTTCE--------E
T ss_pred ccceeecCCCce--------EeehhhcccCCCceEEECC-----CceecccccccccccceeEEcCCCcce--------e
Confidence 777663211000 0000 11123455554432 111111234667778888877654221 0
Q ss_pred HHhhCCCCCCccEEEEeecCCCCCCc-hhhcccCCcEEEEecCCCCCCC--CCCCccc-CceEeecCCCCceEeCccccc
Q 042981 679 LLEALQPPLNVKELGIVSYGGNIFPK-WLTSLTNLRDLRLKSCVICEHF--PPLGKLP-LEKLTLYGLYGVKRVGNEFLG 754 (876)
Q Consensus 679 ~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~l--p~l~~Lp-L~~L~L~~~~~l~~~~~~~~~ 754 (876)
....+..+..++.+...... ++. .+..+.+|+.+.+.++- ..+ ..+.... |+.+.|... +..++..
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~i--~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~--- 337 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDSV--KFIGEEAFESCTSLVSIDLPYL--VEEIGKR--- 337 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTTC--CEECTTTTTTCTTCCEECCCTT--CCEECTT---
T ss_pred eccccccccccceeccCcee---ecccccccccccccccccccc--ceechhhhcCCCCCCEEEeCCc--ccEEhHH---
Confidence 01123345566666554322 232 34578899999997652 222 2356667 888888542 4444432
Q ss_pred CCCCCCCCCCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCCCCCCCCCCccE
Q 042981 755 IEGSSEDDPSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLPDYLFQSTTLQK 834 (876)
Q Consensus 755 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 834 (876)
.+.+|.+|+.+.+... +..+. ...+..+++|+.++|..+ +..+...|.++++|+.
T Consensus 338 ----------------aF~~c~~L~~i~lp~~--l~~I~-----~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 338 ----------------SFRGCTSLSNINFPLS--LRKIG-----ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp ----------------TTTTCTTCCEECCCTT--CCEEC-----TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred ----------------hccCCCCCCEEEECcc--ccEeh-----HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 2446889999987542 43332 346778999999999765 4555567888888876
Q ss_pred E
Q 042981 835 L 835 (876)
Q Consensus 835 L 835 (876)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 5
No 159
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.41 E-value=2.6e-07 Score=80.42 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHHhHhhhhhHhhhHHHHHH
Q 042981 3 QDKVVTFWLDQLKDASYDMEDVLDEWVFARL 33 (876)
Q Consensus 3 ~~~~~~~wl~~lr~~~yd~eD~lD~~~~~~~ 33 (876)
+|++++.|+++|||+|||+|||||+|.++..
T Consensus 53 ~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 53 LDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999873
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=3.9e-07 Score=98.20 Aligned_cols=101 Identities=22% Similarity=0.119 Sum_probs=83.2
Q ss_pred EEeeec-CCCCCcccccCCCcceEEeeec-CCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-ccc
Q 042981 448 LGLNFE-GGASFPMSIHGLNRLRTLLIYF-QSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENV 524 (876)
Q Consensus 448 L~l~~~-~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i 524 (876)
++.+.+ .+..+|. +..+++|+.|++.+ |. ...+++..|..+++|++|+| ++|.+..+| ..|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l---------~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTI---------VKSGLRFVAPDAF 76 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEEC---------CSSCCCEECTTGG
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEEC---------CCCccceeCHHHh
Confidence 456666 7888888 99999999999975 65 45566677999999999999 777777766 467
Q ss_pred ccCcccCeeeccCccccccchhhccCCcccEEeecCCCCC
Q 042981 525 RKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDL 564 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l 564 (876)
.+|++|++|+|++|.|+.+|..+.....|++|+|.+|...
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999999999999999987655555999999998543
No 161
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.38 E-value=9.3e-07 Score=96.87 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=101.8
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccC-CeEEEEEeCCchhHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVANAI 202 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 202 (876)
+.++||+++++++..++...........+.+.|+|..|+||||||+.+++. ..... ...+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999887531100123348999999999999999999973 33321 245677755544433333332
Q ss_pred HH-------------------------h--------ccccccCCccChhhHHhhhccCC----CCCEEEEEcCchHHHHh
Q 042981 203 IE-------------------------G--------LDDVWDGDYNKWEPFFHCLKHGL----HGSKILLTTRNESVARM 245 (876)
Q Consensus 203 ~~-------------------------~--------lDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTTR~~~v~~~ 245 (876)
+. . ||+++.-+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 21 1 78886654444555555443211 36678888887654433
Q ss_pred hC-------CcceEeCCCCCcccc--ccCCC----cCCccchHHHHHHHHHHc---------CCCchHHHH
Q 042981 246 MG-------STNIIFIEQLTEEES--FSGRS----FEDCEKLEPIGRKIARKC---------KGLPLAAKA 294 (876)
Q Consensus 246 ~~-------~~~~~~l~~L~~~~~--~f~~~----~~~~~~l~~~~~~i~~~c---------~GlPlai~~ 294 (876)
+. ....+.+.+++.++. ++... .....--.+....+++.+ .|.|-.+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 22 123799999999886 21110 001112245677888888 787654433
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1e-06 Score=93.73 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=104.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-cC-CeEEEEEeCCchhH---HHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSDTFEE---IRV 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~---~~~ 198 (876)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++. +.. .+ ...+++..++.... .++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHHHHHH
Confidence 46999999999999988643 2233889999999999999999873 321 11 12444554443332 233
Q ss_pred HHHHH-------Hh------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHH-hhCCcceEeCCCCCcccc-
Q 042981 199 ANAII-------EG------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VAR-MMGSTNIIFIEQLTEEES- 262 (876)
Q Consensus 199 ~~~i~-------~~------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~~~~~~l~~L~~~~~- 262 (876)
.+.+. .. +||++.-....++.+...+.....+.++|+||+... +.. .......+++.+++.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 33333 11 888876554556667777766666788888887643 211 122345899999999887
Q ss_pred -ccCCCc--CCccchHHHHHHHHHHcCCCch-HHHHhhh
Q 042981 263 -FSGRSF--EDCEKLEPIGRKIARKCKGLPL-AAKATGN 297 (876)
Q Consensus 263 -~f~~~~--~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~ 297 (876)
++.... ....--.+....+++.|+|.|. |+..+..
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222110 0011123566789999999995 4444443
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=4.8e-07 Score=97.89 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=97.3
Q ss_pred CCceEEEEeeecCCCCC-c-ccccCCCcceEEeeecCCCCCCCCchhh---hHHHh-ccCCcceEEecCccccccCCCCC
Q 042981 442 GDKVRHLGLNFEGGASF-P-MSIHGLNRLRTLLIYFQSPSNPSLNSSI---LSELF-SKLACFRALVIGQRNFIFDPYPN 515 (876)
Q Consensus 442 ~~~lr~L~l~~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~---~~~~~-~~l~~Lr~L~L~~~~~~~~~~~~ 515 (876)
...++.|+++.|.+... . .-...+++|+.|++.+|. +.... +...+ ...+.|+.|+|++|.+. ..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~----~~ 170 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-----LGPEACKDLRDLLLHDQCQITTLRLSNNPLT----AA 170 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCH----HH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-----CCHHHHHHHHHHHHhcCCccceeeCCCCCCC----hH
Confidence 36799999999987532 1 122345689999998775 22222 22222 35788999999444331 11
Q ss_pred cccccccccccCcccCeeeccCcccc-----ccchhhccCCcccEEeecCCCCCc----cccccccCcCCCceEecCCCC
Q 042981 516 LIREIPENVRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIRWCEDLR----ELPAGIGKLKKMRSLLNGGTP 586 (876)
Q Consensus 516 ~i~~lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~~~ 586 (876)
....++..+..+++|++|+|++|.|+ .++..+...++|++|+|++|.... .++..+...++|++|++++|.
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 12235666778899999999999987 456778888999999999995432 244556678999999999997
Q ss_pred CCcc
Q 042981 587 LLKY 590 (876)
Q Consensus 587 ~~~~ 590 (876)
+...
T Consensus 251 i~~~ 254 (372)
T 3un9_A 251 LSSE 254 (372)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 6543
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=3.5e-06 Score=89.77 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=103.1
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccccc-C-CeEEEEEeCCchhHHH---H
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRN-F-EKVIWVCVSDTFEEIR---V 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~---~ 198 (876)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++. +... + ...+.+..++...... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHHHHH
Confidence 45999999999999888653 3334889999999999999999873 2211 1 1234445444333222 2
Q ss_pred HHHHHHh------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHHh-hCCcceEeCCCCCcccc--
Q 042981 199 ANAIIEG------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VARM-MGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 199 ~~~i~~~------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~-- 262 (876)
....... +|+++.-....++.+...+.....+.++|+||.... +... ......+++.+++.++.
T Consensus 97 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 97 VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHH
T ss_pred HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHH
Confidence 2222211 888876655566777777776667788998887643 1111 11234789999998886
Q ss_pred ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhhh
Q 042981 263 FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATGN 297 (876)
Q Consensus 263 ~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 297 (876)
++.... ....--.+....|++.++|.|..+..+..
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 177 RLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 221100 01111235667888999999886554433
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.1e-06 Score=82.49 Aligned_cols=90 Identities=11% Similarity=0.168 Sum_probs=65.8
Q ss_pred CcccceeeccccccccccccccccccccCcccccceeeeccCccCCCC-CCCCCCC----CCccEEEEecCCCchhhccc
Q 042981 775 FPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVL-PDYLFQS----TTLQKLSISYCPIMEELRIL 849 (876)
Q Consensus 775 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l----~~L~~L~l~~~~~l~~l~~~ 849 (876)
-.+|+.|++++|. +.+..+ ..+..+++|++|+|++|..++.- -..+..+ ++|++|+|++|+.+++-...
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCcCCC-ccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 3479999999985 665444 34568999999999999866621 0112222 47999999999988774332
Q ss_pred cccCCCCCCCcCEEEEccCCCCCC
Q 042981 850 EDHRTTDIPRLSSLEIEYCPKLNV 873 (876)
Q Consensus 850 ~~~~~~~lp~L~~L~i~~c~~L~~ 873 (876)
.+..+|+|+.|++++||+++.
T Consensus 134 ---~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ---ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ---HGGGCTTCCEEEEESCTTCCC
T ss_pred ---HHhcCCCCCEEECCCCCCCCc
Confidence 345789999999999998874
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00015 Score=79.20 Aligned_cols=111 Identities=10% Similarity=0.075 Sum_probs=66.8
Q ss_pred ccccCCC-cceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-cccccCcccCeeeccC
Q 042981 460 MSIHGLN-RLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-ENVRKLIHLKYLNLSE 537 (876)
Q Consensus 460 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~~i~~L~~Lr~L~Ls~ 537 (876)
.+|.+++ .|+++.+... ...+...+|.++.+|+.+.++.+. ...+..+. ..|..+..|+.+.+..
T Consensus 57 ~aF~~~~~~L~sI~iP~s-------vt~Ig~~AF~~C~~L~~i~~~~n~------p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-------VTEIGSNAFYNCTSLKRVTIQDNK------PSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-------CCEECTTTTTTCTTCCEEEEGGGC------CCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred hhccCCCCcCEEEEECCC-------eeEEhHHHhhCCccCceEeecCCC------CCeeeEechhhchhcccceeeccCC
Confidence 4566664 5788877432 234455668888888888873321 12344454 3456677777777765
Q ss_pred ccccccch-hhccCCcccEEeecCCCCCccccccccCcCCCceEecCCC
Q 042981 538 LCIERLPK-TLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGT 585 (876)
Q Consensus 538 ~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 585 (876)
+ ++.++. .+..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+
T Consensus 124 ~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 124 S-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp T-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred c-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 4 555553 4677788888888643 22222334567777777777654
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.4e-06 Score=93.27 Aligned_cols=59 Identities=17% Similarity=0.041 Sum_probs=28.4
Q ss_pred ccccCcccCeeeccCccccccchhhccCCcccEEeecCCCCCcccccccc--CcCCCceEecC
Q 042981 523 NVRKLIHLKYLNLSELCIERLPKTLCELYNLQKLDIRWCEDLRELPAGIG--KLKKMRSLLNG 583 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~--~L~~L~~L~l~ 583 (876)
.+..+++|+.|+|++|.-..+|. + .+++|++|+|..|.........+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33455566666665553123333 2 256666666665532221112222 56666666654
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.03 E-value=6.2e-06 Score=87.71 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=98.5
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
.+++|++..++.+..++...... ......+.|+|..|+||||+|+++++ .... ...++..+.......+...+-
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHHHHHH
Confidence 56999999999888877632110 11335678999999999999999987 3322 233454444333444444433
Q ss_pred Hh--------ccccccCCccChhhHHhhhccCC------------------CCCEEEEEcCchH-HHHhh-CC-cceEeC
Q 042981 204 EG--------LDDVWDGDYNKWEPFFHCLKHGL------------------HGSKILLTTRNES-VARMM-GS-TNIIFI 254 (876)
Q Consensus 204 ~~--------lDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iivTTR~~~-v~~~~-~~-~~~~~l 254 (876)
.. +|++..-.....+.+...+.... .+.++|.||.... +...+ .. ...+++
T Consensus 86 ~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred HhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec
Confidence 31 78886544334444554443321 2345666666432 11111 11 258899
Q ss_pred CCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhhhh
Q 042981 255 EQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATGNL 298 (876)
Q Consensus 255 ~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 298 (876)
.+++.+|. ++.... ....--.+....+++.+.|.|-.+..+...
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99998886 211100 001112456788999999999877665543
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=5.1e-06 Score=89.01 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=38.4
Q ss_pred ccchhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccC--CCCCCCCccC
Q 042981 542 RLPKTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGI--SKLTSLRTLE 605 (876)
Q Consensus 542 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~ 605 (876)
.++..+..+++|+.|+|++|... .+|. + .+++|++|++..|.+.......+ ..+++|+.|.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEE
Confidence 45566778899999999887333 3444 4 37889999988775432222222 2456666663
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=4.3e-06 Score=80.59 Aligned_cols=122 Identities=13% Similarity=-0.032 Sum_probs=74.0
Q ss_pred ccccCCCcceEEeeecC-CCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCc
Q 042981 460 MSIHGLNRLRTLLIYFQ-SPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSEL 538 (876)
Q Consensus 460 ~~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~ 538 (876)
..+...+.|++|++.+| .... .....+...+...+.|++|+|++|.+. ......+...+...++|++|+|++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~i~----~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTRSN----DPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSCCC----HHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCCCC----hHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34556778888888665 3110 001123344566778888888444331 1111234455556677888888888
Q ss_pred ccc-----ccchhhccCCcccEEee--cCCCCCcc----ccccccCcCCCceEecCCCCC
Q 042981 539 CIE-----RLPKTLCELYNLQKLDI--RWCEDLRE----LPAGIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 539 ~i~-----~lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~i~~L~~L~~L~l~~~~~ 587 (876)
.|. .+...+...++|++|+| ++|..... +...+...++|++|++++|.+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 877 35666777788888888 66643322 334455667888888887754
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=0.00023 Score=77.74 Aligned_cols=142 Identities=12% Similarity=0.099 Sum_probs=92.8
Q ss_pred eEEEEeeecCCCCC-cccccCCCcceEEeeecCCCCCCCCchhhhHHHhccCCcceEEecCccccccCCCCCcccccc-c
Q 042981 445 VRHLGLNFEGGASF-PMSIHGLNRLRTLLIYFQSPSNPSLNSSILSELFSKLACFRALVIGQRNFIFDPYPNLIREIP-E 522 (876)
Q Consensus 445 lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp-~ 522 (876)
++.+.+..+ ++.+ ..+|.+|.+|+++.+..+.. .....+...+|..+..|+.+.+ .. .+..++ .
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p---~~l~~Ig~~aF~~c~~L~~i~~---------~~-~~~~I~~~ 131 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP---SCVKKIGRQAFMFCSELTDIPI---------LD-SVTEIDSE 131 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC---CCCCEECTTTTTTCTTCCBCGG---------GT-TCSEECTT
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC---CeeeEechhhchhcccceeecc---------CC-ccceehhh
Confidence 666776543 4444 67889999999999976531 1123445566888999998887 22 244454 4
Q ss_pred ccccCcccCeeeccCccccccc-hhhccCCcccEEeecCCCCCccccccccCcCCCceEecCCCCCCccCCccCCCCCCC
Q 042981 523 NVRKLIHLKYLNLSELCIERLP-KTLCELYNLQKLDIRWCEDLRELPAGIGKLKKMRSLLNGGTPLLKYMPIGISKLTSL 601 (876)
Q Consensus 523 ~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 601 (876)
.+..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..+........+|+.+.+..+ ....-...+..+.+|
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhcccc
Confidence 4678899999999765 45554 46788999999999764 4555444334567888888765 223333445555555
Q ss_pred Ccc
Q 042981 602 RTL 604 (876)
Q Consensus 602 ~~L 604 (876)
...
T Consensus 208 ~~~ 210 (394)
T 4gt6_A 208 STI 210 (394)
T ss_dssp CEE
T ss_pred cee
Confidence 543
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=3.9e-05 Score=74.28 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=37.8
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..++||+++++++.+.+... ..+.+.|+|.+|+||||+|+++++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998653 3355789999999999999999873
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.83 E-value=2.7e-05 Score=84.50 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=101.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccccc-------------------CCeE
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRN-------------------FEKV 184 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 184 (876)
.+++|++..++.+...+.... ....+.|+|..|+||||+|+.+.+....... +...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 359999999999999886532 2357789999999999999998763211110 1112
Q ss_pred EEEEeCCc---hhHHHHHHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HH-HhhCCc
Q 042981 185 IWVCVSDT---FEEIRVANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VA-RMMGST 249 (876)
Q Consensus 185 ~wv~vs~~---~~~~~~~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~-~~~~~~ 249 (876)
+.+..+.. -+...+...+... +||+..-+...++.+...+.....+..+|++|.... +. ......
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 33333221 1233444333211 788866555566777777766656777777776442 21 112234
Q ss_pred ceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 250 NIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 250 ~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
..+++.+++.++. +..... ....--.+....|++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 6889999998886 221100 0011123456788899999998776554
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=5.4e-06 Score=77.69 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=55.7
Q ss_pred ccCcccceeeccccccccccccccccccccCc----ccccceeeeccCccCCC--CCCCCCCCCCccEEEEecCCCchhh
Q 042981 773 IAFPKLKSLHIGAMEELEEWNYRITRKENISI----MPRLSSLTIWYCPRLRV--LPDYLFQSTTLQKLSISYCPIMEEL 846 (876)
Q Consensus 773 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~~l~~l 846 (876)
..+++|+.|+|++|..+++..+ ..+.. .++|++|+|++|+.++. +. .+.++++|+.|+|++|+.+++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 3688888888888887777654 22333 35899999999987662 22 3456899999999999987764
Q ss_pred ccccccCCCCCCCcCE
Q 042981 847 RILEDHRTTDIPRLSS 862 (876)
Q Consensus 847 ~~~~~~~~~~lp~L~~ 862 (876)
.......-..+|+++.
T Consensus 156 gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 156 EKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 2211111235666543
No 175
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=4.8e-06 Score=80.24 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=72.9
Q ss_pred hhhhHHHhccCCcceEEecCcc-ccccCCCCCcccccccccccCcccCeeeccCcccc-----ccchhhccCCcccEEee
Q 042981 485 SSILSELFSKLACFRALVIGQR-NFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDI 558 (876)
Q Consensus 485 ~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L 558 (876)
...+..++...+.|+.|+|++| .+ .......+...+...++|++|+|++|.|. .+...+...++|++|+|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCC----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 3445666888999999999544 33 11122345566777889999999999987 35666777889999999
Q ss_pred cCCCCCcc----ccccccCcCCCceEec--CCCCCC
Q 042981 559 RWCEDLRE----LPAGIGKLKKMRSLLN--GGTPLL 588 (876)
Q Consensus 559 ~~~~~l~~----lp~~i~~L~~L~~L~l--~~~~~~ 588 (876)
++|..... +...+...++|++|++ ++|.+.
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 99954322 5566778889999999 777653
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.79 E-value=1.6e-05 Score=80.33 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=75.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH-HHHHHHHHHh----ccccccCCccC--hhhHHh
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVANAIIEG----LDDVWDGDYNK--WEPFFH 222 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~----lDdvw~~~~~~--~~~l~~ 222 (876)
..+.+.|+|.+|+||||||+.+++ ........+.|+..++..+. .+....+-.. +||+....... .+.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~ 128 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFD 128 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHH
Confidence 346788999999999999999987 33333345667776553221 0111111111 78886543222 233444
Q ss_pred hhccC-CCCC-EEEEEcCch---------HHHHhhCCcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCC
Q 042981 223 CLKHG-LHGS-KILLTTRNE---------SVARMMGSTNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKG 287 (876)
Q Consensus 223 ~l~~~-~~gs-~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~G 287 (876)
.+... ..|. +||+||+.. .+...+.....+++.+++.++. ++.... ....--.+....+++.++|
T Consensus 129 ~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 129 LYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp HHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 33221 1222 477777632 2222222236889999998776 111100 0011123455677777777
Q ss_pred CchHHHH
Q 042981 288 LPLAAKA 294 (876)
Q Consensus 288 lPlai~~ 294 (876)
.+-.+..
T Consensus 209 ~~r~l~~ 215 (242)
T 3bos_A 209 DLRTLFD 215 (242)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6654443
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.78 E-value=2.7e-05 Score=71.58 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=64.1
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-cccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
+++|+...++++.+.+..... .. .-|-|+|..|+|||++|+.+++...- ...| + +..+...+.... ...+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~~-~~~~ 72 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TD-IAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQL-NDFI 72 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CC-SCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSCH-HHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC-CCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchhh-hcHH
Confidence 578999999999988865322 12 23679999999999999999974211 2222 2 554443221111 1112
Q ss_pred Hh-------ccccccCCccChhhHHhhhccCCCCCEEEEEcCc
Q 042981 204 EG-------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRN 239 (876)
Q Consensus 204 ~~-------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 239 (876)
.. +|++..-.......+...+.......+||.||..
T Consensus 73 ~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 73 ALAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHHTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred HHcCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 21 8888766555556666666554445677777764
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=9.9e-06 Score=82.08 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=16.2
Q ss_pred cccCcccCeeeccCccccccchhhccCC--cccEEeecCC
Q 042981 524 VRKLIHLKYLNLSELCIERLPKTLCELY--NLQKLDIRWC 561 (876)
Q Consensus 524 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~ 561 (876)
+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred HhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 34445555555555544443 1222222 4444444444
No 179
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=4.2e-05 Score=77.43 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=61.9
Q ss_pred ccCcccCeeeccCcccccc---chhhccCCcccEEeecCCCCCccccccccCcC--CCceEecCCCCCCccCCc------
Q 042981 525 RKLIHLKYLNLSELCIERL---PKTLCELYNLQKLDIRWCEDLRELPAGIGKLK--KMRSLLNGGTPLLKYMPI------ 593 (876)
Q Consensus 525 ~~L~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 593 (876)
.++++|+.|+|++|.|+.+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678899999999988754 4667899999999999984 5544 3355555 999999999988776662
Q ss_pred -cCCCCCCCCccCce
Q 042981 594 -GISKLTSLRTLEKF 607 (876)
Q Consensus 594 -~i~~l~~L~~L~~~ 607 (876)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25678889888543
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.0013 Score=71.24 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=33.6
Q ss_pred ccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCC-CCCCCCCCccEEEEec
Q 042981 773 IAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP-DYLFQSTTLQKLSISY 839 (876)
Q Consensus 773 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 839 (876)
..+++|+.+.+.+. .++.+. ...+..+++|+.+.|..+ ++.++ ..|.++++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLE-----PRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEEC-----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-ccceeh-----hhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 35677777766432 122221 235566777777777543 44443 3566677777777644
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.61 E-value=4.8e-05 Score=80.49 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=95.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc-cccCC-eEEEEEeCCch---hHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV-KRNFE-KVIWVCVSDTF---EEIRV 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~---~~~~~ 198 (876)
.+++|++..++.+.+++... ....+-|+|..|+||||+|+.+++. + ...+. ..+.+..+... .....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTTTSSHH
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChHHHHHH
Confidence 45899999999988877642 2333889999999999999999873 2 11111 12334443321 22233
Q ss_pred HHHHHHh------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHH-hhCCcceEeCCCCCcccc--
Q 042981 199 ANAIIEG------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VAR-MMGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 199 ~~~i~~~------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~~~~~~l~~L~~~~~-- 262 (876)
....... +|++..-.....+.+...+.....+.++|+||.... +.. .......+++.+++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 168 (319)
T 2chq_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (319)
T ss_dssp HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHH
T ss_pred HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHH
Confidence 3333311 788765544445666666666556778888876543 211 122345889999998876
Q ss_pred c----cCCCcCCccchHHHHHHHHHHcCCCchHHHH
Q 042981 263 F----SGRSFEDCEKLEPIGRKIARKCKGLPLAAKA 294 (876)
Q Consensus 263 ~----f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 294 (876)
+ +.... ..--.+....+++.++|-+-.+..
T Consensus 169 ~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 169 RLLEICEKEG--VKITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHHHHTTC--CCBCHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 11111 111234566777888887765443
No 182
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.52 E-value=4.7e-05 Score=69.74 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=59.9
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIE 204 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 204 (876)
+++|++..++++.+.+..... ...-|-|+|..|+|||++|+.+++... -|+.+.-..-.......+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMPMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhhhhHHH
Confidence 588999999988888764321 112367999999999999999987322 23333221111122333333
Q ss_pred h-------ccccccCCccChhhHHhhhccC-CCCCEEEEEcC
Q 042981 205 G-------LDDVWDGDYNKWEPFFHCLKHG-LHGSKILLTTR 238 (876)
Q Consensus 205 ~-------lDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTTR 238 (876)
. +|++..-..+....+...+... ..+.+||.||.
T Consensus 73 ~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 73 KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3 7888665544455555555443 34567887775
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.41 E-value=0.00027 Score=67.76 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=37.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|++.+++.+.+.+... ..+.+.|+|..|+||||+|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988652 234568999999999999999987
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=0.00025 Score=69.24 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=48.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH----------HHHHHHHHHh----ccccccCCccCh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE----------IRVANAIIEG----LDDVWDGDYNKW 217 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~----------~~~~~~i~~~----lDdvw~~~~~~~ 217 (876)
+.+.|+|.+|+||||||+++++ ........++|++++.-... ..+...+... |||++......|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~ 132 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSW 132 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CC
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHH
Confidence 6788999999999999999998 44444445667765432110 1111222111 899976544444
Q ss_pred hh--HHh-hhccC-CCCCEEEEEcCc
Q 042981 218 EP--FFH-CLKHG-LHGSKILLTTRN 239 (876)
Q Consensus 218 ~~--l~~-~l~~~-~~gs~iivTTR~ 239 (876)
.. +.. .+... ..+.++|+||..
T Consensus 133 ~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 133 VRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp GGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 32 322 22221 235678888874
No 185
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=0.00029 Score=75.70 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=95.0
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCC-eEEEEEeCCchhHHH---HH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIR---VA 199 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~---~~ 199 (876)
.+++|+++.++.+..++.... ...+.|+|..|+||||+|+.+.+.-.....+. ....+..++...... ..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH
Confidence 468999999999999886532 22378999999999999999987321111111 233344443222221 12
Q ss_pred HHHHH----------------------hccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHHh-hCCcceEeCC
Q 042981 200 NAIIE----------------------GLDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VARM-MGSTNIIFIE 255 (876)
Q Consensus 200 ~~i~~----------------------~lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~ 255 (876)
..... -+|++..-.......+...+.......++|++|.... +... ......+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 22211 0677654443445556666665555677777775432 2111 1123478899
Q ss_pred CCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHHHh
Q 042981 256 QLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAKAT 295 (876)
Q Consensus 256 ~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~ 295 (876)
+++.++. +..... ....--.+....|++.++|-|-.+..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9998886 111100 001112456788889999988765443
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.30 E-value=9.2e-05 Score=79.04 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=91.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
.+++|++..++++..++...... ......|-|+|..|+|||++|+++++ .....| +.+..+.......+ ...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~~~~-~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKSGDL-AAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSHHHH-HHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccchhHH-HHHH
Confidence 46999999999998888753110 12345678999999999999999987 333332 23333222222222 2333
Q ss_pred Hh--------ccccccCCccChhhHHhhhccCC------------------CCCEEEEEcCchHH-HHh-hCC-cceEeC
Q 042981 204 EG--------LDDVWDGDYNKWEPFFHCLKHGL------------------HGSKILLTTRNESV-ARM-MGS-TNIIFI 254 (876)
Q Consensus 204 ~~--------lDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iivTTR~~~v-~~~-~~~-~~~~~l 254 (876)
.. ||++..-.......+...+.... ++-++|.+|..... ... ... ...+++
T Consensus 102 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp HTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred HhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeC
Confidence 32 78887654444445555554322 12456666554321 111 111 368899
Q ss_pred CCCCcccc--ccCCCc--CCccchHHHHHHHHHHcCCCchHHH
Q 042981 255 EQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 255 ~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
.+++.++. ++.... ....--.+....+++.+.|.|-.+.
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 99988876 211110 0111123456677778888874443
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.00073 Score=74.34 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=84.4
Q ss_pred CceeeccchH---HHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC--chhHHHH
Q 042981 124 GEVCGRVDEK---NELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRV 198 (876)
Q Consensus 124 ~~~vGr~~~~---~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~ 198 (876)
.+++|.+..+ ..+...+... ....+.|+|..|+||||+|+.+++ .....|- -+.... .-+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~---~l~a~~~~~~~ir~~ 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANADVE---RISAVTSGVKEIREA 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEEE---EEETTTCCHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCeE---EEEeccCCHHHHHHH
Confidence 4588887766 5566666532 446789999999999999999997 3333331 122211 1122233
Q ss_pred HHHHHHh----------ccccccCCccChhhHHhhhccCCCCCEEE-EEcCchH--H-HHhhCCcceEeCCCCCcccc--
Q 042981 199 ANAIIEG----------LDDVWDGDYNKWEPFFHCLKHGLHGSKIL-LTTRNES--V-ARMMGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 199 ~~~i~~~----------lDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~--v-~~~~~~~~~~~l~~L~~~~~-- 262 (876)
+...... +|++..-+....+.+...+..+ .-.+| .||.+.. + ........++.+++++.++-
T Consensus 95 ~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~ 172 (447)
T 3pvs_A 95 IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQ 172 (447)
T ss_dssp HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHH
Confidence 3222211 8888765555566666666652 12333 3555542 2 12223456889999998876
Q ss_pred ----ccCC---Cc--CCccchHHHHHHHHHHcCCCchHHH
Q 042981 263 ----FSGR---SF--EDCEKLEPIGRKIARKCKGLPLAAK 293 (876)
Q Consensus 263 ----~f~~---~~--~~~~~l~~~~~~i~~~c~GlPlai~ 293 (876)
++.. .. ....--.+....+++.++|-+-.+.
T Consensus 173 il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 173 VLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1111 10 1111223456677777888665443
No 188
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00046 Score=71.66 Aligned_cols=78 Identities=6% Similarity=0.002 Sum_probs=54.2
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCcccccc-----CC--eEEEEEeCCchhHHH
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRN-----FE--KVIWVCVSDTFEEIR 197 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~--~~~wv~vs~~~~~~~ 197 (876)
.+.||+++.++|...|...-. .+....+-|+|.+|+|||++|++|.+. +... .. ..+.|....-.+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHH
Confidence 388999999999988876432 235678899999999999999999984 3221 11 245555555556666
Q ss_pred HHHHHHHhc
Q 042981 198 VANAIIEGL 206 (876)
Q Consensus 198 ~~~~i~~~l 206 (876)
+...|+++|
T Consensus 97 ~~~~I~~~L 105 (318)
T 3te6_A 97 LYEKIWFAI 105 (318)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666665
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00031 Score=67.17 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=47.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH----------HHHHHHHHh----ccccccCCccC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI----------RVANAIIEG----LDDVWDGDYNK 216 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----------~~~~~i~~~----lDdvw~~~~~~ 216 (876)
-+.+.|+|..|+||||||+++++.......+ .++++++.+-.+.. .....+.+. |||++....+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~ 116 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSD 116 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCH
Confidence 4688999999999999999998732212222 23444443321110 111111111 89997433344
Q ss_pred hhh--HHhhhccC-CCCCEEEEEcCc
Q 042981 217 WEP--FFHCLKHG-LHGSKILLTTRN 239 (876)
Q Consensus 217 ~~~--l~~~l~~~-~~gs~iivTTR~ 239 (876)
|.. +...+... ..|..||+||..
T Consensus 117 ~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 117 WQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 542 33333321 246788888864
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.18 E-value=0.00077 Score=70.76 Aligned_cols=137 Identities=14% Similarity=0.150 Sum_probs=72.5
Q ss_pred ceeeccchHHHHHHHhhccC---------CcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCC--eEEEEEeCCc-
Q 042981 125 EVCGRVDEKNELLSKLLFES---------SEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDT- 192 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~- 192 (876)
+++|.+..++.+.+.+.... -........+.|+|.+|+|||++|+.+++.-....... ..+.+..++-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 47888888888776654210 00012345688999999999999998876321111111 2222322211
Q ss_pred ---h-hHHHHHHHHHHh-------ccccccC---------CccChhhHHhhhccCCCCCEEEEEcCchHHHHh--hC---
Q 042981 193 ---F-EEIRVANAIIEG-------LDDVWDG---------DYNKWEPFFHCLKHGLHGSKILLTTRNESVARM--MG--- 247 (876)
Q Consensus 193 ---~-~~~~~~~~i~~~-------lDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~--~~--- 247 (876)
+ ....-...++.. +|++..- .......+...+.....+..||.||........ ..
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 1 111122333332 7888632 223345566666666667788888865432111 01
Q ss_pred ---CcceEeCCCCCccc
Q 042981 248 ---STNIIFIEQLTEEE 261 (876)
Q Consensus 248 ---~~~~~~l~~L~~~~ 261 (876)
-...+++++++.++
T Consensus 192 ~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp HHHEEEEEEECCCCHHH
T ss_pred HHhCCeEEEcCCcCHHH
Confidence 12566777766544
No 191
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00031 Score=77.41 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=62.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCC--eEEEEEeCCchhHHHHHH-----------HHHH-h-----cccccc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAN-----------AIIE-G-----LDDVWD 211 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~-----------~i~~-~-----lDdvw~ 211 (876)
...+.|+|.+|+||||||+++++ .+...|. .++++..+.- ..++.. .-.. . +||+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHH--HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccc
Confidence 56789999999999999999998 4444442 3445554331 111111 1112 2 788865
Q ss_pred CCc--cChhhHHhhhcc-CCCCCEEEEEcCc---------hHHHHhhCCcceEeCCCCCcccc
Q 042981 212 GDY--NKWEPFFHCLKH-GLHGSKILLTTRN---------ESVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 212 ~~~--~~~~~l~~~l~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
-.. ...+.+...+.. ...|..||+||.+ ..+...+....++.+++++.++-
T Consensus 206 l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp GSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHH
Confidence 432 122334444432 2357789999876 23333343346778888877665
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.05 E-value=0.0019 Score=66.30 Aligned_cols=47 Identities=21% Similarity=0.136 Sum_probs=34.1
Q ss_pred CceeeccchHHHHHHH-------hhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSK-------LLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~-------L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.....++++.. +.... ....+.+-|+|..|+|||++|+++++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3477877776666663 22111 23567888999999999999999997
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.00062 Score=70.54 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=38.2
Q ss_pred CCceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|.++.++++.+.+...... +-...+-+.|+|.+|+||||||+++++
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 356999999999998887532000 002345688999999999999999987
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.00 E-value=0.00071 Score=71.59 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=78.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH---HH
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV---AN 200 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~---~~ 200 (876)
++++|.+..++.+.+++.... ...++-+.|..|+||||+|+++.+ ... ...+.+..+. .....+ ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~-~~~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSD-CKIDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTT-CCHHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEcccc-cCHHHHHHHHH
Confidence 569999999999999887432 346777788899999999999987 332 1234455444 223222 22
Q ss_pred HHHHh-----------ccccccCC-ccChhhHHhhhccCCCCCEEEEEcCchH-----HHHhhCCcceEeCCCCCccc
Q 042981 201 AIIEG-----------LDDVWDGD-YNKWEPFFHCLKHGLHGSKILLTTRNES-----VARMMGSTNIIFIEQLTEEE 261 (876)
Q Consensus 201 ~i~~~-----------lDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~ 261 (876)
..... +|++..-. .+..+.+...+.....+.++|+||.... +... ...+++++++.++
T Consensus 95 ~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e 169 (324)
T 3u61_B 95 NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDED 169 (324)
T ss_dssp HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHH
T ss_pred HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHH
Confidence 22221 78886543 3344555555554445678888887543 2222 3478898888776
No 195
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.99 E-value=0.0018 Score=73.16 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=90.6
Q ss_pred CceeeccchHHHHHHHhhccCC-----------cCCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS-----------EQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 192 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 192 (876)
.+++|++..++++.+++..... .+....+.+-|+|++|+||||+|+.+++. .. + ..+.+..++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCc
Confidence 5699999999999999875110 00113468899999999999999999973 31 2 2334444443
Q ss_pred hhHHHHHHHHHH----------------------h------ccccccCCc---cChhhHHhhhccCCCCCEEEEEcCchH
Q 042981 193 FEEIRVANAIIE----------------------G------LDDVWDGDY---NKWEPFFHCLKHGLHGSKILLTTRNES 241 (876)
Q Consensus 193 ~~~~~~~~~i~~----------------------~------lDdvw~~~~---~~~~~l~~~l~~~~~gs~iivTTR~~~ 241 (876)
..... ....+. . +|++..-.. ..+..+...+... +..||+++.+..
T Consensus 114 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 114 RSKTL-LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp CCHHH-HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred chHHH-HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 32221 111111 1 677654321 1224444444432 334666655432
Q ss_pred ---HHHhhCCcceEeCCCCCcccc--ccC-----CCcCCccchHHHHHHHHHHcCC-CchHHHHhhhh
Q 042981 242 ---VARMMGSTNIIFIEQLTEEES--FSG-----RSFEDCEKLEPIGRKIARKCKG-LPLAAKATGNL 298 (876)
Q Consensus 242 ---v~~~~~~~~~~~l~~L~~~~~--~f~-----~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~~~ 298 (876)
+.........+++++++.++. .+. ...... .+....|++.++| ++-|+..+...
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 222222345788899988876 111 111111 1345678888988 55666665433
No 196
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.97 E-value=0.0025 Score=64.85 Aligned_cols=50 Identities=28% Similarity=0.231 Sum_probs=35.2
Q ss_pred CceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+++..-... +....+-|.|+|.+|+|||++|+++++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899988887776654321000 012345678999999999999999997
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.96 E-value=0.0031 Score=66.80 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=93.1
Q ss_pred cchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccc--------------------cccCCeEEEEEe
Q 042981 130 VDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEV--------------------KRNFEKVIWVCV 189 (876)
Q Consensus 130 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~wv~v 189 (876)
++..+.+...+..+ .-.+.+-++|..|+||||+|+.+.+.-.- ..|+| ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34455666665432 23467889999999999999988752110 01233 344443
Q ss_pred C---CchhHHHHHHHHHHh--------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHH-hhCCcc
Q 042981 190 S---DTFEEIRVANAIIEG--------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VAR-MMGSTN 250 (876)
Q Consensus 190 s---~~~~~~~~~~~i~~~--------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~~~ 250 (876)
. .......+ +++++. +|++..-+.+..+.+...+.....+..+|++|.+.+ +.. ..+...
T Consensus 82 ~~~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 82 EKGKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp CTTCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred cccCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 2 23333332 333332 788766554556667777776666778777776643 222 223456
Q ss_pred eEeCCCCCcccc--ccCCCcCCccchHHHHHHHHHHcCCCchHHHHhh
Q 042981 251 IIFIEQLTEEES--FSGRSFEDCEKLEPIGRKIARKCKGLPLAAKATG 296 (876)
Q Consensus 251 ~~~l~~L~~~~~--~f~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 296 (876)
.+++.+++.++. +..... .--.+....+++.++|-|..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 899999998886 111111 1113445778899999997765554
No 198
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00099 Score=71.44 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=89.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC---ccccc-cCC-----------------
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN---DEVKR-NFE----------------- 182 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~-~F~----------------- 182 (876)
.+++|.+..++.+..++.... ....+.|+|..|+||||+|+.+.+. +.... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458999988888887772221 2222899999999999999988762 11000 000
Q ss_pred ---eEEEEEeCCc--h---hHHHHHHHHHH---------------h-----ccccccCCccChhhHHhhhccCCCCCEEE
Q 042981 183 ---KVIWVCVSDT--F---EEIRVANAIIE---------------G-----LDDVWDGDYNKWEPFFHCLKHGLHGSKIL 234 (876)
Q Consensus 183 ---~~~wv~vs~~--~---~~~~~~~~i~~---------------~-----lDdvw~~~~~~~~~l~~~l~~~~~gs~ii 234 (876)
..+.+..+.. . ..++..+.+.. . +|++..-+....+.+...+.....+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 1122222211 1 13333333321 1 67776554445566666666555577888
Q ss_pred EEcCch-HHHH-hhCCcceEeCCCCCcccc--ccCCCc--CCccch-HHHHHHHHHHcCCCchHHHH
Q 042981 235 LTTRNE-SVAR-MMGSTNIIFIEQLTEEES--FSGRSF--EDCEKL-EPIGRKIARKCKGLPLAAKA 294 (876)
Q Consensus 235 vTTR~~-~v~~-~~~~~~~~~l~~L~~~~~--~f~~~~--~~~~~l-~~~~~~i~~~c~GlPlai~~ 294 (876)
+||.+. .+.. .......+++.+++.++. +..... ....-- .+....|++.++|-+-.+..
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 887653 2221 122346889999998776 111000 000001 24456677777776654433
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.0016 Score=68.83 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=57.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHH-----------HHh-----ccccccCCc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAI-----------IEG-----LDDVWDGDY 214 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-----------~~~-----lDdvw~~~~ 214 (876)
...+.|+|..|+||||||+.+++. ....-...+++..++-. ..+...+ +.. +||+..-..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSADDFA--QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHHHHH--HHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHHHHH--HHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 456889999999999999999973 32211134455543321 1111111 111 788854322
Q ss_pred --cChhhHHhhhcc-CCCCCEEEEEcCch---------HHHHhhCCcceEeCCCCCcccc
Q 042981 215 --NKWEPFFHCLKH-GLHGSKILLTTRNE---------SVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 215 --~~~~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
...+.+...+.. ...|..||+||... .+...+.....+++++ +.++.
T Consensus 113 ~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 113 KERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTR 171 (324)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHH
Confidence 112334444322 12366788887632 2333333345788888 76665
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.91 E-value=0.016 Score=62.45 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCCCccEEEEeecCCCCC-CchhhcccCCcEEEEecCCCCCCCCCCCccc-CceEeecCCCCceEeCcccccCCCCCCCC
Q 042981 685 PPLNVKELGIVSYGGNIF-PKWLTSLTNLRDLRLKSCVICEHFPPLGKLP-LEKLTLYGLYGVKRVGNEFLGIEGSSEDD 762 (876)
Q Consensus 685 ~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~L~L~~~~~l~~~~~~~~~~~~l~~~~ 762 (876)
.+.+|+.+.+.... ..+ ...+..+.+|+.+.+..+-..-.-..+...+ |+.+.+.++. ++.++..
T Consensus 238 ~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~----------- 304 (379)
T 4h09_A 238 GMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPR----------- 304 (379)
T ss_dssp TCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CCEECTT-----------
T ss_pred CCccceEEEcCCCc-cEeCccccceeehhccccccccceeccccccccccccccccccccc-cceehhh-----------
Confidence 34455555553321 222 2234466777777775432110112245556 7777765433 2333221
Q ss_pred CCCCCCCcccccCcccceeeccccccccccccccccccccCcccccceeeeccCccCCCCC
Q 042981 763 PSSSSSSSSVIAFPKLKSLHIGAMEELEEWNYRITRKENISIMPRLSSLTIWYCPRLRVLP 823 (876)
Q Consensus 763 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 823 (876)
.+..+.+|+.+.|.. +++.+. ...+..+++|+.+.|..+ ++.+.
T Consensus 305 --------aF~~c~~L~~i~lp~--~l~~I~-----~~aF~~C~~L~~i~ip~~--v~~I~ 348 (379)
T 4h09_A 305 --------VFMDCVKLSSVTLPT--ALKTIQ-----VYAFKNCKALSTISYPKS--ITLIE 348 (379)
T ss_dssp --------TTTTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred --------hhcCCCCCCEEEcCc--cccEEH-----HHHhhCCCCCCEEEECCc--cCEEc
Confidence 234578888887743 233322 245667888888887543 44443
No 201
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.84 E-value=0.003 Score=68.03 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.7
Q ss_pred CceeeccchHHHH---HHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNEL---LSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++++|++..++.+ .+.+.... ...+.+-|+|.+|+|||++|+++.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4699999887664 44444322 12357889999999999999999873
No 202
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.83 E-value=0.003 Score=64.52 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.8
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..++|.+..+.++.+.+..... ....|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3588999999988877764322 1244679999999999999999973
No 203
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.76 E-value=0.00055 Score=62.85 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=44.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh-----ccccccCCccChhhHHhhhcc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG-----LDDVWDGDYNKWEPFFHCLKH 226 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-----lDdvw~~~~~~~~~l~~~l~~ 226 (876)
.+++|+|..|+|||||++.+++.... ..+ .++++...+-... .++.. |||+-..+...-+.+...+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----~~~~~~~lLilDE~~~~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----DAAFEAEYLAVDQVEKLGNEEQALLFSIFNR 109 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----GGGGGCSEEEEESTTCCCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----HHHhCCCEEEEeCccccChHHHHHHHHHHHH
Confidence 57899999999999999999973221 111 2566655443221 11222 788754332222223333322
Q ss_pred -CCCCC-EEEEEcCc
Q 042981 227 -GLHGS-KILLTTRN 239 (876)
Q Consensus 227 -~~~gs-~iivTTR~ 239 (876)
...|. +||+||+.
T Consensus 110 ~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 110 FRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHTCCEEEEEESS
T ss_pred HHHcCCcEEEEECCC
Confidence 11233 48888874
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0035 Score=65.09 Aligned_cols=127 Identities=13% Similarity=-0.007 Sum_probs=78.4
Q ss_pred eccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCc-cccccCCeEEEEEeCC-chhHHHHHHHHHHh
Q 042981 128 GRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNND-EVKRNFEKVIWVCVSD-TFEEIRVANAIIEG 205 (876)
Q Consensus 128 Gr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 205 (876)
|-++.++.+...+... +.+..-++|..|+||||+|+.+.+.. ..+..+....++..+. ...+..+ +++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 3455566666666532 35788899999999999999997631 1111223345555543 3433322 333332
Q ss_pred --------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCch-HHHHhhCCcceEeCCCCCcccc
Q 042981 206 --------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNE-SVARMMGSTNIIFIEQLTEEES 262 (876)
Q Consensus 206 --------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~l~~L~~~~~ 262 (876)
+|++..-+.+..+.++..+......+.+|++|.+. .+...+... .++++++++++.
T Consensus 74 ~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i 144 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEF 144 (305)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHH
T ss_pred HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHH
Confidence 78887665566777888887777788888877554 343333334 888888887665
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0036 Score=66.52 Aligned_cols=158 Identities=11% Similarity=0.046 Sum_probs=86.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcCccccc-cCC-eEEEEEeCCchhHHH---H
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKR-NFE-KVIWVCVSDTFEEIR---V 198 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~---~ 198 (876)
.+++|.+..++.+...+... .+..+.++|..|+||||+|+.+.+. +.. .+. ...-+..++...... .
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHHHHH
Confidence 35788888888877777643 2333889999999999999998873 211 111 122233333222222 2
Q ss_pred HHHHHHh------------ccccccCCccChhhHHhhhccCCCCCEEEEEcCchH-HHH-hhCCcceEeCCCCCcccc--
Q 042981 199 ANAIIEG------------LDDVWDGDYNKWEPFFHCLKHGLHGSKILLTTRNES-VAR-MMGSTNIIFIEQLTEEES-- 262 (876)
Q Consensus 199 ~~~i~~~------------lDdvw~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~~~~~~l~~L~~~~~-- 262 (876)
.+.+.+. +|++..-.....+.+...+.......++|++|.... +.. ..+....+++.+++.++.
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 2233321 566644333445556666655555667777765432 111 112234788888887765
Q ss_pred ----ccCCCcCCccchHHHHHHHHHHcCCCchH
Q 042981 263 ----FSGRSFEDCEKLEPIGRKIARKCKGLPLA 291 (876)
Q Consensus 263 ----~f~~~~~~~~~l~~~~~~i~~~c~GlPla 291 (876)
...... ..--.+..+.+++.++|-+--
T Consensus 177 ~l~~~~~~~~--~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 177 RIANVLVHEK--LKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHHHHHHTTT--CCBCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 111110 011134556677777776653
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.26 E-value=0.0049 Score=64.14 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=36.3
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++|+...++++.+.+..... ....|-|+|..|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3589999999999888865432 223466999999999999999987
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.25 E-value=0.005 Score=64.47 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=36.8
Q ss_pred ceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.+..++.+...+..... ........+.|+|..|+||||+|+.+++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 478888888888887765310 0012246889999999999999999987
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.18 E-value=0.015 Score=60.71 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred CceeeccchHHHHHHHhhcc--CCc------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE--SSE------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.+...+... ... ......-+-|+|..|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999988877541 000 001234577999999999999999987
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.13 E-value=0.0086 Score=71.12 Aligned_cols=113 Identities=16% Similarity=0.274 Sum_probs=66.9
Q ss_pred CceeeccchHHHHHHHhhccCCc---CCCCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchh-----H
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE---QQKGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-----E 195 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~ 195 (876)
..++|.+..++.+...+...... .......+-++|..|+|||++|+++++. ....-...+.+..+.-.+ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccccc
Confidence 46899999998888888653211 0122347899999999999999999873 222122334444443221 1
Q ss_pred HHHHHHHHHh------ccccccCCccChhhHHhhhccC-----------CCCCEEEEEcC
Q 042981 196 IRVANAIIEG------LDDVWDGDYNKWEPFFHCLKHG-----------LHGSKILLTTR 238 (876)
Q Consensus 196 ~~~~~~i~~~------lDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTTR 238 (876)
..+...+-.. ||++..-..+....+...+..+ ....+||+||.
T Consensus 569 ~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 569 GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp --CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 1222222222 7888665555555666665542 13468888887
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.97 E-value=0.011 Score=71.15 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+++++++++.|.... ..-+.++|.+|+||||+|+.+++
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999986532 23467999999999999999987
No 211
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.92 E-value=0.0091 Score=62.79 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=37.5
Q ss_pred CceeeccchHHHHHHHhhcc---C---CcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---S---SEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.++.+.+.+... . .......+-|-|+|.+|+|||+||+++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 57999999999998877311 0 00012345688999999999999999997
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.029 Score=60.79 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=36.7
Q ss_pred CceeeccchHHHHHHHhhcc---CC----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---SS----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.+++|.+.+... .. -+-...+-|-++|++|.|||+||++|++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46788988888887766431 00 0122457788999999999999999998
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.71 E-value=0.0086 Score=62.34 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=27.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc-ccCCeEEEEEeC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVIWVCVS 190 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs 190 (876)
.+.+.|+|..|+|||+||+++++ ... ..-..+.+++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEHH
Confidence 46788999999999999999998 333 322345556544
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.023 Score=60.56 Aligned_cols=50 Identities=22% Similarity=0.176 Sum_probs=36.6
Q ss_pred CceeeccchHHHHHHHhhccC--C-----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFES--S-----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++.|.++.+++|.+.+.-+- + -+-...+-|-++|++|.|||.||++|++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 468899988888877664310 0 0122346678999999999999999998
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.52 E-value=0.0073 Score=67.07 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=36.6
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++|++.+++.++..|.... ..-+-|+|.+|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 359999999999999987532 23356999999999999999987
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.029 Score=60.70 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=37.2
Q ss_pred CceeeccchHHHHHHHhhcc---CC----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---SS----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.+++|.+.+... .. -+-...+-|-++|++|.|||.||+++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 46889999888888765321 00 0123456788999999999999999998
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.36 E-value=0.014 Score=56.44 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=32.1
Q ss_pred ccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 129 RVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 129 r~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456677777776532 23558999999999999999999875
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.06 E-value=0.012 Score=61.17 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=37.3
Q ss_pred CceeeccchHHHHHHHhhccC--C-----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFES--S-----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.++++.+.+...- . -+-...+.|.|+|..|+||||||+++++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 469999998888888765310 0 0012346789999999999999999997
No 219
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.95 E-value=0.017 Score=59.92 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=37.5
Q ss_pred CceeeccchHHHHHHHhhccCC------cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS------EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+.+..... .-....+.+.|+|..|+||||+|+++++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999887743100 0011346788999999999999999987
No 220
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.87 E-value=0.015 Score=62.14 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=37.7
Q ss_pred CceeeccchHHHHHHHhhcc---CC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---SS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+.+... .. ......+.|.|+|..|+|||+||+++++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877531 00 0012346788999999999999999987
No 221
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.036 Score=49.17 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred CCCccc--ccccccccCcccCeeeccCccccccchh-hccCCcccEEeecCCC
Q 042981 513 YPNLIR--EIPENVRKLIHLKYLNLSELCIERLPKT-LCELYNLQKLDIRWCE 562 (876)
Q Consensus 513 ~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 562 (876)
+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|.
T Consensus 16 s~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 16 GRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 555555 6665442 3577777777777777653 5566777777777664
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.70 E-value=0.027 Score=67.64 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=37.0
Q ss_pred ceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.+..++.+...+..... ..+.....+.|+|..|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 579999988888887764321 0022345788999999999999999986
No 223
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.64 E-value=0.025 Score=58.96 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=32.6
Q ss_pred eeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 127 CGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 127 vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
|+.+.-++++++.+...-. .+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455566777776653322 23456789999999999999998876
No 224
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.51 E-value=0.025 Score=55.10 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=27.2
Q ss_pred HHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 133 KNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 133 ~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.+.+... .+.-.+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455554432 12457999999999999999999876
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.51 E-value=0.017 Score=54.42 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLA 171 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v 171 (876)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.48 E-value=0.014 Score=61.78 Aligned_cols=49 Identities=31% Similarity=0.351 Sum_probs=34.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+-..+...... +.....+.|+|..|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35788776666665555432100 12346789999999999999999997
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.40 E-value=0.022 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 228
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.33 E-value=0.032 Score=53.14 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=58.8
Q ss_pred cCCCcceEEeeecCCCCCCCCch---hhhHHHhccCCcceEEecCccccccCCCCCcccccccccccCcccCeeeccCcc
Q 042981 463 HGLNRLRTLLIYFQSPSNPSLNS---SILSELFSKLACFRALVIGQRNFIFDPYPNLIREIPENVRKLIHLKYLNLSELC 539 (876)
Q Consensus 463 ~~~~~Lr~L~l~~~~~~~~~~~~---~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~ 539 (876)
.+-+.|+.|++.++. .+.. ..+...+..-..|+.|+|++|.+. +.....+.+.+..-..|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn----~igd~ga~~la~aL~~N~~L~~L~L~~n~ig----d~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMK----RVSKERIRSLIEAACNSKHIEKFSLANTAIS----DSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCC----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCB----HHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCC----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCC----hHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345567777775431 1111 123344556667777777333321 00111233444445667777777777
Q ss_pred cc-----ccchhhccCCcccEEeecCCCC--Cc-----cccccccCcCCCceEecCCC
Q 042981 540 IE-----RLPKTLCELYNLQKLDIRWCED--LR-----ELPAGIGKLKKMRSLLNGGT 585 (876)
Q Consensus 540 i~-----~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 585 (876)
|. .+-+.+..-+.|++|+|++|.. ++ .+-..+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 66 3344455556677777765421 11 12233444466777776655
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.30 E-value=0.019 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.24 E-value=0.024 Score=67.30 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++|+++++++++..|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999987532 22367999999999999999987
No 231
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.24 E-value=0.038 Score=57.88 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCceeeccchHHHHHHHhhcc---CC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFE---SS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|.++.++.+.+.+... .. ......+-|-++|++|+|||+||+++++
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 357899998888888766321 00 0012346788999999999999999997
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.21 E-value=0.021 Score=55.14 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.20 E-value=0.021 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 234
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.16 E-value=0.031 Score=57.39 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.14 E-value=0.027 Score=57.00 Aligned_cols=50 Identities=28% Similarity=0.290 Sum_probs=33.9
Q ss_pred CceeeccchHHHHHHHhhc---cCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLF---ESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++++.+.+.. ... -+....+-+.|+|..|+||||||+++++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5689998877777654421 100 0001234478999999999999999987
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.03 E-value=0.026 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.99 E-value=0.031 Score=58.91 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=34.7
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|+++.++.+...+... .-+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889998888888877643 2477999999999999999987
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.96 E-value=0.026 Score=53.47 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999976
No 239
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.92 E-value=0.024 Score=57.79 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=34.8
Q ss_pred CceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+.+..-... +....+-+.|+|..|+|||+||+++++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 56999998888887765420000 001123367999999999999999997
No 240
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.88 E-value=0.03 Score=60.52 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=37.5
Q ss_pred CceeeccchHHHHHHHhhccCC------cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS------EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+.+..... ......+-|-|+|..|+|||+||+++++
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999988732100 0011245788999999999999999987
No 241
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.84 E-value=0.022 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.81 E-value=0.037 Score=65.72 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.++||+.+++++++.|.... ..-+.|+|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999987532 23457999999999999999987
No 243
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.80 E-value=0.04 Score=58.64 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=36.8
Q ss_pred CceeeccchHHHHHHHhhcc---C---CcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---S---SEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+.+.+... . .......+-|-|+|..|+|||+||+++++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 46999999999998877321 0 00011234578999999999999999998
No 244
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.78 E-value=0.028 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 245
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.76 E-value=0.037 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|.|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 246
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.70 E-value=0.087 Score=46.62 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=43.8
Q ss_pred CeeeccCcccc--ccchhhccCCcccEEeecCCCCCccccc-cccCcCCCceEecCCCCC
Q 042981 531 KYLNLSELCIE--RLPKTLCELYNLQKLDIRWCEDLRELPA-GIGKLKKMRSLLNGGTPL 587 (876)
Q Consensus 531 r~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 587 (876)
..++.+++.++ .+|..+ -.+|++|+|++| .+..+|. .|..+++|+.|+|.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 47889999998 999754 357999999999 5666665 467899999999999854
No 247
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.68 E-value=0.051 Score=56.37 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=30.9
Q ss_pred eeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 127 CGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 127 vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|-......+...+..... .....+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3433444445544444322 34678999999999999999998875
No 248
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.67 E-value=0.035 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=19.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~ 172 (876)
+.+||+|.|-|||||||.|-.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHH
Confidence 67999999999999999776554
No 249
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.65 E-value=0.03 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999986
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.60 E-value=0.036 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|..|.|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999998664
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.58 E-value=0.04 Score=58.96 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=35.3
Q ss_pred ceeeccchHHHHHHHhhcc-------C--CcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 125 EVCGRVDEKNELLSKLLFE-------S--SEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.+..++.+...+... . .......+.|.++|.+|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789888888888777310 0 00011345688999999999999999997
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.58 E-value=0.037 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 253
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.58 E-value=0.04 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 254
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.57 E-value=0.037 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.57 E-value=0.049 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++++|+|..|+|||||+.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.56 E-value=0.053 Score=55.64 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred hHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 132 EKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 132 ~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++++..++..... .....+|.|.|+.|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455544433221 33467899999999999999999975
No 257
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.52 E-value=0.045 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.048 Score=54.89 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=29.8
Q ss_pred chHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 131 DEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 131 ~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++++..+...... .....+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555543321 34567899999999999999999976
No 259
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.05 Score=58.78 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=37.1
Q ss_pred CceeeccchHHHHHHHhhccC--C-----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFES--S-----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.+++|.+.+...- . -+-...+-|-++|++|.|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468899998888877664210 0 0122456688999999999999999998
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.48 E-value=0.043 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999976
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.46 E-value=0.04 Score=61.13 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=34.3
Q ss_pred ceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 125 EVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 125 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++|.++.++.+...+... .-|-|+|.+|+|||+||+++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4788888888887777643 24779999999999999999973
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.42 E-value=0.041 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999974
No 263
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.41 E-value=0.027 Score=54.49 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.37 E-value=0.046 Score=53.26 Aligned_cols=24 Identities=42% Similarity=0.376 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.37 E-value=0.077 Score=63.01 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=36.9
Q ss_pred CceeeccchHHHHHHHhhccCC---cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS---EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.+...+..... ..+.....+-++|..|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999888888877754211 0012345789999999999999999987
No 266
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.37 E-value=0.05 Score=51.78 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=60.5
Q ss_pred hhhHHHhccCCcceEEecCcc-ccccCCCCCcccccccccccCcccCeeeccCcccc-----ccchhhccCCcccEEeec
Q 042981 486 SILSELFSKLACFRALVIGQR-NFIFDPYPNLIREIPENVRKLIHLKYLNLSELCIE-----RLPKTLCELYNLQKLDIR 559 (876)
Q Consensus 486 ~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~ 559 (876)
..+..++..-+.|+.|+|+++ .+ .......+-+.+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~i----gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRV----SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSS----CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCccEEECCCCCCC----CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 345556677888999999432 22 11112234455666678999999999877 445556667788888888
Q ss_pred CCCCCcc----ccccccCcCCCceEecCCC
Q 042981 560 WCEDLRE----LPAGIGKLKKMRSLLNGGT 585 (876)
Q Consensus 560 ~~~~l~~----lp~~i~~L~~L~~L~l~~~ 585 (876)
+|..... +-..+..-+.|++|+|++|
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8843321 2233444556888887754
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.37 E-value=0.039 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 268
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.36 E-value=0.058 Score=55.66 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+.+.++|++|+|||+||+++++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.28 E-value=0.039 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 270
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.25 E-value=0.05 Score=60.14 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=34.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.++.+..++..-... ....+-+-++|++|+|||++|+++.+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSK-KMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 57999998877655443221110 11235578999999999999999998
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.23 E-value=0.042 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999875
No 272
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.23 E-value=0.044 Score=55.17 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.22 E-value=0.034 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.21 E-value=0.044 Score=60.78 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=37.2
Q ss_pred CceeeccchHHHHHHHhhccCC-------cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESS-------EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++++.+++..... -+....+-|-|+|..|+|||++|+++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999888753200 0011335588999999999999999987
No 275
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.18 E-value=0.043 Score=55.22 Aligned_cols=22 Identities=23% Similarity=0.136 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.17 E-value=0.05 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.15 E-value=0.041 Score=53.22 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.15 E-value=0.04 Score=52.65 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 279
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.10 E-value=0.071 Score=58.58 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=37.3
Q ss_pred CceeeccchHHHHHHHhhcc----C--CcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE----S--SEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.++.+.+.+... . .......+-|-|+|++|+|||+||+++++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999888876321 0 00012346788999999999999999997
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.08 E-value=0.036 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.04 E-value=0.036 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 282
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.03 E-value=0.051 Score=52.73 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.98 E-value=0.048 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 284
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.98 E-value=0.05 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.96 E-value=0.051 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-++|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.93 E-value=0.051 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 287
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.93 E-value=0.094 Score=51.27 Aligned_cols=43 Identities=28% Similarity=0.166 Sum_probs=32.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 198 (876)
-.++.|+|.+|+||||||..+.. ..=..++|++....++..++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~ 62 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERL 62 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHH
Confidence 36899999999999999999876 11246788877665555444
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.89 E-value=0.038 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.88 E-value=0.053 Score=51.62 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|+.|+||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 290
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.86 E-value=0.048 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.86 E-value=0.053 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.79 E-value=0.056 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 293
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.75 E-value=0.056 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 294
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.70 E-value=0.045 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 295
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.69 E-value=0.04 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.65 E-value=0.055 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.60 E-value=0.065 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999886
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.59 E-value=0.058 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.58 E-value=0.06 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 300
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.55 E-value=0.064 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999976
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.51 E-value=0.07 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|.-|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 302
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.47 E-value=0.047 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 303
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.47 E-value=0.075 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..-.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 304
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.067 Score=57.77 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=36.7
Q ss_pred CceeeccchHHHHHHHhhcc---CC----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---SS----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.+++|.+.+... .. -+-...+-|-++|++|.|||+||+++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 46889998888887765320 00 0123456788999999999999999998
No 305
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.42 E-value=0.052 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.40 E-value=0.064 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 307
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.36 E-value=0.061 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999885
No 308
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.36 E-value=0.15 Score=50.64 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=33.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccc----cCCeEEEEEeCCchhHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~ 198 (876)
-.++.|+|..|+||||||..+........ .-..++|+.....++..++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 36899999999999999998876311111 1247888887765554433
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.34 E-value=0.063 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 310
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.25 E-value=0.065 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 311
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.22 E-value=0.11 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888763
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.21 E-value=0.072 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999976
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.19 E-value=0.044 Score=53.47 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|+|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 314
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.18 E-value=0.14 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 315
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.17 E-value=0.069 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.17 E-value=0.081 Score=52.91 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.13 E-value=0.08 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999999999886
No 318
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.12 E-value=0.13 Score=53.64 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998886
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.09 E-value=0.069 Score=51.06 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 320
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.09 E-value=0.085 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAY 172 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~ 172 (876)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999987
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.09 E-value=0.073 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+++|+|..|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999886
No 322
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.08 E-value=0.1 Score=51.06 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=28.4
Q ss_pred ccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 129 RVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 129 r~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++..+++.+.+.. ....+|.|+|.+|+|||||+.++..
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34445555554432 2568999999999999999988876
No 323
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.07 E-value=0.078 Score=58.30 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=34.6
Q ss_pred CceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++.++++.+.+..-... +..-.+-|.|+|+.|+||||||+++++
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46999998877776654321100 011223477999999999999999997
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.05 E-value=0.1 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 325
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.02 E-value=0.06 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.98 E-value=0.2 Score=49.34 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=29.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc---c-cCCeEEEEEeCCchh
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSDTFE 194 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~ 194 (876)
-.+++|+|..|+|||||++.+....... . .-...+|+.-...+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 3799999999999999999987521111 1 123577777554433
No 327
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.97 E-value=0.051 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=16.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 328
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.97 E-value=0.086 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999976
No 329
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.89 E-value=0.2 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.85 E-value=0.06 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999875
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.81 E-value=0.088 Score=62.48 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCceeeccchHHHHHHHhhcc---CC----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 123 EGEVCGRVDEKNELLSKLLFE---SS----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|.+..++++.+++... .. -+-.....|.|+|..|+||||||+.+.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 357999999999988887531 00 0012345689999999999999999987
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.77 E-value=0.08 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 333
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.77 E-value=0.089 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++++|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988875
No 334
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.71 E-value=0.083 Score=56.74 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=34.2
Q ss_pred CceeeccchHHHHHHHhhc----cC--------------------CcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLF----ES--------------------SEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~----~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.+..++.+...+.. .. .........+.++|..|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578888888877766620 00 00011234578999999999999999987
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.71 E-value=0.082 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 336
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.085 Score=56.41 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=36.6
Q ss_pred CceeeccchHHHHHHHhhcc---CC----cCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE---SS----EQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.+++|.+.+... .. -+-...+-|-++|++|.|||.||+++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 46788888888887765421 10 0122456788999999999999999998
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.69 E-value=0.083 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.64 E-value=0.12 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 339
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.52 E-value=0.078 Score=50.45 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998873
No 340
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.51 E-value=0.089 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999886
No 341
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.47 E-value=0.088 Score=59.43 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=35.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.++-++.+.+.+....-.......++.|+|..|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45889888777776554321110012456899999999999999999987
No 342
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.46 E-value=0.071 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 343
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.40 E-value=0.11 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 344
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.37 E-value=0.17 Score=53.79 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=27.3
Q ss_pred HHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 133 KNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 133 ~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++.+.+... .....+|+|+|.+|+|||||+.++..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23678999999999999999988764
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.35 E-value=0.11 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 346
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.29 E-value=0.11 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.28 E-value=0.092 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 348
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.23 E-value=0.1 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
. .+++|+|..|.|||||.+.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7999999999999999999986
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.19 E-value=0.091 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999976
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.18 E-value=0.071 Score=56.58 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+...+.... ..-|-|+|..|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458998876655444333221 12278999999999999999987
No 351
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.18 E-value=0.11 Score=53.92 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 191 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 191 (876)
...+||+|+|-||+||||+|-.+.. .....=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 4678999999999999999977765 2222212455555543
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.17 E-value=0.1 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.17 E-value=0.1 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999999999886
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.14 E-value=0.092 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 355
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.08 E-value=0.15 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999985
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.08 E-value=0.091 Score=53.48 Aligned_cols=50 Identities=26% Similarity=0.239 Sum_probs=31.7
Q ss_pred CceeeccchHHHHHHHhhccCCc-------CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE-------QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|.++.++++.+.+...-.. +-.-.+=+.++|+.|.||||||+.++.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45778777777776654311000 000112289999999999999999997
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.03 E-value=0.095 Score=52.72 Aligned_cols=51 Identities=29% Similarity=0.347 Sum_probs=31.5
Q ss_pred CceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
++++|.+..+.++.+....-... +-.-.+-+.|+|..|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46788776665554433210000 0001122889999999999999999973
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.03 E-value=0.1 Score=50.86 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.98 E-value=0.21 Score=54.21 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHHhhccCCc---CCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 133 KNELLSKLLFESSE---QQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 133 ~~~i~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++.+.|...... .....++|.|+|.+|+||||+|..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44566665432110 123578999999999999999987775
No 360
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.94 E-value=0.11 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999998873
No 361
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.93 E-value=0.11 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 362
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.92 E-value=0.16 Score=51.54 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEE
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWV 187 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (876)
.+++|+|..|.|||||++.+.. +.....+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G---l~~p~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG---ILKPSSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHc---CCCCCCeEEEE
Confidence 5899999999999999999986 22334455444
No 363
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.90 E-value=0.077 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred EEEEEEecCCchHHHHHHHHH-c
Q 042981 152 HVISLVGLGGMGKTTLAQLAY-N 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~-~ 173 (876)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999998 5
No 364
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.86 E-value=0.14 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999988876
No 365
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.83 E-value=0.34 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...||.++|.+|+||||++.++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999987765
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.81 E-value=0.11 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 367
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.75 E-value=0.12 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.19 Score=47.87 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.72 E-value=0.25 Score=57.71 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=37.5
Q ss_pred CceeeccchHHHHHHHhhc---cCC----cCCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 124 GEVCGRVDEKNELLSKLLF---ESS----EQQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++.|.++.+++|.+.+.. ... -+-...+-|-++|++|.|||+||++|++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688999888888876532 110 01224567889999999999999999983
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.71 E-value=0.17 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 371
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.60 E-value=0.18 Score=54.58 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=35.2
Q ss_pred CceeeccchHHHHHHHhhcc--------CCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFE--------SSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46889888888887666321 000011235588999999999999999987
No 372
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.54 E-value=0.13 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 373
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.44 E-value=0.15 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999988874
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.40 E-value=0.12 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 375
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.34 E-value=0.15 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|++|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999886
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.33 E-value=0.2 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999986
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.29 E-value=0.32 Score=50.78 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=35.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc----CCeEEEEEeCCchhHHHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~ 200 (876)
-.++.|+|.+|+||||||.++......... =..++|++....++..++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 368999999999999999887753211110 24688999888777666543
No 378
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.28 E-value=0.2 Score=50.02 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 379
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.28 E-value=0.19 Score=55.61 Aligned_cols=52 Identities=29% Similarity=0.316 Sum_probs=34.6
Q ss_pred CCceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-.+++|.++.++++.+....-... +-.-.+-|.|+|..|+||||||++++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899988777766554321000 0011233889999999999999999973
No 380
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.27 E-value=0.1 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 381
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.26 E-value=0.17 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|+.|+||||||..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 382
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.23 E-value=0.16 Score=52.89 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++|+|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988875
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.22 E-value=0.24 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|.|.|+.|+||||+++.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.12 E-value=0.13 Score=52.62 Aligned_cols=52 Identities=29% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCceeeccchHHHHHHHhhccCCc------CCCCeEEEEEEecCCchHHHHHHHHHcC
Q 042981 123 EGEVCGRVDEKNELLSKLLFESSE------QQKGLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 123 ~~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-++++|.++.++++.+....-... +-.-.+-+.|+|..|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 356888887766665543211000 0001122889999999999999999973
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.09 E-value=0.15 Score=49.68 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.06 E-value=0.15 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 387
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.05 E-value=0.15 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 388
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.03 E-value=0.14 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 389
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.02 E-value=0.36 Score=50.43 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccc---------cC-----CeEEEEEeCCchhHHHHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSDTFEEIRVANA 201 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~ 201 (876)
-.++-|+|.+|+||||||.++........ .. ..++|++....++..++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 47899999999999999988775321111 11 46889998888776666543
No 390
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.01 E-value=0.14 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.00 E-value=0.21 Score=50.58 Aligned_cols=22 Identities=50% Similarity=0.675 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 392
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.97 E-value=0.12 Score=50.16 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999986
No 393
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.95 E-value=0.16 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 394
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.95 E-value=0.15 Score=50.93 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999997
No 395
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.93 E-value=1 Score=47.33 Aligned_cols=144 Identities=7% Similarity=-0.075 Sum_probs=87.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh----------cccccc-CCccChh
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG----------LDDVWD-GDYNKWE 218 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----------lDdvw~-~~~~~~~ 218 (876)
-.++.-++|..|.||++.|+.+.+.. ....|+....+.+....+.+++...+-.. +|++.. -+.+.++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~ 95 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINE 95 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHH
Confidence 34688899999999999998887621 12345432233455556777766554332 788755 3445677
Q ss_pred hHHhhhccCCCCCEEEEEcCc-------hHHHHhhC-CcceEeCCCCCcccc--ccCCCc--CCccchHHHHHHHHHHcC
Q 042981 219 PFFHCLKHGLHGSKILLTTRN-------ESVARMMG-STNIIFIEQLTEEES--FSGRSF--EDCEKLEPIGRKIARKCK 286 (876)
Q Consensus 219 ~l~~~l~~~~~gs~iivTTR~-------~~v~~~~~-~~~~~~l~~L~~~~~--~f~~~~--~~~~~l~~~~~~i~~~c~ 286 (876)
.+...+.....++.+|++|-. ..+...+. ....++..+++.++- +..... ..-.--.+....+++.++
T Consensus 96 aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 96 QLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp HHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 888888776678888776643 24444433 456888888887765 111000 001112345667777777
Q ss_pred CCchHHHH
Q 042981 287 GLPLAAKA 294 (876)
Q Consensus 287 GlPlai~~ 294 (876)
|-..++..
T Consensus 176 gdl~~~~~ 183 (343)
T 1jr3_D 176 GNLLALAQ 183 (343)
T ss_dssp TCHHHHHH
T ss_pred hHHHHHHH
Confidence 76665544
No 396
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.91 E-value=0.15 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 6899999999999999999986
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.91 E-value=0.15 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.85 E-value=0.15 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 399
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.73 E-value=0.16 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999997
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.71 E-value=0.17 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 401
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.70 E-value=0.16 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 402
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.69 E-value=0.45 Score=50.12 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccc----cCCeEEEEEeCCchhHHHHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAN 200 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~ 200 (876)
.-.++.|+|..|+||||||.++........ .=..++|++....++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 447899999999999999988776321211 124688999888777666544
No 403
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.69 E-value=0.35 Score=51.05 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=32.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcCccccccC----CeEEEEEeCCchhHHH
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNNDEVKRNF----EKVIWVCVSDTFEEIR 197 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~ 197 (876)
.-.++.|+|..|+|||||+.++.......... ..++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 34799999999999999999887632111111 2458888766554333
No 404
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.63 E-value=0.18 Score=51.83 Aligned_cols=24 Identities=42% Similarity=0.358 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.63 E-value=0.4 Score=49.30 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCC-eEEEEEeCC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFE-KVIWVCVSD 191 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~ 191 (876)
.+++|+|..|+|||||++.+... +...-. .++|+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC
Confidence 68999999999999999988763 222212 466665543
No 406
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.62 E-value=0.22 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 407
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.62 E-value=0.17 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 408
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.62 E-value=0.35 Score=50.88 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=32.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 196 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 196 (876)
-+++.|+|.+|+||||||.++... ....=..++|++....++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH
Confidence 479999999999999999988863 22221357788877766644
No 409
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.61 E-value=0.21 Score=49.13 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=26.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 191 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 191 (876)
.++.|+|..|+|||||++.+.... ...=..++|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc
Confidence 689999999999999999988532 11112456666544
No 410
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.59 E-value=0.4 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.375 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..+||.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988775
No 411
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.55 E-value=0.16 Score=51.23 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 412
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.50 E-value=0.19 Score=54.58 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|.+|+||||+|.++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988775
No 413
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.46 E-value=0.32 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++|.|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988875
No 414
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.46 E-value=0.2 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999988764
No 415
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.46 E-value=0.62 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.|.|.+|+||||++.++..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 889999999999999988876
No 416
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.40 E-value=0.17 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.37 E-value=0.19 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.|++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999886
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.28 E-value=0.17 Score=47.88 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998863
No 419
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.25 E-value=0.26 Score=46.90 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+.|+|++|+||||+|.++++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988876
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.23 E-value=0.18 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.22 E-value=0.18 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 422
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.21 E-value=0.18 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 423
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.12 E-value=0.23 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 6899999999999999999985
No 424
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.10 E-value=0.18 Score=51.27 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 425
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.03 E-value=0.2 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+|.|.|++|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999986
No 426
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.97 E-value=0.22 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888899999999999977765
No 427
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.97 E-value=0.29 Score=51.63 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=31.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 195 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 195 (876)
-+++.|+|.+|+||||||.++... ....=..++|++....++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCH
Confidence 368999999999999999888752 2222236788888776654
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.94 E-value=0.1 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 429
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.92 E-value=0.23 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47889999999999999987765
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.91 E-value=0.25 Score=56.65 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=34.2
Q ss_pred CceeeccchHHHHHHHhhccCCcCCCCeEEEEEEecCCchHHHHHHHHHc
Q 042981 124 GEVCGRVDEKNELLSKLLFESSEQQKGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 124 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|.+..++.+...+... ..+.|+|..|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899888777777666532 4689999999999999999987
No 431
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.89 E-value=0.18 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999886
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.88 E-value=0.21 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHc
Q 042981 149 KGLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999886
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.87 E-value=0.22 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+++-|+|++|+||||||.++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5678999999999999999886
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.78 E-value=0.23 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|..|.|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 36899999999999999998865
No 435
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.77 E-value=0.63 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-..|.|-|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999999986
No 436
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.75 E-value=0.31 Score=48.43 Aligned_cols=39 Identities=31% Similarity=0.301 Sum_probs=27.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 192 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 192 (876)
.++.|.|.+|+||||||.++... ....=..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 58999999999999999777542 2122235777776554
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.71 E-value=0.25 Score=50.38 Aligned_cols=24 Identities=33% Similarity=0.217 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 438
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.67 E-value=0.22 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 439
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.67 E-value=0.29 Score=51.60 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=32.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 196 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 196 (876)
-+++.|.|.+|+||||||.++... ....=..++|++....++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH
Confidence 368999999999999999887753 22222368899887776643
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.66 E-value=0.22 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 36899999999999999999875
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.63 E-value=0.22 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.61 E-value=0.25 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
..|.|.|..|+||||+++.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999986
No 443
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.60 E-value=0.23 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999986
No 444
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.58 E-value=0.27 Score=46.38 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.56 E-value=0.21 Score=54.23 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|.|+|+.|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.54 E-value=0.21 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++.|+|.+|+||||||.++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
No 447
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.15 E-value=0.23 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 448
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.10 E-value=0.36 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....|.|+|..|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 449
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.07 E-value=0.34 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999986
No 450
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.05 E-value=0.24 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 451
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.00 E-value=0.59 Score=44.66 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=29.5
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 154 ISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
|+|=|.-|+||||.++.+++ ..+..-..+++..-.......+..++++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 67889999999999999987 4544433444444333333333334433
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.97 E-value=0.28 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+.+|+|..|.|||||+++++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 453
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.95 E-value=0.26 Score=45.75 Aligned_cols=24 Identities=42% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345789999999999999988764
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.91 E-value=0.24 Score=51.54 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.++|++|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999863
No 455
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.87 E-value=0.27 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998864
No 456
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.86 E-value=0.25 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999986
No 457
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.57 E-value=0.34 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 458
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.56 E-value=0.59 Score=50.07 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=32.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc----ccCCeEEEEEeCCchhHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRV 198 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~ 198 (876)
-.++.|+|..|+|||||+..++-..... ..-..++|++....++..++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 3689999999999999999664211111 12246888887776655543
No 459
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.51 E-value=0.28 Score=45.10 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 460
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.45 E-value=0.36 Score=45.87 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566889999999999999998864
No 461
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.35 E-value=0.61 Score=48.40 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=33.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHHHh
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAIIEG 205 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 205 (876)
.++.|.|.+|+||||+|.++..+.-.+. ..++|++.- .+...+...++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 6788999999999999988765322222 567777765 3445555555543
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.26 E-value=0.31 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
++|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999998875
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.23 E-value=0.3 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.--|.|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 464
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.13 E-value=0.55 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999988864
No 465
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.10 E-value=0.3 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.|+|..|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.10 E-value=0.22 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
....|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.10 E-value=0.32 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
+.|.|.|..|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6688999999999999999876
No 468
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.09 E-value=0.31 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999998764
No 469
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.08 E-value=0.35 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999988764
No 470
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.05 E-value=0.31 Score=44.83 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-|.|+|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 368999999999999998865
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.01 E-value=0.76 Score=45.20 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=31.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCCeEEEEEeCCchhHHHHHHHHH
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVANAII 203 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 203 (876)
-..|.|.|..|+||||+++.+.+.-. ...+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 36899999999999999999987321 23455344444332222333444444
No 472
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.01 E-value=0.24 Score=50.88 Aligned_cols=23 Identities=48% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988875
No 473
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.00 E-value=0.35 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 474
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.94 E-value=0.4 Score=45.07 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 475
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=86.93 E-value=0.28 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..|+|+|.+|+|||||.+++..+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999988763
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.88 E-value=0.32 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.|+|..|+|||||...+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 477
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.85 E-value=0.32 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
--|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 478
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.78 E-value=0.32 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 6899999999999999999986
No 479
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.70 E-value=0.36 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
....|.|+|.+|+|||||+..+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999988764
No 480
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.66 E-value=0.36 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 481
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.65 E-value=0.42 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...|.|+|..|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998875
No 482
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.63 E-value=0.47 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999998765
No 483
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.61 E-value=0.81 Score=44.52 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-..|.|.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 484
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.57 E-value=0.34 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 042981 153 VISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
-|.|+|..|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 485
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.56 E-value=0.35 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.+++|+|..|.|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999986
No 486
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.55 E-value=0.33 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
--|.|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999877653
No 487
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.54 E-value=0.35 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..|+|+|.+|+|||||..++.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988764
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.50 E-value=0.91 Score=43.90 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-ccCCeEEEEEeCCchhHHHHHHHHHH
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFEEIRVANAIIE 204 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~ 204 (876)
..|.|-|..|+||||+++.+.+ ... ..+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999987 332 23433444433332333444455544
No 489
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.46 E-value=0.6 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.-.+++|+|..|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 490
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.45 E-value=0.38 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...+|+|+|.+|+|||||..++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 491
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.42 E-value=0.37 Score=51.36 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 492
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.41 E-value=0.32 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
--|.|+|.+|+|||||++.+.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999987765
No 493
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.39 E-value=0.34 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
--|.|+|.+|+|||||+..+.++
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45789999999999999888764
No 494
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.33 E-value=0.37 Score=44.42 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 042981 152 HVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
--|.|+|..|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999988754
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.30 E-value=0.6 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=17.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 042981 151 LHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-..|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.30 E-value=0.33 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHcC
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYNN 174 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (876)
..--|.|+|..|+|||||...+..+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 497
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.29 E-value=0.33 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHc
Q 042981 150 GLHVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.++| +|+|..|+|||||.+.++.
T Consensus 18 ~~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred CEEE-EEECCCCCCHHHHHHHHhC
Confidence 3454 9999999999999999886
No 498
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.21 E-value=0.47 Score=43.72 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
-|.|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 499
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.19 E-value=0.38 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 042981 152 HVISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (876)
--|.|+|.+|+|||||.+.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999999997776
No 500
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.16 E-value=0.53 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=17.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 042981 153 VISLVGLGGMGKTTLAQLAYN 173 (876)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~ 173 (876)
.|.+.|.||+||||+|-.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 367889999999999877765
Done!