Query 042985
Match_columns 122
No_of_seqs 232 out of 1426
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1515 Arylacetamide deacetyl 100.0 1.1E-30 2.4E-35 192.2 12.1 117 1-122 32-148 (336)
2 COG0657 Aes Esterase/lipase [L 99.8 9.9E-20 2.1E-24 133.1 9.1 76 41-122 60-135 (312)
3 PRK10162 acetyl esterase; Prov 99.8 2.7E-19 5.9E-24 131.5 9.1 82 32-122 55-137 (318)
4 PF07859 Abhydrolase_3: alpha/ 99.7 2.5E-17 5.4E-22 113.8 3.0 54 67-122 1-54 (211)
5 COG2272 PnbA Carboxylesterase 99.6 2.1E-15 4.5E-20 114.8 7.5 65 39-110 74-138 (491)
6 PF00135 COesterase: Carboxyle 99.5 2.4E-14 5.2E-19 110.5 2.9 64 41-109 105-168 (535)
7 cd00312 Esterase_lipase Estera 99.4 2.4E-13 5.2E-18 104.8 6.9 65 40-111 74-139 (493)
8 KOG4388 Hormone-sensitive lipa 99.4 2.6E-13 5.6E-18 105.1 5.6 58 62-121 394-451 (880)
9 KOG4627 Kynurenine formamidase 99.2 2.4E-11 5.2E-16 84.1 4.8 79 31-120 42-121 (270)
10 KOG1516 Carboxylesterase and r 99.1 1.1E-10 2.4E-15 91.2 5.4 68 39-111 91-158 (545)
11 KOG4389 Acetylcholinesterase/B 99.0 2E-10 4.4E-15 87.8 3.9 62 41-109 117-178 (601)
12 PF10340 DUF2424: Protein of u 99.0 1.7E-09 3.8E-14 81.0 7.2 72 44-121 105-182 (374)
13 PLN00021 chlorophyllase 98.3 6.9E-06 1.5E-10 60.7 8.4 75 32-119 24-101 (313)
14 COG1506 DAP2 Dipeptidyl aminop 98.2 6E-06 1.3E-10 66.1 7.3 70 32-108 363-434 (620)
15 TIGR01840 esterase_phb esteras 98.0 5.3E-06 1.1E-10 57.6 2.5 52 48-107 2-53 (212)
16 PRK10115 protease 2; Provision 97.7 0.00077 1.7E-08 54.8 10.7 72 32-110 414-487 (686)
17 TIGR02821 fghA_ester_D S-formy 97.5 0.00081 1.8E-08 48.5 7.9 55 45-106 27-81 (275)
18 PRK10566 esterase; Provisional 97.5 0.00055 1.2E-08 48.1 6.7 55 44-108 11-65 (249)
19 KOG2564 Predicted acetyltransf 97.2 0.0016 3.4E-08 47.7 6.5 68 35-113 51-118 (343)
20 PLN02442 S-formylglutathione h 97.2 0.0029 6.3E-08 46.0 7.8 57 43-106 30-86 (283)
21 PLN02385 hydrolase; alpha/beta 97.1 0.005 1.1E-07 45.7 8.7 52 45-107 74-125 (349)
22 PLN02652 hydrolase; alpha/beta 97.0 0.0034 7.4E-08 47.9 7.4 52 44-107 122-173 (395)
23 PF03403 PAF-AH_p_II: Platelet 97.0 0.00097 2.1E-08 50.6 4.3 40 62-107 98-137 (379)
24 PLN02298 hydrolase, alpha/beta 97.0 0.0041 9E-08 45.6 7.5 66 32-107 30-97 (330)
25 TIGR03101 hydr2_PEP hydrolase, 97.0 0.0044 9.5E-08 44.9 7.1 45 62-108 23-67 (266)
26 PF10503 Esterase_phd: Esteras 96.9 0.00061 1.3E-08 48.1 2.3 53 46-105 2-54 (220)
27 PF05448 AXE1: Acetyl xylan es 96.9 0.0053 1.2E-07 45.6 7.2 64 32-107 54-119 (320)
28 PF12146 Hydrolase_4: Putative 96.8 0.0036 7.7E-08 37.1 4.6 50 45-107 4-53 (79)
29 PF12740 Chlorophyllase2: Chlo 96.7 0.0039 8.6E-08 45.0 5.3 52 45-108 4-56 (259)
30 PF12695 Abhydrolase_5: Alpha/ 96.7 0.0015 3.3E-08 41.7 3.0 40 66-111 1-40 (145)
31 PRK05077 frsA fermentation/res 96.7 0.014 3E-07 44.8 8.4 64 34-108 168-233 (414)
32 PHA02857 monoglyceride lipase; 96.7 0.0076 1.6E-07 42.9 6.4 51 44-107 12-62 (276)
33 TIGR03100 hydr1_PEP hydrolase, 96.7 0.0094 2E-07 43.0 6.9 61 37-107 5-67 (274)
34 PRK10985 putative hydrolase; P 96.5 0.019 4.1E-07 42.3 7.5 43 62-108 56-98 (324)
35 PRK00870 haloalkane dehalogena 96.4 0.023 5.1E-07 41.1 7.6 62 35-107 22-83 (302)
36 PLN02511 hydrolase 96.2 0.038 8.3E-07 42.0 8.2 59 44-109 83-141 (388)
37 KOG4391 Predicted alpha/beta h 96.1 0.065 1.4E-06 38.2 8.0 66 31-107 51-116 (300)
38 KOG3847 Phospholipase A2 (plat 96.0 0.012 2.6E-07 43.8 4.1 40 62-107 116-155 (399)
39 COG3509 LpqC Poly(3-hydroxybut 95.8 0.014 3E-07 42.9 4.0 56 44-107 46-102 (312)
40 COG4099 Predicted peptidase [G 95.8 0.014 3E-07 43.2 3.9 30 43-75 172-202 (387)
41 TIGR00976 /NonD putative hydro 95.7 0.025 5.4E-07 44.9 5.3 55 45-107 9-63 (550)
42 KOG1455 Lysophospholipase [Lip 95.6 0.1 2.3E-06 38.5 7.8 54 44-107 39-92 (313)
43 PF12715 Abhydrolase_7: Abhydr 95.5 0.11 2.4E-06 39.6 8.0 70 32-107 86-170 (390)
44 TIGR01250 pro_imino_pep_2 prol 95.2 0.098 2.1E-06 36.4 6.4 42 62-108 23-64 (288)
45 PRK10673 acyl-CoA esterase; Pr 95.1 0.056 1.2E-06 37.7 5.0 40 62-108 14-53 (255)
46 PLN02211 methyl indole-3-aceta 95.1 0.05 1.1E-06 39.2 4.9 40 62-107 16-55 (273)
47 cd00707 Pancreat_lipase_like P 94.9 0.064 1.4E-06 38.9 4.9 52 62-116 34-85 (275)
48 PF07224 Chlorophyllase: Chlor 94.8 0.14 3E-06 37.4 6.3 54 44-109 32-86 (307)
49 TIGR03343 biphenyl_bphD 2-hydr 94.8 0.1 2.2E-06 37.0 5.7 43 64-110 30-73 (282)
50 PF01738 DLH: Dienelactone hyd 94.6 0.14 3E-06 35.4 5.9 50 46-107 2-51 (218)
51 PRK10749 lysophospholipase L2; 94.6 0.16 3.5E-06 37.5 6.5 39 63-107 53-91 (330)
52 KOG2100 Dipeptidyl aminopeptid 94.5 0.15 3.3E-06 42.2 6.7 73 32-109 498-570 (755)
53 PLN02872 triacylglycerol lipas 94.5 0.1 2.2E-06 39.9 5.4 73 32-107 42-117 (395)
54 PF00756 Esterase: Putative es 94.5 0.022 4.8E-07 40.0 1.7 30 44-76 7-37 (251)
55 PRK10439 enterobactin/ferric e 94.3 0.081 1.8E-06 40.7 4.5 54 44-105 193-249 (411)
56 COG0412 Dienelactone hydrolase 94.3 0.27 5.9E-06 34.9 6.9 59 35-105 3-62 (236)
57 PLN02824 hydrolase, alpha/beta 94.2 0.31 6.8E-06 35.0 7.2 37 64-107 29-65 (294)
58 TIGR03611 RutD pyrimidine util 94.0 0.18 3.8E-06 34.6 5.4 39 62-107 11-49 (257)
59 PLN02894 hydrolase, alpha/beta 94.0 0.23 5E-06 37.9 6.4 40 62-108 103-142 (402)
60 TIGR01836 PHA_synth_III_C poly 94.0 0.24 5.2E-06 36.8 6.4 59 41-108 44-105 (350)
61 COG0429 Predicted hydrolase of 93.8 0.46 1E-05 35.7 7.4 65 34-108 51-115 (345)
62 PF12697 Abhydrolase_6: Alpha/ 93.8 0.13 2.7E-06 34.3 4.2 35 67-108 1-35 (228)
63 KOG3101 Esterase D [General fu 93.7 0.28 6E-06 34.9 5.8 56 45-106 28-83 (283)
64 TIGR03695 menH_SHCHC 2-succiny 93.6 0.11 2.4E-06 35.1 3.8 37 65-108 2-38 (251)
65 KOG2281 Dipeptidyl aminopeptid 93.6 0.45 9.7E-06 38.9 7.5 65 41-109 622-688 (867)
66 TIGR03056 bchO_mg_che_rel puta 93.5 0.22 4.7E-06 34.9 5.3 40 62-108 26-65 (278)
67 TIGR02427 protocat_pcaD 3-oxoa 93.2 0.24 5.2E-06 33.6 5.0 40 62-108 11-50 (251)
68 PLN03084 alpha/beta hydrolase 93.0 0.53 1.1E-05 35.9 6.9 39 62-107 125-163 (383)
69 COG3458 Acetyl esterase (deace 92.8 0.75 1.6E-05 33.9 7.0 63 32-106 54-118 (321)
70 PLN02965 Probable pheophorbida 92.4 0.31 6.6E-06 34.4 4.7 38 66-109 5-42 (255)
71 PF07082 DUF1350: Protein of u 92.1 0.46 1E-05 34.2 5.2 41 66-108 18-58 (250)
72 PF02129 Peptidase_S15: X-Pro 92.1 0.97 2.1E-05 32.4 7.0 59 44-107 4-67 (272)
73 TIGR03502 lipase_Pla1_cef extr 92.1 0.48 1E-05 39.5 5.9 44 62-111 447-490 (792)
74 TIGR01738 bioH putative pimelo 91.9 0.28 6.1E-06 33.2 3.9 37 64-107 4-40 (245)
75 PRK13604 luxD acyl transferase 91.7 1 2.2E-05 33.5 6.9 64 34-107 9-74 (307)
76 COG2936 Predicted acyl esteras 91.6 0.46 1E-05 38.1 5.1 69 32-107 17-90 (563)
77 COG4188 Predicted dienelactone 91.4 0.65 1.4E-05 35.3 5.5 77 34-116 38-117 (365)
78 PRK11126 2-succinyl-6-hydroxy- 91.3 0.24 5.2E-06 34.2 3.1 36 64-107 2-37 (242)
79 PF04083 Abhydro_lipase: Parti 91.2 1.1 2.4E-05 25.3 5.2 41 32-72 10-51 (63)
80 TIGR02240 PHA_depoly_arom poly 91.1 1.1 2.4E-05 31.9 6.4 37 64-107 25-61 (276)
81 PRK05855 short chain dehydroge 91.0 0.76 1.6E-05 36.0 5.9 39 62-107 23-61 (582)
82 PF10142 PhoPQ_related: PhoPQ- 90.7 1.2 2.6E-05 33.9 6.5 52 45-103 50-104 (367)
83 PRK06489 hypothetical protein; 90.6 1.4 3E-05 32.9 6.8 39 64-107 69-115 (360)
84 PRK10349 carboxylesterase BioH 90.4 0.55 1.2E-05 32.9 4.3 36 65-107 14-49 (256)
85 KOG1838 Alpha/beta hydrolase [ 90.3 4.6 0.0001 31.3 9.3 73 33-109 94-166 (409)
86 PRK14875 acetoin dehydrogenase 90.2 0.76 1.7E-05 33.9 5.1 41 62-109 129-169 (371)
87 COG2267 PldB Lysophospholipase 89.3 1.4 3.1E-05 32.3 5.9 50 45-107 22-71 (298)
88 PRK03592 haloalkane dehalogena 89.2 0.71 1.5E-05 33.1 4.1 38 63-107 26-63 (295)
89 COG2382 Fes Enterochelin ester 89.1 0.72 1.6E-05 34.1 4.1 68 32-106 67-139 (299)
90 KOG1552 Predicted alpha/beta h 88.6 2.5 5.4E-05 30.7 6.4 41 62-107 58-98 (258)
91 PRK03204 haloalkane dehalogena 88.4 0.73 1.6E-05 33.3 3.7 39 64-109 34-72 (286)
92 PLN03087 BODYGUARD 1 domain co 88.2 4 8.6E-05 32.3 7.9 41 62-107 199-242 (481)
93 PF11144 DUF2920: Protein of u 87.7 3 6.4E-05 32.2 6.7 44 62-107 32-75 (403)
94 PRK11460 putative hydrolase; P 87.4 1.1 2.3E-05 31.6 4.0 38 62-104 14-52 (232)
95 PLN02679 hydrolase, alpha/beta 87.3 1 2.2E-05 33.8 4.0 37 63-106 87-123 (360)
96 PLN02980 2-oxoglutarate decarb 87.2 3.5 7.5E-05 37.4 7.7 39 62-107 1369-1407(1655)
97 PF00151 Lipase: Lipase; Inte 86.8 0.96 2.1E-05 33.9 3.7 54 62-117 69-124 (331)
98 TIGR01249 pro_imino_pep_1 prol 84.7 4.2 9.2E-05 29.5 6.1 37 64-107 27-63 (306)
99 KOG2382 Predicted alpha/beta h 83.1 2.9 6.2E-05 31.3 4.6 41 62-107 50-90 (315)
100 PLN02578 hydrolase 82.1 2.4 5.3E-05 31.6 4.1 36 65-107 87-122 (354)
101 KOG4178 Soluble epoxide hydrol 80.6 22 0.00048 26.8 8.7 68 32-115 22-89 (322)
102 PF10686 DUF2493: Protein of u 80.4 4 8.6E-05 23.6 3.7 34 62-102 29-62 (71)
103 PRK07581 hypothetical protein; 80.3 2.9 6.4E-05 30.7 3.9 42 63-110 40-84 (339)
104 TIGR01838 PHA_synth_I poly(R)- 79.9 12 0.00025 30.1 7.3 56 43-107 172-230 (532)
105 PF06500 DUF1100: Alpha/beta h 79.5 9.6 0.00021 29.6 6.5 64 32-107 165-228 (411)
106 TIGR03230 lipo_lipase lipoprot 78.1 6.6 0.00014 30.8 5.3 52 62-115 39-91 (442)
107 PF00975 Thioesterase: Thioest 77.6 3.9 8.4E-05 28.0 3.7 37 66-108 2-38 (229)
108 PF05577 Peptidase_S28: Serine 77.5 1.1 2.5E-05 34.3 1.0 46 62-110 27-72 (434)
109 COG1647 Esterase/lipase [Gener 76.5 3.5 7.5E-05 29.5 3.1 37 64-106 15-51 (243)
110 COG2945 Predicted hydrolase of 74.4 15 0.00033 25.8 5.7 45 62-107 26-70 (210)
111 TIGR01607 PST-A Plasmodium sub 74.0 9.4 0.0002 28.3 5.1 21 86-107 64-84 (332)
112 KOG2624 Triglyceride lipase-ch 72.0 25 0.00055 27.3 7.0 65 32-107 46-116 (403)
113 PF02230 Abhydrolase_2: Phosph 71.2 3.8 8.2E-05 28.3 2.3 14 62-75 12-25 (216)
114 PF12048 DUF3530: Protein of u 69.3 39 0.00084 25.1 7.4 58 42-107 70-127 (310)
115 PRK07868 acyl-CoA synthetase; 69.3 17 0.00037 31.3 6.1 58 43-107 47-109 (994)
116 KOG2237 Predicted serine prote 67.8 10 0.00022 31.2 4.2 72 33-111 440-513 (712)
117 KOG3967 Uncharacterized conser 65.8 11 0.00025 27.0 3.7 18 62-79 99-116 (297)
118 PF06342 DUF1057: Alpha/beta h 65.7 54 0.0012 24.4 8.6 66 32-107 4-72 (297)
119 PF01674 Lipase_2: Lipase (cla 62.6 14 0.0003 26.1 3.8 39 67-110 4-45 (219)
120 PF05677 DUF818: Chlamydia CHL 62.0 43 0.00094 25.6 6.4 73 32-109 110-183 (365)
121 PTZ00472 serine carboxypeptida 61.9 15 0.00032 28.9 4.1 24 45-73 63-86 (462)
122 PF14041 Lipoprotein_21: LppP/ 61.7 28 0.0006 20.8 4.5 42 62-107 23-64 (89)
123 COG3571 Predicted hydrolase of 61.4 28 0.0006 24.0 4.8 39 64-106 14-52 (213)
124 PRK11071 esterase YqiA; Provis 60.3 19 0.00041 24.4 4.1 38 65-107 2-42 (190)
125 cd03015 PRX_Typ2cys Peroxiredo 58.9 15 0.00032 24.4 3.3 43 62-105 28-71 (173)
126 TIGR02964 xanthine_xdhC xanthi 58.0 22 0.00047 25.5 4.2 41 66-115 101-143 (246)
127 TIGR02740 TraF-like TraF-like 56.6 25 0.00054 25.6 4.3 51 62-116 165-215 (271)
128 PRK05339 PEP synthetase regula 54.5 14 0.00031 27.0 2.7 32 86-120 157-188 (269)
129 PF03618 Kinase-PPPase: Kinase 52.4 13 0.00028 27.0 2.3 32 86-120 151-182 (255)
130 PF00450 Peptidase_S10: Serine 51.6 27 0.00059 26.2 4.0 13 62-74 38-50 (415)
131 COG0400 Predicted esterase [Ge 50.9 18 0.00039 25.3 2.7 36 62-104 16-51 (207)
132 COG2819 Predicted hydrolase of 50.8 97 0.0021 22.7 7.2 68 32-107 9-77 (264)
133 TIGR00632 vsr DNA mismatch end 48.6 43 0.00092 21.4 3.9 15 62-76 54-68 (117)
134 PF13478 XdhC_C: XdhC Rossmann 47.9 43 0.00093 21.7 4.0 21 86-106 10-30 (136)
135 PRK15000 peroxidase; Provision 46.7 29 0.00063 23.9 3.3 43 63-106 34-77 (200)
136 PF04443 LuxE: Acyl-protein sy 45.4 20 0.00043 27.3 2.4 33 66-98 222-254 (365)
137 cd03010 TlpA_like_DsbE TlpA-li 45.0 22 0.00048 22.0 2.3 41 62-106 24-64 (127)
138 PF07819 PGAP1: PGAP1-like pro 44.5 44 0.00096 23.5 4.0 41 63-108 3-50 (225)
139 cd02952 TRP14_like Human TRX-r 43.9 38 0.00083 21.5 3.2 43 62-107 20-70 (119)
140 PRK09437 bcp thioredoxin-depen 43.7 40 0.00087 21.7 3.5 44 62-106 29-73 (154)
141 TIGR02806 clostrip clostripain 41.2 16 0.00036 28.8 1.4 15 62-76 113-127 (476)
142 PF05990 DUF900: Alpha/beta hy 40.7 21 0.00045 25.3 1.8 40 62-106 16-57 (233)
143 PF10021 DUF2263: Uncharacteri 39.9 10 0.00023 25.0 0.2 11 72-82 90-100 (148)
144 KOG1282 Serine carboxypeptidas 38.6 65 0.0014 25.5 4.3 14 62-75 71-84 (454)
145 COG3150 Predicted esterase [Ge 38.4 28 0.0006 24.0 2.0 43 67-116 2-44 (191)
146 TIGR01392 homoserO_Ac_trn homo 38.1 41 0.00089 24.9 3.1 44 63-107 30-82 (351)
147 PF15517 TBPIP_N: TBP-interact 37.2 54 0.0012 20.0 2.9 15 67-81 73-87 (99)
148 cd03014 PRX_Atyp2cys Peroxired 37.1 68 0.0015 20.2 3.7 42 62-105 25-66 (143)
149 PRK13728 conjugal transfer pro 36.8 48 0.001 22.8 3.0 33 86-118 88-120 (181)
150 cd01520 RHOD_YbbB Member of th 36.6 81 0.0018 19.7 4.0 33 62-103 85-117 (128)
151 TIGR00385 dsbE periplasmic pro 35.9 45 0.00098 22.1 2.8 40 62-106 62-101 (173)
152 PF03690 UPF0160: Uncharacteri 35.9 38 0.00082 25.4 2.6 19 64-82 288-306 (318)
153 KOG0895 Ubiquitin-conjugating 35.7 48 0.001 29.0 3.4 30 43-78 898-927 (1101)
154 cd02421 Peptidase_C39_likeD A 35.5 36 0.00079 20.8 2.2 16 62-77 68-83 (124)
155 KOG2872 Uroporphyrinogen decar 35.4 47 0.001 24.9 2.9 35 62-109 250-284 (359)
156 cd03078 GST_N_Metaxin1_like GS 35.2 88 0.0019 17.7 3.6 48 67-116 2-52 (73)
157 COG0596 MhpC Predicted hydrola 34.9 34 0.00075 22.4 2.1 38 64-106 21-59 (282)
158 PTZ00445 p36-lilke protein; Pr 34.9 47 0.001 23.6 2.8 40 66-106 53-100 (219)
159 PRK10382 alkyl hydroperoxide r 34.6 73 0.0016 21.8 3.7 42 63-105 31-73 (187)
160 COG4286 Uncharacterized conser 34.1 37 0.0008 25.1 2.2 21 63-83 275-295 (306)
161 TIGR03137 AhpC peroxiredoxin. 34.1 65 0.0014 21.8 3.4 44 62-106 30-74 (187)
162 PRK08775 homoserine O-acetyltr 33.8 57 0.0012 24.1 3.3 10 97-106 99-108 (343)
163 COG4702 Uncharacterized conser 33.8 33 0.00071 23.1 1.8 7 70-76 117-123 (168)
164 PF07449 HyaE: Hydrogenase-1 e 33.3 70 0.0015 20.0 3.1 18 62-79 81-98 (107)
165 PF13477 Glyco_trans_4_2: Glyc 33.3 1E+02 0.0022 19.0 4.1 38 63-100 99-136 (139)
166 COG2411 Uncharacterized conser 32.8 35 0.00076 23.4 1.8 20 62-81 35-54 (188)
167 PF07680 DoxA: TQO small subun 32.3 18 0.0004 23.6 0.4 8 69-76 1-8 (133)
168 PRK13703 conjugal pilus assemb 32.0 1.5E+02 0.0033 21.5 5.0 46 65-116 145-192 (248)
169 PRK00175 metX homoserine O-ace 31.7 33 0.00071 25.9 1.8 44 63-107 47-101 (379)
170 PF06181 DUF989: Protein of un 31.5 19 0.00042 26.7 0.5 10 67-76 54-63 (300)
171 PF03415 Peptidase_C11: Clostr 31.2 16 0.00035 28.1 0.0 14 62-75 97-110 (397)
172 PF06441 EHN: Epoxide hydrolas 30.7 97 0.0021 19.4 3.5 25 43-72 76-100 (112)
173 cd03011 TlpA_like_ScsD_MtbDsbE 30.4 85 0.0018 19.0 3.3 40 62-105 19-58 (123)
174 PF07905 PucR: Purine cataboli 30.3 1.4E+02 0.0031 18.6 4.5 37 69-106 39-81 (123)
175 PF01812 5-FTHF_cyc-lig: 5-for 30.2 44 0.00095 22.5 2.0 42 64-106 117-164 (186)
176 KOG4409 Predicted hydrolase/ac 30.1 1.7E+02 0.0037 22.6 5.2 37 62-105 88-124 (365)
177 PLN02200 adenylate kinase fami 29.6 99 0.0022 21.8 3.8 35 62-103 40-74 (234)
178 PRK10964 ADP-heptose:LPS hepto 29.1 1.4E+02 0.0031 21.7 4.7 37 63-102 177-215 (322)
179 cd03013 PRX5_like Peroxiredoxi 29.0 1.5E+02 0.0033 19.3 4.4 42 63-105 29-73 (155)
180 PF03612 EIIBC-GUT_N: Sorbitol 28.9 75 0.0016 21.9 2.9 31 62-102 22-52 (183)
181 PLN02209 serine carboxypeptida 28.9 1.5E+02 0.0033 23.2 5.0 12 62-73 66-77 (437)
182 TIGR02193 heptsyl_trn_I lipopo 28.6 1.4E+02 0.003 21.7 4.6 37 63-102 178-216 (319)
183 COG3727 Vsr DNA G:T-mismatch r 28.5 42 0.00092 22.1 1.6 15 62-76 55-69 (150)
184 COG4050 Uncharacterized protei 28.5 1.7E+02 0.0037 18.9 6.6 83 18-109 48-130 (152)
185 PF05687 DUF822: Plant protein 28.4 58 0.0012 21.7 2.2 27 85-111 47-75 (150)
186 PF09752 DUF2048: Uncharacteri 28.2 1.8E+02 0.0038 22.3 5.0 51 45-104 77-128 (348)
187 PF10860 DUF2661: Protein of u 28.2 1.6E+02 0.0035 18.7 4.1 34 66-100 4-37 (113)
188 cd02417 Peptidase_C39_likeA A 28.2 53 0.0011 20.0 2.0 16 62-77 68-83 (121)
189 COG4814 Uncharacterized protei 28.0 53 0.0011 24.2 2.2 26 66-96 47-72 (288)
190 PLN03016 sinapoylglucose-malat 27.8 1.5E+02 0.0033 23.1 4.9 12 62-73 64-75 (433)
191 PLN02937 Putative isoaspartyl 27.6 63 0.0014 25.3 2.7 30 62-91 8-37 (414)
192 PF03583 LIP: Secretory lipase 27.4 79 0.0017 23.1 3.1 28 87-116 17-44 (290)
193 KOG1454 Predicted hydrolase/ac 27.4 58 0.0013 24.3 2.4 39 62-105 56-94 (326)
194 PF13415 Kelch_3: Galactose ox 27.4 38 0.00083 17.3 1.1 8 68-75 4-11 (49)
195 PRK15412 thiol:disulfide inter 26.8 70 0.0015 21.5 2.6 43 62-109 67-109 (185)
196 PRK13191 putative peroxiredoxi 26.7 1.2E+02 0.0027 21.1 3.8 44 63-107 33-77 (215)
197 COG2342 Predicted extracellula 26.7 94 0.002 23.1 3.2 36 85-121 232-267 (300)
198 COG2939 Carboxypeptidase C (ca 26.4 99 0.0021 24.8 3.6 13 62-74 99-111 (498)
199 COG4843 Uncharacterized protei 26.2 22 0.00048 23.5 -0.0 11 70-80 163-173 (179)
200 PF02342 TerD: TerD domain; I 26.1 43 0.00093 22.5 1.4 31 68-99 155-185 (186)
201 cd03016 PRX_1cys Peroxiredoxin 25.9 1.1E+02 0.0025 20.9 3.5 42 64-106 26-68 (203)
202 cd04514 Taspase1_like Taspase1 25.8 55 0.0012 24.5 2.0 25 67-91 2-26 (303)
203 COG1225 Bcp Peroxiredoxin [Pos 25.7 1.3E+02 0.0028 20.2 3.6 41 63-104 30-71 (157)
204 KOG2948 Predicted metal-bindin 25.4 60 0.0013 24.3 2.1 22 62-83 290-311 (327)
205 cd03018 PRX_AhpE_like Peroxire 25.1 1.1E+02 0.0025 19.1 3.3 41 64-105 29-70 (149)
206 PF10671 TcpQ: Toxin co-regula 24.9 1.2E+02 0.0027 17.6 3.1 37 85-121 12-51 (84)
207 cd03017 PRX_BCP Peroxiredoxin 24.9 1.2E+02 0.0026 18.8 3.3 43 62-105 22-65 (140)
208 PTZ00137 2-Cys peroxiredoxin; 24.5 1.3E+02 0.0029 21.8 3.8 44 63-107 98-142 (261)
209 COG3101 Uncharacterized protei 24.3 68 0.0015 21.4 2.0 20 48-72 31-50 (180)
210 COG5039 Exopolysaccharide bios 24.2 44 0.00096 25.1 1.2 15 66-81 88-102 (339)
211 TIGR01359 UMP_CMP_kin_fam UMP- 24.2 82 0.0018 20.7 2.5 19 86-104 13-31 (183)
212 TIGR02727 MTHFS_bact 5,10-meth 24.0 79 0.0017 21.3 2.4 8 85-92 140-147 (181)
213 cd05892 Ig_Myotilin_C C-termin 23.7 69 0.0015 18.1 1.8 16 62-77 10-25 (75)
214 TIGR02739 TraF type-F conjugat 23.6 2.6E+02 0.0057 20.3 5.1 48 65-118 152-201 (256)
215 PF03283 PAE: Pectinacetyleste 23.4 72 0.0016 24.3 2.3 17 62-78 48-64 (361)
216 PF08373 RAP: RAP domain; Int 23.0 1E+02 0.0023 16.2 2.4 21 86-106 20-40 (58)
217 COG1770 PtrB Protease II [Amin 22.9 4.6E+02 0.01 22.1 7.0 81 18-108 406-488 (682)
218 TIGR02452 conserved hypothetic 22.7 48 0.0011 24.2 1.2 11 72-82 93-103 (266)
219 PF00578 AhpC-TSA: AhpC/TSA fa 22.7 78 0.0017 19.1 2.0 43 62-105 24-67 (124)
220 KOG4060 Uncharacterized conser 22.5 1.2E+02 0.0025 20.5 2.8 42 66-110 53-94 (176)
221 cd02958 UAS UAS family; UAS is 22.4 60 0.0013 19.8 1.5 44 62-106 16-61 (114)
222 COG0693 ThiJ Putative intracel 22.2 1.7E+02 0.0036 19.5 3.8 40 64-104 66-106 (188)
223 COG3384 Aromatic ring-opening 21.6 1E+02 0.0023 22.6 2.7 42 62-105 7-54 (268)
224 PRK04940 hypothetical protein; 21.6 43 0.00094 23.0 0.7 7 66-72 1-7 (180)
225 KOG4153 Fructose 1,6-bisphosph 21.5 74 0.0016 23.6 1.9 13 62-74 255-267 (358)
226 PF13418 Kelch_4: Galactose ox 21.2 53 0.0012 16.6 0.9 10 67-76 14-23 (49)
227 PTZ00253 tryparedoxin peroxida 21.2 1.8E+02 0.0038 19.8 3.7 43 63-106 36-79 (199)
228 PF06028 DUF915: Alpha/beta hy 21.1 1.1E+02 0.0025 22.0 2.8 27 62-93 9-35 (255)
229 PRK13599 putative peroxiredoxi 21.0 1.8E+02 0.0038 20.3 3.7 43 63-106 28-71 (215)
230 PF03568 Peptidase_C50: Peptid 20.9 49 0.0011 25.3 0.9 12 64-75 309-321 (383)
231 cd01523 RHOD_Lact_B Member of 20.6 1.9E+02 0.0042 16.8 4.0 13 62-74 60-72 (100)
232 cd04701 Asparaginase_2 L-Aspar 20.6 99 0.0021 22.6 2.4 14 67-80 2-15 (260)
233 KOG0264 Nucleosome remodeling 20.5 54 0.0012 25.6 1.1 13 62-74 360-372 (422)
234 KOG2853 Possible oxidoreductas 20.4 1.8E+02 0.0039 22.7 3.8 32 68-104 89-120 (509)
235 PF13854 Kelch_5: Kelch motif 20.3 64 0.0014 16.0 1.1 8 68-75 17-24 (42)
236 TIGR01839 PHA_synth_II poly(R) 20.2 4.6E+02 0.01 21.5 6.2 56 43-107 199-257 (560)
237 cd02970 PRX_like2 Peroxiredoxi 20.1 1.3E+02 0.0028 18.7 2.8 44 62-106 22-66 (149)
238 cd01518 RHOD_YceA Member of th 20.1 1.6E+02 0.0035 17.2 3.1 13 62-74 60-72 (101)
No 1
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.97 E-value=1.1e-30 Score=192.22 Aligned_cols=117 Identities=38% Similarity=0.671 Sum_probs=107.5
Q ss_pred CeEEccCCcEEecCCCCCCCCCCCCCCCCCceEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCC
Q 042985 1 MFIVNADGTITRDYSNYPSTAATPDPNDHTIAVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSA 80 (122)
Q Consensus 1 ~~~~~~~g~~~r~~~~~~~~~~~~~p~~~~~v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~ 80 (122)
.++++++|+++|.....+.+++.++|.++ +..+++.+....++.++||.|...... .+.|+|||||||||+.|+.
T Consensus 32 ~i~i~~~~~~~r~~~~~~~~p~~~~p~~~--v~~~dv~~~~~~~l~vRly~P~~~~~~---~~~p~lvyfHGGGf~~~S~ 106 (336)
T KOG1515|consen 32 NIRIFKDGSFERFFGRFDKVPPSSDPVNG--VTSKDVTIDPFTNLPVRLYRPTSSSSE---TKLPVLVYFHGGGFCLGSA 106 (336)
T ss_pred hceeecCCceeeeecccccCCCCCCcccC--ceeeeeEecCCCCeEEEEEcCCCCCcc---cCceEEEEEeCCccEeCCC
Confidence 37899999999988335899999999977 999999999999999999999987654 6899999999999999998
Q ss_pred CchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhhhC
Q 042985 81 ATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALE 122 (122)
Q Consensus 81 ~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~~~ 122 (122)
....|+.+|.++|.+++++||+||||||||++||++++||++
T Consensus 107 ~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~ 148 (336)
T KOG1515|consen 107 NSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWA 148 (336)
T ss_pred CCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHH
Confidence 888899999999999999999999999999999999999974
No 2
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.81 E-value=9.9e-20 Score=133.10 Aligned_cols=76 Identities=42% Similarity=0.660 Sum_probs=66.0
Q ss_pred CCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhh
Q 042985 41 QSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDA 120 (122)
Q Consensus 41 ~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~ 120 (122)
....+.+++|.|..... .+.|+|||+|||||+.|+... ++..++.++...|++|+++||||+||++||++++||
T Consensus 60 ~~~~~~~~~y~p~~~~~----~~~p~vly~HGGg~~~g~~~~--~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d~ 133 (312)
T COG0657 60 SGDGVPVRVYRPDRKAA----ATAPVVLYLHGGGWVLGSLRT--HDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDA 133 (312)
T ss_pred CCCceeEEEECCCCCCC----CCCcEEEEEeCCeeeecChhh--hHHHHHHHHHHcCCEEEecCCCCCCCCCCCchHHHH
Confidence 33458899999922211 679999999999999999998 678999999999999999999999999999999998
Q ss_pred hC
Q 042985 121 LE 122 (122)
Q Consensus 121 ~~ 122 (122)
++
T Consensus 134 ~~ 135 (312)
T COG0657 134 YA 135 (312)
T ss_pred HH
Confidence 64
No 3
>PRK10162 acetyl esterase; Provisional
Probab=99.80 E-value=2.7e-19 Score=131.53 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=70.9
Q ss_pred eEEeeEEecCCCC-EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 32 AVSKDVPVNQSNK-TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 32 v~~~~v~~~~~~~-~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
+..+++.+...++ +.+++|.|.. ...|+|||+|||||+.|+... +..+++.|+.+.|+.|+++||||+||
T Consensus 55 ~~~~~~~i~~~~g~i~~~~y~P~~-------~~~p~vv~~HGGg~~~g~~~~--~~~~~~~la~~~g~~Vv~vdYrlape 125 (318)
T PRK10162 55 MATRAYMVPTPYGQVETRLYYPQP-------DSQATLFYLHGGGFILGNLDT--HDRIMRLLASYSGCTVIGIDYTLSPE 125 (318)
T ss_pred ceEEEEEEecCCCceEEEEECCCC-------CCCCEEEEEeCCcccCCCchh--hhHHHHHHHHHcCCEEEEecCCCCCC
Confidence 4467777765544 8999999963 446999999999999999887 67889999998899999999999999
Q ss_pred CCCCchhhhhhC
Q 042985 111 HRLPAAYYDALE 122 (122)
Q Consensus 111 ~~~P~~~~D~~~ 122 (122)
++||++++||++
T Consensus 126 ~~~p~~~~D~~~ 137 (318)
T PRK10162 126 ARFPQAIEEIVA 137 (318)
T ss_pred CCCCCcHHHHHH
Confidence 999999999863
No 4
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.67 E-value=2.5e-17 Score=113.76 Aligned_cols=54 Identities=41% Similarity=0.652 Sum_probs=45.2
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhhhC
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALE 122 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~~~ 122 (122)
|||||||||+.|+... +..+++.++.+.|++|++++|||+||++||++++|+.+
T Consensus 1 v~~~HGGg~~~g~~~~--~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~ 54 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES--HWPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKA 54 (211)
T ss_dssp EEEE--STTTSCGTTT--HHHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHH
T ss_pred CEEECCcccccCChHH--HHHHHHHHHhhccEEEEEeecccccccccccccccccc
Confidence 7999999999999988 68889999987799999999999999999999999863
No 5
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.61 E-value=2.1e-15 Score=114.80 Aligned_cols=65 Identities=37% Similarity=0.667 Sum_probs=55.8
Q ss_pred ecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 39 VNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 39 ~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
..+++|+.|+||.|+.. . +++|||||||||||.+|+.....|+. ..|+++-+++||++||||.+.
T Consensus 74 ~~sEDCL~LNIwaP~~~-a----~~~PVmV~IHGG~y~~Gs~s~~~ydg--s~La~~g~vVvVSvNYRLG~l 138 (491)
T COG2272 74 TGSEDCLYLNIWAPEVP-A----EKLPVMVYIHGGGYIMGSGSEPLYDG--SALAARGDVVVVSVNYRLGAL 138 (491)
T ss_pred CccccceeEEeeccCCC-C----CCCcEEEEEeccccccCCCcccccCh--HHHHhcCCEEEEEeCcccccc
Confidence 46889999999999922 2 78999999999999999998865555 789998669999999999875
No 6
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.46 E-value=2.4e-14 Score=110.52 Aligned_cols=64 Identities=28% Similarity=0.627 Sum_probs=42.0
Q ss_pred CCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 41 QSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 41 ~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
+++|+.|+||+|.....+ .++||+||||||||..|+.....+. ...++.+.+++||+++|||++
T Consensus 105 sEDCL~LnI~~P~~~~~~---~~lPV~v~ihGG~f~~G~~~~~~~~--~~~~~~~~~vivVt~nYRlg~ 168 (535)
T PF00135_consen 105 SEDCLYLNIYTPSNASSN---SKLPVMVWIHGGGFMFGSGSFPPYD--GASLAASKDVIVVTINYRLGA 168 (535)
T ss_dssp ES---EEEEEEETSSSST---TSEEEEEEE--STTTSSCTTSGGGH--THHHHHHHTSEEEEE----HH
T ss_pred CchHHHHhhhhccccccc---cccceEEEeecccccCCCccccccc--ccccccCCCEEEEEecccccc
Confidence 779999999999987643 4799999999999999998432222 234445559999999999964
No 7
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.44 E-value=2.4e-13 Score=104.84 Aligned_cols=65 Identities=22% Similarity=0.493 Sum_probs=51.7
Q ss_pred cCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCC-cEEEEEcCCCCCCC
Q 042985 40 NQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVP-AVIVSVDYRLAPEH 111 (122)
Q Consensus 40 ~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g-~~vv~v~YRlaPe~ 111 (122)
.+++|+.++||.|...... +++|||||||||||..|+.... ....++.+.+ ++||+++|||++..
T Consensus 74 ~sEdcl~l~i~~p~~~~~~---~~~pv~v~ihGG~~~~g~~~~~----~~~~~~~~~~~~~vv~~~yRlg~~g 139 (493)
T cd00312 74 GSEDCLYLNVYTPKNTKPG---NSLPVMVWIHGGGFMFGSGSLY----PGDGLAREGDNVIVVSINYRLGVLG 139 (493)
T ss_pred CCCcCCeEEEEeCCCCCCC---CCCCEEEEEcCCccccCCCCCC----ChHHHHhcCCCEEEEEecccccccc
Confidence 4789999999999864322 7889999999999999988762 2345666555 99999999998843
No 8
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=99.42 E-value=2.6e-13 Score=105.13 Aligned_cols=58 Identities=33% Similarity=0.478 Sum_probs=53.6
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhhh
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAL 121 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~~ 121 (122)
..+-+|+++|||||+..+..+ |..+++.++..+|+.+++|||.|+||++||.++|+|+
T Consensus 394 ~S~sli~HcHGGGfVAqsSkS--HE~YLr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~ 451 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKS--HEPYLRSWAQALGCPIISVDYSLAPEAPFPRALEEVF 451 (880)
T ss_pred CCceEEEEecCCceeeecccc--ccHHHHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHH
Confidence 345689999999999988888 8999999999999999999999999999999999985
No 9
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.20 E-value=2.4e-11 Score=84.08 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred ceEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 31 IAVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 31 ~v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
+...+++.|+.+....++||.|. ...++.||||||.|..|+... ... ...-|.+.|+.|++++|-|+|+
T Consensus 42 i~r~e~l~Yg~~g~q~VDIwg~~--------~~~klfIfIHGGYW~~g~rk~--cls-iv~~a~~~gY~vasvgY~l~~q 110 (270)
T KOG4627|consen 42 IIRVEHLRYGEGGRQLVDIWGST--------NQAKLFIFIHGGYWQEGDRKM--CLS-IVGPAVRRGYRVASVGYNLCPQ 110 (270)
T ss_pred ccchhccccCCCCceEEEEecCC--------CCccEEEEEecchhhcCchhc--ccc-hhhhhhhcCeEEEEeccCcCcc
Confidence 47789999998889999999885 556899999999999998876 333 3445556699999999999999
Q ss_pred C-CCCchhhhh
Q 042985 111 H-RLPAAYYDA 120 (122)
Q Consensus 111 ~-~~P~~~~D~ 120 (122)
. ..-..+.|+
T Consensus 111 ~htL~qt~~~~ 121 (270)
T KOG4627|consen 111 VHTLEQTMTQF 121 (270)
T ss_pred cccHHHHHHHH
Confidence 7 444444443
No 10
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=99.11 E-value=1.1e-10 Score=91.24 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=51.2
Q ss_pred ecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 042985 39 VNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEH 111 (122)
Q Consensus 39 ~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~ 111 (122)
..+++|+.++||.|.....+ + .||+||||||||..|+..... ......++...+++||+++|||++=.
T Consensus 91 ~~sEDCLylNV~tp~~~~~~---~-~pV~V~iHGG~~~~gs~~~~~-~~~~~~~~~~~~VVvVt~~YRLG~lG 158 (545)
T KOG1516|consen 91 FGSEDCLYLNVYTPQGCSES---K-LPVMVYIHGGGFQFGSASSFE-IISPAYVLLLKDVVVVTINYRLGPLG 158 (545)
T ss_pred CCcCCCceEEEeccCCCccC---C-CCEEEEEeCCceeeccccchh-hcCchhccccCCEEEEEecccceece
Confidence 45789999999999876421 2 899999999999999975410 12234455555899999999998643
No 11
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=99.03 E-value=2e-10 Score=87.79 Aligned_cols=62 Identities=19% Similarity=0.428 Sum_probs=52.7
Q ss_pred CCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 41 QSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 41 ~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
+++|+.++||.|.. .+ .+.-|+|||.||||..|++..+.|+. +.|+...+++||+++||++|
T Consensus 117 SEDCLYlNVW~P~~-~p----~n~tVlVWiyGGGF~sGt~SLdvYdG--k~la~~envIvVs~NYRvG~ 178 (601)
T KOG4389|consen 117 SEDCLYLNVWAPAA-DP----YNLTVLVWIYGGGFYSGTPSLDVYDG--KFLAAVENVIVVSMNYRVGA 178 (601)
T ss_pred ChhceEEEEeccCC-CC----CCceEEEEEEcCccccCCcceeeecc--ceeeeeccEEEEEeeeeecc
Confidence 67899999999963 22 45559999999999999999876765 78888889999999999987
No 12
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.98 E-value=1.7e-09 Score=80.96 Aligned_cols=72 Identities=19% Similarity=0.384 Sum_probs=51.1
Q ss_pred CEEEEEEe-eCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhc-CCcEEEEEcCCCCC----CCCCCchh
Q 042985 44 KTWVRIFL-PRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAAR-VPAVIVSVDYRLAP----EHRLPAAY 117 (122)
Q Consensus 44 ~~~~~iy~-P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~-~g~~vv~v~YRlaP----e~~~P~~~ 117 (122)
.....++. |....+ +..|||||+|||||..+..... -.++..+-.. -...++.+||.|++ .+.||+|+
T Consensus 105 ~~s~Wlvk~P~~~~p----k~DpVlIYlHGGGY~l~~~p~q--i~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yPtQL 178 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKP----KSDPVLIYLHGGGYFLGTTPSQ--IEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYPTQL 178 (374)
T ss_pred cceEEEEeCCcccCC----CCCcEEEEEcCCeeEecCCHHH--HHHHHHHHHHcCCCeEEEEeccccccccCCCcCchHH
Confidence 34456666 665332 5579999999999999877652 2322222221 15689999999999 89999999
Q ss_pred hhhh
Q 042985 118 YDAL 121 (122)
Q Consensus 118 ~D~~ 121 (122)
.|+.
T Consensus 179 ~qlv 182 (374)
T PF10340_consen 179 RQLV 182 (374)
T ss_pred HHHH
Confidence 9875
No 13
>PLN00021 chlorophyllase
Probab=98.26 E-value=6.9e-06 Score=60.69 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=52.2
Q ss_pred eEEeeEEecCC--CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEc-CCCC
Q 042985 32 AVSKDVPVNQS--NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVD-YRLA 108 (122)
Q Consensus 32 v~~~~v~~~~~--~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRla 108 (122)
+...++.+.+. ..+.+.||.|... .+.|+|||+||+++. ... |..++..|+.. |++|+.+| |+++
T Consensus 24 ~~~~~~~~~~~~~~~~p~~v~~P~~~------g~~PvVv~lHG~~~~---~~~--y~~l~~~Las~-G~~VvapD~~g~~ 91 (313)
T PLN00021 24 VELITVDESSRPSPPKPLLVATPSEA------GTYPVLLFLHGYLLY---NSF--YSQLLQHIASH-GFIVVAPQLYTLA 91 (313)
T ss_pred eEEEEecCCCcCCCCceEEEEeCCCC------CCCCEEEEECCCCCC---ccc--HHHHHHHHHhC-CCEEEEecCCCcC
Confidence 44555555333 4589999999754 778999999999863 333 67778888876 99999999 4555
Q ss_pred CCCCCCchhhh
Q 042985 109 PEHRLPAAYYD 119 (122)
Q Consensus 109 Pe~~~P~~~~D 119 (122)
++. ....++|
T Consensus 92 ~~~-~~~~i~d 101 (313)
T PLN00021 92 GPD-GTDEIKD 101 (313)
T ss_pred CCC-chhhHHH
Confidence 543 3334444
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.19 E-value=6e-06 Score=66.06 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=52.9
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.+.+.+.+.+.++ +...++.|.+..+. ++.|+|||+|||-+..-. .. +....+.++.+ |++|+.+|||=+
T Consensus 363 ~~~e~~~~~~~dG~~i~~~l~~P~~~~~~---k~yP~i~~~hGGP~~~~~-~~--~~~~~q~~~~~-G~~V~~~n~RGS 434 (620)
T COG1506 363 AEPEPVTYKSNDGETIHGWLYKPPGFDPR---KKYPLIVYIHGGPSAQVG-YS--FNPEIQVLASA-GYAVLAPNYRGS 434 (620)
T ss_pred CCceEEEEEcCCCCEEEEEEecCCCCCCC---CCCCEEEEeCCCCccccc-cc--cchhhHHHhcC-CeEEEEeCCCCC
Confidence 5567778877666 77788999887654 568999999999754333 22 56677788876 999999999943
No 15
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.95 E-value=5.3e-06 Score=57.59 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=36.8
Q ss_pred EEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 48 RIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 48 ~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+|.|++.. ++.|+||++||+++....... ......++.+.|++|+.++|+-
T Consensus 2 ~ly~P~~~~-----~~~P~vv~lHG~~~~~~~~~~---~~~~~~~a~~~g~~Vv~Pd~~g 53 (212)
T TIGR01840 2 YVYVPAGLT-----GPRALVLALHGCGQTASAYVI---DWGWKAAADRYGFVLVAPEQTS 53 (212)
T ss_pred EEEcCCCCC-----CCCCEEEEeCCCCCCHHHHhh---hcChHHHHHhCCeEEEecCCcC
Confidence 578898753 778999999999864322111 0114566777799999999985
No 16
>PRK10115 protease 2; Provisional
Probab=97.65 E-value=0.00077 Score=54.77 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEeeEEecCCCCEEEE--EEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 32 AVSKDVPVNQSNKTWVR--IFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~--iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
...+.+.+.+.++..+. +..++..... ++.|+|||+|||-...-... |......|+.+ |++|+.++||=+-
T Consensus 414 ~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~---~~~P~ll~~hGg~~~~~~p~---f~~~~~~l~~r-G~~v~~~n~RGs~ 486 (686)
T PRK10115 414 YRSEHLWITARDGVEVPVSLVYHRKHFRK---GHNPLLVYGYGSYGASIDAD---FSFSRLSLLDR-GFVYAIVHVRGGG 486 (686)
T ss_pred cEEEEEEEECCCCCEEEEEEEEECCCCCC---CCCCEEEEEECCCCCCCCCC---ccHHHHHHHHC-CcEEEEEEcCCCC
Confidence 57888888888875443 3443332111 56799999999765433333 45555677776 9999999999776
Q ss_pred C
Q 042985 110 E 110 (122)
Q Consensus 110 e 110 (122)
+
T Consensus 487 g 487 (686)
T PRK10115 487 E 487 (686)
T ss_pred c
Confidence 5
No 17
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=97.48 E-value=0.00081 Score=48.51 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=38.2
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..+.||.|+.... ++.|+|+++||++ ++............++.+.|+.||.+|+.
T Consensus 27 ~~~~v~~P~~~~~----~~~P~vvllHG~~---~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 27 MTFGVFLPPQAAA----GPVPVLWYLSGLT---CTHENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred eEEEEEcCCCccC----CCCCEEEEccCCC---CCccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 6788999986432 6689999999987 23332111223457777779999999983
No 18
>PRK10566 esterase; Provisional
Probab=97.47 E-value=0.00055 Score=48.07 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=37.8
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
++....|.|..... ++.|+||++||++. +... +..++..|+.+ |+.|+.+|||-.
T Consensus 11 ~~~~~~~~p~~~~~----~~~p~vv~~HG~~~---~~~~--~~~~~~~l~~~-G~~v~~~d~~g~ 65 (249)
T PRK10566 11 GIEVLHAFPAGQRD----TPLPTVFFYHGFTS---SKLV--YSYFAVALAQA-GFRVIMPDAPMH 65 (249)
T ss_pred CcceEEEcCCCCCC----CCCCEEEEeCCCCc---ccch--HHHHHHHHHhC-CCEEEEecCCcc
Confidence 34444566754321 56799999999753 3333 56677777765 999999999964
No 19
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.20 E-value=0.0016 Score=47.68 Aligned_cols=68 Identities=21% Similarity=0.429 Sum_probs=50.2
Q ss_pred eeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCC
Q 042985 35 KDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRL 113 (122)
Q Consensus 35 ~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~ 113 (122)
+|+.+++.+ +.+++|.-.... +..|++++.||||+- .-+ |..++.++..+..+.++++|-|=--|..+
T Consensus 51 edv~i~~~~-~t~n~Y~t~~~~-----t~gpil~l~HG~G~S---~LS--fA~~a~el~s~~~~r~~a~DlRgHGeTk~ 118 (343)
T KOG2564|consen 51 EDVSIDGSD-LTFNVYLTLPSA-----TEGPILLLLHGGGSS---ALS--FAIFASELKSKIRCRCLALDLRGHGETKV 118 (343)
T ss_pred cccccCCCc-ceEEEEEecCCC-----CCccEEEEeecCccc---chh--HHHHHHHHHhhcceeEEEeeccccCcccc
Confidence 455554433 478888755432 788999999999973 444 67889999999999999999996555544
No 20
>PLN02442 S-formylglutathione hydrolase
Probab=97.17 E-value=0.0029 Score=45.96 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..+.+.||.|..... ++.|+|+++||++. +........-+..++...|++||.+|..
T Consensus 30 ~~~~~~vy~P~~~~~----~~~Pvv~~lHG~~~---~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 30 CSMTFSVYFPPASDS----GKVPVLYWLSGLTC---TDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred CceEEEEEcCCcccC----CCCCEEEEecCCCc---ChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 358899999984322 78899999998663 2322101111234555669999999864
No 21
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.10 E-value=0.005 Score=45.72 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=35.3
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+....|.|... +.+++||++||.|- +... .+..++..|+.. |+.|+.+|||=
T Consensus 74 l~~~~~~p~~~------~~~~~iv~lHG~~~---~~~~-~~~~~~~~l~~~-g~~v~~~D~~G 125 (349)
T PLN02385 74 IFSKSWLPENS------RPKAAVCFCHGYGD---TCTF-FFEGIARKIASS-GYGVFAMDYPG 125 (349)
T ss_pred EEEEEEecCCC------CCCeEEEEECCCCC---ccch-HHHHHHHHHHhC-CCEEEEecCCC
Confidence 44456667533 56689999999763 2222 135566777765 99999999994
No 22
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.04 E-value=0.0034 Score=47.87 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=38.2
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+....|.|... +..++||++||.+ ++... |..++..|+.+ |+.|+.+|||=
T Consensus 122 ~l~~~~~~p~~~------~~~~~Vl~lHG~~---~~~~~--~~~~a~~L~~~-Gy~V~~~D~rG 173 (395)
T PLN02652 122 ALFCRSWAPAAG------EMRGILIIIHGLN---EHSGR--YLHFAKQLTSC-GFGVYAMDWIG 173 (395)
T ss_pred EEEEEEecCCCC------CCceEEEEECCch---HHHHH--HHHHHHHHHHC-CCEEEEeCCCC
Confidence 467778877543 5678999999975 22222 56677788765 99999999994
No 23
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.03 E-value=0.00097 Score=50.63 Aligned_cols=40 Identities=25% Similarity=0.597 Sum_probs=27.8
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.|||||=||-| |+... |..+|..||.. |++|+++++|=
T Consensus 98 ~~~PvvIFSHGlg---g~R~~--yS~~~~eLAS~-GyVV~aieHrD 137 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---GSRTS--YSAICGELASH-GYVVAAIEHRD 137 (379)
T ss_dssp S-EEEEEEE--TT-----TTT--THHHHHHHHHT-T-EEEEE---S
T ss_pred CCCCEEEEeCCCC---cchhh--HHHHHHHHHhC-CeEEEEeccCC
Confidence 5789999999987 56666 88999999998 99999999984
No 24
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.01 E-value=0.0041 Score=45.65 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=41.4
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..++..+...++ +....|.|.... ...++||++||.+ ++... .+..++..|+.+ |+.|+.+|+|=
T Consensus 30 ~~~~~~~~~~~dg~~l~~~~~~~~~~~-----~~~~~VvllHG~~---~~~~~-~~~~~~~~L~~~-Gy~V~~~D~rG 97 (330)
T PLN02298 30 IKGSKSFFTSPRGLSLFTRSWLPSSSS-----PPRALIFMVHGYG---NDISW-TFQSTAIFLAQM-GFACFALDLEG 97 (330)
T ss_pred CccccceEEcCCCCEEEEEEEecCCCC-----CCceEEEEEcCCC---CCcce-ehhHHHHHHHhC-CCEEEEecCCC
Confidence 4444545544454 555667675432 4568999999986 12221 134555667765 99999999993
No 25
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=96.97 E-value=0.0044 Score=44.93 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=29.8
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
++.|+||++||-|....... ..+..++..|+.. |+.|+.+|||=.
T Consensus 23 ~~~~~VlllHG~g~~~~~~~-~~~~~la~~La~~-Gy~Vl~~Dl~G~ 67 (266)
T TIGR03101 23 GPRGVVIYLPPFAEEMNKSR-RMVALQARAFAAG-GFGVLQIDLYGC 67 (266)
T ss_pred CCceEEEEECCCcccccchh-HHHHHHHHHHHHC-CCEEEEECCCCC
Confidence 55799999999553221111 1134556677654 999999999964
No 26
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=96.92 E-value=0.00061 Score=48.10 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=36.4
Q ss_pred EEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 46 WVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 46 ~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
..++|.|+.... .+.|+||.+||.+-. ........-...+|.+.|++|+.++=
T Consensus 2 ~Y~lYvP~~~~~----~~~PLVv~LHG~~~~---a~~~~~~s~~~~lAd~~GfivvyP~~ 54 (220)
T PF10503_consen 2 SYRLYVPPGAPR----GPVPLVVVLHGCGQS---AEDFAAGSGWNALADREGFIVVYPEQ 54 (220)
T ss_pred cEEEecCCCCCC----CCCCEEEEeCCCCCC---HHHHHhhcCHHHHhhcCCeEEEcccc
Confidence 457899986542 578999999999753 22210112245789999999998763
No 27
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.90 E-value=0.0053 Score=45.62 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=41.2
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+...++.+.+.++ ++..++.|+... ++.|+||.+||.|.. ... +.. ...++.. |+++++++-|=
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~-----~~~Pavv~~hGyg~~---~~~--~~~-~~~~a~~-G~~vl~~d~rG 119 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK-----GKLPAVVQFHGYGGR---SGD--PFD-LLPWAAA-GYAVLAMDVRG 119 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS-----SSEEEEEEE--TT-----GGG--HHH-HHHHHHT-T-EEEEE--TT
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC-----CCcCEEEEecCCCCC---CCC--ccc-ccccccC-CeEEEEecCCC
Confidence 8889999987665 677899998543 899999999998854 211 122 2346654 99999999883
No 28
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=96.79 E-value=0.0036 Score=37.12 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=38.3
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..+.|.|+. +.+.+|+++||-+-- ... |..++..|+.. |+.|+..|+|=
T Consensus 4 L~~~~w~p~~-------~~k~~v~i~HG~~eh---~~r--y~~~a~~L~~~-G~~V~~~D~rG 53 (79)
T PF12146_consen 4 LFYRRWKPEN-------PPKAVVVIVHGFGEH---SGR--YAHLAEFLAEQ-GYAVFAYDHRG 53 (79)
T ss_pred EEEEEecCCC-------CCCEEEEEeCCcHHH---HHH--HHHHHHHHHhC-CCEEEEECCCc
Confidence 5677888874 347899999998632 222 67888888886 99999999994
No 29
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=96.75 E-value=0.0039 Score=45.01 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=40.7
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEc-CCCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVD-YRLA 108 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRla 108 (122)
..+.||.|+.. ...||+||+||=+ + ... .|..++..+|+- |++||.++ |.+.
T Consensus 4 ~~l~v~~P~~~------g~yPVv~f~~G~~-~---~~s-~Ys~ll~hvASh-GyIVV~~d~~~~~ 56 (259)
T PF12740_consen 4 KPLLVYYPSSA------GTYPVVLFLHGFL-L---INS-WYSQLLEHVASH-GYIVVAPDLYSIG 56 (259)
T ss_pred CCeEEEecCCC------CCcCEEEEeCCcC-C---CHH-HHHHHHHHHHhC-ceEEEEecccccC
Confidence 46789999886 7899999999976 2 222 278899999985 99999999 4433
No 30
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=96.74 E-value=0.0015 Score=41.73 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=32.0
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEH 111 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~ 111 (122)
+||++||++. +... +..+...++++ |+.++.++||..-+.
T Consensus 1 ~vv~~HG~~~---~~~~--~~~~~~~l~~~-G~~v~~~~~~~~~~~ 40 (145)
T PF12695_consen 1 VVVLLHGWGG---SRRD--YQPLAEALAEQ-GYAVVAFDYPGHGDS 40 (145)
T ss_dssp EEEEECTTTT---TTHH--HHHHHHHHHHT-TEEEEEESCTTSTTS
T ss_pred CEEEECCCCC---CHHH--HHHHHHHHHHC-CCEEEEEecCCCCcc
Confidence 5899999975 3333 67888888887 999999999986554
No 31
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=96.70 E-value=0.014 Score=44.78 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=40.3
Q ss_pred EeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 34 SKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 34 ~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.+.+.+...++ +...++.|... ++.|+||.+||.+ +.... .+..++..++.+ |+.|+.+|+|=.
T Consensus 168 ~e~v~i~~~~g~~l~g~l~~P~~~------~~~P~Vli~gG~~---~~~~~-~~~~~~~~La~~-Gy~vl~~D~pG~ 233 (414)
T PRK05077 168 LKELEFPIPGGGPITGFLHLPKGD------GPFPTVLVCGGLD---SLQTD-YYRLFRDYLAPR-GIAMLTIDMPSV 233 (414)
T ss_pred eEEEEEEcCCCcEEEEEEEECCCC------CCccEEEEeCCcc---cchhh-hHHHHHHHHHhC-CCEEEEECCCCC
Confidence 45666654444 67777888732 6778877654432 12222 245556677765 999999999953
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=96.67 E-value=0.0076 Score=42.90 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=38.1
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+...+|.|.. .+.++|+++||.+. +... |..++..|+.+ |+.|+++|+|=
T Consensus 12 ~l~~~~~~~~~-------~~~~~v~llHG~~~---~~~~--~~~~~~~l~~~-g~~via~D~~G 62 (276)
T PHA02857 12 YIYCKYWKPIT-------YPKALVFISHGAGE---HSGR--YEELAENISSL-GILVFSHDHIG 62 (276)
T ss_pred EEEEEeccCCC-------CCCEEEEEeCCCcc---ccch--HHHHHHHHHhC-CCEEEEccCCC
Confidence 37778888852 45589999999763 3333 67777888775 99999999994
No 33
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.66 E-value=0.0094 Score=42.96 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred EEecCCC-CEEEEEEeeCCCCCCCCCCCccEEEEEeCCe-eEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 37 VPVNQSN-KTWVRIFLPRQALDSSTKTKLPLIVYVHGGA-LILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 37 v~~~~~~-~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg-~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+.+...+ .+.-.++.|... +.+.+|+||||. +..|+... +..+++.|+.+ |+.++.+|+|=
T Consensus 5 ~~~~~~~~~l~g~~~~p~~~-------~~~~vv~i~gg~~~~~g~~~~--~~~la~~l~~~-G~~v~~~Dl~G 67 (274)
T TIGR03100 5 LTFSCEGETLVGVLHIPGAS-------HTTGVLIVVGGPQYRVGSHRQ--FVLLARRLAEA-GFPVLRFDYRG 67 (274)
T ss_pred EEEEcCCcEEEEEEEcCCCC-------CCCeEEEEeCCccccCCchhH--HHHHHHHHHHC-CCEEEEeCCCC
Confidence 4443332 255567777642 234666666654 54444433 45567777775 99999999984
No 34
>PRK10985 putative hydrolase; Provisional
Probab=96.46 E-value=0.019 Score=42.33 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=29.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.+.|+||++||.+ |+........++..++. .|+.|+.+|||=.
T Consensus 56 ~~~p~vll~HG~~---g~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~ 98 (324)
T PRK10985 56 RHKPRLVLFHGLE---GSFNSPYAHGLLEAAQK-RGWLGVVMHFRGC 98 (324)
T ss_pred CCCCEEEEeCCCC---CCCcCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 5679999999874 23222212445666665 4999999999953
No 35
>PRK00870 haloalkane dehalogenase; Provisional
Probab=96.41 E-value=0.023 Score=41.10 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=39.9
Q ss_pred eeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 35 KDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 35 ~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+.+..++.++.+.+++.-.... ...|.||++||.+ ++... |..++..|+.+ |+.|+++|.|=
T Consensus 22 ~~~~~~~~~~~~~~i~y~~~G~-----~~~~~lvliHG~~---~~~~~--w~~~~~~L~~~-gy~vi~~Dl~G 83 (302)
T PRK00870 22 HYVDVDDGDGGPLRMHYVDEGP-----ADGPPVLLLHGEP---SWSYL--YRKMIPILAAA-GHRVIAPDLIG 83 (302)
T ss_pred eeEeecCCCCceEEEEEEecCC-----CCCCEEEEECCCC---Cchhh--HHHHHHHHHhC-CCEEEEECCCC
Confidence 4555655455555555443221 3457899999964 22333 66777777655 89999999984
No 36
>PLN02511 hydrolase
Probab=96.24 E-value=0.038 Score=41.95 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=34.2
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
.+.++.+.+...... ...|+||++||.+ |+.....+..++..+.. .|+.|+.+|+|=.-
T Consensus 83 ~~~ldw~~~~~~~~~---~~~p~vvllHG~~---g~s~~~y~~~~~~~~~~-~g~~vv~~d~rG~G 141 (388)
T PLN02511 83 AVALDWVSGDDRALP---ADAPVLILLPGLT---GGSDDSYVRHMLLRARS-KGWRVVVFNSRGCA 141 (388)
T ss_pred EEEEEecCcccccCC---CCCCEEEEECCCC---CCCCCHHHHHHHHHHHH-CCCEEEEEecCCCC
Confidence 355565543321111 4578999999974 22222112334455544 49999999999643
No 37
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=96.06 E-value=0.065 Score=38.18 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=50.2
Q ss_pred ceEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 31 IAVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 31 ~v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
....+.++....+.++++-|.=.+. ..+|.++|+|+-+=.+|..- ..++-+-...++.|+.++||=
T Consensus 51 n~pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAGNmGhr~-----~i~~~fy~~l~mnv~ivsYRG 116 (300)
T KOG4391|consen 51 NMPYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAGNMGHRL-----PIARVFYVNLKMNVLIVSYRG 116 (300)
T ss_pred CCCceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCCcccchh-----hHHHHHHHHcCceEEEEEeec
Confidence 3777888888888899998876643 78899999999875554332 344555566799999999995
No 38
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=95.97 E-value=0.012 Score=43.84 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=34.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.|++||=||=| |++.. |..+|..||.. |++|.+++.|=
T Consensus 116 ~k~PvvvFSHGLg---gsRt~--YSa~c~~LASh-G~VVaavEHRD 155 (399)
T KOG3847|consen 116 DKYPVVVFSHGLG---GSRTL--YSAYCTSLASH-GFVVAAVEHRD 155 (399)
T ss_pred CCccEEEEecccc---cchhh--HHHHhhhHhhC-ceEEEEeeccc
Confidence 7899999999955 45665 88999999997 99999999884
No 39
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.84 E-value=0.014 Score=42.95 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=39.5
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEE-cCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSV-DYRL 107 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v-~YRl 107 (122)
.....+|.|.... ++.|+||++||++ ++.....+..-..++|.+.|+.|+.+ .|.-
T Consensus 46 ~r~y~l~vP~g~~-----~~apLvv~LHG~~---~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~ 102 (312)
T COG3509 46 KRSYRLYVPPGLP-----SGAPLVVVLHGSG---GSGAGQLHGTGWDALADREGFLVAYPDGYDR 102 (312)
T ss_pred ccceEEEcCCCCC-----CCCCEEEEEecCC---CChHHhhcccchhhhhcccCcEEECcCcccc
Confidence 3677899998876 5559999999997 33333112223478899999999988 4543
No 40
>COG4099 Predicted peptidase [General function prediction only]
Probab=95.79 E-value=0.014 Score=43.21 Aligned_cols=30 Identities=27% Similarity=0.630 Sum_probs=24.8
Q ss_pred CCEEEEEEeeCCCCCCCCCCCc-cEEEEEeCCee
Q 042985 43 NKTWVRIFLPRQALDSSTKTKL-PLIVYVHGGAL 75 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~-pvvv~iHGGg~ 75 (122)
..+.-++|.|+..++. ++. |.++|+||+|=
T Consensus 172 neLkYrly~Pkdy~pd---kky~PLvlfLHgagq 202 (387)
T COG4099 172 NELKYRLYTPKDYAPD---KKYYPLVLFLHGAGQ 202 (387)
T ss_pred ceeeEEEecccccCCC---CccccEEEEEecCCC
Confidence 4588899999887665 666 99999999984
No 41
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=95.70 E-value=0.025 Score=44.85 Aligned_cols=55 Identities=13% Similarity=-0.053 Sum_probs=36.8
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..++|.|+.. ++.|+||++||-|...+..... .......++.+ |+.|+.+|+|=
T Consensus 9 L~~~~~~P~~~------~~~P~Il~~~gyg~~~~~~~~~-~~~~~~~l~~~-Gy~vv~~D~RG 63 (550)
T TIGR00976 9 LAIDVYRPAGG------GPVPVILSRTPYGKDAGLRWGL-DKTEPAWFVAQ-GYAVVIQDTRG 63 (550)
T ss_pred EEEEEEecCCC------CCCCEEEEecCCCCchhhcccc-ccccHHHHHhC-CcEEEEEeccc
Confidence 67789999753 6889999999876432210110 12233455555 99999999994
No 42
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=95.61 E-value=0.1 Score=38.54 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=40.2
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+...-|.|.... +++-.|+++||.|= -.+..|..++..|+.. |+.|+.+||+=
T Consensus 39 ~lft~~W~p~~~~-----~pr~lv~~~HG~g~----~~s~~~~~~a~~l~~~-g~~v~a~D~~G 92 (313)
T KOG1455|consen 39 KLFTQSWLPLSGT-----EPRGLVFLCHGYGE----HSSWRYQSTAKRLAKS-GFAVYAIDYEG 92 (313)
T ss_pred EeEEEecccCCCC-----CCceEEEEEcCCcc----cchhhHHHHHHHHHhC-CCeEEEeeccC
Confidence 3677788886543 67789999999873 2222267788888886 99999999984
No 43
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=95.54 E-value=0.11 Score=39.61 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=38.1
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEe----eCCC--------c-hhhHHHHHHHHhcC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALIL----LSAA--------T-KIYHDLCSDIAARV 96 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~----g~~~--------~-~~~~~~~~~la~~~ 96 (122)
.+.+.+.+..... +...++.|++.. .+.|+||.+||=|-.. |... . .....+...||++
T Consensus 86 Y~~EKv~f~~~p~~~vpaylLvPd~~~-----~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~- 159 (390)
T PF12715_consen 86 YTREKVEFNTTPGSRVPAYLLVPDGAK-----GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR- 159 (390)
T ss_dssp EEEEEEEE--STTB-EEEEEEEETT-------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT-
T ss_pred eEEEEEEEEccCCeeEEEEEEecCCCC-----CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC-
Confidence 4455566654443 778889999864 8999999998865321 1110 0 0012357788876
Q ss_pred CcEEEEEcCCC
Q 042985 97 PAVIVSVDYRL 107 (122)
Q Consensus 97 g~~vv~v~YRl 107 (122)
|++|+++|=.-
T Consensus 160 GYVvla~D~~g 170 (390)
T PF12715_consen 160 GYVVLAPDALG 170 (390)
T ss_dssp TSEEEEE--TT
T ss_pred CCEEEEEcccc
Confidence 99999999654
No 44
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=95.15 E-value=0.098 Score=36.43 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
...+.||++|||+. +... +......++.+.|+.|+.+|+|=.
T Consensus 23 ~~~~~vl~~hG~~g---~~~~--~~~~~~~~l~~~g~~vi~~d~~G~ 64 (288)
T TIGR01250 23 GEKIKLLLLHGGPG---MSHE--YLENLRELLKEEGREVIMYDQLGC 64 (288)
T ss_pred CCCCeEEEEcCCCC---ccHH--HHHHHHHHHHhcCCEEEEEcCCCC
Confidence 33578899999752 2222 344455566656899999999853
No 45
>PRK10673 acyl-CoA esterase; Provisional
Probab=95.11 E-value=0.056 Score=37.69 Aligned_cols=40 Identities=30% Similarity=0.236 Sum_probs=29.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
...|.||++||.+ ++... +..++..|+. ++.|+.+|.|--
T Consensus 14 ~~~~~iv~lhG~~---~~~~~--~~~~~~~l~~--~~~vi~~D~~G~ 53 (255)
T PRK10673 14 HNNSPIVLVHGLF---GSLDN--LGVLARDLVN--DHDIIQVDMRNH 53 (255)
T ss_pred CCCCCEEEECCCC---CchhH--HHHHHHHHhh--CCeEEEECCCCC
Confidence 5678999999974 23333 5677777765 689999999853
No 46
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=95.10 E-value=0.05 Score=39.20 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..|.||++||.+. +... |..+...|..+ |+.|+.+++|-
T Consensus 16 ~~~p~vvliHG~~~---~~~~--w~~~~~~L~~~-g~~vi~~dl~g 55 (273)
T PLN02211 16 RQPPHFVLIHGISG---GSWC--WYKIRCLMENS-GYKVTCIDLKS 55 (273)
T ss_pred CCCCeEEEECCCCC---CcCc--HHHHHHHHHhC-CCEEEEecccC
Confidence 55689999999764 3333 56666666654 99999999985
No 47
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.90 E-value=0.064 Score=38.93 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=33.4
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCch
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAA 116 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~ 116 (122)
...|++|+|||-+ ++........+...+..+.++.|+.+||+-.....|+.+
T Consensus 34 ~~~p~vilIHG~~---~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a 85 (275)
T cd00707 34 PSRPTRFIIHGWT---SSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQA 85 (275)
T ss_pred CCCCcEEEEcCCC---CCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHH
Confidence 6678999999933 233222123444456555589999999987655555543
No 48
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=94.83 E-value=0.14 Score=37.44 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=41.1
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEc-CCCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVD-YRLAP 109 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRlaP 109 (122)
...+.|+.|... ...|+|+|+||=.. - ...|..+++.++.- |++||+++ |.+.|
T Consensus 32 PkpLlI~tP~~~------G~yPVilF~HG~~l--~---ns~Ys~lL~HIASH-GfIVVAPQl~~~~~ 86 (307)
T PF07224_consen 32 PKPLLIVTPSEA------GTYPVILFLHGFNL--Y---NSFYSQLLAHIASH-GFIVVAPQLYTLFP 86 (307)
T ss_pred CCCeEEecCCcC------CCccEEEEeechhh--h---hHHHHHHHHHHhhc-CeEEEechhhcccC
Confidence 478899999876 88999999998432 2 23378888899885 99999987 34444
No 49
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=94.79 E-value=0.1 Score=36.95 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.2
Q ss_pred ccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 64 LPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
.|.||++||.+. +... ..+...+..++.+ |+.|+.+|+|=--+
T Consensus 30 ~~~ivllHG~~~---~~~~~~~~~~~~~~l~~~-~~~vi~~D~~G~G~ 73 (282)
T TIGR03343 30 GEAVIMLHGGGP---GAGGWSNYYRNIGPFVDA-GYRVILKDSPGFNK 73 (282)
T ss_pred CCeEEEECCCCC---chhhHHHHHHHHHHHHhC-CCEEEEECCCCCCC
Confidence 367999999753 2221 1122334455554 89999999985433
No 50
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=94.62 E-value=0.14 Score=35.35 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=33.5
Q ss_pred EEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 46 WVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 46 ~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...+..|++. ++.|.||.+|+-. |-. .....++..|+.+ |+.|+.+|+=-
T Consensus 2 ~ay~~~P~~~------~~~~~Vvv~~d~~---G~~--~~~~~~ad~lA~~-Gy~v~~pD~f~ 51 (218)
T PF01738_consen 2 DAYVARPEGG------GPRPAVVVIHDIF---GLN--PNIRDLADRLAEE-GYVVLAPDLFG 51 (218)
T ss_dssp EEEEEEETTS------SSEEEEEEE-BTT---BS---HHHHHHHHHHHHT-T-EEEEE-CCC
T ss_pred eEEEEeCCCC------CCCCEEEEEcCCC---CCc--hHHHHHHHHHHhc-CCCEEeccccc
Confidence 4567788765 5789999999753 222 2256788888886 99999999744
No 51
>PRK10749 lysophospholipase L2; Provisional
Probab=94.59 E-value=0.16 Score=37.48 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=28.2
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
..++||++||-+ ++... |..++..++.+ |+.|+.+|+|=
T Consensus 53 ~~~~vll~HG~~---~~~~~--y~~~~~~l~~~-g~~v~~~D~~G 91 (330)
T PRK10749 53 HDRVVVICPGRI---ESYVK--YAELAYDLFHL-GYDVLIIDHRG 91 (330)
T ss_pred CCcEEEEECCcc---chHHH--HHHHHHHHHHC-CCeEEEEcCCC
Confidence 346899999963 22222 56677777765 99999999993
No 52
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.15 Score=42.20 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=47.9
Q ss_pred eEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 32 AVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
...+++.+ .+-...+.+..|++-... ++.|++|.+|||--- ........-.+...++...|++|+.+|||=++
T Consensus 498 ~~~~~i~~-~~~~~~~~~~lP~~~~~~---~kyPllv~~yGGP~s-q~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~ 570 (755)
T KOG2100|consen 498 VEFGKIEI-DGITANAILILPPNFDPS---KKYPLLVVVYGGPGS-QSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSG 570 (755)
T ss_pred ceeEEEEe-ccEEEEEEEecCCCCCCC---CCCCEEEEecCCCCc-ceeeeeEEecHHHHhhccCCeEEEEEcCCCcC
Confidence 55566666 222356677889877665 899999999999741 01111111233455777789999999999765
No 53
>PLN02872 triacylglycerol lipase
Probab=94.52 E-value=0.1 Score=39.94 Aligned_cols=73 Identities=8% Similarity=-0.053 Sum_probs=40.9
Q ss_pred eEEeeEEecCCCCEEEEEEe-eCCCCCCCCCCCccEEEEEeCCeeEeeCC--CchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNKTWVRIFL-PRQALDSSTKTKLPLIVYVHGGALILLSA--ATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~-P~~~~~~~~~~~~pvvv~iHGGg~~~g~~--~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...++..+..+++..+.+++ |...... ...+.|+|+++||.+.....- ... ...+...|+. .|+.|+.+|.|=
T Consensus 42 y~~e~h~v~T~DGy~L~l~ri~~~~~~~-~~~~~~~Vll~HGl~~ss~~w~~~~~-~~sla~~La~-~GydV~l~n~RG 117 (395)
T PLN02872 42 YSCTEHTIQTKDGYLLALQRVSSRNPRL-GSQRGPPVLLQHGLFMAGDAWFLNSP-EQSLGFILAD-HGFDVWVGNVRG 117 (395)
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCCCC-CCCCCCeEEEeCcccccccceeecCc-ccchHHHHHh-CCCCcccccccc
Confidence 55666767677775555554 3211100 014568999999975321110 000 1234445665 499999999985
No 54
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=94.50 E-value=0.022 Score=40.03 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.2
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeC-CeeE
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHG-GALI 76 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHG-Gg~~ 76 (122)
...+.||.|.+.... ++.|||+++|| ++|.
T Consensus 7 ~~~~~VylP~~y~~~---~~~PvlylldG~~~~~ 37 (251)
T PF00756_consen 7 DRRVWVYLPPGYDPS---KPYPVLYLLDGQSGWF 37 (251)
T ss_dssp EEEEEEEECTTGGTT---TTEEEEEEESHTTHHH
T ss_pred eEEEEEEECCCCCCC---CCCEEEEEccCCcccc
Confidence 368899999984332 89999999999 7775
No 55
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=94.32 E-value=0.081 Score=40.71 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=36.2
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcC---CcEEEEEcC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARV---PAVIVSVDY 105 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~---g~~vv~v~Y 105 (122)
...+.||.|.+... ++.|||+++||+.|..... ....+..+..+. .+++|.++-
T Consensus 193 ~r~v~VY~P~~y~~----~~~PvlyllDG~~w~~~~~----~~~~ld~li~~g~i~P~ivV~id~ 249 (411)
T PRK10439 193 SRRVWIYTTGDAAP----EERPLAILLDGQFWAESMP----VWPALDSLTHRGQLPPAVYLLIDA 249 (411)
T ss_pred ceEEEEEECCCCCC----CCCCEEEEEECHHhhhcCC----HHHHHHHHHHcCCCCceEEEEECC
Confidence 37889999986542 7899999999999963222 234445555442 246777764
No 56
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.27 E-value=0.27 Score=34.92 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=41.9
Q ss_pred eeEEecCCC-CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 35 KDVPVNQSN-KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 35 ~~v~~~~~~-~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+++.+...+ .+...+..|+.. .+.|+||.+|+=. |-... ....+++||.+ |++++.++.
T Consensus 3 ~~v~~~~~~~~~~~~~a~P~~~------~~~P~VIv~hei~---Gl~~~--i~~~a~rlA~~-Gy~v~~Pdl 62 (236)
T COG0412 3 TDVTIPAPDGELPAYLARPAGA------GGFPGVIVLHEIF---GLNPH--IRDVARRLAKA-GYVVLAPDL 62 (236)
T ss_pred cceEeeCCCceEeEEEecCCcC------CCCCEEEEEeccc---CCchH--HHHHHHHHHhC-CcEEEechh
Confidence 345555444 477788888876 3449999999843 22222 57889999997 999998874
No 57
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=94.20 E-value=0.31 Score=34.97 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=27.2
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.|.||++||.+. +... |......|+.+ +.|+.+|.|=
T Consensus 29 ~~~vlllHG~~~---~~~~--w~~~~~~L~~~--~~vi~~DlpG 65 (294)
T PLN02824 29 GPALVLVHGFGG---NADH--WRKNTPVLAKS--HRVYAIDLLG 65 (294)
T ss_pred CCeEEEECCCCC---ChhH--HHHHHHHHHhC--CeEEEEcCCC
Confidence 378999999763 3333 67777778764 5899999984
No 58
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=94.02 E-value=0.18 Score=34.63 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.|+||++||.+- +... |...+..+. + ++.|+.+|+|=
T Consensus 11 ~~~~~iv~lhG~~~---~~~~--~~~~~~~l~-~-~~~vi~~D~~G 49 (257)
T TIGR03611 11 ADAPVVVLSSGLGG---SGSY--WAPQLDVLT-Q-RFHVVTYDHRG 49 (257)
T ss_pred CCCCEEEEEcCCCc---chhH--HHHHHHHHH-h-ccEEEEEcCCC
Confidence 45789999999863 3333 445544444 3 79999999984
No 59
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=93.98 E-value=0.23 Score=37.93 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
+..|.||++||.|.. ... |...+..|+. ++.|+.+|+|--
T Consensus 103 ~~~p~vvllHG~~~~---~~~--~~~~~~~L~~--~~~vi~~D~rG~ 142 (402)
T PLN02894 103 EDAPTLVMVHGYGAS---QGF--FFRNFDALAS--RFRVIAIDQLGW 142 (402)
T ss_pred CCCCEEEEECCCCcc---hhH--HHHHHHHHHh--CCEEEEECCCCC
Confidence 456899999998752 222 4555666664 599999999954
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=93.97 E-value=0.24 Score=36.85 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCCCEEEEEEeeCCCCCCCCCCCccEEEEEeC---CeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 41 QSNKTWVRIFLPRQALDSSTKTKLPLIVYVHG---GALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 41 ~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHG---Gg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
+.+.+.+..|.|..... .+.| |+.+|| .+|+..... ...++..|+.+ |+.|+.+|||-.
T Consensus 44 ~~~~~~l~~~~~~~~~~----~~~p-vl~v~~~~~~~~~~d~~~---~~~~~~~L~~~-G~~V~~~D~~g~ 105 (350)
T TIGR01836 44 REDKVVLYRYTPVKDNT----HKTP-LLIVYALVNRPYMLDLQE---DRSLVRGLLER-GQDVYLIDWGYP 105 (350)
T ss_pred EcCcEEEEEecCCCCcC----CCCc-EEEeccccccceeccCCC---CchHHHHHHHC-CCeEEEEeCCCC
Confidence 34567888888764321 3344 788887 344432221 35677788775 999999999864
No 61
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=93.83 E-value=0.46 Score=35.69 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=40.4
Q ss_pred EeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 34 SKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 34 ~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.+.+..+..+-+.++...+... ++.|.+|.+||= .|+..+.-.+.+.+.+.+ .|+.+|..+.|=+
T Consensus 51 re~v~~pdg~~~~ldw~~~p~~------~~~P~vVl~HGL---~G~s~s~y~r~L~~~~~~-rg~~~Vv~~~Rgc 115 (345)
T COG0429 51 RERLETPDGGFIDLDWSEDPRA------AKKPLVVLFHGL---EGSSNSPYARGLMRALSR-RGWLVVVFHFRGC 115 (345)
T ss_pred eEEEEcCCCCEEEEeeccCccc------cCCceEEEEecc---CCCCcCHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 4455555555466665554222 777999999983 344554422334444444 5999999999964
No 62
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=93.77 E-value=0.13 Score=34.28 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.9
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
||++||.+- +... |..++..|+ + |+.|+.+|+|=.
T Consensus 1 vv~~hG~~~---~~~~--~~~~~~~l~-~-~~~v~~~d~~G~ 35 (228)
T PF12697_consen 1 VVFLHGFGG---SSES--WDPLAEALA-R-GYRVIAFDLPGH 35 (228)
T ss_dssp EEEE-STTT---TGGG--GHHHHHHHH-T-TSEEEEEECTTS
T ss_pred eEEECCCCC---CHHH--HHHHHHHHh-C-CCEEEEEecCCc
Confidence 799999973 3433 677888884 4 999999999953
No 63
>KOG3101 consensus Esterase D [General function prediction only]
Probab=93.71 E-value=0.28 Score=34.92 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=39.4
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
.+..||.|...... ++.|+++|+-|=- +..+...-.......|.+.|.+||.+|-.
T Consensus 28 Mtf~vylPp~a~~~---k~~P~lf~LSGLT---CT~~Nfi~Ksg~qq~As~hgl~vV~PDTS 83 (283)
T KOG3101|consen 28 MTFGVYLPPDAPRG---KRCPVLFYLSGLT---CTHENFIEKSGFQQQASKHGLAVVAPDTS 83 (283)
T ss_pred eEEEEecCCCcccC---CcCceEEEecCCc---ccchhhHhhhhHHHhHhhcCeEEECCCCC
Confidence 78899999876654 7799999987632 23332222445677888899999988743
No 64
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=93.65 E-value=0.11 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.9
Q ss_pred cEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 65 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
|.||++||.+ ++... |..++..|+ + ++.|+.+|+|-.
T Consensus 2 ~~vv~~hG~~---~~~~~--~~~~~~~L~-~-~~~v~~~d~~g~ 38 (251)
T TIGR03695 2 PVLVFLHGFL---GSGAD--WQALIELLG-P-HFRCLAIDLPGH 38 (251)
T ss_pred CEEEEEcCCC---Cchhh--HHHHHHHhc-c-cCeEEEEcCCCC
Confidence 6899999965 23444 677777777 3 899999999853
No 65
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.45 Score=38.88 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=44.0
Q ss_pred CCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCc--hhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 41 QSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAAT--KIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 41 ~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~--~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
+...+..-||+|.+.... ++.|+++|+.||-=+.--.++ ....--...||.. |++||.+|-|=+-
T Consensus 622 tg~~lYgmiyKPhn~~pg---kkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~Lasl-Gy~Vv~IDnRGS~ 688 (867)
T KOG2281|consen 622 TGLTLYGMIYKPHNFQPG---KKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASL-GYVVVFIDNRGSA 688 (867)
T ss_pred CCcEEEEEEEccccCCCC---CCCceEEEEcCCCceEEeeccccceehhhhhhhhhc-ceEEEEEcCCCcc
Confidence 334477889999987765 889999999999654322211 0011223456665 9999999988653
No 66
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=93.54 E-value=0.22 Score=34.92 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
...|+||++||.+ ++... |..++..|++ ++.|+.+|+|=.
T Consensus 26 ~~~~~vv~~hG~~---~~~~~--~~~~~~~l~~--~~~vi~~D~~G~ 65 (278)
T TIGR03056 26 TAGPLLLLLHGTG---ASTHS--WRDLMPPLAR--SFRVVAPDLPGH 65 (278)
T ss_pred CCCCeEEEEcCCC---CCHHH--HHHHHHHHhh--CcEEEeecCCCC
Confidence 3458999999965 23333 5667777765 589999999943
No 67
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=93.25 E-value=0.24 Score=33.57 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
+..|+||++||-|- +... +..++..|. .++.|+.+|+|=-
T Consensus 11 ~~~~~li~~hg~~~---~~~~--~~~~~~~l~--~~~~v~~~d~~G~ 50 (251)
T TIGR02427 11 DGAPVLVFINSLGT---DLRM--WDPVLPALT--PDFRVLRYDKRGH 50 (251)
T ss_pred CCCCeEEEEcCccc---chhh--HHHHHHHhh--cccEEEEecCCCC
Confidence 35689999998653 2332 556666654 3899999999853
No 68
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=93.01 E-value=0.53 Score=35.91 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=28.1
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...|.||++||.+. +... |..++..|+. ++.|+++|++=
T Consensus 125 ~~~~~ivllHG~~~---~~~~--w~~~~~~L~~--~~~Via~DlpG 163 (383)
T PLN03084 125 NNNPPVLLIHGFPS---QAYS--YRKVLPVLSK--NYHAIAFDWLG 163 (383)
T ss_pred CCCCeEEEECCCCC---CHHH--HHHHHHHHhc--CCEEEEECCCC
Confidence 34689999999763 2223 5666666654 79999999994
No 69
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.76 E-value=0.75 Score=33.87 Aligned_cols=63 Identities=24% Similarity=0.160 Sum_probs=44.1
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
++.-|+++.+.++ ++..+..|+..+ .+.|.||.+||=+=..| .. + .+ -.++. .|+.++..+-|
T Consensus 54 ve~ydvTf~g~~g~rI~gwlvlP~~~~-----~~~P~vV~fhGY~g~~g--~~--~-~~-l~wa~-~Gyavf~MdvR 118 (321)
T COG3458 54 VEVYDVTFTGYGGARIKGWLVLPRHEK-----GKLPAVVQFHGYGGRGG--EW--H-DM-LHWAV-AGYAVFVMDVR 118 (321)
T ss_pred eEEEEEEEeccCCceEEEEEEeecccC-----CccceEEEEeeccCCCC--Cc--c-cc-ccccc-cceeEEEEecc
Confidence 8888999987665 777888998775 78999999998432111 11 1 11 23344 39999999888
No 70
>PLN02965 Probable pheophorbidase
Probab=92.43 E-value=0.31 Score=34.36 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=27.9
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
.||++||.+ ++... |...+..|+.. ++.|+.+|+|=--
T Consensus 5 ~vvllHG~~---~~~~~--w~~~~~~L~~~-~~~via~Dl~G~G 42 (255)
T PLN02965 5 HFVFVHGAS---HGAWC--WYKLATLLDAA-GFKSTCVDLTGAG 42 (255)
T ss_pred EEEEECCCC---CCcCc--HHHHHHHHhhC-CceEEEecCCcCC
Confidence 499999987 23433 56777777654 8999999997543
No 71
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=92.13 E-value=0.46 Score=34.24 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=34.2
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.||.|=||+|+...+. ..|+.++..|+.+ |++|++.-|...
T Consensus 18 gvihFiGGaf~ga~P~-itYr~lLe~La~~-Gy~ViAtPy~~t 58 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQ-ITYRYLLERLADR-GYAVIATPYVVT 58 (250)
T ss_pred EEEEEcCcceeccCcH-HHHHHHHHHHHhC-CcEEEEEecCCC
Confidence 7999999999955444 4589999999987 999999988764
No 72
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=92.08 E-value=0.97 Score=32.43 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=32.4
Q ss_pred CEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchh-hHH----HHHHHHhcCCcEEEEEcCCC
Q 042985 44 KTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKI-YHD----LCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 44 ~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~-~~~----~~~~la~~~g~~vv~v~YRl 107 (122)
.|.++||.| ..... ++.|+||..|+=|--........ ... ....++.+ |++||.+|-|=
T Consensus 4 ~L~adv~~P-~~~~~---~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~-GY~vV~~D~RG 67 (272)
T PF02129_consen 4 RLAADVYRP-GADGG---GPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAER-GYAVVVQDVRG 67 (272)
T ss_dssp EEEEEEEEE---TTS---SSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHT-T-EEEEEE-TT
T ss_pred EEEEEEEec-CCCCC---CcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhC-CCEEEEECCcc
Confidence 378899999 22222 89999999998772100001100 000 01125555 99999999985
No 73
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=92.07 E-value=0.48 Score=39.53 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEH 111 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~ 111 (122)
...|+||++||=+- .... |..++..|+.+ |+.|+.+|||.--+.
T Consensus 447 ~g~P~VVllHG~~g---~~~~--~~~lA~~La~~-Gy~VIaiDlpGHG~S 490 (792)
T TIGR03502 447 DGWPVVIYQHGITG---AKEN--ALAFAGTLAAA-GVATIAIDHPLHGAR 490 (792)
T ss_pred CCCcEEEEeCCCCC---CHHH--HHHHHHHHHhC-CcEEEEeCCCCCCcc
Confidence 34689999999542 3333 67777788765 899999999864443
No 74
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=91.93 E-value=0.28 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=25.8
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.|.||++||.| ++... |..+...|+. ++.|+.+|+|=
T Consensus 4 ~~~iv~~HG~~---~~~~~--~~~~~~~l~~--~~~vi~~d~~G 40 (245)
T TIGR01738 4 NVHLVLIHGWG---MNAEV--FRCLDEELSA--HFTLHLVDLPG 40 (245)
T ss_pred CceEEEEcCCC---Cchhh--HHHHHHhhcc--CeEEEEecCCc
Confidence 47899999864 23333 5666666653 69999999983
No 75
>PRK13604 luxD acyl transferase; Provisional
Probab=91.75 E-value=1 Score=33.47 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred EeeEEecCCCCEEEE--EEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 34 SKDVPVNQSNKTWVR--IFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 34 ~~~v~~~~~~~~~~~--iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
..|..+...+++.+. +..|+.... .+.++||+.||=+= .... +..+++.|+.. |+.|+..|+|-
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~----~~~~~vIi~HGf~~---~~~~--~~~~A~~La~~-G~~vLrfD~rg 74 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSP----KKNNTILIASGFAR---RMDH--FAGLAEYLSSN-GFHVIRYDSLH 74 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCC----CCCCEEEEeCCCCC---ChHH--HHHHHHHHHHC-CCEEEEecCCC
Confidence 344555566665554 445543221 67789999998552 2222 67778888876 99999999763
No 76
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=91.56 E-value=0.46 Score=38.07 Aligned_cols=69 Identities=19% Similarity=0.091 Sum_probs=45.2
Q ss_pred eEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHH---HHHhcCCcEEEEEcCC
Q 042985 32 AVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCS---DIAARVPAVIVSVDYR 106 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~---~la~~~g~~vv~v~YR 106 (122)
...+++.+.-+++ +..+||.|++. ++.||++-.+=.-+...+........+.. .++. .|++||.+|-|
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~~------g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa-~GYavV~qDvR 89 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAGA------GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAA-QGYAVVNQDVR 89 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCCC------CCCceeEEeeccccccccccCcchhhcccccceeec-CceEEEEeccc
Confidence 5677788887777 67799999987 89999999994434333211100112222 3444 49999999988
Q ss_pred C
Q 042985 107 L 107 (122)
Q Consensus 107 l 107 (122)
=
T Consensus 90 G 90 (563)
T COG2936 90 G 90 (563)
T ss_pred c
Confidence 4
No 77
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=91.36 E-value=0.65 Score=35.28 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=52.0
Q ss_pred EeeEEecCC---CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 34 SKDVPVNQS---NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 34 ~~~v~~~~~---~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
..++.+... ..+.+++|.|......-...+.|+|++=||-| ++... +......++.. |++|..++..-+-.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~G---s~~~~--f~~~A~~lAs~-Gf~Va~~~hpgs~~ 111 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSG---SYVTG--FAWLAEHLASY-GFVVAAPDHPGSNA 111 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCC---CCccc--hhhhHHHHhhC-ceEEEeccCCCccc
Confidence 666666532 34889999998765210013899999999987 23444 56667777775 99999998876555
Q ss_pred CCCCch
Q 042985 111 HRLPAA 116 (122)
Q Consensus 111 ~~~P~~ 116 (122)
...|+.
T Consensus 112 ~~~~~~ 117 (365)
T COG4188 112 GGAPAA 117 (365)
T ss_pred ccCChh
Confidence 555444
No 78
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=91.35 E-value=0.24 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=25.9
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.|.||++||.+. +... |..+...+ + ++.|+++|+|=
T Consensus 2 ~p~vvllHG~~~---~~~~--w~~~~~~l--~-~~~vi~~D~~G 37 (242)
T PRK11126 2 LPWLVFLHGLLG---SGQD--WQPVGEAL--P-DYPRLYIDLPG 37 (242)
T ss_pred CCEEEEECCCCC---ChHH--HHHHHHHc--C-CCCEEEecCCC
Confidence 368999999864 2333 56666655 3 79999999984
No 79
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=91.17 E-value=1.1 Score=25.29 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=19.0
Q ss_pred eEEeeEEecCCCCEEEEEEeeCCCC-CCCCCCCccEEEEEeC
Q 042985 32 AVSKDVPVNQSNKTWVRIFLPRQAL-DSSTKTKLPLIVYVHG 72 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~P~~~~-~~~~~~~~pvvv~iHG 72 (122)
...++..+.++++--+.+++=.... ..+..+++|+|+..||
T Consensus 10 Y~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HG 51 (63)
T PF04083_consen 10 YPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHG 51 (63)
T ss_dssp ---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--
T ss_pred CCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECC
Confidence 5567777778888666665422221 1111177889999998
No 80
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=91.11 E-value=1.1 Score=31.86 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=25.6
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.||++||-+. +... |..++..|.. ++.|+.+|+|=
T Consensus 25 ~~plvllHG~~~---~~~~--w~~~~~~L~~--~~~vi~~Dl~G 61 (276)
T TIGR02240 25 LTPLLIFNGIGA---NLEL--VFPFIEALDP--DLEVIAFDVPG 61 (276)
T ss_pred CCcEEEEeCCCc---chHH--HHHHHHHhcc--CceEEEECCCC
Confidence 367899999542 3333 5666666654 68999999983
No 81
>PRK05855 short chain dehydrogenase; Validated
Probab=91.02 E-value=0.76 Score=35.99 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...|.||++||.+. +... |..+...| . .++.|+.+|+|=
T Consensus 23 ~~~~~ivllHG~~~---~~~~--w~~~~~~L-~-~~~~Vi~~D~~G 61 (582)
T PRK05855 23 PDRPTVVLVHGYPD---NHEV--WDGVAPLL-A-DRFRVVAYDVRG 61 (582)
T ss_pred CCCCeEEEEcCCCc---hHHH--HHHHHHHh-h-cceEEEEecCCC
Confidence 44689999999972 2332 56666666 3 389999999984
No 82
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=90.73 E-value=1.2 Score=33.95 Aligned_cols=52 Identities=15% Similarity=0.359 Sum_probs=39.7
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCe---eEeeCCCchhhHHHHHHHHhcCCcEEEEE
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGA---LILLSAATKIYHDLCSDIAARVPAVIVSV 103 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg---~~~g~~~~~~~~~~~~~la~~~g~~vv~v 103 (122)
..+.|+.|+... .....+++|-||. +....... ....+..+|..+|.+++.+
T Consensus 50 H~l~I~vP~~~~-----~~~~all~i~gG~~~~~~~~~~~~--~~~~~~~~A~~t~siv~~l 104 (367)
T PF10142_consen 50 HWLTIYVPKNDK-----NPDTALLFITGGSNRNWPGPPPDF--DDELLQMIARATGSIVAIL 104 (367)
T ss_pred EEEEEEECCCCC-----CCceEEEEEECCcccCCCCCCCcc--hHHHHHHHHHhcCCEEEEe
Confidence 578999999832 6778999999998 43333333 3667899999999999877
No 83
>PRK06489 hypothetical protein; Provisional
Probab=90.64 E-value=1.4 Score=32.89 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=24.1
Q ss_pred ccEEEEEeCCeeEeeCCCchhhH--HHHHHHHh------cCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYH--DLCSDIAA------RVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~--~~~~~la~------~~g~~vv~v~YRl 107 (122)
.|.||++||++- +... +. .+...+.. ..++.|+.+|+|=
T Consensus 69 gpplvllHG~~~---~~~~--~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G 115 (360)
T PRK06489 69 DNAVLVLHGTGG---SGKS--FLSPTFAGELFGPGQPLDASKYFIILPDGIG 115 (360)
T ss_pred CCeEEEeCCCCC---chhh--hccchhHHHhcCCCCcccccCCEEEEeCCCC
Confidence 688999999873 2222 22 23333311 2379999999984
No 84
>PRK10349 carboxylesterase BioH; Provisional
Probab=90.39 E-value=0.55 Score=32.89 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=25.8
Q ss_pred cEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 65 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
|.||++||.|. +... |..+...|.. .+.|+.+|+|=
T Consensus 14 ~~ivllHG~~~---~~~~--w~~~~~~L~~--~~~vi~~Dl~G 49 (256)
T PRK10349 14 VHLVLLHGWGL---NAEV--WRCIDEELSS--HFTLHLVDLPG 49 (256)
T ss_pred CeEEEECCCCC---ChhH--HHHHHHHHhc--CCEEEEecCCC
Confidence 56999999652 3333 5666777754 58999999984
No 85
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=90.34 E-value=4.6 Score=31.27 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=46.5
Q ss_pred EEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 33 VSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 33 ~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
..+=++......+.+|.+.+............|.+|++||=.+ |+.+. |-.-....|.+.|+.+|..|-|=..
T Consensus 94 ~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg--~S~~~--YVr~lv~~a~~~G~r~VVfN~RG~~ 166 (409)
T KOG1838|consen 94 TREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTG--GSHES--YVRHLVHEAQRKGYRVVVFNHRGLG 166 (409)
T ss_pred eeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCC--CChhH--HHHHHHHHHHhCCcEEEEECCCCCC
Confidence 3444444444558999987655421100156799999999654 34443 5555556666779999999998533
No 86
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=90.25 E-value=0.76 Score=33.91 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
...|.||++||.+ ++... |..+...|.. ++.|+.+|+|-.-
T Consensus 129 ~~~~~vl~~HG~~---~~~~~--~~~~~~~l~~--~~~v~~~d~~g~G 169 (371)
T PRK14875 129 GDGTPVVLIHGFG---GDLNN--WLFNHAALAA--GRPVIALDLPGHG 169 (371)
T ss_pred CCCCeEEEECCCC---Cccch--HHHHHHHHhc--CCEEEEEcCCCCC
Confidence 4467899999854 23333 5556666654 4999999998543
No 87
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=89.34 E-value=1.4 Score=32.33 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=35.4
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..+.|.+.. .+..+||.+||.+= ... -|..++..|+.. |+.|+..|-|=
T Consensus 22 ~~~~~~~~~~-------~~~g~Vvl~HG~~E---h~~--ry~~la~~l~~~-G~~V~~~D~RG 71 (298)
T COG2267 22 LRYRTWAAPE-------PPKGVVVLVHGLGE---HSG--RYEELADDLAAR-GFDVYALDLRG 71 (298)
T ss_pred EEEEeecCCC-------CCCcEEEEecCchH---HHH--HHHHHHHHHHhC-CCEEEEecCCC
Confidence 5666666553 23389999999972 122 256677788776 99999999984
No 88
>PRK03592 haloalkane dehalogenase; Provisional
Probab=89.21 E-value=0.71 Score=33.14 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.5
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
..|.||++||.+ ++... |..++..|+.+ + .|+++|.|=
T Consensus 26 ~g~~vvllHG~~---~~~~~--w~~~~~~L~~~-~-~via~D~~G 63 (295)
T PRK03592 26 EGDPIVFLHGNP---TSSYL--WRNIIPHLAGL-G-RCLAPDLIG 63 (295)
T ss_pred CCCEEEEECCCC---CCHHH--HHHHHHHHhhC-C-EEEEEcCCC
Confidence 347899999975 23333 67777788775 4 999999983
No 89
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=89.12 E-value=0.72 Score=34.10 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=43.4
Q ss_pred eEEeeEEecCC--CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhc---CCcEEEEEcCC
Q 042985 32 AVSKDVPVNQS--NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAAR---VPAVIVSVDYR 106 (122)
Q Consensus 32 v~~~~v~~~~~--~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~---~g~~vv~v~YR 106 (122)
...+++.+.+. ...++-+|.|.+.++. .+.|+++.+||=-|..-..-. ..+..+..+ ..+++|.++|-
T Consensus 67 ~~~~~~~~~~~l~~~~~~vv~lppgy~~~---~k~pvl~~~DG~~~~~~g~i~----~~~dsli~~g~i~pai~vgid~~ 139 (299)
T COG2382 67 GPVEEILYSSELLSERRRVVYLPPGYNPL---EKYPVLYLQDGQDWFRSGRIP----RILDSLIAAGEIPPAILVGIDYI 139 (299)
T ss_pred CchhhhhhhhhhccceeEEEEeCCCCCcc---ccccEEEEeccHHHHhcCChH----HHHHHHHHcCCCCCceEEecCCC
Confidence 33455555433 3467788888876654 899999999998886443332 333344333 25778888874
No 90
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=88.55 E-value=2.5 Score=30.69 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...++++|.||-+.-.| . ...+...+...+++.+++.||+=
T Consensus 58 ~~~~~lly~hGNa~Dlg---q--~~~~~~~l~~~ln~nv~~~DYSG 98 (258)
T KOG1552|consen 58 AAHPTLLYSHGNAADLG---Q--MVELFKELSIFLNCNVVSYDYSG 98 (258)
T ss_pred ccceEEEEcCCcccchH---H--HHHHHHHHhhcccceEEEEeccc
Confidence 45689999999977666 2 45677788888899999999995
No 91
>PRK03204 haloalkane dehalogenase; Provisional
Probab=88.36 E-value=0.73 Score=33.25 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=26.2
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
.|.||++||.+- +. ..|..++..|.. ++.|+.+|+|---
T Consensus 34 ~~~iv~lHG~~~---~~--~~~~~~~~~l~~--~~~vi~~D~~G~G 72 (286)
T PRK03204 34 GPPILLCHGNPT---WS--FLYRDIIVALRD--RFRCVAPDYLGFG 72 (286)
T ss_pred CCEEEEECCCCc---cH--HHHHHHHHHHhC--CcEEEEECCCCCC
Confidence 478999999751 12 224555555543 6999999999643
No 92
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=88.16 E-value=4 Score=32.28 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHH-HHHHHHh--cCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHD-LCSDIAA--RVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~-~~~~la~--~~g~~vv~v~YRl 107 (122)
...|.||++||.+. +... |.. +...++. +.++.|+.+|+|=
T Consensus 199 ~~k~~VVLlHG~~~---s~~~--W~~~~~~~L~~~~~~~yrVia~Dl~G 242 (481)
T PLN03087 199 KAKEDVLFIHGFIS---SSAF--WTETLFPNFSDAAKSTYRLFAVDLLG 242 (481)
T ss_pred CCCCeEEEECCCCc---cHHH--HHHHHHHHHHHHhhCCCEEEEECCCC
Confidence 34578999999963 3332 332 2344432 3489999999985
No 93
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=87.69 E-value=3 Score=32.25 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+.-..||+|=||- .++.....+..+...+|.+-++++|+|+|--
T Consensus 32 Ke~kaIvfiI~Gf--G~dan~~~~d~~r~~iA~~fnvv~I~V~YHC 75 (403)
T PF11144_consen 32 KEIKAIVFIIPGF--GADANSNYLDFMREYIAKKFNVVVISVNYHC 75 (403)
T ss_pred CCceEEEEEeCCc--CCCcchHHHHHHHHHHHHhCCEEEEEeeeeh
Confidence 3444555555552 1344443345667789999999999999953
No 94
>PRK11460 putative hydrolase; Provisional
Probab=87.41 E-value=1.1 Score=31.57 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcC-CcEEEEEc
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARV-PAVIVSVD 104 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~-g~~vv~v~ 104 (122)
+..|+||++||-| ++... +..++..+.... .+.+++++
T Consensus 14 ~~~~~vIlLHG~G---~~~~~--~~~l~~~l~~~~~~~~~i~~~ 52 (232)
T PRK11460 14 PAQQLLLLFHGVG---DNPVA--MGEIGSWFAPAFPDALVVSVG 52 (232)
T ss_pred CCCcEEEEEeCCC---CChHH--HHHHHHHHHHHCCCCEEECCC
Confidence 5678999999987 34433 566777776542 34555554
No 95
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=87.29 E-value=1 Score=33.75 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.0
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..|.||++||.+- +... |..++..|+. ++.|+.+|+|
T Consensus 87 ~gp~lvllHG~~~---~~~~--w~~~~~~L~~--~~~via~Dl~ 123 (360)
T PLN02679 87 SGPPVLLVHGFGA---SIPH--WRRNIGVLAK--NYTVYAIDLL 123 (360)
T ss_pred CCCeEEEECCCCC---CHHH--HHHHHHHHhc--CCEEEEECCC
Confidence 3478999999762 3333 5666666654 7999999999
No 96
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=87.21 E-value=3.5 Score=37.37 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...|.||++||.+- +... |..+...|.. ++.|+.+|+|=
T Consensus 1369 ~~~~~vVllHG~~~---s~~~--w~~~~~~L~~--~~rVi~~Dl~G 1407 (1655)
T PLN02980 1369 AEGSVVLFLHGFLG---TGED--WIPIMKAISG--SARCISIDLPG 1407 (1655)
T ss_pred CCCCeEEEECCCCC---CHHH--HHHHHHHHhC--CCEEEEEcCCC
Confidence 45689999999873 3333 5666666654 58899999985
No 97
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=86.85 E-value=0.96 Score=33.89 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhc--CCcEEEEEcCCCCCCCCCCchh
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAAR--VPAVIVSVDYRLAPEHRLPAAY 117 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~--~g~~vv~v~YRlaPe~~~P~~~ 117 (122)
.++|++|+||| |............+...+..+ .++.|+.+|+.-.-...|..++
T Consensus 69 ~~~pt~iiiHG--w~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~ 124 (331)
T PF00151_consen 69 PSKPTVIIIHG--WTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAV 124 (331)
T ss_dssp TTSEEEEEE----TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHH
T ss_pred CCCCeEEEEcC--cCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchh
Confidence 68999999997 554331333345566666666 5899999999865444454443
No 98
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=84.68 E-value=4.2 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=22.6
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.||++||+.. +... ......+. ..++.|+.+|+|=
T Consensus 27 ~~~lvllHG~~~---~~~~---~~~~~~~~-~~~~~vi~~D~~G 63 (306)
T TIGR01249 27 GKPVVFLHGGPG---SGTD---PGCRRFFD-PETYRIVLFDQRG 63 (306)
T ss_pred CCEEEEECCCCC---CCCC---HHHHhccC-ccCCEEEEECCCC
Confidence 456899999743 2222 22222332 2479999999995
No 99
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=83.11 E-value=2.9 Score=31.27 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=36.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.|.++.+|| ..|++.. +..+.+.|+.+.+..++++|-|.
T Consensus 50 ~~~Pp~i~lHG---l~GS~~N--w~sv~k~Ls~~l~~~v~~vd~Rn 90 (315)
T KOG2382|consen 50 ERAPPAIILHG---LLGSKEN--WRSVAKNLSRKLGRDVYAVDVRN 90 (315)
T ss_pred CCCCceEEecc---cccCCCC--HHHHHHHhcccccCceEEEeccc
Confidence 78899999998 4578876 78999999999999999999996
No 100
>PLN02578 hydrolase
Probab=82.12 E-value=2.4 Score=31.55 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=24.6
Q ss_pred cEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 65 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
|.||++||-|- +... |...+..|+. ++.|+.+|+|=
T Consensus 87 ~~vvliHG~~~---~~~~--w~~~~~~l~~--~~~v~~~D~~G 122 (354)
T PLN02578 87 LPIVLIHGFGA---SAFH--WRYNIPELAK--KYKVYALDLLG 122 (354)
T ss_pred CeEEEECCCCC---CHHH--HHHHHHHHhc--CCEEEEECCCC
Confidence 56899998642 2222 4555666654 69999999994
No 101
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=80.60 E-value=22 Score=26.76 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=43.6
Q ss_pred eEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 042985 32 AVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEH 111 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~ 111 (122)
+..+-+++ +++++++-. ... +..|+|+++||=- .....++.....|+.+ |+.|+++|.|=--..
T Consensus 22 ~~hk~~~~---~gI~~h~~e--~g~-----~~gP~illlHGfP-----e~wyswr~q~~~la~~-~~rviA~DlrGyG~S 85 (322)
T KOG4178|consen 22 ISHKFVTY---KGIRLHYVE--GGP-----GDGPIVLLLHGFP-----ESWYSWRHQIPGLASR-GYRVIAPDLRGYGFS 85 (322)
T ss_pred cceeeEEE---ccEEEEEEe--ecC-----CCCCEEEEEccCC-----ccchhhhhhhhhhhhc-ceEEEecCCCCCCCC
Confidence 66677777 446665443 222 7789999999831 2222246666777776 899999999964443
Q ss_pred CCCc
Q 042985 112 RLPA 115 (122)
Q Consensus 112 ~~P~ 115 (122)
.-|.
T Consensus 86 d~P~ 89 (322)
T KOG4178|consen 86 DAPP 89 (322)
T ss_pred CCCC
Confidence 3333
No 102
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=80.38 E-value=4 Score=23.57 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEE
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVS 102 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~ 102 (122)
.+.|.++.+|||. .+. .+.++..+|.+.|+.++.
T Consensus 29 ~~~~~~~lvhGga----~~G---aD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 29 ARHPDMVLVHGGA----PKG---ADRIAARWARERGVPVIR 62 (71)
T ss_pred HhCCCEEEEECCC----CCC---HHHHHHHHHHHCCCeeEE
Confidence 4558899999985 122 378889999998887653
No 103
>PRK07581 hypothetical protein; Validated
Probab=80.27 E-value=2.9 Score=30.71 Aligned_cols=42 Identities=12% Similarity=-0.138 Sum_probs=24.4
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHH---HHHHhcCCcEEEEEcCCCCCC
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLC---SDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~---~~la~~~g~~vv~v~YRlaPe 110 (122)
..|+|++.||++|.. .. +...+ ..|.. .++.|+++|+|=..+
T Consensus 40 ~~~~vll~~~~~~~~---~~--~~~~~~~~~~l~~-~~~~vi~~D~~G~G~ 84 (339)
T PRK07581 40 KDNAILYPTWYSGTH---QD--NEWLIGPGRALDP-EKYFIIIPNMFGNGL 84 (339)
T ss_pred CCCEEEEeCCCCCCc---cc--chhhccCCCccCc-CceEEEEecCCCCCC
Confidence 457778778777632 22 11111 13332 379999999986443
No 104
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=79.86 E-value=12 Score=30.12 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=37.3
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEEEeCC---eeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVYVHGG---ALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGG---g~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+.+.+.-|.|.+.. ...+-|+++||- +|+.--.. ...+++.|+.+ |+.|+.+|+|-
T Consensus 172 ~~~eLi~Y~P~t~~-----~~~~PlLiVp~~i~k~yilDL~p---~~Slv~~L~~q-Gf~V~~iDwrg 230 (532)
T TIGR01838 172 ELFQLIQYEPTTET-----VHKTPLLIVPPWINKYYILDLRP---QNSLVRWLVEQ-GHTVFVISWRN 230 (532)
T ss_pred CcEEEEEeCCCCCc-----CCCCcEEEECcccccceeeeccc---chHHHHHHHHC-CcEEEEEECCC
Confidence 44788889887653 345667778873 22211111 24788888886 99999999985
No 105
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=79.46 E-value=9.6 Score=29.62 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=35.1
Q ss_pred eEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
++.-++.+.+ ..+...+..|... ++.|+||.+=|- +.....+.......+...|+.++.+|-.=
T Consensus 165 i~~v~iP~eg-~~I~g~LhlP~~~------~p~P~VIv~gGl-----Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG 228 (411)
T PF06500_consen 165 IEEVEIPFEG-KTIPGYLHLPSGE------KPYPTVIVCGGL-----DSLQEDLYRLFRDYLAPRGIAMLTVDMPG 228 (411)
T ss_dssp EEEEEEEETT-CEEEEEEEESSSS------S-EEEEEEE--T-----TS-GGGGHHHHHCCCHHCT-EEEEE--TT
T ss_pred cEEEEEeeCC-cEEEEEEEcCCCC------CCCCEEEEeCCc-----chhHHHHHHHHHHHHHhCCCEEEEEccCC
Confidence 5666677755 5578888888843 788987774332 12111234444443334599999998764
No 106
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=78.07 E-value=6.6 Score=30.77 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhc-CCcEEEEEcCCCCCCCCCCc
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAAR-VPAVIVSVDYRLAPEHRLPA 115 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~-~g~~vv~v~YRlaPe~~~P~ 115 (122)
...|.+|+|||-+-. +.... ....++..+..+ .++.|+++|++-.-...+|.
T Consensus 39 ~~~ptvIlIHG~~~s-~~~~~-w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~ 91 (442)
T TIGR03230 39 HETKTFIVIHGWTVT-GMFES-WVPKLVAALYEREPSANVIVVDWLSRAQQHYPT 91 (442)
T ss_pred CCCCeEEEECCCCcC-Ccchh-hHHHHHHHHHhccCCCEEEEEECCCcCCCCCcc
Confidence 567999999996531 11111 112344455433 36899999999655556664
No 107
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=77.60 E-value=3.9 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.4
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLA 108 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 108 (122)
.|++||+|| |+... |..+++.+..+ .+.|+.++++-.
T Consensus 2 ~lf~~p~~g---G~~~~--y~~la~~l~~~-~~~v~~i~~~~~ 38 (229)
T PF00975_consen 2 PLFCFPPAG---GSASS--YRPLARALPDD-VIGVYGIEYPGR 38 (229)
T ss_dssp EEEEESSTT---CSGGG--GHHHHHHHTTT-EEEEEEECSTTS
T ss_pred eEEEEcCCc---cCHHH--HHHHHHhCCCC-eEEEEEEecCCC
Confidence 588999998 55555 78888888776 578888888754
No 108
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=77.45 E-value=1.1 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
+..|++||+ ||-+-..... ....+...+|++.|+.+|.++.|---+
T Consensus 27 ~~gpifl~~-ggE~~~~~~~--~~~~~~~~lA~~~~a~~v~lEHRyYG~ 72 (434)
T PF05577_consen 27 PGGPIFLYI-GGEGPIEPFW--INNGFMWELAKEFGALVVALEHRYYGK 72 (434)
T ss_dssp TTSEEEEEE---SS-HHHHH--HH-HHHHHHHHHHTEEEEEE--TTSTT
T ss_pred CCCCEEEEE-CCCCccchhh--hcCChHHHHHHHcCCcEEEeehhhhcC
Confidence 447888887 4443222111 123477899999999999999997543
No 109
>COG1647 Esterase/lipase [General function prediction only]
Probab=76.46 E-value=3.5 Score=29.51 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=27.5
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
...|++||| |. |+... ...+.+.|..+ |+.|.+++|+
T Consensus 15 ~~AVLllHG--FT-Gt~~D--vr~Lgr~L~e~-GyTv~aP~yp 51 (243)
T COG1647 15 NRAVLLLHG--FT-GTPRD--VRMLGRYLNEN-GYTVYAPRYP 51 (243)
T ss_pred CEEEEEEec--cC-CCcHH--HHHHHHHHHHC-CceEecCCCC
Confidence 378999997 43 55554 46666666665 9999999997
No 110
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=74.44 E-value=15 Score=25.77 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..|+.|..|-=-...|+..+.......+. ..+.|+.++-+|||-
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~-l~~~G~atlRfNfRg 70 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARA-LVKRGFATLRFNFRG 70 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHH-HHhCCceEEeecccc
Confidence 778899998877666666766433344444 445699999999997
No 111
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=74.00 E-value=9.4 Score=28.30 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCcEEEEEcCCC
Q 042985 86 HDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YRl 107 (122)
..++..|+.+ |+.|+.+|.|=
T Consensus 64 ~~~~~~l~~~-G~~V~~~D~rG 84 (332)
T TIGR01607 64 DSWIENFNKN-GYSVYGLDLQG 84 (332)
T ss_pred HHHHHHHHHC-CCcEEEecccc
Confidence 3567777776 99999999974
No 112
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=71.95 E-value=25 Score=27.26 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=42.7
Q ss_pred eEEeeEEecCCCCEEEEEE-eeCCCCCCCCCCCccEEEEEeC-----CeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 32 AVSKDVPVNQSNKTWVRIF-LPRQALDSSTKTKLPLIVYVHG-----GALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy-~P~~~~~~~~~~~~pvvv~iHG-----Gg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
...++..+.++++--+.+- .|... .++|+|+..|| ..|+...+.. .+..+..+.|+-|+.-|-
T Consensus 46 y~~E~h~V~T~DgYiL~lhRIp~~~------~~rp~Vll~HGLl~sS~~Wv~n~p~~-----sLaf~LadaGYDVWLgN~ 114 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGYILTLHRIPRGK------KKRPVVLLQHGLLASSSSWVLNGPEQ-----SLAFLLADAGYDVWLGNN 114 (403)
T ss_pred CceEEEEEEccCCeEEEEeeecCCC------CCCCcEEEeeccccccccceecCccc-----cHHHHHHHcCCceeeecC
Confidence 4566777777777433332 24433 67899999998 5777655443 245555667999999988
Q ss_pred CC
Q 042985 106 RL 107 (122)
Q Consensus 106 Rl 107 (122)
|-
T Consensus 115 RG 116 (403)
T KOG2624|consen 115 RG 116 (403)
T ss_pred cC
Confidence 83
No 113
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=71.23 E-value=3.8 Score=28.25 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=9.3
Q ss_pred CCccEEEEEeCCee
Q 042985 62 TKLPLIVYVHGGAL 75 (122)
Q Consensus 62 ~~~pvvv~iHGGg~ 75 (122)
+..|+||++||=|-
T Consensus 12 ~~~~lvi~LHG~G~ 25 (216)
T PF02230_consen 12 KAKPLVILLHGYGD 25 (216)
T ss_dssp T-SEEEEEE--TTS
T ss_pred CCceEEEEECCCCC
Confidence 77899999999763
No 114
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=69.32 E-value=39 Score=25.08 Aligned_cols=58 Identities=3% Similarity=-0.060 Sum_probs=40.3
Q ss_pred CCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 42 SNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 42 ~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
++.-.+-+|+|.... +..-++|.+||=|- +.+....-..++.-..+.|+..+++.-..
T Consensus 70 ~~~~flaL~~~~~~~-----~~~G~vIilp~~g~---~~d~p~~i~~LR~~L~~~GW~Tlsit~P~ 127 (310)
T PF12048_consen 70 GEERFLALWRPANSA-----KPQGAVIILPDWGE---HPDWPGLIAPLRRELPDHGWATLSITLPD 127 (310)
T ss_pred CCEEEEEEEecccCC-----CCceEEEEecCCCC---CCCcHhHHHHHHHHhhhcCceEEEecCCC
Confidence 444667789998664 77889999999773 44433334555655566799999987665
No 115
>PRK07868 acyl-CoA synthetase; Validated
Probab=69.30 E-value=17 Score=31.26 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhH-----HHHHHHHhcCCcEEEEEcCCC
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYH-----DLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~-----~~~~~la~~~g~~vv~v~YRl 107 (122)
+...+.-|.|....... +...|.||++||-+- +... |+ .++..|+.+ |+.|+.+|+..
T Consensus 47 ~~~~l~~y~~~~~~~~~-~~~~~plllvhg~~~---~~~~--~d~~~~~s~v~~L~~~-g~~v~~~d~G~ 109 (994)
T PRK07868 47 PMYRLRRYFPPDNRPGQ-PPVGPPVLMVHPMMM---SADM--WDVTRDDGAVGILHRA-GLDPWVIDFGS 109 (994)
T ss_pred CcEEEEEeCCCCccccc-cCCCCcEEEECCCCC---Cccc--eecCCcccHHHHHHHC-CCEEEEEcCCC
Confidence 44788999887642200 035689999999531 1221 22 246667665 99999999875
No 116
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=10 Score=31.22 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=44.7
Q ss_pred EEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 33 VSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 33 ~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
..+.+.+.+.++ +.+.|..-+..+-. .+.|.++|.|||.=+.-.+.. ..--..|. +.|++++-.+-|=+-|
T Consensus 440 ~~~r~~~~SkDGt~VPM~Iv~kk~~k~d---g~~P~LLygYGay~isl~p~f---~~srl~ll-d~G~Vla~a~VRGGGe 512 (712)
T KOG2237|consen 440 VVERIEVSSKDGTKVPMFIVYKKDIKLD---GSKPLLLYGYGAYGISLDPSF---RASRLSLL-DRGWVLAYANVRGGGE 512 (712)
T ss_pred EEEEEEEecCCCCccceEEEEechhhhc---CCCceEEEEecccceeecccc---ccceeEEE-ecceEEEEEeeccCcc
Confidence 445566666665 77777774433322 688999999999655433332 22222333 3699988888886655
Q ss_pred C
Q 042985 111 H 111 (122)
Q Consensus 111 ~ 111 (122)
.
T Consensus 513 ~ 513 (712)
T KOG2237|consen 513 Y 513 (712)
T ss_pred c
Confidence 3
No 117
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=11 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=14.5
Q ss_pred CCccEEEEEeCCeeEeeC
Q 042985 62 TKLPLIVYVHGGALILLS 79 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~ 79 (122)
.+...+|.|||.|.+...
T Consensus 99 ~~~kLlVLIHGSGvVrAG 116 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRAG 116 (297)
T ss_pred CccceEEEEecCceEecc
Confidence 556799999999998543
No 118
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=65.71 E-value=54 Score=24.44 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=40.8
Q ss_pred eEEeeEEecCCCC--EEEE-EEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNK--TWVR-IFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~--~~~~-iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+..+.+..+.+.+ +.++ +|.-...++ .+...||=+||.- |+..+ -.+++....+.|+.++.+||.=
T Consensus 4 ~~~~~~k~~~~~~~~~~~~a~y~D~~~~g----s~~gTVv~~hGsP---GSH~D---FkYi~~~l~~~~iR~I~iN~PG 72 (297)
T PF06342_consen 4 LVRKLVKFQAENGKIVTVQAVYEDSLPSG----SPLGTVVAFHGSP---GSHND---FKYIRPPLDEAGIRFIGINYPG 72 (297)
T ss_pred eEEEEEEcccccCceEEEEEEEEecCCCC----CCceeEEEecCCC---CCccc---hhhhhhHHHHcCeEEEEeCCCC
Confidence 3345555555544 4443 444333332 5566899999975 44444 3456666667799999999974
No 119
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=62.56 E-value=14 Score=26.13 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcE---EEEEcCCCCCC
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSDIAARVPAV---IVSVDYRLAPE 110 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~---vv~v~YRlaPe 110 (122)
||++||=+ ++.. ..|..+...|..+ |+. +++.+|--.+.
T Consensus 4 VVlVHG~~---~~~~-~~w~~~~~~l~~~-GY~~~~vya~tyg~~~~ 45 (219)
T PF01674_consen 4 VVLVHGTG---GNAY-SNWSTLAPYLKAA-GYCDSEVYALTYGSGNG 45 (219)
T ss_dssp EEEE--TT---TTTC-GGCCHHHHHHHHT-T--CCCEEEE--S-CCH
T ss_pred EEEECCCC---cchh-hCHHHHHHHHHHc-CCCcceeEeccCCCCCC
Confidence 68899987 3232 2367777777776 988 89999976543
No 120
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=61.98 E-value=43 Score=25.63 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=44.9
Q ss_pred eEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 32 AVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 32 v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
...+.+.+.. +++.+|-+.=..... ++...|++.=|-|...-.... ...+....+++.++++.|+..|||=.-
T Consensus 110 ~~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg 183 (365)
T PF05677_consen 110 SSVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVG 183 (365)
T ss_pred cceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccc
Confidence 4455555544 566666554332222 566788888777665444211 002345678899999999999999543
No 121
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=61.86 E-value=15 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=16.5
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCC
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGG 73 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGG 73 (122)
+....|..+... +..|+++|++||
T Consensus 63 lFyw~~~s~~~~-----~~~Pl~lwlnGG 86 (462)
T PTZ00472 63 YFYWAFGPRNGN-----PEAPVLLWMTGG 86 (462)
T ss_pred EEEEEEEcCCCC-----CCCCEEEEECCC
Confidence 444555444332 778999999999
No 122
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=61.70 E-value=28 Score=20.80 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
.+.--+++||.|-|+ |......+ ..+..+ ..+=..|.+.|+.
T Consensus 23 ~~~~~vl~Fh~G~fi-Gt~t~~p~-~~~~v~--~~~~~~V~V~Y~~ 64 (89)
T PF14041_consen 23 SSPQQVLFFHDGEFI-GTATPDPY-GYIDVI--RSTDDTVTVQYRW 64 (89)
T ss_pred CCCeEEEEEECCEEc-ccCCcccc-CceeEE--eeCCCEEEEEEEe
Confidence 444688999999998 34433112 111222 2344567788883
No 123
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=61.39 E-value=28 Score=24.01 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=27.0
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
.-+||.-||-|= +.++......+..|+.+ |+.|+-.++.
T Consensus 14 ~~tilLaHGAGa---smdSt~m~~~a~~la~~-G~~vaRfefp 52 (213)
T COG3571 14 PVTILLAHGAGA---SMDSTSMTAVAAALARR-GWLVARFEFP 52 (213)
T ss_pred CEEEEEecCCCC---CCCCHHHHHHHHHHHhC-ceeEEEeecc
Confidence 346677799884 44444457778888887 9988776653
No 124
>PRK11071 esterase YqiA; Provisional
Probab=60.34 E-value=19 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred cEEEEEeCCeeEeeCCCchhhH-HHHHHHHhc--CCcEEEEEcCCC
Q 042985 65 PLIVYVHGGALILLSAATKIYH-DLCSDIAAR--VPAVIVSVDYRL 107 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~-~~~~~la~~--~g~~vv~v~YRl 107 (122)
|.|||+||-+ ++..+ +. .....++.+ .++.++.++.+-
T Consensus 2 p~illlHGf~---ss~~~--~~~~~~~~~l~~~~~~~~v~~~dl~g 42 (190)
T PRK11071 2 STLLYLHGFN---SSPRS--AKATLLKNWLAQHHPDIEMIVPQLPP 42 (190)
T ss_pred CeEEEECCCC---CCcch--HHHHHHHHHHHHhCCCCeEEeCCCCC
Confidence 6799999954 23333 22 223333322 367888888764
No 125
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=58.94 E-value=15 Score=24.41 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+.+++||+|+.++|.-..... ..+......+.. .|+.++.+..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~ 71 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVST 71 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 346899999999997544432 223334445544 3777777753
No 126
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=58.02 E-value=22 Score=25.51 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=29.4
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC--CCCCCCCCc
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR--LAPEHRLPA 115 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR--laPe~~~P~ 115 (122)
.-++|-|+|-+ ...+..++..+|+.|..+|-| ..++..||.
T Consensus 101 ~~L~IfGaG~v---------a~~la~la~~lGf~V~v~D~R~~~~~~~~~~~ 143 (246)
T TIGR02964 101 PHVVLFGAGHV---------GRALVRALAPLPCRVTWVDSREAEFPEDLPDG 143 (246)
T ss_pred CEEEEECCcHH---------HHHHHHHHhcCCCEEEEEeCCcccccccCCCC
Confidence 45667787742 456788899999999999988 445555553
No 127
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=56.60 E-value=25 Score=25.59 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=32.6
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCch
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAA 116 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~ 116 (122)
+..++||+|..+ |+..... ....+..++.+.|+.|+.++..-.+.-.||..
T Consensus 165 ~~k~~Lv~F~As-wCp~C~~---~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~ 215 (271)
T TIGR02740 165 AKKSGLFFFFKS-DCPYCHQ---QAPILQAFEDRYGIEVLPVSVDGGPLPGFPNA 215 (271)
T ss_pred cCCeEEEEEECC-CCccHHH---HhHHHHHHHHHcCcEEEEEeCCCCccccCCcc
Confidence 356888888886 6543333 36677888888887776666544333335543
No 128
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=54.50 E-value=14 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhh
Q 042985 86 HDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDA 120 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~ 120 (122)
.+.+..||. .|+.|. ||.|.||.+.|..+.++
T Consensus 157 TPlS~YLA~-~G~KvA--N~PLvpe~~lP~~L~~~ 188 (269)
T PRK05339 157 TPTSLYLAN-KGIKAA--NYPLVPEVPLPEELFPI 188 (269)
T ss_pred cHHHHHHHc-cCCceE--eeCCCCCCCCCHHHHhC
Confidence 466778888 499885 89999999999988764
No 129
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=52.44 E-value=13 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhh
Q 042985 86 HDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDA 120 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~ 120 (122)
.+.+..||. .|+.|. ||.|.||.+.|..+.++
T Consensus 151 TPlS~YLA~-~G~KvA--N~PLvpe~~lP~~L~~~ 182 (255)
T PF03618_consen 151 TPLSMYLAN-KGYKVA--NVPLVPEVPLPEELFEV 182 (255)
T ss_pred CchhHHHHh-cCccee--ecCcCCCCCCCHHHHhC
Confidence 356678888 499985 89999999999988765
No 130
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=51.58 E-value=27 Score=26.23 Aligned_cols=13 Identities=38% Similarity=0.882 Sum_probs=9.8
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
+..|++||+.||-
T Consensus 38 ~~~Pl~~wlnGGP 50 (415)
T PF00450_consen 38 EDDPLILWLNGGP 50 (415)
T ss_dssp CSS-EEEEEE-TT
T ss_pred CCccEEEEecCCc
Confidence 7889999999993
No 131
>COG0400 Predicted esterase [General function prediction only]
Probab=50.93 E-value=18 Score=25.34 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEc
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~ 104 (122)
...|+||++||=| |+..+ +-.+...+.- ++.++++.
T Consensus 16 p~~~~iilLHG~G---gde~~--~~~~~~~~~P--~~~~is~r 51 (207)
T COG0400 16 PAAPLLILLHGLG---GDELD--LVPLPELILP--NATLVSPR 51 (207)
T ss_pred CCCcEEEEEecCC---CChhh--hhhhhhhcCC--CCeEEcCC
Confidence 6678999999988 44433 3333333332 45565553
No 132
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=50.75 E-value=97 Score=22.71 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=37.6
Q ss_pred eEEeeEEecCCCC-EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 32 AVSKDVPVNQSNK-TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 32 v~~~~v~~~~~~~-~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
...+++....... -++.|+.|+...+. .+.|||.++=|..+. +... ..+...++..--.+.|.+.|+.
T Consensus 9 ~~~~~l~s~~~~~~yri~i~~P~~~~~~---~~YpVlY~lDGn~vf-~~~~----~~~~~~~~~~~~~~iv~iGye~ 77 (264)
T COG2819 9 FRERDLKSANTGRKYRIFIATPKNYPKP---GGYPVLYMLDGNAVF-NALT----EIMLRILADLPPPVIVGIGYET 77 (264)
T ss_pred ceeEeeeecCCCcEEEEEecCCCCCCCC---CCCcEEEEecchhhh-chHH----HHhhhhhhcCCCceEEEecccc
Confidence 4455555543333 57888999887643 446665555555432 2222 2334455544345677888876
No 133
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=48.62 E-value=43 Score=21.39 Aligned_cols=15 Identities=13% Similarity=0.414 Sum_probs=11.8
Q ss_pred CCccEEEEEeCCeeE
Q 042985 62 TKLPLIVYVHGGALI 76 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~ 76 (122)
.+..++||+||.-|-
T Consensus 54 ~~~klaIfVDGcfWH 68 (117)
T TIGR00632 54 DEYRCVIFIHGCFWH 68 (117)
T ss_pred cCCCEEEEEcccccc
Confidence 345699999999776
No 134
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=47.88 E-value=43 Score=21.71 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCcEEEEEcCC
Q 042985 86 HDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YR 106 (122)
...+.+++...|+.|..+|=|
T Consensus 10 a~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-
T ss_pred HHHHHHHHHhCCCEEEEEcCC
Confidence 456788899999999999988
No 135
>PRK15000 peroxidase; Provisional
Probab=46.67 E-value=29 Score=23.93 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=27.1
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..++||++|-+.|....... ..+......+..+ |+.|+.+..-
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D 77 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFD 77 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECC
Confidence 45899999999996544432 2234445555543 7777776543
No 136
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=45.35 E-value=20 Score=27.33 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=17.8
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCc
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPA 98 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~ 98 (122)
-.+.+|||||..-......-..+-..+.+..|+
T Consensus 222 ~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv 254 (365)
T PF04443_consen 222 GSIVIHGGGWKGRRKEAVSREEFYARLQEVFGV 254 (365)
T ss_pred CCEEEeCCCCCccccCccCHHHHHHHHHHHHCC
Confidence 367899999985443321113344444444454
No 137
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=44.97 E-value=22 Score=22.00 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+..+++|+|. +.|+...... ...+..+..+.++.++.++..
T Consensus 24 ~gk~vvv~F~-a~~C~~C~~~---~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVW-ASWCAPCREE---HPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCCEEEEEEE-cCcCHHHHHH---HHHHHHHHHhcCcEEEEEECC
Confidence 4457888887 6776554443 455666777766888888753
No 138
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=44.53 E-value=44 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=23.3
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHHHHHHh-------cCCcEEEEEcCCCC
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLCSDIAA-------RVPAVIVSVDYRLA 108 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~-------~~g~~vv~v~YRla 108 (122)
....||||||-+ |+... .+.+...+.+ ...+.++++||.-.
T Consensus 3 ~g~pVlFIhG~~---Gs~~q--~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~ 50 (225)
T PF07819_consen 3 SGIPVLFIHGNA---GSYKQ--VRSLASELQRKALLNDNSSHFDFFTVDFNEE 50 (225)
T ss_pred CCCEEEEECcCC---CCHhH--HHHHHHHHhhhhhhccCccceeEEEeccCcc
Confidence 456789999943 44333 3333333311 12467888888754
No 139
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=43.92 E-value=38 Score=21.49 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCccEEEEEeCC------eeEeeCCCchhhHHHHHHHHhcC--CcEEEEEcCCC
Q 042985 62 TKLPLIVYVHGG------ALILLSAATKIYHDLCSDIAARV--PAVIVSVDYRL 107 (122)
Q Consensus 62 ~~~pvvv~iHGG------g~~~g~~~~~~~~~~~~~la~~~--g~~vv~v~YRl 107 (122)
+..|++|+|+++ .|....... .+.+..++.+. ++.++-++.--
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~---~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKA---EPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhh---chhHHHHHHHCCCCCEEEEEEcCC
Confidence 357999999997 787544443 45555666554 36778888644
No 140
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=43.72 E-value=40 Score=21.65 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=25.6
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+.+++||+|..+.|.-..... .........+.. .|+.++++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 445799999877665433322 112334444444 48888888753
No 141
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=41.23 E-value=16 Score=28.80 Aligned_cols=15 Identities=40% Similarity=0.498 Sum_probs=13.1
Q ss_pred CCccEEEEEeCCeeE
Q 042985 62 TKLPLIVYVHGGALI 76 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~ 76 (122)
.+.-+||+=||+||.
T Consensus 113 d~Y~LIiwnHG~GW~ 127 (476)
T TIGR02806 113 DKYMLIMANHGGGAK 127 (476)
T ss_pred cceeEEEEeCCCCCc
Confidence 567789999999998
No 142
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.71 E-value=21 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCc--EEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPA--VIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~--~vv~v~YR 106 (122)
....++||+||=.-.. +. -...+..+....++ .++...+.
T Consensus 16 ~~~~vlvfVHGyn~~f---~~--a~~r~aql~~~~~~~~~~i~FsWP 57 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF---ED--ALRRAAQLAHDLGFPGVVILFSWP 57 (233)
T ss_pred CCCeEEEEEeCCCCCH---HH--HHHHHHHHHHHhCCCceEEEEEcC
Confidence 5678999999965321 11 12233445555544 45555554
No 143
>PF10021 DUF2263: Uncharacterized protein conserved in bacteria (DUF2263); InterPro: IPR019261 This domain, found in various hypothetical bacterial and eukaryotic proteins, has no known function. ; PDB: 3SIJ_A 3SIG_A 3SII_A 3SIH_A.
Probab=39.93 E-value=10 Score=25.01 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=8.0
Q ss_pred CCeeEeeCCCc
Q 042985 72 GGALILLSAAT 82 (122)
Q Consensus 72 GGg~~~g~~~~ 82 (122)
||||..|....
T Consensus 90 GGG~~~Ga~AQ 100 (148)
T PF10021_consen 90 GGGFLNGARAQ 100 (148)
T ss_dssp TTTGGGT--SH
T ss_pred CCCcccCcchh
Confidence 99999987766
No 144
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=38.63 E-value=65 Score=25.49 Aligned_cols=14 Identities=29% Similarity=0.684 Sum_probs=12.0
Q ss_pred CCccEEEEEeCCee
Q 042985 62 TKLPLIVYVHGGAL 75 (122)
Q Consensus 62 ~~~pvvv~iHGGg~ 75 (122)
+..|+|||+-||-=
T Consensus 71 ~~dPlvLWLnGGPG 84 (454)
T KOG1282|consen 71 ETDPLVLWLNGGPG 84 (454)
T ss_pred CCCCEEEEeCCCCC
Confidence 67899999999953
No 145
>COG3150 Predicted esterase [General function prediction only]
Probab=38.38 E-value=28 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=22.4
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCCCCCCch
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAA 116 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~ 116 (122)
|+|+|| |.. |+.+ |.. ..+-...+-.+-.++|+.---..+|.+
T Consensus 2 ilYlHG--FnS-SP~s--hka--~l~~q~~~~~~~~i~y~~p~l~h~p~~ 44 (191)
T COG3150 2 ILYLHG--FNS-SPGS--HKA--VLLLQFIDEDVRDIEYSTPHLPHDPQQ 44 (191)
T ss_pred eEEEec--CCC-Cccc--HHH--HHHHHHHhccccceeeecCCCCCCHHH
Confidence 799997 554 5555 332 122222344556667765433444543
No 146
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=38.14 E-value=41 Score=24.91 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=23.9
Q ss_pred CccEEEEEeCCeeEeeCC---C---chhhHHHH---HHHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSA---A---TKIYHDLC---SDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~---~---~~~~~~~~---~~la~~~g~~vv~v~YRl 107 (122)
..|.||++||=+...-.. . ...|..++ ..+.. .++.|+.+|+|=
T Consensus 30 ~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~D~~G 82 (351)
T TIGR01392 30 RSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDT-DRYFVVCSNVLG 82 (351)
T ss_pred CCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCC-CceEEEEecCCC
Confidence 347999999955421000 0 00122222 13323 489999999985
No 147
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=37.22 E-value=54 Score=20.03 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.0
Q ss_pred EEEEeCCeeEeeCCC
Q 042985 67 IVYVHGGALILLSAA 81 (122)
Q Consensus 67 vv~iHGGg~~~g~~~ 81 (122)
.+|+|-|.|++..+.
T Consensus 73 tFYi~NGaFIms~kf 87 (99)
T PF15517_consen 73 TFYINNGAFIMSLKF 87 (99)
T ss_dssp -EEEETTEEEEEGGG
T ss_pred eEEEeCceEEEEhHH
Confidence 589999999987654
No 148
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=37.13 E-value=68 Score=20.19 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=23.0
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+.+++||++.-+.|.-..... ...+........|+.++.++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e--~~~l~~~~~~~~~~~vi~Is~ 66 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQ--TKRFNKEAAKLDNTVVLTISA 66 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHH--HHHHHHHHHhcCCCEEEEEEC
Confidence 345799999988775433322 122222222223788888764
No 149
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=36.85 E-value=48 Score=22.79 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhh
Q 042985 86 HDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYY 118 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~ 118 (122)
...+..++.+.|+.|+.++..-.++..||..+.
T Consensus 88 ~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~d 120 (181)
T PRK13728 88 DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALP 120 (181)
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEec
Confidence 456678888889999888877666778888774
No 150
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=36.61 E-value=81 Score=19.73 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=18.4
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEE
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSV 103 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v 103 (122)
+..++|||...||.. ...+..+....|+.+..+
T Consensus 85 ~~~~vvvyC~~~G~r---------s~~a~~~L~~~G~~v~~L 117 (128)
T cd01520 85 RDPKLLIYCARGGMR---------SQSLAWLLESLGIDVPLL 117 (128)
T ss_pred CCCeEEEEeCCCCcc---------HHHHHHHHHHcCCceeEe
Confidence 667899999643332 112234445567765444
No 151
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=35.88 E-value=45 Score=22.11 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+..+++|+|. +.|+-..... ...+..+..+ ++.++.+++.
T Consensus 62 ~gk~vll~F~-a~wC~~C~~~---~p~l~~l~~~-~~~vi~V~~~ 101 (173)
T TIGR00385 62 QGKPVLLNVW-ASWCPPCRAE---HPYLNELAKD-GLPIVGVDYK 101 (173)
T ss_pred CCCEEEEEEE-CCcCHHHHHH---HHHHHHHHHc-CCEEEEEECC
Confidence 4568999988 5676544432 3445666655 8888888874
No 152
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=35.86 E-value=38 Score=25.45 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.8
Q ss_pred ccEEEEEeCCeeEeeCCCc
Q 042985 64 LPLIVYVHGGALILLSAAT 82 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~ 82 (122)
-|=.+|+|-+||+.|..+.
T Consensus 288 I~g~vFvH~sGFigg~kt~ 306 (318)
T PF03690_consen 288 IPGAVFVHASGFIGGAKTR 306 (318)
T ss_pred CCCcEEEcCCCCeeecCCH
Confidence 3567999999999887765
No 153
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=48 Score=29.00 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEee
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILL 78 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g 78 (122)
.....+++.|..- .+.|-++|.|-|||.+.
T Consensus 898 ~~f~fd~~~~~~y------p~~pp~~~~~s~~~r~n 927 (1101)
T KOG0895|consen 898 GLFFFDFQFPQDY------PSSPPLVHYHSGGVRLN 927 (1101)
T ss_pred ceEEEEeecCCCC------CCCCCceEeecCceeeC
Confidence 3467899999887 67788899999998754
No 154
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=35.46 E-value=36 Score=20.83 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.7
Q ss_pred CCccEEEEEeCCeeEe
Q 042985 62 TKLPLIVYVHGGALIL 77 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~ 77 (122)
...|+|++.++|.|+.
T Consensus 68 ~~lP~i~~~~~g~~~V 83 (124)
T cd02421 68 LLLPAILLLKNGRACV 83 (124)
T ss_pred ccCCEEEEEcCCCEEE
Confidence 6789999999988864
No 155
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=35.38 E-value=47 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=26.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
..-|.|+|.-|+|+. +.+++. +|+-||+.|....|
T Consensus 250 ~~vPmi~fakG~g~~------------Le~l~~-tG~DVvgLDWTvdp 284 (359)
T KOG2872|consen 250 APVPMILFAKGSGGA------------LEELAQ-TGYDVVGLDWTVDP 284 (359)
T ss_pred CCCceEEEEcCcchH------------HHHHHh-cCCcEEeecccccH
Confidence 456999999888753 345555 49999999988766
No 156
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=35.16 E-value=88 Score=17.70 Aligned_cols=48 Identities=25% Similarity=0.124 Sum_probs=26.1
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcE--EE-EEcCCCCCCCCCCch
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSDIAARVPAV--IV-SVDYRLAPEHRLPAA 116 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~--vv-~v~YRlaPe~~~P~~ 116 (122)
.+|..|++|-..+.+. +.--+..+++-+|+. ++ +-+-.++|...+|-.
T Consensus 2 ~L~~~~~~~g~ps~sp--~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l 52 (73)
T cd03078 2 ELHVWGGDWGLPSVDP--ECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPAL 52 (73)
T ss_pred EEEEECCCCCCCcCCH--HHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEE
Confidence 4678888886544442 222233334434443 22 234467888888864
No 157
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=34.88 E-value=34 Score=22.40 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=22.1
Q ss_pred ccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcC-CcEEEEEcCC
Q 042985 64 LPLIVYVHGGALILLSAATKIYHDLCSDIAARV-PAVIVSVDYR 106 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~-g~~vv~v~YR 106 (122)
.|.++++||++.. ... +......+.... .+.++.+|.|
T Consensus 21 ~~~i~~~hg~~~~---~~~--~~~~~~~~~~~~~~~~~~~~d~~ 59 (282)
T COG0596 21 GPPLVLLHGFPGS---SSV--WRPVFKVLPALAARYRVIAPDLR 59 (282)
T ss_pred CCeEEEeCCCCCc---hhh--hHHHHHHhhccccceEEEEeccc
Confidence 4589999999853 221 222112222221 1789999998
No 158
>PTZ00445 p36-lilke protein; Provisional
Probab=34.88 E-value=47 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=24.6
Q ss_pred EEEEEeCCeeEeeCC--------CchhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 66 LIVYVHGGALILLSA--------ATKIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 66 vvv~iHGGg~~~g~~--------~~~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
.+|=+|-|||..... .++.+..++..+- +.|+.|+.+.|.
T Consensus 53 TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~-~~~I~v~VVTfS 100 (219)
T PTZ00445 53 TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK-NSNIKISVVTFS 100 (219)
T ss_pred hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH-HCCCeEEEEEcc
Confidence 456689999987651 1222344444443 358888887765
No 159
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=34.59 E-value=73 Score=21.78 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=25.3
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
.+++||+|+-+.|..+.... ..+......+.. .|+.|+.++.
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~-~g~~vigIS~ 73 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDVYSVST 73 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 34899999999997554442 112333334433 4777777753
No 160
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=34.08 E-value=37 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.9
Q ss_pred CccEEEEEeCCeeEeeCCCch
Q 042985 63 KLPLIVYVHGGALILLSAATK 83 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~ 83 (122)
.-|--+|+|-|||+.+.+...
T Consensus 275 GIpGc~F~Ha~gFig~~kt~E 295 (306)
T COG4286 275 GIPGCIFCHAGGFIGGNKTRE 295 (306)
T ss_pred CCCCeEEEecccceeccccHH
Confidence 457789999999998877653
No 161
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=34.06 E-value=65 Score=21.75 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=26.1
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+..++||+|+-+.|....... ..+......+..+ |+.|+.+...
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 345899999988897554432 1122333444433 7777777643
No 162
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=33.83 E-value=57 Score=24.07 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=9.3
Q ss_pred CcEEEEEcCC
Q 042985 97 PAVIVSVDYR 106 (122)
Q Consensus 97 g~~vv~v~YR 106 (122)
++.|+.+|+|
T Consensus 99 ~~~Vi~~Dl~ 108 (343)
T PRK08775 99 RFRLLAFDFI 108 (343)
T ss_pred ccEEEEEeCC
Confidence 7999999999
No 163
>COG4702 Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=33 Score=23.13 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=5.3
Q ss_pred EeCCeeE
Q 042985 70 VHGGALI 76 (122)
Q Consensus 70 iHGGg~~ 76 (122)
+|||||-
T Consensus 117 ~~GG~fp 123 (168)
T COG4702 117 AHGGGFP 123 (168)
T ss_pred hccCcee
Confidence 6888884
No 164
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=33.29 E-value=70 Score=20.02 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCccEEEEEeCCeeEeeC
Q 042985 62 TKLPLIVYVHGGALILLS 79 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~ 79 (122)
.+.|.+||+++|-++..-
T Consensus 81 ~~~PaLvf~R~g~~lG~i 98 (107)
T PF07449_consen 81 RRWPALVFFRDGRYLGAI 98 (107)
T ss_dssp TSSSEEEEEETTEEEEEE
T ss_pred ccCCeEEEEECCEEEEEe
Confidence 578999999999987543
No 165
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=33.26 E-value=1e+02 Score=19.00 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=21.0
Q ss_pred CccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEE
Q 042985 63 KLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVI 100 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~v 100 (122)
..|+++.+||-++..+.........+.+.+...+..++
T Consensus 99 ~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~k~~~~ii 136 (139)
T PF13477_consen 99 NKKVIYTVHGSDFYNSSKKKKLKKFIIKFAFKRADKII 136 (139)
T ss_pred CCCEEEEecCCeeecCCchHHHHHHHHHHHHHhCCEEE
Confidence 36899999998885444332212334444444444443
No 166
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=32.78 E-value=35 Score=23.43 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=15.0
Q ss_pred CCccEEEEEeCCeeEeeCCC
Q 042985 62 TKLPLIVYVHGGALILLSAA 81 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~ 81 (122)
.+.--.||||.||.+.|-+.
T Consensus 35 ~k~g~eVyIh~~g~i~gkAk 54 (188)
T COG2411 35 LKPGSEVYIHSGGYIIGKAK 54 (188)
T ss_pred CCCCCEEEEEECCEEEEEEE
Confidence 44456899999999887553
No 167
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=32.35 E-value=18 Score=23.60 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=6.6
Q ss_pred EEeCCeeE
Q 042985 69 YVHGGALI 76 (122)
Q Consensus 69 ~iHGGg~~ 76 (122)
|||||.|-
T Consensus 1 ~f~ggv~G 8 (133)
T PF07680_consen 1 YFHGGVWG 8 (133)
T ss_pred Ceecceee
Confidence 68999984
No 168
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=31.96 E-value=1.5e+02 Score=21.45 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=29.3
Q ss_pred cEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEE--EEEcCCCCCCCCCCch
Q 042985 65 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVI--VSVDYRLAPEHRLPAA 116 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~v--v~v~YRlaPe~~~P~~ 116 (122)
--+|||+.|. ..........+..++.+.|+.| ||+|=...|+ ||..
T Consensus 145 ~GL~fFy~s~----Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~--fp~~ 192 (248)
T PRK13703 145 YGLMFFYRGQ----DPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPL--LPDS 192 (248)
T ss_pred ceEEEEECCC----CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC--CCCC
Confidence 5667777664 2333335778899999999887 5555454554 5443
No 169
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=31.70 E-value=33 Score=25.87 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=24.2
Q ss_pred CccEEEEEeCCeeEeeCCC-------c-hhhHHHHH---HHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSAA-------T-KIYHDLCS---DIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~-------~-~~~~~~~~---~la~~~g~~vv~v~YRl 107 (122)
..|.||++||-+-..-... . ..|..++. .+.. .++.|+++|.+=
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G 101 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLG 101 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCC
Confidence 4689999999985321100 0 01222221 2212 388999999874
No 170
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.50 E-value=19 Score=26.65 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=7.7
Q ss_pred EEEEeCCeeE
Q 042985 67 IVYVHGGALI 76 (122)
Q Consensus 67 vv~iHGGg~~ 76 (122)
.--+|||||-
T Consensus 54 ~WaVHGGGFY 63 (300)
T PF06181_consen 54 LWAVHGGGFY 63 (300)
T ss_pred eeeeeccccc
Confidence 4558999994
No 171
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=31.16 E-value=16 Score=28.09 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=9.5
Q ss_pred CCccEEEEEeCCee
Q 042985 62 TKLPLIVYVHGGAL 75 (122)
Q Consensus 62 ~~~pvvv~iHGGg~ 75 (122)
.+.-+|||=|||||
T Consensus 97 ~~y~LIlw~HG~Gw 110 (397)
T PF03415_consen 97 DRYGLILWDHGGGW 110 (397)
T ss_dssp CEEEEEEES-B-TT
T ss_pred ccEEEEEEECCCCC
Confidence 45667888899999
No 172
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=30.72 E-value=97 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=13.4
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEEEeC
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVYVHG 72 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~iHG 72 (122)
+++.++...-.+.. ++..-|+++||
T Consensus 76 ~g~~iHFih~rs~~-----~~aiPLll~HG 100 (112)
T PF06441_consen 76 DGLDIHFIHVRSKR-----PNAIPLLLLHG 100 (112)
T ss_dssp TTEEEEEEEE--S------TT-EEEEEE--
T ss_pred eeEEEEEEEeeCCC-----CCCeEEEEECC
Confidence 47777766555433 56677899998
No 173
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=30.41 E-value=85 Score=19.01 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+..+++|+|+ ..|+...... ...+..+..+...+.++.+.
T Consensus 19 ~~k~~vl~F~-~~~C~~C~~~---~~~l~~~~~~~~~i~i~~~~ 58 (123)
T cd03011 19 SGKPVLVYFW-ATWCPVCRFT---SPTVNQLAADYPVVSVALRS 58 (123)
T ss_pred CCCEEEEEEE-CCcChhhhhh---ChHHHHHHhhCCEEEEEccC
Confidence 3467888887 5565433332 44556666665555565543
No 174
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.34 E-value=1.4e+02 Score=18.65 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=23.0
Q ss_pred EEeCCeeEeeCCCc-----h-hhHHHHHHHHhcCCcEEEEEcCC
Q 042985 69 YVHGGALILLSAAT-----K-IYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 69 ~iHGGg~~~g~~~~-----~-~~~~~~~~la~~~g~~vv~v~YR 106 (122)
|+|||-++.-+... . ....+++.++.. |+..+.+...
T Consensus 39 ~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~-~~agL~i~~~ 81 (123)
T PF07905_consen 39 WLRGGELVLTTGYALRDDDEEELREFIRELAEK-GAAGLGIKTG 81 (123)
T ss_pred hCCCCeEEEECCcccCCCCHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 58888877654221 1 145667777775 7777776554
No 175
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=30.19 E-value=44 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=19.0
Q ss_pred ccEEEEEeCCee-----EeeCCCchhhHHHHHHHHh-cCCcEEEEEcCC
Q 042985 64 LPLIVYVHGGAL-----ILLSAATKIYHDLCSDIAA-RVPAVIVSVDYR 106 (122)
Q Consensus 64 ~pvvv~iHGGg~-----~~g~~~~~~~~~~~~~la~-~~g~~vv~v~YR 106 (122)
..-+|++-|=|| ..|..... |+.++..+.. ......+.+-|.
T Consensus 117 ~idlvlVP~lafd~~G~RLG~GgGy-YDR~L~~~~~~~~~~~~igl~~~ 164 (186)
T PF01812_consen 117 EIDLVLVPGLAFDRNGNRLGYGGGY-YDRFLARLPPGRKKPLKIGLAFD 164 (186)
T ss_dssp G-SEEEEE-SEEETTSBEE-SSSTH-HHHHHHHHTS-SS--EEEEEE-G
T ss_pred cCCEEEeCcEEECCCCCeEecCCCH-HHhHHHhhhcccCCCeEEEEeeh
Confidence 344566655544 44444332 7777777766 223444444443
No 176
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=30.07 E-value=1.7e+02 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=20.9
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+...-+|+|||=| .| ... +..-...|+. ...|.++|-
T Consensus 88 ~~~~plVliHGyG--Ag-~g~--f~~Nf~~La~--~~~vyaiDl 124 (365)
T KOG4409|consen 88 ANKTPLVLIHGYG--AG-LGL--FFRNFDDLAK--IRNVYAIDL 124 (365)
T ss_pred cCCCcEEEEeccc--hh-HHH--HHHhhhhhhh--cCceEEecc
Confidence 5667889999854 11 111 3344455665 455666553
No 177
>PLN02200 adenylate kinase family protein
Probab=29.57 E-value=99 Score=21.84 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=25.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEE
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSV 103 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v 103 (122)
.+.|.+|++.|.- |+.. ..++..|+.+.|+..++.
T Consensus 40 ~~~~~ii~I~G~P---GSGK----sT~a~~La~~~g~~his~ 74 (234)
T PLN02200 40 EKTPFITFVLGGP---GSGK----GTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CCCCEEEEEECCC---CCCH----HHHHHHHHHHhCCeEEEc
Confidence 5678889888874 3333 356788888889988877
No 178
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=29.14 E-value=1.4e+02 Score=21.74 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=22.5
Q ss_pred CccEEEEEeCCeeEeeCCCch--hhHHHHHHHHhcCCcEEEE
Q 042985 63 KLPLIVYVHGGALILLSAATK--IYHDLCSDIAARVPAVIVS 102 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~~--~~~~~~~~la~~~g~~vv~ 102 (122)
..+.++.+|||++. .+..+ .|...+..+..+ |+.++.
T Consensus 177 ~~~~i~~~~~~s~~--~k~Wp~e~~a~li~~l~~~-~~~ivl 215 (322)
T PRK10964 177 AGPYLVFLHATTRD--DKHWPEAHWRELIGLLAPS-GLRIKL 215 (322)
T ss_pred CCCeEEEEeCCCcc--cccCCHHHHHHHHHHHHHC-CCeEEE
Confidence 45678889999863 34332 245566666554 765544
No 179
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=29.03 E-value=1.5e+02 Score=19.33 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=26.0
Q ss_pred CccEEEEEeCCeeEeeCCC--chhhHHHHHHHHhcCCc-EEEEEcC
Q 042985 63 KLPLIVYVHGGALILLSAA--TKIYHDLCSDIAARVPA-VIVSVDY 105 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~--~~~~~~~~~~la~~~g~-~vv~v~Y 105 (122)
..++|||++-|.|.-+... ...+......+.. .|+ .|+.+..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~-~g~~~V~~iS~ 73 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA-KGVDEVICVSV 73 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH-CCCCEEEEEEC
Confidence 3589999999999866543 2223334445544 477 4766654
No 180
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=28.88 E-value=75 Score=21.94 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEE
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVS 102 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~ 102 (122)
.++-.|+|+-||+ -+..+.+++..+|+-.|.
T Consensus 22 ~~k~Kiv~iTGG~----------i~pia~kIaelTG~eaVd 52 (183)
T PF03612_consen 22 EKKNKIVYITGGG----------IPPIADKIAELTGAEAVD 52 (183)
T ss_pred CCCCEEEEEeCCC----------CCHHHHHHHHHHCCeecC
Confidence 4556899999886 246677787777766553
No 181
>PLN02209 serine carboxypeptidase
Probab=28.88 E-value=1.5e+02 Score=23.23 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=11.1
Q ss_pred CCccEEEEEeCC
Q 042985 62 TKLPLIVYVHGG 73 (122)
Q Consensus 62 ~~~pvvv~iHGG 73 (122)
+..|+++|+-||
T Consensus 66 ~~~Pl~lWlnGG 77 (437)
T PLN02209 66 QEDPLIIWLNGG 77 (437)
T ss_pred CCCCEEEEECCC
Confidence 678999999999
No 182
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.60 E-value=1.4e+02 Score=21.68 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=23.9
Q ss_pred CccEEEEEeCCeeEeeCCCc--hhhHHHHHHHHhcCCcEEEE
Q 042985 63 KLPLIVYVHGGALILLSAAT--KIYHDLCSDIAARVPAVIVS 102 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~--~~~~~~~~~la~~~g~~vv~ 102 (122)
..|.|++.||+++. .+.. ..|..+++.+..+ ++.++.
T Consensus 178 ~~~~i~i~~gas~~--~K~wp~e~~~~l~~~l~~~-~~~~vl 216 (319)
T TIGR02193 178 PAPYAVLLHATSRD--DKTWPEERWRELARLLLAR-GLQIVL 216 (319)
T ss_pred CCCEEEEEeCCCcc--cCCCCHHHHHHHHHHHHHC-CCeEEE
Confidence 56889999999873 3443 2345666677654 665554
No 183
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=28.48 E-value=42 Score=22.09 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.7
Q ss_pred CCccEEEEEeCCeeE
Q 042985 62 TKLPLIVYVHGGALI 76 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~ 76 (122)
.+...+||+||--|-
T Consensus 55 ~~y~~viFvHGCFWh 69 (150)
T COG3727 55 PKYRCVIFVHGCFWH 69 (150)
T ss_pred cCceEEEEEeeeecc
Confidence 345689999998774
No 184
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.46 E-value=1.7e+02 Score=18.93 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCCceEEeeEEecCCCCEEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCC
Q 042985 18 PSTAATPDPNDHTIAVSKDVPVNQSNKTWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVP 97 (122)
Q Consensus 18 ~~~~~~~~p~~~~~v~~~~v~~~~~~~~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g 97 (122)
|..-...+|..| ..+.-+.+++.-.-++.++-|--.. .. .-|.+-+--|.+|.....--..++..+.++.|
T Consensus 48 P~NiT~edpk~G--LkYAAvEVPsGVRGRmaliGPLIEe-----ad--AAIi~~~~p~~FGCiGC~RTNEl~~ylvR~k~ 118 (152)
T COG4050 48 PMNITPEDPKRG--LKYAAVEVPSGVRGRMALIGPLIEE-----AD--AAIIVEEAPFGFGCIGCARTNELCVYLVRRKG 118 (152)
T ss_pred CCcCCccccccc--ceeeEEecCCCccceeeeeehhhhh-----cc--eeeEeccCCcccceecccccchHHHHHhhhcC
Confidence 333344466655 7777777776655677777775432 11 22333444444443332112568889999999
Q ss_pred cEEEEEcCCCCC
Q 042985 98 AVIVSVDYRLAP 109 (122)
Q Consensus 98 ~~vv~v~YRlaP 109 (122)
+.++-+.|..+-
T Consensus 119 iPiLelkYP~s~ 130 (152)
T COG4050 119 IPILELKYPRSE 130 (152)
T ss_pred CceEEEeCCCcH
Confidence 999988887653
No 185
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=28.44 E-value=58 Score=21.68 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=19.0
Q ss_pred hHHHHHHHHhcCCcEEEE--EcCCCCCCC
Q 042985 85 YHDLCSDIAARVPAVIVS--VDYRLAPEH 111 (122)
Q Consensus 85 ~~~~~~~la~~~g~~vv~--v~YRlaPe~ 111 (122)
....+..||.++|++|-- -.||...+.
T Consensus 47 ~NeVLkALc~eAGw~Ve~DGTtyr~~~~~ 75 (150)
T PF05687_consen 47 NNEVLKALCREAGWTVEPDGTTYRKGCKP 75 (150)
T ss_pred HHHHHHHHHHhCCEEEccCCCeeccCCCC
Confidence 477889999999998742 347754433
No 186
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=28.23 E-value=1.8e+02 Score=22.31 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=32.9
Q ss_pred EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchh-hHHHHHHHHhcCCcEEEEEc
Q 042985 45 TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKI-YHDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 45 ~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~-~~~~~~~la~~~g~~vv~v~ 104 (122)
-++.+..|+.-.. +.+|++|.+.|-|= ....- ...++..|+++ |+.-+.++
T Consensus 77 a~~~~~~P~~~~~----~~rp~~IhLagTGD----h~f~rR~~l~a~pLl~~-gi~s~~le 128 (348)
T PF09752_consen 77 ARFQLLLPKRWDS----PYRPVCIHLAGTGD----HGFWRRRRLMARPLLKE-GIASLILE 128 (348)
T ss_pred eEEEEEECCcccc----CCCceEEEecCCCc----cchhhhhhhhhhHHHHc-CcceEEEe
Confidence 4567778876522 67999999999873 22200 12236777777 88777664
No 187
>PF10860 DUF2661: Protein of unknown function (DUF2661); InterPro: IPR020387 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf112; it is a family of uncharacterised viral proteins. This entry also represents the N-terminal region of Fowlpox virus (FPV) FPV217. The protein family is uncharacterised.
Probab=28.17 E-value=1.6e+02 Score=18.68 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=25.6
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEE
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVI 100 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~v 100 (122)
|-||.|-+-|+..+...+ ++.-++..|.+..+.|
T Consensus 4 VfVWYh~~~FV~NT~~~P-FwHNi~yha~~y~cyv 37 (113)
T PF10860_consen 4 VFVWYHDNEFVYNTDCFP-FWHNIQYHARRYKCYV 37 (113)
T ss_pred EEEEEeCCEEEeCCCCCc-chhhhhhhheeccEEE
Confidence 568999999999888776 4555677777666554
No 188
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=28.15 E-value=53 Score=19.95 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.6
Q ss_pred CCccEEEEEeCCeeEe
Q 042985 62 TKLPLIVYVHGGALIL 77 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~ 77 (122)
-..|+|++..+|.|+.
T Consensus 68 ~~lP~I~~~~~g~~~V 83 (121)
T cd02417 68 LPLPALAWDDDGGHFI 83 (121)
T ss_pred CCCCEEEEccCCCEEE
Confidence 6789999999988864
No 189
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=28.01 E-value=53 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARV 96 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~ 96 (122)
-.|||||-| |+..+ ...++.++..+.
T Consensus 47 PTIfIhGsg---G~asS--~~~Mv~ql~~~~ 72 (288)
T COG4814 47 PTIFIHGSG---GTASS--LNGMVNQLLPDY 72 (288)
T ss_pred ceEEEecCC---CChhH--HHHHHHHhhhcc
Confidence 348999987 56665 577888887763
No 190
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=27.83 E-value=1.5e+02 Score=23.13 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=11.2
Q ss_pred CCccEEEEEeCC
Q 042985 62 TKLPLIVYVHGG 73 (122)
Q Consensus 62 ~~~pvvv~iHGG 73 (122)
+..|+++|+-||
T Consensus 64 ~~~P~~lWlnGG 75 (433)
T PLN03016 64 KEDPLLIWLNGG 75 (433)
T ss_pred ccCCEEEEEcCC
Confidence 778999999999
No 191
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=27.65 E-value=63 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=18.5
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHH
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSD 91 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~ 91 (122)
.+.+..|-+|||+..........|...++.
T Consensus 8 ~~~~~~v~VHgGAG~~~~~~~~~~~~~l~~ 37 (414)
T PLN02937 8 QNRRFFVAVHVGAGYHAPSNEKALRSAMRR 37 (414)
T ss_pred cCCCeEEEEEeCCCCCchhhHHHHHHHHHH
Confidence 566789999999976543333334444443
No 192
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=27.43 E-value=79 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCCCCch
Q 042985 87 DLCSDIAARVPAVIVSVDYRLAPEHRLPAA 116 (122)
Q Consensus 87 ~~~~~la~~~g~~vv~v~YRlaPe~~~P~~ 116 (122)
.++..+..+ |++|+.+|| ..+..+|-..
T Consensus 17 ~~l~~~L~~-GyaVv~pDY-~Glg~~y~~~ 44 (290)
T PF03583_consen 17 PFLAAWLAR-GYAVVAPDY-EGLGTPYLNG 44 (290)
T ss_pred HHHHHHHHC-CCEEEecCC-CCCCCcccCc
Confidence 345555554 999999999 4555566443
No 193
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=27.43 E-value=58 Score=24.32 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
...|.||++||=| . +..+ |+..+..|....|..|+++|-
T Consensus 56 ~~~~pvlllHGF~--~-~~~~--w~~~~~~L~~~~~~~v~aiDl 94 (326)
T KOG1454|consen 56 KDKPPVLLLHGFG--A-SSFS--WRRVVPLLSKAKGLRVLAIDL 94 (326)
T ss_pred CCCCcEEEecccc--C-Cccc--HhhhccccccccceEEEEEec
Confidence 4678999999843 3 3444 677777888877788888764
No 194
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=27.38 E-value=38 Score=17.31 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=5.9
Q ss_pred EEEeCCee
Q 042985 68 VYVHGGAL 75 (122)
Q Consensus 68 v~iHGGg~ 75 (122)
+||+||--
T Consensus 4 ~~vfGG~~ 11 (49)
T PF13415_consen 4 LYVFGGYD 11 (49)
T ss_pred EEEECCcC
Confidence 78888853
No 195
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=26.81 E-value=70 Score=21.51 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAP 109 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaP 109 (122)
+..++||+|. ..|+-..... .+.+..+..+ |+.++.+++.-.+
T Consensus 67 ~gk~vvv~Fw-atwC~~C~~e---~p~l~~l~~~-~~~vi~v~~~~~~ 109 (185)
T PRK15412 67 QGKPVLLNVW-ATWCPTCRAE---HQYLNQLSAQ-GIRVVGMNYKDDR 109 (185)
T ss_pred CCCEEEEEEE-CCCCHHHHHH---HHHHHHHHHc-CCEEEEEECCCCH
Confidence 4567888888 5676444333 3445566554 8999999886543
No 196
>PRK13191 putative peroxiredoxin; Provisional
Probab=26.73 E-value=1.2e+02 Score=21.12 Aligned_cols=44 Identities=5% Similarity=0.166 Sum_probs=27.4
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
..++|||+|-+.|....... ..+......+.. .|+.|+.++...
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~Ds 77 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVDS 77 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 34799999999998655443 122333444444 388888776553
No 197
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=26.67 E-value=94 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCCCCchhhhhh
Q 042985 85 YHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAL 121 (122)
Q Consensus 85 ~~~~~~~la~~~g~~vv~v~YRlaPe~~~P~~~~D~~ 121 (122)
....++.++.. |-.|++++|-+-|..+.-..++|.+
T Consensus 232 ~e~~Lr~l~~~-G~~V~vieY~~d~~~~~~~r~~~~~ 267 (300)
T COG2342 232 FEEYLRKLCRL-GKPVYVIEYALDPTDPRESRLEDLF 267 (300)
T ss_pred HHHHHHHHHhc-CCcEEEEEecCCCCchhhHHHHHHH
Confidence 34566777765 9999999999999887776777664
No 198
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=26.42 E-value=99 Score=24.83 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=11.9
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
.++|+++|+-||-
T Consensus 99 ~~rPvi~wlNGGP 111 (498)
T COG2939 99 ANRPVIFWLNGGP 111 (498)
T ss_pred CCCceEEEecCCC
Confidence 7899999999995
No 199
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=22 Score=23.51 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=8.5
Q ss_pred EeCCeeEeeCC
Q 042985 70 VHGGALILLSA 80 (122)
Q Consensus 70 iHGGg~~~g~~ 80 (122)
||||-|+.|-+
T Consensus 163 ihGGFWvK~vr 173 (179)
T COG4843 163 IHGGFWVKGVR 173 (179)
T ss_pred eecceehHHHH
Confidence 89999986543
No 200
>PF02342 TerD: TerD domain; InterPro: IPR003325 This domain is found in tellurite resistance proteins, cAMP binding protein, and chemical-damaging agent resistance proteins and general stress proteins. Tellurium compounds are used in several industrial processes, although they are relatively rare in the environment. Genes associated with tellurite resistance (TeR) are found in many pathogenic bacteria []. The cellular Slime mould, Dictyostelium discoideum, contains a cAMP-binding protein, CABP1, which is composed of two subunits. The C-terminal half of these subunits contain this domain [].; GO: 0006950 response to stress; PDB: 2QNG_A 2QZ7_A 2KXV_A 2KXT_A 3IBZ_A.
Probab=26.14 E-value=43 Score=22.46 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=19.8
Q ss_pred EEEeCCeeEeeCCCchhhHHHHHHHHhcCCcE
Q 042985 68 VYVHGGALILLSAATKIYHDLCSDIAARVPAV 99 (122)
Q Consensus 68 v~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~ 99 (122)
+|-|+|+|........ +..-+..++...|+.
T Consensus 155 lyr~~~~W~~~avg~g-~~~gl~~l~~~~G~~ 185 (186)
T PF02342_consen 155 LYRRGGGWKFRAVGQG-FNGGLAALARDYGVE 185 (186)
T ss_dssp EEEETTCEEEEEEEEE-ETSHHHHHHHHTTS-
T ss_pred EEEcCCeEEEEEEEEe-ccCCHHHHHHHcCCC
Confidence 8999999987655442 234455666666654
No 201
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=25.87 E-value=1.1e+02 Score=20.88 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=25.1
Q ss_pred ccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 64 LPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
.++||++|-+.|.-..... ..+......+.. .|+.++.++.-
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D 68 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVD 68 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECC
Confidence 5789999999997544432 112233334443 47777776544
No 202
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=25.84 E-value=55 Score=24.45 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=14.7
Q ss_pred EEEEeCCeeEeeCCCchhhHHHHHH
Q 042985 67 IVYVHGGALILLSAATKIYHDLCSD 91 (122)
Q Consensus 67 vv~iHGGg~~~g~~~~~~~~~~~~~ 91 (122)
.|.+|||++.........|...++.
T Consensus 2 ~iiVHgGAG~~~~~~~~~~~~~l~~ 26 (303)
T cd04514 2 FVAVHAGAGYHSHSNEKEYKEACKR 26 (303)
T ss_pred eEEEEcCCCCCchhhHHHHHHHHHH
Confidence 4789999986554433334444443
No 203
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=1.3e+02 Score=20.22 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=25.3
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEc
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~ 104 (122)
..+||+||+-..|.-|.... -.+......+- +.|+.|+.|.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~-~~~a~V~GIS 71 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFE-KLGAVVLGIS 71 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHH-hCCCEEEEEe
Confidence 34899999999998664432 11233333343 4588887763
No 204
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=25.41 E-value=60 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.0
Q ss_pred CCccEEEEEeCCeeEeeCCCch
Q 042985 62 TKLPLIVYVHGGALILLSAATK 83 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~ 83 (122)
..-|-.+|+|-.||+.|++...
T Consensus 290 SgIpgc~FVH~SGFIGgn~T~E 311 (327)
T KOG2948|consen 290 SGIPGCIFVHASGFIGGNKTRE 311 (327)
T ss_pred cCCCCeEEEeecccccCcccHH
Confidence 3457889999999998888764
No 205
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=25.06 E-value=1.1e+02 Score=19.15 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=23.3
Q ss_pred ccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcC
Q 042985 64 LPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 64 ~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
.++||++..+.|+-..... .....+...+.. .|+.++++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~ 70 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISV 70 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecC
Confidence 6788888877887544322 112223333332 3788877764
No 206
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=24.85 E-value=1.2e+02 Score=17.63 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcCCcEEE---EEcCCCCCCCCCCchhhhhh
Q 042985 85 YHDLCSDIAARVPAVIV---SVDYRLAPEHRLPAAYYDAL 121 (122)
Q Consensus 85 ~~~~~~~la~~~g~~vv---~v~YRlaPe~~~P~~~~D~~ 121 (122)
....+.+++.+.|+.++ ..||++--...|...++|++
T Consensus 12 L~~~L~~Wa~~aGw~l~W~~~~dy~i~~~~~~~gsf~~Av 51 (84)
T PF10671_consen 12 LREALERWAKQAGWTLVWDAPKDYPIDAPATFSGSFEDAV 51 (84)
T ss_dssp HHHHHHHHHHCTT-EEEE-SSS--B--CCCCC-E-HHHHH
T ss_pred HHHHHHHHHHHCCCEEEecCCCCEEecCceEecCcHHHHH
Confidence 57788899999998875 34677766777777666653
No 207
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=24.85 E-value=1.2e+02 Score=18.76 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+.+++||++..+.|.-..... ..+..+...+.. .|+.++.+..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~ 65 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSP 65 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 346788888877776433322 222333344433 3788887764
No 208
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=24.48 E-value=1.3e+02 Score=21.82 Aligned_cols=44 Identities=2% Similarity=-0.041 Sum_probs=27.7
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
..++|+++|=+.|....... ..+......+.. .|+.|+.+..-.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~-~gv~VigIS~Ds 142 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE-RGVKVLGVSVDS 142 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 35899999999998665543 222333444443 478877776543
No 209
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=68 Score=21.44 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=14.8
Q ss_pred EEEeeCCCCCCCCCCCccEEEEEeC
Q 042985 48 RIFLPRQALDSSTKTKLPLIVYVHG 72 (122)
Q Consensus 48 ~iy~P~~~~~~~~~~~~pvvv~iHG 72 (122)
-||.|++.. -+.-.|+|-||
T Consensus 31 PiYlPAde~-----vpyhri~FA~G 50 (180)
T COG3101 31 PIYLPADEE-----VPYHRIVFAHG 50 (180)
T ss_pred ceeccCccC-----CCceeEEEech
Confidence 368898764 56678888887
No 210
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.22 E-value=44 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=10.7
Q ss_pred EEEEEeCCeeEeeCCC
Q 042985 66 LIVYVHGGALILLSAA 81 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~ 81 (122)
.+|++||||=. |+.-
T Consensus 88 ~~i~~~GGGNl-GDLy 102 (339)
T COG5039 88 DIIFFTGGGNL-GDLY 102 (339)
T ss_pred ceEEEeCCCch-hhcc
Confidence 69999999843 4443
No 211
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=24.18 E-value=82 Score=20.73 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCcEEEEEc
Q 042985 86 HDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~ 104 (122)
..+++.|+.+.|+..++.+
T Consensus 13 st~a~~la~~~~~~~is~~ 31 (183)
T TIGR01359 13 GTQCAKIVENFGFTHLSAG 31 (183)
T ss_pred HHHHHHHHHHcCCeEEECC
Confidence 3567889999999998874
No 212
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=23.97 E-value=79 Score=21.25 Aligned_cols=8 Identities=13% Similarity=0.604 Sum_probs=5.2
Q ss_pred hHHHHHHH
Q 042985 85 YHDLCSDI 92 (122)
Q Consensus 85 ~~~~~~~l 92 (122)
|++++..+
T Consensus 140 YDR~L~~~ 147 (181)
T TIGR02727 140 YDRFLANL 147 (181)
T ss_pred HHHHHHhc
Confidence 67766654
No 213
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=23.67 E-value=69 Score=18.14 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=13.3
Q ss_pred CCccEEEEEeCCeeEe
Q 042985 62 TKLPLIVYVHGGALIL 77 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~ 77 (122)
.+.|.|.|+|.|.-+.
T Consensus 10 ~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 10 IPPPKIFWKRNNEMVQ 25 (75)
T ss_pred cCCCeEEEEECCEECc
Confidence 6889999999987553
No 214
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=23.60 E-value=2.6e+02 Score=20.32 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=28.7
Q ss_pred cEEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEE--cCCCCCCCCCCchhh
Q 042985 65 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSV--DYRLAPEHRLPAAYY 118 (122)
Q Consensus 65 pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v--~YRlaPe~~~P~~~~ 118 (122)
--+|||+.|. ..........+..++.+.|+.|+.+ |=...|+ ||...-
T Consensus 152 ~gL~fFy~~~----C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~--fp~~~~ 201 (256)
T TIGR02739 152 YGLFFFYRGK----SPISQKMAPVIQAFAKEYGISVIPISVDGTLIPG--LPNSRS 201 (256)
T ss_pred eeEEEEECCC----CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC--CCCccC
Confidence 4566666654 2333335677888999999887555 4444444 555443
No 215
>PF03283 PAE: Pectinacetylesterase
Probab=23.44 E-value=72 Score=24.33 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.3
Q ss_pred CCccEEEEEeCCeeEee
Q 042985 62 TKLPLIVYVHGGALILL 78 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g 78 (122)
....+|||+-||||...
T Consensus 48 ~s~~~li~leGGG~C~~ 64 (361)
T PF03283_consen 48 GSNKWLIFLEGGGWCWD 64 (361)
T ss_pred CCceEEEEeccchhcCC
Confidence 55679999999999854
No 216
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=22.98 E-value=1e+02 Score=16.21 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCcEEEEEcCC
Q 042985 86 HDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 86 ~~~~~~la~~~g~~vv~v~YR 106 (122)
..+-.++....|+.|+.+.|-
T Consensus 20 t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 20 TKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHHHHHHCCCEEEEecHH
Confidence 344556677789999999763
No 217
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=22.93 E-value=4.6e+02 Score=22.08 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCceEEeeEEecCCCC--EEEEEEeeCCCCCCCCCCCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhc
Q 042985 18 PSTAATPDPNDHTIAVSKDVPVNQSNK--TWVRIFLPRQALDSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAAR 95 (122)
Q Consensus 18 ~~~~~~~~p~~~~~v~~~~v~~~~~~~--~~~~iy~P~~~~~~~~~~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~ 95 (122)
..++...+|. ...++.+-....++ +.+.++.-+...-. .+.|+++|-.|-.= ......+....-.|..+
T Consensus 406 qeV~~g~dp~---~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~---g~~p~lLygYGaYG---~s~~p~Fs~~~lSLlDR 476 (682)
T COG1770 406 QEVPGGFDPE---DYVSRRIWATADDGVQVPVSLVYRKDTKLD---GSAPLLLYGYGAYG---ISMDPSFSIARLSLLDR 476 (682)
T ss_pred ccCCCCCChh---HeEEEEEEEEcCCCcEeeEEEEEecccCCC---CCCcEEEEEecccc---ccCCcCcccceeeeecC
Confidence 3444434443 24555565554555 56666655442222 78899999988753 33333244444455555
Q ss_pred CCcEEEEEcCCCC
Q 042985 96 VPAVIVSVDYRLA 108 (122)
Q Consensus 96 ~g~~vv~v~YRla 108 (122)
|++.....-|=+
T Consensus 477 -GfiyAIAHVRGG 488 (682)
T COG1770 477 -GFVYAIAHVRGG 488 (682)
T ss_pred -ceEEEEEEeecc
Confidence 888766655543
No 218
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=22.69 E-value=48 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=9.5
Q ss_pred CCeeEeeCCCc
Q 042985 72 GGALILLSAAT 82 (122)
Q Consensus 72 GGg~~~g~~~~ 82 (122)
||||..|....
T Consensus 93 GGG~l~Ga~AQ 103 (266)
T TIGR02452 93 GGGFLNGAQAQ 103 (266)
T ss_pred CCCcccCccch
Confidence 99999987766
No 219
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=22.67 E-value=78 Score=19.10 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 105 (122)
+..|+||++..+.|....... .....+...+. +.|+.++.+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~-~~~~~vi~is~ 67 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYK-DKGVQVIGIST 67 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH-TTTEEEEEEES
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhc-cceEEeeeccc
Confidence 457999999888776444432 11122222333 34888888765
No 220
>KOG4060 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=1.2e+02 Score=20.49 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=33.7
Q ss_pred EEEEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCCCCC
Q 042985 66 LIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPE 110 (122)
Q Consensus 66 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlaPe 110 (122)
-++.+|=-|+-++..+. |..++-.+|+..++.|.. .|-+.++
T Consensus 53 ~~lNV~i~gyD~~~lEs--Yq~yvH~la~~l~~~V~d-sYA~p~q 94 (176)
T KOG4060|consen 53 GVLNVHITGYDMTLLES--YQQYVHNLANSLSIKVED-SYAMPTQ 94 (176)
T ss_pred ceEEEEEEecccchHHH--HHHHHHHHHHHcCceeEe-eeccCcc
Confidence 35888888888888877 889999999998988764 4777765
No 221
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.37 E-value=60 Score=19.77 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=24.3
Q ss_pred CCccEEEEEeCCeeEeeCCCc--hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAAT--KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~--~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+.++++||||+-....+.... ..-...+..+..+ .++.+.++-.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~ 61 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID 61 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC
Confidence 578999999997643222211 0012334444444 6777776654
No 222
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=22.21 E-value=1.7e+02 Score=19.46 Aligned_cols=40 Identities=10% Similarity=-0.057 Sum_probs=25.5
Q ss_pred ccEEEEEeCC-eeEeeCCCchhhHHHHHHHHhcCCcEEEEEc
Q 042985 64 LPLIVYVHGG-ALILLSAATKIYHDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 64 ~pvvv~iHGG-g~~~g~~~~~~~~~~~~~la~~~g~~vv~v~ 104 (122)
.--+|++.|| .+............+++.+... |-.|.++.
T Consensus 66 ~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~-~k~vaaIC 106 (188)
T COG0693 66 DYDALVIPGGDHGPEYLRPDPDLLAFVRDFYAN-GKPVAAIC 106 (188)
T ss_pred HCCEEEECCCccchhhccCcHHHHHHHHHHHHc-CCEEEEEC
Confidence 4568899999 6655544433356677777776 65665554
No 223
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=21.63 E-value=1e+02 Score=22.61 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHHhcC------CcEEEEEcC
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIAARV------PAVIVSVDY 105 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~------g~~vv~v~Y 105 (122)
...|++++-||-+...+.... +....+++.+++ .++|++.-|
T Consensus 7 ~~~p~LflshgsP~~~~~~n~--~~~~l~~lG~~~~e~rp~tIiV~SaHw 54 (268)
T COG3384 7 TMMPALFLSHGSPMLALEDNA--ATRGLRELGRELPELRPDTIIVFSAHW 54 (268)
T ss_pred hhccceeecCCCcccccCccH--HHHHHHHHHHhhhhcCCCEEEEEeceE
Confidence 456899999999999887765 444444444433 356666654
No 224
>PRK04940 hypothetical protein; Provisional
Probab=21.62 E-value=43 Score=22.99 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=5.4
Q ss_pred EEEEEeC
Q 042985 66 LIVYVHG 72 (122)
Q Consensus 66 vvv~iHG 72 (122)
.|+|+||
T Consensus 1 ~IlYlHG 7 (180)
T PRK04940 1 MIIYLHG 7 (180)
T ss_pred CEEEeCC
Confidence 3788897
No 225
>KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.50 E-value=74 Score=23.60 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=11.7
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
.+.|+.+.||||.
T Consensus 255 ~~KpvFlVfHGgS 267 (358)
T KOG4153|consen 255 SKKPVFLVFHGGS 267 (358)
T ss_pred ccCceEEEEeCCC
Confidence 6789999999995
No 226
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=21.23 E-value=53 Score=16.56 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=4.9
Q ss_pred EEEEeCCeeE
Q 042985 67 IVYVHGGALI 76 (122)
Q Consensus 67 vv~iHGGg~~ 76 (122)
-||++||--.
T Consensus 14 ~i~v~GG~~~ 23 (49)
T PF13418_consen 14 SIYVFGGRDS 23 (49)
T ss_dssp EEEEE--EEE
T ss_pred eEEEECCCCC
Confidence 3777888543
No 227
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=21.17 E-value=1.8e+02 Score=19.81 Aligned_cols=43 Identities=2% Similarity=0.086 Sum_probs=26.5
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..++||+||-+.|....... ..+..+..++.. .|+.|+.++..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d 79 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMD 79 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 34789999998887655543 112334444444 38888777654
No 228
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=21.07 E-value=1.1e+02 Score=22.05 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=16.6
Q ss_pred CCccEEEEEeCCeeEeeCCCchhhHHHHHHHH
Q 042985 62 TKLPLIVYVHGGALILLSAATKIYHDLCSDIA 93 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~~~~~~~~~~la 93 (122)
...-..|||||-| |+..+ +..++..+.
T Consensus 9 ~~~tPTifihG~~---gt~~s--~~~mi~~~~ 35 (255)
T PF06028_consen 9 QSTTPTIFIHGYG---GTANS--FNHMINRLE 35 (255)
T ss_dssp -S-EEEEEE--TT---GGCCC--CHHHHHHHH
T ss_pred cCCCcEEEECCCC---CChhH--HHHHHHHHH
Confidence 3445678999976 55555 678888887
No 229
>PRK13599 putative peroxiredoxin; Provisional
Probab=20.98 E-value=1.8e+02 Score=20.33 Aligned_cols=43 Identities=5% Similarity=0.161 Sum_probs=25.8
Q ss_pred CccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 63 KLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 63 ~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
..++|||+|=+.|.-..... ..+.....++.. .|+.++.++-.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D 71 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKE-LNTELIGLSVD 71 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 34788999999998554432 112333344443 37777777644
No 230
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=20.89 E-value=49 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.0
Q ss_pred ccEEEEE-eCCee
Q 042985 64 LPLIVYV-HGGAL 75 (122)
Q Consensus 64 ~pvvv~i-HGGg~ 75 (122)
.-+.||+ ||||=
T Consensus 309 ~dlf~Y~GHG~G~ 321 (383)
T PF03568_consen 309 SDLFLYCGHGSGE 321 (383)
T ss_pred CCeEEEecCCcHH
Confidence 4477888 99984
No 231
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.57 E-value=1.9e+02 Score=16.80 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=9.8
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
+..+++||.++|+
T Consensus 60 ~~~~ivv~C~~G~ 72 (100)
T cd01523 60 DDQEVTVICAKEG 72 (100)
T ss_pred CCCeEEEEcCCCC
Confidence 5568999988774
No 232
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=20.56 E-value=99 Score=22.59 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.6
Q ss_pred EEEEeCCeeEeeCC
Q 042985 67 IVYVHGGALILLSA 80 (122)
Q Consensus 67 vv~iHGGg~~~g~~ 80 (122)
+|.+|||++.....
T Consensus 2 ~livHgGAG~~~~~ 15 (260)
T cd04701 2 ALAIHGGAGNIPRD 15 (260)
T ss_pred EEEEEeCCCCCccc
Confidence 58899999876544
No 233
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=20.49 E-value=54 Score=25.63 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.6
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
...|=++|+|||=
T Consensus 360 dgppEllF~HgGH 372 (422)
T KOG0264|consen 360 DGPPELLFIHGGH 372 (422)
T ss_pred cCCcceeEEecCc
Confidence 4568899999993
No 234
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=20.39 E-value=1.8e+02 Score=22.73 Aligned_cols=32 Identities=22% Similarity=0.099 Sum_probs=20.0
Q ss_pred EEEeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEc
Q 042985 68 VYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVD 104 (122)
Q Consensus 68 v~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~ 104 (122)
|.|-|||-. |+.. ..++.+.+.+.|+.|+.++
T Consensus 89 VvIIGGG~~-GsS~----AfWLKer~rd~gl~VvVVE 120 (509)
T KOG2853|consen 89 VVIIGGGGS-GSST----AFWLKERARDEGLNVVVVE 120 (509)
T ss_pred EEEECCCcc-chhh----HHHHHHHhhcCCceEEEEe
Confidence 445566543 2222 3466888888888888775
No 235
>PF13854 Kelch_5: Kelch motif
Probab=20.33 E-value=64 Score=15.98 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=5.7
Q ss_pred EEEeCCee
Q 042985 68 VYVHGGAL 75 (122)
Q Consensus 68 v~iHGGg~ 75 (122)
+|+.||--
T Consensus 17 iyi~GG~~ 24 (42)
T PF13854_consen 17 IYIFGGYS 24 (42)
T ss_pred EEEEcCcc
Confidence 77888853
No 236
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=20.24 E-value=4.6e+02 Score=21.54 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCEEEEEEeeCCCCCCCCCCCccEEEE---EeCCeeEeeCCCchhhHHHHHHHHhcCCcEEEEEcCCC
Q 042985 43 NKTWVRIFLPRQALDSSTKTKLPLIVY---VHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRL 107 (122)
Q Consensus 43 ~~~~~~iy~P~~~~~~~~~~~~pvvv~---iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 107 (122)
+-+.+.-|.|.+... .+.|++|. |+ ..|+.- -.- ..++++.+..+ |+.|+.+++|-
T Consensus 199 ~l~eLiqY~P~te~v----~~~PLLIVPp~IN-K~YIlD-L~P--~~SlVr~lv~q-G~~VflIsW~n 257 (560)
T TIGR01839 199 EVLELIQYKPITEQQ----HARPLLVVPPQIN-KFYIFD-LSP--EKSFVQYCLKN-QLQVFIISWRN 257 (560)
T ss_pred CceEEEEeCCCCCCc----CCCcEEEechhhh-hhheee-cCC--cchHHHHHHHc-CCeEEEEeCCC
Confidence 447888898876532 55666653 21 223321 111 25778888876 99999999997
No 237
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.13 E-value=1.3e+02 Score=18.70 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCeeEeeCCCc-hhhHHHHHHHHhcCCcEEEEEcCC
Q 042985 62 TKLPLIVYVHGGALILLSAAT-KIYHDLCSDIAARVPAVIVSVDYR 106 (122)
Q Consensus 62 ~~~pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YR 106 (122)
+..+++|++.-+.|+-..... .....+...+.. .|+.++.+...
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~ 66 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPE 66 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCC
Confidence 346788888888787544432 111222223322 47888887643
No 238
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=20.09 E-value=1.6e+02 Score=17.20 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.9
Q ss_pred CCccEEEEEeCCe
Q 042985 62 TKLPLIVYVHGGA 74 (122)
Q Consensus 62 ~~~pvvv~iHGGg 74 (122)
+..++|||..+|.
T Consensus 60 ~~~~ivvyC~~G~ 72 (101)
T cd01518 60 KGKKVLMYCTGGI 72 (101)
T ss_pred CCCEEEEECCCch
Confidence 5668999988774
Done!