Query 042984
Match_columns 132
No_of_seqs 136 out of 1110
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-41 4.3E-46 310.3 12.2 127 1-132 1-158 (1153)
2 PLN03194 putative disease resi 100.0 2E-37 4.2E-42 234.9 10.0 100 13-129 24-156 (187)
3 PF01582 TIR: TIR domain; Int 99.8 1.6E-21 3.4E-26 140.7 1.5 105 14-118 27-140 (141)
4 smart00255 TIR Toll - interleu 99.8 3.1E-19 6.7E-24 126.9 11.1 93 29-122 46-139 (140)
5 PF13676 TIR_2: TIR domain; PD 98.9 4.2E-10 9.2E-15 76.2 1.0 51 25-79 37-87 (102)
6 KOG3678 SARM protein (with ste 97.8 3.2E-05 7E-10 66.9 5.6 74 12-89 609-729 (832)
7 PF08937 DUF1863: MTH538 TIR-l 97.6 6.3E-05 1.4E-09 53.6 3.8 49 26-78 59-107 (130)
8 PF09441 Abp2: ARS binding pro 82.2 0.65 1.4E-05 35.0 1.0 90 15-118 17-111 (175)
9 PF08357 SEFIR: SEFIR domain; 65.4 31 0.00067 24.3 6.2 19 30-48 51-69 (150)
10 PF10137 TIR-like: Predicted n 57.2 14 0.00031 26.3 3.2 24 25-48 38-61 (125)
11 KOG2792 Putative cytochrome C 54.5 15 0.00032 29.9 3.1 30 54-83 154-187 (280)
12 PRK05337 beta-hexosaminidase; 50.5 71 0.0015 26.4 6.7 61 18-84 4-65 (337)
13 COG4916 Uncharacterized protei 50.5 7.4 0.00016 31.8 0.8 50 36-87 233-283 (329)
14 PF13271 DUF4062: Domain of un 39.3 33 0.00071 22.2 2.5 29 24-52 39-67 (83)
15 PF14258 DUF4350: Domain of un 37.6 97 0.0021 18.9 4.6 41 32-74 28-68 (70)
16 TIGR00295 conserved hypothetic 33.0 85 0.0018 22.9 4.2 32 92-123 132-163 (164)
17 cd02986 DLP Dim1 family, Dim1- 32.3 88 0.0019 22.0 3.9 57 30-93 4-65 (114)
18 PF11074 DUF2779: Domain of un 29.1 59 0.0013 23.3 2.6 44 18-63 47-94 (130)
19 cd01241 PH_Akt Akt pleckstrin 28.9 50 0.0011 22.1 2.2 17 105-121 86-102 (102)
20 KOG3043 Predicted hydrolase re 26.9 1.3E+02 0.0028 24.1 4.4 61 37-99 37-97 (242)
21 cd03028 GRX_PICOT_like Glutare 25.3 39 0.00085 22.0 1.1 22 34-57 4-25 (90)
22 PRK05339 PEP synthetase regula 24.9 1.3E+02 0.0028 24.4 4.1 43 27-70 198-240 (269)
23 KOG1136 Predicted cleavage and 24.7 1.1E+02 0.0024 26.2 3.9 45 34-78 191-241 (501)
24 smart00233 PH Pleckstrin homol 24.3 80 0.0017 19.0 2.4 17 105-121 85-101 (102)
25 PF00169 PH: PH domain; Inter 23.1 91 0.002 19.2 2.5 17 105-121 87-103 (104)
26 TIGR02453 conserved hypothetic 22.8 1.2E+02 0.0026 23.5 3.5 54 72-128 94-151 (217)
27 PF10579 Rapsyn_N: Rapsyn N-te 22.5 54 0.0012 21.8 1.3 19 107-125 23-41 (80)
28 PRK05225 ketol-acid reductoiso 22.3 42 0.0009 29.5 0.9 29 88-119 307-335 (487)
29 cd01219 PH_FGD FGD (faciogenit 22.3 86 0.0019 20.9 2.3 18 105-122 83-100 (101)
30 cd01266 PH_Gab Gab (Grb2-assoc 22.3 79 0.0017 21.2 2.2 17 105-121 92-108 (108)
31 cd01251 PH_centaurin_alpha Cen 21.8 96 0.0021 20.8 2.5 19 105-123 84-102 (103)
32 PF06543 Lac_bphage_repr: Lact 20.9 52 0.0011 19.9 0.9 23 14-36 18-40 (49)
33 PF15409 PH_8: Pleckstrin homo 20.8 86 0.0019 21.1 2.1 15 106-120 74-88 (89)
34 cd01238 PH_Tec Tec pleckstrin 20.2 84 0.0018 21.2 2.0 16 105-120 91-106 (106)
35 cd01260 PH_CNK Connector enhan 20.1 88 0.0019 20.2 2.0 15 105-119 81-95 (96)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-41 Score=310.30 Aligned_cols=127 Identities=46% Similarity=0.795 Sum_probs=116.8
Q ss_pred CCCCCCCCCCCCCCceeEEEeccC-------------------------------CCcchHHHHHhhhccceEEEeecCc
Q 042984 1 MASSSSSINMIPHTKYDVFLSFRE-------------------------------DEISPSLSSAIEGSKISIVIFSEGY 49 (132)
Q Consensus 1 m~~~s~~~~~~~~~~ydVFlsfrg-------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y 49 (132)
||+|||++ +.++||||||||| +.|+++|++||++|+++|||||+||
T Consensus 1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 67776553 4589999999999 5688999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984 50 ASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH 129 (132)
Q Consensus 50 ~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~ 129 (132)
|+|.|||+||++|++|+++.++.|+||||+|+|+|||+|+|.||++|.+++++. ++|++++||+||++|++++||+++
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~ 155 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ 155 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence 999999999999999999999999999999999999999999999999988753 478999999999999999999987
Q ss_pred CCC
Q 042984 130 SIR 132 (132)
Q Consensus 130 ~~~ 132 (132)
+++
T Consensus 156 ~~~ 158 (1153)
T PLN03210 156 NWP 158 (1153)
T ss_pred CCC
Confidence 764
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2e-37 Score=234.87 Aligned_cols=100 Identities=33% Similarity=0.565 Sum_probs=90.0
Q ss_pred CCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHHH
Q 042984 13 HTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELV 60 (132)
Q Consensus 13 ~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~ 60 (132)
..+||||||||| +.|.+.|.+||++|+++|+|||++|++|.|||+||+
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~ 103 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA 103 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence 368999999999 567789999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeeeEEeecCCcccccc-cCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984 61 KILEIKNKYGQIVVPVFYRVDPSDVRNQ-TGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH 129 (132)
Q Consensus 61 ~i~~~~~~~~~~viPIfy~v~ps~V~~q-~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~ 129 (132)
+|+++. ..||||||+|+|+|||+| .|. .+.+++++||.||++|++++|++++
T Consensus 104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence 999863 489999999999999997 443 2368999999999999999999875
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.82 E-value=1.6e-21 Score=140.65 Aligned_cols=105 Identities=35% Similarity=0.528 Sum_probs=89.1
Q ss_pred CceeEEEeccC----CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcC--CeeeeEEeecCCcccc-
Q 042984 14 TKYDVFLSFRE----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYG--QIVVPVFYRVDPSDVR- 86 (132)
Q Consensus 14 ~~ydVFlsfrg----~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~--~~viPIfy~v~ps~V~- 86 (132)
..|.+|+-.|. ..+.++|.++|++||+.|+|||++|+.|.||++||..++++....+ ..|+||||+|.+++++
T Consensus 27 ~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~ 106 (141)
T PF01582_consen 27 YGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRP 106 (141)
T ss_dssp STS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHT
T ss_pred CCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcCh
Confidence 35778887653 6788999999999999999999999999999999999999986644 8999999999999999
Q ss_pred cccCchHHHHHHHHHHhhhC--hHHHHHHHHHHH
Q 042984 87 NQTGTFGDSFSELEERFKEK--IDMLQTWRIAMR 118 (132)
Q Consensus 87 ~q~g~~~~~f~~~~~~~~~~--~e~v~~Wr~AL~ 118 (132)
.+++.|+..|..+......+ ..+...|++++.
T Consensus 107 ~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 107 DQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 79999999998877655443 578999999875
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.81 E-value=3.1e-19 Score=126.85 Aligned_cols=93 Identities=39% Similarity=0.653 Sum_probs=79.9
Q ss_pred hHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHh-cCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhCh
Q 042984 29 PSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNK-YGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKI 107 (132)
Q Consensus 29 ~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~-~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~ 107 (132)
.+|.++|++|++.|+|+|++|..|.||..|+..++++... ....||||+|+..|+++..+.+.++..+..+..++..+.
T Consensus 46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~ 125 (140)
T smart00255 46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDE 125 (140)
T ss_pred HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCch
Confidence 3889999999999999999999999999999999887654 668999999999999999999999999988755554333
Q ss_pred HHHHHHHHHHHHhhc
Q 042984 108 DMLQTWRIAMREAAN 122 (132)
Q Consensus 108 e~v~~Wr~AL~~v~~ 122 (132)
.+ +.|++++..+.+
T Consensus 126 ~~-~fW~~~~~~l~~ 139 (140)
T smart00255 126 KE-RFWKKALYAVPS 139 (140)
T ss_pred hH-HHHHHHHHHhcc
Confidence 33 799999988764
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.89 E-value=4.2e-10 Score=76.24 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=43.2
Q ss_pred CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEee
Q 042984 25 DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYR 79 (132)
Q Consensus 25 ~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~ 79 (132)
+.+.+.|.++|++|...|+++|++|..|+||..|+..+. +.+..|+||..+
T Consensus 37 ~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~----~~~~~iipv~~~ 87 (102)
T PF13676_consen 37 EDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW----KRGKPIIPVRLD 87 (102)
T ss_dssp S-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH----CTSESEEEEECS
T ss_pred CCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH----HCCCEEEEEEEC
Confidence 556678889999999999999999999999999998883 245589999953
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.83 E-value=3.2e-05 Score=66.94 Aligned_cols=74 Identities=27% Similarity=0.469 Sum_probs=56.9
Q ss_pred CCCceeEEEeccC------------------------------CCcchHHHHHhhhccceEEEeecCcc--------ccH
Q 042984 12 PHTKYDVFLSFRE------------------------------DEISPSLSSAIEGSKISIVIFSEGYA--------SSR 53 (132)
Q Consensus 12 ~~~~ydVFlsfrg------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~--------~S~ 53 (132)
-+.+.|||||||- ..+.++|++.|...+-+|+|++||-. .-+
T Consensus 609 ~skq~DVFISYRRstGnQLASLiKV~LQL~GyrVFIDVdKL~AGKFdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeD 688 (832)
T KOG3678|consen 609 LSKQIDVFISYRRSTGNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCED 688 (832)
T ss_pred ccCCcceEEEeeccccHHHHHHHHHHHHhcCceEEEehhhhhcccccHHHHHHHHhhheeEEEeCcchHHHHhccccHHH
Confidence 3467999999997 56889999999999999999999843 235
Q ss_pred HHHHHHHHHHHHHHhcCCeeeeEEee---------cCCccccccc
Q 042984 54 WCLNELVKILEIKNKYGQIVVPVFYR---------VDPSDVRNQT 89 (132)
Q Consensus 54 wCl~EL~~i~~~~~~~~~~viPIfy~---------v~ps~V~~q~ 89 (132)
|--.||...++|.+ .|||||-. +-|.|++-.+
T Consensus 689 WVHKEl~~Afe~~K----NIiPI~D~aFE~Pt~ed~iPnDirmi~ 729 (832)
T KOG3678|consen 689 WVHKELKCAFEHQK----NIIPIFDTAFEFPTKEDQIPNDIRMIT 729 (832)
T ss_pred HHHHHHHHHHHhcC----CeeeeecccccCCCchhcCcHHHHHHH
Confidence 66667777776654 89999954 5566666554
No 7
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.63 E-value=6.3e-05 Score=53.58 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=33.3
Q ss_pred CcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEe
Q 042984 26 EISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFY 78 (132)
Q Consensus 26 ~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy 78 (132)
.|...|.++|++|.+.||+.+++-..|+|+-.|+...++ .+..||-|.+
T Consensus 59 ~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 59 YIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp THHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 456778889999999999999999999999999998765 3446666654
No 8
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=82.16 E-value=0.65 Score=34.98 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=53.0
Q ss_pred ceeEEEeccC-----CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCccccccc
Q 042984 15 KYDVFLSFRE-----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89 (132)
Q Consensus 15 ~ydVFlsfrg-----~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~~q~ 89 (132)
.|=.||=||- ..-+.+|.++.+.--. |..=.-|.|-|.||..-++..+-+.=.=+-+.++|+|-++.+..
T Consensus 17 AYv~FilyCNP~vP~~tdT~~Lr~aFr~pPk-----S~Gk~Fs~~~Lf~LI~k~~~keikTW~~La~~LGVepp~~ek~q 91 (175)
T PF09441_consen 17 AYVAFILYCNPAVPLDTDTSELREAFRSPPK-----SDGKSFSTFTLFELIRKLESKEIKTWAQLALELGVEPPDPEKGQ 91 (175)
T ss_pred hhheeeeecCCCCCCCCCHHHHHHHhcCCCC-----cCCccchHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCCccccc
Confidence 4445666666 2234456666542111 22223368999999877665433222234566799998876532
Q ss_pred CchHHHHHHHHHHhhhChHHHHHHHHHHH
Q 042984 90 GTFGDSFSELEERFKEKIDMLQTWRIAMR 118 (132)
Q Consensus 90 g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~ 118 (132)
..++.+...-+++||+.|+.
T Consensus 92 ---------StQKvqQYaVRLKRWM~aMH 111 (175)
T PF09441_consen 92 ---------STQKVQQYAVRLKRWMRAMH 111 (175)
T ss_pred ---------chHHHHHHHHHHHHHHHHhh
Confidence 13344455678999999975
No 9
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=65.41 E-value=31 Score=24.29 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHhhhccceEEEeecC
Q 042984 30 SLSSAIEGSKISIVIFSEG 48 (132)
Q Consensus 30 ~l~~aI~~Sri~IvV~S~~ 48 (132)
=+.+.|+++...|||.|+.
T Consensus 51 W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 51 WMERQIREADKVLIVCSPG 69 (150)
T ss_pred HHHHHHhcCCEEEEEeccc
Confidence 4557799999999999944
No 10
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=57.24 E-value=14 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCcchHHHHHhhhccceEEEeecC
Q 042984 25 DEISPSLSSAIEGSKISIVIFSEG 48 (132)
Q Consensus 25 ~~i~~~l~~aI~~Sri~IvV~S~~ 48 (132)
..+.+.|.+.+.++..+|++++|+
T Consensus 38 ~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 38 QTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CchHHHHHHHhccCCEEEEEEccc
Confidence 344455556666677777777764
No 11
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=54.53 E-value=15 Score=29.93 Aligned_cols=30 Identities=40% Similarity=0.626 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHH---HH-hcCCeeeeEEeecCCc
Q 042984 54 WCLNELVKILEI---KN-KYGQIVVPVFYRVDPS 83 (132)
Q Consensus 54 wCl~EL~~i~~~---~~-~~~~~viPIfy~v~ps 83 (132)
-|-|||.++... .+ ..+..++|||--|+|.
T Consensus 154 ICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 154 ICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred cChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 499999887543 33 3455677999999994
No 12
>PRK05337 beta-hexosaminidase; Provisional
Probab=50.49 E-value=71 Score=26.40 Aligned_cols=61 Identities=11% Similarity=0.288 Sum_probs=42.5
Q ss_pred EEEeccCCCcchHHHHHhhhccc-eEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcc
Q 042984 18 VFLSFREDEISPSLSSAIEGSKI-SIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSD 84 (132)
Q Consensus 18 VFlsfrg~~i~~~l~~aI~~Sri-~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~ 84 (132)
++++|.|..+++...+.|++-++ .|++|.+|+.+- +++.......+... -+|.|+.+|-..
T Consensus 4 ~~~~~~g~~~~~~~~~~i~~~~~gGvilf~~n~~~~----~q~~~l~~~l~~~~--~~plli~iD~Eg 65 (337)
T PRK05337 4 LMLDVAGTELTAEERERLQHPLVGGVILFARNFEDP----AQLRELTAAIRAAV--RPPLLIAVDQEG 65 (337)
T ss_pred EEEeCCCCCCCHHHHHHHHccCceEEEEECCCCCCH----HHHHHHHHHHHHhc--CCCCEEEEecCC
Confidence 67899999999988888987666 566777888652 45655555444222 258888877644
No 13
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=50.47 E-value=7.4 Score=31.76 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=34.4
Q ss_pred hhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEe-ecCCccccc
Q 042984 36 EGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFY-RVDPSDVRN 87 (132)
Q Consensus 36 ~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy-~v~ps~V~~ 87 (132)
+.|++.+|....+|....||--|-..+-+-. .-+...||.| .++-+-+..
T Consensus 233 ~rC~~~~VF~~~~Y~~K~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~dG 283 (329)
T COG4916 233 IRCVVTTVFNTGSYICKSTCHIEGLEGRLNP--ILDTGFRIKYLYADNIAIDG 283 (329)
T ss_pred ceEEEEEEEeCCceEEeeeeccchhhccccc--cccccceEEEEecCCccccc
Confidence 3688889999999999999999887653221 1135667766 555555443
No 14
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=39.33 E-value=33 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCcchHHHHHhhhccceEEEeecCcccc
Q 042984 24 EDEISPSLSSAIEGSKISIVIFSEGYASS 52 (132)
Q Consensus 24 g~~i~~~l~~aI~~Sri~IvV~S~~y~~S 52 (132)
+....+.+++.|++|.+.|.++-.+|...
T Consensus 39 ~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 39 DQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 35556788999999999999999999654
No 15
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=37.64 E-value=97 Score=18.93 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeee
Q 042984 32 SSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVV 74 (132)
Q Consensus 32 ~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vi 74 (132)
.++++...-.++++++.+.-+. -.++..+.+..+.+++.||
T Consensus 28 ~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 28 YEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred HHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence 4566667888899999965543 3566666666666776654
No 16
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=33.01 E-value=85 Score=22.94 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhhChHHHHHHHHHHHHhhcc
Q 042984 92 FGDSFSELEERFKEKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 92 ~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~ 123 (132)
..+.+.+...++..++....+|+.+..+|.++
T Consensus 132 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (164)
T TIGR00295 132 IDEVIKKLEERLGKNHPSIERARKLKEELERL 163 (164)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 46777777788888888999999999999875
No 17
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=32.29 E-value=88 Score=22.03 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=31.2
Q ss_pred HHHHHhh--hccceEEEeecCccccHHHH--HHHHHHHHHHH-hcCCeeeeEEeecCCcccccccCchH
Q 042984 30 SLSSAIE--GSKISIVIFSEGYASSRWCL--NELVKILEIKN-KYGQIVVPVFYRVDPSDVRNQTGTFG 93 (132)
Q Consensus 30 ~l~~aI~--~Sri~IvV~S~~y~~S~wCl--~EL~~i~~~~~-~~~~~viPIfy~v~ps~V~~q~g~~~ 93 (132)
+..++|. +.+..||-|.. +||. ..+..+++... +-... -+||+|+..++..-...|+
T Consensus 4 ~~d~~i~~~~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~dva~~y~ 65 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVPVYTQYFD 65 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccHHHHHhcC
Confidence 3445565 45666666644 6773 34444444332 22222 5789999988876544333
No 18
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=29.14 E-value=59 Score=23.25 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=32.1
Q ss_pred EEEeccC----CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHH
Q 042984 18 VFLSFRE----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKIL 63 (132)
Q Consensus 18 VFlsfrg----~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~ 63 (132)
-||.=.| ..+...|+++|..-...|+|+...|-.+ ||.||+.+.
T Consensus 47 efL~~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~~ 94 (130)
T PF11074_consen 47 EFLADPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKT--RLKELAELF 94 (130)
T ss_pred HHhccCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHHh
Confidence 3555434 3355677888887768899999988765 899998764
No 19
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.92 E-value=50 Score=22.13 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.0
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
++++..+.|..||..|.
T Consensus 86 ~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 86 ESPEEREEWIHAIQTVA 102 (102)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 45788999999998874
No 20
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=26.90 E-value=1.3e+02 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=42.8
Q ss_pred hccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHH
Q 042984 37 GSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSEL 99 (132)
Q Consensus 37 ~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~ 99 (132)
.+...||+|+.-|--+.=-..|+...+.+ .+-.+++|=||.-+|.....|+-.+.+-+..|
T Consensus 37 ~~~~~li~i~DvfG~~~~n~r~~Adk~A~--~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~ 97 (242)
T KOG3043|consen 37 SSKKVLIVIQDVFGFQFPNTREGADKVAL--NGYTVLVPDFFRGDPWSPSLQKSERPEWMKGH 97 (242)
T ss_pred CCCeEEEEEEeeeccccHHHHHHHHHHhc--CCcEEEcchhhcCCCCCCCCChhhhHHHHhcC
Confidence 34578999999998765445555544433 24458899999889999998886666555443
No 21
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.32 E-value=39 Score=21.96 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.6
Q ss_pred HhhhccceEEEeecCccccHHHHH
Q 042984 34 AIEGSKISIVIFSEGYASSRWCLN 57 (132)
Q Consensus 34 aI~~Sri~IvV~S~~y~~S~wCl~ 57 (132)
.|++. -|+|||+.+.+.+||.+
T Consensus 4 ~i~~~--~vvvf~k~~~~~~~Cp~ 25 (90)
T cd03028 4 LIKEN--PVVLFMKGTPEEPRCGF 25 (90)
T ss_pred hhccC--CEEEEEcCCCCCCCCcH
Confidence 34443 46668888887777753
No 22
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=24.89 E-value=1.3e+02 Score=24.41 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=33.5
Q ss_pred cchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcC
Q 042984 27 ISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYG 70 (132)
Q Consensus 27 i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~ 70 (132)
|.++-+..|++-|..-.=. .+|++-.-|..||..+-+.+++.+
T Consensus 198 Idp~rL~~IR~~Rl~~lg~-s~Ya~~~~i~~El~~A~~l~~k~~ 240 (269)
T PRK05339 198 IDPERLIEIRKERLPNLGL-SRYASLEQCREELAEAERLFRREG 240 (269)
T ss_pred CCHHHHHHHHHHHhcccCc-CcCCCHHHHHHHHHHHHHHHHHcC
Confidence 6788888998888754333 689999999999999877666543
No 23
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=24.73 E-value=1.1e+02 Score=26.17 Aligned_cols=45 Identities=29% Similarity=0.538 Sum_probs=30.8
Q ss_pred HhhhccceEEEeecCcc----ccHHHHH-H-HHHHHHHHHhcCCeeeeEEe
Q 042984 34 AIEGSKISIVIFSEGYA----SSRWCLN-E-LVKILEIKNKYGQIVVPVFY 78 (132)
Q Consensus 34 aI~~Sri~IvV~S~~y~----~S~wCl~-E-L~~i~~~~~~~~~~viPIfy 78 (132)
.|..+|--++|--..|+ .|+-|-+ | |.+..+|...++.++||||-
T Consensus 191 ~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFA 241 (501)
T KOG1136|consen 191 WIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFA 241 (501)
T ss_pred hhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeee
Confidence 35666766666545555 3666643 3 45567898889999999994
No 24
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=24.29 E-value=80 Score=18.97 Aligned_cols=17 Identities=29% Similarity=0.437 Sum_probs=13.9
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
.+++..++|..||..+.
T Consensus 85 ~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 85 ESEEEREEWVDALRKAI 101 (102)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 35788999999998765
No 25
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=23.14 E-value=91 Score=19.22 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=14.1
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
.+++....|..||..+.
T Consensus 87 ~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 87 ESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999874
No 26
>TIGR02453 conserved hypothetical protein TIGR02453. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.
Probab=22.82 E-value=1.2e+02 Score=23.51 Aligned_cols=54 Identities=20% Similarity=0.479 Sum_probs=36.8
Q ss_pred eeeeEEe-ecCCcccccccCchH---HHHHHHHHHhhhChHHHHHHHHHHHHhhcccCccc
Q 042984 72 IVVPVFY-RVDPSDVRNQTGTFG---DSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128 (132)
Q Consensus 72 ~viPIfy-~v~ps~V~~q~g~~~---~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~ 128 (132)
.--|-|| +++|....-..|-|. +.+....+... +.-+.|+.+|.......||.+
T Consensus 94 ~~~~gyY~hi~p~~~~~g~G~~~p~~~~L~~iR~~I~---~~~~~~~~il~~~~~~~~f~~ 151 (217)
T TIGR02453 94 LEAPGFYLHLQPDGSFAGGGLWGPEAETLAAVRAAIA---ENPDGWKAAVAALKFLRGFPL 151 (217)
T ss_pred CCCceEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH---hCHHHHHHHHhChhhhccCCC
Confidence 4577887 999988777777664 55665555543 334788888877765566543
No 27
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=22.49 E-value=54 Score=21.82 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhhcccC
Q 042984 107 IDMLQTWRIAMREAANLSG 125 (132)
Q Consensus 107 ~e~v~~Wr~AL~~v~~~~G 125 (132)
.+-+.+|+.||..+.+-.+
T Consensus 23 ~~Al~~W~~aL~k~~~~~~ 41 (80)
T PF10579_consen 23 QQALQKWRKALEKITDRED 41 (80)
T ss_pred HHHHHHHHHHHhhcCChHH
Confidence 5669999999999988654
No 28
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=22.33 E-value=42 Score=29.50 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=20.8
Q ss_pred ccCchHHHHHHHHHHhhhChHHHHHHHHHHHH
Q 042984 88 QTGTFGDSFSELEERFKEKIDMLQTWRIAMRE 119 (132)
Q Consensus 88 q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~ 119 (132)
|+|.|.+.+....++ +..+..+||.++..
T Consensus 307 ~sG~fak~~m~d~~~---~~~~l~~~r~~~~~ 335 (487)
T PRK05225 307 ISGEFSSTMMADWAN---DDKKLLTWREETGK 335 (487)
T ss_pred hccHHHHHHHHHHhc---CChHHHHHHHHhhc
Confidence 578888777765543 35788999998754
No 29
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.31 E-value=86 Score=20.90 Aligned_cols=18 Identities=11% Similarity=0.160 Sum_probs=14.7
Q ss_pred hChHHHHHHHHHHHHhhc
Q 042984 105 EKIDMLQTWRIAMREAAN 122 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~ 122 (132)
.+++...+|..||..+.+
T Consensus 83 ~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 83 RTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 357888999999998764
No 30
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=22.30 E-value=79 Score=21.23 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=14.3
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
++++.++.|..|+.+|+
T Consensus 92 ~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 92 KNEEEMTLWVNCICKLC 108 (108)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 46788999999998874
No 31
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=21.76 E-value=96 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.5
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|.+||..|-+.
T Consensus 84 ~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 84 ETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 4578899999999988653
No 32
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.91 E-value=52 Score=19.86 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=19.1
Q ss_pred CceeEEEeccCCCcchHHHHHhh
Q 042984 14 TKYDVFLSFREDEISPSLSSAIE 36 (132)
Q Consensus 14 ~~ydVFlsfrg~~i~~~l~~aI~ 36 (132)
..+|=.+||-|.+|++...++|+
T Consensus 18 vdWd~wvSf~GrPltdevK~a~k 40 (49)
T PF06543_consen 18 VDWDKWVSFDGRPLTDEVKEAMK 40 (49)
T ss_pred cchHHheeeCCeeCCHHHHHHHH
Confidence 34677899999999998888775
No 33
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.75 E-value=86 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHh
Q 042984 106 KIDMLQTWRIAMREA 120 (132)
Q Consensus 106 ~~e~v~~Wr~AL~~v 120 (132)
+++..+.|..||..+
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 467889999999875
No 34
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=20.18 E-value=84 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=13.1
Q ss_pred hChHHHHHHHHHHHHh
Q 042984 105 EKIDMLQTWRIAMREA 120 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v 120 (132)
++++..+.|..||.+|
T Consensus 91 ~s~~er~~WI~ai~~~ 106 (106)
T cd01238 91 PTEELRKRWIKALKQV 106 (106)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4577889999999875
No 35
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=20.10 E-value=88 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.5
Q ss_pred hChHHHHHHHHHHHH
Q 042984 105 EKIDMLQTWRIAMRE 119 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~ 119 (132)
++++.+++|..||..
T Consensus 81 ~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 81 ETLDDLSQWVNHLIT 95 (96)
T ss_pred CCHHHHHHHHHHHHh
Confidence 457889999999975
Done!