BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042986
(1485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 31/162 (19%)
Query: 1191 LEFLEIHSCPSLTCLISKNELPGAL-------DHLVVGNLPQALKFLSIWHCSR-LESIV 1242
L L I +CP LT ELP L +H + NL Q+L+ W R L + +
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNL-QSLRL--EWTGIRSLPASI 202
Query: 1243 ERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE--GGLLSAKLK 1300
L N SL++ L L +H L +L+E+D+ GC L ++P GG A LK
Sbjct: 203 ANLQNLKSLKI----RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLK 256
Query: 1301 RLVIGGCKKLEALPLGMHHLTCLQHLTIGG------VPSLLC 1336
RL++ C L LPL +H LT L+ L + G +PSL+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 1099 LVSFPD-AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLP 1157
L FPD A S L+ +I D L LPD + LE L + A +
Sbjct: 93 LPQFPDQAFRLSHLQHXTI-DAAGLXELPD--TXQQFAGLETLTLARNPLRALPASIASL 149
Query: 1158 PSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSL-------LEFLEIHSCPS-------LT 1203
L++L I +C + L ++S H L LE+ I S P+ L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 1204 CLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLK 1263
L +N AL + +LP+ L+ L + C+ L + L+ + + C NL
Sbjct: 210 SLKIRNSPLSALGP-AIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 1264 ILPHGLHKLWRLQEIDIHGCENLVSFP 1290
LP +H+L +L+++D+ GC NL P
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 641 LPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700
LP SI NL+NL+ L + + + L +I+ L L L GC L+ G L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 701 LKNSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENV 759
L D +L +PL I +LT L L LRG +N+S+L ++
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKL--------------------DLRGCVNLSRLPSL 296
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLE 680
+ F+L L+ ++ ELPD+ L L L+ ++ LP SI L L +
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 681 GCWRLKKLCADMGN---------LIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVG 731
C L +L + + L+ L L+ T + +P I L L++L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL------ 211
Query: 732 KDSGSRLRELKPLMH 746
K S L L P +H
Sbjct: 212 KIRNSPLSALGPAIH 226
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 61/259 (23%)
Query: 630 VFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLC 689
LR P+ PD L +L++ + + LP++ + L T L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLA--------- 135
Query: 690 ADMGNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRG 749
+ L +P I L +RLREL +R
Sbjct: 136 ----------------RNPLRALPASIASL----------------NRLRELS----IRA 159
Query: 750 TLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQWT------CSIDSLSS-REAETEKTVL 802
+++L DA + G NL+ L L+WT SI +L + + + + L
Sbjct: 160 CPELTELPEPLASTDA-SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 803 EMLKPH----KNLEQICISGFRGTK-FPTWLGCSFFSNLVTLKFQDCSMCTSVP-SVGQL 856
L P LE++ + G + +P G + L L +DCS ++P + +L
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKDCSNLLTLPLDIHRL 276
Query: 857 PSLKHLEVCGMSRVKRLGS 875
L+ L++ G + RL S
Sbjct: 277 TQLEKLDLRGCVNLSRLPS 295
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 57/243 (23%)
Query: 323 LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVA-AIMGTVPAYQL------- 374
LL+LDDVW+ WV +A +I++TTR++ V ++MG P Y +
Sbjct: 239 LLILDDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLG 287
Query: 375 --KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYS 432
K L I LS+F L E I+ +C G PL +G LLR +
Sbjct: 288 KEKGLEI---LSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN 336
Query: 433 QCEW----------EGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKD 482
+ E+ + + S +D E D A+ +S L +K + S+ KD
Sbjct: 337 RWEYYLKQLQNKQFKRIRKSSSYDY--EALD--EAMSISVEMLREDIKDYYTDLSILQKD 392
Query: 483 YEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSRFVMHDLI 542
+ + + +LW D E E ED+ +F ++ F + + R+ +HDL
Sbjct: 393 VKVPTKVLCILW------DMETEE--VEDILQEF---VNKSLLFCDRNGKSFRYYLHDLQ 441
Query: 543 NDL 545
D
Sbjct: 442 VDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 57/243 (23%)
Query: 323 LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVA-AIMGTVPAYQL------- 374
LL+LDDVW+ WV +A +I++TTR++ V ++MG P Y +
Sbjct: 245 LLILDDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLG 293
Query: 375 --KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYS 432
K L I LS+F L E I+ +C G PL +G LLR +
Sbjct: 294 KEKGLEI---LSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN 342
Query: 433 QCEW----------EGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKD 482
+ E+ + + S +D + A+ +S L +K + S+ KD
Sbjct: 343 RWEYYLKQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKD 398
Query: 483 YEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSRFVMHDLI 542
+ + + +LW D E E ED+ +F ++ F + + R+ +HDL
Sbjct: 399 VKVPTKVLCILW------DMETEE--VEDILQEF---VNKSLLFCDRNGKSFRYYLHDLQ 447
Query: 543 NDL 545
D
Sbjct: 448 VDF 450
>pdb|2X63|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii N51a In
Complex With Cmp
Length = 258
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 38 YYLGKKCKAVFYAPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDY 97
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 98 FPDAHLGYDFFKQL 111
>pdb|2WQQ|A Chain A, Crystallographic Analysis Of Monomeric Cstii
Length = 291
Score = 37.4 bits (85), Expect = 0.060, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDY 98
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 99 FPDAHLGYDFFKQL 112
>pdb|2X61|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
pdb|2X61|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
Length = 258
Score = 37.4 bits (85), Expect = 0.061, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDY 98
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 99 FPDAHLGYDFFKQL 112
>pdb|2DRJ|A Chain A, Xray Structure Of Alpha-2,38-Sialyltransferase Cstii F91y
Mutant
Length = 262
Score = 37.4 bits (85), Expect = 0.061, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 42 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENYVKTFYDY 101
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 102 FPDAHLGYDFFKQL 115
>pdb|2X62|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
pdb|2X62|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
Length = 259
Score = 37.4 bits (85), Expect = 0.063, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNFNQAHLENENFVKTFYDY 98
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 99 FPDAHLGYDFFKQL 112
>pdb|1RO7|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|C Chain C, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|D Chain D, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac
Length = 259
Score = 37.4 bits (85), Expect = 0.072, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDY 98
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 99 FPDAHLGYDFFKQL 112
>pdb|1RO8|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
pdb|1RO8|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
Length = 262
Score = 37.0 bits (84), Expect = 0.073, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 463 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIVLLWCASGFLDHEENEN-------- 507
YYL K F SLF + Y + +E E L+ C++ H ENEN
Sbjct: 42 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDY 101
Query: 508 -PSEDLGHDFFKEL 520
P LG+DFFK+L
Sbjct: 102 FPDAHLGYDFFKQL 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 617 SILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHT 676
+I +FK L L G ELP I NL NLR L+LS + +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 677 FLLEGCWRLKKLCADMGNLIKLHHL 701
F + L + GNL L L
Sbjct: 298 FYFFDN-MVTTLPWEFGNLCNLQFL 321
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 55/242 (22%)
Query: 323 LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVA-AIMG---TVPAY----QL 374
LL+LDDVW+ WV +A +I++TTR++ V ++MG VP +
Sbjct: 239 LLILDDVWDP----WV-----LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 375 KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRG----- 429
K L I LS+F + L I+ +C G PL +G LLR
Sbjct: 290 KGLEI---LSLFVN--------MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRW 338
Query: 430 -----KYSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYE 484
+ +++ + S +D + A+ +S L +K + S+ KD +
Sbjct: 339 AYYLRQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVK 394
Query: 485 FEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSR-FVMHDLIN 543
+ + +LW L+ EE E D +E ++S + N S + +HDL
Sbjct: 395 VPTKVLCVLW----DLETEEVE--------DILQEFVNKSLLFCNRNGKSFCYYLHDLQV 442
Query: 544 DL 545
D
Sbjct: 443 DF 444
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 608 NSSLGYLARSILPKLFKLQRLRVFSLRG--YHNPELPDSIGNLRNLRYLNLSGTNIKTLP 665
N L + + L KL +R+ Y NPE + NL NL+YL +S T IK LP
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGIKHLP 120
Query: 666 ESINKLYNLHTFLLE 680
+ ++K+++L LL+
Sbjct: 121 D-VHKIHSLQKVLLD 134
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 571 RNLRHLSYICGEYDGVQR-----FGKLYDIRHLRTFLPIMLSNSSLGYLARSILPKLFKL 625
RN L ++ + +Q+ FG L I + N L + + L KL
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIE--------ISQNDVLEVIEADVFSNLPKL 81
Query: 626 QRLRVFSLRG--YHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLE 680
+R+ Y NPE + NL NL+YL +S T IK LP+ ++K+++L LL+
Sbjct: 82 HEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLD 134
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 55/242 (22%)
Query: 323 LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVA-AIMG---TVPAY----QL 374
LL+LDDVW+ WV +A +I++TT ++ V ++MG VP +
Sbjct: 246 LLILDDVWDP----WV-----LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 375 KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRG----- 429
K L I LS+F + L I+ +C G PL +G LLR
Sbjct: 297 KGLEI---LSLFVN--------MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRW 345
Query: 430 -----KYSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYE 484
+ +++ + S +D + A+ +S L +K + S+ KD +
Sbjct: 346 AYYLRQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVK 401
Query: 485 FEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSR-FVMHDLIN 543
+ + +LW L+ EE E D +E ++S + N S + +HDL
Sbjct: 402 VPTKVLCVLW----DLETEEVE--------DILQEFVNKSLLFCNRNGKSFCYYLHDLQV 449
Query: 544 DL 545
D
Sbjct: 450 DF 451
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 642 PDSIGNLRNLRYLNLSGTNIKTLPESI--------------NKLYNLHTFLLEGCWRLKK 687
P + NL NLR L L +K +P + NK+ L ++ + + LK
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 688 LCADMGNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRT 724
L +L+ + H S +SLE++ L LT + T
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 595 IRHLRTFLPIMLSNSSLGYLARSILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYL 654
+RHL + LS + + + S+L +L +LQ +++ G P + L LR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 655 NLSGTNIKTLPESI-NKLYNLHTFLLE 680
N+SG + TL ES+ + + NL T +L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 590 GKLYDI---RHLRTFLPIMLSNSSLGYLARSILPKLFKLQRLRVFSLRGYHNPELPDSI- 645
KL+DI + L ++L+ + L L + KL L+ L + + LPD +
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ---SLPDGVF 129
Query: 646 GNLRNLRYLNLSGTNIKTLPESI-NKLYNL 674
L NL YLNL+ +++LP+ + +KL NL
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 596 RHLRTFLPIMLSNSSLGYLARSILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLN 655
R LR I LS + L+ S + LQRL + + + P LRNL L+
Sbjct: 427 RGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILD 486
Query: 656 LSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLH---------------- 699
LS NI + E LLEG L+ L NL +L
Sbjct: 487 LSNNNIANINED----------LLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Query: 700 --HLKNSDTDSLEEMPLGIGK 718
H+ N +++ L+E+P+G+ K
Sbjct: 537 HLHILNLESNGLDEIPVGVFK 557
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As Deduced
From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 1244 RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDI-----HGCENLVSFPEG 1292
R D +T LE +VS E + +LP GL +E DI +G EN+ FP G
Sbjct: 341 REDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNENGAENITKFPYG 394
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As Deduced
From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 1244 RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDI-----HGCENLVSFPEG 1292
R D +T LE +VS E + +LP GL +E DI +G EN+ FP G
Sbjct: 341 REDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNENGAENITKFPYG 394
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 231 LKDDLRNDGGFSVIPIIGMG--------GLGKTTLAQLVYNDKQVQY-----YFDLKAWT 277
++ D+ DG FS+ P + +G GLG TL +L Y+ + V Y + + + T
Sbjct: 1179 IRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIASVT 1238
Query: 278 CVSDDFDVIWLT 289
+ ++F V LT
Sbjct: 1239 DIPEEFHVSLLT 1250
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 899 EWEEWIPHGCSQEIEGF-PKLRELHIVR---CSKLQGTLPTHLPLL 940
++ +W HGC ++++GF L E+ VR S L+GT H P++
Sbjct: 211 QYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIV 256
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 554 YLRVEYTSEVNKQQRFSRNLRHLSYICGEYDGVQRFGKLYDIRHLRTFLPIMLSNSSLGY 613
YL + + + F L L ++ ++ +++ + LR + + +S++
Sbjct: 82 YLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 614 LARSILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTL-PESINKLY 672
I L L+ L++ + + LPD LRNL +L+LS ++ L P + N L
Sbjct: 141 AFNGIFNGLSSLEVLKM-AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 673 NLH 675
+L
Sbjct: 200 SLQ 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,463,350
Number of Sequences: 62578
Number of extensions: 1812098
Number of successful extensions: 4118
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4077
Number of HSP's gapped (non-prelim): 66
length of query: 1485
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1374
effective length of database: 8,027,179
effective search space: 11029343946
effective search space used: 11029343946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)