Query 042986
Match_columns 1485
No_of_seqs 796 out of 6283
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-84 5.6E-89 806.3 46.7 638 29-734 21-679 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-62 1.9E-66 645.4 54.7 471 211-718 181-679 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-41 2.6E-46 389.3 14.1 278 219-503 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 5.3E-36 1.2E-40 402.7 25.4 183 617-868 84-271 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.3E-35 2.7E-40 399.0 22.1 221 572-868 70-295 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 3.5E-28 7.5E-33 256.5 -15.3 151 1227-1384 390-541 (565)
7 KOG0618 Serine/threonine phosp 99.9 6.2E-26 1.3E-30 264.9 -6.4 266 1061-1381 240-510 (1081)
8 KOG0472 Leucine-rich repeat pr 99.9 7.2E-26 1.6E-30 239.1 -12.7 105 619-725 61-165 (565)
9 PLN03210 Resistant to P. syrin 99.9 2.4E-21 5.2E-26 259.0 24.0 363 1057-1462 553-944 (1153)
10 KOG4194 Membrane glycoprotein 99.9 3.7E-23 8E-28 228.5 5.3 272 1061-1382 77-352 (873)
11 KOG4194 Membrane glycoprotein 99.9 5.9E-23 1.3E-27 226.9 2.8 206 1194-1413 239-450 (873)
12 KOG0618 Serine/threonine phosp 99.9 7.7E-24 1.7E-28 247.6 -4.4 100 624-725 43-142 (1081)
13 KOG0444 Cytoskeletal regulator 99.9 7.2E-24 1.6E-28 234.9 -5.7 176 625-868 6-184 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 5.5E-22 1.2E-26 220.1 -5.8 129 571-707 55-184 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 2.6E-13 5.6E-18 167.1 15.5 79 626-714 201-279 (788)
16 KOG4237 Extracellular matrix p 99.5 3.5E-15 7.5E-20 159.1 -1.7 103 628-731 69-175 (498)
17 KOG4237 Extracellular matrix p 99.5 2E-15 4.2E-20 160.9 -4.1 405 809-1283 67-498 (498)
18 PRK15387 E3 ubiquitin-protein 99.4 8.7E-13 1.9E-17 162.6 14.8 257 1063-1384 202-458 (788)
19 KOG0617 Ras suppressor protein 99.3 4.9E-14 1.1E-18 132.3 -4.8 107 618-725 48-155 (264)
20 KOG0617 Ras suppressor protein 99.3 6.4E-14 1.4E-18 131.5 -4.9 105 620-725 27-132 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 7.9E-12 1.7E-16 155.7 10.9 83 626-716 178-260 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.2 5E-12 1.1E-16 159.9 4.8 235 624-874 543-787 (889)
23 PRK04841 transcriptional regul 99.2 6.9E-10 1.5E-14 149.5 25.0 275 240-550 31-332 (903)
24 PRK15370 E3 ubiquitin-protein 99.2 2.5E-11 5.4E-16 151.2 9.3 96 1061-1168 198-293 (754)
25 PRK00411 cdc6 cell division co 99.2 2.6E-09 5.6E-14 128.1 23.7 301 212-529 28-358 (394)
26 TIGR02928 orc1/cdc6 family rep 99.0 4.3E-08 9.2E-13 116.4 25.5 301 213-529 14-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.0 1.9E-08 4.1E-13 113.8 20.4 182 241-427 43-242 (269)
28 cd00116 LRR_RI Leucine-rich re 98.9 5.2E-11 1.1E-15 139.2 -3.2 87 1297-1383 193-290 (319)
29 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-10 2.7E-15 136.0 -1.3 58 1227-1284 167-232 (319)
30 PF01637 Arch_ATPase: Archaeal 98.9 3.9E-09 8.4E-14 117.1 7.6 195 216-422 1-233 (234)
31 PF05729 NACHT: NACHT domain 98.8 2.2E-08 4.7E-13 104.1 10.0 142 242-389 1-162 (166)
32 TIGR00635 ruvB Holliday juncti 98.8 2.6E-07 5.7E-12 106.4 19.2 277 214-530 4-290 (305)
33 PRK00080 ruvB Holliday junctio 98.8 1E-07 2.3E-12 110.1 15.7 277 214-530 25-311 (328)
34 PRK15386 type III secretion pr 98.7 6E-08 1.3E-12 109.6 10.9 64 1245-1314 48-111 (426)
35 COG2909 MalT ATP-dependent tra 98.7 7.5E-07 1.6E-11 106.8 19.3 287 224-549 25-337 (894)
36 PTZ00112 origin recognition co 98.6 1.5E-06 3.3E-11 104.8 20.1 300 213-530 754-1087(1164)
37 KOG0532 Leucine-rich repeat (L 98.6 3.5E-09 7.6E-14 119.3 -3.1 179 617-867 89-270 (722)
38 KOG4341 F-box protein containi 98.6 1.4E-09 3E-14 118.2 -6.8 281 1063-1382 139-437 (483)
39 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 112.0 -0.1 155 957-1146 119-282 (505)
40 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 4E-13 101.7 1.3 81 624-707 17-99 (175)
41 COG2256 MGS1 ATPase related to 98.5 7.1E-07 1.5E-11 97.9 13.2 170 213-417 29-206 (436)
42 KOG4341 F-box protein containi 98.5 1.3E-09 2.7E-14 118.5 -7.8 66 1110-1175 139-207 (483)
43 KOG0532 Leucine-rich repeat (L 98.5 7.7E-09 1.7E-13 116.6 -3.2 173 624-868 73-245 (722)
44 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 115.9 4.6 102 622-725 112-214 (394)
45 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.1E-13 109.5 0.1 156 1227-1383 148-313 (505)
46 COG3899 Predicted ATPase [Gene 98.4 2E-06 4.3E-11 110.4 15.9 288 215-526 1-354 (849)
47 PRK15386 type III secretion pr 98.4 7.7E-07 1.7E-11 100.8 10.5 132 1227-1381 54-187 (426)
48 PRK06893 DNA replication initi 98.4 1.3E-06 2.8E-11 94.9 11.1 151 242-423 40-203 (229)
49 PF14580 LRR_9: Leucine-rich r 98.4 2.4E-07 5.3E-12 93.6 4.9 106 624-732 40-152 (175)
50 PRK13342 recombination factor 98.4 5.5E-06 1.2E-10 98.8 17.0 176 214-423 12-196 (413)
51 PRK05564 DNA polymerase III su 98.3 1.6E-05 3.4E-10 91.4 17.0 178 214-421 4-188 (313)
52 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 3E-11 86.2 7.1 117 241-359 4-125 (131)
53 PF13855 LRR_8: Leucine rich r 98.3 6.7E-07 1.5E-11 73.9 3.8 57 626-682 1-59 (61)
54 KOG1259 Nischarin, modulator o 98.2 5.4E-07 1.2E-11 93.4 3.0 128 1226-1384 285-412 (490)
55 KOG1259 Nischarin, modulator o 98.2 2.1E-07 4.6E-12 96.4 -0.3 98 624-725 282-379 (490)
56 TIGR02903 spore_lon_C ATP-depe 98.2 2.1E-05 4.6E-10 97.6 17.0 203 214-426 154-398 (615)
57 PF13173 AAA_14: AAA domain 98.2 3.4E-06 7.4E-11 82.3 7.5 119 242-382 3-127 (128)
58 PRK14963 DNA polymerase III su 98.2 3.3E-06 7.3E-11 101.4 8.9 201 214-426 14-221 (504)
59 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.2E-05 2.5E-10 88.3 12.3 169 219-424 22-202 (226)
60 PRK09376 rho transcription ter 98.2 4.1E-06 9E-11 93.8 8.3 89 240-329 168-265 (416)
61 cd01128 rho_factor Transcripti 98.2 7.1E-06 1.5E-10 88.8 9.7 90 240-330 15-113 (249)
62 PF13191 AAA_16: AAA ATPase do 98.2 2E-06 4.2E-11 91.2 5.3 51 215-268 1-51 (185)
63 cd00009 AAA The AAA+ (ATPases 98.1 1.2E-05 2.5E-10 81.9 10.6 125 217-361 1-131 (151)
64 PRK14961 DNA polymerase III su 98.1 5.6E-05 1.2E-09 88.4 17.3 190 214-419 16-216 (363)
65 PRK12402 replication factor C 98.1 3.3E-05 7.1E-10 90.8 15.6 195 214-421 15-224 (337)
66 COG4886 Leucine-rich repeat (L 98.1 1.1E-06 2.4E-11 105.7 3.2 107 617-725 130-237 (394)
67 KOG2028 ATPase related to the 98.1 4.1E-05 8.9E-10 82.2 14.3 157 239-417 160-330 (554)
68 PRK04195 replication factor C 98.1 0.00017 3.7E-09 88.0 21.6 247 214-502 14-271 (482)
69 PTZ00202 tuzin; Provisional 98.1 9.4E-05 2E-09 83.2 16.6 168 210-389 258-433 (550)
70 PLN03025 replication factor C 98.1 3.5E-05 7.6E-10 88.7 14.0 179 214-417 13-194 (319)
71 KOG2120 SCF ubiquitin ligase, 98.1 6.8E-08 1.5E-12 100.2 -7.4 180 1062-1310 185-376 (419)
72 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.3E-11 69.7 3.8 58 649-707 1-60 (61)
73 PLN03150 hypothetical protein; 98.1 4.2E-06 9E-11 105.0 6.4 108 1227-1334 420-528 (623)
74 PRK07003 DNA polymerase III su 98.1 4.9E-05 1.1E-09 92.1 14.9 195 214-424 16-222 (830)
75 PRK14949 DNA polymerase III su 98.1 6.5E-05 1.4E-09 93.1 16.1 185 214-425 16-223 (944)
76 PLN03150 hypothetical protein; 98.1 3.7E-06 8E-11 105.5 5.6 93 627-719 419-513 (623)
77 PRK14960 DNA polymerase III su 98.0 7.7E-05 1.7E-09 89.5 15.9 191 214-420 15-216 (702)
78 PF05496 RuvB_N: Holliday junc 98.0 7.2E-05 1.6E-09 77.2 13.1 174 214-420 24-218 (233)
79 PRK00440 rfc replication facto 98.0 9.9E-05 2.2E-09 86.0 16.2 180 214-420 17-200 (319)
80 COG1474 CDC6 Cdc6-related prot 98.0 0.00023 4.9E-09 82.1 18.4 206 215-424 18-239 (366)
81 PRK14957 DNA polymerase III su 98.0 0.00012 2.6E-09 88.2 15.9 186 214-426 16-224 (546)
82 PRK08727 hypothetical protein; 98.0 9.6E-05 2.1E-09 80.5 13.7 148 242-420 42-201 (233)
83 PRK13341 recombination factor 98.0 4.7E-05 1E-09 95.3 12.7 168 214-417 28-211 (725)
84 KOG1909 Ran GTPase-activating 98.0 2.4E-07 5.3E-12 99.1 -6.3 140 1225-1383 157-310 (382)
85 PRK06645 DNA polymerase III su 97.9 0.00014 3E-09 87.1 15.9 192 214-418 21-224 (507)
86 PF12799 LRR_4: Leucine Rich r 97.9 7E-06 1.5E-10 61.6 3.1 39 627-665 2-40 (44)
87 PRK12323 DNA polymerase III su 97.9 0.00014 3.1E-09 87.0 15.4 194 214-421 16-223 (700)
88 PRK14956 DNA polymerase III su 97.9 4E-05 8.6E-10 89.5 10.0 192 214-417 18-216 (484)
89 PRK07940 DNA polymerase III su 97.9 0.00025 5.3E-09 82.7 16.5 191 214-423 5-213 (394)
90 PRK09087 hypothetical protein; 97.9 0.0001 2.3E-09 79.3 12.4 140 241-422 44-194 (226)
91 TIGR02397 dnaX_nterm DNA polym 97.9 0.00031 6.8E-09 83.1 17.5 181 214-422 14-217 (355)
92 TIGR00767 rho transcription te 97.9 5E-05 1.1E-09 85.9 9.9 89 240-329 167-264 (415)
93 PRK08691 DNA polymerase III su 97.9 0.00017 3.7E-09 87.6 14.6 191 214-420 16-217 (709)
94 PRK14964 DNA polymerase III su 97.8 0.00026 5.5E-09 84.1 15.1 179 214-419 13-213 (491)
95 COG3903 Predicted ATPase [Gene 97.8 2E-05 4.2E-10 87.8 5.4 270 240-529 13-292 (414)
96 PRK05896 DNA polymerase III su 97.8 0.00031 6.7E-09 84.6 15.8 196 214-425 16-223 (605)
97 PRK07994 DNA polymerase III su 97.8 0.00024 5.2E-09 87.0 14.9 194 214-423 16-221 (647)
98 PRK08084 DNA replication initi 97.8 0.00018 3.9E-09 78.5 12.7 151 241-422 45-208 (235)
99 PRK07471 DNA polymerase III su 97.8 0.00053 1.2E-08 79.3 17.1 196 213-423 18-238 (365)
100 KOG2227 Pre-initiation complex 97.8 0.00051 1.1E-08 77.3 16.0 214 212-427 148-376 (529)
101 TIGR00678 holB DNA polymerase 97.8 0.00035 7.5E-09 73.8 14.4 90 319-418 95-186 (188)
102 PRK14955 DNA polymerase III su 97.8 0.00013 2.8E-09 86.5 12.3 202 214-424 16-230 (397)
103 PRK11331 5-methylcytosine-spec 97.8 8.4E-05 1.8E-09 85.7 10.3 109 214-334 175-286 (459)
104 PRK09112 DNA polymerase III su 97.8 7.6E-05 1.7E-09 85.6 9.8 196 213-423 22-240 (351)
105 PRK14962 DNA polymerase III su 97.8 0.00031 6.7E-09 84.0 15.2 183 214-427 14-223 (472)
106 PRK14951 DNA polymerase III su 97.8 0.0004 8.6E-09 85.0 16.3 194 214-420 16-222 (618)
107 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.3E-10 59.1 3.0 40 649-689 1-40 (44)
108 PF00308 Bac_DnaA: Bacterial d 97.7 0.0002 4.3E-09 76.9 11.4 183 216-421 11-206 (219)
109 PRK14958 DNA polymerase III su 97.7 0.00046 1E-08 83.5 15.7 191 214-420 16-217 (509)
110 PF05621 TniB: Bacterial TniB 97.7 0.00056 1.2E-08 74.4 14.4 203 214-420 34-258 (302)
111 TIGR01242 26Sp45 26S proteasom 97.7 0.00018 3.8E-09 84.7 11.7 180 213-417 121-328 (364)
112 PRK05642 DNA replication initi 97.7 0.00036 7.7E-09 76.0 13.1 151 241-422 45-207 (234)
113 PRK09111 DNA polymerase III su 97.7 0.00064 1.4E-08 83.5 15.7 196 214-422 24-232 (598)
114 KOG0531 Protein phosphatase 1, 97.7 9.8E-06 2.1E-10 97.3 -0.1 102 620-725 89-191 (414)
115 PRK08903 DnaA regulatory inact 97.7 0.00048 1E-08 75.3 13.1 152 241-427 42-203 (227)
116 PRK14959 DNA polymerase III su 97.6 0.00088 1.9E-08 81.3 15.9 198 214-427 16-225 (624)
117 PRK14969 DNA polymerase III su 97.6 0.00079 1.7E-08 82.2 15.5 182 214-425 16-223 (527)
118 KOG1909 Ran GTPase-activating 97.6 1.2E-05 2.7E-10 86.4 -0.2 38 1247-1284 268-309 (382)
119 PRK14954 DNA polymerase III su 97.6 0.0011 2.4E-08 81.5 16.0 202 214-424 16-230 (620)
120 CHL00181 cbbX CbbX; Provisiona 97.6 0.0018 3.9E-08 72.6 16.4 134 242-391 60-210 (287)
121 KOG2120 SCF ubiquitin ligase, 97.6 1.5E-06 3.3E-11 90.4 -7.2 156 1226-1382 186-349 (419)
122 PRK14970 DNA polymerase III su 97.6 0.0011 2.4E-08 78.4 15.4 183 214-425 17-212 (367)
123 PRK14950 DNA polymerase III su 97.5 0.0008 1.7E-08 83.8 14.5 193 214-421 16-219 (585)
124 PRK07133 DNA polymerase III su 97.5 0.0021 4.5E-08 79.4 17.1 192 214-424 18-221 (725)
125 PF05673 DUF815: Protein of un 97.5 0.0012 2.7E-08 69.3 12.8 126 211-363 24-154 (249)
126 PF14516 AAA_35: AAA-like doma 97.5 0.0091 2E-07 68.9 21.4 201 213-430 10-246 (331)
127 KOG2543 Origin recognition com 97.5 0.0005 1.1E-08 75.4 10.2 167 213-389 5-192 (438)
128 TIGR02881 spore_V_K stage V sp 97.5 0.0011 2.4E-08 74.0 13.1 161 215-391 7-192 (261)
129 PRK14087 dnaA chromosomal repl 97.5 0.0016 3.5E-08 77.9 15.1 167 241-423 141-319 (450)
130 PRK06305 DNA polymerase III su 97.5 0.0016 3.4E-08 78.1 14.9 183 214-424 17-224 (451)
131 PRK14952 DNA polymerase III su 97.4 0.0027 5.8E-08 77.6 16.7 198 214-427 13-224 (584)
132 PRK14971 DNA polymerase III su 97.4 0.0028 6.1E-08 78.7 17.1 174 214-418 17-217 (614)
133 PRK07764 DNA polymerase III su 97.4 0.0023 5E-08 81.5 16.5 194 214-426 15-225 (824)
134 TIGR02880 cbbX_cfxQ probable R 97.4 0.0021 4.6E-08 72.1 14.6 132 243-390 60-208 (284)
135 KOG4579 Leucine-rich repeat (L 97.4 1.3E-05 2.9E-10 73.8 -2.5 90 623-714 50-140 (177)
136 KOG0989 Replication factor C, 97.4 0.00091 2E-08 71.3 10.3 182 214-416 36-223 (346)
137 KOG0531 Protein phosphatase 1, 97.4 2.6E-05 5.7E-10 93.6 -1.3 99 624-726 70-168 (414)
138 PRK14953 DNA polymerase III su 97.4 0.0053 1.2E-07 74.0 17.8 181 214-421 16-218 (486)
139 PRK14948 DNA polymerase III su 97.4 0.0041 8.9E-08 77.2 17.1 194 214-421 16-220 (620)
140 PRK08451 DNA polymerase III su 97.3 0.0048 1E-07 74.2 16.9 192 214-421 14-216 (535)
141 TIGR00362 DnaA chromosomal rep 97.3 0.0024 5.2E-08 76.5 14.6 159 241-419 136-306 (405)
142 KOG1859 Leucine-rich repeat pr 97.3 7.3E-06 1.6E-10 95.6 -6.5 61 651-714 166-226 (1096)
143 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0016 3.4E-08 84.3 13.3 155 214-389 187-362 (852)
144 TIGR02639 ClpA ATP-dependent C 97.3 0.0013 2.8E-08 84.6 12.6 156 214-390 182-358 (731)
145 KOG1859 Leucine-rich repeat pr 97.3 4.1E-06 8.9E-11 97.6 -8.9 126 1226-1358 165-292 (1096)
146 PRK03992 proteasome-activating 97.3 0.0013 2.7E-08 77.7 11.3 179 213-416 130-336 (389)
147 KOG4579 Leucine-rich repeat (L 97.3 4E-05 8.6E-10 70.8 -1.0 97 627-725 28-128 (177)
148 PRK06620 hypothetical protein; 97.3 0.0048 1E-07 65.9 14.3 134 242-419 45-185 (214)
149 KOG2982 Uncharacterized conser 97.3 6.9E-05 1.5E-09 78.5 0.2 208 1227-1441 47-265 (418)
150 PHA02544 44 clamp loader, smal 97.3 0.0017 3.8E-08 75.2 11.9 147 214-387 21-170 (316)
151 CHL00095 clpC Clp protease ATP 97.2 0.00097 2.1E-08 86.8 10.4 155 214-388 179-352 (821)
152 COG2255 RuvB Holliday junction 97.2 0.0071 1.5E-07 64.0 14.2 172 214-418 26-218 (332)
153 PRK14088 dnaA chromosomal repl 97.2 0.0033 7.1E-08 75.3 13.3 155 241-417 130-299 (440)
154 PRK14086 dnaA chromosomal repl 97.1 0.0053 1.2E-07 74.3 14.5 157 241-417 314-482 (617)
155 PRK06647 DNA polymerase III su 97.1 0.011 2.4E-07 72.6 17.3 191 214-420 16-217 (563)
156 PRK12422 chromosomal replicati 97.1 0.0056 1.2E-07 73.0 14.5 154 241-416 141-306 (445)
157 PRK05707 DNA polymerase III su 97.1 0.0076 1.7E-07 68.8 14.8 97 319-423 105-203 (328)
158 PRK07399 DNA polymerase III su 97.1 0.011 2.4E-07 67.2 15.8 195 214-422 4-220 (314)
159 COG0593 DnaA ATPase involved i 97.1 0.0042 9.1E-08 71.3 12.1 164 240-422 112-289 (408)
160 PF00004 AAA: ATPase family as 97.1 0.001 2.2E-08 65.8 6.4 22 244-265 1-22 (132)
161 PRK00149 dnaA chromosomal repl 97.1 0.0041 8.8E-08 75.5 12.9 159 241-419 148-318 (450)
162 PRK14965 DNA polymerase III su 97.1 0.0087 1.9E-07 74.2 15.9 196 214-425 16-223 (576)
163 PRK08118 topology modulation p 97.0 0.00037 8.1E-09 71.2 2.6 35 242-276 2-37 (167)
164 TIGR00763 lon ATP-dependent pr 97.0 0.014 3.1E-07 75.6 17.5 53 213-265 319-371 (775)
165 PRK05563 DNA polymerase III su 97.0 0.017 3.8E-07 71.2 17.3 191 214-420 16-217 (559)
166 KOG2982 Uncharacterized conser 97.0 0.00054 1.2E-08 72.0 3.4 194 1219-1420 65-267 (418)
167 PRK11034 clpA ATP-dependent Cl 97.0 0.0028 6E-08 80.2 10.3 156 215-390 187-362 (758)
168 TIGR03346 chaperone_ClpB ATP-d 97.0 0.005 1.1E-07 80.5 12.9 156 214-389 173-348 (852)
169 smart00382 AAA ATPases associa 96.9 0.0037 8E-08 62.8 8.9 88 242-333 3-91 (148)
170 TIGR00602 rad24 checkpoint pro 96.9 0.0041 8.9E-08 76.5 10.4 52 213-265 83-134 (637)
171 KOG0991 Replication factor C, 96.9 0.0065 1.4E-07 61.7 9.7 45 214-264 27-71 (333)
172 PTZ00361 26 proteosome regulat 96.8 0.0031 6.8E-08 74.3 8.3 158 214-391 183-368 (438)
173 TIGR03689 pup_AAA proteasome A 96.8 0.014 3E-07 69.9 13.5 167 214-390 182-378 (512)
174 PTZ00454 26S protease regulato 96.8 0.007 1.5E-07 71.0 10.8 179 214-417 145-351 (398)
175 PRK10536 hypothetical protein; 96.7 0.0092 2E-07 63.9 10.2 135 214-360 55-213 (262)
176 PRK10787 DNA-binding ATP-depen 96.7 0.045 9.7E-07 70.2 18.3 166 213-390 321-506 (784)
177 PRK10865 protein disaggregatio 96.7 0.012 2.7E-07 76.5 13.5 46 214-265 178-223 (857)
178 PRK08116 hypothetical protein; 96.7 0.0055 1.2E-07 68.0 9.0 104 242-360 115-221 (268)
179 PRK08769 DNA polymerase III su 96.7 0.019 4.2E-07 64.8 13.0 96 319-424 112-209 (319)
180 PRK08058 DNA polymerase III su 96.6 0.028 6E-07 64.8 14.5 161 215-389 6-181 (329)
181 KOG1644 U2-associated snRNP A' 96.6 0.0022 4.7E-08 64.1 4.5 101 625-728 41-148 (233)
182 PF04665 Pox_A32: Poxvirus A32 96.6 0.0033 7.3E-08 66.9 6.3 36 242-279 14-49 (241)
183 COG5238 RNA1 Ran GTPase-activa 96.6 0.0003 6.5E-09 72.8 -1.7 85 623-707 27-131 (388)
184 KOG0741 AAA+-type ATPase [Post 96.6 0.046 1E-06 62.7 15.1 149 239-413 536-704 (744)
185 PRK06090 DNA polymerase III su 96.6 0.052 1.1E-06 61.3 15.7 176 222-423 11-201 (319)
186 KOG1947 Leucine rich repeat pr 96.5 0.00022 4.7E-09 89.0 -3.9 111 1061-1171 187-308 (482)
187 KOG3665 ZYG-1-like serine/thre 96.5 0.0015 3.2E-08 81.8 3.2 106 594-707 146-261 (699)
188 COG1373 Predicted ATPase (AAA+ 96.5 0.02 4.3E-07 67.5 12.4 118 243-386 39-163 (398)
189 TIGR02640 gas_vesic_GvpN gas v 96.5 0.042 9.1E-07 61.2 14.4 41 243-288 23-63 (262)
190 PF13177 DNA_pol3_delta2: DNA 96.5 0.02 4.4E-07 58.2 10.8 136 218-377 1-161 (162)
191 CHL00176 ftsH cell division pr 96.5 0.023 4.9E-07 70.8 13.2 177 214-415 183-386 (638)
192 PRK07261 topology modulation p 96.5 0.006 1.3E-07 62.8 6.8 66 243-331 2-68 (171)
193 PRK06871 DNA polymerase III su 96.4 0.082 1.8E-06 59.9 16.1 176 223-420 11-200 (325)
194 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0036 7.7E-08 70.6 4.6 51 215-265 52-102 (361)
195 COG3267 ExeA Type II secretory 96.3 0.075 1.6E-06 55.9 13.7 181 240-425 50-247 (269)
196 COG0466 Lon ATP-dependent Lon 96.3 0.025 5.5E-07 67.9 11.6 166 213-390 322-508 (782)
197 KOG1947 Leucine rich repeat pr 96.3 0.0004 8.8E-09 86.6 -3.4 67 1082-1148 184-256 (482)
198 KOG2004 Mitochondrial ATP-depe 96.3 0.061 1.3E-06 64.3 14.3 108 212-331 409-516 (906)
199 TIGR01241 FtsH_fam ATP-depende 96.2 0.039 8.5E-07 67.9 13.4 179 214-417 55-260 (495)
200 PRK12608 transcription termina 96.2 0.022 4.8E-07 64.7 9.9 100 224-329 121-229 (380)
201 KOG3665 ZYG-1-like serine/thre 96.1 0.0028 6.1E-08 79.4 2.6 32 693-726 170-201 (699)
202 TIGR03345 VI_ClpV1 type VI sec 96.1 0.015 3.2E-07 75.4 8.9 136 214-359 566-718 (852)
203 TIGR03346 chaperone_ClpB ATP-d 96.0 0.026 5.6E-07 74.0 10.9 136 214-359 565-717 (852)
204 TIGR02639 ClpA ATP-dependent C 96.0 0.024 5.3E-07 73.0 10.4 120 214-345 454-578 (731)
205 PRK07993 DNA polymerase III su 96.0 0.03 6.6E-07 64.1 10.1 178 222-421 10-202 (334)
206 PF02562 PhoH: PhoH-like prote 96.0 0.021 4.5E-07 59.6 7.8 131 218-360 4-156 (205)
207 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.5E-08 39.2 1.0 21 650-670 1-21 (22)
208 PRK10865 protein disaggregatio 95.9 0.029 6.2E-07 73.1 10.5 122 214-345 568-695 (857)
209 PRK08939 primosomal protein Dn 95.9 0.018 4E-07 65.0 7.6 122 218-359 135-260 (306)
210 PF01695 IstB_IS21: IstB-like 95.9 0.0062 1.4E-07 62.9 3.5 100 242-360 48-150 (178)
211 TIGR02237 recomb_radB DNA repa 95.9 0.024 5.3E-07 61.0 8.3 49 239-290 10-58 (209)
212 COG0542 clpA ATP-binding subun 95.9 0.023 4.9E-07 70.4 8.7 119 214-346 491-619 (786)
213 COG1222 RPT1 ATP-dependent 26S 95.9 0.14 3E-06 56.5 13.4 188 215-428 152-372 (406)
214 PRK06921 hypothetical protein; 95.8 0.022 4.7E-07 63.1 7.7 38 241-279 117-154 (266)
215 PRK08181 transposase; Validate 95.8 0.014 3E-07 64.4 6.0 101 242-360 107-209 (269)
216 KOG2228 Origin recognition com 95.8 0.064 1.4E-06 58.4 10.4 170 215-389 25-218 (408)
217 KOG2739 Leucine-rich acidic nu 95.8 0.0052 1.1E-07 64.5 2.3 105 624-732 41-155 (260)
218 PRK06964 DNA polymerase III su 95.8 0.18 3.9E-06 57.7 14.8 93 319-423 131-225 (342)
219 TIGR02902 spore_lonB ATP-depen 95.8 0.031 6.7E-07 68.8 9.4 45 214-264 65-109 (531)
220 PRK06526 transposase; Provisio 95.8 0.012 2.5E-07 64.6 5.1 24 242-265 99-122 (254)
221 PF00158 Sigma54_activat: Sigm 95.8 0.033 7.1E-07 56.9 8.0 45 216-264 1-45 (168)
222 PRK09361 radB DNA repair and r 95.8 0.038 8.2E-07 60.3 9.2 48 239-289 21-68 (225)
223 COG2607 Predicted ATPase (AAA+ 95.7 0.04 8.6E-07 57.0 8.2 120 213-359 59-182 (287)
224 CHL00095 clpC Clp protease ATP 95.7 0.037 8E-07 72.3 10.2 136 214-359 509-661 (821)
225 cd01393 recA_like RecA is a b 95.7 0.056 1.2E-06 59.1 10.2 91 239-330 17-124 (226)
226 KOG2123 Uncharacterized conser 95.6 0.0014 3E-08 68.4 -2.4 40 624-664 39-78 (388)
227 PF13207 AAA_17: AAA domain; P 95.6 0.0087 1.9E-07 57.9 3.1 22 243-264 1-22 (121)
228 PRK06696 uridine kinase; Valid 95.6 0.015 3.3E-07 63.1 5.2 45 218-265 2-46 (223)
229 PF00448 SRP54: SRP54-type pro 95.5 0.011 2.3E-07 62.2 3.6 87 241-329 1-92 (196)
230 PF07693 KAP_NTPase: KAP famil 95.5 0.29 6.2E-06 57.1 16.1 46 220-268 2-47 (325)
231 PRK04296 thymidine kinase; Pro 95.5 0.023 4.9E-07 59.7 6.1 113 242-361 3-117 (190)
232 PRK05541 adenylylsulfate kinas 95.5 0.021 4.6E-07 59.5 5.8 36 240-277 6-41 (176)
233 PRK11889 flhF flagellar biosyn 95.5 0.085 1.8E-06 60.1 10.5 89 240-331 240-331 (436)
234 PRK12377 putative replication 95.4 0.029 6.3E-07 61.0 6.7 80 242-338 102-181 (248)
235 PRK09183 transposase/IS protei 95.4 0.024 5.3E-07 62.6 6.1 23 242-264 103-125 (259)
236 cd01133 F1-ATPase_beta F1 ATP 95.4 0.057 1.2E-06 59.0 8.8 88 240-329 68-172 (274)
237 KOG1514 Origin recognition com 95.4 0.65 1.4E-05 56.1 17.8 205 214-426 396-624 (767)
238 PF10443 RNA12: RNA12 protein; 95.4 0.55 1.2E-05 54.1 16.6 213 219-441 1-297 (431)
239 COG0470 HolB ATPase involved i 95.3 0.068 1.5E-06 62.4 9.9 145 215-379 2-170 (325)
240 cd01123 Rad51_DMC1_radA Rad51_ 95.3 0.069 1.5E-06 58.8 9.4 52 239-290 17-72 (235)
241 KOG1644 U2-associated snRNP A' 95.3 0.031 6.7E-07 56.2 5.7 82 1298-1382 43-124 (233)
242 KOG0733 Nuclear AAA ATPase (VC 95.3 0.31 6.8E-06 57.4 14.5 98 214-331 190-293 (802)
243 TIGR03499 FlhF flagellar biosy 95.3 0.054 1.2E-06 60.8 8.5 86 240-329 193-281 (282)
244 TIGR01243 CDC48 AAA family ATP 95.3 0.16 3.5E-06 65.8 14.0 179 214-417 453-657 (733)
245 cd01394 radB RadB. The archaea 95.3 0.067 1.5E-06 58.0 8.9 44 239-284 17-60 (218)
246 PHA00729 NTP-binding motif con 95.3 0.038 8.2E-07 58.3 6.5 25 240-264 16-40 (226)
247 PRK15455 PrkA family serine pr 95.2 0.014 3E-07 69.2 3.5 49 215-263 77-125 (644)
248 PF07728 AAA_5: AAA domain (dy 95.1 0.0097 2.1E-07 59.2 1.6 84 244-340 2-85 (139)
249 PRK08699 DNA polymerase III su 95.1 0.033 7.1E-07 63.6 6.0 70 320-389 113-184 (325)
250 PRK04132 replication factor C 95.1 0.36 7.8E-06 61.6 15.5 152 249-420 574-728 (846)
251 PRK11034 clpA ATP-dependent Cl 95.0 0.077 1.7E-06 67.5 9.5 118 214-344 458-581 (758)
252 CHL00195 ycf46 Ycf46; Provisio 95.0 0.12 2.6E-06 62.3 10.5 159 214-392 228-407 (489)
253 KOG0731 AAA+-type ATPase conta 94.9 0.36 7.9E-06 59.7 14.5 183 214-420 311-521 (774)
254 TIGR01243 CDC48 AAA family ATP 94.9 0.13 2.9E-06 66.7 11.6 179 214-417 178-381 (733)
255 PHA02244 ATPase-like protein 94.9 0.14 3E-06 58.1 10.0 22 243-264 121-142 (383)
256 COG0572 Udk Uridine kinase [Nu 94.9 0.057 1.2E-06 56.2 6.4 78 239-321 6-85 (218)
257 COG1223 Predicted ATPase (AAA+ 94.8 0.19 4.1E-06 52.5 9.9 157 214-390 121-297 (368)
258 PRK13695 putative NTPase; Prov 94.8 0.014 3E-07 60.7 1.9 23 243-265 2-24 (174)
259 COG2812 DnaX DNA polymerase II 94.8 0.12 2.7E-06 61.5 9.8 188 214-417 16-214 (515)
260 PRK07952 DNA replication prote 94.7 0.15 3.2E-06 55.5 9.5 103 241-359 99-204 (244)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.17 3.8E-06 50.4 9.5 104 242-364 27-131 (144)
262 cd03214 ABC_Iron-Siderophores_ 94.7 0.18 4E-06 52.6 10.1 119 241-363 25-161 (180)
263 PF14532 Sigma54_activ_2: Sigm 94.7 0.018 3.9E-07 57.0 2.4 108 217-360 1-110 (138)
264 COG1618 Predicted nucleotide k 94.7 0.027 5.9E-07 54.5 3.3 27 242-268 6-32 (179)
265 KOG2035 Replication factor C, 94.6 0.11 2.4E-06 54.9 7.5 205 216-442 15-257 (351)
266 COG0468 RecA RecA/RadA recombi 94.5 0.13 2.9E-06 56.4 8.6 88 239-329 58-150 (279)
267 cd03222 ABC_RNaseL_inhibitor T 94.5 0.15 3.3E-06 52.5 8.6 102 242-364 26-136 (177)
268 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3E-07 36.3 0.6 22 627-648 1-22 (22)
269 TIGR02238 recomb_DMC1 meiotic 94.5 0.13 2.9E-06 58.3 8.9 58 239-297 94-155 (313)
270 PRK08233 hypothetical protein; 94.5 0.1 2.3E-06 54.7 7.7 25 241-265 3-27 (182)
271 cd02025 PanK Pantothenate kina 94.5 0.12 2.5E-06 55.8 8.0 75 243-318 1-76 (220)
272 COG1875 NYN ribonuclease and A 94.5 0.1 2.3E-06 57.5 7.5 132 218-360 228-388 (436)
273 PRK12727 flagellar biosynthesi 94.5 0.15 3.3E-06 60.6 9.4 88 240-330 349-438 (559)
274 TIGR00959 ffh signal recogniti 94.5 0.18 4E-06 59.5 10.2 25 240-264 98-122 (428)
275 KOG0473 Leucine-rich repeat pr 94.4 0.0029 6.3E-08 64.3 -4.0 86 621-707 37-122 (326)
276 PRK10867 signal recognition pa 94.4 0.17 3.7E-06 59.8 9.8 25 239-263 98-122 (433)
277 cd01131 PilT Pilus retraction 94.4 0.05 1.1E-06 57.7 5.0 112 242-364 2-113 (198)
278 PRK14722 flhF flagellar biosyn 94.4 0.11 2.4E-06 59.8 8.0 88 241-331 137-226 (374)
279 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.13 2.8E-06 51.3 7.4 117 242-361 3-139 (159)
280 COG1484 DnaC DNA replication p 94.4 0.083 1.8E-06 58.1 6.6 81 241-338 105-185 (254)
281 KOG1969 DNA replication checkp 94.3 0.098 2.1E-06 62.9 7.5 75 239-333 324-400 (877)
282 PF00485 PRK: Phosphoribulokin 94.3 0.15 3.2E-06 54.1 8.3 80 243-324 1-87 (194)
283 PRK05439 pantothenate kinase; 94.3 0.19 4.2E-06 56.3 9.5 83 238-321 83-166 (311)
284 TIGR02012 tigrfam_recA protein 94.3 0.11 2.4E-06 58.6 7.6 85 239-330 53-143 (321)
285 PTZ00301 uridine kinase; Provi 94.3 0.08 1.7E-06 56.1 6.1 24 241-264 3-26 (210)
286 cd01120 RecA-like_NTPases RecA 94.3 0.17 3.7E-06 51.9 8.6 40 243-284 1-40 (165)
287 KOG2123 Uncharacterized conser 94.2 0.0065 1.4E-07 63.6 -2.1 105 624-731 17-128 (388)
288 PRK06067 flagellar accessory p 94.2 0.18 3.9E-06 55.3 9.0 87 239-330 23-130 (234)
289 PF13306 LRR_5: Leucine rich r 94.2 0.26 5.7E-06 48.1 9.4 120 1244-1373 7-128 (129)
290 COG0542 clpA ATP-binding subun 94.2 0.15 3.2E-06 63.5 8.9 44 214-263 170-213 (786)
291 cd03238 ABC_UvrA The excision 94.1 0.19 4.2E-06 51.7 8.4 114 241-364 21-153 (176)
292 PF13671 AAA_33: AAA domain; P 94.1 0.12 2.6E-06 51.7 6.9 21 243-263 1-21 (143)
293 KOG0730 AAA+-type ATPase [Post 94.1 0.25 5.4E-06 59.1 10.2 173 214-407 434-631 (693)
294 cd00983 recA RecA is a bacter 94.1 0.085 1.8E-06 59.4 6.2 84 239-329 53-142 (325)
295 PRK12724 flagellar biosynthesi 94.1 0.12 2.6E-06 59.8 7.5 25 240-264 222-246 (432)
296 PRK03839 putative kinase; Prov 94.1 0.082 1.8E-06 55.3 5.8 23 243-265 2-24 (180)
297 cd03247 ABCC_cytochrome_bd The 94.1 0.22 4.7E-06 51.9 8.9 117 242-364 29-161 (178)
298 PRK09354 recA recombinase A; P 94.1 0.19 4E-06 57.2 8.7 85 239-330 58-148 (349)
299 PRK05703 flhF flagellar biosyn 94.0 0.31 6.8E-06 58.0 11.0 86 241-329 221-308 (424)
300 TIGR00554 panK_bact pantothena 94.0 0.21 4.6E-06 55.6 9.0 81 239-320 60-141 (290)
301 PF08423 Rad51: Rad51; InterP 94.0 0.12 2.7E-06 56.9 7.1 56 240-296 37-96 (256)
302 KOG1532 GTPase XAB1, interacts 94.0 0.15 3.2E-06 53.7 7.0 30 239-268 17-46 (366)
303 cd03216 ABC_Carb_Monos_I This 94.0 0.21 4.5E-06 51.1 8.3 116 242-364 27-146 (163)
304 PRK00771 signal recognition pa 93.9 0.25 5.5E-06 58.5 9.9 28 239-266 93-120 (437)
305 PRK04301 radA DNA repair and r 93.9 0.19 4.1E-06 57.9 8.6 53 239-291 100-156 (317)
306 PF13604 AAA_30: AAA domain; P 93.9 0.04 8.6E-07 58.2 2.9 108 242-361 19-132 (196)
307 cd03223 ABCD_peroxisomal_ALDP 93.9 0.37 7.9E-06 49.5 9.9 117 241-364 27-152 (166)
308 KOG0733 Nuclear AAA ATPase (VC 93.8 0.51 1.1E-05 55.8 11.7 155 241-417 545-718 (802)
309 PRK09270 nucleoside triphospha 93.8 0.27 5.8E-06 53.6 9.4 27 239-265 31-57 (229)
310 TIGR01650 PD_CobS cobaltochela 93.8 0.98 2.1E-05 50.9 13.5 42 215-264 46-87 (327)
311 cd03115 SRP The signal recogni 93.7 0.16 3.5E-06 52.7 7.1 23 243-265 2-24 (173)
312 PRK07667 uridine kinase; Provi 93.7 0.081 1.7E-06 55.8 4.9 39 223-265 3-41 (193)
313 PRK07132 DNA polymerase III su 93.6 1.4 3.1E-05 49.5 14.7 153 241-423 18-185 (299)
314 KOG0734 AAA+-type ATPase conta 93.6 0.35 7.5E-06 56.0 9.6 55 214-268 304-364 (752)
315 PF00006 ATP-synt_ab: ATP synt 93.5 0.23 5.1E-06 52.7 7.9 82 242-329 16-114 (215)
316 cd03228 ABCC_MRP_Like The MRP 93.5 0.28 6E-06 50.7 8.4 121 241-365 28-160 (171)
317 PRK13531 regulatory ATPase Rav 93.5 0.073 1.6E-06 62.6 4.3 42 215-264 21-62 (498)
318 PRK06547 hypothetical protein; 93.5 0.099 2.1E-06 53.6 4.8 26 239-264 13-38 (172)
319 COG1428 Deoxynucleoside kinase 93.4 0.055 1.2E-06 55.4 2.8 26 241-266 4-29 (216)
320 cd02019 NK Nucleoside/nucleoti 93.4 0.057 1.2E-06 45.6 2.5 22 243-264 1-22 (69)
321 PF13238 AAA_18: AAA domain; P 93.4 0.056 1.2E-06 52.9 2.9 21 244-264 1-21 (129)
322 PRK13948 shikimate kinase; Pro 93.4 0.41 8.9E-06 49.5 9.2 25 240-264 9-33 (182)
323 KOG0744 AAA+-type ATPase [Post 93.3 0.24 5.1E-06 53.7 7.3 79 241-329 177-259 (423)
324 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.099 2.1E-06 58.5 4.8 52 213-264 60-111 (358)
325 COG1419 FlhF Flagellar GTP-bin 93.3 0.26 5.6E-06 56.3 8.1 86 241-329 203-290 (407)
326 TIGR02236 recomb_radA DNA repa 93.3 0.4 8.7E-06 55.1 10.1 57 239-296 93-153 (310)
327 TIGR01817 nifA Nif-specific re 93.3 0.35 7.6E-06 60.3 10.3 48 213-264 195-242 (534)
328 COG5238 RNA1 Ran GTPase-activa 93.3 0.017 3.6E-07 60.4 -1.2 85 1061-1146 29-131 (388)
329 PRK11608 pspF phage shock prot 93.3 0.21 4.5E-06 57.6 7.6 45 215-263 7-51 (326)
330 PLN00020 ribulose bisphosphate 93.3 0.2 4.3E-06 56.4 7.0 27 239-265 146-172 (413)
331 PRK06835 DNA replication prote 93.3 0.13 2.8E-06 58.7 5.8 102 242-359 184-288 (329)
332 PF13504 LRR_7: Leucine rich r 93.3 0.051 1.1E-06 31.2 1.3 16 650-665 2-17 (17)
333 COG1121 ZnuC ABC-type Mn/Zn tr 93.2 0.44 9.6E-06 51.3 9.4 121 242-364 31-203 (254)
334 PLN03186 DNA repair protein RA 93.2 0.41 8.9E-06 54.9 9.8 58 239-297 121-182 (342)
335 cd03230 ABC_DR_subfamily_A Thi 93.2 0.26 5.6E-06 51.1 7.6 118 241-364 26-159 (173)
336 PRK15429 formate hydrogenlyase 93.2 0.3 6.5E-06 62.9 9.8 47 214-264 376-422 (686)
337 PRK05480 uridine/cytidine kina 93.2 0.074 1.6E-06 57.2 3.7 25 240-264 5-29 (209)
338 COG1102 Cmk Cytidylate kinase 93.1 0.18 3.8E-06 49.1 5.5 44 243-299 2-45 (179)
339 cd01122 GP4d_helicase GP4d_hel 93.1 0.57 1.2E-05 52.8 10.9 53 241-296 30-82 (271)
340 PRK12723 flagellar biosynthesi 93.1 0.33 7.1E-06 56.6 8.8 89 240-331 173-265 (388)
341 TIGR00390 hslU ATP-dependent p 93.1 0.24 5.1E-06 57.2 7.4 83 214-296 12-104 (441)
342 COG4608 AppF ABC-type oligopep 93.1 0.33 7.1E-06 52.2 8.0 123 241-367 39-177 (268)
343 KOG0735 AAA+-type ATPase [Post 93.0 0.2 4.4E-06 60.0 7.0 69 242-330 432-504 (952)
344 PTZ00088 adenylate kinase 1; P 93.0 0.11 2.4E-06 55.9 4.7 22 243-264 8-29 (229)
345 TIGR00235 udk uridine kinase. 93.0 0.079 1.7E-06 56.8 3.5 25 240-264 5-29 (207)
346 PRK14974 cell division protein 93.0 0.49 1.1E-05 54.1 9.8 89 240-331 139-233 (336)
347 PF01583 APS_kinase: Adenylyls 92.9 0.077 1.7E-06 52.6 3.0 26 241-266 2-27 (156)
348 COG0563 Adk Adenylate kinase a 92.9 0.15 3.3E-06 52.5 5.2 22 243-264 2-23 (178)
349 KOG0473 Leucine-rich repeat pr 92.9 0.0081 1.8E-07 61.2 -3.9 86 638-725 30-116 (326)
350 PF00154 RecA: recA bacterial 92.9 0.19 4E-06 56.5 6.2 86 239-331 51-142 (322)
351 COG0464 SpoVK ATPases of the A 92.9 0.66 1.4E-05 57.4 11.8 157 215-391 243-424 (494)
352 PF07724 AAA_2: AAA domain (Cd 92.8 0.07 1.5E-06 54.6 2.7 40 241-281 3-42 (171)
353 PLN03187 meiotic recombination 92.8 0.65 1.4E-05 53.2 10.5 58 239-297 124-185 (344)
354 TIGR00064 ftsY signal recognit 92.7 0.37 8E-06 53.6 8.2 88 240-330 71-164 (272)
355 PRK12726 flagellar biosynthesi 92.7 0.45 9.8E-06 54.3 8.8 89 240-331 205-296 (407)
356 PRK10733 hflB ATP-dependent me 92.6 0.66 1.4E-05 58.8 11.3 157 214-390 152-335 (644)
357 cd02027 APSK Adenosine 5'-phos 92.5 0.21 4.5E-06 50.1 5.5 23 243-265 1-23 (149)
358 cd03246 ABCC_Protease_Secretio 92.5 0.38 8.3E-06 49.8 7.7 23 242-264 29-51 (173)
359 PRK05201 hslU ATP-dependent pr 92.5 0.26 5.6E-06 56.9 6.8 83 214-296 15-107 (443)
360 PRK08972 fliI flagellum-specif 92.5 0.44 9.6E-06 55.7 8.8 85 241-329 162-261 (444)
361 KOG1051 Chaperone HSP104 and r 92.5 0.62 1.4E-05 59.1 10.6 119 214-345 562-685 (898)
362 PRK06762 hypothetical protein; 92.5 0.1 2.2E-06 53.8 3.3 23 242-264 3-25 (166)
363 cd03229 ABC_Class3 This class 92.5 0.35 7.6E-06 50.4 7.4 24 241-264 26-49 (178)
364 TIGR02239 recomb_RAD51 DNA rep 92.4 0.54 1.2E-05 53.6 9.4 57 239-296 94-154 (316)
365 PF08433 KTI12: Chromatin asso 92.4 0.25 5.4E-06 54.7 6.5 24 242-265 2-25 (270)
366 cd01125 repA Hexameric Replica 92.4 0.65 1.4E-05 51.1 9.8 22 243-264 3-24 (239)
367 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.72 1.6E-05 50.6 10.0 49 239-291 19-67 (237)
368 PTZ00035 Rad51 protein; Provis 92.3 0.9 2E-05 52.3 11.1 57 239-296 116-176 (337)
369 cd03281 ABC_MSH5_euk MutS5 hom 92.3 0.22 4.9E-06 53.3 5.8 23 241-263 29-51 (213)
370 TIGR02974 phageshock_pspF psp 92.3 0.34 7.4E-06 55.8 7.6 45 216-264 1-45 (329)
371 PRK14723 flhF flagellar biosyn 92.3 0.74 1.6E-05 57.9 10.9 87 241-330 185-273 (767)
372 TIGR00150 HI0065_YjeE ATPase, 92.3 0.2 4.4E-06 48.2 4.7 42 221-266 6-47 (133)
373 COG4618 ArpD ABC-type protease 92.1 0.37 8.1E-06 55.9 7.4 22 242-263 363-384 (580)
374 PRK15453 phosphoribulokinase; 92.1 0.56 1.2E-05 51.3 8.4 77 240-319 4-89 (290)
375 PRK10463 hydrogenase nickel in 92.1 0.63 1.4E-05 51.4 8.9 86 239-330 102-194 (290)
376 PRK05022 anaerobic nitric oxid 92.1 0.44 9.5E-06 58.9 8.7 48 213-264 186-233 (509)
377 KOG2739 Leucine-rich acidic nu 92.0 0.087 1.9E-06 55.7 2.1 61 646-707 40-102 (260)
378 PF00910 RNA_helicase: RNA hel 92.0 0.09 1.9E-06 49.2 2.0 22 244-265 1-22 (107)
379 cd03217 ABC_FeS_Assembly ABC-t 92.0 0.43 9.4E-06 50.8 7.6 24 241-264 26-49 (200)
380 COG2884 FtsE Predicted ATPase 92.0 1 2.2E-05 45.4 9.2 58 307-367 142-204 (223)
381 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.33 7.1E-06 49.4 6.3 116 242-365 26-145 (157)
382 PF12775 AAA_7: P-loop contain 92.0 0.18 4E-06 56.0 4.8 34 224-264 23-56 (272)
383 cd02028 UMPK_like Uridine mono 91.9 0.23 4.9E-06 51.6 5.1 22 243-264 1-22 (179)
384 cd01135 V_A-ATPase_B V/A-type 91.8 0.53 1.2E-05 51.4 7.9 90 240-329 68-175 (276)
385 PF07726 AAA_3: ATPase family 91.8 0.085 1.8E-06 49.7 1.6 27 244-272 2-28 (131)
386 PRK06217 hypothetical protein; 91.8 0.25 5.4E-06 51.7 5.3 24 243-266 3-26 (183)
387 KOG0728 26S proteasome regulat 91.7 2.2 4.8E-05 44.4 11.6 189 216-426 148-366 (404)
388 TIGR01425 SRP54_euk signal rec 91.7 0.78 1.7E-05 53.9 9.7 25 240-264 99-123 (429)
389 PRK06002 fliI flagellum-specif 91.7 0.67 1.5E-05 54.6 9.1 86 241-329 165-263 (450)
390 PRK14721 flhF flagellar biosyn 91.7 0.73 1.6E-05 54.2 9.4 88 240-329 190-278 (420)
391 TIGR01360 aden_kin_iso1 adenyl 91.7 0.14 3.1E-06 54.0 3.4 25 240-264 2-26 (188)
392 PRK00625 shikimate kinase; Pro 91.7 0.13 2.7E-06 52.9 2.8 22 243-264 2-23 (173)
393 cd03282 ABC_MSH4_euk MutS4 hom 91.7 0.18 3.8E-06 53.5 4.0 121 241-368 29-159 (204)
394 PRK04040 adenylate kinase; Pro 91.6 0.14 3.1E-06 53.5 3.2 24 242-265 3-26 (188)
395 TIGR02858 spore_III_AA stage I 91.6 0.7 1.5E-05 51.2 8.7 128 223-365 98-234 (270)
396 PRK12597 F0F1 ATP synthase sub 91.5 0.46 1E-05 56.3 7.6 89 240-329 142-246 (461)
397 PF06309 Torsin: Torsin; Inte 91.5 0.28 6.1E-06 46.2 4.6 50 215-264 26-76 (127)
398 PRK10751 molybdopterin-guanine 91.5 0.19 4E-06 51.1 3.8 26 240-265 5-30 (173)
399 PRK09280 F0F1 ATP synthase sub 91.4 0.71 1.5E-05 54.6 8.9 89 240-329 143-247 (463)
400 PLN02348 phosphoribulokinase 91.4 0.82 1.8E-05 52.6 9.2 27 239-265 47-73 (395)
401 cd01121 Sms Sms (bacterial rad 91.4 0.62 1.3E-05 54.3 8.4 82 240-329 81-167 (372)
402 PRK06995 flhF flagellar biosyn 91.3 1 2.2E-05 53.9 10.2 25 241-265 256-280 (484)
403 cd02024 NRK1 Nicotinamide ribo 91.3 0.13 2.8E-06 53.3 2.5 22 243-264 1-22 (187)
404 PF03205 MobB: Molybdopterin g 91.3 0.14 3E-06 50.5 2.5 39 242-281 1-39 (140)
405 KOG0924 mRNA splicing factor A 91.3 1.1 2.3E-05 53.5 9.9 140 223-375 361-528 (1042)
406 KOG0738 AAA+-type ATPase [Post 91.2 0.39 8.5E-06 53.5 6.1 51 215-265 213-269 (491)
407 PRK00889 adenylylsulfate kinas 91.2 0.19 4E-06 52.3 3.7 26 240-265 3-28 (175)
408 TIGR03575 selen_PSTK_euk L-ser 91.1 0.47 1E-05 54.0 6.9 23 244-266 2-24 (340)
409 COG4088 Predicted nucleotide k 91.1 0.12 2.5E-06 52.2 1.9 24 242-265 2-25 (261)
410 COG0194 Gmk Guanylate kinase [ 91.1 0.26 5.7E-06 49.6 4.2 25 241-265 4-28 (191)
411 cd02023 UMPK Uridine monophosp 91.1 0.14 3E-06 54.6 2.5 22 243-264 1-22 (198)
412 PRK08927 fliI flagellum-specif 91.1 0.83 1.8E-05 53.8 9.0 86 240-329 157-257 (442)
413 COG0465 HflB ATP-dependent Zn 91.1 1.3 2.7E-05 54.0 10.7 182 212-418 148-356 (596)
414 PF03308 ArgK: ArgK protein; 91.0 0.36 7.7E-06 51.6 5.4 60 222-285 14-73 (266)
415 PF03193 DUF258: Protein of un 91.0 0.3 6.4E-06 48.8 4.5 36 221-265 24-59 (161)
416 PF13481 AAA_25: AAA domain; P 91.0 0.82 1.8E-05 48.4 8.4 41 242-282 33-81 (193)
417 COG2019 AdkA Archaeal adenylat 90.9 0.2 4.3E-06 49.0 3.1 24 241-264 4-27 (189)
418 TIGR01069 mutS2 MutS2 family p 90.9 0.68 1.5E-05 59.6 8.9 185 241-441 322-518 (771)
419 cd01134 V_A-ATPase_A V/A-type 90.8 1.3 2.8E-05 50.0 9.7 48 241-292 157-205 (369)
420 TIGR02322 phosphon_PhnN phosph 90.8 0.18 3.9E-06 52.7 3.1 23 242-264 2-24 (179)
421 PF13306 LRR_5: Leucine rich r 90.7 1.3 2.9E-05 43.1 9.1 104 1267-1380 6-112 (129)
422 cd03283 ABC_MutS-like MutS-lik 90.7 0.69 1.5E-05 49.0 7.4 22 242-263 26-47 (199)
423 cd03215 ABC_Carb_Monos_II This 90.7 1.1 2.3E-05 46.9 8.8 23 242-264 27-49 (182)
424 PRK00131 aroK shikimate kinase 90.7 0.19 4E-06 52.4 3.1 24 241-264 4-27 (175)
425 COG1066 Sms Predicted ATP-depe 90.7 0.63 1.4E-05 52.8 7.1 82 240-330 92-178 (456)
426 PTZ00185 ATPase alpha subunit; 90.7 1.1 2.3E-05 53.1 9.3 90 240-329 188-298 (574)
427 TIGR01359 UMP_CMP_kin_fam UMP- 90.7 0.16 3.4E-06 53.4 2.5 22 243-264 1-22 (183)
428 TIGR00708 cobA cob(I)alamin ad 90.6 0.97 2.1E-05 45.8 7.8 117 242-360 6-140 (173)
429 COG0467 RAD55 RecA-superfamily 90.5 0.46 9.9E-06 53.1 6.2 42 239-282 21-62 (260)
430 cd01124 KaiC KaiC is a circadi 90.5 0.57 1.2E-05 49.3 6.6 37 244-282 2-38 (187)
431 COG1703 ArgK Putative periplas 90.5 0.34 7.3E-06 52.5 4.6 62 224-289 38-99 (323)
432 KOG2170 ATPase of the AAA+ sup 90.5 0.28 6.1E-06 52.8 4.0 53 213-265 81-134 (344)
433 cd00544 CobU Adenosylcobinamid 90.4 0.63 1.4E-05 47.5 6.5 78 244-329 2-82 (169)
434 PF13504 LRR_7: Leucine rich r 90.4 0.18 4E-06 28.9 1.5 17 626-642 1-17 (17)
435 PRK04328 hypothetical protein; 90.4 1 2.2E-05 49.7 8.6 41 240-282 22-62 (249)
436 COG5635 Predicted NTPase (NACH 90.4 0.27 6E-06 64.4 4.9 139 241-383 222-371 (824)
437 cd02029 PRK_like Phosphoribulo 90.4 0.66 1.4E-05 50.2 6.8 76 243-320 1-84 (277)
438 COG0529 CysC Adenylylsulfate k 90.4 0.23 5E-06 49.1 3.1 28 239-266 21-48 (197)
439 COG0714 MoxR-like ATPases [Gen 90.4 0.5 1.1E-05 54.9 6.5 63 215-290 25-87 (329)
440 cd04159 Arl10_like Arl10-like 90.4 0.91 2E-05 46.0 7.9 21 244-264 2-22 (159)
441 PRK06731 flhF flagellar biosyn 90.3 1.3 2.8E-05 49.0 9.2 88 241-331 75-165 (270)
442 PRK03846 adenylylsulfate kinas 90.3 0.26 5.5E-06 52.4 3.7 26 239-264 22-47 (198)
443 TIGR03305 alt_F1F0_F1_bet alte 90.3 0.69 1.5E-05 54.6 7.4 89 240-329 137-241 (449)
444 TIGR03263 guanyl_kin guanylate 90.2 0.22 4.7E-06 52.1 3.1 23 242-264 2-24 (180)
445 PF08477 Miro: Miro-like prote 90.2 0.23 5E-06 47.6 3.1 22 244-265 2-23 (119)
446 cd02021 GntK Gluconate kinase 90.2 0.19 4.2E-06 50.6 2.6 22 243-264 1-22 (150)
447 cd00227 CPT Chloramphenicol (C 90.2 0.21 4.6E-06 51.8 2.9 23 242-264 3-25 (175)
448 TIGR03498 FliI_clade3 flagella 90.1 1 2.2E-05 53.0 8.7 85 241-329 140-239 (418)
449 PTZ00494 tuzin-like protein; P 90.0 6.1 0.00013 45.5 14.0 168 211-390 368-544 (664)
450 TIGR00176 mobB molybdopterin-g 90.0 0.25 5.4E-06 49.7 3.1 35 243-278 1-35 (155)
451 KOG0736 Peroxisome assembly fa 90.0 6.4 0.00014 48.5 15.0 98 214-331 672-775 (953)
452 COG1936 Predicted nucleotide k 90.0 0.24 5.2E-06 49.0 2.8 20 243-262 2-21 (180)
453 PRK12678 transcription termina 89.9 0.89 1.9E-05 54.3 7.9 88 241-329 416-512 (672)
454 PRK13765 ATP-dependent proteas 89.9 0.44 9.6E-06 59.3 5.8 75 214-298 31-105 (637)
455 COG3640 CooC CO dehydrogenase 89.9 0.37 8.1E-06 50.2 4.2 42 243-285 2-43 (255)
456 PF01078 Mg_chelatase: Magnesi 89.9 0.43 9.3E-06 49.6 4.7 42 214-263 3-44 (206)
457 PRK13949 shikimate kinase; Pro 89.9 0.23 4.9E-06 51.0 2.8 23 243-265 3-25 (169)
458 PRK08149 ATP synthase SpaL; Va 89.8 1.1 2.3E-05 52.8 8.5 85 241-329 151-250 (428)
459 KOG0739 AAA+-type ATPase [Post 89.8 5.6 0.00012 42.9 12.7 51 215-265 134-190 (439)
460 PRK05973 replicative DNA helic 89.8 1 2.2E-05 48.6 7.6 49 240-292 63-111 (237)
461 cd01136 ATPase_flagellum-secre 89.8 1.7 3.8E-05 49.2 9.9 85 241-329 69-168 (326)
462 cd03369 ABCC_NFT1 Domain 2 of 89.7 2.5 5.4E-05 45.3 10.8 24 241-264 34-57 (207)
463 cd01132 F1_ATPase_alpha F1 ATP 89.7 1.4 3E-05 48.3 8.7 83 241-329 69-170 (274)
464 cd03250 ABCC_MRP_domain1 Domai 89.7 3.8 8.3E-05 43.7 12.2 25 241-265 31-55 (204)
465 cd02020 CMPK Cytidine monophos 89.6 0.22 4.8E-06 50.0 2.5 22 243-264 1-22 (147)
466 PRK13947 shikimate kinase; Pro 89.6 0.24 5.1E-06 51.3 2.7 22 243-264 3-24 (171)
467 COG1124 DppF ABC-type dipeptid 89.6 0.28 6E-06 51.6 3.1 23 241-263 33-55 (252)
468 TIGR01420 pilT_fam pilus retra 89.5 0.5 1.1E-05 54.9 5.6 110 242-362 123-232 (343)
469 PRK10416 signal recognition pa 89.5 1.1 2.4E-05 51.1 8.2 27 240-266 113-139 (318)
470 cd00820 PEPCK_HprK Phosphoenol 89.5 0.32 7E-06 44.7 3.1 22 241-262 15-36 (107)
471 TIGR03881 KaiC_arch_4 KaiC dom 89.4 1.5 3.3E-05 47.9 9.0 41 240-282 19-59 (229)
472 cd00071 GMPK Guanosine monopho 89.3 0.26 5.7E-06 48.5 2.6 21 244-264 2-22 (137)
473 PRK12339 2-phosphoglycerate ki 89.3 0.32 6.9E-06 51.1 3.4 24 241-264 3-26 (197)
474 PRK10078 ribose 1,5-bisphospho 89.3 0.29 6.2E-06 51.4 3.1 23 242-264 3-25 (186)
475 KOG0079 GTP-binding protein H- 89.3 0.46 1E-05 44.8 3.9 82 245-332 12-93 (198)
476 COG4240 Predicted kinase [Gene 89.2 1.2 2.5E-05 46.0 7.0 81 239-320 48-133 (300)
477 PF00625 Guanylate_kin: Guanyl 89.2 0.37 8.1E-06 50.4 3.9 34 242-277 3-36 (183)
478 PRK00300 gmk guanylate kinase; 89.2 0.3 6.6E-06 52.3 3.3 24 241-264 5-28 (205)
479 PRK09099 type III secretion sy 89.1 1.3 2.7E-05 52.5 8.5 87 240-329 162-262 (441)
480 PRK13975 thymidylate kinase; P 89.1 0.3 6.4E-06 52.0 3.1 25 242-266 3-27 (196)
481 smart00534 MUTSac ATPase domai 89.1 1.5 3.3E-05 45.9 8.4 118 243-366 1-128 (185)
482 PRK05688 fliI flagellum-specif 89.1 1.7 3.8E-05 51.3 9.5 85 241-329 168-267 (451)
483 KOG0652 26S proteasome regulat 89.1 4.7 0.0001 42.4 11.3 49 215-263 172-227 (424)
484 PRK07594 type III secretion sy 89.0 1.8 3.9E-05 51.1 9.6 86 240-329 154-254 (433)
485 cd03287 ABC_MSH3_euk MutS3 hom 89.0 1.3 2.8E-05 47.6 7.8 23 241-263 31-53 (222)
486 PRK06936 type III secretion sy 89.0 1.5 3.1E-05 51.8 8.8 86 240-329 161-261 (439)
487 PRK14737 gmk guanylate kinase; 89.0 0.39 8.5E-06 50.1 3.8 25 240-264 3-27 (186)
488 TIGR00041 DTMP_kinase thymidyl 89.0 1.4 2.9E-05 46.8 8.1 25 242-266 4-28 (195)
489 TIGR03324 alt_F1F0_F1_al alter 89.0 1.5 3.3E-05 52.3 8.9 86 240-329 161-263 (497)
490 PRK14530 adenylate kinase; Pro 88.9 0.29 6.2E-06 52.8 2.9 23 242-264 4-26 (215)
491 KOG3864 Uncharacterized conser 88.9 0.045 9.9E-07 55.2 -3.0 36 1227-1262 103-138 (221)
492 COG1763 MobB Molybdopterin-gua 88.9 0.26 5.7E-06 49.1 2.3 29 241-269 2-30 (161)
493 PRK05057 aroK shikimate kinase 88.9 0.31 6.7E-06 50.2 3.0 23 242-264 5-27 (172)
494 cd04121 Rab40 Rab40 subfamily. 88.9 2.5 5.4E-05 44.4 9.8 23 242-264 7-29 (189)
495 PRK15424 propionate catabolism 88.9 0.9 1.9E-05 55.6 7.3 47 214-264 219-265 (538)
496 TIGR03878 thermo_KaiC_2 KaiC d 88.9 1.4 3.1E-05 48.9 8.4 41 240-282 35-75 (259)
497 PRK08533 flagellar accessory p 88.8 1.5 3.3E-05 47.6 8.4 48 241-292 24-71 (230)
498 COG0541 Ffh Signal recognition 88.8 2.7 5.8E-05 48.4 10.3 43 223-265 79-124 (451)
499 TIGR03496 FliI_clade1 flagella 88.7 1.8 3.8E-05 51.1 9.3 85 241-329 137-236 (411)
500 PRK10820 DNA-binding transcrip 88.7 0.9 2E-05 56.1 7.3 47 214-264 204-250 (520)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-84 Score=806.26 Aligned_cols=638 Identities=29% Similarity=0.457 Sum_probs=500.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCCCcccCC
Q 042986 29 ARKEQIQADLLKWKRMLVMIKEVLDDAEEKKRTHGSVKMWLGELQNLAYDVEDLLNEFQTEALRRKLLLGNGEPATAYDQ 108 (1485)
Q Consensus 29 ~~~~~v~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lrd~ayd~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1485)
....|+++.+..|+++|..++.+++||++++.....+..|.+.++|++|++||.++.|.......+..+
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~----------- 89 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND----------- 89 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 344578889999999999999999999999988889999999999999999999999998876654432
Q ss_pred CCCcchhhhhhhccccCccccCCCCccccccccccchhhhhhccccccccccCCCchhHHHHHHHHHHHHHHHHhccccC
Q 042986 109 PSSSRTRTSKLQKLIPSCCTTFTPQSIRFDYSFDLDSAVEIEYREPLFCSIYQCPASSLHYKIKEINGRFQEIVTQKDLL 188 (1485)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~ 188 (1485)
.........+.+ |.. .+.++ .+..+..+..++-.+......+
T Consensus 90 ---~l~~~~~~~~~~--c~~-------~~~~~--------------------------~~~~~~~~~~rv~~~l~~ve~l 131 (889)
T KOG4658|consen 90 ---LLSTRSVERQRL--CLC-------GFCSK--------------------------NVSDSYKYGKRVSKVLREVESL 131 (889)
T ss_pred ---HhhhhHHHHHHH--hhh-------hhHhH--------------------------hhhhhHhHHHHHHHHHHHHHHh
Confidence 000111112222 211 11222 3333333444444444433333
Q ss_pred CCccccC--CCCcccCCCCCCccCccCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 189 DLKESSA--GRSKKSSQRLPTTSLVNEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 189 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
+....-. +.........++.+...+.+ ||.++.++++.+.|.+++ ..+++|+||||+||||||++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658|consen 132 GSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFD 204 (889)
T ss_pred ccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccc
Confidence 3222110 00011112223444444445 999999999999998763 28999999999999999999999987
Q ss_pred -cccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCC--CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccc
Q 042986 267 -VQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTID--NSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCP 343 (1485)
Q Consensus 267 -~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~ 343 (1485)
++.+||.++||+||+.|+...++++|++.++..... ..+.++++..+.+.|++|||+|||||||+. .+|+.+..+
T Consensus 205 ~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~ 282 (889)
T KOG4658|consen 205 EVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVP 282 (889)
T ss_pred hhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCC
Confidence 999999999999999999999999999998875443 334578999999999999999999999998 679999999
Q ss_pred cccCCCCcEEEEEccchhhhhh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 344 FEAGAPGSKIIVTTRNREVAAI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 344 l~~~~~gs~iivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+|....||+|++|||+..|+.. +++...++++.|+.+|||.||++.||.... ...+.++++|++||++|+|+|||+++
T Consensus 283 ~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~v 361 (889)
T KOG4658|consen 283 FPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNV 361 (889)
T ss_pred CCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHH
Confidence 9999899999999999999998 777889999999999999999999987643 23345899999999999999999999
Q ss_pred HHhHhhcCCChhHHHHHhhccccC----CCcccccchhHHHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcC
Q 042986 423 LGGLLRGKYSQCEWEGVLSSKIWD----LPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASG 498 (1485)
Q Consensus 423 ~~~~l~~~~~~~~w~~~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g 498 (1485)
+|+.|+.|.+..+|+.+.+...+. .+.+.+.|+++|++||++||+++|.||+|||+||+||.|+++.||.+|||||
T Consensus 362 iG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEG 441 (889)
T KOG4658|consen 362 LGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEG 441 (889)
T ss_pred HHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence 999999999999999999876554 3334568999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHhcccccccC--CCCCcEEEechHHHHHHHhcc-----ccEEEEeecccc--cccccc
Q 042986 499 FLDHEENENPSEDLGHDFFKELHSRSFFQQSS--NNTSRFVMHDLINDLAQWAAG-----EIYLRVEYTSEV--NKQQRF 569 (1485)
Q Consensus 499 ~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~--~~~~~~~mHdlv~~~a~~~~~-----~~~~~~~~~~~~--~~~~~~ 569 (1485)
|+++.+.+.+++++|+.|+.+|+++++++... ++...|+|||+||++|.|+++ ++...+...... ......
T Consensus 442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~ 521 (889)
T KOG4658|consen 442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKS 521 (889)
T ss_pred CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccc
Confidence 99997778899999999999999999999876 456789999999999999999 444333322110 111223
Q ss_pred cccccEEEEEcccccccccccccccccccceeeecccccCccccchhccccccc-cCCcccEEEecCCC-CCCCCCccCC
Q 042986 570 SRNLRHLSYICGEYDGVQRFGKLYDIRHLRTFLPIMLSNSSLGYLARSILPKLF-KLQRLRVFSLRGYH-NPELPDSIGN 647 (1485)
Q Consensus 570 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lp~~i~~ 647 (1485)
+..+|+++++++..... ......++++||+...... ....+...+| .++.||||||++|. +.++|++|++
T Consensus 522 ~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hhheeEEEEeccchhhc---cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 46789999988765332 2234455799998765431 1234555656 79999999999875 8999999999
Q ss_pred CCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccCCCCcccccccccCcccccccCc
Q 042986 648 LRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCN 727 (1485)
Q Consensus 648 L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 727 (1485)
|.|||||+|+++.|+.||..+++|+.|.+|++..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhh
Confidence 999999999999999999999999999999999998888887777789999999997654 1111223556666666655
Q ss_pred eEeccCC
Q 042986 728 FAVGKDS 734 (1485)
Q Consensus 728 ~~~~~~~ 734 (1485)
+.....+
T Consensus 673 ls~~~~s 679 (889)
T KOG4658|consen 673 LSITISS 679 (889)
T ss_pred heeecch
Confidence 5554333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-62 Score=645.45 Aligned_cols=471 Identities=21% Similarity=0.278 Sum_probs=305.6
Q ss_pred ccCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEE---cCc-----
Q 042986 211 VNEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCV---SDD----- 282 (1485)
Q Consensus 211 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~----- 282 (1485)
.+..++|||++.++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999888432 34689999999999999999999999 56678888877642 111
Q ss_pred ------cC-HHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEE
Q 042986 283 ------FD-VIWLTTIILRSITKQTI-DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKII 354 (1485)
Q Consensus 283 ------~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 354 (1485)
++ ...+.++++.++..... ..... ..+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 11 12345555555543321 11111 4567889999999999999876 67888876666668899999
Q ss_pred EEccchhhhhhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChh
Q 042986 355 VTTRNREVAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQC 434 (1485)
Q Consensus 355 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~ 434 (1485)
||||+++++..++..++|+++.|++++||+||+++||+.. .+++++++++++|+++|+|+|||++++|++|+++ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 9999999998877778999999999999999999999754 2456789999999999999999999999999987 789
Q ss_pred HHHHHhhccccCCCcccccchhHHHhccccCCh-hhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHH
Q 042986 435 EWEGVLSSKIWDLPEERCDIIPALRVSYYYLSA-PLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLG 513 (1485)
Q Consensus 435 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~ 513 (1485)
+|+.++++..+... ..|.++|++||++|++ ..|.||+++|+||.++.+ +.|..|+|.+....
T Consensus 406 ~W~~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------
Confidence 99999987655432 4799999999999986 599999999999988654 45778888775432
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEechHHHHHHHhccccE-------EEEeec--ccccccccccccccEEEEEccccc
Q 042986 514 HDFFKELHSRSFFQQSSNNTSRFVMHDLINDLAQWAAGEIY-------LRVEYT--SEVNKQQRFSRNLRHLSYICGEYD 584 (1485)
Q Consensus 514 ~~~~~~L~~~sl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~ 584 (1485)
+.-++.|+++||++... .++.|||++|+||++++.++. +.+... ........-.+.++++++.....+
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 12388999999998753 469999999999999986542 111000 000000111234555554332221
Q ss_pred ccc-cccccccccccceeeecccccCccccchhccccccccC-CcccEEEecCCCCCCCCCccCCCCcccEEeccCCccc
Q 042986 585 GVQ-RFGKLYDIRHLRTFLPIMLSNSSLGYLARSILPKLFKL-QRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIK 662 (1485)
Q Consensus 585 ~~~-~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~ 662 (1485)
... ....+..+++|+.|................+|..+..+ ..||.|++.++.+..+|..| .+.+|++|+|++|+++
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 110 01112333444433322110000000111222222222 23555555555555555444 2445555555555555
Q ss_pred ccChhhhccccccEeccccccccccccccccCccccceeeccCCCCcccccccccC
Q 042986 663 TLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTDSLEEMPLGIGK 718 (1485)
Q Consensus 663 ~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 718 (1485)
.+|..+..+.+|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..+++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence 5554445555555555554444444442 444455555555444434444433333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-41 Score=389.34 Aligned_cols=278 Identities=36% Similarity=0.611 Sum_probs=227.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK 298 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 298 (1485)
||.++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++||.++...+...+++.|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999997742 578999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhcCC-cCceeC
Q 042986 299 QTI---DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMGT-VPAYQL 374 (1485)
Q Consensus 299 ~~~---~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 374 (1485)
... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567888999999999999999999999887 5888888888777789999999999999877654 678999
Q ss_pred CCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhccccCCC---ccc
Q 042986 375 KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSKIWDLP---EER 451 (1485)
Q Consensus 375 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 451 (1485)
++|+.+||++||++.++... ...++.+++++++|+++|+|+||||+++|++|+.+.+..+|+.++++..+... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 22344567889999999999999999999999777677899999876444332 224
Q ss_pred ccchhHHHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCC
Q 042986 452 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHE 503 (1485)
Q Consensus 452 ~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 503 (1485)
..+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+|+|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5799999999999999999999999999999999999999999999999763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-36 Score=402.66 Aligned_cols=183 Identities=23% Similarity=0.305 Sum_probs=113.3
Q ss_pred ccccccccCCcccEEEecCCCCC-CCCCccC-CCCcccEEeccCCccc-ccChhhhccccccEecccccccccccccccc
Q 042986 617 SILPKLFKLQRLRVFSLRGYHNP-ELPDSIG-NLRNLRYLNLSGTNIK-TLPESINKLYNLHTFLLEGCWRLKKLCADMG 693 (1485)
Q Consensus 617 ~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 693 (1485)
.+++.+..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|+++ .+|. +.+.+|++|++++|.....+|..++
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh
Confidence 33444557777888888877765 6676543 7778888888877776 4453 4577778888877755456777777
Q ss_pred CccccceeeccCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCC
Q 042986 694 NLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGK 773 (1485)
Q Consensus 694 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 773 (1485)
++++|++|++++|.....+|..++++++|++|+.
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L---------------------------------------------- 195 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL---------------------------------------------- 195 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeec----------------------------------------------
Confidence 7788888888777644566666776666666621
Q ss_pred CCCceEEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCc-ccCcCCCccccCCeeEEEEecCCCCCCCC-
Q 042986 774 KNLKVLMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGT-KFPTWLGCSFFSNLVTLKFQDCSMCTSVP- 851 (1485)
Q Consensus 774 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~- 851 (1485)
+.+.. ....+..+..+++|+.|+++++... .+|..+. .+++|+.|++++|.+.+.+|
T Consensus 196 --------~~n~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 196 --------ASNQL-----------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred --------cCCCC-----------cCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccCh
Confidence 11100 0011223445566666666665543 4455544 35666666666666655555
Q ss_pred CCCCCCCCceeEecCCC
Q 042986 852 SVGQLPSLKHLEVCGMS 868 (1485)
Q Consensus 852 ~l~~l~~L~~L~L~~~~ 868 (1485)
.++.+++|+.|++++|.
T Consensus 255 ~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNK 271 (968)
T ss_pred hHhCCCCCCEEECcCCe
Confidence 46666666666666543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=399.03 Aligned_cols=221 Identities=19% Similarity=0.263 Sum_probs=152.0
Q ss_pred cccEEEEEcccccccccccccccccccceeeecccccCccccchhccccccc-cCCcccEEEecCCCCC-CCCCccCCCC
Q 042986 572 NLRHLSYICGEYDGVQRFGKLYDIRHLRTFLPIMLSNSSLGYLARSILPKLF-KLQRLRVFSLRGYHNP-ELPDSIGNLR 649 (1485)
Q Consensus 572 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~-~lp~~i~~L~ 649 (1485)
.++.+.+..+...... ...+..+++|++|.... +.+...+|..++ .+++||+|+|++|.+. .+|. +.+.
T Consensus 70 ~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~------n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSN------NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred cEEEEEecCCCccccC-ChHHhCCCCCCEEECCC------CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 4666666544322211 12344566777665422 123345666666 8888888888888875 4453 5678
Q ss_pred cccEEeccCCccc-ccChhhhccccccEeccccccccccccccccCccccceeeccCCCCcccccccccCcccccccCce
Q 042986 650 NLRYLNLSGTNIK-TLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNF 728 (1485)
Q Consensus 650 ~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 728 (1485)
+|++|+|++|.+. .+|..++++.+|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|...
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 8888888888887 678888888888888888886666788888888888888888887556677778877777777211
Q ss_pred EeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEeccCCCCCCcchhhhHHHHhccCCCC
Q 042986 729 AVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQWTCSIDSLSSREAETEKTVLEMLKPH 808 (1485)
Q Consensus 729 ~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 808 (1485)
.. .+ ....+..+..+
T Consensus 221 ~n------------------------~l-----------------------------------------~~~~p~~l~~l 235 (968)
T PLN00113 221 YN------------------------NL-----------------------------------------SGEIPYEIGGL 235 (968)
T ss_pred CC------------------------cc-----------------------------------------CCcCChhHhcC
Confidence 00 00 00112234567
Q ss_pred CCcceEEEecCCCc-ccCcCCCccccCCeeEEEEecCCCCCCCC-CCCCCCCCceeEecCCC
Q 042986 809 KNLEQICISGFRGT-KFPTWLGCSFFSNLVTLKFQDCSMCTSVP-SVGQLPSLKHLEVCGMS 868 (1485)
Q Consensus 809 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 868 (1485)
++|+.|+++++... .+|..+. .+++|+.|++++|.+.+.+| .++.+++|++|++++|.
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 78888888887654 4666665 47888888888888877776 57788888888887764
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.5e-28 Score=256.47 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=111.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEcc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGG 1306 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~ 1306 (1485)
....++++| .+..+|..+..+..+.+.-+..|+.++.+|..+..+++|..|+|++| .+..+|.+++.+..|+.|+++.
T Consensus 390 Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 390 VTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred eEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc
Confidence 445566666 34556666666666666666677777888888888888888888888 5777888888888888888888
Q ss_pred ccCccccccCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeecccccc
Q 042986 1307 CKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDER 1384 (1485)
Q Consensus 1307 c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1384 (1485)
| ....+|..+..+..|+.+-.++ ..+..++.. .....+|..||+.+|......|. ++++++|++|.++||++.
T Consensus 468 N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~---LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 468 N-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI---LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred c-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhCChh---hccccceeEEEecCCccC
Confidence 5 6777887777666666665544 455555554 23458889999988887665555 899999999999999864
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=6.2e-26 Score=264.88 Aligned_cols=266 Identities=21% Similarity=0.237 Sum_probs=177.6
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCC-CCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVL-PSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
+.+|++++++.+++. .+|.++..+.+|+.|.+.+|.. +.+|...+ ..+|+.|.+..|.. +.+|.. ...+.+|++
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~--le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNEL-EYIPPF--LEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCc--ccccceeee
Confidence 457778888877654 4567788888888888877754 45554333 36777777777773 344432 356788888
Q ss_pred EEEecCCCCccccCCCCC---CCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccc
Q 042986 1140 LDIRHCHSLTYVAGVQLP---PSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALD 1216 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~~~~~---~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~ 1216 (1485)
|++..|. +.+++...+. .++..+..+. ..+..+ +
T Consensus 315 LdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~--------------------------------n~l~~l----------p 351 (1081)
T KOG0618|consen 315 LDLQSNN-LPSLPDNFLAVLNASLNTLNVSS--------------------------------NKLSTL----------P 351 (1081)
T ss_pred eeehhcc-ccccchHHHhhhhHHHHHHhhhh--------------------------------cccccc----------c
Confidence 8888876 4333321110 0011111110 001100 0
Q ss_pred cccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCc
Q 042986 1217 HLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLS 1296 (1485)
Q Consensus 1217 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~ 1296 (1485)
. ..+.....|+.|++.+|.......+.+.+..+|+.|+|++|++.......+.++..|++|+|+|| .++.+|.....+
T Consensus 352 ~-~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 352 S-YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANL 429 (1081)
T ss_pred c-ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhh
Confidence 0 01111135999999999998888888999999999999998766555567889999999999999 688899888899
Q ss_pred cccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCC-CCcceEEeCCCCCCccccccCcCCccccccc
Q 042986 1297 AKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFP-TNLHSLEIDGMKIWKSLTESGGFHRLTSLRR 1375 (1485)
Q Consensus 1297 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 1375 (1485)
..|++|...+ +.+..+| .+..+++|+.+|++.|.. .........| ++|++||++||.... .+...|..+.++..
T Consensus 430 ~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L-~~~~l~~~~p~p~LkyLdlSGN~~l~--~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNL-SEVTLPEALPSPNLKYLDLSGNTRLV--FDHKTLKVLKSLSQ 504 (1081)
T ss_pred hhhHHHhhcC-Cceeech-hhhhcCcceEEecccchh-hhhhhhhhCCCcccceeeccCCcccc--cchhhhHHhhhhhh
Confidence 9999999888 5677888 788999999999987543 3222223345 899999999998632 11123555555555
Q ss_pred eeeccc
Q 042986 1376 LAISGC 1381 (1485)
Q Consensus 1376 L~l~~n 1381 (1485)
+++.-+
T Consensus 505 ~~i~~~ 510 (1081)
T KOG0618|consen 505 MDITLN 510 (1081)
T ss_pred eecccC
Confidence 555554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=7.2e-26 Score=239.11 Aligned_cols=105 Identities=29% Similarity=0.454 Sum_probs=87.0
Q ss_pred ccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCcccc
Q 042986 619 LPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKL 698 (1485)
Q Consensus 619 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 698 (1485)
.+++.++..|.||++.+|.+.++|.+|+.+..++.|+.++|+++.+|+.++.+..|..|+.++| .+.++|++|+.+..|
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDL 139 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhh
Confidence 3455577788888888888888888888888888888888888888888888888888888887 678888888888888
Q ss_pred ceeeccCCCCcccccccccCccccccc
Q 042986 699 HHLKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 699 ~~L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
..|+..+|+ +.++|.+++.+.+|..|
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHh
Confidence 888888777 78888888877777766
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.4e-21 Score=259.02 Aligned_cols=363 Identities=22% Similarity=0.304 Sum_probs=272.3
Q ss_pred hccccccccEEEecccC------ccccccccccCCC-CcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCcccc
Q 042986 1057 QFGLSCRLERLELRDCQ------DLVKLPKSLLSLS-SLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAW 1129 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~------~~~~l~~~l~~l~-~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 1129 (1485)
.|..+++|+.|.+.++. ....+|..+..++ +|+.|.+.+++ +..+|..+.+.+|+.|++.+|... .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~- 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLE-KLWDG- 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcccc-ccccc-
Confidence 57778888888886653 2234666777664 59999998884 567888777889999999988744 44444
Q ss_pred ccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccC
Q 042986 1130 MLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKN 1209 (1485)
Q Consensus 1130 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n 1209 (1485)
...+++|+.|++++|..++.++....+++|+.|++.+|..+..++.... .+++|+.|++.+|.+++.+....
T Consensus 630 -~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~-------~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 630 -VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ-------YLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred -cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh-------ccCCCCEEeCCCCCCcCccCCcC
Confidence 3678999999999988888888777888999999999998888775433 35569999999999887662211
Q ss_pred CCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcc-
Q 042986 1210 ELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVS- 1288 (1485)
Q Consensus 1210 ~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~- 1288 (1485)
.+ ++|+.|++++|..++.+|.. .++|+.|++++|. +..+|..+ .+++|++|++.++.....
T Consensus 702 ------------~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 702 ------------NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred ------------CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhcc
Confidence 12 46999999999888777753 4688999999887 45677654 688999999987642211
Q ss_pred -----c-CCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCcccc
Q 042986 1289 -----F-PEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLT 1362 (1485)
Q Consensus 1289 -----~-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1362 (1485)
+ +......++|+.|++++|+.+..+|..+.++++|+.|++++|+.+..+|... .+++|+.|++++|..+..+|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 1 1112234689999999999999999999999999999999999999888765 47899999999999887776
Q ss_pred ccCcCCccccccceeecccccccccccccccccccCCCCCccceeecccCCCCccccccc-cCCCCCeEeecCCCCCCCC
Q 042986 1363 ESGGFHRLTSLRRLAISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSSI-CDQNLTSLKLKNCPKLKYF 1441 (1485)
Q Consensus 1363 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~-~~~~L~~L~l~~c~~l~~l 1441 (1485)
. ..++|++|++++|.+. .+|.. ....++|+.|++.+|++|+.++... .+++|+.+++++|++|+.+
T Consensus 843 ~-----~~~nL~~L~Ls~n~i~---~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 843 D-----ISTNISDLNLSRTGIE---EVPWW-----IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred c-----cccccCEeECCCCCCc---cChHH-----HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 5 2468999999998743 33321 1235679999999999999887643 4589999999999999876
Q ss_pred CCCCCCCc--------------cceeeccCCcchH
Q 042986 1442 PKKGLPAS--------------LLRLEIEKCPLIA 1462 (1485)
Q Consensus 1442 ~~~~~~~s--------------L~~L~i~~C~~L~ 1462 (1485)
+..+.|.+ ...+.+.+|..|.
T Consensus 910 ~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 64333322 2345677887765
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-23 Score=228.54 Aligned_cols=272 Identities=17% Similarity=0.183 Sum_probs=170.6
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCC-CCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLP-SQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
++.-+.|++++|.+...-+..|.++++|+++++.+| .++.+|..+.. .+|+.|++.+|.+.+.-... ++-++.|+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~--L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEE--LSALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHH--HHhHhhhhh
Confidence 445678999999998888889999999999999998 67788987765 56999999999977765554 467899999
Q ss_pred EEEecCCCCccccCCCCCC--CCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccc
Q 042986 1140 LDIRHCHSLTYVAGVQLPP--SLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDH 1217 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~~~~~~--~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~ 1217 (1485)
||||.|. +..++...+|. ++++|+++++. +..+....+.
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~---------------------It~l~~~~F~----------------- 194 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR---------------------ITTLETGHFD----------------- 194 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeecccc---------------------cccccccccc-----------------
Confidence 9999986 66665555553 67777776654 2222222222
Q ss_pred ccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCc
Q 042986 1218 LVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLS 1296 (1485)
Q Consensus 1218 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~ 1296 (1485)
.+. +|.+|.|++|.++...+..|.+++.|+.|+|..|.+--.--..|.+|++|+.|.|..|. +..+.++ |..+
T Consensus 195 ----~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 195 ----SLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGL 268 (873)
T ss_pred ----ccc-hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeee
Confidence 222 35566666665555555556666666666666655332222345566666666666663 3333333 4455
Q ss_pred cccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccce
Q 042986 1297 AKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRL 1376 (1485)
Q Consensus 1297 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 1376 (1485)
.++++|+|..|.....-...+.++++|+.|++++|..-..-+..+.+.++|++|+|++|.+ +.+++ ..|..|..|++|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i-~~l~~-~sf~~L~~Le~L 346 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI-TRLDE-GSFRVLSQLEEL 346 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc-ccCCh-hHHHHHHHhhhh
Confidence 5666666666433322233455666666666666554444444455556666666666554 22333 345555666666
Q ss_pred eecccc
Q 042986 1377 AISGCD 1382 (1485)
Q Consensus 1377 ~l~~n~ 1382 (1485)
+|++|.
T Consensus 347 nLs~Ns 352 (873)
T KOG4194|consen 347 NLSHNS 352 (873)
T ss_pred cccccc
Confidence 666655
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-23 Score=226.95 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=145.9
Q ss_pred EeeecCCCcccc-cccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCC
Q 042986 1194 LEIHSCPSLTCL-ISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKL 1272 (1485)
Q Consensus 1194 l~i~~c~~L~~l-~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l 1272 (1485)
+.+.+.++|+.+ +..|.+. .++...|-.+. .+++|+|..|+....-..++.++++|+.|++++|.+...-++++..+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc-cccCcceeeec-ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 334444444444 4444433 22333333333 48999999998777667788899999999999999998888889999
Q ss_pred CCcCEEEeeCCCCCcccCCC-CcCccccceEEEccccCcccccc-CCCCCCccCEEEeeCCCCCccccCC---CCCCCCc
Q 042986 1273 WRLQEIDIHGCENLVSFPEG-GLLSAKLKRLVIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTED---GMFPTNL 1347 (1485)
Q Consensus 1273 ~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~L 1347 (1485)
++|++|+|++|. +..++++ +..+..|++|.|++| .+..+.. .|.++++|+.|+|++|..-..+.+. +.-.++|
T Consensus 317 qkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 317 QKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred ccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 999999999994 5566654 666789999999995 4555543 5678899999999987654444332 2235889
Q ss_pred ceEEeCCCCCCccccccCcCCccccccceeecccccccccccccccccccCCCCCccceeecccCC
Q 042986 1348 HSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFP 1413 (1485)
Q Consensus 1348 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1413 (1485)
+.|.+.||.. +.++. ..|.+|.+|++|||.+|.+..+.+-. .-|-.|+.|.+....
T Consensus 395 rkL~l~gNql-k~I~k-rAfsgl~~LE~LdL~~NaiaSIq~nA--------Fe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 395 RKLRLTGNQL-KSIPK-RAFSGLEALEHLDLGDNAIASIQPNA--------FEPMELKELVMNSSS 450 (873)
T ss_pred hheeecCcee-eecch-hhhccCcccceecCCCCcceeecccc--------cccchhhhhhhcccc
Confidence 9999999876 55555 57899999999999999865444332 233467777665533
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.7e-24 Score=247.57 Aligned_cols=100 Identities=32% Similarity=0.397 Sum_probs=89.4
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+++|+.|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 33449999999999999999999999999999999999999999999999999999988 78999999999999999999
Q ss_pred cCCCCcccccccccCccccccc
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
++|. ...+|.-+..++.+..+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHH
Confidence 9998 78888877777766665
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=7.2e-24 Score=234.90 Aligned_cols=176 Identities=19% Similarity=0.278 Sum_probs=124.0
Q ss_pred CCcccEEEecCCCCC--CCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceee
Q 042986 625 LQRLRVFSLRGYHNP--ELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLK 702 (1485)
Q Consensus 625 l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 702 (1485)
++..|-.|+++|.+. .+|.++..++.+++|.|..+++..+|+.++.|.+|++|.+++| .+..+...+..|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 455677788888864 6788888899999999999999999999999999999999998 6777777788889999988
Q ss_pred ccCCCC-cccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEE
Q 042986 703 NSDTDS-LEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLML 781 (1485)
Q Consensus 703 l~~~~~-l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 781 (1485)
+..|+. -..+|..|.+|..|.+|+... +.+
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLSh------------------------NqL------------------------- 115 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSH------------------------NQL------------------------- 115 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecch------------------------hhh-------------------------
Confidence 888762 236777777777776662211 111
Q ss_pred EeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCce
Q 042986 782 QWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKH 861 (1485)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 861 (1485)
..++..+..-+++-.|++++|.+..+|..++. .+..|-.|+|++|.+....|....+.+|++
T Consensus 116 -----------------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 116 -----------------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred -----------------hhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 12233344445666777777777777766543 466667777777776444444666666666
Q ss_pred eEecCCC
Q 042986 862 LEVCGMS 868 (1485)
Q Consensus 862 L~L~~~~ 868 (1485)
|.|++|+
T Consensus 178 L~Ls~NP 184 (1255)
T KOG0444|consen 178 LKLSNNP 184 (1255)
T ss_pred hhcCCCh
Confidence 6666654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=5.5e-22 Score=220.11 Aligned_cols=129 Identities=30% Similarity=0.389 Sum_probs=103.9
Q ss_pred ccccEEEEEcccccccccccccccccccceeeecccccCccccchhccccccccCCcccEEEecCCCCCCCCCccCCCCc
Q 042986 571 RNLRHLSYICGEYDGVQRFGKLYDIRHLRTFLPIMLSNSSLGYLARSILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRN 650 (1485)
Q Consensus 571 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 650 (1485)
++..|+++..+....+ .+.+..++.||+++.-+.. .. ...+|+++|+++.|.+|||++|.+.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L~~v--hGELs~Lp~LRsv~~R~N~---LK--nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISV--HGELSDLPRLRSVIVRDNN---LK--NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhHhh--hhhhccchhhHHHhhhccc---cc--cCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 4567777655544322 3456677888888764432 11 246788999999999999999999999999999999
Q ss_pred ccEEeccCCcccccChh-hhccccccEeccccccccccccccccCccccceeeccCCC
Q 042986 651 LRYLNLSGTNIKTLPES-INKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 651 Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 707 (1485)
+-+|+||+|+|.++|.+ +-+|..|-+|||++| .+..+|+.+..|.+|++|.|++|.
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh
Confidence 99999999999999965 468999999999998 789999999999999999999887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=2.6e-13 Score=167.14 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=62.2
Q ss_pred CcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccC
Q 042986 626 QRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSD 705 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 705 (1485)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446789999999999998886 4899999999999999863 578889999888 67777753 35777888887
Q ss_pred CCCcccccc
Q 042986 706 TDSLEEMPL 714 (1485)
Q Consensus 706 ~~~l~~~p~ 714 (1485)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 76 555553
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=3.5e-15 Score=159.08 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=77.3
Q ss_pred ccEEEecCCCCCCCC-CccCCCCcccEEeccCCccccc-ChhhhccccccEecccccccccccccc-ccCccccceeecc
Q 042986 628 LRVFSLRGYHNPELP-DSIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLKNS 704 (1485)
Q Consensus 628 Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 704 (1485)
-..++|..|.|+.+| .+|+.+++||.||||+|+|+.+ |..|.+|..|-.|-+-++..++.+|.+ |++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 345778888888887 5778888888888888888877 788888888887777775578888876 6788888888877
Q ss_pred CCCCccccccc-ccCcccccccCceEec
Q 042986 705 DTDSLEEMPLG-IGKLTCLRTLCNFAVG 731 (1485)
Q Consensus 705 ~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 731 (1485)
-|+ +..++.+ +..|.+|..|..+...
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccchh
Confidence 766 5555543 6777777777665543
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=2e-15 Score=160.95 Aligned_cols=405 Identities=14% Similarity=0.100 Sum_probs=226.3
Q ss_pred CCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCC-CCCCCCCCceeEecCCCCceeeCccccCCCCCCCCC
Q 042986 809 KNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVP-SVGQLPSLKHLEVCGMSRVKRLGSEFYGNDSPISFP 887 (1485)
Q Consensus 809 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~ 887 (1485)
+.-..+++..|.+..+|+..+. .+++|++|+|++|.+..+-| .|.++++|..|.+.+++.+++++...|++ +.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----L~ 140 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----LS 140 (498)
T ss_pred CcceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----HH
Confidence 4677888999999999887664 58999999999999987777 68999999999999988888887665543 33
Q ss_pred CccEEeeccccccccccccccCCcccCCCcccEEEeccCCCccCCCCCCCCCccEEEEecccccccccCCCCcceEEEEe
Q 042986 888 CLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLPLLDILVVQNCEELLVSVASLPALCKLRID 967 (1485)
Q Consensus 888 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 967 (1485)
.|+.|.+. .+..... ..+.+..+++|..|.+.+ +++. .++. ..+..+..++.+++.
T Consensus 141 slqrLllN---an~i~Ci--r~~al~dL~~l~lLslyD-n~~q-~i~~-----------------~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 141 SLQRLLLN---ANHINCI--RQDALRDLPSLSLLSLYD-NKIQ-SICK-----------------GTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHHHhcC---hhhhcch--hHHHHHHhhhcchhcccc-hhhh-hhcc-----------------ccccchhccchHhhh
Confidence 33333332 2211111 123455677787777777 5555 4442 123334444444444
Q ss_pred cCCCceeeccCcccccccc--ccccccccCCCcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccch
Q 042986 968 RCKKVVWRSTTDCGSQLYK--DISNQMFLGGPLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLL 1045 (1485)
Q Consensus 968 ~~~~~~~~~~~~l~~L~~l--~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~ 1045 (1485)
.|..+-.- +|..+ ++..|.+ .++++.......+.+.. +..+.. ..+.....++.+--...+
T Consensus 197 ~np~icdC------nL~wla~~~a~~~i----etsgarc~~p~rl~~~R-i~q~~a--~kf~c~~esl~s~~~~~d---- 259 (498)
T KOG4237|consen 197 QNPFICDC------NLPWLADDLAMNPI----ETSGARCVSPYRLYYKR-INQEDA--RKFLCSLESLPSRLSSED---- 259 (498)
T ss_pred cCcccccc------ccchhhhHHhhchh----hcccceecchHHHHHHH-hcccch--hhhhhhHHhHHHhhcccc----
Confidence 44322110 00000 0000000 00111111111111100 000000 000000011100000000
Q ss_pred hhhhhhhhhhhhccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC--CCCCCCEEEEecCCCCC
Q 042986 1046 FSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--LPSQLRVISIWDCGALK 1123 (1485)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~ 1123 (1485)
..+...+...|..+++|+.|+|++|.+...-+.+|.++..+++|.|..|+ +..+.... .++.|+.|++++|++..
T Consensus 260 --~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 260 --FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred --CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEE
Confidence 01122344578999999999999999999999999999999999999994 44444433 35899999999999999
Q ss_pred cCccccccCCCCCccEEEEecCCCCccc-----------------cCCCCCCCCceEEEecCCCccc---cccccCCCCC
Q 042986 1124 FLPDAWMLDNNSSLEILDIRHCHSLTYV-----------------AGVQLPPSLKQLEIYSCDNIRT---LTVEEGDHNS 1183 (1485)
Q Consensus 1124 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~-----------------~~~~~~~~L~~L~l~~~~~L~~---l~~~~~~~~~ 1183 (1485)
..|..| ..+.+|.+|++-.|+....- +.-+-|..++.+.+++...-.. -+.+.+....
T Consensus 337 ~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s 414 (498)
T KOG4237|consen 337 VAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS 414 (498)
T ss_pred Eecccc--cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCC
Confidence 888874 78899999999887744321 1112333455555544321000 0000010000
Q ss_pred --cccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCC
Q 042986 1184 --SRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCEN 1261 (1485)
Q Consensus 1184 --~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 1261 (1485)
..+.++.+.+.. .|+ ++.+ ..+ ....|....+|++.+|.+. .+|.. .+.+| .+|+++|++
T Consensus 415 ~~cP~~c~c~~tVv--RcS-------nk~l-k~l----p~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVV--RCS-------NKLL-KLL----PRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred CCCCCCcchhhhhH--hhc-------ccch-hhc----CCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCce
Confidence 011122222221 121 1111 111 2234556788889888544 34443 56677 888888887
Q ss_pred ccccCcCCCCCCCcCEEEeeCC
Q 042986 1262 LKILPHGLHKLWRLQEIDIHGC 1283 (1485)
Q Consensus 1262 ~~~l~~~l~~l~~L~~L~L~~~ 1283 (1485)
...-...|.++++|.+|.|++|
T Consensus 477 ~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 477 SSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ehhhcccccchhhhheeEEecC
Confidence 7665667778888888888764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=8.7e-13 Score=162.58 Aligned_cols=257 Identities=25% Similarity=0.314 Sum_probs=169.3
Q ss_pred cccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEE
Q 042986 1063 RLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDI 1142 (1485)
Q Consensus 1063 ~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 1142 (1485)
.-..|++++|.+. .+|..+. ++|+.|++.+|. ++.+|. .+++|++|++++|... .+|. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCccC-cccC-----cccccceeec
Confidence 4567888888665 5676554 478888888874 556664 3578888888888644 4553 2467888888
Q ss_pred ecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccC
Q 042986 1143 RHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGN 1222 (1485)
Q Consensus 1143 ~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~ 1222 (1485)
++|. +..++. .+.+|+.|+++++. ++.++. .+++|+.|++++ |.+.+ +| .
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP~----------~p~~L~~LdLS~----------N~L~~-Lp-----~ 319 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSLPV----------LPPGLQELSVSD----------NQLAS-LP-----A 319 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCCc-cccccc----------cccccceeECCC----------Ccccc-CC-----C
Confidence 8876 555543 45677777777653 444332 123355555544 32221 12 1
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
+|.+|+.|++++|... .+|. ...+|+.|+|++|.+.. +|.. .++|+.|++++|. +..+|.. ..+|+.|
T Consensus 320 lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~L 387 (788)
T PRK15387 320 LPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKEL 387 (788)
T ss_pred CcccccccccccCccc-cccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccc-cccCccc---ccccceE
Confidence 3456888888887654 3543 12478899998876554 5543 3578888888884 5567753 3578899
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
++++| .++.+|... ++|+.|++++|. +..+|. .+.+|+.|++++|.. +.+|. .+.++++|+.|+|++|+
T Consensus 388 dLs~N-~Lt~LP~l~---s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~NqL-t~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 388 IVSGN-RLTSLPVLP---SELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQL-TRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred EecCC-cccCCCCcc---cCCCEEEccCCc-CCCCCc---chhhhhhhhhccCcc-cccCh--HHhhccCCCeEECCCCC
Confidence 99885 466677533 578888998875 455664 356888899988876 45655 36788899999999987
Q ss_pred cc
Q 042986 1383 ER 1384 (1485)
Q Consensus 1383 ~~ 1384 (1485)
+.
T Consensus 457 Ls 458 (788)
T PRK15387 457 LS 458 (788)
T ss_pred CC
Confidence 53
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=4.9e-14 Score=132.28 Aligned_cols=107 Identities=30% Similarity=0.405 Sum_probs=51.9
Q ss_pred cccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccc-cccccccccCcc
Q 042986 618 ILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWR-LKKLCADMGNLI 696 (1485)
Q Consensus 618 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~-l~~lp~~i~~L~ 696 (1485)
+|+.+..+++|++|++.+|+|+++|.+|+.|++||.|++.-|++..+|..|+.++-|++|||++|.. -..+|..|..|+
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 3444444555555555555555555555555555555555555555555555555555555544421 123444444455
Q ss_pred ccceeeccCCCCcccccccccCccccccc
Q 042986 697 KLHHLKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 697 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
.|+.|+++.|. .+.+|..+|+|++||.|
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 55555555444 44445455555555444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=6.4e-14 Score=131.52 Aligned_cols=105 Identities=30% Similarity=0.403 Sum_probs=93.2
Q ss_pred cccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccc
Q 042986 620 PKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLH 699 (1485)
Q Consensus 620 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 699 (1485)
+.++.+.++..|-|++|.++.+|..|..|.+|+.|++++|+|+++|.+|+.|++|++|+++-| .+..+|.+|+.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 456677888999999999999999999999999999999999999999999999999999988 7899999999999999
Q ss_pred eeeccCCCCc-ccccccccCccccccc
Q 042986 700 HLKNSDTDSL-EEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 700 ~L~l~~~~~l-~~~p~~i~~L~~L~~L 725 (1485)
.|++.+|+.- ..+|..+..|+.|+.|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHH
Confidence 9999998732 3567667777777766
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=7.9e-12 Score=155.66 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=64.4
Q ss_pred CcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccC
Q 042986 626 QRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSD 705 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 705 (1485)
.+..+|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356788888888888887764 478899999999998887665 58899999888 5777887654 4788888888
Q ss_pred CCCcccccccc
Q 042986 706 TDSLEEMPLGI 716 (1485)
Q Consensus 706 ~~~l~~~p~~i 716 (1485)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 66676543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=5e-12 Score=159.85 Aligned_cols=235 Identities=26% Similarity=0.323 Sum_probs=153.7
Q ss_pred cCCcccEEEecCCC--CCCCCC-ccCCCCcccEEeccCC-cccccChhhhccccccEeccccccccccccccccCccccc
Q 042986 624 KLQRLRVFSLRGYH--NPELPD-SIGNLRNLRYLNLSGT-NIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLH 699 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~Ls~~-~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 699 (1485)
..+.|++|-+.+|. +..++. .|..+++||+|||++| .+..||++|++|.+||+|+++++ .+..+|.++.+|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 55679999999986 777764 4788999999999977 57799999999999999999997 7999999999999999
Q ss_pred eeeccCCCCcccccccccCcccccccCceEec-cCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCce
Q 042986 700 HLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVG-KDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKV 778 (1485)
Q Consensus 700 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 778 (1485)
+|++..+..+..+|..+..|.+|++|..+... ......+.++.+|.+|+ .+.+..... .....+..+..|..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRS 694 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHH
Confidence 99999988777776666779999999777665 33455667777777666 344321111 00111222222221
Q ss_pred EEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccC-cCCCc---cc-cCCeeEEEEecCCCCCCCCCC
Q 042986 779 LMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFP-TWLGC---SF-FSNLVTLKFQDCSMCTSVPSV 853 (1485)
Q Consensus 779 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~---~~-l~~L~~L~L~~~~~~~~l~~l 853 (1485)
+...-.. ...........+..+.+|+.|.+.++.+.+.. .|... .. ++++..+...+|.....+.+.
T Consensus 695 ~~~~l~~--------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 695 LLQSLSI--------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HhHhhhh--------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 1110000 00011123344556677888888777665432 22211 01 345555666666555555555
Q ss_pred CCCCCCceeEecCCCCceeeC
Q 042986 854 GQLPSLKHLEVCGMSRVKRLG 874 (1485)
Q Consensus 854 ~~l~~L~~L~L~~~~~l~~i~ 874 (1485)
.-.|+|+.|.+..|..++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 556777888877777666543
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=6.9e-10 Score=149.48 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=171.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCCCCC-------------CCC
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQTID-------------NSD 305 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~-------------~~~ 305 (1485)
..+++.|+|++|.||||++...... ++.++|+++.. .-++..+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5689999999999999999998852 22589999864 446667777777776422111 012
Q ss_pred HHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhhccccc-ccCCCCcEEEEEccchhhh---hhcCCcCceeCC----
Q 042986 306 LNLLQEELKKQLS--RKKFLLVLDDVWNENYNDWVDMSCPF-EAGAPGSKIIVTTRNREVA---AIMGTVPAYQLK---- 375 (1485)
Q Consensus 306 ~~~~~~~l~~~l~--~kr~LivlDdv~~~~~~~~~~l~~~l-~~~~~gs~iivTtr~~~v~---~~~~~~~~~~l~---- 375 (1485)
...+...+...+. +.+++||+||+...+.....++...+ .....+.++|||||...-. .........++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2233333333333 67999999999554322333333332 3334567888999984211 111112245555
Q ss_pred CCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhccccCCCc-ccccc
Q 042986 376 NLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSKIWDLPE-ERCDI 454 (1485)
Q Consensus 376 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-~~~~i 454 (1485)
+|+.+|+.++|....... . -.+...+|.+.|+|.|+++..++..+........ ... +.+.. ....+
T Consensus 185 ~f~~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~----~~~~~~~~~~~ 251 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSARQNNSSLH--DSA----RRLAGINASHL 251 (903)
T ss_pred CCCHHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhh----HhhcCCCchhH
Confidence 999999999998754211 1 1345678999999999999998877754422100 001 11111 11234
Q ss_pred hhHHHh-ccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHhcccccc-cCCC
Q 042986 455 IPALRV-SYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQ-SSNN 532 (1485)
Q Consensus 455 ~~~l~~-sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~-~~~~ 532 (1485)
...+.- .|+.||++.+..+...|+++ .|+. .+.. .+.. .+.+...+++|.+++++.. .+.+
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~-----~l~~--------~~~~~~~L~~l~~~~l~~~~~~~~ 314 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIV-----RVTG--------EENGQMRLEELERQGLFIQRMDDS 314 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHH-----HHcC--------CCcHHHHHHHHHHCCCeeEeecCC
Confidence 444433 37899999999999999986 3332 2222 1111 1235678999999999753 3344
Q ss_pred CCcEEEechHHHHHHHhc
Q 042986 533 TSRFVMHDLINDLAQWAA 550 (1485)
Q Consensus 533 ~~~~~mHdlv~~~a~~~~ 550 (1485)
...|++|++++++.+...
T Consensus 315 ~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCEEehhHHHHHHHHHHH
Confidence 457899999999998654
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=2.5e-11 Score=151.23 Aligned_cols=96 Identities=23% Similarity=0.386 Sum_probs=62.3
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEIL 1140 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 1140 (1485)
+++|+.|+|++|.+. .+|..+. ++|+.|++++|. ++.+|.. ++++|+.|++++|... .+|..+ ..+|+.|
T Consensus 198 p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-LTSIPAT-LPDTIQEMELSINRIT-ELPERL----PSALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-cccCChh-hhccccEEECcCCccC-cCChhH----hCCCCEE
Confidence 356888888888765 4565443 578888888874 4566643 3467888888888754 455542 2468888
Q ss_pred EEecCCCCccccCCCCCCCCceEEEecC
Q 042986 1141 DIRHCHSLTYVAGVQLPPSLKQLEIYSC 1168 (1485)
Q Consensus 1141 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 1168 (1485)
++++|. ++.++. .++++|+.|++++|
T Consensus 268 ~Ls~N~-L~~LP~-~l~~sL~~L~Ls~N 293 (754)
T PRK15370 268 DLFHNK-ISCLPE-NLPEELRYLSVYDN 293 (754)
T ss_pred ECcCCc-cCcccc-ccCCCCcEEECCCC
Confidence 888664 444443 34456777766665
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=2.6e-09 Score=128.14 Aligned_cols=301 Identities=13% Similarity=0.073 Sum_probs=178.2
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
.+..++||++++++|...+...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 35679999999999999985431 1233455789999999999999999986543332234566766666677888999
Q ss_pred HHHhhcCCCC--CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHhhcccccccCCCCcE--EEEEccchh
Q 042986 292 ILRSITKQTI--DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNEN----YNDWVDMSCPFEAGAPGSK--IIVTTRNRE 361 (1485)
Q Consensus 292 il~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~~ 361 (1485)
++.++..... ...+.+++.+.+.+.+. +++.+||+|+++.-. ...+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9999875321 23356667777777765 456899999996532 1223333322221 22333 566666544
Q ss_pred hhhhcC-------CcCceeCCCCChhhHHHHHHhcccCC--CCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHh--h--
Q 042986 362 VAAIMG-------TVPAYQLKNLSIDDCLSVFAQHSLGT--RDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLL--R-- 428 (1485)
Q Consensus 362 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l--~-- 428 (1485)
+..... ....+.+.+.+.++..+++..++... ...-.+..++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 333221 12457899999999999998875321 1112233344445544444566788887764432 1
Q ss_pred -cC--CChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccc-cCC-CcccChHHHHHH--HHHcCCCC
Q 042986 429 -GK--YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSL-FPK-DYEFEEEEIVLL--WCASGFLD 501 (1485)
Q Consensus 429 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~-fp~-~~~i~~~~li~~--w~a~g~i~ 501 (1485)
++ -+.++...+.+.. -.....-.+..||.+.|..+..++- ... ...+...++... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1345555555432 0122344578999988776655442 221 133555555432 33322211
Q ss_pred CCCCCCChhhHHHHHHHHHHhccccccc
Q 042986 502 HEENENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 502 ~~~~~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
. ........+|+.+|...|+++..
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11123456789999999998754
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=4.3e-08 Score=116.40 Aligned_cols=301 Identities=11% Similarity=0.050 Sum_probs=172.4
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-ccc---CeeEEEEEcCccCHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYF---DLKAWTCVSDDFDVIWL 288 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~~ 288 (1485)
+..++||++++++|..++...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3478999999999999986421 12334578899999999999999999854211 111 13567777776677889
Q ss_pred HHHHHHhhcC---CCC-CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC---hhhHhhccccc-ccCC--CCcEEEEE
Q 042986 289 TTIILRSITK---QTI-DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNEN---YNDWVDMSCPF-EAGA--PGSKIIVT 356 (1485)
Q Consensus 289 ~~~il~~l~~---~~~-~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivT 356 (1485)
+..|++++.. ... ...+.++....+.+.+. +++++||||+++.-. ......+.... .... ..-.+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 9999998842 211 12244455555555553 568899999996541 11122222211 1111 22345555
Q ss_pred ccchhhhhhcC-------CcCceeCCCCChhhHHHHHHhcccC-CCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHhHh
Q 042986 357 TRNREVAAIMG-------TVPAYQLKNLSIDDCLSVFAQHSLG-TRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGGLL 427 (1485)
Q Consensus 357 tr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~l 427 (1485)
|........+. ....+.+.+.+.++..+++..++-. .....-.++..+...+++....|.| .|+.++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55443322111 1245889999999999999887631 1111122333445556777777887 4444332221
Q ss_pred --h---cC--CChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhcccccc--CCCcccChHHHHHHH--HH
Q 042986 428 --R---GK--YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLF--PKDYEFEEEEIVLLW--CA 496 (1485)
Q Consensus 428 --~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~li~~w--~a 496 (1485)
. +. -+.++.+.+.+.. -.....-++..||.+.|..+..++.. .++..+...++...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 1233444433321 01223345678898888666554421 133446666666633 12
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHHHhccccccc
Q 042986 497 SGFLDHEENENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 497 ~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
+.+ . .....+.....++..|...|++...
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 1 1112346678889999999999864
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=1.9e-08 Score=113.79 Aligned_cols=182 Identities=19% Similarity=0.139 Sum_probs=113.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH----HH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELK----KQ 316 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~----~~ 316 (1485)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..++++.|...++..... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 3588999999999999999999865422 11 22333 333457778888888887654332 22222333333 22
Q ss_pred -hCCCcEEEEEeCCCCCChhhHhhcccccc---cCCCCcEEEEEccchhhhhhcC----------CcCceeCCCCChhhH
Q 042986 317 -LSRKKFLLVLDDVWNENYNDWVDMSCPFE---AGAPGSKIIVTTRNREVAAIMG----------TVPAYQLKNLSIDDC 382 (1485)
Q Consensus 317 -l~~kr~LivlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 382 (1485)
..++++++|+||++......++.+..... .......|++|.... ....+. ....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 36788999999998876555655432211 112223445555432 221111 123578999999999
Q ss_pred HHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHh
Q 042986 383 LSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLL 427 (1485)
Q Consensus 383 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 427 (1485)
.+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887654322111111224788899999999999999888765
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=5.2e-11 Score=139.24 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred cccceEEEccccCc----cccccCCCCCCccCEEEeeCCCCCc----cccCCC-CCCCCcceEEeCCCCCCc--cccccC
Q 042986 1297 AKLKRLVIGGCKKL----EALPLGMHHLTCLQHLTIGGVPSLL----CFTEDG-MFPTNLHSLEIDGMKIWK--SLTESG 1365 (1485)
Q Consensus 1297 ~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~~~~l~----~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~ 1365 (1485)
++|++|++++|... ..++..+..+++|++|++++|+.-. .+.... ...+.|++|++++|.... ......
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 35555555554321 1122234455666666666654221 000000 012567777777775531 100011
Q ss_pred cCCccccccceeeccccc
Q 042986 1366 GFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1366 ~~~~l~~L~~L~l~~n~~ 1383 (1485)
.+..+++|+++++++|..
T Consensus 273 ~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 273 VLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHhcCCCccEEECCCCCC
Confidence 244557788888888764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.2e-10 Score=136.01 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=27.6
Q ss_pred ccEEEEeccCCcc----hHHhhcccCCCccEEEeecCCCcc----ccCcCCCCCCCcCEEEeeCCC
Q 042986 1227 LKFLSIWHCSRLE----SIVERLDNNTSLEVIEIVSCENLK----ILPHGLHKLWRLQEIDIHGCE 1284 (1485)
Q Consensus 1227 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~ 1284 (1485)
|++|++++|...+ .++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|+
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 5555555554432 222333444555666665554432 122334445555555555553
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.85 E-value=3.9e-09 Score=117.15 Aligned_cols=195 Identities=18% Similarity=0.174 Sum_probs=97.9
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH---
Q 042986 216 VYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII--- 292 (1485)
Q Consensus 216 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i--- 292 (1485)
||||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..+.. .+ ..+|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhh-hHHHHHHHH
Confidence 689999999999998653 34788999999999999999999854221 22 3444444333222 112221
Q ss_pred -------HHhh----cCCCC------CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC------hhhHhhccccccc-
Q 042986 293 -------LRSI----TKQTI------DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNEN------YNDWVDMSCPFEA- 346 (1485)
Q Consensus 293 -------l~~l----~~~~~------~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~------~~~~~~l~~~l~~- 346 (1485)
.+.+ ..... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1111 11110 01111222222323332 345999999995432 0111122222222
Q ss_pred -CCCCcEEEEEccchhhhhh--------cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 347 -GAPGSKIIVTTRNREVAAI--------MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 347 -~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
....-.+|+++....+... .+....+.+++++.+++++++...+-...+ - +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIK--L-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhc--c-cCCHHHHHHHHHHhCCCH
Confidence 1223344444444433322 122345999999999999999986432211 1 112455688999999999
Q ss_pred hHHHH
Q 042986 418 LAAKT 422 (1485)
Q Consensus 418 Lai~~ 422 (1485)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88864
No 31
>PF05729 NACHT: NACHT domain
Probab=98.78 E-value=2.2e-08 Score=104.14 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=88.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccc----cCeeEEEEEcCccCHH---HHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYY----FDLKAWTCVSDDFDVI---WLTTIILRSITKQTIDNSDLNLLQEELK 314 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 314 (1485)
+++.|+|.+|+||||+++.++........ +...+|+...+..+.. .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999999986543332 4456677666543322 23333333332111 11111 111
Q ss_pred -HHhCCCcEEEEEeCCCCCChh-------hHhhccccccc--CCCCcEEEEEccchhh---hhhcCCcCceeCCCCChhh
Q 042986 315 -KQLSRKKFLLVLDDVWNENYN-------DWVDMSCPFEA--GAPGSKIIVTTRNREV---AAIMGTVPAYQLKNLSIDD 381 (1485)
Q Consensus 315 -~~l~~kr~LivlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 381 (1485)
..-+.++++||+|++++.... .+..+...+.. ..++.+++||+|.... .........+++.++++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 122578999999999664321 12222222222 2568999999998766 3334444679999999999
Q ss_pred HHHHHHhc
Q 042986 382 CLSVFAQH 389 (1485)
Q Consensus 382 ~~~lf~~~ 389 (1485)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99998765
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.77 E-value=2.6e-07 Score=106.36 Aligned_cols=277 Identities=15% Similarity=0.126 Sum_probs=149.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+|||+++.++++..++..... .......+.++|++|+|||+||+.+.+.... .+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchh-HHHHH
Confidence 4689999999999888854211 1233556789999999999999999985432 21 1111111111112 22223
Q ss_pred HhhcCCCC-CCCCH----HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhcC-
Q 042986 294 RSITKQTI-DNSDL----NLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMG- 367 (1485)
Q Consensus 294 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 367 (1485)
..+..... -.++. ...++.+...+.+.+..+|+|+..... .| ...+ .+..-|.+||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 33322110 00111 122344555666666677777664431 11 1112 22455666777654443321
Q ss_pred -CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhccccC
Q 042986 368 -TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSKIWD 446 (1485)
Q Consensus 368 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 446 (1485)
....+++++++.++..+++.+.+..... ..+ .+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1246789999999999999987743221 111 3566789999999996554444322 11110000000
Q ss_pred CCc-ccccchhHHHhccccCChhhHhhhc-cccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHH-HHHhc
Q 042986 447 LPE-ERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFK-ELHSR 523 (1485)
Q Consensus 447 ~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~~ 523 (1485)
... .-......+...|..++.+.+..+. ..+.++.+ .+..+.+.... | .....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHc
Confidence 100 0012233356678888888777665 45666543 34443333221 1 12244666677 69999
Q ss_pred ccccccC
Q 042986 524 SFFQQSS 530 (1485)
Q Consensus 524 sl~~~~~ 530 (1485)
+|++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997543
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.76 E-value=1e-07 Score=110.07 Aligned_cols=277 Identities=16% Similarity=0.148 Sum_probs=149.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+|+|+++.++.+..++..... .......+.++|++|+||||+|+.+.+.... .+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHHH
Confidence 5699999999999888753211 1234567789999999999999999985432 11 111111 111122223333
Q ss_pred HhhcCCCC-CCCCH----HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhcC-
Q 042986 294 RSITKQTI-DNSDL----NLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMG- 367 (1485)
Q Consensus 294 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 367 (1485)
..+..... -.++. ....+.+...+.+.+..+|+|+..... .+...+ .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 33321110 00111 112233444455555666666543321 111111 12445666777554433221
Q ss_pred -CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhccccC
Q 042986 368 -TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSKIWD 446 (1485)
Q Consensus 368 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 446 (1485)
....+++++++.++..+++.+.+...+. .. -.+.+..|++.|+|.|-.+..+...+ ..|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CC
Confidence 1246899999999999999988754322 11 13567889999999995443333222 122221110 01
Q ss_pred CCc-ccccchhHHHhccccCChhhHhhhc-cccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHH-HHHhc
Q 042986 447 LPE-ERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFK-ELHSR 523 (1485)
Q Consensus 447 ~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~~ 523 (1485)
... .-......+...|..|+...+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhHHHHHc
Confidence 110 0123344556777888887777775 56667655 45555543322 1 11234555566 89999
Q ss_pred ccccccC
Q 042986 524 SFFQQSS 530 (1485)
Q Consensus 524 sl~~~~~ 530 (1485)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997543
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.71 E-value=6e-08 Score=109.56 Aligned_cols=64 Identities=28% Similarity=0.573 Sum_probs=37.1
Q ss_pred cccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccccCccccc
Q 042986 1245 LDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALP 1314 (1485)
Q Consensus 1245 ~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~ 1314 (1485)
+..+.+++.|++++| .+..+|. + .++|++|++++|..+..+|..+ .++|+.|++++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 445667777777776 4444551 1 2356777777666666666432 2466666666665555554
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.67 E-value=7.5e-07 Score=106.80 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=182.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-cCHHHHHHHHHHhhcCCCCC
Q 042986 224 RDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-FDVIWLTTIILRSITKQTID 302 (1485)
Q Consensus 224 ~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~ 302 (1485)
.++++.|.. ..+.+++.|..++|.||||++.+...... .=..+.|.+.++. -++.++.+.++..+..-...
T Consensus 25 ~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 445555633 34689999999999999999999875211 1235899998765 57888888888888643221
Q ss_pred -------------CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHh-hcccccccCCCCcEEEEEccchhh---h
Q 042986 303 -------------NSDLNLLQEELKKQLS--RKKFLLVLDDVWNENYNDWV-DMSCPFEAGAPGSKIIVTTRNREV---A 363 (1485)
Q Consensus 303 -------------~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTtr~~~v---~ 363 (1485)
..+...+...+...+. .++..+||||.--....... .+...+....++-.+|||||+..- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2334445555555444 36899999998443222222 222233445668899999998642 2
Q ss_pred hhcCCcCceeC----CCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHH
Q 042986 364 AIMGTVPAYQL----KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGV 439 (1485)
Q Consensus 364 ~~~~~~~~~~l----~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~ 439 (1485)
..--.....++ =.++.+|+-++|...... +-.+.-+..+.+...|-+-|+..++=.+++..+.+.--..
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 21111122232 358899999999886411 1123456778999999999999998888744333222221
Q ss_pred hhccccCCCcccccchhH-HHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHH
Q 042986 440 LSSKIWDLPEERCDIIPA-LRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFK 518 (1485)
Q Consensus 440 l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~ 518 (1485)
+. .....+.+- ..--++.||+++|.-++-||+++.= -..|+..- +-++.|..+++
T Consensus 250 Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe 305 (894)
T COG2909 250 LS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLE 305 (894)
T ss_pred cc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHH
Confidence 21 111111111 1122588999999999999998531 23333322 12355778899
Q ss_pred HHHhccccc-ccCCCCCcEEEechHHHHHHHh
Q 042986 519 ELHSRSFFQ-QSSNNTSRFVMHDLINDLAQWA 549 (1485)
Q Consensus 519 ~L~~~sl~~-~~~~~~~~~~mHdlv~~~a~~~ 549 (1485)
+|.++++|- +-++....|+.|.++.||.+.-
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 999999975 4456677899999999998754
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=1.5e-06 Score=104.79 Aligned_cols=300 Identities=12% Similarity=0.104 Sum_probs=165.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---ccccC--eeEEEEEcCccCHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---QYYFD--LKAWTCVSDDFDVIW 287 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~ 287 (1485)
+..+.|||+++++|...|...-. +.....++.|+|++|.|||+.++.|.+..+. +.... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999998864321 2233467889999999999999999875421 11111 356677666667888
Q ss_pred HHHHHHHhhcCCCC-CCCCHHHHHHHHHHHh-C--CCcEEEEEeCCCCCC---hhhHhhcccccccCCCCcEEEE--Ecc
Q 042986 288 LTTIILRSITKQTI-DNSDLNLLQEELKKQL-S--RKKFLLVLDDVWNEN---YNDWVDMSCPFEAGAPGSKIIV--TTR 358 (1485)
Q Consensus 288 ~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l-~--~kr~LivlDdv~~~~---~~~~~~l~~~l~~~~~gs~iiv--Ttr 358 (1485)
+...|.+++..... ......+..+.+...+ . +...+||||+|+.-. ++.+..+... + ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecC
Confidence 88888888854432 2223333444444443 2 234699999996432 1112222221 1 124566554 343
Q ss_pred chhhh--------hhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcC
Q 042986 359 NREVA--------AIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGK 430 (1485)
Q Consensus 359 ~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~ 430 (1485)
..+.. ..++ ...+...|.+.++..+++..++-.....-.+..++-+|+.++...|-.-.||.++-.+...+
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 32221 2222 23467799999999999999875332223344455566666655566677777765554332
Q ss_pred CC----hhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccc-cC--CCcccChHHHHHHH--HHc--C-
Q 042986 431 YS----QCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSL-FP--KDYEFEEEEIVLLW--CAS--G- 498 (1485)
Q Consensus 431 ~~----~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~-fp--~~~~i~~~~li~~w--~a~--g- 498 (1485)
.. .++-+.+.... -...+.-....||.+.|..+..+.. .- ....++..++.... +++ |
T Consensus 990 egskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 11 22222222211 0111222346788887765543332 11 12235555444432 233 1
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHhcccccccC
Q 042986 499 FLDHEENENPSEDLGHDFFKELHSRSFFQQSS 530 (1485)
Q Consensus 499 ~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~ 530 (1485)
.+.. ....+ ...+|+.+|...|++-...
T Consensus 1060 ~iGv---~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1060 YIGM---CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hcCC---CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1111 11122 6677888998888887543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=3.5e-09 Score=119.29 Aligned_cols=179 Identities=23% Similarity=0.318 Sum_probs=130.1
Q ss_pred ccccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCcc
Q 042986 617 SILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLI 696 (1485)
Q Consensus 617 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 696 (1485)
.+|..+..|..|..|.|..|.+..+|..+++|..|.||||+.|+++.+|..++.|+ |+.|.+++| +++.+|..|+.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 45556667777888888888888899999999999999999999999988888765 888888887 7888899999888
Q ss_pred ccceeeccCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCC
Q 042986 697 KLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNL 776 (1485)
Q Consensus 697 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 776 (1485)
.|.+|+.+.|+ +..+|..++.|.+|+.|....+. +.
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~------------------------l~------------------- 202 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH------------------------LE------------------- 202 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh------------------------hh-------------------
Confidence 89999998888 88888888888888877221110 00
Q ss_pred ceEEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCC---CC
Q 042986 777 KVLMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVP---SV 853 (1485)
Q Consensus 777 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~l 853 (1485)
..++.+.. -.|..|+++.|+...+|-.+. .++.|++|.|.+|.+..... .-
T Consensus 203 -----------------------~lp~El~~-LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 203 -----------------------DLPEELCS-LPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred -----------------------hCCHHHhC-CceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhc
Confidence 01111111 136677788888888887665 47888888888888754222 23
Q ss_pred CCCCCCceeEecCC
Q 042986 854 GQLPSLKHLEVCGM 867 (1485)
Q Consensus 854 ~~l~~L~~L~L~~~ 867 (1485)
|...-.++|+..-|
T Consensus 257 GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 257 GKVHIFKYLSTQAC 270 (722)
T ss_pred cceeeeeeecchhc
Confidence 44555566666655
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=1.4e-09 Score=118.24 Aligned_cols=281 Identities=17% Similarity=0.252 Sum_probs=157.1
Q ss_pred cccEEEecccCcccc--ccccccCCCCcceEeeccCCCccccCC---CCCCCCCCEEEEecCCCCCcCccccccCCCCCc
Q 042986 1063 RLERLELRDCQDLVK--LPKSLLSLSSLTEIRIHNCSSLVSFPD---AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSL 1137 (1485)
Q Consensus 1063 ~L~~L~Ls~~~~~~~--l~~~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 1137 (1485)
.|+.|.+.+|.-.+. +-....++++++.|.+.+|..++...- ..+++.|+.|++..|..++...-......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 588888888876644 334567888899998888876553321 124577788888877766654333234567888
Q ss_pred cEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccc
Q 042986 1138 EILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDH 1217 (1485)
Q Consensus 1138 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~ 1217 (1485)
++|++++|+.++.-. ++. ...+|.. ++.+..++|..+..= .+..
T Consensus 219 ~~lNlSwc~qi~~~g-------v~~-~~rG~~~--------------------l~~~~~kGC~e~~le--------~l~~ 262 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNG-------VQA-LQRGCKE--------------------LEKLSLKGCLELELE--------ALLK 262 (483)
T ss_pred HHhhhccCchhhcCc-------chH-Hhccchh--------------------hhhhhhcccccccHH--------HHHH
Confidence 888888887665411 000 0122222 122222233322100 0000
Q ss_pred ccccCCcccccEEEEeccCCcchH--HhhcccCCCccEEEeecCCCccccC--cCCCCCCCcCEEEeeCCCCCcccC--C
Q 042986 1218 LVVGNLPQALKFLSIWHCSRLESI--VERLDNNTSLEVIEIVSCENLKILP--HGLHKLWRLQEIDIHGCENLVSFP--E 1291 (1485)
Q Consensus 1218 ~~~~~l~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~l~--~~l~~l~~L~~L~L~~~~~l~~~p--~ 1291 (1485)
. .+.. .-+.++++..|..++.. ...-..+..|+.|+.++|...+..+ .--.+.++|+.|-+++|...+... .
T Consensus 263 ~-~~~~-~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 263 A-AAYC-LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred H-hccC-hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 0 0001 12555556666554432 2333556777777777777655332 223456778888888877554322 1
Q ss_pred CCcCccccceEEEccccCcccc--ccCCCCCCccCEEEeeCCCCCccc-----cCCCCCCCCcceEEeCCCCCCcccccc
Q 042986 1292 GGLLSAKLKRLVIGGCKKLEAL--PLGMHHLTCLQHLTIGGVPSLLCF-----TEDGMFPTNLHSLEIDGMKIWKSLTES 1364 (1485)
Q Consensus 1292 ~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 1364 (1485)
-..+++.|+.+++.+|..+... -..-.+++.|+.+.++.|..+++. .........|..+.+++|+.++.-..
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L- 419 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL- 419 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-
Confidence 1334567777777777655432 222346777888888777665543 22222346677788888877664332
Q ss_pred CcCCccccccceeecccc
Q 042986 1365 GGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1365 ~~~~~l~~L~~L~l~~n~ 1382 (1485)
..+..+++|+.+++-+|.
T Consensus 420 e~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQ 437 (483)
T ss_pred HHHhhCcccceeeeechh
Confidence 235566677777777665
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.1e-08 Score=111.97 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=89.9
Q ss_pred CCCcceEEEEecCCCceee---ccCccccccccccccccccCC----CcccCCCCCceEEeccCCCccccccchhhhhhh
Q 042986 957 SLPALCKLRIDRCKKVVWR---STTDCGSQLYKDISNQMFLGG----PLKLHLPKLEELDISIIDELTYIWQNETQLLRD 1029 (1485)
Q Consensus 957 ~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~l~ls~n~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 1029 (1485)
++.+|+++.++++..-... -...|++++.||+|.|-+... .....+|+|+.|+++.+.... .|..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s------- 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISS------- 190 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-Cccc-------
Confidence 3445555555554422111 234566666667777666554 233467777777777543221 1110
Q ss_pred hhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCcc-ccccccccCCCCcceEeeccCCCcc-ccCCCCC
Q 042986 1030 IVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDL-VKLPKSLLSLSSLTEIRIHNCSSLV-SFPDAVL 1107 (1485)
Q Consensus 1030 ~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~-~~l~~~l~~l~~L~~L~L~~~~~l~-~~~~~~~ 1107 (1485)
..-..++.|+.|.|+.|.+. ..+-..+..+|+|+.|++..|.... ...+...
T Consensus 191 --------------------------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i 244 (505)
T KOG3207|consen 191 --------------------------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI 244 (505)
T ss_pred --------------------------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh
Confidence 01124567888888888876 3344566778888888888884322 1122224
Q ss_pred CCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCC
Q 042986 1108 PSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCH 1146 (1485)
Q Consensus 1108 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 1146 (1485)
+..|++|+|++|+.+..-... ....++.|+.|+++.|.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGY-KVGTLPGLNQLNLSSTG 282 (505)
T ss_pred hhHHhhccccCCccccccccc-ccccccchhhhhccccC
Confidence 567778888877766554222 24677777777777765
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=1.8e-08 Score=101.67 Aligned_cols=81 Identities=28% Similarity=0.431 Sum_probs=27.5
Q ss_pred cCCcccEEEecCCCCCCCCCccC-CCCcccEEeccCCcccccChhhhccccccEecccccccccccccccc-Ccccccee
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIG-NLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMG-NLIKLHHL 701 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L 701 (1485)
+...+|.|+|++|.|+.+. .++ .+.+|+.|||++|.|+.++ .+..|.+|++|++++| .+..++..+. .+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 4556889999999988874 565 5788999999999998885 4778899999999988 6777765553 68888888
Q ss_pred eccCCC
Q 042986 702 KNSDTD 707 (1485)
Q Consensus 702 ~l~~~~ 707 (1485)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 888876
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=7.1e-07 Score=97.90 Aligned_cols=170 Identities=23% Similarity=0.270 Sum_probs=100.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
...++|-+..+.+++ ..+.+.-...||++|+||||||+.+.. .....| ..++-..+-.+-++++
T Consensus 29 Q~HLlg~~~~lrr~v---------~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAV---------EAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHH---------hcCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 344555555554443 223566777999999999999999998 344444 3333333322223333
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE--Eccchhh---hhhcC
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV--TTRNREV---AAIMG 367 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~ 367 (1485)
+++. -+....++|.+|++|.|..-+..+-+.+ +|.-..|.-|+| ||.++.. .....
T Consensus 93 ~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 3321 1223448899999999966544444434 444566877777 6666542 12223
Q ss_pred CcCceeCCCCChhhHHHHHHhcccCCCC-CC-CChh-HHHHHHHHHHHcCCCh
Q 042986 368 TVPAYQLKNLSIDDCLSVFAQHSLGTRD-FS-SNKS-LEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 368 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~-~~~~-~~~~~~~i~~~c~g~P 417 (1485)
...++.+++|+.++..+++.+-+..... .. .... -++.-.-++..++|--
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 4578999999999999999883322111 11 0111 1345666888888864
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=1.3e-09 Score=118.53 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCcccc---CCCCCCCCceEEEecCCCccccc
Q 042986 1110 QLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVA---GVQLPPSLKQLEIYSCDNIRTLT 1175 (1485)
Q Consensus 1110 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~L~~l~ 1175 (1485)
.|+.|.+++|.....-+-.-+..+++++++|.+.+|..+++.. ....++.|+.+.+..|.+++...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 3555555555544443333334667777777777777665432 12345556666666655555443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=7.7e-09 Score=116.63 Aligned_cols=173 Identities=22% Similarity=0.209 Sum_probs=138.9
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+..-...||+.|.+.++|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+.| .+..+|..+..|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 45556678999999999999999999999999999999999999999999999999998 7899999998875 899999
Q ss_pred cCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEe
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQW 783 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 783 (1485)
++|+ ++.+|.+|+.+..|..|+...+.
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~ne---------------------------------------------------- 177 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNE---------------------------------------------------- 177 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhh----------------------------------------------------
Confidence 9888 99999999977777766321111
Q ss_pred ccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCceeE
Q 042986 784 TCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHLE 863 (1485)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 863 (1485)
....+..+..+..|+.|.+..+....+|..+.+ -.|.+|+++.|++....-.+.+|..|++|-
T Consensus 178 --------------i~slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 178 --------------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred --------------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCceeecchhhhhhhhheeee
Confidence 011122234445677777778888888887752 468999999998855444799999999999
Q ss_pred ecCCC
Q 042986 864 VCGMS 868 (1485)
Q Consensus 864 L~~~~ 868 (1485)
|.+|+
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 99876
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=7.2e-08 Score=115.87 Aligned_cols=102 Identities=31% Similarity=0.466 Sum_probs=91.3
Q ss_pred cccCCcccEEEecCCCCCCCCCccCCCC-cccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccce
Q 042986 622 LFKLQRLRVFSLRGYHNPELPDSIGNLR-NLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700 (1485)
Q Consensus 622 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 700 (1485)
+..+..+..|++.++.+..+|.....+. +|++|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3466789999999999999999888885 999999999999999988999999999999999 78899988889999999
Q ss_pred eeccCCCCcccccccccCccccccc
Q 042986 701 LKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 701 L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
|++++|. +..+|..++.+..|++|
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhh
Confidence 9999998 88999877777777777
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.4e-08 Score=109.49 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=77.8
Q ss_pred ccEEEEeccCCcc--hHHhhcccCCCccEEEeecCCCccccCcC-CCCCCCcCEEEeeCCCCC-cccCCCCcCccccceE
Q 042986 1227 LKFLSIWHCSRLE--SIVERLDNNTSLEVIEIVSCENLKILPHG-LHKLWRLQEIDIHGCENL-VSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1227 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~L~L~~~~~l-~~~p~~~~~~~~L~~L 1302 (1485)
++.|+|++|-... .+......+++|+.|+|+.|...--..+. -..++.|+.|.|++|... ..+......+|+|+.|
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L 227 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL 227 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence 6777777664332 23344556677777777766554322211 123566666666666433 1122223345666666
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCccc--cCCCCCCCCcceEEeCCCCCCcc-cccc---CcCCccccccce
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCF--TEDGMFPTNLHSLEIDGMKIWKS-LTES---GGFHRLTSLRRL 1376 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~~-~~~~---~~~~~l~~L~~L 1376 (1485)
++.+|+.+.........+..|++|+|++|+.+..- +..+. .++|..|+++.|.+-.. .++. .-...+++|++|
T Consensus 228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 228 YLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred hhhcccccceecchhhhhhHHhhccccCCccccccccccccc-ccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 66665433333333344556666666666554321 22221 34566666666554331 1110 012445666666
Q ss_pred eeccccc
Q 042986 1377 AISGCDE 1383 (1485)
Q Consensus 1377 ~l~~n~~ 1383 (1485)
++..|++
T Consensus 307 ~i~~N~I 313 (505)
T KOG3207|consen 307 NISENNI 313 (505)
T ss_pred ecccCcc
Confidence 6666654
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=2e-06 Score=110.39 Aligned_cols=288 Identities=14% Similarity=0.164 Sum_probs=162.1
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEEEEEcCcc---CHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAWTCVSDDF---DVIWLTT 290 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~---~~~~~~~ 290 (1485)
+++||+.+++.|...+..- ..+...|+.|.|..|||||+++++|.....-+ +.|-.-.+-....+. .....++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 3689999999999998654 34556799999999999999999999854322 222111111111111 1223444
Q ss_pred HHHHhhcCCCC-----------------------------------------CCCCHHH-----HHHHHHHHh-CCCcEE
Q 042986 291 IILRSITKQTI-----------------------------------------DNSDLNL-----LQEELKKQL-SRKKFL 323 (1485)
Q Consensus 291 ~il~~l~~~~~-----------------------------------------~~~~~~~-----~~~~l~~~l-~~kr~L 323 (1485)
++..++..... .....+. .+..+.... +.|+.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 44444311000 0000011 112222333 346999
Q ss_pred EEEeCCCCCChhhHhhcccccccCC-----CCcEEEEEccchh----hhhhcCCcCceeCCCCChhhHHHHHHhcccCCC
Q 042986 324 LVLDDVWNENYNDWVDMSCPFEAGA-----PGSKIIVTTRNRE----VAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTR 394 (1485)
Q Consensus 324 ivlDdv~~~~~~~~~~l~~~l~~~~-----~gs~iivTtr~~~----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 394 (1485)
+|+||+.-.+....+ +...+.... .-..|..+..... +-....+...+.|.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~-lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 158 IVLEDLHWADSASLK-LLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEecccccChhHHH-HHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 999999322211111 111111111 1112333322221 222223346799999999999999887652211
Q ss_pred CCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcC------CChhHHHHHhhccccCCCcccccchhHHHhccccCChh
Q 042986 395 DFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGK------YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAP 468 (1485)
Q Consensus 395 ~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 468 (1485)
....+....|+++.+|+|+.+.-+-..+... .+...|+.=..+ ....+ ..+.+...+..-.+.||..
T Consensus 237 -----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~-~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 -----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILA-TTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred -----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCch-hhHHHHHHHHHHHhcCCHH
Confidence 2235678889999999999999888887653 234445432211 11111 1123445578888999999
Q ss_pred hHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHhcccc
Q 042986 469 LKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFF 526 (1485)
Q Consensus 469 ~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~ 526 (1485)
.++..-..||+-.. |+.+.|-..|-. ...+++....+.|....++
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~ 354 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLIL 354 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhcee
Confidence 99999999998654 455555544421 2345666666666555554
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=7.7e-07 Score=100.77 Aligned_cols=132 Identities=24% Similarity=0.365 Sum_probs=66.7
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEcc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGG 1306 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~ 1306 (1485)
++.|++++| .++.+|. -.++|++|.+++|..+..+|..+ .++|+.|++++|+.+..+|. +|+.|++.+
T Consensus 54 l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 54 SGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred CCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCC
Confidence 566666666 3444441 22346666666666666666444 24677777777765555554 456666654
Q ss_pred c--cCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1307 C--KKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1307 c--~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
+ ..+..+|. +|+.|.+.++...........+|++|+.|++++|..+. +|. .+. .+|+.|+++.|
T Consensus 122 n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~--~LP--~SLk~L~ls~n 187 (426)
T PRK15386 122 SATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE--KLP--ESLQSITLHIE 187 (426)
T ss_pred CCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc--ccc--ccCcEEEeccc
Confidence 2 22334442 35555554322111111112356677777777766543 111 011 36666666654
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.41 E-value=1.3e-06 Score=94.90 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
+.+.++|..|+|||+||+.+++.... ....+.|+.+.... .... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~--~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL--NQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cC
Confidence 57899999999999999999985322 22345666553210 0000 1111122 23
Q ss_pred EEEEEeCCCCCC-hhhHhhc-cccccc-CCCCcEEEE-Eccc---------hhhhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 322 FLLVLDDVWNEN-YNDWVDM-SCPFEA-GAPGSKIIV-TTRN---------REVAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 322 ~LivlDdv~~~~-~~~~~~l-~~~l~~-~~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
-+||+||+|... ...|+.. ...+.. ...|..+|| |++. +++...+.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998642 2445532 222221 123556655 4443 35566666667899999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
+++..+- ..+ +++..-|++.+.|..-++..+
T Consensus 173 ~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 173 NAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHH
Confidence 8864331 112 466777888888876555433
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.41 E-value=2.4e-07 Score=93.60 Aligned_cols=106 Identities=26% Similarity=0.346 Sum_probs=55.8
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhh-hccccccEecccccccccccc--ccccCccccce
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESI-NKLYNLHTFLLEGCWRLKKLC--ADMGNLIKLHH 700 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~ 700 (1485)
.+.+|++|+|++|.|+.++ .+..+++|++|++++|+|+.+++.+ ..+++|+.|++++| .+..+. ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5788999999999999995 6889999999999999999997666 46999999999998 555443 23678899999
Q ss_pred eeccCCCCcccccc----cccCcccccccCceEecc
Q 042986 701 LKNSDTDSLEEMPL----GIGKLTCLRTLCNFAVGK 732 (1485)
Q Consensus 701 L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 732 (1485)
|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 9999998 555443 277889999997766543
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.40 E-value=5.5e-06 Score=98.80 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=102.9
Q ss_pred CceeechhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRD---IVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++.. ... |+.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHH
Confidence 357888776555 66666332 34567889999999999999999843 222 233332211111122
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE--Eccchh--hh-h
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV--TTRNRE--VA-A 364 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~-~ 364 (1485)
.+++. ... ...+++.+|++|+++.......+.+...+. .|..++| ||.+.. +. .
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 22221 111 124578899999998765555555544443 3555555 344332 11 1
Q ss_pred hcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 365 IMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 365 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
.......+++.+++.++.+.++.+.+..... ....-..+....|++.|+|.+..+.-+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1223367999999999999999886432111 000112456778899999998665443
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.6e-05 Score=91.39 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=115.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc----ccccccCeeEEEEE-cCccCHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK----QVQYYFDLKAWTCV-SDDFDVIWL 288 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~~~ 288 (1485)
.+++|.+..++.+..++..+. -.....++|+.|+||||+|+.++... ....|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999985432 34577899999999999999888732 23456676666542 22223222
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhhc-
Q 042986 289 TTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAIM- 366 (1485)
Q Consensus 289 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~- 366 (1485)
.+++.+.+.... ..+++-++|+|+++..+...+..+...+..-..++.+|++|.+.+ +...+
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 222333222111 124566777788766666678888888876677888888886653 22221
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.....+++.+++.++....+.+...+ .+ .+.+..++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 23468999999999998877654311 11 2346678899999886554
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=1.4e-06 Score=86.19 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=80.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc---ccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQY---YFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQL 317 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 317 (1485)
-+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+.+.|+.++........+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46889999999999999999998542110 023567999888889999999999999887766567777778888887
Q ss_pred CCCc-EEEEEeCCCCC-ChhhHhhcccccccCCCCcEEEEEccc
Q 042986 318 SRKK-FLLVLDDVWNE-NYNDWVDMSCPFEAGAPGSKIIVTTRN 359 (1485)
Q Consensus 318 ~~kr-~LivlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 359 (1485)
...+ .+||+|++..- ....++.+.. +.+ ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7655 59999999554 3333344432 222 556677777654
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=6.7e-07 Score=73.91 Aligned_cols=57 Identities=33% Similarity=0.519 Sum_probs=42.3
Q ss_pred CcccEEEecCCCCCCCC-CccCCCCcccEEeccCCcccccC-hhhhccccccEeccccc
Q 042986 626 QRLRVFSLRGYHNPELP-DSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGC 682 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~ 682 (1485)
++|++|++++|.+..+| ..|.++++|++|++++|+|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35777788877777776 46677778888888877777774 56677777777777776
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=5.4e-07 Score=93.43 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=80.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
.|+++++++|. .+.+.++..-+|.++.|++++|.+...- .+..+++|+.|+|++|. +..+...-..+-+.++|.++
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 58888888874 3445566677788888888887765532 36778888888888873 43333222334567777777
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeecccccc
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDER 1384 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1384 (1485)
+ +.+..+. ++..+-+|..|++++| .+ ..+.....+++||.|++|.+.+|++.
T Consensus 361 ~-N~iE~LS-GL~KLYSLvnLDl~~N------------------------~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 Q-NKIETLS-GLRKLYSLVNLDLSSN------------------------QI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred h-hhHhhhh-hhHhhhhheecccccc------------------------ch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 7 3444443 4445555555555543 32 22223345788888999999988753
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=2.1e-07 Score=96.36 Aligned_cols=98 Identities=27% Similarity=0.305 Sum_probs=71.7
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
..+.|..|||++|.|+.+-+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+..+-..=.+|-|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 4567888899999988888888888889999999998887744 788888888898888 45555443456777778888
Q ss_pred cCCCCcccccccccCccccccc
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
++|. +..+ .++++|-+|..|
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNL 379 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheec
Confidence 8776 4443 244555444444
No 56
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.22 E-value=2.1e-05 Score=97.63 Aligned_cols=203 Identities=18% Similarity=0.151 Sum_probs=121.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc---CeeEEEEEcCc---cCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF---DLKAWTCVSDD---FDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~ 287 (1485)
++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3589999999988877732 234578999999999999999998765433332 12445555431 12222
Q ss_pred HHHHH---------------HHhhcCCC----------------CCCCC-HHHHHHHHHHHhCCCcEEEEEeCCCCCChh
Q 042986 288 LTTII---------------LRSITKQT----------------IDNSD-LNLLQEELKKQLSRKKFLLVLDDVWNENYN 335 (1485)
Q Consensus 288 ~~~~i---------------l~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LivlDdv~~~~~~ 335 (1485)
+...+ ++..+... ++... ....+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 01111 123567888889999999998888877667
Q ss_pred hHhhcccccccCCCCcEEEE--Eccchhh-hhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHH
Q 042986 336 DWVDMSCPFEAGAPGSKIIV--TTRNREV-AAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVI 411 (1485)
Q Consensus 336 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~ 411 (1485)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+-... .... .++.+.|++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHH
Confidence 78877766665555555555 5665431 1111 1234678899999999999998763221 1111 244455555
Q ss_pred HcCCChhHHHHHHhH
Q 042986 412 KCNGLPLAAKTLGGL 426 (1485)
Q Consensus 412 ~c~g~PLai~~~~~~ 426 (1485)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 555446666655544
No 57
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=3.4e-06 Score=82.34 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
+++.|.|+-|+||||++++++.+.. ....+++++..+....... +.+ +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 6899999999999999999997533 2345667766553221100 000 2233444444578
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhc------CCcCceeCCCCChhhH
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIM------GTVPAYQLKNLSIDDC 382 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~~ 382 (1485)
.+|++|++... .+|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999554 57888777776666678999999887655321 1224688999987763
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.3e-06 Score=101.42 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=115.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.....+.+...+|+|.+-.. +......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 458999999999988885442 23567899999999999999998754322223223343321100 000000000
Q ss_pred HhhcCCCCCCCCHHHHH---HHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEcc-chhhhhhc-C
Q 042986 294 RSITKQTIDNSDLNLLQ---EELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTR-NREVAAIM-G 367 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~---~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~ 367 (1485)
..+... .....+.+. +.+.. -..+++-++|+|+++......+..+...+........+|++|. ...+...+ .
T Consensus 88 ~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 011110 111222222 22221 1234567899999987766667777776655445556555554 33443333 2
Q ss_pred CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHhH
Q 042986 368 TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGGL 426 (1485)
Q Consensus 368 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~~ 426 (1485)
....+++.+++.++..+.+.+.+...+... -.+....|++.++|.+- |+..+-.+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345799999999999999988764332111 13567789999999884 44444333
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.18 E-value=1.2e-05 Score=88.27 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK 298 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 298 (1485)
.+..++.+.+++.. .....+.|+|..|+|||++|+.+++... ......++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH------
Confidence 34456666666532 2346788999999999999999998432 222334555443311 100
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh-hHh-hccccccc-CCCCcEEEEEccchh---------hhhhc
Q 042986 299 QTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYN-DWV-DMSCPFEA-GAPGSKIIVTTRNRE---------VAAIM 366 (1485)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 366 (1485)
. .+...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 11111222 238999999654321 233 23222221 123457888887532 12222
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLG 424 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 424 (1485)
.....+++.+++.++...++.+.+-..+ ...+ .+..+.+++.+.|.|..+.-+.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRG-LQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 2235789999999999998887543221 1111 3556677778999887766553
No 60
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=4.1e-06 Score=93.75 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=63.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc--CHHHHHHHHHHhhcCCCCCCCCHHHH------HH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF--DVIWLTTIILRSITKQTIDNSDLNLL------QE 311 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~------~~ 311 (1485)
.-+...|+|++|+||||||++||+..... +|+..+||.+++.+ ++.++++.+...+-....+....... .+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999976655 99999999999987 78888888875433333222211111 11
Q ss_pred HHHHH-hCCCcEEEEEeCC
Q 042986 312 ELKKQ-LSRKKFLLVLDDV 329 (1485)
Q Consensus 312 ~l~~~-l~~kr~LivlDdv 329 (1485)
.-+.. -.++.++|++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 11111 3679999999999
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.16 E-value=7.1e-06 Score=88.82 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=64.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc--cCHHHHHHHHHHhhcCCCCCCCCHH------HHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD--FDVIWLTTIILRSITKQTIDNSDLN------LLQE 311 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 311 (1485)
.-..++|+|++|+|||||++.+|++.... +|+..+|+.+++. +++.++++.+...+.....+..... ...+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999976554 8999999998777 7999999998554433332222111 1122
Q ss_pred HHHHH-hCCCcEEEEEeCCC
Q 042986 312 ELKKQ-LSRKKFLLVLDDVW 330 (1485)
Q Consensus 312 ~l~~~-l~~kr~LivlDdv~ 330 (1485)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 34789999999993
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=2e-06 Score=91.21 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=34.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ 268 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 268 (1485)
+||||+++.+++...+... .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4799999999999999521 34456899999999999999999999855444
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.15 E-value=1.2e-05 Score=81.87 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=71.7
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 217 YGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 217 vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
+|++..++.+...+... ..+.+.|+|.+|+||||+|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888442 346888999999999999999998542 111345566554433222111111000
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh---hhHhhcccccccC---CCCcEEEEEccchh
Q 042986 297 TKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY---NDWVDMSCPFEAG---APGSKIIVTTRNRE 361 (1485)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~---~~~~~l~~~l~~~---~~gs~iivTtr~~~ 361 (1485)
............++.++|+||++.... ..+.......... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011111223345678999999975321 2222222222221 35778888887653
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.6e-05 Score=88.44 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=107.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+......... ..+...-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 458999999999998885431 245678999999999999999987432111100 00000000011111
Q ss_pred HhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhh
Q 042986 294 RSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 363 (1485)
..... ........++..+.+... ..+++-++|+|++.......++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000 000001222222211111 12455699999997766555666666665545566777666543 333
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
..+ +....+++.+++.++..+.+.+.+...+. .. -.+.+..|++.++|.|-.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i---~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DT---DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHH
Confidence 322 23457999999999998888776533221 11 135567788999998753
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.14 E-value=3.3e-05 Score=90.80 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=105.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|++..++.+..++..+ ..+.+.++|+.|+||||+|+.+.+.... ..+. ..+.+++++-.+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhc--chhhh
Confidence 45889999999998888433 3346789999999999999999874321 1111 1233333321100 00000
Q ss_pred HH------hhcCC-CCCCCCHHHHHHHHHHH---h--CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch
Q 042986 293 LR------SITKQ-TIDNSDLNLLQEELKKQ---L--SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 293 l~------~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
.. .+... .......+.....++.. . .+.+-+||+||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 00000 00011122222222221 1 2344589999996554333444444443334456787777543
Q ss_pred -hhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 361 -EVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 361 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.+...+ .....+++.+++.++...++.+.+...+. .. -.+..+.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DY---DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 222222 22356889999999998888876533221 11 14567778888888765443
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=1.1e-06 Score=105.66 Aligned_cols=107 Identities=28% Similarity=0.409 Sum_probs=92.5
Q ss_pred ccccccccCC-cccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCc
Q 042986 617 SILPKLFKLQ-RLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNL 695 (1485)
Q Consensus 617 ~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 695 (1485)
++++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.+.+|+.|++++| .+..+|..+..+
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~ 208 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELL 208 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhh
Confidence 4455455664 99999999999999998999999999999999999999998889999999999999 799999988888
Q ss_pred cccceeeccCCCCcccccccccCccccccc
Q 042986 696 IKLHHLKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 696 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
..|+.|.+++|. ....+..+.+++++..|
T Consensus 209 ~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 209 SALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 899999999986 55666667777766666
No 67
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.13 E-value=4.1e-05 Score=82.18 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=97.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
+...-+.+||++|+||||||+.+....+... ..+|..|..-.-..-.+.|.++.. =...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 3567788999999999999999998544333 345666654433333444444421 112356
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE--Eccchhh---hhhcCCcCceeCCCCChhhHHHHHHhccc--
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV--TTRNREV---AAIMGTVPAYQLKNLSIDDCLSVFAQHSL-- 391 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~-- 391 (1485)
++|.+|.+|.|..-+..+-+.+ +|....|.-++| ||.++.. +..+....++.|++|..++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 7899999999955433333333 455567877776 7776643 22234557899999999998888877321
Q ss_pred -CCCC---CCCChh---HHHHHHHHHHHcCCCh
Q 042986 392 -GTRD---FSSNKS---LEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 392 -~~~~---~~~~~~---~~~~~~~i~~~c~g~P 417 (1485)
.++. .-+++. -..+..-++..|+|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 112211 2245566777788865
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=98.12 E-value=0.00017 Score=88.02 Aligned_cols=247 Identities=15% Similarity=0.133 Sum_probs=134.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.++.++++.+|+.... .+...+.+.|+|++|+||||+|+.+++... |+ .+-++.++.... ...+.++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 458999999999999996542 112267889999999999999999998542 22 223344432222 2222332
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh----hhHhhcccccccCCCCcEEEEEccch-hhhh-hc-
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY----NDWVDMSCPFEAGAPGSKIIVTTRNR-EVAA-IM- 366 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~- 366 (1485)
....... .....++-+||+|+++.... ..+..+...+. ..+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 2221110 01113678999999976422 22334433333 2234566666442 2211 11
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH-HHhHhhcCC--ChhHHHHHhhcc
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT-LGGLLRGKY--SQCEWEGVLSSK 443 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~-~~~~l~~~~--~~~~w~~~l~~~ 443 (1485)
.....+++.+++.++....+.+.+...+. ..+ .+....|++.++|-.-.+.. +-.+..++. +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23457899999999988888776643322 122 35677888999987655443 333222221 2333332221
Q ss_pred ccCCCcccccchhHHHhccc-cCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCC
Q 042986 444 IWDLPEERCDIIPALRVSYY-YLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDH 502 (1485)
Q Consensus 444 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 502 (1485)
.+....++.++..-+. .-+......+.. ..++. +.+..|+.+.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1112356666654443 222333332222 12233 45778999999754
No 69
>PTZ00202 tuzin; Provisional
Probab=98.09 E-value=9.4e-05 Score=83.17 Aligned_cols=168 Identities=12% Similarity=0.142 Sum_probs=103.3
Q ss_pred CccCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHH
Q 042986 210 LVNEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 210 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 289 (1485)
+.+.+.|+||+++..++...|...+ ....+++.|+|++|.|||||++.+..... + .+++.-.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 3456789999999999999986442 22456999999999999999999997432 1 13332222 679999
Q ss_pred HHHHHhhcCCCCCC--CCHHHHHHHHHHHh-C-CCcEEEEEeCCCCCChh-hHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 290 TIILRSITKQTIDN--SDLNLLQEELKKQL-S-RKKFLLVLDDVWNENYN-DWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 290 ~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~kr~LivlDdv~~~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
+.++.+++...... +-.+.+++.+.+.- . +++.+||+-==...+.. .+.+. ..+.....-|.|++----+.+.-
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 99999999743221 11234444444332 2 56777776533222111 12222 23444455667777554433321
Q ss_pred hcC---CcCceeCCCCChhhHHHHHHhc
Q 042986 365 IMG---TVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 365 ~~~---~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
... .-..|-+..++.++|.++..+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 111 1246889999999998887765
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.08 E-value=3.5e-05 Score=88.69 Aligned_cols=179 Identities=11% Similarity=0.104 Sum_probs=101.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|.++.++.|..++... ..+.+-++|++|+||||+|+.+.+... ...|. ..+-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 45789988888888777432 334567999999999999999987431 11221 11112222222211 22222
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CCcC
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GTVP 370 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~ 370 (1485)
++........ .-.++.-++|+|+++.........+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 001346689999997765444444444443334456777766442 222211 2235
Q ss_pred ceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 371 AYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 371 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.++++++++++....+.+.+-..+- .-+ .+....|++.++|-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCH
Confidence 7899999999998888876643221 111 345677888898866
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.8e-08 Score=100.19 Aligned_cols=180 Identities=19% Similarity=0.209 Sum_probs=113.3
Q ss_pred ccccEEEecccCcccc-ccccccCCCCcceEeeccCCCccccCCC-CCCCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1062 CRLERLELRDCQDLVK-LPKSLLSLSSLTEIRIHNCSSLVSFPDA-VLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~-l~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
+.|+.|+|++..++.. +-..++.|.+|+.|.|.++..-..+... ....+|+.|+|+.|...+...-..++.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3589999998877643 5567788899999999888554333221 2346788888888887776655556778888888
Q ss_pred EEEecCCCCcccc---CCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccc
Q 042986 1140 LDIRHCHSLTYVA---GVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALD 1216 (1485)
Q Consensus 1140 L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~ 1216 (1485)
|+|+.|......- .....+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise---------------------------------------------------------- 286 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISE---------------------------------------------------------- 286 (419)
T ss_pred cCchHhhccchhhhHHHhhhch----------------------------------------------------------
Confidence 8888886333221 011122
Q ss_pred cccccCCcccccEEEEeccCCc---chHHhhcccCCCccEEEeecCCCccc-cCcCCCCCCCcCEEEeeCCCCCcccCCC
Q 042986 1217 HLVVGNLPQALKFLSIWHCSRL---ESIVERLDNNTSLEVIEIVSCENLKI-LPHGLHKLWRLQEIDIHGCENLVSFPEG 1292 (1485)
Q Consensus 1217 ~~~~~~l~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~-l~~~l~~l~~L~~L~L~~~~~l~~~p~~ 1292 (1485)
.|..|+|+||... ..+......+++|..|||++|..++. .-..|..++.|++|.++.|..+ +|..
T Consensus 287 ---------~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~ 355 (419)
T KOG2120|consen 287 ---------TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPET 355 (419)
T ss_pred ---------hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHH
Confidence 3455555554321 13333345677777777777765542 2234667788888888888654 2332
Q ss_pred ---CcCccccceEEEccccCc
Q 042986 1293 ---GLLSAKLKRLVIGGCKKL 1310 (1485)
Q Consensus 1293 ---~~~~~~L~~L~l~~c~~l 1310 (1485)
+...++|.+|++.+|-.-
T Consensus 356 ~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeeccCcceEEEEeccccCc
Confidence 344567777777776433
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.3e-06 Score=69.74 Aligned_cols=58 Identities=31% Similarity=0.437 Sum_probs=51.6
Q ss_pred CcccEEeccCCcccccC-hhhhccccccEeccccccccccccc-cccCccccceeeccCCC
Q 042986 649 RNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCA-DMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 649 ~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 707 (1485)
++|++|++++|+|+.+| ..|.++++|++|++++| .+..+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47999999999999998 67899999999999998 5666664 68999999999999986
No 73
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=4.2e-06 Score=105.03 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=87.0
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEcc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGG 1306 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~ 1306 (1485)
++.|+|++|...+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77888888888888888888899999999999888888888888899999999999877778888888888899999988
Q ss_pred ccCccccccCCCCC-CccCEEEeeCCCCC
Q 042986 1307 CKKLEALPLGMHHL-TCLQHLTIGGVPSL 1334 (1485)
Q Consensus 1307 c~~l~~l~~~~~~l-~~L~~L~l~~~~~l 1334 (1485)
|.....+|..+... .++..+++.+|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 87777777766542 35566666666543
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=4.9e-05 Score=92.08 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=112.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+....+..++ +.....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999985432 245667999999999999998876432111110 00000001111111
Q ss_pred Hhh-----cCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhh
Q 042986 294 RSI-----TKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVA 363 (1485)
Q Consensus 294 ~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 363 (1485)
..- ..........+++.+.+... ..++.-++|||++.......|..++..+..-....++|++|++. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 000 00000111222322222221 12455688899998776666777777665555577877777664 333
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLG 424 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 424 (1485)
..+ .....+++++++.++..+.+.+.+-..+- .. -.+....|++.++|.. -|+.++-
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 23457999999999999888876532221 11 1456677889998855 4555433
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.5e-05 Score=93.07 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=111.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------cCee
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY-------------------FDLK 274 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 274 (1485)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++...-... |.-.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999998885432 2345679999999999999999975422111 1001
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI 353 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i 353 (1485)
+++...... ...+..++.+.+.. -..+++-++|+|++.......++.++..+..-....++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 111111000 11112222222221 12467779999999777666677776666544455666
Q ss_pred EEEccc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHh
Q 042986 354 IVTTRN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGG 425 (1485)
Q Consensus 354 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~ 425 (1485)
|++|.+ ..+...+ .....|++++++.++..+.+.+.+-..+ .. --.+....|++.++|.|- |+.++-.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~---~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LP---FEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 665544 4443322 2346799999999999988887553221 11 113566779999999874 4444433
No 76
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=3.7e-06 Score=105.48 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=83.0
Q ss_pred cccEEEecCCCCC-CCCCccCCCCcccEEeccCCccc-ccChhhhccccccEeccccccccccccccccCccccceeecc
Q 042986 627 RLRVFSLRGYHNP-ELPDSIGNLRNLRYLNLSGTNIK-TLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNS 704 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 704 (1485)
.++.|+|++|.+. .+|..|++|.+|++|+|++|++. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999875 67899999999999999999998 889999999999999999997667899999999999999999
Q ss_pred CCCCcccccccccCc
Q 042986 705 DTDSLEEMPLGIGKL 719 (1485)
Q Consensus 705 ~~~~l~~~p~~i~~L 719 (1485)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998666888777653
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.7e-05 Score=89.54 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-.. |+.. .....-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999995442 246778999999999999999887432111 1100 0000000111111
Q ss_pred HhhcC-----CCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhh
Q 042986 294 RSITK-----QTIDNSDLNLLQEELKK----QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 363 (1485)
..-.. ........+++.+.+.. -..+++-++|+|+|..-.......+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 00000 00001123333222211 123566789999997765555666666555444566777766553 332
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
.. ......+++++++.++..+.+.+.+-..+... -.+....|++.++|.+-.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 22 23446799999999999888877653322111 1345667888999977433
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.02 E-value=7.2e-05 Score=77.16 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=88.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+|||.+.-++.+.-++..... .++...-+-.||++|+||||||+.+.+... ..|. +.+... .+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELG--VNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccC--CCeE---eccchh-hh---------
Confidence 5689999888876554432111 234567788999999999999999999543 3332 222111 00
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccc--------cCCC-----------CcEEE
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFE--------AGAP-----------GSKII 354 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~--------~~~~-----------gs~ii 354 (1485)
...++...+.. + +++-++.+|.+..-+...-+.+..+.. ..++ =+-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 01111111111 1 234466677775543222222211111 1111 23355
Q ss_pred EEccchhhhhhcCCc--CceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 355 VTTRNREVAAIMGTV--PAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 355 vTtr~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
.|||...+...+..- -..+++.-+.+|-.++..+.|-.-. -+--++.+.+|++++.|-|--+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHH
Confidence 688886665544332 2357999999999999988764322 1223578899999999999433
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.01 E-value=9.9e-05 Score=85.98 Aligned_cols=180 Identities=11% Similarity=0.110 Sum_probs=102.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEE--cCccCHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCV--SDDFDVIWLTTI 291 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 291 (1485)
.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+.+..... .+. ..++.+ +...... ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE-DWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998433 33457899999999999999998743211 111 122222 2211111 1111
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CCc
Q 042986 292 ILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GTV 369 (1485)
Q Consensus 292 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~ 369 (1485)
.+.++..... .....+-++++|++..........+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001235689999986554334444544444334456777766432 221111 123
Q ss_pred CceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 370 PAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 370 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
..+++.+++.++....+.+.+...+- .-+ .+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI-EIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 46899999999998888876643221 111 356777888999987543
No 80
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00023 Score=82.07 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=127.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
.+.+|+++++++...|...- .+....-+.|+|..|+|||+.++.|.+..+....=...++|++-......+++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~--~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPAL--RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHh--cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 38899999999998886432 2223334889999999999999999985433221112788999888999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChh---hHhhcccccccCCCCcEEEE--EccchhhhhhcC
Q 042986 295 SITKQTIDNSDLNLLQEELKKQLS--RKKFLLVLDDVWNENYN---DWVDMSCPFEAGAPGSKIIV--TTRNREVAAIMG 367 (1485)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~~~---~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~~ 367 (1485)
+++..........+..+.+.+.+. ++.++||||+++.-... ..-.+...... ..++|++ .+-+......+.
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--cceeEEEEEEeccHHHHHHhh
Confidence 997544445666666677776664 57899999999553211 11122221111 1455444 333333332221
Q ss_pred -------CcCceeCCCCChhhHHHHHHhcccCC-CC-CCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 042986 368 -------TVPAYQLKNLSIDDCLSVFAQHSLGT-RD-FSSNKSLEEIGRKIVIKCNGLPLAAKTLG 424 (1485)
Q Consensus 368 -------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~-~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 424 (1485)
....+...|=+.+|-.+.+..++-.. .+ ...+..++-+|...++..|---.||.++-
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 11236788888899888888876321 11 12223333444444444444556665543
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00012 Score=88.19 Aligned_cols=186 Identities=17% Similarity=0.132 Sum_probs=110.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCee
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-------------------YFDLK 274 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 274 (1485)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998885431 235577899999999999999986321100 11112
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI 353 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i 353 (1485)
+++.......+ .+..++.+.+... ..+++-++|+|++.......++.+...+.......++
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22221111111 1122222222211 2356679999999776656677777666654455655
Q ss_pred E-EEccchhhhhh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHhH
Q 042986 354 I-VTTRNREVAAI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGGL 426 (1485)
Q Consensus 354 i-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~ 426 (1485)
| +||....+... ......+++++++.++....+.+.+-..+ ... -.+....|++.++|.+ -|+..+-.+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INS---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5 45544444433 23346899999999998877776442221 111 1345567888999965 455555443
No 82
>PRK08727 hypothetical protein; Validated
Probab=97.96 E-value=9.6e-05 Score=80.47 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
..+.|+|..|+|||.|++.+++.... ....+.++++.+ ....+. +.+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 56999999999999999999885322 223455665322 111111 11111 1 123
Q ss_pred EEEEEeCCCCCC-hhhHhhccccccc--CCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHHHhc
Q 042986 322 FLLVLDDVWNEN-YNDWVDMSCPFEA--GAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 322 ~LivlDdv~~~~-~~~~~~l~~~l~~--~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
-+||+||+.... ...|......+.+ ...|..||+|++.. ++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995432 1233322222221 13466799999852 22233334567999999999999999987
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 390 SLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
+...+ ...+ ++...-|++.+.|-.-++
T Consensus 175 a~~~~-l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG-LALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC-CCCC---HHHHHHHHHhCCCCHHHH
Confidence 75422 1111 456667888887655444
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.96 E-value=4.7e-05 Score=95.30 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=94.5
Q ss_pred CceeechhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKR---DIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.+++|++..+. .+...+.. .....+.++|++|+||||+|+.+++.. ..+|. .++......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~--~~~f~-----~lna~~~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHT--RAHFS-----SLNAVLAGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHh--cCcce-----eehhhhhhh----
Confidence 35789887664 45555532 245567899999999999999999843 33331 111100000
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEE--ccchh--hhh
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQL--SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVT--TRNRE--VAA 364 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 364 (1485)
.+..+......+.+ .+++.++|+||++.-....++.+...+ ..|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhh
Confidence 01111111222211 246789999999766555555554433 235555553 34321 211
Q ss_pred hc-CCcCceeCCCCChhhHHHHHHhcccC------CCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 365 IM-GTVPAYQLKNLSIDDCLSVFAQHSLG------TRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 365 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~------~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.. .....+.+++++.++...++.+.+-. ...... -.+....|++.+.|.-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCH
Confidence 11 22457999999999999998876531 111111 1345667888888753
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=2.4e-07 Score=99.09 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=70.1
Q ss_pred ccccEEEEeccCCc----chHHhhcccCCCccEEEeecCCCcc----ccCcCCCCCCCcCEEEeeCCCCCcc----cCCC
Q 042986 1225 QALKFLSIWHCSRL----ESIVERLDNNTSLEVIEIVSCENLK----ILPHGLHKLWRLQEIDIHGCENLVS----FPEG 1292 (1485)
Q Consensus 1225 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~~----~p~~ 1292 (1485)
+.|+++...+|..- +.+...|...+.|+.+.++.|.+-. .+...+.++++|+.|||+.|..... +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 44777777776432 2335556667777777777765432 2334566677777777777643311 1122
Q ss_pred CcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccc--cCcCCcc
Q 042986 1293 GLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTE--SGGFHRL 1370 (1485)
Q Consensus 1293 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~l 1370 (1485)
+..+++|++|+++.|..-..-...+. ..+.. ..++|+.|.+.+|.+...-.. .......
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~----------------~al~~---~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFV----------------DALKE---SAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred hcccchheeecccccccccccHHHHH----------------HHHhc---cCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 23334455555555532221110000 00000 124566666666654331100 0012346
Q ss_pred ccccceeeccccc
Q 042986 1371 TSLRRLAISGCDE 1383 (1485)
Q Consensus 1371 ~~L~~L~l~~n~~ 1383 (1485)
+.|+.|+|++|..
T Consensus 298 ~dL~kLnLngN~l 310 (382)
T KOG1909|consen 298 PDLEKLNLNGNRL 310 (382)
T ss_pred hhhHHhcCCcccc
Confidence 7888888888875
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00014 Score=87.12 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=111.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCe-eEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDL-KAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|.+..+..+...+..+. -...+-++|+.|+||||+|+.+++.......... ..+..+... ...+.+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 458999999998888775431 2356789999999999999999874321111000 000000000 000111
Q ss_pred HHhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchhh
Q 042986 293 LRSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNREV 362 (1485)
Q Consensus 293 l~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 362 (1485)
...... ........+++.+.+... +.+++-++|+|+++.-....|..+...+....+..++|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100000 000112233333322221 345677899999988766778888777665455666554 5555555
Q ss_pred hhhcC-CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 363 AAIMG-TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 363 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
...+. ....+++.+++.++..+.+.+.+...+... -.+....|++.++|.+-
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSAR 224 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 54432 345799999999999999988774332111 13455668889999773
No 86
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=7e-06 Score=61.56 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=22.7
Q ss_pred cccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC
Q 042986 627 RLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP 665 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP 665 (1485)
+|++|++++|.|+.+|..|++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665543
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00014 Score=87.01 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=110.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---ccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY---YFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-.. .... . +.....-...+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-~----~~PCG~C~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-T----AQPCGQCRACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-C----CCCCcccHHHH
Confidence 468999999999999996542 235668899999999999998876432110 0000 0 00000000111
Q ss_pred HHHHh-----hcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE-EEEccch
Q 042986 291 IILRS-----ITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI-IVTTRNR 360 (1485)
Q Consensus 291 ~il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i-ivTtr~~ 360 (1485)
.|... +..........+++.+.+... ..++.-++|+|++...+...++.++..+..-..+.++ ++||...
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11100 000000112233333332221 2456679999999887766777777766544445564 4555555
Q ss_pred hhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 361 EVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 361 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.+...+ .....+.++.++.++..+.+.+.+-..+ ... -.+....|++.++|.|.-+.
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~---d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAH---EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 554333 2346799999999999888876543221 111 13455778999999885443
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=4e-05 Score=89.48 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=108.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...-..... ...+........+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 468999999999988885442 134678999999999999999987432111000 000011111111111100
Q ss_pred Hh---hcC-CCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEE-EEccchhhhhhc-
Q 042986 294 RS---ITK-QTIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKII-VTTRNREVAAIM- 366 (1485)
Q Consensus 294 ~~---l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~~- 366 (1485)
.. +.. .....++..++.+.+... ..++.-++|+|++..-....++.++..+........+| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 000 000111222232333221 24566799999998777677777776664433344544 455545554333
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.....|.+.+++.++..+.+.+.+-..+. .- -.+....|++.++|.+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~---e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-QY---DQEGLFWIAKKGDGSV 216 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCChH
Confidence 23457999999999988888776533221 11 1356678999999987
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00025 Score=82.67 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=106.2
Q ss_pred CceeechhHHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------cC-eeEEEEEcC
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR----NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY-------FD-LKAWTCVSD 281 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------F~-~~~wv~~s~ 281 (1485)
.+++|.+..++.+..++..+... +..-..-+-++|+.|+||||+|+.+....--... .. |+.+. -..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~-~~~ 83 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL-AGT 83 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh-cCC
Confidence 35889999999999999654200 0012456789999999999999888653211100 00 00000 000
Q ss_pred ccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc
Q 042986 282 DFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT 357 (1485)
Q Consensus 282 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 357 (1485)
.+|+..+ .. .......+++.+.+... ..+++-++|+|++..........+...+.....+..+|++|
T Consensus 84 hpD~~~i--------~~-~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 84 HPDVRVV--------AP-EGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred CCCEEEe--------cc-ccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 0110000 00 00011222222211111 12455588889997766555556665555444566666655
Q ss_pred cc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 358 RN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 358 r~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
.+ ..+...+ .....+.+.+++.++..+.+.+.. + .+ .+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 55 3444332 234689999999999998887532 1 11 345677899999999755443
No 90
>PRK09087 hypothetical protein; Validated
Probab=97.90 E-value=0.0001 Score=79.32 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=85.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
.+.+.|+|..|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 36789999999999999999887432 1233221 1111111111 11
Q ss_pred cEEEEEeCCCCC--ChhhHhhcccccccCCCCcEEEEEccc---------hhhhhhcCCcCceeCCCCChhhHHHHHHhc
Q 042986 321 KFLLVLDDVWNE--NYNDWVDMSCPFEAGAPGSKIIVTTRN---------REVAAIMGTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 321 r~LivlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
-+|++||+... .+..+..+...+. ..|..||+|++. +++...+.....+++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 1222222222222 336678988873 334445556678999999999999999988
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 390 SLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+-..+ ...+ +++..-|++.+.|..-++..
T Consensus 166 ~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQ-LYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 74322 1112 46677788888877766553
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.88 E-value=0.00031 Score=83.11 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc--------------------cccCe
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------------------YYFDL 273 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 273 (1485)
.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 457999999999999885432 24577899999999999998887642111 12221
Q ss_pred eEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcE
Q 042986 274 KAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSK 352 (1485)
Q Consensus 274 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ 352 (1485)
.++..+..... + +..++.+.+... ..+++-++|+|++..-.......+...+........
T Consensus 89 -~~~~~~~~~~~-~-----------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV-D-----------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH-H-----------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22211111111 0 111122221111 224556889999866544455566555544345666
Q ss_pred EEEEccchh-hhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 353 IIVTTRNRE-VAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 353 iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+|++|.+.. +...+ .....+++.+++.++..+.+...+-..+. ..+ .+.+..+++.++|.|-.+..
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIE---DEALELIARAADGSLRDALS 217 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCChHHHHH
Confidence 666665443 33222 23357889999999988888876533221 111 36677889999998865543
No 92
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=5e-05 Score=85.89 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=64.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc--cCHHHHHHHHHHhhcCCCCCCCCHH------HHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD--FDVIWLTTIILRSITKQTIDNSDLN------LLQE 311 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 311 (1485)
.-+.++|+|++|.|||||++.+++..... +|+..+||.+.+. .++.++++.++..+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34688999999999999999999976544 8999999999866 7899999998766544433322111 1111
Q ss_pred HHHHH-hCCCcEEEEEeCC
Q 042986 312 ELKKQ-LSRKKFLLVLDDV 329 (1485)
Q Consensus 312 ~l~~~-l~~kr~LivlDdv 329 (1485)
...+. -.+++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 22222 3589999999999
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00017 Score=87.64 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=105.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+......... +..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 468999999999999985432 235678999999999999998877421111000 0000000 0000000
Q ss_pred Hh-----hcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhh
Q 042986 294 RS-----ITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVA 363 (1485)
Q Consensus 294 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 363 (1485)
.. +..........+.+.+.+... ..+++-++|+|++..........++..+..-....++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 000000111222222222211 23466789999997655444555555554434456666666443 332
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
.. .+....+.+.+++.++....+.+.+-..+. .. -.+....|++.++|.+--+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~i---d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AY---EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHhCCCHHHH
Confidence 22 123356888999999998888776543221 11 1356678999999987433
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00026 Score=84.08 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=107.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc--------------------ccccCe
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV--------------------QYYFDL 273 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~ 273 (1485)
.++||.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.....- ..|.|
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D- 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD- 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-
Confidence 468999999998888885431 2347889999999999999988752110 01111
Q ss_pred eEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE
Q 042986 274 KAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI 353 (1485)
Q Consensus 274 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i 353 (1485)
++.++.+....+.+ .+++++.... .-..+++-++|+|++..-.....+.+...+..-.+..++
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 22222222222211 1122221110 002345668999999766555566676666554556666
Q ss_pred EEEc-cchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 354 IVTT-RNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 354 ivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
|++| ....+...+ .....+++.+++.++..+.+.+.+...+..- -.+....|++.++|.+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 6555 444554433 2346799999999999888888664332211 134566788999987743
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.82 E-value=2e-05 Score=87.77 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=163.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCe-eEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDL-KAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
..+-+.++|.|||||||++-.+.. ++..|.. +.+|....--|...+.-.....++-... +.+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 357899999999999999988887 4455644 4444444434554444444444443322 22334456677778
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhcCCcCceeCCCCChh-hHHHHHHhcccCCC-CC
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMGTVPAYQLKNLSID-DCLSVFAQHSLGTR-DF 396 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~-~~ 396 (1485)
++|.++|+||-.+-. ..-..+.-.+..+...-+|+.|+|..... .....+.+.+|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999983321 11122233344455566788899876432 23456778888775 68889887764322 11
Q ss_pred CCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhcccc------CC-CcccccchhHHHhccccCChhh
Q 042986 397 SSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSKIW------DL-PEERCDIIPALRVSYYYLSAPL 469 (1485)
Q Consensus 397 ~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~------~~-~~~~~~i~~~l~~sy~~L~~~~ 469 (1485)
.-...-.....+|.++.+|.|++|...++..+.- ....-..-++.... .+ ...+....+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 2223335678889999999999999999887765 22222222211100 00 0112356788999999999988
Q ss_pred HhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHhccccccc
Q 042986 470 KQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 470 k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
+--|.-++.|...|.-. -..|.+-|=... ...-....-+..+++.+++...
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhh
Confidence 89999999998776543 334555442110 0111223335667777776543
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00031 Score=84.63 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=108.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+...-. -|.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~------~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCL------NPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCC------CCCCCC-CCcccHHHHHHH
Confidence 468999999999999885432 23567899999999999999998743211 121100 011111111111
Q ss_pred HhhcCC-----CCCCCCHHHH---HHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-cchhhh
Q 042986 294 RSITKQ-----TIDNSDLNLL---QEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-RNREVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~---~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 363 (1485)
...... .......+++ .+.+... ..+++-++|+|++.......+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 0001122222 2222111 12334469999997765556666666555434455655544 444443
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHh
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGG 425 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~ 425 (1485)
.. ......+++.+++.++....+.+.+-..+. ..+ .+.+..+++.++|.+ .|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32 233467999999999998888876532221 111 345677889999965 45554444
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00024 Score=87.01 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=109.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+..--...+. ......-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999988885431 234567999999999999999987432111000 00000111111111
Q ss_pred Hh-------hcCCC-CCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEcc-chhhh
Q 042986 294 RS-------ITKQT-IDNSDLNLLQEELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTR-NREVA 363 (1485)
Q Consensus 294 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 363 (1485)
.. +.... ...++..++.+.+.. -..+++-++|+|++........+.++..+..-....++|.+|. ...+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 00000 011112222222221 1345677999999987766667777666654444556555444 44443
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTL 423 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 423 (1485)
..+ .....+.+++++.++....+.+.+-..+. .. -.+....|++.++|.+- |+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 23467999999999999888775422211 11 13455678999999775 44444
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.81 E-value=0.00018 Score=78.45 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=88.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|+.|+|||+|++.+++.... .-..+.++.+..... ...+..+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-
Confidence 357889999999999999999984322 222345555432100 0011111111 1
Q ss_pred cEEEEEeCCCCCC-hhhHhhcc-ccccc-CCCC-cEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHHH
Q 042986 321 KFLLVLDDVWNEN-YNDWVDMS-CPFEA-GAPG-SKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVFA 387 (1485)
Q Consensus 321 r~LivlDdv~~~~-~~~~~~l~-~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 387 (1485)
--++++||+.... ...|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 1378999995432 13444322 11211 1123 3789998754 334444556789999999999999988
Q ss_pred hcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 388 QHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+++...+ ...+ +++..-|++.+.|..-++..
T Consensus 178 ~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 178 LRARLRG-FELP---EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHH
Confidence 8664322 1112 46777788888876654443
No 99
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00053 Score=79.25 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=111.1
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--cC----------------ee
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY--FD----------------LK 274 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~----------------~~ 274 (1485)
-.+++|.+..++.+.+.+..+. -...+-++|+.|+||+|+|..+.+..--+.. .. ..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3568999999999999885542 2456889999999999999777653211110 00 00
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCC
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAP 349 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~ 349 (1485)
-|+..+..+|...+.... ..-++.....-.++++. .+.+.+ .+++.++|+||+...+......+...+..-..
T Consensus 93 ~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 001111111111000000 00000000111234432 233333 24577999999987766666667666654445
Q ss_pred CcEEEEEccch-hhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 350 GSKIIVTTRNR-EVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 350 gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
+..+|++|... .+...+ .....+.+.+++.++..+++.+.... .. .+....+++.++|.|..+..+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66677777665 333222 23467999999999999999876411 11 122267899999999866544
No 100
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.00051 Score=77.34 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=129.4
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
.+..++||+.+++.+.+++...- ......-+-|.|.+|.|||.+...|+.+..-...=..+++++...=-....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45678999999999999996543 2334567789999999999999999986532221124466655543466778888
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHhhcccccc-cCCCCcEEEEEccch--hhhhh-
Q 042986 292 ILRSITKQTIDNSDLNLLQEELKKQLSRK--KFLLVLDDVWNENYNDWVDMSCPFE-AGAPGSKIIVTTRNR--EVAAI- 365 (1485)
Q Consensus 292 il~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LivlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtr~~--~v~~~- 365 (1485)
|...+...........+.++.+.+..... -+|+|+|.++.-....-..+...|. ..-+++|+|+.---. +..+.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88777333222222255566666666543 5999999985432111112222222 223577766543211 11111
Q ss_pred ---c-----CCcCceeCCCCChhhHHHHHHhcccCCCC-CCCChhHHHHHHHHHHHcCCChhHHHHHHhHh
Q 042986 366 ---M-----GTVPAYQLKNLSIDDCLSVFAQHSLGTRD-FSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLL 427 (1485)
Q Consensus 366 ---~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 427 (1485)
+ .....+...|-+.++..++|.++.-.... ...+..++-.|++++...|.+--|+-+.-+++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1 12246778899999999999998643222 12233555566666666666667766665544
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.80 E-value=0.00035 Score=73.76 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCC
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDF 396 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 396 (1485)
+.+-++|+|++.......++.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456789999997665555666766665555566777776643 332222 23357999999999999888876 1 1
Q ss_pred CCChhHHHHHHHHHHHcCCChh
Q 042986 397 SSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 397 ~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
. .+.+..|++.++|.|.
T Consensus 170 --~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPG 186 (188)
T ss_pred --C---HHHHHHHHHHcCCCcc
Confidence 1 3567889999999885
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00013 Score=86.49 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=110.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE-EcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC-VSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 292 (1485)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-+.......|.. +..+...-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999999999988885431 234577899999999999999887432211111111110 00000000111111
Q ss_pred HHhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-cchhh
Q 042986 293 LRSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-RNREV 362 (1485)
Q Consensus 293 l~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 362 (1485)
...... ........+++.+..... ..+++-++|+|++.......++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 111000 000111233333322111 23456688999997665556777776666545566666555 44444
Q ss_pred hhhcC-CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHH
Q 042986 363 AAIMG-TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLG 424 (1485)
Q Consensus 363 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~ 424 (1485)
...+. ....+++.+++.++..+.+...+-..+. . --.+.+..|++.++|.+- |+..+-
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~---i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-S---VDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43321 2347899999999988877775532211 1 114667789999999774 444433
No 103
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=8.4e-05 Score=85.68 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=74.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++......+|+.+.||.+++.++..+.+..+-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999999643 4677899999999999999998665556788899999999888776654221
Q ss_pred HhhcCCCCCCC-CHHHHHHHHHHHhC--CCcEEEEEeCCCCCCh
Q 042986 294 RSITKQTIDNS-DLNLLQEELKKQLS--RKKFLLVLDDVWNENY 334 (1485)
Q Consensus 294 ~~l~~~~~~~~-~~~~~~~~l~~~l~--~kr~LivlDdv~~~~~ 334 (1485)
.....-. ...-..+.+.+.-. ++++++|+|++...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 1111100 00112222333222 4689999999976653
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=7.6e-05 Score=85.63 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=112.5
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--ccCeeEEEEEcCccCHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY--YFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
...++|.+...+.+...+..+. -...+.|+|..|+||||+|+.+.+..--.. .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4568999999999999995442 245688999999999999988876432110 011100 000111111222
Q ss_pred HHHHh-------hcCCC-------CCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCCCc
Q 042986 291 IILRS-------ITKQT-------IDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGS 351 (1485)
Q Consensus 291 ~il~~-------l~~~~-------~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs 351 (1485)
.+... +.... ...-..+++. .+.+.+ .+++-++|+|++...+....+.+...+..-..+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 10000 0112234433 333333 3567799999998776656666666554433445
Q ss_pred EE-EEEccchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 352 KI-IVTTRNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 352 ~i-ivTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
.+ ++|++...+...+ .....+++.+++.++..+++.+.+... . -..+....|++.++|.|..+..+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 54 4444443333222 233689999999999999998743211 1 11344678899999999766544
No 105
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00031 Score=84.02 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=104.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--c-----------------Cee
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY--F-----------------DLK 274 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F-----------------~~~ 274 (1485)
.++||.+..+..+...+..+. -...+.++|++|+||||+|+.+.+....... + ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999888888887774431 2356789999999999999999874321100 0 001
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-----hCCCcEEEEEeCCCCCChhhHhhcccccccCCC
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAP 349 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~ 349 (1485)
..+..+.. ...+++. .+.+. ..+++-++|+|++..-.....+.+...+.....
T Consensus 89 ~el~aa~~---------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDAASN---------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeCccc---------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11111111 1122222 11111 234567999999965443444555555543333
Q ss_pred CcEEEE-Eccchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC-ChhHHHHHHhH
Q 042986 350 GSKIIV-TTRNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG-LPLAAKTLGGL 426 (1485)
Q Consensus 350 gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~~ 426 (1485)
...+|+ ||....+...+ .....+++.+++.++....+.+.+...+. .-+ .+....|++.++| .+.|+..+..+
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444 44333443333 23457899999999988888876643221 111 3456678887765 56777766654
Q ss_pred h
Q 042986 427 L 427 (1485)
Q Consensus 427 l 427 (1485)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 3
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0004 Score=85.00 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=107.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc--CeeEEEEEcCccCHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF--DLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~ 291 (1485)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+..--.... ..... ...+.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 458999999999999885442 23567899999999999999986532111000 00000 00011111111
Q ss_pred HHHhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-cchh
Q 042986 292 ILRSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-RNRE 361 (1485)
Q Consensus 292 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 361 (1485)
|-..-.. ........+++.+.+... ..++.-++|+|+|.......+..+...+..-....++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000000 000112233333222211 12445588999998877667777776665544555665554 4344
Q ss_pred hhhh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 362 VAAI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 362 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
+... ......+++++++.++..+.+.+.+-..+. .. -.+....|++.++|.+--+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PA---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 4322 233468999999999998888876533221 11 1355677888999877443
No 107
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2e-05 Score=59.14 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=31.4
Q ss_pred CcccEEeccCCcccccChhhhccccccEecccccccccccc
Q 042986 649 RNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLC 689 (1485)
Q Consensus 649 ~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp 689 (1485)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4789999999999999888999999999999988 455443
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.74 E-value=0.0002 Score=76.91 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=97.9
Q ss_pred eeech-hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 216 VYGRE-TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 216 ~vGr~-~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
++|.. +........+... .+.....+.|+|..|+|||.|.+++++.......-..++++ +..+..+.+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHH
Confidence 45643 2333444445443 22244567899999999999999999854322111234444 34455566666
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-hhHhhccccccc--CCCCcEEEEEccchh---------h
Q 042986 295 SITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-NDWVDMSCPFEA--GAPGSKIIVTTRNRE---------V 362 (1485)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-~~~~~l~~~l~~--~~~gs~iivTtr~~~---------v 362 (1485)
.+.. ...+ .+++.+++ -=++++||++.-.. ..|.+....+-+ ...|.+||+|++... +
T Consensus 82 ~~~~-----~~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRD-----GEIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHT-----TSHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHc-----ccch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 5543 1222 33444443 34788999965322 223332222111 134678999996532 2
Q ss_pred hhhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 363 AAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 363 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
...+...-.++++++++++-.+++.++|...+- .- -++++.-|++.+.+..-.+.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~l---~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-EL---PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-CC---cHHHHHHHHHhhcCCHHHHH
Confidence 233344557999999999999999988753221 11 24666667777766554443
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00046 Score=83.52 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=104.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|..++..+. -...+-++|+.|+||||+|+.+.+..--...+.. .+.+.-...+.|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHh
Confidence 468999999999999995442 2345679999999999999988874321111100 0000000011110
Q ss_pred HhhcC-----CCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEcc-chhhh
Q 042986 294 RSITK-----QTIDNSDLNLLQEELKK----QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTR-NREVA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 363 (1485)
..-.. ........+++.+.+.. -..++.-++|+|+|..........+...+..-....++|++|. ...+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 00000 00011222222222211 1234566899999987666666666666655455676666554 33333
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
..+ .....+++++++.++....+.+.+-..+. ... .+....|++.++|.+--+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHH
Confidence 222 23357889999999877766555422221 111 234567888899977443
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.00056 Score=74.42 Aligned_cols=203 Identities=17% Similarity=0.157 Sum_probs=121.0
Q ss_pred Cceeech---hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc----CeeEEEEEcCccCHH
Q 042986 214 AKVYGRE---TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF----DLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~---~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~ 286 (1485)
+.+||-. +.++++.+++... .....+-+.|||.+|+|||++++++....-....- -.++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3456643 3345555555433 34566778999999999999999998643221111 146667778889999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCC------ChhhHhhcccccccCCCCcEEEEEccc
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSR-KKFLLVLDDVWNE------NYNDWVDMSCPFEAGAPGSKIIVTTRN 359 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LivlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~ 359 (1485)
.+...|+.+++...........+.....+.++. +--+||+|.+.+. .+.+.-.....+.+.-.=+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998776666666665555555543 3458899999441 112222223334333344566776665
Q ss_pred hhhhhhc-----CCcCceeCCCCChhh-HHHHHHhcc--cCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 360 REVAAIM-----GTVPAYQLKNLSIDD-CLSVFAQHS--LGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 360 ~~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
..-+-.. ....++.+.....++ ...|+.... ..-.. ..+-...++++.|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 3322111 112456666666554 444443321 11111 122344689999999999987433
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.72 E-value=0.00018 Score=84.70 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=99.1
Q ss_pred CCceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
..+++|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----
Confidence 457899999999998877422100 11234568899999999999999999843 3333 22211
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------h---hhHhhcccccc--cCCC
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-----------Y---NDWVDMSCPFE--AGAP 349 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-----------~---~~~~~l~~~l~--~~~~ 349 (1485)
..+..... + .....+...+...-...+.+|++||++... . ..+..+...+. ....
T Consensus 190 ~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111100 0 011112222222223467899999986421 0 11222221121 1124
Q ss_pred CcEEEEEccchhhh-hhc----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 350 GSKIIVTTRNREVA-AIM----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 350 gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
+.+||.||...... ..+ .-...+.+...+.++..++|..++.+..- ..... ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 66788888754321 111 12346889999999999999988754321 11122 345666777754
No 112
>PRK05642 DNA replication initiation factor; Validated
Probab=97.72 E-value=0.00036 Score=76.01 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=88.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3578899999999999999998743222 13456665422 1111 01 122222222
Q ss_pred cEEEEEeCCCCCC-hhhHhh-ccccccc-CCCCcEEEEEccchh---------hhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNEN-YNDWVD-MSCPFEA-GAPGSKIIVTTRNRE---------VAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
. ++|+||+.... ...|.. +...+.. ...|.+||+|++... +...+....+++++++++++-.+++.+
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889995331 134443 2222211 234677888887532 122223345789999999999999987
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
++...+ ..-+ +++..-|++.+.|..-++..
T Consensus 178 ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 178 RASRRG-LHLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 664322 1112 46777888888887655443
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00064 Score=83.49 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=110.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC--eeEEEEEcCccCHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD--LKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 291 (1485)
.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+......... ...+-... .-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHH
Confidence 468999999999999995442 245678999999999999999987432211110 00000000 0011112
Q ss_pred HHHhhcCC-----CCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-cchh
Q 042986 292 ILRSITKQ-----TIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-RNRE 361 (1485)
Q Consensus 292 il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 361 (1485)
|....... .......+++.+.+... ..+++-++|+|++........+.+...+..-..++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22111100 00112233333222111 23455678999997766555666666665444566665544 4444
Q ss_pred hhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 362 VAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 362 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+...+ .....+++.+++.++....+.+.+-..+. .. -.+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 43332 23457999999999998888876533221 11 135667789999998855443
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=9.8e-06 Score=97.29 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=77.8
Q ss_pred cccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccc
Q 042986 620 PKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLH 699 (1485)
Q Consensus 620 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 699 (1485)
..+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..+..|+.|++++| .+..+ .++..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhc-cCCccchhhh
Confidence 345578889999999999988876688899999999999999888 44777888999999998 55555 3466788999
Q ss_pred eeeccCCCCccccccc-ccCccccccc
Q 042986 700 HLKNSDTDSLEEMPLG-IGKLTCLRTL 725 (1485)
Q Consensus 700 ~L~l~~~~~l~~~p~~-i~~L~~L~~L 725 (1485)
.+++++|. +..+... ...+.+|..+
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHH
Confidence 99998887 5555432 3555555555
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.65 E-value=0.00048 Score=75.29 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=84.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|..|+|||+||+.+++....+ .. ...+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HH----H------------------hhc-cc
Confidence 4577899999999999999999843211 11 23344332210 00 0 011 22
Q ss_pred cEEEEEeCCCCCChhhHhhccccccc-CCCCc-EEEEEccchhhhh--------hcCCcCceeCCCCChhhHHHHHHhcc
Q 042986 321 KFLLVLDDVWNENYNDWVDMSCPFEA-GAPGS-KIIVTTRNREVAA--------IMGTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 321 r~LivlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.-++|+||+.......-..+...+.. ...|. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34788999954322222223222221 12344 3666666433221 22223578999999988777766543
Q ss_pred cCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHh
Q 042986 391 LGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLL 427 (1485)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 427 (1485)
-..+ ...+ ++....+++.+.|.+..+..+-..+
T Consensus 171 ~~~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERG-LQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 1111 3567778888999998877665554
No 116
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00088 Score=81.32 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=111.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+..--....+. ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 457899888888888885431 2467778999999999999998874321110000 0001001111111
Q ss_pred HhhcCC-----CCCCCCHHHHH---HHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhh
Q 042986 294 RSITKQ-----TIDNSDLNLLQ---EELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~~---~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 363 (1485)
...... .......+++. +.+.. -..+++-+||+|++.......+..+...+..-.....+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 00011122222 22211 12356679999999776655666676666443345555555544 4444
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHhHh
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGGLL 427 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~l 427 (1485)
..+ .....+++.+++.++....+...+...+. .. -.+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332 23457899999999998888875543221 11 1356777888999954 7777776554
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00079 Score=82.17 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=106.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCee
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-------------------YFDLK 274 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 274 (1485)
.++||.+..++.+..++..+. -...+.++|..|+||||+|+.+.+...-.. .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999985432 235567999999999999999876432110 01111
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCC
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPG 350 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~g 350 (1485)
+++..+. ....+++.+.+... ..+++-++|+|++..........+...+..-...
T Consensus 91 ~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1221111 11222222222111 1356679999999776555566666666544445
Q ss_pred cEEEEEccc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHh
Q 042986 351 SKIIVTTRN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGG 425 (1485)
Q Consensus 351 s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~ 425 (1485)
..+|++|.+ ..+...+ .....+++++++.++..+.+.+.+...+ ... -.+....|++.++|.+- |+..+-.
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~---~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPF---DATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666655543 3333221 2235789999999998887776543222 111 13455778889999774 4444433
No 118
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.61 E-value=1.2e-05 Score=86.36 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred cCCCccEEEeecCCCccc----cCcCCCCCCCcCEEEeeCCC
Q 042986 1247 NNTSLEVIEIVSCENLKI----LPHGLHKLWRLQEIDIHGCE 1284 (1485)
Q Consensus 1247 ~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~ 1284 (1485)
..++|++|.+.+|.+... +-..+...+.|..|+|++|.
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 356666666666655431 12233446667777777764
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0011 Score=81.50 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=108.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE-EcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC-VSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 292 (1485)
.++||.+..+..+..++..+. -...+.++|+.|+||||+|+.+.+..--...++...|-. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999988885431 235578999999999999988876432211111001110 00000000111111
Q ss_pred HHhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchhh
Q 042986 293 LRSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNREV 362 (1485)
Q Consensus 293 l~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 362 (1485)
...-.. ........+++.+.+... ..+++-++|+|+++.......+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111233433322222 234556789999977655556667666654444555554 4444444
Q ss_pred hhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHH
Q 042986 363 AAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLG 424 (1485)
Q Consensus 363 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 424 (1485)
...+ .....+++.+++.++....+.+.+-..+. .. -.+.+..|++.++|.. .|+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4332 34568999999999988777765432221 11 1356777899999955 4444443
No 120
>CHL00181 cbbX CbbX; Provisional
Probab=97.58 E-value=0.0018 Score=72.56 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=71.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++.. + +.....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 35778999999999999999774321111112225555421 2 222221111 11122233332 22
Q ss_pred EEEEEeCCCCC---------ChhhHhhcccccccCCCCcEEEEEccchhhhhhc--------CCcCceeCCCCChhhHHH
Q 042986 322 FLLVLDDVWNE---------NYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIM--------GTVPAYQLKNLSIDDCLS 384 (1485)
Q Consensus 322 ~LivlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 384 (1485)
-+|++|++..- .......+...+.....+.+||+++....+.... .-...+.+.+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999542 1111222333333334456777777543332211 123468899999999888
Q ss_pred HHHhccc
Q 042986 385 VFAQHSL 391 (1485)
Q Consensus 385 lf~~~a~ 391 (1485)
++.+.+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 8887764
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.5e-06 Score=90.41 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=71.4
Q ss_pred cccEEEEeccCCcc-hHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC--CCcCccccceE
Q 042986 1226 ALKFLSIWHCSRLE-SIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE--GGLLSAKLKRL 1302 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~--~~~~~~~L~~L 1302 (1485)
.|+.|||+...+.. .+...+..|..|+.|.|.++.....+...++.=.+|+.|+|+.|..++.... .+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666766654443 2233345566666666666655555544555555666666666654433221 13344555555
Q ss_pred EEccccCccccccC-C-CCCCccCEEEeeCCCCCc---cccCCCCCCCCcceEEeCCCCCCccccccCcCCcccccccee
Q 042986 1303 VIGGCKKLEALPLG-M-HHLTCLQHLTIGGVPSLL---CFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~-~-~~l~~L~~L~l~~~~~l~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 1377 (1485)
+++.|...+..-.. + .--++|+.|+++||...- .+..-....++|.+|||++|..+++ .....|-.++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence 55555433322100 0 011345555555543210 0000001134555555555554443 1112244455555555
Q ss_pred ecccc
Q 042986 1378 ISGCD 1382 (1485)
Q Consensus 1378 l~~n~ 1382 (1485)
++.|-
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 55553
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0011 Score=78.41 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=104.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc------cccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ------YYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+++..+ .-.+.+.++|+.|+||||+|+.+.+..... ..|...+ +.+...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~----- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA----- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-----
Confidence 45789999999999999543 124678899999999999999987743211 1121111 111100
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-cchhh
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKK----QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-RNREV 362 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 362 (1485)
.....+++.+.+.+ -..+++-++|+|++.......+..+...+........+|++| +...+
T Consensus 86 --------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 86 --------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred --------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 01111222221111 012345589999996554445555554443333345555554 33333
Q ss_pred hhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHh
Q 042986 363 AAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGG 425 (1485)
Q Consensus 363 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~ 425 (1485)
...+ .....+++.+++.++....+...+...+- ..+ .+.+..+++.++|.+- |+..+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFE---DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3222 23357899999999988888876643221 111 3567778888998654 4444443
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0008 Score=83.82 Aligned_cols=193 Identities=12% Similarity=0.132 Sum_probs=108.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+......... .....+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988885431 235667999999999999999986432111000 000111112222222
Q ss_pred HhhcCC-----CCCCCCHHHHHH---HHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhh
Q 042986 294 RSITKQ-----TIDNSDLNLLQE---ELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~~~---~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 363 (1485)
...... .......+++.+ .+... ..+++-++|+|++........+.+...+........+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 001122233322 22111 1245678999999665545566666655544455666665543 3333
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
..+ .....+++..++.++....+.+.+...+. ... .+.+..|++.++|.+-.+.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~---~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLE---PGALEAIARAATGSMRDAE 219 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 322 23357889999999988888776543221 111 3567789999999885444
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0021 Score=79.40 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=107.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc---cC----eeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY---FD----LKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~----~~~wv~~s~~~~~~ 286 (1485)
.+++|.+..++.+..++..+. -...+-++|+.|+||||+|+.+....--... +. |.. +....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~--~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE--NVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH--hhcCCCcEE
Confidence 468999999999999995442 2456678999999999999998763211100 00 000 000111100
Q ss_pred HHHHHHHHhhcCCC-CCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEE-EEccchhhh
Q 042986 287 WLTTIILRSITKQT-IDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKII-VTTRNREVA 363 (1485)
Q Consensus 287 ~~~~~il~~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~ 363 (1485)
.+.+.. ....+..++++.+... ..+++-++|+|++.......+..+...+..-.....+| +||+...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 0111122333222211 23566688999997665556666766554433455544 455555554
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHH
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLG 424 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 424 (1485)
.. ......+++.+++.++..+.+...+-..+. .. -.+.+..|++.++|.+ .|+..+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 233468999999999998888765432221 11 1345677899999866 4444443
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0012 Score=69.31 Aligned_cols=126 Identities=24% Similarity=0.291 Sum_probs=72.2
Q ss_pred ccCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 211 VNEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 211 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
+.-.+++|.+.+++.+++-...-- .+....-+-+||..|.|||++++++.+....++ .+ -|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH--------
Confidence 445679999999998876553221 122344566899999999999999998433322 11 1222221
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhcccccccC----CCCcEEEEEccchhhh
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE-NYNDWVDMSCPFEAG----APGSKIIVTTRNREVA 363 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~-~~~~~~~l~~~l~~~----~~gs~iivTtr~~~v~ 363 (1485)
+-.++..+.+.++. ...||+|.+||+.-+ .......+...+..+ ..+..|.+||..+++.
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 12233344444442 357999999998432 223455555544321 2233455566555543
No 126
>PF14516 AAA_35: AAA-like domain
Probab=97.50 E-value=0.0091 Score=68.85 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=118.4
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-----cCHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-----FDVIW 287 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~ 287 (1485)
.+-.|+|...-+++.+.+... -..+.|.|+-.+|||+|...+.+..+.+ .+ .++++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 344678886667777777542 2588999999999999999998755433 23 4567776542 24555
Q ss_pred HHHHHHHhhcCCCCC-----------CCCHHHHHHHHHHHh---CCCcEEEEEeCCCCCCh-----hhHhhcccccccCC
Q 042986 288 LTTIILRSITKQTID-----------NSDLNLLQEELKKQL---SRKKFLLVLDDVWNENY-----NDWVDMSCPFEAGA 348 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LivlDdv~~~~~-----~~~~~l~~~l~~~~ 348 (1485)
.++.++..+..+-.- ..........+.+.+ .+++.+|++|+|+..-. .++..+.+.+....
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 565555555432210 112223344444432 26899999999964311 12222222221111
Q ss_pred -----CCc-EE-EEEccchhhhhhc-----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC
Q 042986 349 -----PGS-KI-IVTTRNREVAAIM-----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL 416 (1485)
Q Consensus 349 -----~gs-~i-ivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 416 (1485)
... ++ ++.+......... .....++|.+++.+|...|..++... . . ....++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~--~---~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F--S---QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C--C---HHHHHHHHHHHCCC
Confidence 011 22 2222111111111 11246899999999999999887422 1 1 12278899999999
Q ss_pred hhHHHHHHhHhhcC
Q 042986 417 PLAAKTLGGLLRGK 430 (1485)
Q Consensus 417 PLai~~~~~~l~~~ 430 (1485)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998764
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.50 E-value=0.0005 Score=75.35 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
++.+.+|+.++..+..++...+ ..-+..|.|.|-.|.|||.+.+++++.... ..+|+++-+.|....++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHH
Confidence 4568899999999998885442 223566789999999999999999986522 25899999999999999999
Q ss_pred HHhhcCCCCCC-------CCHHHHHHHHHH--HhC--CCcEEEEEeCCCCCChhhHhhccc----cccc-CCCCcEEEEE
Q 042986 293 LRSITKQTIDN-------SDLNLLQEELKK--QLS--RKKFLLVLDDVWNENYNDWVDMSC----PFEA-GAPGSKIIVT 356 (1485)
Q Consensus 293 l~~l~~~~~~~-------~~~~~~~~~l~~--~l~--~kr~LivlDdv~~~~~~~~~~l~~----~l~~-~~~gs~iivT 356 (1485)
+.+......+. .+.......+.+ ... ++.++||||+++.- .+.+...- .+.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985222111 112222333333 122 46899999999543 22222110 0110 1112334444
Q ss_pred ccchhhhhh---cCCcC--ceeCCCCChhhHHHHHHhc
Q 042986 357 TRNREVAAI---MGTVP--AYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 357 tr~~~v~~~---~~~~~--~~~l~~L~~~~~~~lf~~~ 389 (1485)
+-....... +|+.. ++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 433322222 24333 4566777888888888664
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.48 E-value=0.0011 Score=74.00 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=79.1
Q ss_pred ceeechhHHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 215 KVYGRETEKRDIVELLLK---------DDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
.++|.++.+++|.+.... ......+...-+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478988777766543211 10001234456789999999999999999864211111111123333221
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hhhHhhcccccccCCCCcEEEEEc
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN--------YNDWVDMSCPFEAGAPGSKIIVTT 357 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 357 (1485)
++. .... ........+.+.+. ..-+|++|++..-. ....+.+...+......-.+|+++
T Consensus 84 -~l~----~~~~-----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYI-----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhc-----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 1111 01112222333322 12488999996421 112233333333333333455555
Q ss_pred cchhhhh------hc-CC-cCceeCCCCChhhHHHHHHhccc
Q 042986 358 RNREVAA------IM-GT-VPAYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 358 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
....... .+ .. ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332211 01 11 23578888998888888887653
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.0016 Score=77.93 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
..-+.|+|..|+|||.|++.+.+.......-..+++++ ..++...+...+.... ...+.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 45688999999999999999998432211112233443 3456666666654211 112334444443
Q ss_pred cEEEEEeCCCCCCh-hhHh-hccccccc-CCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENY-NDWV-DMSCPFEA-GAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
.-++|+||+..... ..+. .+...+.. ...|..||+|+... .+...+...-.+++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34888999954321 1222 22222211 12355788886543 2233334455788999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
++-..+- . ..--+++..-|++.++|.|=.+.-+
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~ga 319 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGS 319 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHH
Confidence 8743221 0 0112577888999999998666543
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0016 Score=78.07 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=104.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---------------------cccC
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---------------------YYFD 272 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 272 (1485)
.+++|.+..++.+.+++..+. -...+.++|..|+||||+|+.+.+..--. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999985432 23567789999999999998887632111 0111
Q ss_pred eeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCc
Q 042986 273 LKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGS 351 (1485)
Q Consensus 273 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs 351 (1485)
|+.+....+ ...++..++.+.+.. -..+++-++|+|++........+.+...+.....+.
T Consensus 92 ---~~~i~g~~~----------------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 ---VLEIDGASH----------------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred ---eEEeecccc----------------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111000 000111112221111 123566788999996554444555655555444456
Q ss_pred EEEEEcc-chhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHH
Q 042986 352 KIIVTTR-NREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLG 424 (1485)
Q Consensus 352 ~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 424 (1485)
.+|++|. ...+...+ .....+++.++++++....+.+.+-..+. .. -.+.+..|++.++|.+ .|+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666553 33333222 23457999999999988887775532211 11 1356778999999966 4544443
No 131
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0027 Score=77.64 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=111.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-....+ +-.+.. -...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhh
Confidence 468999999999999995432 235578999999999999999887432111000 000000 00011111
Q ss_pred Hh---------hcCCC-CCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchh
Q 042986 294 RS---------ITKQT-IDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNRE 361 (1485)
Q Consensus 294 ~~---------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 361 (1485)
.. +.... ...++..++++.+... ..+++-++|+|++........+.++..+..-.....+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 00000 0111222222222211 234566889999977666667777666665445666555 544444
Q ss_pred hhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHhHh
Q 042986 362 VAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGGLL 427 (1485)
Q Consensus 362 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~l 427 (1485)
+...+ .....+++.+++.++..+.+.+.+...+. ..+ .+....|++.++|.+ -|+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 33467999999999988888775533221 111 345667888999976 4555555444
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0028 Score=78.67 Aligned_cols=174 Identities=13% Similarity=0.164 Sum_probs=106.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---------------------ccccC
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---------------------QYYFD 272 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 272 (1485)
.+++|.+..++.+..++..+. -...+.++|..|+||||+|+.+.....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999995432 2456789999999999999887763211 11222
Q ss_pred eeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCC
Q 042986 273 LKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGA 348 (1485)
Q Consensus 273 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~ 348 (1485)
. ..+..+.. ...+++.+.+.+. ..+++-++|+|++..-....++.+...+..-.
T Consensus 92 ~-~~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 11111111 1122332222111 12345588999997766666777777665544
Q ss_pred CCcEEEE-Eccchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 349 PGSKIIV-TTRNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 349 ~gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
.++.+|+ ||+...+...+ .....+++.+++.++....+.+.+-..+- ... .+.+..|++.++|..-
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHH
Confidence 5666555 54545554433 33467999999999998888775533221 111 2456778899998664
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0023 Score=81.55 Aligned_cols=194 Identities=13% Similarity=0.070 Sum_probs=110.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC---e-----eEEEEEc--Ccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD---L-----KAWTCVS--DDF 283 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~~s--~~~ 283 (1485)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-..... | +.++..+ ...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999999999999985432 235678999999999999999876432111100 0 0000000 001
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCHHHHHH---HHH-HHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc-c
Q 042986 284 DVIWLTTIILRSITKQTIDNSDLNLLQE---ELK-KQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT-R 358 (1485)
Q Consensus 284 ~~~~~~~~il~~l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r 358 (1485)
|+.. +.. .....++++.+ .+. .-..+++-++|||++.......++.|+..+..-...+.+|++| .
T Consensus 90 dv~e--------ida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 90 DVTE--------IDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cEEE--------ecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1000 000 00112333322 111 1123556678899998777677777777776555566666555 4
Q ss_pred chhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHhH
Q 042986 359 NREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGGL 426 (1485)
Q Consensus 359 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~~ 426 (1485)
...+...+ .....|++..++.++..+++.+.+-..+ ... -.+....|++.++|.+. ++..+-.+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~i---d~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPV---EPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444433 2346799999999998888776542221 111 13455678899999774 33333333
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.43 E-value=0.0021 Score=72.15 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKF 322 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 322 (1485)
-+.++|.+|+||||+|+.+.......+......|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 577999999999999977766332222222223454442 11 222222211 12222233332 235
Q ss_pred EEEEeCCCCC---------ChhhHhhcccccccCCCCcEEEEEccchhhhhhcC--------CcCceeCCCCChhhHHHH
Q 042986 323 LLVLDDVWNE---------NYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMG--------TVPAYQLKNLSIDDCLSV 385 (1485)
Q Consensus 323 LivlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 385 (1485)
+|++|++..- ....+..+...+.....+-+||+++.......... -...+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999522 11223334444444444567777765432221111 124688999999999998
Q ss_pred HHhcc
Q 042986 386 FAQHS 390 (1485)
Q Consensus 386 f~~~a 390 (1485)
+.+.+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88765
No 135
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=1.3e-05 Score=73.81 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=56.4
Q ss_pred ccCCcccEEEecCCCCCCCCCccC-CCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCcccccee
Q 042986 623 FKLQRLRVFSLRGYHNPELPDSIG-NLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHL 701 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 701 (1485)
.+...|...+|++|.+.++|+.|. .++.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 345556666666666666666553 344666666666666666666666666666666666 455566666666666666
Q ss_pred eccCCCCcccccc
Q 042986 702 KNSDTDSLEEMPL 714 (1485)
Q Consensus 702 ~l~~~~~l~~~p~ 714 (1485)
+..+|. ...+|.
T Consensus 129 ds~~na-~~eid~ 140 (177)
T KOG4579|consen 129 DSPENA-RAEIDV 140 (177)
T ss_pred cCCCCc-cccCcH
Confidence 666555 444443
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.40 E-value=0.00091 Score=71.25 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=111.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEE-EEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAW-TCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i 292 (1485)
.+++|.+..+..+.+.+... ..++...+|++|.|||+-|..+....--...|.+++- .++|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 46889999999999888653 4578889999999999998888764333445554442 3344322111 1000
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHh--CCCc-EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhhhhc-C
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQL--SRKK-FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVAAIM-G 367 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~ 367 (1485)
...+...+.....+.. ..++ -.||||+++....+.|..+...+......+|.|..+.. ..+...+ .
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0111111111110000 0123 47889999888888999998877776677775555443 2222211 2
Q ss_pred CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC
Q 042986 368 TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL 416 (1485)
Q Consensus 368 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 416 (1485)
....+..++|.+++...-+...|-..+-..+ .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 2346899999999988888777644332222 35566788889884
No 137
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.39 E-value=2.6e-05 Score=93.61 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=80.5
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+..+..++++.|.+..+-..++.+.+|.+|++.+|+|+.+...+..+.+|++|++++| .+..+ .++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 45666777788888888666688999999999999999998766899999999999999 67776 45888999999999
Q ss_pred cCCCCcccccccccCcccccccC
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTLC 726 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L~ 726 (1485)
.+|. +..++ ++..+++|+.++
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9998 66554 455566666663
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0053 Score=74.02 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=102.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cc----------------ccCee
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---QY----------------YFDLK 274 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~ 274 (1485)
.+++|.+.-+..+..++..+. -.....++|+.|+||||+|+.+.....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 458899999999999995432 2355678999999999999998763210 00 00001
Q ss_pred EEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE
Q 042986 275 AWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI 353 (1485)
Q Consensus 275 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i 353 (1485)
.++..+... ...+...+.+.+... ..+++-++|+|++........+.+...+........+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 111110000 011112222222211 2356679999999765544555565555443445555
Q ss_pred EEEc-cchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 354 IVTT-RNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 354 ivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
|++| +...+...+ .....+++.+++.++....+.+.+-..+. .. -.+.+..|++.++|.+-.+.
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~i---d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EY---EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 5544 443333222 23357899999999988887776532221 11 13456678888999765443
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0041 Score=77.16 Aligned_cols=194 Identities=11% Similarity=0.153 Sum_probs=107.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..+..|..++..+. -...+.++|..|+||||+|+.+.+..--..... .. ......-+..+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHh
Confidence 458899999999999886431 234677899999999999999987432111000 00 00111111222222
Q ss_pred HhhcCC-----CCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhh
Q 042986 294 RSITKQ-----TIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 363 (1485)
...... .......+++.+.+... ..+++-++|+|++.......+..+...+..-.....+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110 00112233333332211 1245568899999776656667776666543344555544443 3333
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
..+ .....+++..++.++....+.+.+...+. ... .+.+..|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 322 23456888899998888777665432211 111 2457788999999875443
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0048 Score=74.23 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=106.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+...+..+. -..+..++|..|+||||+|+.+.+..--...-+. .+...-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 468999999999999885432 2456689999999999999987763210000000 0000000000000
Q ss_pred HhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhh
Q 042986 294 RSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 363 (1485)
..... ........+++.+.+... ..+++-++|+|++..........++..+..-.+.+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000 000001133333333221 12456688999997766656666666665545567766666553 232
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
..+ .....+++.+++.++..+.+.+.+-..+. .. -.+.+..|++.++|.+--+.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i---~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SY---EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHH
Confidence 222 23457999999999988888765532221 11 13567789999999884443
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.34 E-value=0.0024 Score=76.53 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|..|+|||.||+.+++....+..=..+++++ ..++...+...+... ..+.. .+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~~----~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEEF----KEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHHH----HHHHHh-
Confidence 45688999999999999999998543221112344553 233444555554321 22222 333332
Q ss_pred cEEEEEeCCCCCChh-hH-hhccccccc-CCCCcEEEEEccch-h--------hhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENYN-DW-VDMSCPFEA-GAPGSKIIVTTRNR-E--------VAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
.-+||+||+...... .+ +.+...+.. ...|..+|+|+... . +...+.....+++.+.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 238889999643211 11 112221211 12345677877642 1 222222334689999999999999998
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
++...+. ..+ +++...|++.+.|..-.
T Consensus 280 ~~~~~~~-~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 280 KAEEEGL-ELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHH
Confidence 8743221 111 46677788888876643
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.34 E-value=7.3e-06 Score=95.63 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=44.1
Q ss_pred ccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccCCCCcccccc
Q 042986 651 LRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTDSLEEMPL 714 (1485)
Q Consensus 651 Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 714 (1485)
|.+-+.++|.+..+-.++.-|+.|+.|||++| .+.... .+..|++|+|||+++|. +..+|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~ 226 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQ 226 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccc
Confidence 55556667777777777777888888888887 444443 67778888888888887 666663
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.31 E-value=0.0016 Score=84.30 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=83.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEE-EEEcCccCHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAW-TCVSDDFDVIWL 288 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~~s~~~~~~~~ 288 (1485)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+...... -.+..+| +.++. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h
Confidence 468999999999999996542 23445999999999999999987432111 1122333 22211 0
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC-------hhhHhhcccccccCCCC-cEEEEEccc
Q 042986 289 TTIILRSITKQTIDNSDLNLLQEELKKQL-SRKKFLLVLDDVWNEN-------YNDWVDMSCPFEAGAPG-SKIIVTTRN 359 (1485)
Q Consensus 289 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~~-------~~~~~~l~~~l~~~~~g-s~iivTtr~ 359 (1485)
. .+......-.+.+...+.+.- .+++.+|++|++..-. ..+-..+..+.. ..| -++|-||..
T Consensus 255 ----~---ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~ 325 (852)
T TIGR03345 255 ----Q---AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTW 325 (852)
T ss_pred ----h---cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCH
Confidence 0 000000000112222222221 2468999999984321 111111222222 233 355555554
Q ss_pred hhhhhhc-------CCcCceeCCCCChhhHHHHHHhc
Q 042986 360 REVAAIM-------GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 360 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
.+....+ .....+.+++++.++..+++...
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 3321111 22357999999999999997543
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.31 E-value=0.0013 Score=84.57 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=83.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---ccc-CeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---YYF-DLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~~s~~~~~~~~~ 289 (1485)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.+.+..... ..+ +..+|.- +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH-
Confidence 368999999999999986542 2334689999999999999998753211 111 3334421 11111
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC--------hhhHhhcccccccCCCCc-EEEEEccc
Q 042986 290 TIILRSITKQTIDNSDLNLLQEELKKQL-SRKKFLLVLDDVWNEN--------YNDWVDMSCPFEAGAPGS-KIIVTTRN 359 (1485)
Q Consensus 290 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~~--------~~~~~~l~~~l~~~~~gs-~iivTtr~ 359 (1485)
+.. ... ..+.++....+-+.+ +.++.+|++|++..-. ..+-..+..+.. ..|. ++|-+|..
T Consensus 250 ---~a~---~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LAG---TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTY 320 (731)
T ss_pred ---hhh---ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCH
Confidence 110 000 012222222222222 3468999999985210 011112222211 2232 44444443
Q ss_pred hhhhhh-------cCCcCceeCCCCChhhHHHHHHhcc
Q 042986 360 REVAAI-------MGTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 360 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.+.... ......+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 222111 1123578999999999999988643
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=4.1e-06 Score=97.60 Aligned_cols=126 Identities=22% Similarity=0.206 Sum_probs=86.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
.|.+.+.++| .+..+..++.-++.|+.|+|++|+....- .+..|+.|++|||+.| .+..+|........|..|.++
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence 3666666666 45566677888889999999998877643 6788899999999998 466666543333358999998
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCC--CCCCCcceEEeCCCCCC
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDG--MFPTNLHSLEIDGMKIW 1358 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~~ 1358 (1485)
| |.++++- ++.++.+|+.||+++|-... +..-. ..+..|+.|+|.||+..
T Consensus 241 n-N~l~tL~-gie~LksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 N-NALTTLR-GIENLKSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred c-cHHHhhh-hHHhhhhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCccc
Confidence 8 4566664 67888899999988753321 11110 11356777777777653
No 146
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.30 E-value=0.0013 Score=77.71 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=96.5
Q ss_pred CCceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
..++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 35789999999999887632100 012345668899999999999999999843 222 233322
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHhhccccc---c--cCCC
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-----------YNDWVDMSCPF---E--AGAP 349 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-----------~~~~~~l~~~l---~--~~~~ 349 (1485)
.++. .... ......+...+...-...+.+|++||++.-. ...+..+...+ . ....
T Consensus 199 ~~l~----~~~~-----g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFI-----GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhc-----cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 1110 0111122222222223467899999995420 01111121111 1 1123
Q ss_pred CcEEEEEccchhhhh-hc-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC
Q 042986 350 GSKIIVTTRNREVAA-IM-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL 416 (1485)
Q Consensus 350 gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 416 (1485)
+.+||.||...+... .+ . -...+.+...+.++-.++|+.++.+.. ......+ ..+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVDL----EELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCCH----HHHHHHcCCC
Confidence 556777877643221 11 1 134689999999999999998764322 1112233 3455666664
No 147
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=4e-05 Score=70.79 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred cccEEEecCCCCCCCCCc---cCCCCcccEEeccCCcccccChhhh-ccccccEeccccccccccccccccCccccceee
Q 042986 627 RLRVFSLRGYHNPELPDS---IGNLRNLRYLNLSGTNIKTLPESIN-KLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLK 702 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~~lp~~---i~~L~~Lr~L~Ls~~~i~~lP~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 702 (1485)
.+..+||+.|.+..+++. +....+|...+|++|.++.+|+.|. +.+.+.+|++++| .+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 344556666665555433 3445566666677776666666654 3346666666666 5666666666667777777
Q ss_pred ccCCCCcccccccccCccccccc
Q 042986 703 NSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 703 l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
++.|. +...|+-|..|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 66666 55556656555555555
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.26 E-value=0.0048 Score=65.90 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
+.+.|+|+.|+|||+|++.+.+... .+ ++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~-----~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--AY-----IIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--CE-----Ecc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999999887432 11 111 10000 0 011 123
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-------hhhhcCCcCceeCCCCChhhHHHHHHhcccCCC
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-------VAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTR 394 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 394 (1485)
-++++||+..-+......+...+. ..|..||+|++... +...+....+++++++++++-..++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899995321111111111111 34668999887532 223334455899999999998888877654221
Q ss_pred CCCCChhHHHHHHHHHHHcCCChhH
Q 042986 395 DFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 395 ~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
...+ +++..-|++.+.|.--.
T Consensus 165 -l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 165 -VTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred -CCCC---HHHHHHHHHHccCCHHH
Confidence 1111 46677777777775433
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=6.9e-05 Score=78.48 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=107.0
Q ss_pred ccEEEEeccCCcc--hHHhhcccCCCccEEEeecCCCcc--ccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1227 LKFLSIWHCSRLE--SIVERLDNNTSLEVIEIVSCENLK--ILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1227 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
++.|.+.+|.+-. .+...-..++.++.|||.+|.+.. .+...+.++|.|++|+|+.|+....+...-.+..+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4445555554322 222222456677778887777665 334456678888888888876554443322456678888
Q ss_pred EEccccCc--cccccCCCCCCccCEEEeeCCCCC---ccccCCCCCCCCcceEEeCCCCCCccccccCcCCcccccccee
Q 042986 1303 VIGGCKKL--EALPLGMHHLTCLQHLTIGGVPSL---LCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1303 ~l~~c~~l--~~l~~~~~~l~~L~~L~l~~~~~l---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 1377 (1485)
-+.| ..+ +.....+..++.+++|+++.|.-- ..-....-..+.++.|.+..|....-......-.-+|++..+-
T Consensus 127 VLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 127 VLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 8776 222 122224556777777777765210 0000001123566777777775432111101123467788888
Q ss_pred ecccccccccccccccccccCCCCCccceeecc--cCCCCccccccccCCCCCeEeecCCCCCCCC
Q 042986 1378 ISGCDERMVVSFPLEDIGLGTTLPACLTHLDIF--NFPNLERLSSSICDQNLTSLKLKNCPKLKYF 1441 (1485)
Q Consensus 1378 l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~l 1441 (1485)
+..|++....... ....+| .+..|.+. +....-++.....++.|.-|.+++.|-...+
T Consensus 206 v~e~PlK~~s~ek-----~se~~p-~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 206 VCEGPLKTESSEK-----GSEPFP-SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eecCcccchhhcc-----cCCCCC-cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 8888754322211 011122 23333332 2223334444445677777777776655444
No 150
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.26 E-value=0.0017 Score=75.17 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+..++..+ .-..++.++|++|+||||+|+.+++.. ... ...++.+. .. ....+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHH
Confidence 46899999999999998543 234677789999999999999998743 211 22333333 11 11111111
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhH-hhcccccccCCCCcEEEEEccchh-hhhhc-CCcC
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDW-VDMSCPFEAGAPGSKIIVTTRNRE-VAAIM-GTVP 370 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~-~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 370 (1485)
..... . ..+.+.+-++|+||+......+. ..+...+.....+.++|+||.... +...+ ....
T Consensus 89 ~~~~~-------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAS-------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHH-------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11100 0 00123456789999965422222 223332333345778888886532 11111 1223
Q ss_pred ceeCCCCChhhHHHHHH
Q 042986 371 AYQLKNLSIDDCLSVFA 387 (1485)
Q Consensus 371 ~~~l~~L~~~~~~~lf~ 387 (1485)
.+.+...+.++..+++.
T Consensus 154 ~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 56666666666655544
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.24 E-value=0.00097 Score=86.79 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=83.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cccc-CeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---QYYF-DLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~~~~wv~~s~~~~~~~~~ 289 (1485)
..++||++++++++++|.... ..-+.++|.+|+|||++|+.++..... .... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 223459999999999999999875321 1111 234553 1 221111
Q ss_pred HHHHHhhcCCCCCCCCHHH-HHHHHHHHhCCCcEEEEEeCCCCC-------ChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 290 TIILRSITKQTIDNSDLNL-LQEELKKQLSRKKFLLVLDDVWNE-------NYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 290 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LivlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
.+.... .+.++ +...+.+.-+.++.+|++|++..- ...+...+..+....+ .-++|.+|....
T Consensus 248 -------ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 111111 12222 223333333456899999999321 0011112222221112 235555555544
Q ss_pred hhhhc-------CCcCceeCCCCChhhHHHHHHh
Q 042986 362 VAAIM-------GTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 362 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
..... .....+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 32211 2234678888888888777764
No 152
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0071 Score=63.95 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=94.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+|||.++-++++.=.+..... .+..+--+.++|++|.||||||.-+.+...+. +. +.-+....-..=+-.|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----ecccccccChhhHHHHH
Confidence 4699999999888766654332 45567788999999999999999999954332 21 11111111111111222
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhh-------Hhhccc-ccccCCCCcE-----------EE
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYND-------WVDMSC-PFEAGAPGSK-----------II 354 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~-------~~~l~~-~l~~~~~gs~-----------ii 354 (1485)
..+.. .=++.+|.+..-.... .+++.- .....++++| |=
T Consensus 99 t~Le~----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNLEE----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcCCc----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 22221 1233444443221100 111100 0011223333 44
Q ss_pred EEccchhhhhhcC--CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 355 VTTRNREVAAIMG--TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 355 vTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
.|||.-.+...+. -.-+.+++.-+.+|-.++..+.|..-+- .--++-+.+|+++..|-|-
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcH
Confidence 5888765543332 1235778888899988888887732211 1124668899999999994
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0033 Score=75.30 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=89.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 319 (1485)
..-+.|+|..|+|||.||+.+++.... .+.. .++|++. .++..++...+... ..++ +++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 345899999999999999999985422 2222 3455543 34555555555321 2222 3333333
Q ss_pred CcEEEEEeCCCCCC-----hhhHhhcccccccCCCCcEEEEEcc-chhh--------hhhcCCcCceeCCCCChhhHHHH
Q 042986 320 KKFLLVLDDVWNEN-----YNDWVDMSCPFEAGAPGSKIIVTTR-NREV--------AAIMGTVPAYQLKNLSIDDCLSV 385 (1485)
Q Consensus 320 kr~LivlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l 385 (1485)
+.-+|++||+.... +.++..+...+. ..|..||+||. .+.- ...+.....+++++.+.++-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 45589999996421 111212211122 23457888875 3221 12223345789999999999999
Q ss_pred HHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 386 FAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 386 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
+.+++.... ...+ .++..-|++.+.|.-
T Consensus 272 L~~~~~~~~-~~l~---~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 272 ARKMLEIEH-GELP---EEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHhcC-CCCC---HHHHHHHHhccccCH
Confidence 988874322 1112 466777888887754
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.15 E-value=0.0053 Score=74.30 Aligned_cols=157 Identities=12% Similarity=0.158 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|..|+|||.|++.+++.......-..+++++ ..++..++...+.. ...+ .+++.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~~~----~f~~~y~~- 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GKGD----SFRRRYRE- 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----ccHH----HHHHHhhc-
Confidence 34589999999999999999998532111112234443 33344444444321 1122 23333333
Q ss_pred cEEEEEeCCCCCCh-hhHhh-ccccccc-CCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENY-NDWVD-MSCPFEA-GAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
-=+|||||+..... ..|.. +...+.. ...|..|||||+.. .+...+...-.++|+..+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 24788999965322 22222 2211111 12356688888762 2333344556799999999999999998
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
++...+ ...+ +++..-|++.+.+..
T Consensus 458 ka~~r~-l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQ-LNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcC-CCCC---HHHHHHHHHhccCCH
Confidence 874432 1112 456666666666553
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.011 Score=72.56 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=108.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+..--..... ...+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHH
Confidence 468999999999999995432 345678999999999999999987432111000 0000000000 1111
Q ss_pred HhhcC-----CCCCCCCHHHHHHHH---HH-HhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEcc-chhhh
Q 042986 294 RSITK-----QTIDNSDLNLLQEEL---KK-QLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTR-NREVA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 363 (1485)
..-.. ........+++.+.. .. -..+++-++|+|++..-....++.+...+..-.....+|.+|. ...+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000012233332222 11 1235666899999977665667777666655445566665554 33443
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
..+ .....+++.+++.++..+.+.+.+...+.. . -.+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-Y---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHH
Confidence 322 234568999999999888887765432211 1 1356667888899977443
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0056 Score=73.03 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=84.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
..-+.|+|..|+|||+|++.+.+..... ...+++++ ...+...+...+... .. +.+++.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHccc-
Confidence 4567899999999999999999854321 12234443 233444555554321 11 234444433
Q ss_pred cEEEEEeCCCCCChhhH--hhccccccc-CCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENYNDW--VDMSCPFEA-GAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
.-++++||+.......| +.+...+.. ...|..||+||... .+...+.....+++.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34788899854321111 122221110 01355788888542 1222233446789999999999999988
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCC
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGL 416 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 416 (1485)
++-..+ ..-+ +++..-|+..+.|.
T Consensus 283 k~~~~~-~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCC
Confidence 874332 1112 34455555555543
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0076 Score=68.77 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCC
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDF 396 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 396 (1485)
+++-++|+|+++..+......+...+..-..++.+|++|.+. .+...+ .....+.+.+++.+++.+.+.+.... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 344455679998877667777776665544567777777665 343332 33467999999999999988765311 1
Q ss_pred CCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 397 SSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 397 ~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233556788999999765544
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.011 Score=67.15 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=109.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-------------ccccCeeEEEEEc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-------------QYYFDLKAWTCVS 280 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s 280 (1485)
.+++|.+..++.+...+..+. -....-++|..|+||+++|..+.+..-- ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999995442 2478889999999999999777653211 1111122333211
Q ss_pred CccCHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEE
Q 042986 281 DDFDVIWLTTIILRSIT--KQTIDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKI 353 (1485)
Q Consensus 281 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~i 353 (1485)
...+-..+...-++..+ ......-..+++. .+.+.+ .+++-++|+|++...+......+...+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 0111112233322 233332 3567789999997776666666666664333 3455
Q ss_pred EEEc-cchhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 354 IVTT-RNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 354 ivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
|++| +...+...+ .....+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 5444 444444333 3446899999999999999987642110 011135788999999965544
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0042 Score=71.31 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=93.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 319 (1485)
....+.|||..|.|||-|++++.+. ...+......+.++ .+.....++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 5788999999999999999999994 33444323333332 23334444444432 1123455554
Q ss_pred CcEEEEEeCCCCCCh-hhHh----hcccccccCCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHH
Q 042986 320 KKFLLVLDDVWNENY-NDWV----DMSCPFEAGAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSV 385 (1485)
Q Consensus 320 kr~LivlDdv~~~~~-~~~~----~l~~~l~~~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 385 (1485)
.-=++++||++--.. +.|+ .+...+.. .|-.||+|++.. .+...+...-++++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334888999954211 1222 22222222 344899998652 3344445556899999999999999
Q ss_pred HHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 386 FAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 386 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
+.+++...+-.-++.-..-++..+-+-..-+.-|+..
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~ 289 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNR 289 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 9987654332223333344444444433444444433
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.001 Score=65.77 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
|.|+|+.|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999954
No 161
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.0041 Score=75.48 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
..-+.|+|..|+|||+||+.+.+....+..-..+++++. .++...+...+... ..+ .+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh-c
Confidence 456889999999999999999985432211122344433 23344444444321 122 2333333 2
Q ss_pred cEEEEEeCCCCCChhh-H-hhccccccc-CCCCcEEEEEccchh---------hhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENYND-W-VDMSCPFEA-GAPGSKIIVTTRNRE---------VAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
.-+||+||+......+ + +.+...+.. ...|..||+|+.... +...+.....+++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4489999995432111 1 122221110 123456788776531 223333445799999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
++-..+ ...+ +++..-|++.+.|..-.
T Consensus 292 ~~~~~~-~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 292 KAEEEG-IDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHcC-CCCC---HHHHHHHHcCcCCCHHH
Confidence 875322 1111 46677788888887643
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0087 Score=74.25 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=105.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.++||.+.-++.+..++..+. -...+.++|..|+||||+|+.+.+..--....+ ....+.-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999885432 235667899999999999998876431111000 00000000011110
Q ss_pred Hh-------hcCC-CCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchhhh
Q 042986 294 RS-------ITKQ-TIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNREVA 363 (1485)
Q Consensus 294 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 363 (1485)
.. +.+. .....+..++.+.+... ..+++-++|+|++........+.+...+..-.....+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00111222222222211 124556788999976655556666666654444556554 55445554
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHh
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGG 425 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~ 425 (1485)
..+ .....+++.+++.++....+...+-..+. .. -.+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 433 23457889999999888777664422211 11 1355667888898865 45554433
No 163
>PRK08118 topology modulation protein; Reviewed
Probab=97.01 E-value=0.00037 Score=71.24 Aligned_cols=35 Identities=34% Similarity=0.521 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEE
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAW 276 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 276 (1485)
+.|.|+|++|+||||||+.+++..... .+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999866544 56777776
No 164
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.00 E-value=0.014 Score=75.63 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=39.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+.+++|.++.+++|.+++......+....+++.++|++|+|||++|+.+.+..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999887743211122234588999999999999999999843
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.017 Score=71.22 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=104.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+..--...-+ ..+.+.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 245677899999999999998876321110000 00001111111111
Q ss_pred HhhcCC-----CCCCCCHHHHH---HHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchhhh
Q 042986 294 RSITKQ-----TIDNSDLNLLQ---EELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNREVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 363 (1485)
...... .......+++. +.+... ..+++-++|+|++..-....+..+...+..-.....+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00011222222 222211 235567889999976655566666665544333445444 44444443
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
..+ .....+++.+++.++....+...+-..+- ... .+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 332 23456889999999988888776532221 111 355667888888876433
No 166
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00054 Score=72.01 Aligned_cols=194 Identities=14% Similarity=0.009 Sum_probs=120.2
Q ss_pred cccCCcccccEEEEeccCCcc--hHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCC-cccCCCCcC
Q 042986 1219 VVGNLPQALKFLSIWHCSRLE--SIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENL-VSFPEGGLL 1295 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~~p~~~~~ 1295 (1485)
.++...+.+++|+|.+|.+.. .+...+.++|.|+.|+|+.|.....+-..-..+.+|++|.|.+.... .........
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 344555679999999997664 55677789999999999999876544321135679999999887543 223333556
Q ss_pred ccccceEEEccccCcccc---ccCCCCC-CccCEEEeeCCCCCcc--ccCCCCCCCCcceEEeCCCCCCccccccCcCCc
Q 042986 1296 SAKLKRLVIGGCKKLEAL---PLGMHHL-TCLQHLTIGGVPSLLC--FTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHR 1369 (1485)
Q Consensus 1296 ~~~L~~L~l~~c~~l~~l---~~~~~~l-~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 1369 (1485)
+|.+++|+++.|+ +..+ ....... +.+++|+.-.|+...- .-..+-..+|+..+-+..|+.-+ ......+..
T Consensus 145 lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~ 222 (418)
T KOG2982|consen 145 LPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEP 222 (418)
T ss_pred chhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-hhhcccCCC
Confidence 7788899988853 2221 1112211 3566666665543210 00111124688888888888633 333355777
Q ss_pred cccccceeecccccccccccccccccccCCCCCccceeecccCCCCccccc
Q 042986 1370 LTSLRRLAISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSS 1420 (1485)
Q Consensus 1370 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 1420 (1485)
++++--|+|+.+++....++-. -.-+++|..|.+.+.|-...+..
T Consensus 223 ~p~~~~LnL~~~~idswasvD~------Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDA------LNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCcchhhhhcccccccHHHHHH------HcCCchhheeeccCCcccccccC
Confidence 8888889999988543322210 01245677888888776665544
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0028 Score=80.19 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=84.7
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---c-cCeeEEEEEcCccCHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY---Y-FDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++||+++++++++.|.... ..-+.++|.+|+|||++|+.++....... . .++.+|.. +...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~--- 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS--- 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH---
Confidence 58999999999999996642 12335799999999999999987431111 1 13444421 1111
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCC--------ChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQL-SRKKFLLVLDDVWNE--------NYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
++ .+.... .+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|...+
T Consensus 253 -ll---aG~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 253 -LL---AGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred -Hh---cccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 11 111111 12222222222222 346789999999531 1222222333332222 234555554433
Q ss_pred hhhhc-------CCcCceeCCCCChhhHHHHHHhcc
Q 042986 362 VAAIM-------GTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 362 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
....+ .....+.+++++.++..+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32211 223578999999999999888643
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.95 E-value=0.005 Score=80.50 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=82.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc----cCeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY----FDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 289 (1485)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+......... ....+|.- ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 358999999999999996542 234458999999999999998874321110 12233321 11111
Q ss_pred HHHHHhhcCCCCCCCCHH-HHHHHHHHHhC-CCcEEEEEeCCCCCC-------hhhHhhcccccccCCCCcEEEEEccch
Q 042986 290 TIILRSITKQTIDNSDLN-LLQEELKKQLS-RKKFLLVLDDVWNEN-------YNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 290 ~~il~~l~~~~~~~~~~~-~~~~~l~~~l~-~kr~LivlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
+. +.... .+.+ .+...+.+.-+ +++.+|++|++..-. ..+-..+..+....+ .-++|-+|...
T Consensus 241 ---~a---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 241 ---IA---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred ---hh---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 10 00111 1122 22222322222 468999999995321 011122222222222 23445455444
Q ss_pred hhhhhc-------CCcCceeCCCCChhhHHHHHHhc
Q 042986 361 EVAAIM-------GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 361 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
.....+ .....+.+...+.++...++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 332111 22346788889999988888764
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.89 E-value=0.0037 Score=62.75 Aligned_cols=88 Identities=19% Similarity=0.093 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC-
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK- 320 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k- 320 (1485)
..+.|+|.+|+||||+|+.+........ ..++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5788999999999999999998543222 23455544443222211111 111111111122222222333333333
Q ss_pred cEEEEEeCCCCCC
Q 042986 321 KFLLVLDDVWNEN 333 (1485)
Q Consensus 321 r~LivlDdv~~~~ 333 (1485)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997653
No 170
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.0041 Score=76.49 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
-.+++|.++.++++..|+..... .....+++.++|+.|.||||+++.+....
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999865422 22234689999999999999999999743
No 171
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.86 E-value=0.0065 Score=61.74 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=36.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++||-++.++++.-.-. +++.+-+.|.||+|+||||-+..+.+.
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHH
Confidence 468999999988866653 345678889999999999988777763
No 172
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.80 E-value=0.0031 Score=74.26 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=87.3
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|.|||++|+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el--~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET--SATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--CCCE-----EEEecc----
Confidence 4578999999988887732100 011234567899999999999999999843 3333 222211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hh----hHhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YN----DWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~----~~~~l~~~l~--~~~~g 350 (1485)
.+. .... ......+...+.......+.+|+||+++... .. ....+...+. ....+
T Consensus 252 eL~----~k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1110 0111222333333334568899999974210 00 0111111111 11235
Q ss_pred cEEEEEccchhhhhh-c-C---CcCceeCCCCChhhHHHHHHhccc
Q 042986 351 SKIIVTTRNREVAAI-M-G---TVPAYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 351 s~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
.+||.||...+.... + . -...+++...+.++..++|..++.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 124688999999999999987753
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.77 E-value=0.014 Score=69.93 Aligned_cols=167 Identities=12% Similarity=0.131 Sum_probs=87.9
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc---cCeeEEEEEcCcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY---FDLKAWTCVSDDF 283 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~~s~~~ 283 (1485)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|.|||++|+.+++....... +....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642100 01123456889999999999999999985432211 122334444331
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCC-------hhhH-----hhccccccc--CC
Q 042986 284 DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNEN-------YNDW-----VDMSCPFEA--GA 348 (1485)
Q Consensus 284 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~-------~~~~-----~~l~~~l~~--~~ 348 (1485)
++ +....+. .......+.+..++. -.+++++|++|+++..- ..+. ..+...+.. ..
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1110000 000111122222221 23578999999996420 0111 122222221 11
Q ss_pred CCcEEEEEccchhhhh-hc-C---CcCceeCCCCChhhHHHHHHhcc
Q 042986 349 PGSKIIVTTRNREVAA-IM-G---TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 349 ~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.+..||.||...+... .+ . -...+++...+.++..++|.++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2444555665543321 11 1 12458999999999999999875
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.76 E-value=0.007 Score=70.96 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=95.4
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.+..+++|.+.+...-. .+-...+-+.++|++|.|||++|+.+++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 4688999888888776632100 011345678899999999999999999843 2222 22211 1
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhh----Hhhccccccc--CCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YND----WVDMSCPFEA--GAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~~----~~~l~~~l~~--~~~g 350 (1485)
.+ ..... ......+.+.+.......+.+|++|+++.-. ... +..+...+.. ...+
T Consensus 214 ~l----~~k~~-----ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYL-----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhc-----chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 11111 0111223333444445678999999985310 001 1122222211 1235
Q ss_pred cEEEEEccchhhhhh--cC---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAAI--MG---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
..||.||...+.... .. -...+++...+.++..++|..+.... .....-++. ++++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-NLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-CCCcccCHH----HHHHHcCCCC
Confidence 678888876543221 11 22458888888888888887664322 112222333 4555566553
No 175
>PRK10536 hypothetical protein; Provisional
Probab=96.72 E-value=0.0092 Score=63.86 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=73.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE----EcCc--c---C
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC----VSDD--F---D 284 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~~--~---~ 284 (1485)
..+.+|......+..++... .+|.+.|..|.|||+||.++..+.-..+.|+.++-+. +++. | +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34677888888888888432 4899999999999999988877432233454333321 1111 1 1
Q ss_pred HHH----HHHHHHHhhcCCCCCCCCHHHHHH----H----HHHHhCCCcE---EEEEeCCCCCChhhHhhcccccccCCC
Q 042986 285 VIW----LTTIILRSITKQTIDNSDLNLLQE----E----LKKQLSRKKF---LLVLDDVWNENYNDWVDMSCPFEAGAP 349 (1485)
Q Consensus 285 ~~~----~~~~il~~l~~~~~~~~~~~~~~~----~----l~~~l~~kr~---LivlDdv~~~~~~~~~~l~~~l~~~~~ 349 (1485)
..+ .++-+...+..-. +....+.+.. . =-.+++++.+ +||+|...+....+...+.. ..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCC
Confidence 111 1112222111100 0011111100 0 0135566544 99999997776555444443 3467
Q ss_pred CcEEEEEccch
Q 042986 350 GSKIIVTTRNR 360 (1485)
Q Consensus 350 gs~iivTtr~~ 360 (1485)
+|+||+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999987544
No 176
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.045 Score=70.19 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
+.+.+|.++-+++|++++............++.++|++|+||||+|+.+.... ...| +-+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEEcCCCCCHHHhccch
Confidence 56789999999999998864221122345689999999999999999999732 2223 113333333332221110
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhh----Hhhccccccc---------------CCCCcEE
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYND----WVDMSCPFEA---------------GAPGSKI 353 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~i 353 (1485)
-. ........+.+.+.+.- ...-+++||.++...... ...+...+.. .-.+.-+
T Consensus 396 ~~------~~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RT------YIGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hc------cCCCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 01111122333343322 233478899995533211 1111111110 1123334
Q ss_pred EEEccchhhhhhc-CCcCceeCCCCChhhHHHHHHhcc
Q 042986 354 IVTTRNREVAAIM-GTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 354 ivTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
|.|+....+...+ +...++++.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4455444332222 233567888888888777766654
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.012 Score=76.51 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=37.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999996542 2345589999999999999988743
No 178
>PRK08116 hypothetical protein; Validated
Probab=96.70 E-value=0.0055 Score=67.97 Aligned_cols=104 Identities=25% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
..+.++|..|+|||.||..+++....+ -..+++++ ..+++..+........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 357899999999999999999964322 23345554 3344555544432211 11122 2333344333
Q ss_pred EEEEEeCCCCCChhhHhh--ccccccc-CCCCcEEEEEccch
Q 042986 322 FLLVLDDVWNENYNDWVD--MSCPFEA-GAPGSKIIVTTRNR 360 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 360 (1485)
||||||+..+...+|.. +...+.. ...|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445543 2211111 13456799998653
No 179
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.019 Score=64.80 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCC
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDF 396 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 396 (1485)
+++-++|+|+++..+...-..+...+..-..++.+|++|.. ..+...+ .....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45678999999776655555566555544457777766664 3444333 334678999999999988887541
Q ss_pred CCChhHHHHHHHHHHHcCCChhHHHHHH
Q 042986 397 SSNKSLEEIGRKIVIKCNGLPLAAKTLG 424 (1485)
Q Consensus 397 ~~~~~~~~~~~~i~~~c~g~PLai~~~~ 424 (1485)
.+ +..+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2235678999999998665443
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.028 Score=64.83 Aligned_cols=161 Identities=9% Similarity=0.060 Sum_probs=88.5
Q ss_pred ceee-chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCe--------eEEEEEcCccCH
Q 042986 215 KVYG-RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDL--------KAWTCVSDDFDV 285 (1485)
Q Consensus 215 ~~vG-r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--------~~wv~~s~~~~~ 285 (1485)
.++| .+.-++.+...+..+. -....-++|+.|+||||+|+.+.+..--...... +-++.....+|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 6667777777774432 3466789999999999999888653211110000 000000000111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR- 360 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~- 360 (1485)
..+ .. .......+++.+.+... ..+++=++|+|++...+......+...+..-..++.+|++|.+.
T Consensus 81 ~~i--------~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 81 HLV--------AP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred EEe--------cc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 000 00 00112233333322211 23455678999997666555666766666555677777777553
Q ss_pred hhhhhc-CCcCceeCCCCChhhHHHHHHhc
Q 042986 361 EVAAIM-GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 361 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
.+...+ .....+++.+++.++..+.+.+.
T Consensus 152 ~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 152 QILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 333332 33467999999999998888754
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.64 E-value=0.0022 Score=64.13 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=75.8
Q ss_pred CCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhh-hccccccEeccccccccccccc--cccCcccccee
Q 042986 625 LQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESI-NKLYNLHTFLLEGCWRLKKLCA--DMGNLIKLHHL 701 (1485)
Q Consensus 625 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 701 (1485)
......+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+ ..+++|++|.|.+| .+.++-+ .+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 345678899999988874 5788999999999999999885555 45677999999998 5555432 25678899999
Q ss_pred eccCCCCcccccc----cccCcccccccCce
Q 042986 702 KNSDTDSLEEMPL----GIGKLTCLRTLCNF 728 (1485)
Q Consensus 702 ~l~~~~~l~~~p~----~i~~L~~L~~L~~~ 728 (1485)
.+-+|. ....+. -+.++++|++|+.-
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 998887 444332 26778888888543
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.0033 Score=66.91 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEE
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCV 279 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 279 (1485)
-.++|+|..|.||||++..+... ....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 46789999999999999999874 4567777776654
No 183
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.0003 Score=72.84 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=59.5
Q ss_pred ccCCcccEEEecCCCCCC-----CCCccCCCCcccEEeccCCccc----ccC-------hhhhccccccEeccccccccc
Q 042986 623 FKLQRLRVFSLRGYHNPE-----LPDSIGNLRNLRYLNLSGTNIK----TLP-------ESINKLYNLHTFLLEGCWRLK 686 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~Ls~~~i~----~lP-------~~i~~L~~L~~L~L~~~~~l~ 686 (1485)
..+..+..++||||.|.. +...|.+-.+|+.-+++.-... .+| +.+-++++|++.+||.|..-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 356778888999988753 4455677788888888864211 333 345577899999999885444
Q ss_pred ccccc----ccCccccceeeccCCC
Q 042986 687 KLCAD----MGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 687 ~lp~~----i~~L~~L~~L~l~~~~ 707 (1485)
..|+. |++-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 44443 5677889999998887
No 184
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.046 Score=62.73 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
....-+.+.|++|+|||+||..+..+ ..|..+--++ +-++. + ..+......+...+....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiS---pe~mi----------G--~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIIS---PEDMI----------G--LSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeC---hHHcc----------C--ccHHHHHHHHHHHHHHhhc
Confidence 34556778999999999999999873 3454332221 11100 0 0111223334455666667
Q ss_pred CCcEEEEEeCCCCCChhhHhhccccccc-------------CCCCcE--EEEEccchhhhhhcCC----cCceeCCCCCh
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEA-------------GAPGSK--IIVTTRNREVAAIMGT----VPAYQLKNLSI 379 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~-------------~~~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~~ 379 (1485)
+.--.||+||+..- .+|..+...+.+ -.+|-| |+-||....+...|+- ...|.+..++.
T Consensus 597 S~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 78889999999432 455544332221 123445 4557777788887763 24688998888
Q ss_pred -hhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHc
Q 042986 380 -DDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKC 413 (1485)
Q Consensus 380 -~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c 413 (1485)
++..+.++..- .-.+.+.+.++++.+.+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77777777642 112334566677777766
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.052 Score=61.29 Aligned_cols=176 Identities=11% Similarity=0.086 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------ccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 222 EKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-------YFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
..+++...+..+ .-...+-++|+.|+||+++|+.+....--.. ....+-++..+..+|+..+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 345555555332 2346788999999999999988865221000 0000011111111121100
Q ss_pred hhcCCC-CCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-
Q 042986 295 SITKQT-IDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM- 366 (1485)
Q Consensus 295 ~l~~~~-~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~- 366 (1485)
.... ...-..+++.+ +.+.+ .+++=++|+|++...+......+...+..-.+++.+|++|.+. .+...+
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 01122333332 22222 2445688899998777667777777776555667766666553 444433
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
.....+.+.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~-------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI-------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC-------c-----hHHHHHHHcCCCHHHHHHH
Confidence 3456799999999999998876421 1 1346788999999877544
No 186
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00022 Score=88.99 Aligned_cols=111 Identities=23% Similarity=0.406 Sum_probs=49.6
Q ss_pred cccccEEEecccCcccc--ccccccCCCCcceEeeccC-CCccccC-----CCCCCCCCCEEEEecCCCCCcCccccccC
Q 042986 1061 SCRLERLELRDCQDLVK--LPKSLLSLSSLTEIRIHNC-SSLVSFP-----DAVLPSQLRVISIWDCGALKFLPDAWMLD 1132 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~--l~~~l~~l~~L~~L~L~~~-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1132 (1485)
.+.|+.|.+.+|..... +-.....++.|+.|++++| ......+ ......+|+.|+++.|...+...-.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34555555555544433 2234445555555555542 1111111 01122455555555555433322222223
Q ss_pred CCCCccEEEEecCCCCcccc---CCCCCCCCceEEEecCCCc
Q 042986 1133 NNSSLEILDIRHCHSLTYVA---GVQLPPSLKQLEIYSCDNI 1171 (1485)
Q Consensus 1133 ~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~L 1171 (1485)
.+++|+.|.+.+|..+++.. ....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 35666666666665433221 1223444666666655544
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.52 E-value=0.0015 Score=81.79 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=71.7
Q ss_pred cccccceeeecccccCccccchhccccccc-cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC--hhhhc
Q 042986 594 DIRHLRTFLPIMLSNSSLGYLARSILPKLF-KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP--ESINK 670 (1485)
Q Consensus 594 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP--~~i~~ 670 (1485)
.++.||+|...+.. +..+-+..++ +|++|+.||+|+++++.+ ..+++|++|+.|.+++-.++.-+ ..+..
T Consensus 146 ~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 46777777654322 1112233444 888899999998888888 77888899988888887776433 46778
Q ss_pred cccccEeccccccccccccc-------cccCccccceeeccCCC
Q 042986 671 LYNLHTFLLEGCWRLKKLCA-------DMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 671 L~~L~~L~L~~~~~l~~lp~-------~i~~L~~L~~L~l~~~~ 707 (1485)
|++|++||+|..... ..+. .-..|++||.||.+++.
T Consensus 219 L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 888999988875322 1111 11247888888888776
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.51 E-value=0.02 Score=67.55 Aligned_cols=118 Identities=23% Similarity=0.228 Sum_probs=75.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
++.|.|+-++||||+++.+..... .. .+++..-+.. +..++ .+....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l------------------~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIEL------------------LDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhH------------------HHHHHHHHHhhccCC
Confidence 999999999999999977766321 11 4444433321 11111 111111222212278
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhh-----hc-CCcCceeCCCCChhhHHHHH
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAA-----IM-GTVPAYQLKNLSIDDCLSVF 386 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf 386 (1485)
..|+||.|... .+|......+.+.++. +|++|+-+..... .. |....+++-||+-.|...+-
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 89999999665 7899988888776666 8888887754322 11 33457899999999976643
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.51 E-value=0.042 Score=61.18 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHH
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWL 288 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 288 (1485)
-|.+.|.+|+|||++|+.+.. ..... .++++.....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHH
Confidence 455899999999999999986 22222 244555554444444
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.50 E-value=0.02 Score=58.21 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=74.9
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc------------------cCeeEEEEE
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY------------------FDLKAWTCV 279 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~~ 279 (1485)
|.+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+..--... ..-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777775432 2456789999999999999887763211111 111222221
Q ss_pred cCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEE
Q 042986 280 SDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKII 354 (1485)
Q Consensus 280 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 354 (1485)
.... ..-..+++. .+.+.+ .+++=++|+||++......+..++..+..-..++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 1110 012233333 222222 2456789999998877777888887777667788988
Q ss_pred EEccchh-hhhhc-CCcCceeCCCC
Q 042986 355 VTTRNRE-VAAIM-GTVPAYQLKNL 377 (1485)
Q Consensus 355 vTtr~~~-v~~~~-~~~~~~~l~~L 377 (1485)
++|++.. +...+ .....+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 8887754 33322 23344555554
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=96.48 E-value=0.023 Score=70.76 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=95.8
Q ss_pred CceeechhHHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELL---LKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|.|||++|+.+++... .. ++.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccHH----H
Confidence 46889887666665544 22110 0112345688999999999999999987432 12 2333221 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhH----hhcccccc--cCCCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YNDW----VDMSCPFE--AGAPGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~~~----~~l~~~l~--~~~~gs 351 (1485)
+. .... ......+...+.+.....+++|++||++.-. ...+ ..+...+. ....+-
T Consensus 252 f~----~~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 1100 0112233444555566788999999995321 1111 22222221 123455
Q ss_pred EEEEEccchhhhh-hc-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC
Q 042986 352 KIIVTTRNREVAA-IM-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG 415 (1485)
Q Consensus 352 ~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g 415 (1485)
.||.||...+... .+ . -...+.+...+.++-.++++.++-.. .... ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-KLSP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-ccch----hHHHHHHHhcCCC
Confidence 6777776654322 11 1 22568888888888888888876331 1111 2234567777777
No 192
>PRK07261 topology modulation protein; Provisional
Probab=96.47 E-value=0.006 Score=62.80 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.|.|+|++|+||||||+.+....... -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999998643221 244555552211 11233445555666666666
Q ss_pred EEEEEeCCCC
Q 042986 322 FLLVLDDVWN 331 (1485)
Q Consensus 322 ~LivlDdv~~ 331 (1485)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57787743
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.082 Score=59.91 Aligned_cols=176 Identities=10% Similarity=0.057 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--------ccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY--------YFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
-+.+...+..+ .-....-++|+.|+||+++|+.+....--+. ..+.+-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 44555566332 1245677899999999999988875321110 0000111111222222111
Q ss_pred hhcCCCCCCCCHHHHHH---HHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CC
Q 042986 295 SITKQTIDNSDLNLLQE---ELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GT 368 (1485)
Q Consensus 295 ~l~~~~~~~~~~~~~~~---~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~ 368 (1485)
.......-..+++.+ .+... ..+++=++|+|+++.........+...+..-.++..+|++|.+. .+...+ ..
T Consensus 80 --~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 --EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred --ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 000001122333332 22211 23556688899998777666777777676555667777766654 444333 33
Q ss_pred cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 369 VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 369 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
...+.+.+++.+++.+.+.+.+. .. ...+...++.++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~------~~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS------AE---ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc------cC---hHHHHHHHHHcCCCHHHH
Confidence 46899999999999988887531 11 112456778899999643
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.34 E-value=0.0036 Score=70.60 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=42.6
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+++|.++.++++++++.......+...+++.++|++|.||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976533123456899999999999999999998854
No 195
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.075 Score=55.94 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=102.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEc-CccCHHHHHHHHHHhhcCCCCC--CCCHHHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVS-DDFDVIWLTTIILRSITKQTID--NSDLNLLQEELKKQ 316 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~ 316 (1485)
+..++.|+|.-|.|||.+++........ +.++-|.+. +......+...+...+..+... ....++..+.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 3468999999999999999954432111 112223333 3467778888888888763221 11233344444444
Q ss_pred h-CCCc-EEEEEeCCCCCChhhHhhcccccc--cC-CCCcEEEEEccch--------hhhhhcCCcCc-eeCCCCChhhH
Q 042986 317 L-SRKK-FLLVLDDVWNENYNDWVDMSCPFE--AG-APGSKIIVTTRNR--------EVAAIMGTVPA-YQLKNLSIDDC 382 (1485)
Q Consensus 317 l-~~kr-~LivlDdv~~~~~~~~~~l~~~l~--~~-~~gs~iivTtr~~--------~v~~~~~~~~~-~~l~~L~~~~~ 382 (1485)
. +++| ..++.||..+......+.++.... .. ..--+|+..-..+ .....-..... |++.|+++++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4566 899999987665544444432221 11 1111233333211 11111111223 99999999988
Q ss_pred HHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHh
Q 042986 383 LSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGG 425 (1485)
Q Consensus 383 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 425 (1485)
..++..+..+.... .+---.+....|..+..|.|.+|.-++.
T Consensus 206 ~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88887775443221 1111235566788899999999976653
No 196
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.025 Score=67.86 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=92.6
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
+.+-+|.++-+++|++.|.-......-+-+++..||++|+|||+|++.+++ .....| +-++++.--|..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc--
Confidence 556789999999999999543222333458999999999999999999998 344444 2334444444333210
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------hhHhhcccccccC----------CCCcE-EE
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-------NDWVDMSCPFEAG----------APGSK-II 354 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-------~~~~~l~~~l~~~----------~~gs~-ii 354 (1485)
-...-.++.. ..+.+.+++. +.+.=+++||.++.... ...-+++.|=.+. --=|. +.
T Consensus 395 ---HRRTYIGamP-GrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ---HRRTYIGAMP-GKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ---ccccccccCC-hHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0001112222 2333344433 44567889999854321 0111111111000 01133 34
Q ss_pred EEccc-hh-h-hhhcCCcCceeCCCCChhhHHHHHHhcc
Q 042986 355 VTTRN-RE-V-AAIMGTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 355 vTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
|||-+ -+ + +..+..+.++++.+-+++|=.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44443 22 2 2333556789999999998777777665
No 197
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.32 E-value=0.0004 Score=86.59 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=37.8
Q ss_pred ccCCCCcceEeeccCCCcccc---CCCCCCCCCCEEEEecC-CCCCcCc--cccccCCCCCccEEEEecCCCC
Q 042986 1082 LLSLSSLTEIRIHNCSSLVSF---PDAVLPSQLRVISIWDC-GALKFLP--DAWMLDNNSSLEILDIRHCHSL 1148 (1485)
Q Consensus 1082 l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~-~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l 1148 (1485)
...++.|+.|.+.+|..+... +.....+.|+.|++++| ......+ .......+++|+.|++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 344788888888888766542 22334577777777763 2222211 1112344566666666666543
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.061 Score=64.29 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=68.3
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
-+.+-+|+++-+++|++.+.-...++..+-+++..+|++|||||++|+.++.- ....| +-++|+.-.|+.+|-.-
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 35677899999999999997655445667899999999999999999999973 22233 22455555554433110
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 042986 292 ILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 292 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~ 331 (1485)
. ...-..-...+++.+++. +-..=|+.+|.|+.
T Consensus 484 -----R-RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 -----R-RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred -----c-eeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0 011112223344444433 33456888899854
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.24 E-value=0.039 Score=67.86 Aligned_cols=179 Identities=12% Similarity=0.172 Sum_probs=92.5
Q ss_pred CceeechhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLL---KDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.++.++++.+++. ..+. .+....+-+.++|++|.|||++|+.+.+... .. ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----HH
Confidence 467898877766655443 1100 0122334578999999999999999997432 22 222221 11
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHhh----cccccc--cCCCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSCPFE--AGAPGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~~~~~----l~~~l~--~~~~gs 351 (1485)
+. .... ......+...+.......+.+|++||++.-. ...+.. +...+. ....+-
T Consensus 124 ~~----~~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 1110 0122233444445445667899999994421 011111 111111 112344
Q ss_pred EEEEEccchhh-hhhc----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 352 KIIVTTRNREV-AAIM----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 352 ~iivTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.||.||..... -..+ .-...+.+...+.++-.++|..+.-... ...... ...+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CCcchh----HHHHHHhCCCCC
Confidence 56667765432 1111 1234688888888888888887653211 111112 336777777743
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.22 E-value=0.022 Score=64.65 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCe-eEEEEEcCc-cCHHHHHHHHHHhhcCCCC
Q 042986 224 RDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDL-KAWTCVSDD-FDVIWLTTIILRSITKQTI 301 (1485)
Q Consensus 224 ~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~il~~l~~~~~ 301 (1485)
.++++.+..- +.-+.+.|+|..|+|||||++.+.+..... +-+. ++|+.+.+. .++.++.+.+...+.....
T Consensus 121 ~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 121 MRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred Hhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 4477777543 233567899999999999999988743221 2233 477777765 4678888888887765443
Q ss_pred CCCCHHH-----HHHHHHHHh--CCCcEEEEEeCC
Q 042986 302 DNSDLNL-----LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 302 ~~~~~~~-----~~~~l~~~l--~~kr~LivlDdv 329 (1485)
+...... ....+.+++ ++++++||+|++
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2222111 111122222 578999999999
No 201
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.14 E-value=0.0028 Score=79.39 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=20.3
Q ss_pred cCccccceeeccCCCCcccccccccCcccccccC
Q 042986 693 GNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLC 726 (1485)
Q Consensus 693 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 726 (1485)
.++++|+.||+++++ +..+ .||++|++||+|.
T Consensus 170 ~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hccCccceeecCCCC-ccCc-HHHhccccHHHHh
Confidence 455666666666666 4444 5677777777773
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.08 E-value=0.015 Score=75.45 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.+....- +.....+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhhh-----
Confidence 4689999999999999854211 0223345788999999999999988876321 11111122222221111
Q ss_pred HHHHhhcCCCC---CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCC-----------CCcEEEEE
Q 042986 291 IILRSITKQTI---DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGA-----------PGSKIIVT 356 (1485)
Q Consensus 291 ~il~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 356 (1485)
.-...+.+... +......+.+.+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 01112222111 11122234444443 456799999997776666666655444331 34556666
Q ss_pred ccc
Q 042986 357 TRN 359 (1485)
Q Consensus 357 tr~ 359 (1485)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 203
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.04 E-value=0.026 Score=74.00 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=75.9
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+...+...... ......++.++|+.|+|||++|+.+..... ..-...+.++++.-.+... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~-~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHS-V- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccch-H-
Confidence 45899999999999998653210 112245778999999999999999997321 1112223344443222111 1
Q ss_pred HHHHhhcCCCC---CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC-----------CCCcEEEEE
Q 042986 291 IILRSITKQTI---DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG-----------APGSKIIVT 356 (1485)
Q Consensus 291 ~il~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 356 (1485)
..+.+... +......+...+++ ....+|+||++...+...+..+...+..+ ...+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11111111 11122233333332 23458999999887777777666655432 123447777
Q ss_pred ccc
Q 042986 357 TRN 359 (1485)
Q Consensus 357 tr~ 359 (1485)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 754
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.01 E-value=0.024 Score=73.04 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=68.5
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||++|+.+.... +...+.+++++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 4578999999999888864211 011234567899999999999999998733 22234555544222111
Q ss_pred HHHHhhcCCC--CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccc
Q 042986 291 IILRSITKQT--IDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFE 345 (1485)
Q Consensus 291 ~il~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~ 345 (1485)
+...++... .+......+.+.+++ ...-+++||+++..+...+..+...+.
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 111111111 111222333333331 334699999998877666666655553
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.03 Score=64.13 Aligned_cols=178 Identities=13% Similarity=0.023 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---c-----cccCeeEEEEEcCccCHHHHHHHHH
Q 042986 222 EKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---Q-----YYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-----~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.-+++...+..+ .-...+-+.|+.|+||+++|..+....-- . +....+-++..+..+|+..+.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---- 80 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT---- 80 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe----
Confidence 345666666433 23467789999999999999887653210 0 011111111122222221110
Q ss_pred HhhcCCCC-CCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhhhhc-
Q 042986 294 RSITKQTI-DNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVAAIM- 366 (1485)
Q Consensus 294 ~~l~~~~~-~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~- 366 (1485)
.... ..-..+++.+..+.. ..+++=++|+|+++..+......+...+..-..++.+|.+|.+ ..+...+
T Consensus 81 ----p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 81 ----PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ----cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 112233333322211 2356778999999777666666676666554556776666665 4454443
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.....+.+.+++.+++.+.+.+.. + .+ .+.+..++..++|.|..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 344678999999999988886542 1 11 2336678999999996443
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.99 E-value=0.021 Score=59.57 Aligned_cols=131 Identities=20% Similarity=0.172 Sum_probs=63.4
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEc----Cc--cCHHHH---
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVS----DD--FDVIWL--- 288 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~--~~~~~~--- 288 (1485)
.+..+-...++.|.. ..++.+.|++|.|||.||.+..-+.-..+.|+.++++.-. +. |-+-++
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344555666677753 2589999999999999998777655445778877776421 11 101110
Q ss_pred ----HHHHHHhhcCCCCCCCCHHHHHHHH------HHHhCCC---cEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE
Q 042986 289 ----TTIILRSITKQTIDNSDLNLLQEEL------KKQLSRK---KFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV 355 (1485)
Q Consensus 289 ----~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~k---r~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 355 (1485)
..-+...+..- ......+.+.+.= ..+++++ ..+||+|++.+....++..+... .+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 11111111110 0112222222110 1234443 57999999988776777766544 367999999
Q ss_pred Eccch
Q 042986 356 TTRNR 360 (1485)
Q Consensus 356 Ttr~~ 360 (1485)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87544
No 207
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.99 E-value=0.003 Score=39.24 Aligned_cols=21 Identities=48% Similarity=0.939 Sum_probs=12.9
Q ss_pred cccEEeccCCcccccChhhhc
Q 042986 650 NLRYLNLSGTNIKTLPESINK 670 (1485)
Q Consensus 650 ~Lr~L~Ls~~~i~~lP~~i~~ 670 (1485)
+|++|||++|+|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.92 E-value=0.029 Score=73.15 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=66.6
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+.+..- ..-...+.+.++.-.+ .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-h----
Confidence 4588999999999888864311 0112235788999999999999999986321 1111223344433111 1
Q ss_pred HHHHhhcCCCCC---CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccc
Q 042986 291 IILRSITKQTID---NSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFE 345 (1485)
Q Consensus 291 ~il~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~ 345 (1485)
.....+.+.... ......+...++ ....-+|+|||+...+...+..+...+.
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 112222222211 111222322222 1223699999997776666666655443
No 209
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.92 E-value=0.018 Score=65.00 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=68.7
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhc
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSIT 297 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 297 (1485)
+|....+...+++.... .+...+-+.++|..|+|||.||.++++... +..+ .+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 45445555555554321 112346788999999999999999998643 2222 34555443 34444444432
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhh--ccccc-ccC-CCCcEEEEEccc
Q 042986 298 KQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVD--MSCPF-EAG-APGSKIIVTTRN 359 (1485)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 359 (1485)
. .+. .+.+.. ++ +-=||||||+..+...+|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~-----~~~---~~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSV---KEKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcH---HHHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 112 222332 22 34589999997776677764 43333 211 235568888854
No 210
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.90 E-value=0.0062 Score=62.87 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.-+.++|..|+|||.||..+.+..-. ..+ .+.|+.+ .+++..+ .... .....+.. +.+. .+ -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~------~~L~~~l----~~~~-~~~~~~~~---~~~l-~~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA------SDLLDEL----KQSR-SDGSYEEL---LKRL-KR-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHH----HCCH-CCTTHCHH---HHHH-HT-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec------Cceeccc----cccc-cccchhhh---cCcc-cc-c
Confidence 56889999999999999999875322 222 3455543 3333333 2221 11222222 2222 22 2
Q ss_pred EEEEEeCCCCCChhhHhh--ccccccc-CCCCcEEEEEccch
Q 042986 322 FLLVLDDVWNENYNDWVD--MSCPFEA-GAPGSKIIVTTRNR 360 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 360 (1485)
=|+||||+-.+...+|.. +...+.. ..++ .+||||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 477899997665445542 1111111 1123 578888653
No 211
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.90 E-value=0.024 Score=61.02 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
+.-+++.|+|.+|+|||++|.++.... ......++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 356899999999999999999887632 23346789998876 66655544
No 212
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.023 Score=70.42 Aligned_cols=119 Identities=13% Similarity=0.228 Sum_probs=72.4
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc---CeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF---DLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 287 (1485)
..++|.+..++.+.+.+...... ......+...+|+.|||||-||+.+... -| +..+-+++|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 46899999999999998654321 2233556777999999999999888762 23 2233343443211
Q ss_pred HHHHHHHhhcCCCCC---CCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHhhccccccc
Q 042986 288 LTTIILRSITKQTID---NSDLNLLQEELKKQLSRKKF-LLVLDDVWNENYNDWVDMSCPFEA 346 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~-LivlDdv~~~~~~~~~~l~~~l~~ 346 (1485)
+--+..+.+..++ -.+..+ |-+..+.++| +|.||.|...+.+..+-+...+.+
T Consensus 563 --kHsVSrLIGaPPGYVGyeeGG~----LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHHHHhCCCCCCceeccccc----hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1112233333221 223333 4445556777 888999988777666666665554
No 213
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.14 Score=56.54 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=103.2
Q ss_pred ceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
++=|-++.+++|.+.+.-.-. -+-..++=|-++|++|.|||-||++|++ +....| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 456788888888887742211 0224567788999999999999999999 444444 333332
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC--------------hhhHhhcccccccC--CCC
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQL-SRKKFLLVLDDVWNEN--------------YNDWVDMSCPFEAG--APG 350 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~~--------------~~~~~~l~~~l~~~--~~g 350 (1485)
++++...+. ...+.+.+-+.- ...+.+|.+|.++.-. +...-+++..+..+ ...
T Consensus 220 ---ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122221111 112222222222 2458999999884311 11222333333221 235
Q ss_pred cEEEEEccchhhhhhc--C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh----hHHH
Q 042986 351 SKIIVTTRNREVAAIM--G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP----LAAK 421 (1485)
Q Consensus 351 s~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P----Lai~ 421 (1485)
-|||..|...++.... . -.+.+++..-+.+.-.++|+-|+-.. +....-+++. +++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e~----la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLEL----LARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHHH----HHHhcCCCchHHHHHHH
Confidence 5889888776654332 2 23567877555555567788776332 2223334444 555666654 4555
Q ss_pred HHHhHhh
Q 042986 422 TLGGLLR 428 (1485)
Q Consensus 422 ~~~~~l~ 428 (1485)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 5566654
No 214
>PRK06921 hypothetical protein; Provisional
Probab=95.84 E-value=0.022 Score=63.13 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEE
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCV 279 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 279 (1485)
...+.++|..|+|||.||.++.+....+. -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 46788999999999999999998542221 234556654
No 215
>PRK08181 transposase; Validated
Probab=95.83 E-value=0.014 Score=64.36 Aligned_cols=101 Identities=19% Similarity=0.060 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.-+.++|..|+|||.||..+.+... .....+.|+. ..++...+..... ..+.+.. +... . +-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---l~~l-~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR-----ELQLESA---IAKL-D-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh-----CCcHHHH---HHHH-h-cC
Confidence 3588999999999999999987432 1222345553 3344444433211 1122222 2222 2 23
Q ss_pred EEEEEeCCCCCChhhHh-h-cccccccCCCCcEEEEEccch
Q 042986 322 FLLVLDDVWNENYNDWV-D-MSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~-~-l~~~l~~~~~gs~iivTtr~~ 360 (1485)
=|||+||+......+|. . +...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999554332322 1 222221111123588888764
No 216
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.78 E-value=0.064 Score=58.36 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=87.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc-ccccccCeeEEEEEcCccC-----HHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-QVQYYFDLKAWTCVSDDFD-----VIWL 288 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~-----~~~~ 288 (1485)
.++|-.++...+-.|+..... .+...-|.|+|+.|.|||+|...+..+. ++.++| .-|....... +..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478988888888888754321 1233456789999999999988777762 233333 3444444332 2333
Q ss_pred HHHHHHhhcCCCCC----CCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHhhcccccc-----cCCCCcEEEEEc
Q 042986 289 TTIILRSITKQTID----NSDLNLLQEELKKQL--SRKKFLLVLDDVWNENYNDWVDMSCPFE-----AGAPGSKIIVTT 357 (1485)
Q Consensus 289 ~~~il~~l~~~~~~----~~~~~~~~~~l~~~l--~~kr~LivlDdv~~~~~~~~~~l~~~l~-----~~~~gs~iivTt 357 (1485)
.+++..++...... ..+...+...+...- .+-+++.|+|..+-.-...-..+...+- ...|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44443333322211 122333333333211 1236888888775432111111111111 234567788899
Q ss_pred cchhh---hhhc----CCcCceeCCCCChhhHHHHHHhc
Q 042986 358 RNREV---AAIM----GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 358 r~~~v---~~~~----~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
|-... .+.+ .-..++-+..++-++..++++.-
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 86432 1222 11224445566666666666554
No 217
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0052 Score=64.53 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=57.5
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCC--ccc-ccChhhhccccccEecccccccccccccc---ccCccc
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGT--NIK-TLPESINKLYNLHTFLLEGCWRLKKLCAD---MGNLIK 697 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~--~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~ 697 (1485)
.+..|..|++.+..++.+ ..+..|++|++|+++.| .+. .++-...++++|++|++++| .++. +.. +.++.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcc
Confidence 344455555555444443 23445667777777777 443 44444455577777777776 3332 222 345566
Q ss_pred cceeeccCCCCcccccc----cccCcccccccCceEecc
Q 042986 698 LHHLKNSDTDSLEEMPL----GIGKLTCLRTLCNFAVGK 732 (1485)
Q Consensus 698 L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 732 (1485)
|..|++.+|. ...+-. .+.-|++|..|+.+.+..
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence 6667776665 222211 145567788887666543
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.18 Score=57.67 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCC
Q 042986 319 RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDF 396 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 396 (1485)
+++-++|+|+++..+...+..+...+..-.+++.+|.+|.+ ..+...+ .....+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 45568889999888777788887777655567766655554 4444333 3346899999999999998877521
Q ss_pred CCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 397 SSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 397 ~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
++ ...++..++|.|..+..+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755443
No 219
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.76 E-value=0.031 Score=68.75 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=35.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|.+..++.+...+... ...-|.|+|..|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999988776432 2345578999999999999999863
No 220
>PRK06526 transposase; Provisional
Probab=95.76 E-value=0.012 Score=64.63 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.-+.++|++|+|||+||..+....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 457899999999999999998743
No 221
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.75 E-value=0.033 Score=56.87 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=32.4
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 216 VYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 216 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+||....+.++++.+..-. ....+ |.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~~p-VlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSDLP-VLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TSTS--EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh---CCCCC-EEEEcCCCCcHHHHHHHHHHh
Confidence 4688888888888775542 22344 459999999999999999984
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.75 E-value=0.038 Score=60.28 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=35.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 289 (1485)
..-.++.|+|.+|+|||++|.++..... ..-..++|++.. .++..++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHH
Confidence 3467999999999999999998886432 234568899877 56655543
No 223
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.73 E-value=0.04 Score=56.96 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=68.2
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
-..++|.|..++.+++-...-. .+....-|-+||.-|+||++|++++.+.. ....-. -|.|.+. ++
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glr--LVEV~k~-dl------- 124 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEY--ADEGLR--LVEVDKE-DL------- 124 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHH--HhcCCe--EEEEcHH-HH-------
Confidence 4568999999888876543221 12233456799999999999999999843 222211 2333321 11
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhcccccccC---CCCcEEEEEccc
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE-NYNDWVDMSCPFEAG---APGSKIIVTTRN 359 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTtr~ 359 (1485)
.+...+.+.|+. ..+||+|..||..-+ +...+..+...+..+ .+...++..|.+
T Consensus 125 -----------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 -----------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111222222222 357999999999443 334566666665432 334455555544
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.69 E-value=0.037 Score=72.34 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=73.7
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+.+..- +.-...+-+.+++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccHHH
Confidence 5689999999999888853211 0112234567899999999999998886321 1111223333433222111111
Q ss_pred HHHHhhcCCC--CCCCCHHHHHHHHHHHhCCCc-EEEEEeCCCCCChhhHhhcccccccC-----------CCCcEEEEE
Q 042986 291 IILRSITKQT--IDNSDLNLLQEELKKQLSRKK-FLLVLDDVWNENYNDWVDMSCPFEAG-----------APGSKIIVT 356 (1485)
Q Consensus 291 ~il~~l~~~~--~~~~~~~~~~~~l~~~l~~kr-~LivlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 356 (1485)
+ ++... .+......+. +.++.++ -+++||++...+...+..+...+..+ ...+-||+|
T Consensus 587 -l---~g~~~gyvg~~~~~~l~----~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 -L---IGSPPGYVGYNEGGQLT----EAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred -h---cCCCCcccCcCccchHH----HHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1 11111 1112222333 3333444 58999999887766666666555432 134456666
Q ss_pred ccc
Q 042986 357 TRN 359 (1485)
Q Consensus 357 tr~ 359 (1485)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 225
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.67 E-value=0.056 Score=59.08 Aligned_cols=91 Identities=16% Similarity=0.054 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHHHHHHHhhcCCC---------CCCCC
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLTTIILRSITKQT---------IDNSD 305 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~~ 305 (1485)
..-.++.|+|.+|.|||++|.++........ .=..++|+.....++..++.+. .+...... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~-~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQL-AVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHH-HHHhccchhhhhccEEEEeCCC
Confidence 3457999999999999999998875321111 0145789988887777655433 33321110 11234
Q ss_pred HHHHHHHHHHHhC----CCcEEEEEeCCC
Q 042986 306 LNLLQEELKKQLS----RKKFLLVLDDVW 330 (1485)
Q Consensus 306 ~~~~~~~l~~~l~----~kr~LivlDdv~ 330 (1485)
.+++...+.+... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555555554432 344588888873
No 226
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.0014 Score=68.40 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=21.1
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCccccc
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTL 664 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l 664 (1485)
+++.|+||.|+-|.|+.+ +.+..+++|+.|.|+.|.|..+
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccH
Confidence 555555555555555555 2344555555555555555444
No 227
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.61 E-value=0.0087 Score=57.86 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 228
>PRK06696 uridine kinase; Validated
Probab=95.60 E-value=0.015 Score=63.08 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=36.2
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.|.+-+++|.+.+... ..+...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3667778888888654 33467899999999999999999999743
No 229
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.011 Score=62.16 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCCCC---CCCCH-HHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQTI---DNSDL-NLLQEELKK 315 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~---~~~~~-~~~~~~l~~ 315 (1485)
++|+.+||+.|+||||.+.+++.....+ -..+..++... .....+-++...+.++.... ...+. +.+.+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999987777644333 33455666432 23455566677777765422 12222 223333443
Q ss_pred HhCCCcEEEEEeCC
Q 042986 316 QLSRKKFLLVLDDV 329 (1485)
Q Consensus 316 ~l~~kr~LivlDdv 329 (1485)
.-.++.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32223346677765
No 230
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.55 E-value=0.29 Score=57.09 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc
Q 042986 220 ETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ 268 (1485)
Q Consensus 220 ~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 268 (1485)
+.-.+.+.+.+... ......+|+|.|.=|+||||+.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34456677777554 22467899999999999999999998755433
No 231
>PRK04296 thymidine kinase; Provisional
Probab=95.54 E-value=0.023 Score=59.73 Aligned_cols=113 Identities=12% Similarity=-0.040 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCC--CCCHHHHHHHHHHHhCC
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTID--NSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 319 (1485)
.++.|+|..|.||||+|..+..... .+-..++.+. ..++.......++++++..... ....+++.+.+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999988887432 2222233331 1222222233445555422111 2334455555555 333
Q ss_pred CcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 320 KKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 320 kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
+.-+||+|.+.--..++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432222222232222 245788999998854
No 232
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.53 E-value=0.021 Score=59.48 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=27.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEE
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWT 277 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 277 (1485)
...+|.++|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEE
Confidence 45699999999999999999999843 3344444444
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.085 Score=60.10 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=47.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQL 317 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 317 (1485)
..++|+++|.+|+||||++..+......+ .+ .+..+.. +++. ..+-++...+.++.......+.+.+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998643211 12 2334433 2332 222233333333322222345555655554432
Q ss_pred CC-CcEEEEEeCCCC
Q 042986 318 SR-KKFLLVLDDVWN 331 (1485)
Q Consensus 318 ~~-kr~LivlDdv~~ 331 (1485)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677787633
No 234
>PRK12377 putative replication protein; Provisional
Probab=95.45 E-value=0.029 Score=60.98 Aligned_cols=80 Identities=20% Similarity=0.082 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
..+.++|..|+|||.||.++.+.... ....++++++. +++..+-..... ...... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 57889999999999999999985432 22334555443 334443333211 111111 22222 345
Q ss_pred EEEEEeCCCCCChhhHh
Q 042986 322 FLLVLDDVWNENYNDWV 338 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~ 338 (1485)
=||||||+.......|.
T Consensus 165 dLLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 165 DLLVLDEIGIQRETKNE 181 (248)
T ss_pred CEEEEcCCCCCCCCHHH
Confidence 69999999554434454
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=95.42 E-value=0.024 Score=62.61 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+.|+|..|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999764
No 236
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.42 E-value=0.057 Score=58.96 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccc-CeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH--
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF-DLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL-- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 308 (1485)
+-+.++|+|..|+||||||+.+++.. +.+| +.++++-+++.. .+.++.+++.+.-..+ ..+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i--~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH--HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34678999999999999999999843 3344 456677777764 3455555554421110 111111111
Q ss_pred ---HHHHHHHHh---CCCcEEEEEeCC
Q 042986 309 ---LQEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 309 ---~~~~l~~~l---~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112234444 388999999998
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.41 E-value=0.65 Score=56.11 Aligned_cols=205 Identities=16% Similarity=0.137 Sum_probs=114.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---ccc---ccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQY---YFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~~s~~~~~~~ 287 (1485)
..+-+|+.+..+|-..+...-. .++..+.+-|.|.+|.|||..+..|.+... .++ .|+ .+.|+.-.=..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3456899999999888854322 123445899999999999999999998442 122 332 23344334456888
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCC---CCChhhHhhcccccccCCCCcEEEEEcc-
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLS-----RKKFLLVLDDVW---NENYNDWVDMSCPFEAGAPGSKIIVTTR- 358 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LivlDdv~---~~~~~~~~~l~~~l~~~~~gs~iivTtr- 358 (1485)
+...|.+++.+... ......+.+..++. .+..++++|+++ ...++....+.. + ...++||++|.+=
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-W-pt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-W-PTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-C-CcCCCCceEEEEec
Confidence 88999999876543 22333344444443 457888899873 332222222211 1 2456888766542
Q ss_pred -chhhhhhc-C-------CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhH
Q 042986 359 -NREVAAIM-G-------TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGL 426 (1485)
Q Consensus 359 -~~~v~~~~-~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 426 (1485)
..+....+ . ....+...+-++++-.++...+..+... -.+...+=+|++|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 22222111 0 1123555666666666666655443321 123334445555555555555555544433
No 238
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.37 E-value=0.55 Score=54.13 Aligned_cols=213 Identities=15% Similarity=0.152 Sum_probs=119.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCeeEEEEEcCc---------------
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFDLKAWTCVSDD--------------- 282 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~--------------- 282 (1485)
|.+..++|..||.+. .-..|.|.|+-|.||+.|+ .++..+.+..-..||.--+.....
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 667889999999665 3379999999999999999 777765432222222222221110
Q ss_pred -c----CHHHHHHHHHHhhcCCCCC--CCCHHHHHHHH-------HH-------------------HhC---CCcEEEEE
Q 042986 283 -F----DVIWLTTIILRSITKQTID--NSDLNLLQEEL-------KK-------------------QLS---RKKFLLVL 326 (1485)
Q Consensus 283 -~----~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l-------~~-------------------~l~---~kr~Livl 326 (1485)
| ++..+..-.+..+.++..+ .....++.+.+ ++ +|. .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 1122222222222332221 12222222222 11 111 13568999
Q ss_pred eCCCCCC---------hhhHhhcccccccCCCCcEEEEEccchhhhhhcC------CcCceeCCCCChhhHHHHHHhccc
Q 042986 327 DDVWNEN---------YNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMG------TVPAYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 327 Ddv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~------~~~~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
|+.-... ..+|.... . ..+-..||++|-+....+... ..+.+.|...+.+.|.++...+.-
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L---v-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL---V-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH---H-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9984421 12344321 1 234568999888765544332 235688999999999999988864
Q ss_pred CCCCC------------CCC----hhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCCh-hHHHHHhh
Q 042986 392 GTRDF------------SSN----KSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQ-CEWEGVLS 441 (1485)
Q Consensus 392 ~~~~~------------~~~----~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~-~~w~~~l~ 441 (1485)
..... ... ....+-....++..||=-.-+..+++.++...++ +.-+++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32110 000 1233444557788899888899988888876553 34444444
No 239
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.068 Score=62.42 Aligned_cols=145 Identities=11% Similarity=0.063 Sum_probs=80.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCeeE
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-------------------YFDLKA 275 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 275 (1485)
.++|-+....++..+..... .....+-++|+.|+||||+|..+.+..--.. ..+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36778888888888886432 1223588999999999999988887432111 012223
Q ss_pred EEEEcCccC---HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcE
Q 042986 276 WTCVSDDFD---VIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSK 352 (1485)
Q Consensus 276 wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ 352 (1485)
.+..+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+.......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333322 12222222222211110 35678999999977654444445554545566778
Q ss_pred EEEEccch-hhhhhcC-CcCceeCCCCCh
Q 042986 353 IIVTTRNR-EVAAIMG-TVPAYQLKNLSI 379 (1485)
Q Consensus 353 iivTtr~~-~v~~~~~-~~~~~~l~~L~~ 379 (1485)
+|++|... .+...+. ....+++.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 88888743 3332221 234566666333
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.33 E-value=0.069 Score=58.79 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..-.++.|+|.+|+|||++|.+++-...... ....++|++..+.++..++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 3468999999999999999999874322222 135789999888777655443
No 241
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.33 E-value=0.031 Score=56.22 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=46.5
Q ss_pred ccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCcccccccee
Q 042986 1298 KLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 1377 (1485)
+...+|+++|. +..++ .+..++.|.+|.+++|.....-|.-..+.++|+.|.+.+|.+.. +.+...+..||.|++|.
T Consensus 43 ~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCccceee
Confidence 44555565533 33332 44456666666666654444334334455677777777776543 11112366777888888
Q ss_pred ecccc
Q 042986 1378 ISGCD 1382 (1485)
Q Consensus 1378 l~~n~ 1382 (1485)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 88876
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.31 Score=57.43 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=64.8
Q ss_pred CceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.++=|.++.+.++.+++..-.. .+-...+=|.++|++|.|||.||+++.+...+ .| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch-----
Confidence 4577899888888887754210 01223456789999999999999999995443 22 333332
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~ 331 (1485)
+|+..+ ...+.+.+.+.+.+.-..-++++++|+++-
T Consensus 258 ---eivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 234455566666777778899999999954
No 243
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.31 E-value=0.054 Score=60.84 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQ 316 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 316 (1485)
..+++.++|++|+||||++..+......+ +.+ .+..|+.. ++. ..+.+....+.++.......+...+.+.+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 45799999999999999998888644322 222 34444432 222 22223333333332222234445555555443
Q ss_pred hCCCcEEEEEeCC
Q 042986 317 LSRKKFLLVLDDV 329 (1485)
Q Consensus 317 l~~kr~LivlDdv 329 (1485)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 244
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.29 E-value=0.16 Score=65.82 Aligned_cols=179 Identities=14% Similarity=0.120 Sum_probs=93.9
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.+..++.+.+.+.-.-. .+-...+-+.++|++|.|||++|+.+.+.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 4578888888887776632100 011234457889999999999999999843 2232 222211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------h----hhHhhccccccc--CCCCcE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN--------Y----NDWVDMSCPFEA--GAPGSK 352 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs~ 352 (1485)
+++... -......+...+...-+..+.+|++|+++.-. . ....++...+.. ...+-.
T Consensus 522 ----~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111 11122233334444445668999999984310 0 001112222221 123445
Q ss_pred EEEEccchhhhhh-c----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 353 IIVTTRNREVAAI-M----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 353 iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
||.||...+.... + .-...+.+...+.++-.++|..+.-+. ......++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 6667766543321 1 123568888888888888887654221 11222233 34566677654
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.27 E-value=0.067 Score=58.01 Aligned_cols=44 Identities=18% Similarity=0.036 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD 284 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 284 (1485)
..-.++.|.|.+|+||||+|.++..... ..-..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 3568999999999999999999886432 2233567887655554
No 246
>PHA00729 NTP-binding motif containing protein
Probab=95.26 E-value=0.038 Score=58.35 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999874
No 247
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.22 E-value=0.014 Score=69.18 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=40.1
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
+++|.++.+++|++.|.......+..-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433221233557999999999999999999997
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.11 E-value=0.0097 Score=59.20 Aligned_cols=84 Identities=23% Similarity=0.092 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEE
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFL 323 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 323 (1485)
|.++|..|+|||+||+.+++.. .. ...-+.++...+..++....--. .... ......+.+.++ +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec-cccc--cccccccccccc-----ceeE
Confidence 5689999999999999999843 11 22335677766766554322111 0000 000000000111 7899
Q ss_pred EEEeCCCCCChhhHhhc
Q 042986 324 LVLDDVWNENYNDWVDM 340 (1485)
Q Consensus 324 ivlDdv~~~~~~~~~~l 340 (1485)
+|||++.......+..+
T Consensus 69 l~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEESSCGG--HHHHHTT
T ss_pred EEECCcccCCHHHHHHH
Confidence 99999976544434443
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.033 Score=63.60 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=43.1
Q ss_pred CcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhc-CCcCceeCCCCChhhHHHHHHhc
Q 042986 320 KKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIM-GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 320 kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
++-++|+|++..-+...-..+...+.....+..+|++|.+. .+...+ .....+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34455668886665444445544443333456677777664 344332 23467899999999998888664
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=95.08 E-value=0.36 Score=61.64 Aligned_cols=152 Identities=11% Similarity=0.014 Sum_probs=90.8
Q ss_pred CCCCcHHHHHHHHhccccccccc-CeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEe
Q 042986 249 MGGLGKTTLAQLVYNDKQVQYYF-DLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLD 327 (1485)
Q Consensus 249 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlD 327 (1485)
+-++||||+|..++++.-. ..+ ...+-++.++..... ..+++++.+.....- -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 6789999999999985311 112 124556666544443 334444333211100 01245799999
Q ss_pred CCCCCChhhHhhcccccccCCCCcEEEEEccc-hhhhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHH
Q 042986 328 DVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-REVAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEI 405 (1485)
Q Consensus 328 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 405 (1485)
+++.........+...+..-....++|.+|.+ ..+...+ .....+++.+++.++....+...+...+ ...+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HHH
Confidence 99887766666666666543446666665554 3343332 2346899999999998887776543221 1111 356
Q ss_pred HHHHHHHcCCChhHH
Q 042986 406 GRKIVIKCNGLPLAA 420 (1485)
Q Consensus 406 ~~~i~~~c~g~PLai 420 (1485)
...|++.++|.+-.+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 778999999988433
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.01 E-value=0.077 Score=67.48 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=66.4
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.++.++.+.+.+..... ........+.++|+.|+|||++|+.+.... ... .+.+++++-.+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~---~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIE---LLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CCC---cEEeechhhccccc---
Confidence 3579999999999988863211 011234578899999999999999998743 222 23444443211111
Q ss_pred HHHHhhcCCCC---CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhccccc
Q 042986 291 IILRSITKQTI---DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPF 344 (1485)
Q Consensus 291 ~il~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l 344 (1485)
...+.+... +......+.+.++ +...-+|+||++...+...+..+...+
T Consensus 530 --~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred --HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 122222111 1111122323322 233569999999877666666665544
No 252
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.98 E-value=0.12 Score=62.27 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred CceeechhHHHHHHHHHhc---CCC-CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLK---DDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 289 (1485)
.++.|.+..++.+.+.... ... -+-...+-|.++|++|.|||.+|+.+.+... ..| +-+.++. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------h-
Confidence 3577877766666543211 000 0123456688999999999999999998432 222 1111111 1
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------h-h----HhhcccccccCCCCcEEEEEc
Q 042986 290 TIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-------N-D----WVDMSCPFEAGAPGSKIIVTT 357 (1485)
Q Consensus 290 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-------~-~----~~~l~~~l~~~~~gs~iivTt 357 (1485)
.... ...+...+.+.+...-...+++|++|+++..-. . . ...+...+.....+--||.||
T Consensus 296 ---~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---cccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1000 011122233333333345789999999953100 0 0 001111122222333455677
Q ss_pred cchh-hhhhc----CCcCceeCCCCChhhHHHHHHhcccC
Q 042986 358 RNRE-VAAIM----GTVPAYQLKNLSIDDCLSVFAQHSLG 392 (1485)
Q Consensus 358 r~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~ 392 (1485)
.... +...+ .-...+.+...+.++-.++|..+..+
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 6543 22222 12346888888888888888887643
No 253
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.36 Score=59.71 Aligned_cols=183 Identities=12% Similarity=0.145 Sum_probs=102.2
Q ss_pred CceeechhHHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELL---LKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.++.|-++.+++|.+.. ..++. -+..-++=+-++|++|.|||-||++++....+ -+++++.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 46789887666665554 32210 02233566789999999999999999985543 23445542
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC---------------hhhHhhcccccccCCCCc-
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN---------------YNDWVDMSCPFEAGAPGS- 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~---------------~~~~~~l~~~l~~~~~gs- 351 (1485)
+.++.+.+.. +.. ..+.+...=...+.+|.+|+++... .....++..-......+.
T Consensus 379 ---EFvE~~~g~~--asr---vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--ASR---VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--hHH---HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2233332221 111 1112222223457888888874321 012233322222222222
Q ss_pred -EEEEEccchhhhhhc--C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 352 -KIIVTTRNREVAAIM--G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 352 -~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
-++-+|+..++.... . -++.+.+..-+...-.++|..|+-... ...+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 334466665554322 1 235688888888999999999874322 2234567777 888898888554
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.91 E-value=0.13 Score=66.66 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=91.3
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.++++.+++...-. -+-...+-|.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE-----EEEecH----
Confidence 3588999999998887632100 011234568899999999999999999843 2222 222211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhcccccccC-CCCcEEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSCPFEAG-APGSKII 354 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~ii 354 (1485)
++ .... .....+.+...+.........+|++|+++.... .....+...+... ..+..++
T Consensus 247 ~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11 1100 011122333344444456678999999843210 0011122222111 2233444
Q ss_pred E-Eccchh-hhhhcC----CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 355 V-TTRNRE-VAAIMG----TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 355 v-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
| ||.... +...+. -...+.+...+.++-.+++..+.-+. ..... .....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCC
Confidence 4 454332 222211 12357778788888788877543211 11111 12455777787764
No 255
>PHA02244 ATPase-like protein
Probab=94.89 E-value=0.14 Score=58.08 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|.++|..|+|||++|+.+...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999984
No 256
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.057 Score=56.19 Aligned_cols=78 Identities=24% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI--TKQTIDNSDLNLLQEELKKQ 316 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l--~~~~~~~~~~~~~~~~l~~~ 316 (1485)
.++.+|+|.|.+|.||||+|+.++.... ..+ ++-++- +.|-...-.....+.. .-....+.+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~--~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG--VEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC--cCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999998432 221 111111 1111111011111111 11223456788888899998
Q ss_pred hCCCc
Q 042986 317 LSRKK 321 (1485)
Q Consensus 317 l~~kr 321 (1485)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 257
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.83 E-value=0.19 Score=52.51 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=84.8
Q ss_pred CceeechhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRD---IVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++||.++.+.+ |++.|...+.=++-.++-|..+|++|.|||.+|+++.+..++ .| +.|-. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech-------HH
Confidence 468998877654 444553322113445778889999999999999999995443 22 11111 11
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-hhH-----------hhcccccc--cCCCCcEEEEE
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-NDW-----------VDMSCPFE--AGAPGSKIIVT 356 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-~~~-----------~~l~~~l~--~~~~gs~iivT 356 (1485)
-|-+.++ +...++.+...+.-+.-++++.+|.++.-.. ..+ ..++.-+. ..+.|-.-|-.
T Consensus 187 liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1222221 1111122222233344689999998843211 011 11111111 12446666666
Q ss_pred ccchhhhhhc-C--CcCceeCCCCChhhHHHHHHhcc
Q 042986 357 TRNREVAAIM-G--TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 357 tr~~~v~~~~-~--~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
|....+.... . -...++..--+++|-.+++..++
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 7666554332 1 12356777778888888888876
No 258
>PRK13695 putative NTPase; Provisional
Probab=94.83 E-value=0.014 Score=60.69 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988753
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.12 Score=61.51 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=105.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
+++||.+.-+..|...+..+. -..--...|.-|+||||+|+.+..-.--. -| ...++...-...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhh
Confidence 357999999999999996542 12333467999999999999888632111 11 1111122112222222
Q ss_pred HhhcCC-----CCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchhhh
Q 042986 294 RSITKQ-----TIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNREVA 363 (1485)
Q Consensus 294 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 363 (1485)
..-..+ ......+++..+.+.+. ..+|-=+.|+|.|.-.....|..++.-+..-.+.-..|. ||-...+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 220000 00112233333222222 234555888999977666778888776654444555444 55445554
Q ss_pred hhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 364 AIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 364 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
..+ .....|.++.++.++....+..-+-...-..+ .+...-|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCCh
Confidence 443 34578999999999888888776643322111 344555666666643
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.75 E-value=0.15 Score=55.47 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.++|.+|+|||+||..+.+....++ ..+++++ ..++...+-.... . ...+.+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~-~--~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFS-N--SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHh-h--ccccHHH----HHHHhc-c
Confidence 34788999999999999999998543222 2344453 3344444333321 1 1112222 233344 3
Q ss_pred cEEEEEeCCCCCChhhHhh-cccccccC--CCCcEEEEEccc
Q 042986 321 KFLLVLDDVWNENYNDWVD-MSCPFEAG--APGSKIIVTTRN 359 (1485)
Q Consensus 321 r~LivlDdv~~~~~~~~~~-l~~~l~~~--~~gs~iivTtr~ 359 (1485)
.=+||+||+......+|.. +...+.+. ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665556653 22212111 123357777754
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.74 E-value=0.17 Score=50.35 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.+++|+|..|.|||||++.+...... ....+|+.-.. .+.--. .-...+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999874321 12333331100 000000 01111222233556666677
Q ss_pred EEEEEeCCCCC-ChhhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 322 FLLVLDDVWNE-NYNDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 322 ~LivlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
-++++|+--.. +......+...+... +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 88999987432 222223333333222 246788887765543
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.74 E-value=0.18 Score=52.59 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE---EcCccCHHHHHH------HHHHhhcCCC-----CCCCCH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC---VSDDFDVIWLTT------IILRSITKQT-----IDNSDL 306 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~il~~l~~~~-----~~~~~~ 306 (1485)
-.+++|+|..|.|||||++.++.... .....+++. +. ..+.....+ ++++.++... ...-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 36899999999999999999997432 223333332 11 112222111 1333333221 111222
Q ss_pred H-HHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhcccccccC-CC-CcEEEEEccchhhh
Q 042986 307 N-LLQEELKKQLSRKKFLLVLDDVWNE-NYNDWVDMSCPFEAG-AP-GSKIIVTTRNREVA 363 (1485)
Q Consensus 307 ~-~~~~~l~~~l~~kr~LivlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 363 (1485)
. ...-.+.+.+-..+-++++|+--.. +......+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 2223456667778889999987432 112222333333221 22 66788888876654
No 263
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.72 E-value=0.018 Score=57.02 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=60.1
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCeeEEEEEcCccCHHHHHHHHHHh
Q 042986 217 YGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QYYFDLKAWTCVSDDFDVIWLTTIILRS 295 (1485)
Q Consensus 217 vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~il~~ 295 (1485)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|..+- ...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh--------------
Confidence 566667777777664421 12245679999999999999999975332 22222110 000
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC-CCCcEEEEEccch
Q 042986 296 ITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG-APGSKIIVTTRNR 360 (1485)
Q Consensus 296 l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 360 (1485)
.+ .+.+.+ .+.--++++|+..-.......+...+... ....|+|.||+..
T Consensus 60 --------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 14446779999776555555555555432 5677999998764
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.027 Score=54.45 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQ 268 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 268 (1485)
--|+|.||+|+||||+++.+.+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468899999999999999999865444
No 265
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.56 E-value=0.11 Score=54.90 Aligned_cols=205 Identities=14% Similarity=0.160 Sum_probs=105.9
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc----ccccccCeeEEEEEcCc---------
Q 042986 216 VYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK----QVQYYFDLKAWTCVSDD--------- 282 (1485)
Q Consensus 216 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~--------- 282 (1485)
+.++++....+..... .++.+-+-++|+.|.||-|.+..+.+.. -.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666665553 2346788899999999999875555432 11122344555544332
Q ss_pred -c-----------CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHhhcccccccCCC
Q 042986 283 -F-----------DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKF-LLVLDDVWNENYNDWVDMSCPFEAGAP 349 (1485)
Q Consensus 283 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LivlDdv~~~~~~~~~~l~~~l~~~~~ 349 (1485)
+ .-+.+.+++++++.....- +.-..+.| ++|+-.+++-..+.-..+.+-...-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 1122334444443221110 00112333 445555543322222333333333345
Q ss_pred CcEEEEEccch-h-hhhhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh-hHHHHHHhH
Q 042986 350 GSKIIVTTRNR-E-VAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP-LAAKTLGGL 426 (1485)
Q Consensus 350 gs~iivTtr~~-~-v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~ 426 (1485)
.+|+|+.-.+. . ++..-...-.+++...+++|....+++-+-..+- .-+ .+++.+|+++++|.- -|+-++-..
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67776643321 1 1211122235889999999999998887643321 122 688999999999864 444444322
Q ss_pred -hhcCC--------ChhHHHHHhhc
Q 042986 427 -LRGKY--------SQCEWEGVLSS 442 (1485)
Q Consensus 427 -l~~~~--------~~~~w~~~l~~ 442 (1485)
+.+.+ ..-+|+..+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHH
Confidence 21111 14578777654
No 266
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.13 Score=56.39 Aligned_cols=88 Identities=23% Similarity=0.133 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHh-hcC----CCCCCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRS-ITK----QTIDNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~-l~~----~~~~~~~~~~~~~~l 313 (1485)
+.-+++=|+|+.|.||||+|-+++-. .+..-..++|++.-+.+++.++.. +... +.. +.....+..++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46689999999999999999887763 344445789999999999887644 3333 221 111222233344444
Q ss_pred HHHhCCCcEEEEEeCC
Q 042986 314 KKQLSRKKFLLVLDDV 329 (1485)
Q Consensus 314 ~~~l~~kr~LivlDdv 329 (1485)
.+....+--|+|+|-|
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444445678889988
No 267
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.53 E-value=0.15 Score=52.45 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE------EcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC------VSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKK 315 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 315 (1485)
.+++|+|..|.|||||++.+..-... ....+++. +.+... -...+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 59999999999999999999874321 12222221 111111 1111222234556
Q ss_pred HhCCCcEEEEEeCCCCCC-hhhHhhcccccccC-CC-CcEEEEEccchhhhh
Q 042986 316 QLSRKKFLLVLDDVWNEN-YNDWVDMSCPFEAG-AP-GSKIIVTTRNREVAA 364 (1485)
Q Consensus 316 ~l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 364 (1485)
.+..++-++++|+--..- ......+...+... .. +..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666777899999874321 11222222222211 12 356777777765544
No 268
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.014 Score=36.29 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.9
Q ss_pred cccEEEecCCCCCCCCCccCCC
Q 042986 627 RLRVFSLRGYHNPELPDSIGNL 648 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~~lp~~i~~L 648 (1485)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 269
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.50 E-value=0.13 Score=58.27 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc----cccCeeEEEEEcCccCHHHHHHHHHHhhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----YYFDLKAWTCVSDDFDVIWLTTIILRSIT 297 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 297 (1485)
..-+++-|+|.+|+|||+|+.+++-..... ..=..++|++..+.|+++++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 356899999999999999998766322211 1124689999999999888754 455543
No 270
>PRK08233 hypothetical protein; Provisional
Probab=94.50 E-value=0.1 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3799999999999999999998743
No 271
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.49 E-value=0.12 Score=55.75 Aligned_cols=75 Identities=17% Similarity=-0.016 Sum_probs=39.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhc-CCCCCCCCHHHHHHHHHHHhC
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSIT-KQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
+|+|.|..|+||||+|+.+.........=..+..++...-+......... ..+. ....+..+.+.+.+.+...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~-~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIER-GLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHh-hhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 58999999999999999998743210000123444444333222222221 1111 112345566677666666554
No 272
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.48 E-value=0.1 Score=57.50 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=67.7
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc-cccccccCeeE----EEEEcCccC--------
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND-KQVQYYFDLKA----WTCVSDDFD-------- 284 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~~s~~~~-------- 284 (1485)
+|..+-.--+++|+.+ .+..|.+.|.+|.|||-||-+..=. ...++.|..++ -|.+++...
T Consensus 228 prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 3555555566777544 5789999999999999887443211 11233343222 233443211
Q ss_pred -HHHHHHHHH---HhhcCCCCCCCCHHHHHHHHH---------HHhCCC---cEEEEEeCCCCCChhhHhhcccccccCC
Q 042986 285 -VIWLTTIIL---RSITKQTIDNSDLNLLQEELK---------KQLSRK---KFLLVLDDVWNENYNDWVDMSCPFEAGA 348 (1485)
Q Consensus 285 -~~~~~~~il---~~l~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LivlDdv~~~~~~~~~~l~~~l~~~~ 348 (1485)
+.--.+.|. +.+...... ..+.+...+. .+.+++ +-+||+|...+-...+...+ +...+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G 376 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAG 376 (436)
T ss_pred hccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhcc
Confidence 111122222 222211111 1122222211 123343 56899999977655444444 44568
Q ss_pred CCcEEEEEccch
Q 042986 349 PGSKIIVTTRNR 360 (1485)
Q Consensus 349 ~gs~iivTtr~~ 360 (1485)
+||||+.|---.
T Consensus 377 ~GsKIVl~gd~a 388 (436)
T COG1875 377 EGSKIVLTGDPA 388 (436)
T ss_pred CCCEEEEcCCHH
Confidence 899999987443
No 273
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.15 Score=60.64 Aligned_cols=88 Identities=18% Similarity=0.047 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQL 317 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 317 (1485)
...+|+|+|.+|+||||++..+......+.....+..++. +.+. ..+.++...+.++.......+...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt-DtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT-DTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec-ccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 3579999999999999999888763322211223344433 2222 22222222233322222233444555555443
Q ss_pred CCCcEEEEEeCCC
Q 042986 318 SRKKFLLVLDDVW 330 (1485)
Q Consensus 318 ~~kr~LivlDdv~ 330 (1485)
.+ .=+|++|..-
T Consensus 427 ~~-~DLVLIDTaG 438 (559)
T PRK12727 427 RD-YKLVLIDTAG 438 (559)
T ss_pred cc-CCEEEecCCC
Confidence 33 4578888874
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.46 E-value=0.18 Score=59.48 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998877764
No 275
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.43 E-value=0.0029 Score=64.28 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=74.7
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccce
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 700 (1485)
++..++...+||++.|.+..+-..|+.++.|..||++.|.|..+|+.++.+..+..+++..| .....|.+++.++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 34467888999999998888888888899999999999999999999999999999988877 78889999999999999
Q ss_pred eeccCCC
Q 042986 701 LKNSDTD 707 (1485)
Q Consensus 701 L~l~~~~ 707 (1485)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 9888776
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=94.43 E-value=0.17 Score=59.78 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
....+|.++|.+|+||||.|..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998777765
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.05 Score=57.66 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.+|.|+|+.|.||||+++.+.... ..+....++. +.++... .... ...+..+.....+.....+.++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t-~e~~~E~--~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILT-IEDPIEF--VHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEE-EcCCccc--cccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 378899999999999999877632 2222333332 2222111 0000 00000010011122345566777777777
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
=.|++|.+.+. +.+...... ...|..++.|+....+..
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 79999999654 333332222 234666777776655443
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.11 Score=59.77 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc--CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF--DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
-.++.++|+.|+||||++.++......+.....+..++ .+.+ ...+-++...+.++.......+..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 36899999999999999999987432121112344444 3333 33444555555555433333333344444433 44
Q ss_pred CCcEEEEEeCCCC
Q 042986 319 RKKFLLVLDDVWN 331 (1485)
Q Consensus 319 ~kr~LivlDdv~~ 331 (1485)
++ =+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566898743
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.39 E-value=0.13 Score=51.34 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC---ccCHHHHHHHHHHhh-----cCCC-CCCCCHHH----
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD---DFDVIWLTTIILRSI-----TKQT-IDNSDLNL---- 308 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~il~~l-----~~~~-~~~~~~~~---- 308 (1485)
..|-|++..|.||||+|....-.. ..+=..+.+|..-. ......+++.+ ..+ +... ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 367788888999999997666522 12211233332222 22333333332 111 0000 00011111
Q ss_pred ---HHHHHHHHhCC-CcEEEEEeCCCCC---ChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 309 ---LQEELKKQLSR-KKFLLVLDDVWNE---NYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 309 ---~~~~l~~~l~~-kr~LivlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
..+..++.+.. +-=|+|||++-.. ...+.+++...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223344443 4459999998332 22334455555555566778999999854
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.083 Score=58.05 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
..-+.++|.+|+|||.||.++.+..- +..+ .+.+++ ..++++++...... .....++.+.++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~~- 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELKK- 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhhc-
Confidence 45678999999999999999999654 3323 344443 33455555544432 1122233332222
Q ss_pred cEEEEEeCCCCCChhhHh
Q 042986 321 KFLLVLDDVWNENYNDWV 338 (1485)
Q Consensus 321 r~LivlDdv~~~~~~~~~ 338 (1485)
-=|+||||+-.+....|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 238899999665444443
No 281
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.35 E-value=0.098 Score=62.86 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=52.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQL- 317 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l- 317 (1485)
+.-+++-++|++|+||||||.-+++... | .++-|++|+.-....+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 4568999999999999999999997432 2 3567788887666666555555543222 12
Q ss_pred -CCCcEEEEEeCCCCCC
Q 042986 318 -SRKKFLLVLDDVWNEN 333 (1485)
Q Consensus 318 -~~kr~LivlDdv~~~~ 333 (1485)
.+++.-+|+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 2567889999997654
No 282
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.33 E-value=0.15 Score=54.05 Aligned_cols=80 Identities=25% Similarity=0.206 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccC---eeEEEEEcCccCHHHHHHHHHHhh----cCCCCCCCCHHHHHHHHHH
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFD---LKAWTCVSDDFDVIWLTTIILRSI----TKQTIDNSDLNLLQEELKK 315 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~~ 315 (1485)
||+|.|.+|+||||+|+.+....... ... ....+.. ..+.........-... ........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEee-cccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999998744321 111 1222222 2222221111111111 1112245678888888887
Q ss_pred HhCCCcEEE
Q 042986 316 QLSRKKFLL 324 (1485)
Q Consensus 316 ~l~~kr~Li 324 (1485)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767766544
No 283
>PRK05439 pantothenate kinase; Provisional
Probab=94.33 E-value=0.19 Score=56.31 Aligned_cols=83 Identities=17% Similarity=-0.029 Sum_probs=44.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhc-CCCCCCCCHHHHHHHHHHH
Q 042986 238 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSIT-KQTIDNSDLNLLQEELKKQ 316 (1485)
Q Consensus 238 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~ 316 (1485)
.....+|+|.|.+|+||||+|+.+..-......-..+.-++...=+.....+..- ..+. ...++.-+.+.+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 3467899999999999999999887632111011223334443322222222110 0111 1223455677777777766
Q ss_pred hCCCc
Q 042986 317 LSRKK 321 (1485)
Q Consensus 317 l~~kr 321 (1485)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66654
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.33 E-value=0.11 Score=58.57 Aligned_cols=85 Identities=20% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 313 (1485)
+.-+++-|+|.+|+||||||.++.... ...-..++|+...+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999998877632 2333567888887776653 233333221 1234455555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 042986 314 KKQLS-RKKFLLVLDDVW 330 (1485)
Q Consensus 314 ~~~l~-~kr~LivlDdv~ 330 (1485)
....+ +..-+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 356789999983
No 285
>PTZ00301 uridine kinase; Provisional
Probab=94.29 E-value=0.08 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988763
No 286
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.26 E-value=0.17 Score=51.91 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD 284 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 284 (1485)
++.|+|.+|+||||+|+.+..... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 367999999999999999987432 2334577777665543
No 287
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.0065 Score=63.60 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=81.5
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccc--cccCcccccee
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCA--DMGNLIKLHHL 701 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 701 (1485)
.+.+.+.|++-|+.+..+ .-+.+|+.|++|.||-|+|+.| +.+..+++|+.|.|+.| .+..+.+ -+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 456678888999998887 3346899999999999999999 55889999999999998 5555543 25789999999
Q ss_pred eccCCCCccccccc-----ccCcccccccCceEec
Q 042986 702 KNSDTDSLEEMPLG-----IGKLTCLRTLCNFAVG 731 (1485)
Q Consensus 702 ~l~~~~~l~~~p~~-----i~~L~~L~~L~~~~~~ 731 (1485)
.|..|.-...-+.. +.-|++|+.|++..+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 99887633333322 6678999999876654
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.21 E-value=0.18 Score=55.32 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=53.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC------------------
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT------------------ 300 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------------------ 300 (1485)
+.-+++.|+|.+|+|||++|.++.... .+ .=..++|++..+++ .++.+.+ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356799999999999999999985432 11 23467888887643 3444432 2221100
Q ss_pred --CCCCCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 042986 301 --IDNSDLNLLQEELKKQLSR-KKFLLVLDDVW 330 (1485)
Q Consensus 301 --~~~~~~~~~~~~l~~~l~~-kr~LivlDdv~ 330 (1485)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 45589999874
No 289
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.20 E-value=0.26 Score=48.06 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=45.2
Q ss_pred hcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCccccceEEEccccCcccccc-CCCCCC
Q 042986 1244 RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLSAKLKRLVIGGCKKLEALPL-GMHHLT 1321 (1485)
Q Consensus 1244 ~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~ 1321 (1485)
.|.++++|+.+.+.. .....-...|.++++|+.+.+.++ +..++.. +..+++|+.+.+.+ .+..++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence 355566666666653 222222345666666777776653 4444433 44455667777654 2333322 444566
Q ss_pred ccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccc
Q 042986 1322 CLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSL 1373 (1485)
Q Consensus 1322 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 1373 (1485)
+|+.+.+... +..++.....-.+|+.+.+.+ .+..++. ..|.++++|
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~~l~~i~~~~--~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNCNLKEINIPS--NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT-T--EEE-TT--B-SS-----GGG-----
T ss_pred cccccccCcc--ccEEchhhhcCCCceEEEECC--CccEECC-ccccccccC
Confidence 6776666442 333333332223555555543 2222222 345555554
No 290
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.15 Score=63.51 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=34.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
..++||++|++++++.|..... ++ + ..+|.+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NN-P--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NN-P--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CC-C--eEecCCCCCHHHHHHHHHH
Confidence 3479999999999999976532 22 2 3679999999999866665
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.14 E-value=0.19 Score=51.69 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc---ccccc---cC--eeEEEEEcCccCHHHHHHHHHHhhcCCCC------CCCCH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK---QVQYY---FD--LKAWTCVSDDFDVIWLTTIILRSITKQTI------DNSDL 306 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~~ 306 (1485)
-.+++|+|+.|.|||||.+.+..+. ++... |. .+.|+ .+ .+.++.+.-... ..-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986421 11111 10 12222 22 344555543211 11222
Q ss_pred HH-HHHHHHHHhCCC--cEEEEEeCCCCC-ChhhHhhccccccc-CCCCcEEEEEccchhhhh
Q 042986 307 NL-LQEELKKQLSRK--KFLLVLDDVWNE-NYNDWVDMSCPFEA-GAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 307 ~~-~~~~l~~~l~~k--r~LivlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 364 (1485)
.+ ..-.+.+.+..+ .=++++|+--.. +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 223345556666 678888987332 11222223222221 124677888888876654
No 292
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.14 E-value=0.12 Score=51.68 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999986
No 293
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.25 Score=59.10 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred CceeechhHHHHHHHHHhcCC---C---C-CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDD---L---R-NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~---~---~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++=|.++-+++|.+.+.-.- . + +-...+-|-.+|++|.|||++|+.+.+. .+..| +.+..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 345567766666655442110 0 0 2245677889999999999999999994 34444 222221
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhcccccccCCCCcEEEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSCPFEAGAPGSKIIV 355 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~~l~~~~~gs~iiv 355 (1485)
++.... -..+...+.+.+++.=+--..+|.||.++.... ....+++.-+........|+|
T Consensus 503 ----EL~sk~-----vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ----ELFSKY-----VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ----HHHHHh-----cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 011110 112223333344444344567888887743210 011122222211122223333
Q ss_pred --Ec-cchhhhhhc-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHH
Q 042986 356 --TT-RNREVAAIM-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGR 407 (1485)
Q Consensus 356 --Tt-r~~~v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 407 (1485)
.| |...+-..+ . ....+.+..-+.+.-.++|+.++-+.. ..+.-+++++++
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp-~~~~vdl~~La~ 631 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP-FSEDVDLEELAQ 631 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC-CCccccHHHHHH
Confidence 33 333332222 2 234566766666777889999874432 222234455444
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.14 E-value=0.085 Score=59.43 Aligned_cols=84 Identities=20% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 313 (1485)
+.-+++-|+|++|+||||||.+++... +..-..++|++..+.++... +++++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~~-----a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPVY-----AKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHHH-----HHHcCCCHHHheecCCCCHHHHHHHH
Confidence 456789999999999999998877632 23345678998888777542 33333211 1233455665555
Q ss_pred HHHhC-CCcEEEEEeCC
Q 042986 314 KKQLS-RKKFLLVLDDV 329 (1485)
Q Consensus 314 ~~~l~-~kr~LivlDdv 329 (1485)
...++ +.--+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55554 34668999987
No 295
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.12 E-value=0.12 Score=59.83 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...++.++|.+|+||||+|..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998863
No 296
>PRK03839 putative kinase; Provisional
Probab=94.10 E-value=0.082 Score=55.26 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999843
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.07 E-value=0.22 Score=51.92 Aligned_cols=117 Identities=17% Similarity=0.023 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhc--CCC------------CCCCCHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSIT--KQT------------IDNSDLN 307 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~--~~~------------~~~~~~~ 307 (1485)
.+++|+|..|.|||||++.+..-... -...+++.-. +.......+-..+. .+. ...-+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 58999999999999999999974321 1122222110 11111001111110 000 1111112
Q ss_pred H-HHHHHHHHhCCCcEEEEEeCCCCCC-hhhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 308 L-LQEELKKQLSRKKFLLVLDDVWNEN-YNDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 308 ~-~~~~l~~~l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
+ ..-.+.+.+-.++=++++|+....- ....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2 2233556667778889999885431 1112222222222123677888888876654
No 298
>PRK09354 recA recombinase A; Provisional
Probab=94.05 E-value=0.19 Score=57.21 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 313 (1485)
+.-+++-|+|+.|+||||||.++.... +..-..++|+...+.++.. .+++++... ....+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999998877632 3334568899988887763 233333221 1233455655555
Q ss_pred HHHhCC-CcEEEEEeCCC
Q 042986 314 KKQLSR-KKFLLVLDDVW 330 (1485)
Q Consensus 314 ~~~l~~-kr~LivlDdv~ 330 (1485)
...++. +--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 555543 46689999983
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.03 E-value=0.31 Score=57.96 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH--HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV--IWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
.+++.++|++|+||||++..+.........-..+..|+... +.. .+-++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 46999999999999999887765332011122345555422 221 1122222333332222233445555555543 3
Q ss_pred CCcEEEEEeCC
Q 042986 319 RKKFLLVLDDV 329 (1485)
Q Consensus 319 ~kr~LivlDdv 329 (1485)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3467888966
No 300
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.03 E-value=0.21 Score=55.58 Aligned_cols=81 Identities=16% Similarity=-0.004 Sum_probs=42.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh-cCCCCCCCCHHHHHHHHHHHh
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI-TKQTIDNSDLNLLQEELKKQL 317 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~l~~~l 317 (1485)
....+|+|.|..|+||||+|+.+..-......-..+..++...-+......... ..+ .....+..+.+.+.+.+.+.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHHHH
Confidence 456899999999999999998775422100000123344433322222222211 000 111234566777777666665
Q ss_pred CCC
Q 042986 318 SRK 320 (1485)
Q Consensus 318 ~~k 320 (1485)
.++
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 544
No 301
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.98 E-value=0.12 Score=56.94 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=39.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc----cccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----YYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
.-.+.=|+|.+|+|||.|+.+++-..... +.=..++|++-...|...++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 44688999999999999998776433222 122468999999999988875 455543
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.97 E-value=0.15 Score=53.69 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ 268 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 268 (1485)
.+...|.++||+|.||||..|.++.+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 356678899999999999999999865433
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.97 E-value=0.21 Score=51.12 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC--ccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD--DFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 319 (1485)
.+++|+|..|.|||||.+.+..... .....+++.-.. ..+..+..+ ..+.... .-...+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhc
Confidence 5899999999999999999997432 223344432111 111111111 1111000 111222223345566777
Q ss_pred CcEEEEEeCCCCC-ChhhHhhccccccc-CCCCcEEEEEccchhhhh
Q 042986 320 KKFLLVLDDVWNE-NYNDWVDMSCPFEA-GAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 320 kr~LivlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 364 (1485)
++-++++|+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7888999987432 11222233332321 123667888888765433
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.91 E-value=0.25 Score=58.52 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
....+|.++|.+|+||||.|..++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999998887443
No 305
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.88 E-value=0.19 Score=57.90 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccc----cCeeEEEEEcCccCHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY----FDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
....++-|+|.+|+|||++|.+++........ =..++||+..+.|++.++.+.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 35678999999999999999888754322111 147899999998888776544
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.88 E-value=0.04 Score=58.22 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-h---
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQ-L--- 317 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l--- 317 (1485)
++..|.|.+|.||||+++.+.......+ ..+.+......-...+ .+..+.. .............. .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L----~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKEL----REKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHH----HHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHH----HHhhCcc---hhhHHHHHhcCCccccccc
Confidence 5788899999999999999887443322 2333333222222222 2222111 11111100000000 0
Q ss_pred --CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 318 --SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 318 --~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
..++-+||+|++...+...+..+...... .|+|+|+.-=..+
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999987766667666655443 4788887764433
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.86 E-value=0.37 Score=49.47 Aligned_cols=117 Identities=12% Similarity=-0.015 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc-cc--ccCe---eEEEEEcCccCH--HHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQV-QY--YFDL---KAWTCVSDDFDV--IWLTTIILRSITKQTIDNSDLNLLQEE 312 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~---~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 312 (1485)
-.+++|+|..|.|||||++.+...... .+ .++. +.+ +.+.... ..+...+.-. ....-...+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 358999999999999999999975321 11 1111 122 2332211 1222222110 11111222233334
Q ss_pred HHHHhCCCcEEEEEeCCCCC-ChhhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 313 LKKQLSRKKFLLVLDDVWNE-NYNDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 313 l~~~l~~kr~LivlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
+.+.+..++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55666677788889986332 111222222222222 356888887766543
No 308
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.51 Score=55.75 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
..=|.+||++|.|||-||++|+|. .+..| ++|-.+ +++.. .+ ..+...+.+.+++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNk---YV------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNK---YV------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHH---Hh------hhHHHHHHHHHHHhhcCC
Confidence 456779999999999999999994 34444 444332 11111 11 122334445555565678
Q ss_pred cEEEEEeCCCCCC-----------hhhHhhcccccc--cCCCCcEEEEEccchhhhhhc--CC---cCceeCCCCChhhH
Q 042986 321 KFLLVLDDVWNEN-----------YNDWVDMSCPFE--AGAPGSKIIVTTRNREVAAIM--GT---VPAYQLKNLSIDDC 382 (1485)
Q Consensus 321 r~LivlDdv~~~~-----------~~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~--~~---~~~~~l~~L~~~~~ 382 (1485)
+++|.||.++.-- .....+++.-+. ....|--||-.|..+++-... .. ....-+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999995411 011222222222 123466677777776654322 22 24567777888888
Q ss_pred HHHHHhcccCCCC-CCCChhHHHHHHHHHHHcCCCh
Q 042986 383 LSVFAQHSLGTRD-FSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 383 ~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.++++...-.... ...+-++++||+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888887643221 2334467777764 4566654
No 309
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.83 E-value=0.27 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
....+++|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998743
No 310
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.77 E-value=0.98 Score=50.86 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++=..+....+..++... +.|.|.|..|+||||+|+.+...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH
Confidence 3444445556677777432 35889999999999999999873
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.75 E-value=0.16 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
++.++|++|+||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999988743
No 312
>PRK07667 uridine kinase; Provisional
Probab=93.72 E-value=0.081 Score=55.84 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+.|.+.+... .+...+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666443 2345899999999999999999998743
No 313
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.65 E-value=1.4 Score=49.51 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=87.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc--------ccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK--------QVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEE 312 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 312 (1485)
..+.-++|..|.||+++|..+.+.. ....|-+...++...+ .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 4566799999999999998887642 1111211222222101 11122333322
Q ss_pred HHHH-----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEcc-chhhhhh-cCCcCceeCCCCChhhHHHH
Q 042986 313 LKKQ-----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTR-NREVAAI-MGTVPAYQLKNLSIDDCLSV 385 (1485)
Q Consensus 313 l~~~-----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~l 385 (1485)
+... -.+++=++|+|++..........+...+..-.+++.+|++|. ...+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2221 114677888899866655556667666665556777776554 4444433 23456899999999999887
Q ss_pred HHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 386 FAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 386 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
+.... .+ ++.+..++...+|.=-|+..+
T Consensus 158 l~~~~-------~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN-------KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC-------CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 76541 11 234556666677633455543
No 314
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.35 Score=56.02 Aligned_cols=55 Identities=31% Similarity=0.349 Sum_probs=38.2
Q ss_pred Cceeechh---HHHHHHHHHhcCCC--C-CCCCcEEEEEEcCCCCcHHHHHHHHhcccccc
Q 042986 214 AKVYGRET---EKRDIVELLLKDDL--R-NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ 268 (1485)
Q Consensus 214 ~~~vGr~~---~~~~l~~~l~~~~~--~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 268 (1485)
.++-|-|+ |+++|++.|..... + ++.=++=|.++|++|.|||-||++|.....+-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 34567664 56677777754321 0 22235668899999999999999999866553
No 315
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.53 E-value=0.23 Score=52.66 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-cCHHHHHHHHHHhhcCC-------CCCCCCHH------
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-FDVIWLTTIILRSITKQ-------TIDNSDLN------ 307 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~------ 307 (1485)
+.++|.|..|+|||+|++++.+... -+..+++.+++. .++.++.+++...-..+ ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999998542 234478888765 34556665554431111 11111111
Q ss_pred ---HHHHHHHHHhCCCcEEEEEeCC
Q 042986 308 ---LLQEELKKQLSRKKFLLVLDDV 329 (1485)
Q Consensus 308 ---~~~~~l~~~l~~kr~LivlDdv 329 (1485)
...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 689999999999
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.28 Score=50.70 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=58.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC--ccCHHHHHHHHHHhhcCCC--CCC------CCHHH-H
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD--DFDVIWLTTIILRSITKQT--IDN------SDLNL-L 309 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~--~~~------~~~~~-~ 309 (1485)
-.+++|+|..|.|||||.+.++.-.. .....+++.-.. ....... +..+..+.... ... -+..+ .
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 36899999999999999999997432 122233321100 0011111 11000000000 000 11111 1
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCC-hhhHhhcccccccCCCCcEEEEEccchhhhhh
Q 042986 310 QEELKKQLSRKKFLLVLDDVWNEN-YNDWVDMSCPFEAGAPGSKIIVTTRNREVAAI 365 (1485)
Q Consensus 310 ~~~l~~~l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 365 (1485)
.-.+.+.+..++-++++|+-...- ......+...+.....+..||++|.+......
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 223556666777899999874321 11222222222222235678888888766543
No 317
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.47 E-value=0.073 Score=62.63 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=36.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++||++.++.+...+..+ .-|.+.|.+|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 3789999999999888665 35679999999999999999974
No 318
>PRK06547 hypothetical protein; Provisional
Probab=93.47 E-value=0.099 Score=53.61 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|+|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 319
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.055 Score=55.41 Aligned_cols=26 Identities=46% Similarity=0.443 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
..+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998544
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.43 E-value=0.057 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 321
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.41 E-value=0.056 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 042986 244 IPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~ 264 (1485)
|.|.|..|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999984
No 322
>PRK13948 shikimate kinase; Provisional
Probab=93.35 E-value=0.41 Score=49.50 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999974
No 323
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.24 Score=53.71 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc--cccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ--YYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
-++|.++|++|.|||+|.++++++..++ ..+....-+.+... .++..-..+ ...-...+-+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 3788999999999999999999976443 34433333433221 111111111 12334445556666666
Q ss_pred CCc--EEEEEeCC
Q 042986 319 RKK--FLLVLDDV 329 (1485)
Q Consensus 319 ~kr--~LivlDdv 329 (1485)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 654 44557888
No 324
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.30 E-value=0.099 Score=58.55 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=44.7
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+..++|.++.++++++.+.......+..-+|+.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999997765545567899999999999999999999873
No 325
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.29 E-value=0.26 Score=56.28 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCCcHHH-HHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTT-LAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
-+||++||+.|+|||| ||+..+.-....++ ..++.++... .-...+-++.-.+-++....-..+..++.+.+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 6899999999999985 55555442211222 2345554322 12333334444444544443445556665555443 3
Q ss_pred CCcEEEEEeCC
Q 042986 319 RKKFLLVLDDV 329 (1485)
Q Consensus 319 ~kr~LivlDdv 329 (1485)
+. =+|.+|-+
T Consensus 281 ~~-d~ILVDTa 290 (407)
T COG1419 281 DC-DVILVDTA 290 (407)
T ss_pred cC-CEEEEeCC
Confidence 33 34455655
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.29 E-value=0.4 Score=55.13 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
....++-|+|.+|+|||+++.+++....... .=..++||+..+.|+..++.+ +++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 3468999999999999999988876432211 112789999999888877654 34443
No 327
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.28 E-value=0.35 Score=60.35 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...++|....+.++.+.+..-. . ...-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a---~-~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA---R-SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh---C-cCCCEEEECCCCccHHHHHHHHHHh
Confidence 4579999999999888885432 1 2234569999999999999999974
No 328
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.27 E-value=0.017 Score=60.45 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=47.2
Q ss_pred cccccEEEecccCcccc----ccccccCCCCcceEeeccCCCccc----c--------CCCCCCCCCCEEEEecCCCCCc
Q 042986 1061 SCRLERLELRDCQDLVK----LPKSLLSLSSLTEIRIHNCSSLVS----F--------PDAVLPSQLRVISIWDCGALKF 1124 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~----l~~~l~~l~~L~~L~L~~~~~l~~----~--------~~~~~~~~L~~L~l~~~~~l~~ 1124 (1485)
+..+..++||+|.+.+. +...+.+-.+|+..++++- .++. + +....+|.|+.+++++|..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 56788899999988754 3334555667777776653 1111 1 1112346666666666654443
Q ss_pred Cccc--cccCCCCCccEEEEecCC
Q 042986 1125 LPDA--WMLDNNSSLEILDIRHCH 1146 (1485)
Q Consensus 1125 ~~~~--~~~~~l~~L~~L~l~~c~ 1146 (1485)
.|.. -++++-+.|.+|.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 3321 123455666666666654
No 329
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.27 E-value=0.21 Score=57.63 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=35.7
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 589999999888888755421 223567899999999999999986
No 330
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.27 E-value=0.2 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..+..++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999999954
No 331
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.26 E-value=0.13 Score=58.70 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.-+.++|..|+|||.||.++.+....++ ..++++++.+ ++..+...-. . ...+... .+.. +.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~~~-l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE------LIEILREIRF-N--NDKELEE---VYDL-LIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HHHH-hcc-C
Confidence 5688999999999999999998543222 2345554322 3333322111 0 1111111 1222 222 2
Q ss_pred EEEEEeCCCCCChhhHhh--ccccccc-CCCCcEEEEEccc
Q 042986 322 FLLVLDDVWNENYNDWVD--MSCPFEA-GAPGSKIIVTTRN 359 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 359 (1485)
=|||+||+..+....|.. +...+.. -..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996654344432 2211111 1224568888864
No 332
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.26 E-value=0.051 Score=31.20 Aligned_cols=16 Identities=50% Similarity=0.837 Sum_probs=6.5
Q ss_pred cccEEeccCCcccccC
Q 042986 650 NLRYLNLSGTNIKTLP 665 (1485)
Q Consensus 650 ~Lr~L~Ls~~~i~~lP 665 (1485)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 333
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.25 E-value=0.44 Score=51.26 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccc-ccc---c-------c---CeeEEEEEcCcc------CH----------------
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQ-VQY---Y-------F---DLKAWTCVSDDF------DV---------------- 285 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------F---~~~~wv~~s~~~------~~---------------- 285 (1485)
.+++|+|+.|.|||||.+.+..-.+ .++ - + ..+.||.=...+ .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987221 000 1 1 134554311111 11
Q ss_pred ------HHHHHHHHHhhcCCC-----CCCCCHHHHHHH-HHHHhCCCcEEEEEeCC----CCCChhhHhhcccccccCCC
Q 042986 286 ------IWLTTIILRSITKQT-----IDNSDLNLLQEE-LKKQLSRKKFLLVLDDV----WNENYNDWVDMSCPFEAGAP 349 (1485)
Q Consensus 286 ------~~~~~~il~~l~~~~-----~~~~~~~~~~~~-l~~~l~~kr~LivlDdv----~~~~~~~~~~l~~~l~~~~~ 349 (1485)
.+...+.++.++... ...-+..+.|+. +.+.|..+.=|++||.- +........++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 133444455444322 233444555544 56778889999999964 323333344444444433
Q ss_pred CcEEEEEccchhhhh
Q 042986 350 GSKIIVTTRNREVAA 364 (1485)
Q Consensus 350 gs~iivTtr~~~v~~ 364 (1485)
|.-|+++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998865433
No 334
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.25 E-value=0.41 Score=54.86 Aligned_cols=58 Identities=21% Similarity=0.055 Sum_probs=41.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccc---c-cccCeeEEEEEcCccCHHHHHHHHHHhhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQV---Q-YYFDLKAWTCVSDDFDVIWLTTIILRSIT 297 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 297 (1485)
..-.++-|+|.+|+|||++|..++-.... + ..-..++|++...+|.++++. +|++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 34678899999999999999877743221 1 111368999999999988764 4455543
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.26 Score=51.06 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhc--CCCC---CC--------CCHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSIT--KQTI---DN--------SDLN 307 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~--~~~~---~~--------~~~~ 307 (1485)
-.+++|+|..|.|||||++.+..... .....+++.-..-.+.. ..+-..+. .+.. .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 36899999999999999999987432 12233333110000000 00001110 0000 00 1222
Q ss_pred HHH-HHHHHHhCCCcEEEEEeCCCCCC-hhhHhhccccccc-CCCCcEEEEEccchhhhh
Q 042986 308 LLQ-EELKKQLSRKKFLLVLDDVWNEN-YNDWVDMSCPFEA-GAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 308 ~~~-~~l~~~l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 364 (1485)
+.+ -.+.+.+..++=++++|+--..- ......+...+.. ...|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 222 24566777788899999974321 1222222222221 123677888888876554
No 336
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.22 E-value=0.3 Score=62.93 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=36.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|+...+..+.+.+..-. . ...-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a---~-~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA---Q-SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh---C-CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 368999998888877775431 1 2245679999999999999999974
No 337
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.22 E-value=0.074 Score=57.19 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+..+|+|+|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999974
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.18 Score=49.07 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCC
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQ 299 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~ 299 (1485)
+|.|-|.+|.||||+|+.+.++.... | | +.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68899999999999999999854332 1 1 2335678888776543
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.12 E-value=0.57 Score=52.84 Aligned_cols=53 Identities=17% Similarity=0.033 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
-.++.|.|.+|+||||+|.++...... .+=..++|++... ...++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 358889999999999999988764322 2124578887766 3455666655543
No 340
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.10 E-value=0.33 Score=56.60 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc--ccCeeEEEEEcCccCH--HHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQY--YFDLKAWTCVSDDFDV--IWLTTIILRSITKQTIDNSDLNLLQEELKK 315 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 315 (1485)
...+|.++|..|+||||.+..+........ +-..+..+++ +++.. .+-++...+.++.........+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988876432211 1123344443 33332 233445555554433333455566555555
Q ss_pred HhCCCcEEEEEeCCCC
Q 042986 316 QLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 316 ~l~~kr~LivlDdv~~ 331 (1485)
. .+.=+|++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 4 3456888898743
No 341
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.06 E-value=0.24 Score=57.19 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=49.6
Q ss_pred CceeechhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCeeEEEEEc-Ccc
Q 042986 214 AKVYGRETEKRDIVELLLKD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-YFDLKAWTCVS-DDF 283 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s-~~~ 283 (1485)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.+........ +.+...+...+ ...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45889999888887666531 000111346788999999999999999998432211 11322222211 123
Q ss_pred CHHHHHHHHHHhh
Q 042986 284 DVIWLTTIILRSI 296 (1485)
Q Consensus 284 ~~~~~~~~il~~l 296 (1485)
+...+++.+.+..
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665554
No 342
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.06 E-value=0.33 Score=52.25 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=70.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-----ccCHHHHHHHHHHhhcCCCC------CCCCHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-----DFDVIWLTTIILRSITKQTI------DNSDLNLL 309 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~il~~l~~~~~------~~~~~~~~ 309 (1485)
-.++++||..|.||||+|+.+..-.+ .-...++..-.+ .....+-..++++.++.... ..-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 36899999999999999999997332 112222222111 12233445566666553321 12233344
Q ss_pred HH-HHHHHhCCCcEEEEEeCCCCCCh----hhHhhcccccccCCCCcEEEEEccchhhhhhcC
Q 042986 310 QE-ELKKQLSRKKFLLVLDDVWNENY----NDWVDMSCPFEAGAPGSKIIVTTRNREVAAIMG 367 (1485)
Q Consensus 310 ~~-~l~~~l~~kr~LivlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 367 (1485)
|+ .+.+.|.-+.-+||.|.--..-. .+-..+...+. ...|-..+..|.+-.++..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 43 46677888999999998633211 11111222222 234677888888888877664
No 343
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.2 Score=59.97 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=45.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHH----HHHHHHh
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQ----EELKKQL 317 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~----~~l~~~l 317 (1485)
.-|-|.|..|+|||+||+++++... +.+.-.+..|+++.-. ....+..+ ..+...+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~-------------------~~~~e~iQk~l~~vfse~~ 491 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD-------------------GSSLEKIQKFLNNVFSEAL 491 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc-------------------chhHHHHHHHHHHHHHHHH
Confidence 4577999999999999999998544 4443344555554421 11122233 3344556
Q ss_pred CCCcEEEEEeCCC
Q 042986 318 SRKKFLLVLDDVW 330 (1485)
Q Consensus 318 ~~kr~LivlDdv~ 330 (1485)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6789999999994
No 344
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.03 E-value=0.11 Score=55.89 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.03 E-value=0.079 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|.+|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 346
>PRK14974 cell division protein FtsY; Provisional
Probab=92.95 E-value=0.49 Score=54.05 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCC---CCCHHH-HHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTID---NSDLNL-LQEEL 313 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~---~~~~~~-~~~~l 313 (1485)
+..+|.++|+.|+||||++..++...+.. .+ .++.+. .+.+. ..+-++.....++..... ..+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999888877643222 23 233333 33332 223344455555433221 122222 22333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 042986 314 KKQLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 314 ~~~l~~kr~LivlDdv~~ 331 (1485)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222233888998744
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.94 E-value=0.077 Score=52.62 Aligned_cols=26 Identities=38% Similarity=0.345 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
..||.+.|.+|.||||||+++.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998543
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.93 E-value=0.15 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999985
No 349
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.92 E-value=0.0081 Score=61.18 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=76.9
Q ss_pred CCCCC-CccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccCCCCcccccccc
Q 042986 638 NPELP-DSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTDSLEEMPLGI 716 (1485)
Q Consensus 638 i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 716 (1485)
+..+| ..|.....-..||++.|++-.+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|+ ....|...
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34555 4577788999999999999999999999999999999998 789999999999999999998887 88999999
Q ss_pred cCccccccc
Q 042986 717 GKLTCLRTL 725 (1485)
Q Consensus 717 ~~L~~L~~L 725 (1485)
++++.++.+
T Consensus 108 ~k~~~~k~~ 116 (326)
T KOG0473|consen 108 KKEPHPKKN 116 (326)
T ss_pred cccCCcchh
Confidence 999998887
No 350
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.89 E-value=0.19 Score=56.52 Aligned_cols=86 Identities=19% Similarity=0.077 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-----DNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 313 (1485)
+.-+++-|+|..|+||||||-.+... .+..-..++|+...+.++.... ++++.+.. .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999888863 3344467899999888877543 33332211 234455555555
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 042986 314 KKQLSR-KKFLLVLDDVWN 331 (1485)
Q Consensus 314 ~~~l~~-kr~LivlDdv~~ 331 (1485)
.+.++. ..-++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555543 345888998843
No 351
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.66 Score=57.42 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=85.7
Q ss_pred ceeechhHHHHHHHHH---hcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 215 KVYGRETEKRDIVELL---LKDDLR----NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l---~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
++.|.+..++.+.+.+ +..... +-...+.+-++|++|.|||.||+++.+. .+.+| +.+... +
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~-~--- 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS-E--- 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH-H---
Confidence 4556666555554443 222110 1234568899999999999999999993 33344 222221 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC------C-h----hhHhhcccccccC--CCCcEEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE------N-Y----NDWVDMSCPFEAG--APGSKII 354 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~------~-~----~~~~~l~~~l~~~--~~gs~ii 354 (1485)
+ +.. .-......+.+.+...-+..+..|.+|.++.- . . ....++...+... ..+-.||
T Consensus 312 l----~sk-----~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 L----LSK-----WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred H----hcc-----ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 1 111 01122233444555555678999999999431 0 0 1122222222211 2233355
Q ss_pred EEccchhhhhhc-----CCcCceeCCCCChhhHHHHHHhccc
Q 042986 355 VTTRNREVAAIM-----GTVPAYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 355 vTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
-||..+...... .-...+.+..-+.++..+.|+.+.-
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 555554433211 1234688899999999999999874
No 352
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.84 E-value=0.07 Score=54.62 Aligned_cols=40 Identities=25% Similarity=0.088 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD 281 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 281 (1485)
..++.++|+.|+|||.+|+.+.+-..+ +.....+-++++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhc
Confidence 467889999999999999999874321 2233444455444
No 353
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.75 E-value=0.65 Score=53.17 Aligned_cols=58 Identities=17% Similarity=0.050 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccc----ccccCeeEEEEEcCccCHHHHHHHHHHhhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQV----QYYFDLKAWTCVSDDFDVIWLTTIILRSIT 297 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 297 (1485)
..-++.-|+|.+|+|||+|+.+++-.... .+.-..++|++...+|++.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 35678899999999999999887632221 11224689999999999888755 455543
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.67 E-value=0.37 Score=53.64 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH--HHHHHHHHhhcCCCC---CCCCH-HHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI--WLTTIILRSITKQTI---DNSDL-NLLQEEL 313 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~~---~~~~~-~~~~~~l 313 (1485)
..+++.++|.+|+||||.+..+...... .-..++++.. +.+... +-++...+..+.... ...+. ....+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~--~g~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK--QGKSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888764322 2123444543 333322 222333343332211 11222 2223444
Q ss_pred HHHhCCCcEEEEEeCCC
Q 042986 314 KKQLSRKKFLLVLDDVW 330 (1485)
Q Consensus 314 ~~~l~~kr~LivlDdv~ 330 (1485)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44444445678888763
No 355
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.66 E-value=0.45 Score=54.26 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQL 317 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 317 (1485)
..+++.++|+.|+||||++..+......++ ..+.+|+.. ++. ..+-++...+.++.......+.+++.+.+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 468999999999999999988876432222 235555543 332 234444555555433323345666655554432
Q ss_pred -CCCcEEEEEeCCCC
Q 042986 318 -SRKKFLLVLDDVWN 331 (1485)
Q Consensus 318 -~~kr~LivlDdv~~ 331 (1485)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13446777887743
No 356
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.58 E-value=0.66 Score=58.80 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=80.9
Q ss_pred CceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.++.|.+..++++.+.+..... .+..-.+-|.++|++|.|||++|+.+.+... ..| +.++.. .
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCE-----EEEehH----H
Confidence 3567777666665554421100 0111123488999999999999999987432 222 222211 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHhh----ccccccc--CCCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSCPFEA--GAPGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs 351 (1485)
+. .... ......+.+.+...-...+.+|++|+++.-. ...+.. +...+.. ...+-
T Consensus 221 ~~----~~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 1110 1112233334444444568899999985421 011111 1111111 12344
Q ss_pred EEEEEccchhhhhhc--C---CcCceeCCCCChhhHHHHHHhcc
Q 042986 352 KIIVTTRNREVAAIM--G---TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 352 ~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
-||.||..++..... . -...+.+...+.++-.+++..+.
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 555577766533221 1 23567788888888888887765
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.53 E-value=0.21 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998743
No 358
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.52 E-value=0.38 Score=49.80 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999974
No 359
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.52 E-value=0.26 Score=56.92 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=49.9
Q ss_pred CceeechhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCeeEEEEEc-Ccc
Q 042986 214 AKVYGRETEKRDIVELLLKD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-YFDLKAWTCVS-DDF 283 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s-~~~ 283 (1485)
..++|.++.++.+..++... ..+.......|.++|+.|+|||++|+.+........ +++..-|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 45889999999988887431 000111236788999999999999999987432111 12332222211 123
Q ss_pred CHHHHHHHHHHhh
Q 042986 284 DVIWLTTIILRSI 296 (1485)
Q Consensus 284 ~~~~~~~~il~~l 296 (1485)
+...+.+.+.+..
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5566666666554
No 360
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.50 E-value=0.44 Score=55.72 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=50.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++.. .+.++...++..-... ..+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 22456666676654 3444555544331111 011111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233333 589999999999
No 361
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.62 Score=59.12 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=70.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCC-C-CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRN-D-GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~-~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
..++|.++.+..|.+.+....... + .......+.|+.|+|||.||+++..- +-+..+.-+-+++|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 357888999999988887653211 1 14567788999999999999988862 222223334444333 222
Q ss_pred HHHhhcCCC--CCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHhhcccccc
Q 042986 292 ILRSITKQT--IDNSDLNLLQEELKKQLSRKKF-LLVLDDVWNENYNDWVDMSCPFE 345 (1485)
Q Consensus 292 il~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~-LivlDdv~~~~~~~~~~l~~~l~ 345 (1485)
+.+-++... .+....+ .|.+.++.++| +|.||||...+......+...+.
T Consensus 633 vskligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 222222211 1122233 55666666655 67789998877666554444443
No 362
>PRK06762 hypothetical protein; Provisional
Probab=92.47 E-value=0.1 Score=53.80 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 363
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.35 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 364
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.44 E-value=0.54 Score=53.59 Aligned_cols=57 Identities=19% Similarity=0.030 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc---c-ccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---Y-YFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
....++.|+|.+|+|||||+..++...... + .-..++|++..+.|+..++ .++.+.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 356899999999999999998887532211 1 1235799998888887764 3344443
No 365
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.44 E-value=0.25 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+.|.|+|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998853
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.40 E-value=0.65 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
|..|+|++|+|||+||..+.-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999888753
No 367
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.34 E-value=0.72 Score=50.56 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=33.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
..-+++.|.|.+|+|||++|.++.... . ..-..++||+..+ ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 356899999999999999998765421 1 2235678888766 34444444
No 368
>PTZ00035 Rad51 protein; Provisional
Probab=92.34 E-value=0.9 Score=52.31 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccc----ccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQV----QYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
..-.++.|+|..|.|||||+..++-.... ...=..++|++....|+..++. ++.+..
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHh
Confidence 35689999999999999999888743321 1112356799888888877743 334443
No 369
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.34 E-value=0.22 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37889999999999999998874
No 370
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.28 E-value=0.34 Score=55.76 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=33.1
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 216 VYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 216 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777754321 2234679999999999999999864
No 371
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.27 E-value=0.74 Score=57.88 Aligned_cols=87 Identities=24% Similarity=0.190 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
..|++++|+.|+||||.+.++.........-..+..+.. +.+. ..+-++...+.++.......+.+++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 479999999999999999888864321111123444433 2333 3444555555555444334456666665554 44
Q ss_pred CCcEEEEEeCCC
Q 042986 319 RKKFLLVLDDVW 330 (1485)
Q Consensus 319 ~kr~LivlDdv~ 330 (1485)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 377778764
No 372
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.26 E-value=0.2 Score=48.25 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 221 TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 221 ~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
++.+++.+.+...- ..-.+|.+.|.-|.||||+++.+.....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44555555553321 1235899999999999999999998543
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.15 E-value=0.37 Score=55.86 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++|+|+.|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999875
No 374
>PRK15453 phosphoribulokinase; Provisional
Probab=92.12 E-value=0.56 Score=51.27 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=43.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcC--ccCHHHHHHHHHH--hhcC--CC--CCCCCHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSD--DFDVIWLTTIILR--SITK--QT--IDNSDLNLLQ 310 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~--~~~~~~~~~~il~--~l~~--~~--~~~~~~~~~~ 310 (1485)
+..+|+|.|.+|.||||+|+.+.+..+ +.. ..+.++... .++..+.-..+.+ .-+. .. .++.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999885321 111 122333221 2233333222221 1111 12 3567788888
Q ss_pred HHHHHHhCC
Q 042986 311 EELKKQLSR 319 (1485)
Q Consensus 311 ~~l~~~l~~ 319 (1485)
+.++++..+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888876553
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.09 E-value=0.63 Score=51.43 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-------CCCCHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-------DNSDLNLLQE 311 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~~~ 311 (1485)
.+..+|.|+|..|.|||||...+.+... .... .+.+ ..+..+..+. +.++..+.... --.+...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~~~~-~~VI-~gD~~t~~Da--~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK--DSVP-CAVI-EGDQQTVNDA--ARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc--cCCC-EEEE-CCCcCcHHHH--HHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4679999999999999999999988432 2222 2222 2221222221 12333222111 1123444555
Q ss_pred HHHHHhCCCcEEEEEeCCC
Q 042986 312 ELKKQLSRKKFLLVLDDVW 330 (1485)
Q Consensus 312 ~l~~~l~~kr~LivlDdv~ 330 (1485)
.+.+.-....=++|+++|-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555544445678889984
No 376
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.08 E-value=0.44 Score=58.87 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 35689999999998888865421 2345679999999999999999974
No 377
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.02 E-value=0.087 Score=55.67 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCCcccEEeccCCcccccChhhhccccccEeccccc--cccccccccccCccccceeeccCCC
Q 042986 646 GNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGC--WRLKKLCADMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 646 ~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~ 707 (1485)
-.+..|.+|++.+..++.+ ..+-+|++|++|+++.| .....++.-..++++|++|++++|+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3445666666666665544 23446889999999998 4445555556677999999999998
No 378
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.02 E-value=0.09 Score=49.22 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
|.|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988743
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.02 E-value=0.43 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 380
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.99 E-value=1 Score=45.38 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCC----CCCChhhHhhcccccc-cCCCCcEEEEEccchhhhhhcC
Q 042986 307 NLLQEELKKQLSRKKFLLVLDDV----WNENYNDWVDMSCPFE-AGAPGSKIIVTTRNREVAAIMG 367 (1485)
Q Consensus 307 ~~~~~~l~~~l~~kr~LivlDdv----~~~~~~~~~~l~~~l~-~~~~gs~iivTtr~~~v~~~~~ 367 (1485)
++-.-.|.+.+-+++-+++-|.- +.+ ..|+-+ ..|. -+..|..||++|.+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 33344567777888889988853 222 234322 2222 2456999999999998877653
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.33 Score=49.38 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc--CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF--DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 319 (1485)
.+++|+|..|.|||||++.+..... .....+++....-. ..... ...+.--. .-...+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999997432 23334443321111 11111 11111000 011122222345566666
Q ss_pred CcEEEEEeCCCCC-ChhhHhhccccccc-CCCCcEEEEEccchhhhhh
Q 042986 320 KKFLLVLDDVWNE-NYNDWVDMSCPFEA-GAPGSKIIVTTRNREVAAI 365 (1485)
Q Consensus 320 kr~LivlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 365 (1485)
..=++++|+.-.. +......+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7789999998432 11222223222221 1125678888877766554
No 382
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.97 E-value=0.18 Score=56.01 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 224 RDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 224 ~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+++.+... + +-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~------~-~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN------G-RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC------T-EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc------C-CcEEEECCCCCchhHHHHhhhcc
Confidence 4455666543 2 45579999999999999998864
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.92 E-value=0.23 Score=51.59 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 384
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.83 E-value=0.53 Score=51.44 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc--ccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQV--QYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNLL 309 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~~ 309 (1485)
+-+.++|.|-.|+|||+|+..+.+.... +.+-+.++++-+++.. ++.++..++.+.=..+ ..+.......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999988875431 2234678888888864 4555655555431111 0011111111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCC
Q 042986 310 -----QEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 310 -----~~~l~~~l---~~kr~LivlDdv 329 (1485)
.-.+.+++ +++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12234444 368999999999
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.81 E-value=0.085 Score=49.73 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccC
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDKQVQYYFD 272 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 272 (1485)
|-++|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999998 3455553
No 386
>PRK06217 hypothetical protein; Validated
Probab=91.77 E-value=0.25 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
.|.|.|.+|.||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998543
No 387
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=2.2 Score=44.41 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=94.5
Q ss_pred eee-chhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 216 VYG-RETEKRDIVELLLKDD-------LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 216 ~vG-r~~~~~~l~~~l~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.|| .+..+++|.+.+.-.- .-+-.+++-+.++|++|.|||-||++|+++ ..+.++.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 344 4556666555542210 003345677889999999999999999973 23456777763 2
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHH-HHHhCCCcEEEEEeCCCCCC--------------hhhHhhcccccc--cCCCC
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEEL-KKQLSRKKFLLVLDDVWNEN--------------YNDWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LivlDdv~~~~--------------~~~~~~l~~~l~--~~~~g 350 (1485)
+.+..+.+ . ..+...+ .-.-..-+-+|..|.++... +...-++...+. ...+.
T Consensus 217 lvqk~ige----g------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYIGE----G------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHhhh----h------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 22221111 0 0111111 11112346788888875421 011112222222 12345
Q ss_pred cEEEEEccchhhhhhc--C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHh
Q 042986 351 SKIIVTTRNREVAAIM--G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGG 425 (1485)
Q Consensus 351 s~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 425 (1485)
-+||..|..-++.... . ....++..+-+++.-.++++-+.-.. +....-+++.+|+++....|.--.+.-+=|+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 6777777655543321 2 23457777777777677777664221 1122234566666554433333334444445
Q ss_pred H
Q 042986 426 L 426 (1485)
Q Consensus 426 ~ 426 (1485)
+
T Consensus 366 m 366 (404)
T KOG0728|consen 366 M 366 (404)
T ss_pred H
Confidence 4
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.74 E-value=0.78 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...||.++|..|+||||+|..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888753
No 389
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.72 E-value=0.67 Score=54.56 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC------CCCCCHHH-----H
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT------IDNSDLNL-----L 309 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------~~~~~~~~-----~ 309 (1485)
-.+++|+|..|+|||||++.+....+ ....++|..-.+.-++.++....+....... .+...... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 36899999999999999999886432 2223444432233455544444443321111 01111111 1
Q ss_pred HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 ~~~l~~~l--~~kr~LivlDdv 329 (1485)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 11223333 478999999999
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.71 E-value=0.73 Score=54.18 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=44.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
...+++++|..|+||||++..+..........+.+.++.... .....+-+....+.++.......+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999987765321111122333333222 122223333444444433333334444443333 344
Q ss_pred CCcEEEEEeCC
Q 042986 319 RKKFLLVLDDV 329 (1485)
Q Consensus 319 ~kr~LivlDdv 329 (1485)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34666765
No 391
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.69 E-value=0.14 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999863
No 392
>PRK00625 shikimate kinase; Provisional
Probab=91.67 E-value=0.13 Score=52.87 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.++||.|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 393
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.66 E-value=0.18 Score=53.53 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHH---HHHHHHH-
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLL---QEELKKQ- 316 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~---~~~l~~~- 316 (1485)
.+++.|.|+.|.||||+.+.+....- -.+ ...+|.... ....+...|...+............. ..++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~-la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAI-MAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 37899999999999999988874321 111 111121111 01122233333333221111111111 1112222
Q ss_pred -hCCCcEEEEEeCCCCC-ChhhHh----hcccccccCCCCcEEEEEccchhhhhhcCC
Q 042986 317 -LSRKKFLLVLDDVWNE-NYNDWV----DMSCPFEAGAPGSKIIVTTRNREVAAIMGT 368 (1485)
Q Consensus 317 -l~~kr~LivlDdv~~~-~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 368 (1485)
+..++-|+++|..... +..+.. .+...+. ..|..+|++|...+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 2356789999997432 112211 2222232 237899999999988876643
No 394
>PRK04040 adenylate kinase; Provisional
Probab=91.64 E-value=0.14 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998743
No 395
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.59 E-value=0.7 Score=51.16 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC--CC
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK--QT 300 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~~ 300 (1485)
.+.++..+... ....-++|+|..|.|||||.+.+...... ....+++.- +.....+-.+++...... +.
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRG-KKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECC-EEeecchhHHHHHHHhcccccc
Confidence 44445555432 23567899999999999999999974321 122233210 000000001222222111 11
Q ss_pred C-----C-CCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhh
Q 042986 301 I-----D-NSDLNLLQEELKKQL-SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAI 365 (1485)
Q Consensus 301 ~-----~-~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 365 (1485)
. + .++.... ..+...+ ...+=++++|.+-.. ..+..+...+ ..|..||+||....+...
T Consensus 169 ~~~~r~~v~~~~~k~-~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 169 DVGIRTDVLDGCPKA-EGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccchHH-HHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHHH
Confidence 0 0 0111111 1122222 246779999998433 4444444443 247789999987666443
No 396
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.54 E-value=0.46 Score=56.35 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH---
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL--- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~--- 308 (1485)
+-+.++|.|..|+|||||+.++...... .+-+.++++-+++.. .+.++...+...-... ..+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3468899999999999999888875432 256778888777653 4555555555432111 001111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEeCC
Q 042986 309 --LQEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 309 --~~~~l~~~l---~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 112344454 378999999999
No 397
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.51 E-value=0.28 Score=46.18 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=34.6
Q ss_pred ceeechhHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 215 KVYGRETEKRDIVELLLKDDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|.+-..+.+++.+...-. ....+.-|++.+|..|+|||.+|+.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467776666666665543211 03456789999999999999988777664
No 398
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.49 E-value=0.19 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999754
No 399
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.43 E-value=0.71 Score=54.59 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCCC-------CCCCCHHH---
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQT-------IDNSDLNL--- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~--- 308 (1485)
.-+.++|.|..|+|||||+.++....... +=+.++++-+++.. .+.++.+++...-..+. .+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34688999999999999999887643221 11456777777654 45566666554321110 11111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEeCC
Q 042986 309 --LQEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 309 --~~~~l~~~l---~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122344555 679999999999
No 400
>PLN02348 phosphoribulokinase
Probab=91.42 E-value=0.82 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+...+|+|.|.+|.||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998743
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.37 E-value=0.62 Score=54.28 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-----DNSDLNLLQEELK 314 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 314 (1485)
.-.++.|.|.+|+|||||+.++...... .-..++|++..+. ..++. .-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999988864322 2235677765443 23222 22333332211 1234444444443
Q ss_pred HHhCCCcEEEEEeCC
Q 042986 315 KQLSRKKFLLVLDDV 329 (1485)
Q Consensus 315 ~~l~~kr~LivlDdv 329 (1485)
+ .+.-+||+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 35567888877
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.31 E-value=1 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..|++++|..|+||||.+.++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999988643
No 403
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.30 E-value=0.13 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 404
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.30 E-value=0.14 Score=50.51 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD 281 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 281 (1485)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 48999999999999999999986432 3445555555554
No 405
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.28 E-value=1.1 Score=53.52 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHH-HHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCC
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTT-LAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQ 299 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~ 299 (1485)
.++|++.+... +||.|||..|.|||| |||.+|.+- |..---+.+.++-. ...+.+.+.++++..
T Consensus 361 R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 361 RDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 45566666332 699999999999997 577777642 21112344555543 445677777777543
Q ss_pred CC----------CC----------CCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--hhHhhcccccccCCCCcEEEEEc
Q 042986 300 TI----------DN----------SDLNLLQEELKKQLSRKKFLLVLDDVWNENY--NDWVDMSCPFEAGAPGSKIIVTT 357 (1485)
Q Consensus 300 ~~----------~~----------~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--~~~~~l~~~l~~~~~gs~iivTt 357 (1485)
-. +. .+.--+.+.|.+..-+|=-.||+|...+... +-...+..........-|+|||+
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 11 11 1222334444444445566889998855321 11222222222334577999999
Q ss_pred cchhh---hhhcCCcCceeCC
Q 042986 358 RNREV---AAIMGTVPAYQLK 375 (1485)
Q Consensus 358 r~~~v---~~~~~~~~~~~l~ 375 (1485)
-..+. +..++....+.++
T Consensus 508 ATm~a~kf~nfFgn~p~f~Ip 528 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQFTIP 528 (1042)
T ss_pred ccccHHHHHHHhCCCceeeec
Confidence 76543 3444433333333
No 406
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.39 Score=53.48 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=35.3
Q ss_pred ceeechhHHHHHHHHHhcCCC-----C-CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 215 KVYGRETEKRDIVELLLKDDL-----R-NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~-----~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
++.|.++.++-|.+.+.-.-. . --...+-|..+|++|.|||-||++|+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 467777777777666532110 0 11235678899999999999999999843
No 407
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.24 E-value=0.19 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+|+|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999854
No 408
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.13 E-value=0.47 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcccc
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
+.+.|++|.||||+|+.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999987543
No 409
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.13 E-value=0.12 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+.|.+.|.+|+||||+|+++..-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 357789999999999999998743
No 410
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.08 E-value=0.26 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688899999999999999999854
No 411
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.08 E-value=0.14 Score=54.59 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 412
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.07 E-value=0.83 Score=53.79 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH---
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL--- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~--- 308 (1485)
.-..++|+|..|+|||||++.+.+... .+..+.+-+++.. .+.++....+.+-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999997432 2445556666654 3444444444332111 011111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 --LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 --~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233444 578999999999
No 413
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=1.3 Score=54.02 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=90.7
Q ss_pred cCCceeechhHHHHHHHH---HhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 212 NEAKVYGRETEKRDIVEL---LLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~---l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
.-.++.|.|+.++++.+. |..... -+..-++=|..+|++|.|||.||+++.....+-..+ +|.+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~-------iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-------ISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee-------ccch---
Confidence 345678988776665554 433210 012235668899999999999999999976554222 2221
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHhhccccc----ccCC--C
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------YNDWVDMSCPF----EAGA--P 349 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~~~~~~l~~~l----~~~~--~ 349 (1485)
+.++..-+ .......+...+..+.-+++|++|.++... .+++++.+..+ .... .
T Consensus 218 -----~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 -----DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -----hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 11111110 111122334444555568999999885421 12333322221 1112 2
Q ss_pred CcEEEEEccchhhhhhc--C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 350 GSKIIVTTRNREVAAIM--G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 350 gs~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
|-.|+..|..++|.... . -.+.+.++..+...-.++++-|+-... ..+.-++.. |++.+-|.--
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~-l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP-LAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC-CCCcCCHHH----HhhhCCCccc
Confidence 33444455555554321 2 123455555555566666665542211 111222233 6667766553
No 414
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.02 E-value=0.36 Score=51.62 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 222 EKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
+..++++.+... .++..+|+|.|.+|+|||||...+....+.+++=-.++=|.-|.+++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 455666666543 235689999999999999999888875543333223344444555543
No 415
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.99 E-value=0.3 Score=48.79 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 221 TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 221 ~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+.++++.+++.. +++.++|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446777777821 688999999999999999999854
No 416
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.97 E-value=0.82 Score=48.42 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccc--------CeeEEEEEcCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYF--------DLKAWTCVSDD 282 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 282 (1485)
.++.|+|.+|+||||++..+.........| ..++|+....+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999998887654332222 25677776665
No 417
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=90.92 E-value=0.2 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999887763
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.90 E-value=0.68 Score=59.55 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=82.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc-ccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK-QVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI---DNSDLNLLQEELKKQ 316 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 316 (1485)
.+++.|+|+.|.||||+.+.+.... ..+. ..+|.+..... ...+..+...++.... .......-...+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 4789999999999999998887531 1111 11122111100 0001111111110000 000111111112222
Q ss_pred hC--CCcEEEEEeCCCCC-ChhhHhhc----ccccccCCCCcEEEEEccchhhhhhcCCcCceeCCCCChh-hHHHHHHh
Q 042986 317 LS--RKKFLLVLDDVWNE-NYNDWVDM----SCPFEAGAPGSKIIVTTRNREVAAIMGTVPAYQLKNLSID-DCLSVFAQ 388 (1485)
Q Consensus 317 l~--~kr~LivlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~ 388 (1485)
+. ..+-|+++|..-.. +..+...+ ...+. ..|+.+|+||....+.........+.-..+..+ +... |..
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 22 47899999998542 22222223 22222 358899999999877543322111111111111 1111 111
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhh
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLS 441 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~ 441 (1485)
+... +. + -...|-+|++++ |+|-.+.--|..+... ....+..++.
T Consensus 474 kl~~-G~---~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 474 KLLK-GI---P--GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EECC-CC---C--CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1111 11 1 124577777776 8888887777766544 2334444443
No 419
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=90.82 E-value=1.3 Score=50.02 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTII 292 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 292 (1485)
-+.++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3588999999999999999999843 33578888887753 344555554
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.81 E-value=0.18 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998874
No 421
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.75 E-value=1.3 Score=43.06 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=53.2
Q ss_pred cCCCCCCCcCEEEeeCCCCCcccCCC-CcCccccceEEEccccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCCC-
Q 042986 1267 HGLHKLWRLQEIDIHGCENLVSFPEG-GLLSAKLKRLVIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGMF- 1343 (1485)
Q Consensus 1267 ~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~- 1343 (1485)
..|.++++|+.+.+.. .+..++.. +..+++|+.+.+.+. +..++. .+.++++|+.+.+.+ .+..++...+.
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccc
Confidence 3577788889888875 35555544 666678888888772 555544 566777788888854 34444433322
Q ss_pred CCCcceEEeCCCCCCccccccCcCCccccccceeecc
Q 042986 1344 PTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISG 1380 (1485)
Q Consensus 1344 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1380 (1485)
.++|+.+++..+ +..++. ..|.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHT-TTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEch-hhhcCC-CceEEEECC
Confidence 467777777553 344444 346665 777776665
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=90.74 E-value=0.69 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988875
No 423
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.71 E-value=1.1 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999974
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.71 E-value=0.19 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=0.63 Score=52.75 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-----DNSDLNLLQEELK 314 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 314 (1485)
.-.+|.|-|-+|||||||.-++..+...+. .+.+|+-.+... ++ +--++.++.... ...+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457899999999999999999988543333 567766555432 22 223344442221 2456666665555
Q ss_pred HHhCCCcEEEEEeCCC
Q 042986 315 KQLSRKKFLLVLDDVW 330 (1485)
Q Consensus 315 ~~l~~kr~LivlDdv~ 330 (1485)
+ .+.-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 4 678899999984
No 426
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.70 E-value=1.1 Score=53.08 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhccccc-----ccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC--------CCCCC
Q 042986 240 GFSVIPIIGMGGLGKTTLA-QLVYNDKQV-----QYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT--------IDNSD 305 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~--------~~~~~ 305 (1485)
+-+.++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++......-+.+.+++-+.-. .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 555664322 124457888888887543322333333332100 01111
Q ss_pred HHH-----HHHHHHHHh--CCCcEEEEEeCC
Q 042986 306 LNL-----LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 306 ~~~-----~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..+ ..-.+.+++ +++.+|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 111223333 578999999999
No 427
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=90.66 E-value=0.16 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.63 E-value=0.97 Score=45.79 Aligned_cols=117 Identities=15% Similarity=-0.011 Sum_probs=57.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeE---EEEEcCccCHHHHHHHHHHh---hcCCC-CCCCC-------HH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKA---WTCVSDDFDVIWLTTIILRS---ITKQT-IDNSD-------LN 307 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~~s~~~~~~~~~~~il~~---l~~~~-~~~~~-------~~ 307 (1485)
..|-|++..|.||||.|..+.-... ...+ .+. |+.-.........++...-. .+... ....+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL-GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5777888899999999976665321 1111 122 22222122333333332000 01000 00111 11
Q ss_pred HHHHHHHHHhCCC-cEEEEEeCCCC---CChhhHhhcccccccCCCCcEEEEEccch
Q 042986 308 LLQEELKKQLSRK-KFLLVLDDVWN---ENYNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 308 ~~~~~l~~~l~~k-r~LivlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
+.-+..++.+... -=++|||.+-. ...-+.+++...+....++.-||+|-|..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223334445444 45999999832 11223345555555556677999999986
No 429
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.53 E-value=0.46 Score=53.08 Aligned_cols=42 Identities=21% Similarity=0.122 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999988887 34445778999988875
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.50 E-value=0.57 Score=49.32 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
+.|.|.+|+|||++|.++..... + .=..++|++..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCCC
Confidence 57899999999999988766322 1 1235678876553
No 431
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.49 E-value=0.34 Score=52.49 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHH
Q 042986 224 RDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 224 ~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 289 (1485)
.+++..+... .++..||+|.|.+|+|||||.-.+......++|=-.++=|.-|.+|+--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 3445555432 3467899999999999999998888766555554445556666666544443
No 432
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.46 E-value=0.28 Score=52.85 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCC-CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLR-NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+..++|..-.++.++..+...-.. ...++-|++.+|..|+||.-.|+.+.+..
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 345788888888888877542111 33467899999999999999999888754
No 433
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.44 E-value=0.63 Score=47.50 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=43.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHh--hcCCCCCC-CCHHHHHHHHHHHhCCC
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRS--ITKQTIDN-SDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~--l~~~~~~~-~~~~~~~~~l~~~l~~k 320 (1485)
+.|.|..|+|||++|.++... ....++++.-.+.+|.+ ..+.|... ........ .....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999998753 22356677666777653 33333332 12222211 1222333333222 2 2
Q ss_pred cEEEEEeCC
Q 042986 321 KFLLVLDDV 329 (1485)
Q Consensus 321 r~LivlDdv 329 (1485)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 434
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.44 E-value=0.18 Score=28.93 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=11.5
Q ss_pred CcccEEEecCCCCCCCC
Q 042986 626 QRLRVFSLRGYHNPELP 642 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp 642 (1485)
++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998887
No 435
>PRK04328 hypothetical protein; Provisional
Probab=90.40 E-value=1 Score=49.74 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
.-+++.|.|.+|.|||+||.++.... . ..-...+|++..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45799999999999999998876532 1 22345788887664
No 436
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=90.40 E-value=0.27 Score=64.39 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=73.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccc--cccccCeeEEEEEcC-----ccCHH-HHHHHHHHhhcCCCCCCCCHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQ--VQYYFDLKAWTCVSD-----DFDVI-WLTTIILRSITKQTIDNSDLNLLQEE 312 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~s~-----~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~ 312 (1485)
..-+.|+|.+|.||||+.+.+.-... ....=+..+++.... .+... .+..-+...+..+.. ..+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHH
Confidence 34788999999999999887764321 111223344444321 11111 122222222222221 1222223
Q ss_pred HHHHhCCCcEEEEEeCCCCCChhhHhhc---ccccccCCCCcEEEEEccchhhhhhcCCcCceeCCCCChhhHH
Q 042986 313 LKKQLSRKKFLLVLDDVWNENYNDWVDM---SCPFEAGAPGSKIIVTTRNREVAAIMGTVPAYQLKNLSIDDCL 383 (1485)
Q Consensus 313 l~~~l~~kr~LivlDdv~~~~~~~~~~l---~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 383 (1485)
..++++..++++++|.++......-... ...+...-+.+.||+|.|....-........+++..+.++...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 3678888999999999866432211111 1112233458899999987655444333445566666655544
No 437
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.39 E-value=0.66 Score=50.24 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC--ccCHHHHHHHHHHhh----cCCC--CCCCCHHHHHHHHH
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD--DFDVIWLTTIILRSI----TKQT--IDNSDLNLLQEELK 314 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l----~~~~--~~~~~~~~~~~~l~ 314 (1485)
+|+|.|..|.||||+|+.+....+..+ ..++.++... .++....-..+.+.. .-.. .++.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886332111 1123333211 122222222222221 1122 45677888888888
Q ss_pred HHhCCC
Q 042986 315 KQLSRK 320 (1485)
Q Consensus 315 ~~l~~k 320 (1485)
++-+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 877655
No 438
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.39 E-value=0.23 Score=49.12 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
.+..||...|.+|.||||+|.+++....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998543
No 439
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.38 E-value=0.5 Score=54.85 Aligned_cols=63 Identities=22% Similarity=0.094 Sum_probs=45.4
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++|+++.+..+...+..+ .-+.+.|.+|+|||+||+.+.... ... ..+|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~~~---~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--GLP---FVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--CCC---eEEEecCCCCCHHHhcC
Confidence 3789888888887777654 356789999999999999999843 222 35566666666555543
No 440
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.36 E-value=0.91 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 042986 244 IPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~ 264 (1485)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 441
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.33 E-value=1.3 Score=48.98 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD--VIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
..+++++|.+|+||||+++.+......+. ..+.+++.. .+. ...-++...+.++.......+.+.+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 36999999999999999988876322111 234445443 222 1122222222232222222344555544443311
Q ss_pred -CCcEEEEEeCCCC
Q 042986 319 -RKKFLLVLDDVWN 331 (1485)
Q Consensus 319 -~kr~LivlDdv~~ 331 (1485)
.+.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2456788888744
No 442
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.26 E-value=0.26 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|+|+|++|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 443
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.26 E-value=0.69 Score=54.56 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH---
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL--- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~--- 308 (1485)
+-+.++|.|..|+|||+|+.++..... +.+-+.++++-+++.. .+.++.+.+...-..+ ..+......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999877532 2334788888887765 3445555554331111 011111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEeCC
Q 042986 309 --LQEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 309 --~~~~l~~~l---~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 112344554 468999999999
No 444
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.24 E-value=0.22 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++++|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999983
No 445
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.23 E-value=0.23 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 042986 244 IPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999999754
No 446
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.18 E-value=0.19 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999874
No 447
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.18 E-value=0.21 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 448
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.12 E-value=1 Score=53.02 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
-..++|+|..|+|||||++.+....+. +..+.+.+.+ .-.+.++.+..+..-..+ ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 368899999999999999999874321 2222233333 233444544443332111 011111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112233444 578999999999
No 449
>PTZ00494 tuzin-like protein; Provisional
Probab=90.03 E-value=6.1 Score=45.49 Aligned_cols=168 Identities=13% Similarity=0.137 Sum_probs=104.6
Q ss_pred ccCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 211 VNEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 211 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.....+|.|+++-..+.+.|...+ ...++++.+.|.-|.||++|.+.....+.. ..++|.|..+-| -++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHH
Confidence 446678999999888888887653 357899999999999999999988875433 356788777654 478
Q ss_pred HHHHhhcCCCCCC--CCHHHHHHHHHHH---hCCCcEEEEEeCCCCCCh-hhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 291 IILRSITKQTIDN--SDLNLLQEELKKQ---LSRKKFLLVLDDVWNENY-NDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 291 ~il~~l~~~~~~~--~~~~~~~~~l~~~---l~~kr~LivlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
.+++.++.+..+. +-++-+.+..+.. ..++.=+||+-==...+. ..+.+. ..+.....-+.|++----+.+.-
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhch
Confidence 8889988776542 3344444444332 345555555542211111 112222 12334445566776544333221
Q ss_pred hcC---CcCceeCCCCChhhHHHHHHhcc
Q 042986 365 IMG---TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 365 ~~~---~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
... ....|.+..++.++|.++..+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 12468899999999998877653
No 450
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.02 E-value=0.25 Score=49.73 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEE
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTC 278 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 278 (1485)
|++|+|+.|+||||++..+....+.+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 58899999999999999999854332 344444433
No 451
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=6.4 Score=48.51 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=62.5
Q ss_pred CceeechhHHHHHHHHHhcCC-----C-CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDD-----L-RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~-----~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.++=|.++-+.+|.+.+.-.- . .+-.+.+=|-.+|++|.|||-+|++|+.... ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----H
Confidence 456688888888888763210 0 0112345677899999999999999998432 234555443 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~ 331 (1485)
++..-- ..+.+.+.+.+.+.=..++++|.+|.++.
T Consensus 741 ----LLNMYV-----GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 ----LLNMYV-----GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ----HHHHHh-----cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 111111 22344555666666677899999999965
No 452
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=89.95 E-value=0.24 Score=49.00 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 042986 243 VIPIIGMGGLGKTTLAQLVY 262 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~ 262 (1485)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 453
>PRK12678 transcription termination factor Rho; Provisional
Probab=89.95 E-value=0.89 Score=54.34 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeE-EEEEcCccC-HHHHHHHHHHhhcCCCCCCCCHH-----HHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKA-WTCVSDDFD-VIWLTTIILRSITKQTIDNSDLN-----LLQEEL 313 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~-~~~~~~~il~~l~~~~~~~~~~~-----~~~~~l 313 (1485)
-+...|+|.+|+|||||++.+.+.... .+-++.+ .+-|.+... +.++.+.+-.++.....+..... .+.-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999984321 2223333 444555432 33333222111111111111111 112223
Q ss_pred HHHh--CCCcEEEEEeCC
Q 042986 314 KKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 314 ~~~l--~~kr~LivlDdv 329 (1485)
.+++ .++.+||++|++
T Consensus 495 Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 3444 678999999999
No 454
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=89.92 E-value=0.44 Score=59.31 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=54.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|.+..++.+...+... +.+.++|.+|.||||+|+.+.+.. ...+++..+|..-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 45889998888887766432 357889999999999999998743 23346777886553 346677777777
Q ss_pred HhhcC
Q 042986 294 RSITK 298 (1485)
Q Consensus 294 ~~l~~ 298 (1485)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66554
No 455
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=89.90 E-value=0.37 Score=50.18 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
.|+|+|-||+||||+|..+......++.|+ +.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988554322222233 344555455543
No 456
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=89.90 E-value=0.43 Score=49.63 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=30.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++|.+..+..+.-.... ..-+.++|..|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4578988888877655532 25778999999999999999875
No 457
>PRK13949 shikimate kinase; Provisional
Probab=89.89 E-value=0.23 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
-|.|+|+.|.||||+|+.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999843
No 458
>PRK08149 ATP synthase SpaL; Validated
Probab=89.83 E-value=1.1 Score=52.76 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-cCHHHHHHHHHHhhcCCC-------CCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-FDVIWLTTIILRSITKQT-------IDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~-------~~~~~~~~---- 308 (1485)
-..++|+|..|+|||||++.+..... -+.++...+... -++.++..+......... .+......
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46889999999999999999997432 233333444443 345566566555422111 11111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
....+.+++ ++|.+|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 112233333 589999999999
No 459
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=5.6 Score=42.94 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=36.7
Q ss_pred ceeechhHHHHHHHHHhcCC-----CC-CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 215 KVYGRETEKRDIVELLLKDD-----LR-NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~-----~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
++.|.+..++.+.+.+.-.- .. .....+-|.++|++|.||+.||++|....
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 46688888888877653210 00 12236778899999999999999999843
No 460
>PRK05973 replicative DNA helicase; Provisional
Probab=89.79 E-value=1 Score=48.64 Aligned_cols=49 Identities=10% Similarity=-0.057 Sum_probs=32.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
.-.++.|.|.+|+|||++|.++..... + .-..+++++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 346888999999999999988776332 2 2234666666554 44444443
No 461
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=89.78 E-value=1.7 Score=49.23 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-cCHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-FDVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
-..++|+|..|.|||||.+.+...... +..+..-+.+. -++.++....+..-... ..+......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 367899999999999999999974321 33344444432 34555555444432111 111111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 111222333 588999999998
No 462
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=89.72 E-value=2.5 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|..|.|||||++.+..-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999863
No 463
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=89.68 E-value=1.4 Score=48.26 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccccccCee-EEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHH---
Q 042986 241 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFDLK-AWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLN--- 307 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 307 (1485)
-+.++|.|..|+|||+|| +.+.+.. +-+.+ +++-+.+.. ++.++.+++.+.-..+ ..+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 6666521 23444 666677764 4555555555331111 01111111
Q ss_pred ------HHHHHHHHHhCCCcEEEEEeCC
Q 042986 308 ------LLQEELKKQLSRKKFLLVLDDV 329 (1485)
Q Consensus 308 ------~~~~~l~~~l~~kr~LivlDdv 329 (1485)
.+.+.++. +++.+|+++||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 12233333 578999999999
No 464
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.66 E-value=3.8 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
-.+++|+|..|.|||||++.+..-.
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3689999999999999999998743
No 465
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.62 E-value=0.22 Score=49.96 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
||.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999974
No 466
>PRK13947 shikimate kinase; Provisional
Probab=89.57 E-value=0.24 Score=51.31 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 467
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.56 E-value=0.28 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
-.+++|+|..|.||||||+.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.50 E-value=0.5 Score=54.90 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
..+.|.|+.|.||||+.+.+.+. ...+...+++. +.++.... ... ...+..+.....+.....+.++..++...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRN-KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccC-ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 68999999999999999998863 22233344443 33321110 000 00000011111112335566778888889
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhh
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREV 362 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 362 (1485)
=.|++|.+.+. +.+..... ....|-.|+.|.....+
T Consensus 197 d~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSA 232 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCH
Confidence 99999999654 33333222 22346556666654443
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.49 E-value=1.1 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
...+++++|+.|+||||++..+....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999887543
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.48 E-value=0.32 Score=44.68 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVY 262 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~ 262 (1485)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3688999999999999999986
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.39 E-value=1.5 Score=47.88 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=29.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
.-.++.|.|.+|+||||+|.++....- + .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h-cCCeEEEEEccCC
Confidence 457999999999999999988764221 1 2346788876543
No 472
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.31 E-value=0.26 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 042986 244 IPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 244 i~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999974
No 473
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.30 E-value=0.32 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999984
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.28 E-value=0.29 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 475
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=89.27 E-value=0.46 Score=44.78 Aligned_cols=82 Identities=22% Similarity=0.202 Sum_probs=44.4
Q ss_pred EEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEE
Q 042986 245 PIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLL 324 (1485)
Q Consensus 245 ~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~Li 324 (1485)
.|.|-+|+|||+|++.+.+| +|....-.+.+-.|-+..+--. -..+..+..+....+........+.++...++
T Consensus 12 lIigDsgVGKssLl~rF~dd-----tFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADD-----TFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HeecCCcccHHHHHHHHhhc-----ccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 48899999999999999986 3433222222222211100000 01111122233344444555566777888888
Q ss_pred EEeCCCCC
Q 042986 325 VLDDVWNE 332 (1485)
Q Consensus 325 vlDdv~~~ 332 (1485)
|.=||-+.
T Consensus 86 vVYDVTn~ 93 (198)
T KOG0079|consen 86 VVYDVTNG 93 (198)
T ss_pred EEEECcch
Confidence 88888543
No 476
>COG4240 Predicted kinase [General function prediction only]
Probab=89.19 E-value=1.2 Score=45.99 Aligned_cols=81 Identities=19% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC-----CCCCCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK-----QTIDNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~~~l 313 (1485)
++.-+++|.|+-|.||||+|..+++....++- ..++..+..+=+-...-.-.++++... ...+..+..-+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 35789999999999999999999986544442 345555544433222233344444321 223556777777788
Q ss_pred HHHhCCC
Q 042986 314 KKQLSRK 320 (1485)
Q Consensus 314 ~~~l~~k 320 (1485)
....+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 7777776
No 477
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=89.18 E-value=0.37 Score=50.42 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEE
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWT 277 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 277 (1485)
+++.|+|+.|+|||||++.+... ....|...++.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~ 36 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSH 36 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHh--cccccccceee
Confidence 68899999999999999999983 33455433333
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.15 E-value=0.3 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999984
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=89.14 E-value=1.3 Score=52.55 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
+-.+++|.|..|.|||||++.+....... ..+++..-.+...+.++.+.+...-... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34688999999999999999998743321 1233333233344555545544331111 001111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 478999999999
No 480
>PRK13975 thymidylate kinase; Provisional
Probab=89.13 E-value=0.3 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998543
No 481
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=89.13 E-value=1.5 Score=45.86 Aligned_cols=118 Identities=17% Similarity=0.087 Sum_probs=55.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHHhCC
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI---DNSDLNLLQEELKKQLSR 319 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~ 319 (1485)
|+.|.|..|.||||+.+.+.-... -.+-.+ +|.... +.+ .....++..+..... .......-..++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~--~v~a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGS--FVPAES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCC--Ceeehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 467999999999999999883211 111111 111110 000 001111111111110 111122222234444444
Q ss_pred --CcEEEEEeCCCCCC-hhhHhh----cccccccCCCCcEEEEEccchhhhhhc
Q 042986 320 --KKFLLVLDDVWNEN-YNDWVD----MSCPFEAGAPGSKIIVTTRNREVAAIM 366 (1485)
Q Consensus 320 --kr~LivlDdv~~~~-~~~~~~----l~~~l~~~~~gs~iivTtr~~~v~~~~ 366 (1485)
++-++++|..-..- ..+-.. +...+.. ..|..+|++|...++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 78999999984421 111111 2222221 2377899999998877654
No 482
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=89.08 E-value=1.7 Score=51.32 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
-..++|+|..|.|||||++.+.... ..+.++...+.... ++.++...+...-... ..+......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 12333333344432 3444444444332111 111111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
....+.+++ +++.+|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 112233333 578999999999
No 483
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=4.7 Score=42.38 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=37.0
Q ss_pred ceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 215 KVYGRETEKRDIVELLLKDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
++=|-+..++++++.+.-.... +-..++-|..+|++|.|||-+|++...
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 4668899999999887543210 123456678999999999999999886
No 484
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=89.04 E-value=1.8 Score=51.06 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-cCHHHHHHHHHHhhcCC-------CCCCCCHHHH--
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-FDVIWLTTIILRSITKQ-------TIDNSDLNLL-- 309 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~~-- 309 (1485)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+...+....=..+ ..+.......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999998743 2344566656554 33434444433210000 0011111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 ---QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 ---~~~l~~~l--~~kr~LivlDdv 329 (1485)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 11233333 478999999999
No 485
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.01 E-value=1.3 Score=47.60 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++.|.|..|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999988876
No 486
>PRK06936 type III secretion system ATPase; Provisional
Probab=89.01 E-value=1.5 Score=51.76 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCCC-------CCCCCHHHH--
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQT-------IDNSDLNLL-- 309 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~~-- 309 (1485)
+-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++....+..-..+. .+.......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999998432 2567777777764 34444433332211110 011111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 ---QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 ---~~~l~~~l--~~kr~LivlDdv 329 (1485)
.-.+.+++ +++.+|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233333 589999999999
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.00 E-value=0.39 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 488
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=88.96 E-value=1.4 Score=46.84 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
..|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999997543
No 489
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=88.96 E-value=1.5 Score=52.28 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhcccccccccCe-eEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFDL-KAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNLL 309 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~~ 309 (1485)
+-+.++|.|..|+|||||| ..+.+.. .-+. ++++-+++.. .+.++...+.+.=..+ ..+.......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 4467899999999999996 5777632 3354 6888888864 4455555554431111 0011111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 -----QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 -----~~~l~~~l--~~kr~LivlDdv 329 (1485)
...+.+++ +++.+|+|+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 11233444 578999999999
No 490
>PRK14530 adenylate kinase; Provisional
Probab=88.93 E-value=0.29 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+.|.|+|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999873
No 491
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.93 E-value=0.045 Score=55.19 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=20.3
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENL 1262 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 1262 (1485)
++.++-+++.++..-.+.+.++++++.|.+.+|...
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 666666666555544454555555555555555443
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=88.92 E-value=0.26 Score=49.15 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQY 269 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 269 (1485)
.+|++|+|+.|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 37999999999999999999988554443
No 493
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.91 E-value=0.31 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|.|+|+.|.||||+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999974
No 494
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=88.91 E-value=2.5 Score=44.35 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
--|.|+|.+|+|||||++.+.+.
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34669999999999999998864
No 495
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=88.90 E-value=0.9 Score=55.59 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999988888888754321 2245679999999999999999975
No 496
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.90 E-value=1.4 Score=48.90 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
.-+++.|.|.+|+|||++|.++..... + .-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecCC
Confidence 457899999999999999988765321 1 2235777877643
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.83 E-value=1.5 Score=47.60 Aligned_cols=48 Identities=19% Similarity=0.022 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 292 (1485)
-.++.|.|..|.||||+|.++..... +.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 46999999999999999866554321 122 3456666333 445555554
No 498
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.81 E-value=2.7 Score=48.45 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 223 KRDIVELLLKDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+++++.|-..... ....+.||-.||.-|.||||-|-.+.+..
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 34555666431111 12357899999999999999998877644
No 499
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=88.72 E-value=1.8 Score=51.11 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH----
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL---- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 308 (1485)
-..++|+|..|.|||||++.+.+... .+..+.+.+.+.. .+.++.......-..+ ..+......
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999987432 2334445555543 3444444433321100 011111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 042986 309 -LQEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 309 -~~~~l~~~l--~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 111223333 578999999999
No 500
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=88.71 E-value=0.9 Score=56.13 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=34.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|....+.++++.+..-.. .. .-|.|+|..|+||+++|+.++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~---~~-~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM---LD-APLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC---CC-CCEEEECCCCccHHHHHHHHHHh
Confidence 3589999888888777743211 12 33679999999999999998763
Done!