Query 042984
Match_columns 132
No_of_seqs 136 out of 1110
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 7.6E-47 2.6E-51 289.5 9.2 119 11-131 31-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1E-45 3.5E-50 278.0 8.3 116 12-129 5-152 (176)
3 3h16_A TIR protein; bacteria T 99.9 1.7E-28 6E-33 179.0 1.5 106 10-120 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.8 2.1E-22 7.2E-27 146.4 -2.1 99 12-117 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.7 1.3E-18 4.3E-23 126.4 0.1 75 12-86 2-111 (149)
6 2j67_A TOLL like receptor 10; 99.7 4.3E-18 1.5E-22 127.3 2.1 74 12-85 32-140 (178)
7 2js7_A Myeloid differentiation 99.7 5.8E-18 2E-22 124.5 1.3 70 13-82 14-117 (160)
8 1t3g_A X-linked interleukin-1 99.6 2.7E-16 9.2E-21 115.5 5.3 59 25-83 55-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.3 3.4E-13 1.2E-17 118.4 2.6 71 12-82 667-774 (844)
10 1eiw_A Hypothetical protein MT 96.3 0.0018 6.3E-08 44.5 2.1 60 14-77 3-74 (111)
11 3hyn_A Putative signal transdu 92.3 0.16 5.4E-06 38.0 4.3 71 25-98 67-138 (189)
12 4gvf_A Beta-hexosaminidase; TI 54.1 31 0.0011 27.5 6.3 63 18-86 4-67 (349)
13 3dt5_A Uncharacterized protein 40.2 5.6 0.00019 26.8 -0.2 38 49-86 37-78 (135)
14 4g6c_A Beta-hexosaminidase 1; 39.9 56 0.0019 26.0 5.7 62 18-86 14-76 (348)
15 4a6h_A Phosphatidylinositol 4, 36.9 21 0.00071 23.8 2.4 20 105-124 101-120 (120)
16 2yry_A Pleckstrin homology dom 33.4 28 0.00097 22.0 2.5 19 105-123 103-121 (122)
17 2cof_A Protein KIAA1914; PH do 28.9 35 0.0012 21.3 2.4 19 105-123 84-102 (107)
18 2i5f_A Pleckstrin; PH domain, 28.9 38 0.0013 20.8 2.5 17 105-121 92-108 (109)
19 2d9v_A Pleckstrin homology dom 28.4 41 0.0014 22.0 2.7 22 105-126 97-118 (130)
20 1v5p_A Pleckstrin homology dom 28.2 36 0.0012 22.6 2.4 20 105-124 103-122 (126)
21 2coc_A FYVE, rhogef and PH dom 27.1 41 0.0014 22.0 2.5 18 105-122 89-106 (112)
22 1upq_A PEPP1; PH domain, phosp 26.2 44 0.0015 21.1 2.5 22 105-126 92-113 (123)
23 1tu9_A Hypothetical protein PA 25.9 16 0.00055 24.3 0.3 42 79-124 85-128 (134)
24 1wgq_A FYVE, rhogef and PH dom 23.6 53 0.0018 20.4 2.5 18 105-122 86-103 (109)
25 3aj4_A Pleckstrin homology dom 23.4 54 0.0019 20.4 2.5 17 105-121 94-110 (112)
26 1x1g_A Pleckstrin 2; PH domain 23.2 53 0.0018 20.9 2.5 19 105-123 107-125 (129)
27 2dkp_A Pleckstrin homology dom 22.7 55 0.0019 20.8 2.5 19 105-123 102-120 (128)
28 1x05_A Pleckstrin; PH domain, 22.2 58 0.002 20.8 2.5 19 105-123 103-121 (129)
29 1v89_A Hypothetical protein KI 22.1 55 0.0019 20.3 2.3 19 105-123 95-113 (118)
30 2d9y_A Pleckstrin homology dom 21.9 58 0.002 20.2 2.4 19 105-123 92-110 (117)
31 1dro_A Beta-spectrin; cytoskel 21.1 60 0.0021 20.8 2.4 20 105-124 102-121 (122)
32 4hde_A SCO1/SENC family lipopr 21.1 2E+02 0.0067 19.4 6.2 59 19-83 17-79 (170)
33 2dn6_A KIAA0640 protein; PH do 20.9 60 0.002 20.1 2.3 20 105-124 86-105 (115)
34 2nrl_A Myoglobin; transport pr 20.9 23 0.00078 24.1 0.2 43 79-124 94-136 (147)
35 2dhk_A TBC1 domain family memb 20.8 64 0.0022 20.6 2.5 17 105-121 87-103 (119)
36 2w2x_D 1-phosphatidylinositol- 20.7 53 0.0018 21.3 2.1 19 105-123 102-120 (124)
37 2d9x_A Oxysterol binding prote 20.5 61 0.0021 20.6 2.3 20 105-124 87-106 (120)
38 1u5d_A SKAP55, SRC kinase-asso 20.4 63 0.0022 19.5 2.3 18 105-122 88-105 (108)
39 1wjm_A Beta-spectrin III; PH d 20.3 61 0.0021 20.6 2.3 18 105-122 100-117 (123)
40 1x1f_A Signal-transducing adap 20.3 61 0.0021 22.3 2.4 20 105-124 96-115 (149)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.6e-47 Score=289.54 Aligned_cols=119 Identities=42% Similarity=0.807 Sum_probs=109.7
Q ss_pred CCCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984 11 IPHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE 58 (132)
Q Consensus 11 ~~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E 58 (132)
.+.++||||||||| +.|.++|++||++||++|+|||+||++|.|||+|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 47899999999999 5688999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccCCC
Q 042984 59 LVKILEIKNK-YGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSI 131 (132)
Q Consensus 59 L~~i~~~~~~-~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~ 131 (132)
|++|++|+++ +++.||||||+|+|++||+|+|.||++|.+|++++. ++++++||.||++||+++||++.+.
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence 9999999875 579999999999999999999999999999998763 7899999999999999999999865
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-45 Score=277.97 Aligned_cols=116 Identities=46% Similarity=0.768 Sum_probs=101.5
Q ss_pred CCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHH
Q 042984 12 PHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNEL 59 (132)
Q Consensus 12 ~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL 59 (132)
+.++||||||||| +.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 4579999999999 56888999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984 60 VKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH 129 (132)
Q Consensus 60 ~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~ 129 (132)
++|++|.+.+++.||||||+|+|++||+|+|.||++|.+|+++ .+.+++++||.||++|++++||++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999889999999999999999999999999999999987 5689999999999999999999974
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=1.7e-28 Score=178.98 Aligned_cols=106 Identities=16% Similarity=0.314 Sum_probs=87.8
Q ss_pred CCCCCceeEEEeccC-------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984 10 MIPHTKYDVFLSFRE-------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE 58 (132)
Q Consensus 10 ~~~~~~ydVFlsfrg-------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E 58 (132)
.++.++|||||||+| +.+.++|.++|++|+++|+|+|+||+.|.||++|
T Consensus 15 ~~~~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 15 LTSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp ---CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred cCCCCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 357799999999999 5577899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 042984 59 LVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREA 120 (132)
Q Consensus 59 L~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v 120 (132)
|..++++...+++.||||||+|+|++|++|+|.|+++|..... ...+.++-..|.++
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 9999998777788999999999999999999999998864332 23345554555443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.82 E-value=2.1e-22 Score=146.42 Aligned_cols=99 Identities=15% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHH
Q 042984 12 PHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNEL 59 (132)
Q Consensus 12 ~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL 59 (132)
.++.|||||||+| +.|.++|.++|++||+.|+|||+||+.|.||+.||
T Consensus 7 ~~k~YDvFISy~~~D~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El 86 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQM 86 (146)
T ss_dssp TSSSEEEEEECCGGGHHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHH
T ss_pred CCCcceEEEeCChhhHHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHH
Confidence 5679999999999 55778899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeeeEEeecCCcc----cccccC----chHHHHHHHHHHhhhChHHHHHHHHHH
Q 042984 60 VKILEIKNKYGQIVVPVFYRVDPSD----VRNQTG----TFGDSFSELEERFKEKIDMLQTWRIAM 117 (132)
Q Consensus 60 ~~i~~~~~~~~~~viPIfy~v~ps~----V~~q~g----~~~~~f~~~~~~~~~~~e~v~~Wr~AL 117 (132)
..++.+...+...||||||+|++.+ ++.... ...+.|.+ -.+.|.+|+.||
T Consensus 87 ~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~-------l~~~v~~~~~~~ 145 (146)
T 3ub2_A 87 LQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQ-------VKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHH-------HHHHHHHHHTTC
T ss_pred HHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHH-------HHHHHHHHHHhc
Confidence 9999876333347789999998554 455432 12344433 347789998876
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.70 E-value=1.3e-18 Score=126.44 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=64.0
Q ss_pred CCCceeEEEeccC---------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984 12 PHTKYDVFLSFRE---------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE 58 (132)
Q Consensus 12 ~~~~ydVFlsfrg---------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E 58 (132)
.++.|||||||+| +.+.++|.++|++|++.|+|+|+||+.|.||+.|
T Consensus 2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 3578999999999 4567899999999999999999999999999999
Q ss_pred HHHHHH-HHHhcCCeeeeEEe-ecCCcccc
Q 042984 59 LVKILE-IKNKYGQIVVPVFY-RVDPSDVR 86 (132)
Q Consensus 59 L~~i~~-~~~~~~~~viPIfy-~v~ps~V~ 86 (132)
|..++. +.+.+++.|||||| ++++.++.
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999874 44567788999999 46665553
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.69 E-value=4.3e-18 Score=127.34 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=59.7
Q ss_pred CCCceeEEEeccC---------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984 12 PHTKYDVFLSFRE---------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE 58 (132)
Q Consensus 12 ~~~~ydVFlsfrg---------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E 58 (132)
.++.|||||||+| +.|.++|.++|++|+++|+|+|+||+.|.||++|
T Consensus 32 ~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~E 111 (178)
T 2j67_A 32 RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYE 111 (178)
T ss_dssp CSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTH
T ss_pred CCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHH
Confidence 5679999999999 4677899999999999999999999999999999
Q ss_pred HHHHHHH-HHhcCCeeeeEEee-cCCccc
Q 042984 59 LVKILEI-KNKYGQIVVPVFYR-VDPSDV 85 (132)
Q Consensus 59 L~~i~~~-~~~~~~~viPIfy~-v~ps~V 85 (132)
|..++.+ .+.+++.||||||+ +.+.++
T Consensus 112 l~~a~~~~~~~~~~~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 112 FYFAHHNLFHENSDHIILILLEPIPFYCI 140 (178)
T ss_dssp HHHTTCC-------CEEEEESSCCCGGGS
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence 9999854 45567789999995 444443
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.67 E-value=5.8e-18 Score=124.50 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCceeEEEeccC--------------------------------CCcchHHHHHhh-hccceEEEeecCccccHHHHHHH
Q 042984 13 HTKYDVFLSFRE--------------------------------DEISPSLSSAIE-GSKISIVIFSEGYASSRWCLNEL 59 (132)
Q Consensus 13 ~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~-~Sri~IvV~S~~y~~S~wCl~EL 59 (132)
++.|||||||+| +.|.++|.++|+ +|+++|+|+|+||+.|.||++|+
T Consensus 14 ~~~yDvFISys~~D~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El 93 (160)
T 2js7_A 14 PERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQT 93 (160)
T ss_dssp TTCEEEEEECCGGGHHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHH
T ss_pred CcceEEEEEcccccHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHH
Confidence 578999999999 456788999999 79999999999999999999999
Q ss_pred HHHHHHH-HhcCCeeeeEEeecCC
Q 042984 60 VKILEIK-NKYGQIVVPVFYRVDP 82 (132)
Q Consensus 60 ~~i~~~~-~~~~~~viPIfy~v~p 82 (132)
..++.+. +.+++.||||||+.-+
T Consensus 94 ~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 94 KFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHccCCCEEEEEEEcccc
Confidence 9999864 4455689999997543
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=115.45 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCcchHHHHHhhhccceEEEeecCcc-ccHHHHHHHHHHHHHH-HhcCCeeeeEEeecCCc
Q 042984 25 DEISPSLSSAIEGSKISIVIFSEGYA-SSRWCLNELVKILEIK-NKYGQIVVPVFYRVDPS 83 (132)
Q Consensus 25 ~~i~~~l~~aI~~Sri~IvV~S~~y~-~S~wCl~EL~~i~~~~-~~~~~~viPIfy~v~ps 83 (132)
+.|.++|.++|++||..|+|+|+||+ .|.||+.|+..++.+. +.+++.||||+|+-.+.
T Consensus 55 ~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 55 GTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp TTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred cchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 44567899999999999999999997 9999999999999875 56678999999975443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.32 E-value=3.4e-13 Score=118.41 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=61.4
Q ss_pred CCCceeEEEeccC------------------------------------CCcchHHHHHhhhccceEEEeecCccccHHH
Q 042984 12 PHTKYDVFLSFRE------------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWC 55 (132)
Q Consensus 12 ~~~~ydVFlsfrg------------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wC 55 (132)
.+++|||||||++ +.|.++|.++|++||..|+|+|++|+.|.||
T Consensus 667 ~~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc 746 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWC 746 (844)
T ss_dssp SCCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTST
T ss_pred cceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHH
Confidence 4679999999999 3466899999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCCeeeeEEeecCC
Q 042984 56 LNELVKILEIK-NKYGQIVVPVFYRVDP 82 (132)
Q Consensus 56 l~EL~~i~~~~-~~~~~~viPIfy~v~p 82 (132)
.+|+..++.+. +++++.||||||+..|
T Consensus 747 ~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 747 LEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp THHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999887543 5667899999996544
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.26 E-value=0.0018 Score=44.54 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=41.7
Q ss_pred CceeEEEeccCCCcchHHH------------HHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEE
Q 042984 14 TKYDVFLSFREDEISPSLS------------SAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVF 77 (132)
Q Consensus 14 ~~ydVFlsfrg~~i~~~l~------------~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIf 77 (132)
.+|.+||||..+.--+.|. +.|+.|.+.||..+++...|+||..|+....+ .+..|+-|.
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l~~~~f~~~~~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~----~gkpIigV~ 74 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAVIVLAGLWGTRRDEILGAVDLARK----SSKPIITVR 74 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHHHHHCSCEEECCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTCCEEEEC
T ss_pred ceEEEEEecccHhHHHHHHHHHhCCCCeeecCccccCCEEEEEeCCCcCCChHHHHHHHHHHH----cCCCEEEEE
Confidence 4799999999854111221 23567888899888888999999999976543 344454443
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=92.28 E-value=0.16 Score=37.96 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeec-CCcccccccCchHHHHHH
Q 042984 25 DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRV-DPSDVRNQTGTFGDSFSE 98 (132)
Q Consensus 25 ~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v-~ps~V~~q~g~~~~~f~~ 98 (132)
..|-..|.+.|..|+..|+++|++...|.|-..|+..+++ +.+..||-|.-+- ..+++..-.|.+......
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~ 138 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKD 138 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHhh
Confidence 3466788999999999999999999999999999987762 2455777776542 244566544555444433
No 12
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=54.09 E-value=31 Score=27.55 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=44.1
Q ss_pred EEEeccCCCcchHHHHHhhhccce-EEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcccc
Q 042984 18 VFLSFREDEISPSLSSAIEGSKIS-IVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVR 86 (132)
Q Consensus 18 VFlsfrg~~i~~~l~~aI~~Sri~-IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~ 86 (132)
+.+.|.|..+++...+.|++-++. |++|.+|+.+ ..++..+....++... +|+++.+|...-+
T Consensus 4 ~m~g~~G~~l~~~~~~~i~~~~vGGvilf~rN~~~----~~q~~~l~~~lq~~~~--iPlli~vD~egG~ 67 (349)
T 4gvf_A 4 VMLNVEGCELDAEEREILAHPLVGGLILFTRNYHD----PEQLRELVRQIRAASR--NHLVVAVDQEGGR 67 (349)
T ss_dssp EEECCSSSSCCHHHHHHHTCTTEEEEEECGGGCSC----HHHHHHHHHHHHHHCS--SCCEEEECEEETT
T ss_pred EEEeCCCCCCCHHHHHHHHcCCceEEEEeCCCCCC----HHHHHHHHHHHHHhcC--CCceeeecCCCce
Confidence 567889999999999999998885 5567778764 2455555444333222 7999999887544
No 13
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=40.18 E-value=5.6 Score=26.85 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=25.2
Q ss_pred ccccHHHHHHHHHHHHHHHh--c--CCeeeeEEeecCCcccc
Q 042984 49 YASSRWCLNELVKILEIKNK--Y--GQIVVPVFYRVDPSDVR 86 (132)
Q Consensus 49 y~~S~wCl~EL~~i~~~~~~--~--~~~viPIfy~v~ps~V~ 86 (132)
|+--.-.-||+..|+.|++- + -.+|+|.-++.....+.
T Consensus 37 yvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkia 78 (135)
T 3dt5_A 37 YVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIA 78 (135)
T ss_dssp SCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCT
T ss_pred HheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhc
Confidence 44444568999999999753 1 24688887766555443
No 14
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=39.86 E-value=56 Score=25.99 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=44.5
Q ss_pred EEEeccCCCcchHHHHHhhhccce-EEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcccc
Q 042984 18 VFLSFREDEISPSLSSAIEGSKIS-IVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVR 86 (132)
Q Consensus 18 VFlsfrg~~i~~~l~~aI~~Sri~-IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~ 86 (132)
+.+.+.|..+++...+.|++-++. |+.|.+|+.+ ..+|.......+..+ +|+++.+|...-+
T Consensus 14 ~~~~~~G~~l~~~~~~~i~~~~vGGvilf~~n~~~----~~ql~~l~~~i~~~~---iPlli~vD~EgG~ 76 (348)
T 4g6c_A 14 VMLDVVGTTLSRDDARRLAHPNTGGVILFARHFQN----RAQLTALTDSIRAVR---EDILIAVDHEGGR 76 (348)
T ss_dssp EEECCSSSSCCHHHHHHHHSTTEEEEEECGGGCSC----HHHHHHHHHHHHHHC---TTCEEEECEEETT
T ss_pred EEEeCCCCCCCHHHHHHHHcCCceEEEEcCCCCCC----HHHHHHHHHHHHHhC---CCceEEecCCCCc
Confidence 678899999999999999998875 4457888865 345555544433333 7999988886543
No 15
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=36.89 E-value=21 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=15.7
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++.+..+.|-+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 45788999999999998764
No 16
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.45 E-value=28 Score=22.03 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=15.9
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..+..+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999998765
No 17
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.89 E-value=35 Score=21.29 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=15.6
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4578899999999988754
No 18
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=28.87 E-value=38 Score=20.84 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.2
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
++++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 19
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.41 E-value=41 Score=22.01 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.7
Q ss_pred hChHHHHHHHHHHHHhhcccCc
Q 042984 105 EKIDMLQTWRIAMREAANLSGF 126 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~G~ 126 (132)
++++..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4578899999999999876543
No 20
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=28.20 E-value=36 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.0
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 45788999999999998764
No 21
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.08 E-value=41 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.2
Q ss_pred hChHHHHHHHHHHHHhhc
Q 042984 105 EKIDMLQTWRIAMREAAN 122 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~ 122 (132)
++++..++|..||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 458899999999998764
No 22
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=26.19 E-value=44 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=15.6
Q ss_pred hChHHHHHHHHHHHHhhcccCc
Q 042984 105 EKIDMLQTWRIAMREAANLSGF 126 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~G~ 126 (132)
++++....|..||..+....+-
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~ 113 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGD 113 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHhcccC
Confidence 4578899999999999876653
No 23
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=25.86 E-value=16 Score=24.26 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=26.5
Q ss_pred ecCCcccccccCchHHHHHHHHHHhh--hChHHHHHHHHHHHHhhccc
Q 042984 79 RVDPSDVRNQTGTFGDSFSELEERFK--EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 79 ~v~ps~V~~q~g~~~~~f~~~~~~~~--~~~e~v~~Wr~AL~~v~~~~ 124 (132)
+|+|.+-. .+++++...-+.++ -++|-...|.+++..+++.-
T Consensus 85 gV~p~~f~----~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 85 DIRPELYD----LWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp CCCTTHHH----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHH----HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 45555544 23555555433344 25788899999999988754
No 24
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.63 E-value=53 Score=20.36 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.8
Q ss_pred hChHHHHHHHHHHHHhhc
Q 042984 105 EKIDMLQTWRIAMREAAN 122 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~ 122 (132)
++++..+.|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 457889999999998764
No 25
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=23.44 E-value=54 Score=20.35 Aligned_cols=17 Identities=18% Similarity=0.556 Sum_probs=14.1
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
++++..+.|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 26
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.22 E-value=53 Score=20.94 Aligned_cols=19 Identities=11% Similarity=0.129 Sum_probs=15.8
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..+.+-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998753
No 27
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=22.71 E-value=55 Score=20.76 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.6
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999988764
No 28
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=22.20 E-value=58 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.8
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..+.+.
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 4578899999999998764
No 29
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.10 E-value=55 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.3
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4577889999999988753
No 30
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.90 E-value=58 Score=20.24 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=15.7
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++++..+.|..||..+...
T Consensus 92 ~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 4578899999999998764
No 31
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=21.09 E-value=60 Score=20.78 Aligned_cols=20 Identities=5% Similarity=0.315 Sum_probs=16.2
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++++.++.|-.||..+.+.+
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 45788999999999887643
No 32
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=21.07 E-value=2e+02 Score=19.36 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=34.1
Q ss_pred EEeccCCCcchHHHHHhhhccceEEEee-cCccccHHHHHHHH---HHHHHHHhcCCeeeeEEeecCCc
Q 042984 19 FLSFREDEISPSLSSAIEGSKISIVIFS-EGYASSRWCLNELV---KILEIKNKYGQIVVPVFYRVDPS 83 (132)
Q Consensus 19 Flsfrg~~i~~~l~~aI~~Sri~IvV~S-~~y~~S~wCl~EL~---~i~~~~~~~~~~viPIfy~v~ps 83 (132)
+....|+.++.+-+ +. ++.++.|- ..+ -.||..++. .+.+..+..+..|..|+..|+|.
T Consensus 17 L~d~~G~~v~l~d~---~G-k~vll~F~~t~C--p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 17 FTNQDGKPFGTKDL---KG-KVWVADFMFTNC--QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp EECTTSCEEEHHHH---TT-SCEEEEEECTTC--SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred EECCCCCEEeHHHh---CC-CEEEEEEECCCC--CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 56677777764433 33 45555453 222 247855544 44444444566688888888885
No 33
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.95 E-value=60 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.9
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++++..+.|..||..+....
T Consensus 86 ~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 86 SDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 35778899999999887643
No 34
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=20.89 E-value=23 Score=24.08 Aligned_cols=43 Identities=7% Similarity=-0.067 Sum_probs=26.6
Q ss_pred ecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhccc
Q 042984 79 RVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 79 ~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~ 124 (132)
+|+|.+-..-...+-.++.++ . .-++|....|.+++..|++.-
T Consensus 94 ~V~p~~f~~~~~~Ll~~l~~~-~--~~t~e~~~AW~~~~~~v~~~l 136 (147)
T 2nrl_A 94 KIPINNFKLISEVLVKVMQEK-A--GLDAGGQTALRNVMGIIIADL 136 (147)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH-S--CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHH
Confidence 566666553333333444433 2 235788899999999998754
No 35
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.77 E-value=64 Score=20.56 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=14.2
Q ss_pred hChHHHHHHHHHHHHhh
Q 042984 105 EKIDMLQTWRIAMREAA 121 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~ 121 (132)
++++..++|..||..+.
T Consensus 87 ~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 87 ATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45788999999999875
No 36
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=20.67 E-value=53 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.2
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 042984 105 EKIDMLQTWRIAMREAANL 123 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~ 123 (132)
++.+..+.|..||..++..
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4578899999999988754
No 37
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.51 E-value=61 Score=20.59 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.0
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++++..+.|..||..+....
T Consensus 87 ~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 87 TDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 45788999999999877654
No 38
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=20.43 E-value=63 Score=19.54 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=14.4
Q ss_pred hChHHHHHHHHHHHHhhc
Q 042984 105 EKIDMLQTWRIAMREAAN 122 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~ 122 (132)
++++..+.|..||..+..
T Consensus 88 ~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 88 TSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 357888999999998754
No 39
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.35 E-value=61 Score=20.62 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.0
Q ss_pred hChHHHHHHHHHHHHhhc
Q 042984 105 EKIDMLQTWRIAMREAAN 122 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~ 122 (132)
++++.++.|..||..+..
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 457889999999998865
No 40
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.28 E-value=61 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.8
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 042984 105 EKIDMLQTWRIAMREAANLS 124 (132)
Q Consensus 105 ~~~e~v~~Wr~AL~~v~~~~ 124 (132)
++.+..+.|..||..|+.+.
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~ 115 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELS 115 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHccc
Confidence 45788999999999998765
Done!