Query 042986
Match_columns 1485
No_of_seqs 796 out of 6283
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.5E-47 1.2E-51 495.9 25.6 649 618-1483 69-766 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 9.1E-47 3.1E-51 468.3 23.3 315 217-554 131-472 (549)
3 3rgz_A Protein brassinosteroid 100.0 8.4E-44 2.9E-48 464.1 28.6 586 618-1384 92-717 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-36 1.2E-40 390.0 40.9 301 1057-1382 267-595 (680)
5 1vt4_I APAF-1 related killer D 100.0 4.1E-38 1.4E-42 386.9 18.9 285 216-547 130-437 (1221)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-36 6.6E-41 392.5 33.1 567 626-1383 25-621 (680)
7 3t6q_A CD180 antigen; protein- 100.0 6.9E-35 2.4E-39 372.6 35.5 155 1226-1383 401-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.5E-34 5E-39 369.6 29.3 510 627-1357 34-559 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 9.8E-35 3.3E-39 371.2 27.6 514 626-1358 32-558 (606)
10 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-35 8.4E-40 411.7 23.8 310 212-553 122-452 (1249)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-33 5.4E-38 360.0 35.3 95 628-725 13-109 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.9E-31 1.7E-35 347.5 45.9 267 1057-1383 285-559 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-31 7.4E-36 350.9 38.8 101 625-725 23-128 (844)
14 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-32 6.6E-37 347.1 22.8 304 213-550 123-449 (591)
15 2z63_A TOLL-like receptor 4, v 100.0 9.5E-30 3.2E-34 323.0 30.7 155 1226-1383 374-530 (570)
16 2z63_A TOLL-like receptor 4, v 100.0 5.2E-30 1.8E-34 325.4 26.2 133 1227-1359 398-532 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 3.6E-30 1.2E-34 330.2 23.5 132 1226-1382 729-862 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-29 1.5E-33 314.9 28.6 347 626-1146 26-398 (549)
19 2z81_A CD282 antigen, TOLL-lik 100.0 2E-29 6.8E-34 318.1 22.4 448 619-1290 43-514 (549)
20 4eco_A Uncharacterized protein 100.0 8.6E-30 2.9E-34 323.7 18.1 67 658-725 192-278 (636)
21 4eco_A Uncharacterized protein 100.0 9.3E-29 3.2E-33 314.1 26.5 64 805-868 202-284 (636)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-28 3.9E-33 308.4 23.3 87 1059-1146 321-410 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-28 6.4E-33 316.3 25.2 99 626-726 52-154 (635)
24 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-28 1.3E-32 303.6 24.1 83 629-714 3-86 (520)
25 4ecn_A Leucine-rich repeat pro 100.0 2.7E-27 9.2E-32 303.7 28.5 104 1226-1332 674-787 (876)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-26 4.9E-31 291.5 28.6 88 624-715 29-118 (562)
27 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-26 2.9E-30 291.4 35.9 92 630-725 35-129 (635)
28 1jl5_A Outer protein YOPM; leu 99.9 8E-27 2.7E-31 282.3 24.1 80 623-714 8-88 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.5E-26 1.5E-30 286.9 23.4 102 618-725 46-151 (562)
30 1jl5_A Outer protein YOPM; leu 99.9 2.8E-25 9.7E-30 268.7 23.9 254 1062-1412 173-426 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-25 1.8E-29 266.7 19.7 97 620-725 36-132 (457)
32 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4.1E-28 257.9 26.5 96 624-725 44-139 (466)
33 1o6v_A Internalin A; bacterial 99.9 4.2E-23 1.4E-27 253.0 23.8 99 621-725 63-161 (466)
34 3v47_A TOLL-like receptor 5B a 99.9 8E-23 2.7E-27 250.9 25.0 339 928-1331 21-381 (455)
35 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.3E-27 249.1 23.5 131 981-1146 30-165 (455)
36 4fmz_A Internalin; leucine ric 99.9 3.5E-22 1.2E-26 235.2 19.7 97 623-725 41-137 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-21 7.3E-26 235.0 21.0 355 808-1318 41-395 (457)
38 4fmz_A Internalin; leucine ric 99.9 2.5E-21 8.4E-26 228.0 19.7 304 957-1357 42-345 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 4.8E-20 1.6E-24 227.3 28.9 277 1057-1383 51-332 (477)
40 3o6n_A APL1; leucine-rich repe 99.8 1.3E-20 4.5E-25 225.4 20.6 239 1057-1331 88-328 (390)
41 2id5_A Lingo-1, leucine rich r 99.8 3.6E-20 1.2E-24 228.4 24.7 133 1226-1359 201-334 (477)
42 3o6n_A APL1; leucine-rich repe 99.8 5E-20 1.7E-24 220.3 23.5 300 937-1332 44-350 (390)
43 3oja_B Anopheles plasmodium-re 99.8 2.4E-20 8.2E-25 235.7 19.7 262 1057-1357 94-357 (597)
44 3oja_B Anopheles plasmodium-re 99.8 7.9E-20 2.7E-24 230.9 23.2 107 1221-1333 251-357 (597)
45 4fcg_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 209.1 17.0 94 624-718 79-172 (328)
46 1xku_A Decorin; proteoglycan, 99.8 1.9E-18 6.6E-23 201.2 24.5 293 982-1381 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-18 5.2E-23 202.2 22.2 294 982-1382 34-331 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 3E-19 1E-23 205.5 11.1 248 1062-1382 50-302 (313)
49 1xku_A Decorin; proteoglycan, 99.8 2.5E-17 8.6E-22 191.8 26.6 153 1226-1384 122-276 (330)
50 4fcg_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 196.9 19.6 232 1061-1382 80-312 (328)
51 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-17 5.9E-22 193.2 23.3 242 1062-1384 33-277 (332)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.7E-23 200.8 10.0 231 1057-1357 71-303 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.7 3.5E-17 1.2E-21 203.4 21.7 80 625-714 39-118 (622)
54 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.1E-23 220.9 8.2 366 961-1381 140-548 (592)
55 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4E-23 221.9 2.5 304 1059-1382 189-524 (592)
56 3g06_A SSPH2 (leucine-rich rep 99.7 7.3E-16 2.5E-20 191.6 26.7 258 1062-1384 40-297 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-17 9.5E-22 189.7 10.5 243 1057-1382 29-273 (317)
58 1z7x_W Ribonuclease inhibitor; 99.7 4.7E-19 1.6E-23 217.8 -6.7 377 958-1414 2-439 (461)
59 3zyj_A Leucine-rich repeat-con 99.7 1E-15 3.4E-20 185.9 19.9 200 1061-1331 63-265 (440)
60 2p1m_B Transport inhibitor res 99.7 1.2E-18 4.2E-23 221.9 -6.2 154 1226-1381 373-541 (594)
61 2z66_A Variable lymphocyte rec 99.7 5.8E-16 2E-20 178.2 16.7 131 1227-1357 128-260 (306)
62 3zyi_A Leucine-rich repeat-con 99.7 1.5E-15 5.1E-20 185.0 20.5 224 1061-1332 74-301 (452)
63 3oja_A Leucine-rich immune mol 99.7 1.7E-16 5.7E-21 194.0 11.7 240 1059-1381 31-272 (487)
64 2z80_A TOLL-like receptor 2, v 99.7 5.5E-16 1.9E-20 182.3 15.5 253 1061-1383 51-313 (353)
65 1ozn_A Reticulon 4 receptor; N 99.7 2.4E-16 8.2E-21 179.1 11.8 204 1061-1332 31-236 (285)
66 3zyj_A Leucine-rich repeat-con 99.7 3.7E-15 1.2E-19 180.9 22.9 154 1226-1383 137-291 (440)
67 3zyi_A Leucine-rich repeat-con 99.6 2.6E-15 8.9E-20 182.9 21.6 203 1057-1308 94-301 (452)
68 2z66_A Variable lymphocyte rec 99.6 4.5E-16 1.5E-20 179.1 14.0 108 1226-1333 151-260 (306)
69 1z7x_W Ribonuclease inhibitor; 99.6 6.1E-18 2.1E-22 207.9 -2.0 199 915-1146 2-238 (461)
70 1wwl_A Monocyte differentiatio 99.6 5.2E-17 1.8E-21 186.9 5.4 253 1059-1384 40-309 (312)
71 2z80_A TOLL-like receptor 2, v 99.6 2.4E-15 8.2E-20 176.8 19.4 233 1057-1357 71-313 (353)
72 3o53_A Protein LRIM1, AGAP0063 99.6 5.4E-17 1.9E-21 187.2 3.4 79 1057-1146 53-131 (317)
73 2p1m_B Transport inhibitor res 99.6 2.5E-17 8.4E-22 209.8 -1.5 136 1246-1383 369-518 (594)
74 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-15 2.5E-19 166.9 19.1 154 1227-1383 82-237 (285)
75 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.8E-19 159.5 18.2 151 1226-1381 32-189 (239)
76 3qfl_A MLA10; coiled-coil, (CC 99.6 1.9E-15 6.4E-20 140.5 7.9 79 12-90 2-82 (115)
77 1wwl_A Monocyte differentiatio 99.6 1.3E-15 4.5E-20 175.1 7.8 224 1226-1460 64-308 (312)
78 3oja_A Leucine-rich immune mol 99.6 8.7E-15 3E-19 178.8 14.9 197 1057-1334 53-250 (487)
79 2xwt_C Thyrotropin receptor; s 99.6 5.7E-14 1.9E-18 154.7 18.1 208 1238-1461 23-239 (239)
80 2z62_A TOLL-like receptor 4, v 99.5 3.8E-14 1.3E-18 160.1 16.4 203 1223-1436 26-235 (276)
81 4ay9_X Follicle-stimulating ho 99.5 3E-13 1E-17 158.2 22.6 168 1230-1433 85-254 (350)
82 1w5s_A Origin recognition comp 99.5 1.5E-13 5.1E-18 165.7 20.5 311 213-542 21-387 (412)
83 2z62_A TOLL-like receptor 4, v 99.5 5.4E-14 1.9E-18 158.8 15.3 201 1061-1332 27-235 (276)
84 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.7E-18 155.7 17.8 200 1082-1357 6-207 (290)
85 2qen_A Walker-type ATPase; unk 99.5 2.1E-13 7E-18 160.5 19.3 292 212-547 10-349 (350)
86 1h6u_A Internalin H; cell adhe 99.5 2.1E-14 7.2E-19 164.3 9.5 190 624-868 39-228 (308)
87 2o6q_A Variable lymphocyte rec 99.5 4.5E-13 1.6E-17 150.4 20.1 103 1227-1331 87-191 (270)
88 4glp_A Monocyte differentiatio 99.5 7.8E-14 2.7E-18 160.2 13.7 202 1061-1333 90-306 (310)
89 3rfs_A Internalin B, repeat mo 99.5 1.2E-13 4E-18 155.2 13.6 148 1226-1383 86-234 (272)
90 3rfs_A Internalin B, repeat mo 99.5 9.8E-14 3.3E-18 155.9 12.0 90 1226-1322 158-247 (272)
91 1p9a_G Platelet glycoprotein I 99.5 7.9E-13 2.7E-17 149.5 19.3 177 1223-1414 29-207 (290)
92 4ay9_X Follicle-stimulating ho 99.5 8.4E-13 2.9E-17 154.4 20.1 223 1223-1457 28-255 (350)
93 2o6q_A Variable lymphocyte rec 99.5 7.1E-13 2.4E-17 148.8 17.9 158 1223-1383 35-193 (270)
94 2ast_B S-phase kinase-associat 99.4 1.5E-14 5.2E-19 169.0 1.9 244 1062-1383 47-305 (336)
95 2ast_B S-phase kinase-associat 99.4 1.5E-14 5.2E-19 169.0 1.9 157 1225-1382 93-258 (336)
96 4glp_A Monocyte differentiatio 99.4 3.2E-13 1.1E-17 155.1 12.8 82 1227-1308 93-180 (310)
97 2fna_A Conserved hypothetical 99.4 1.6E-12 5.5E-17 153.3 18.6 290 212-545 11-355 (357)
98 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 143.1 15.2 157 1223-1383 33-191 (251)
99 1h6u_A Internalin H; cell adhe 99.4 1.4E-12 4.7E-17 149.2 13.2 191 1059-1332 38-228 (308)
100 1h6t_A Internalin B; cell adhe 99.4 1.7E-12 5.6E-17 147.1 11.7 168 624-868 44-211 (291)
101 3m19_A Variable lymphocyte rec 99.3 7.1E-12 2.4E-16 138.8 15.5 105 1227-1332 85-190 (251)
102 2ca6_A RAN GTPase-activating p 99.3 9.6E-14 3.3E-18 165.3 0.0 246 1057-1357 27-315 (386)
103 4ezg_A Putative uncharacterize 99.3 2.5E-12 8.6E-17 136.4 8.8 101 623-725 41-141 (197)
104 2ca6_A RAN GTPase-activating p 99.3 9.2E-14 3.2E-18 165.5 -3.0 41 1058-1098 90-134 (386)
105 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.3E-16 132.4 13.9 148 1224-1383 27-177 (208)
106 4ezg_A Putative uncharacterize 99.3 8.5E-12 2.9E-16 132.3 12.2 149 1226-1383 45-193 (197)
107 2qby_B CDC6 homolog 3, cell di 99.3 7.5E-11 2.6E-15 140.3 20.4 292 214-529 20-339 (384)
108 1m9s_A Internalin B; cell inva 99.3 5.5E-12 1.9E-16 156.7 10.7 169 623-868 40-208 (605)
109 3cvr_A Invasion plasmid antige 99.3 2.2E-11 7.5E-16 149.3 15.6 72 1063-1146 60-131 (571)
110 3cvr_A Invasion plasmid antige 99.3 1.5E-11 5E-16 150.8 12.8 179 626-871 59-244 (571)
111 3goz_A Leucine-rich repeat-con 99.3 3.8E-13 1.3E-17 158.3 -1.3 60 1225-1284 138-207 (362)
112 3goz_A Leucine-rich repeat-con 99.2 5.7E-13 2E-17 156.7 -0.3 236 1058-1332 18-295 (362)
113 1xeu_A Internalin C; cellular 99.2 4.4E-12 1.5E-16 141.0 5.4 79 624-707 39-117 (263)
114 2v1u_A Cell division control p 99.2 2.3E-10 7.8E-15 136.5 20.3 293 214-529 19-351 (387)
115 1m9s_A Internalin B; cell inva 99.2 1.7E-11 5.7E-16 152.4 8.7 81 1059-1146 40-120 (605)
116 1h6t_A Internalin B; cell adhe 99.2 4.3E-11 1.5E-15 135.4 10.8 81 1059-1146 43-123 (291)
117 2v9t_B SLIT homolog 2 protein 99.2 1.4E-10 4.7E-15 125.0 13.7 108 1224-1332 31-139 (220)
118 2v9t_B SLIT homolog 2 protein 99.2 1.3E-10 4.5E-15 125.2 13.1 150 1228-1383 14-164 (220)
119 3e6j_A Variable lymphocyte rec 99.1 1.4E-10 4.9E-15 125.9 12.8 131 1224-1357 39-171 (229)
120 2qby_A CDC6 homolog 1, cell di 99.1 7.2E-10 2.5E-14 132.1 19.1 296 213-529 19-348 (386)
121 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.9E-15 136.8 11.6 157 1223-1383 37-201 (361)
122 1fnn_A CDC6P, cell division co 99.1 2.3E-09 7.8E-14 127.8 22.9 297 214-530 17-352 (389)
123 3e6j_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 124.0 13.1 149 1227-1383 21-171 (229)
124 1xeu_A Internalin C; cellular 99.1 1.2E-10 4E-15 129.5 10.7 167 624-868 17-183 (263)
125 2o6s_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 121.1 13.4 148 1228-1383 10-160 (208)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 2.7E-10 9.3E-15 122.7 11.9 135 1224-1358 31-166 (220)
127 2v70_A SLIT-2, SLIT homolog 2 99.1 3E-10 1E-14 122.4 11.8 152 1227-1383 13-165 (220)
128 2ell_A Acidic leucine-rich nuc 99.1 4E-10 1.4E-14 115.9 10.4 111 617-730 40-157 (168)
129 2je0_A Acidic leucine-rich nuc 99.0 2.2E-10 7.4E-15 115.2 8.0 107 617-726 33-146 (149)
130 2xot_A Amphoterin-induced prot 99.0 3.7E-10 1.3E-14 132.4 11.0 104 1227-1332 90-200 (361)
131 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.1E-14 126.3 15.1 120 1227-1351 204-327 (329)
132 1njg_A DNA polymerase III subu 99.0 2.6E-09 8.8E-14 118.4 16.2 197 214-426 23-230 (250)
133 2ell_A Acidic leucine-rich nuc 99.0 2.6E-10 9E-15 117.3 6.0 133 1225-1384 24-160 (168)
134 1a9n_A U2A', U2A'; complex (nu 99.0 6.7E-10 2.3E-14 115.1 8.6 107 620-729 35-149 (176)
135 4b8c_D Glucose-repressible alc 99.0 5.6E-10 1.9E-14 142.7 8.1 104 621-726 219-322 (727)
136 2wfh_A SLIT homolog 2 protein 98.9 8.6E-10 3E-14 115.8 7.9 100 626-727 31-133 (193)
137 2chg_A Replication factor C sm 98.9 9E-09 3.1E-13 111.9 15.2 178 214-423 17-203 (226)
138 4b8c_D Glucose-repressible alc 98.9 3.4E-10 1.2E-14 144.7 4.1 166 1227-1412 203-369 (727)
139 2je0_A Acidic leucine-rich nuc 98.9 6E-10 2E-14 111.9 4.9 101 624-727 15-120 (149)
140 3sb4_A Hypothetical leucine ri 98.9 2.1E-08 7.2E-13 115.8 17.6 264 1061-1378 48-328 (329)
141 1dce_A Protein (RAB geranylger 98.9 2.1E-09 7.3E-14 132.7 8.2 95 627-725 442-538 (567)
142 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 8E-14 110.2 7.2 93 626-720 33-128 (174)
143 1a9n_A U2A', U2A'; complex (nu 98.9 1.7E-09 5.8E-14 112.0 6.1 102 621-726 14-119 (176)
144 1w8a_A SLIT protein; signaling 98.8 8.3E-09 2.8E-13 108.4 11.2 82 1226-1307 30-112 (192)
145 1w8a_A SLIT protein; signaling 98.8 6.2E-09 2.1E-13 109.4 9.9 130 1227-1359 10-140 (192)
146 2wfh_A SLIT homolog 2 protein 98.8 8.4E-09 2.9E-13 108.2 10.9 107 1224-1332 30-137 (193)
147 1dce_A Protein (RAB geranylger 98.8 3.9E-09 1.3E-13 130.4 8.9 102 621-725 458-565 (567)
148 2r9u_A Variable lymphocyte rec 98.8 6.3E-09 2.2E-13 107.0 8.1 97 628-728 14-113 (174)
149 1ds9_A Outer arm dynein; leuci 98.8 4.7E-11 1.6E-15 126.6 -8.5 94 628-725 25-120 (198)
150 1sxj_B Activator 1 37 kDa subu 98.8 3E-08 1E-12 114.5 12.8 188 214-426 21-212 (323)
151 3g39_A Variable lymphocyte rec 98.7 1.2E-08 4.2E-13 104.5 8.1 81 626-707 30-113 (170)
152 2o6r_A Variable lymphocyte rec 98.7 2.6E-08 8.8E-13 103.3 10.6 81 1226-1307 29-110 (177)
153 1hqc_A RUVB; extended AAA-ATPa 98.7 1.3E-08 4.3E-13 117.6 9.1 268 214-528 12-324 (324)
154 4fdw_A Leucine rich hypothetic 98.7 6.8E-07 2.3E-11 105.2 22.9 79 1061-1146 112-191 (401)
155 3g39_A Variable lymphocyte rec 98.7 1.7E-08 5.7E-13 103.5 7.7 99 628-730 11-112 (170)
156 2o6r_A Variable lymphocyte rec 98.7 8.1E-08 2.8E-12 99.5 12.0 125 1227-1357 9-136 (177)
157 1ds9_A Outer arm dynein; leuci 98.7 5.7E-10 2E-14 118.2 -4.6 101 621-725 43-145 (198)
158 4fdw_A Leucine rich hypothetic 98.7 1.4E-06 4.9E-11 102.4 23.2 99 1227-1331 250-355 (401)
159 1iqp_A RFCS; clamp loader, ext 98.4 4.2E-07 1.4E-11 105.1 10.6 182 214-424 25-212 (327)
160 4fs7_A Uncharacterized protein 98.4 5.7E-06 2E-10 98.0 20.4 78 1243-1326 314-393 (394)
161 2ifg_A High affinity nerve gro 98.4 1.9E-07 6.4E-12 109.0 6.9 85 622-707 27-114 (347)
162 3te6_A Regulatory protein SIR3 98.4 1.4E-06 4.7E-11 97.0 13.1 207 215-427 21-283 (318)
163 4fs7_A Uncharacterized protein 98.3 1E-05 3.5E-10 95.8 19.3 143 1226-1381 231-376 (394)
164 2chq_A Replication factor C sm 98.3 3.5E-06 1.2E-10 96.8 13.3 180 214-422 17-202 (319)
165 1jr3_A DNA polymerase III subu 98.2 5.2E-06 1.8E-10 97.8 14.0 195 214-424 16-221 (373)
166 2ifg_A High affinity nerve gro 98.2 2.5E-06 8.6E-11 99.3 9.0 82 1226-1308 32-114 (347)
167 1jbk_A CLPB protein; beta barr 98.1 3.5E-06 1.2E-10 88.6 7.4 45 214-264 22-66 (195)
168 3un9_A NLR family member X1; l 98.1 1.8E-07 6.3E-12 108.9 -3.9 159 1225-1383 72-251 (372)
169 1sxj_D Activator 1 41 kDa subu 98.0 1.8E-05 6.1E-10 92.4 11.8 193 214-422 37-233 (353)
170 2ra8_A Uncharacterized protein 98.0 4.7E-06 1.6E-10 95.9 6.2 59 1226-1284 253-318 (362)
171 3bos_A Putative DNA replicatio 98.0 5.6E-06 1.9E-10 90.7 6.0 172 215-423 29-216 (242)
172 3pfi_A Holliday junction ATP-d 98.0 8.4E-05 2.9E-09 85.8 16.2 175 214-421 29-224 (338)
173 4gt6_A Cell surface protein; l 97.9 0.00047 1.6E-08 81.4 22.5 107 1268-1382 260-368 (394)
174 3pvs_A Replication-associated 97.9 8.9E-05 3E-09 87.8 15.1 177 214-421 26-212 (447)
175 3un9_A NLR family member X1; l 97.9 3.5E-07 1.2E-11 106.5 -5.6 38 1061-1098 71-113 (372)
176 4gt6_A Cell surface protein; l 97.9 0.0007 2.4E-08 79.9 22.9 127 1244-1382 260-389 (394)
177 1sxj_A Activator 1 95 kDa subu 97.9 3.8E-05 1.3E-09 93.7 11.7 199 214-426 39-255 (516)
178 2ra8_A Uncharacterized protein 97.8 1E-05 3.6E-10 93.0 4.6 134 1243-1382 166-318 (362)
179 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.00017 5.9E-09 79.7 14.2 182 214-418 6-215 (262)
180 3syl_A Protein CBBX; photosynt 97.8 7.5E-05 2.6E-09 85.0 11.3 159 215-391 32-218 (309)
181 2z4s_A Chromosomal replication 97.8 5.7E-05 2E-09 89.7 10.5 160 241-421 130-303 (440)
182 3h4m_A Proteasome-activating n 97.8 0.00016 5.4E-09 81.2 13.7 184 213-421 16-228 (285)
183 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.6E-10 80.8 3.2 86 1250-1335 62-153 (176)
184 3uk6_A RUVB-like 2; hexameric 97.7 0.0001 3.4E-09 86.4 12.0 196 214-421 44-300 (368)
185 1sxj_E Activator 1 40 kDa subu 97.7 7.2E-05 2.5E-09 87.1 10.5 195 214-423 14-236 (354)
186 1d2n_A N-ethylmaleimide-sensit 97.7 0.00021 7.3E-09 79.3 13.8 170 215-415 34-228 (272)
187 1a5t_A Delta prime, HOLB; zinc 97.6 0.00044 1.5E-08 79.1 15.1 170 220-423 8-204 (334)
188 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.6E-10 79.4 2.5 84 1298-1382 62-150 (176)
189 3eie_A Vacuolar protein sortin 97.6 0.0006 2E-08 77.6 14.9 187 214-424 18-228 (322)
190 3u61_B DNA polymerase accessor 97.5 0.00029 9.8E-09 80.7 11.7 177 214-420 26-212 (324)
191 4h09_A Hypothetical leucine ri 97.5 0.011 3.8E-07 69.1 25.7 79 1059-1144 43-122 (379)
192 3n70_A Transport activator; si 97.5 0.0001 3.5E-09 72.6 6.7 114 215-360 2-116 (145)
193 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0023 7.8E-08 72.5 18.4 188 214-424 12-223 (322)
194 2qp9_X Vacuolar protein sortin 97.5 0.0012 4E-08 76.1 15.9 186 214-423 51-260 (355)
195 3ec2_A DNA replication protein 97.5 0.00014 4.7E-09 75.1 7.2 122 219-360 19-143 (180)
196 4h09_A Hypothetical leucine ri 97.5 0.015 5.2E-07 67.9 25.8 34 1345-1381 310-343 (379)
197 1sxj_C Activator 1 40 kDa subu 97.5 0.00038 1.3E-08 80.1 11.5 174 214-419 25-207 (340)
198 3rw6_A Nuclear RNA export fact 97.5 6E-05 2.1E-09 81.7 4.1 59 624-683 168-231 (267)
199 2p65_A Hypothetical protein PF 97.4 9.8E-05 3.3E-09 76.8 5.4 45 214-264 22-66 (187)
200 3d8b_A Fidgetin-like protein 1 97.4 0.0011 3.6E-08 76.7 14.0 187 214-424 84-295 (357)
201 1l8q_A Chromosomal replication 97.3 0.00041 1.4E-08 79.3 9.5 154 241-418 37-202 (324)
202 2w58_A DNAI, primosome compone 97.3 0.00026 8.7E-09 74.6 6.9 119 221-359 36-158 (202)
203 3b9p_A CG5977-PA, isoform A; A 97.3 0.0046 1.6E-07 69.6 16.9 186 214-423 21-232 (297)
204 2gno_A DNA polymerase III, gam 97.2 0.00078 2.7E-08 75.2 10.2 148 218-390 1-152 (305)
205 2zan_A Vacuolar protein sortin 97.2 0.003 1E-07 75.1 15.1 187 214-423 134-344 (444)
206 3co5_A Putative two-component 97.2 0.00025 8.5E-09 69.6 4.3 47 214-264 4-50 (143)
207 3rw6_A Nuclear RNA export fact 97.1 0.00026 9E-09 76.7 4.8 97 631-729 148-260 (267)
208 3pxg_A Negative regulator of g 97.1 0.00065 2.2E-08 81.5 8.7 147 214-390 180-338 (468)
209 3cf0_A Transitional endoplasmi 97.1 0.0035 1.2E-07 70.4 13.8 181 214-419 15-223 (301)
210 3vfd_A Spastin; ATPase, microt 97.1 0.0035 1.2E-07 73.4 14.2 187 213-423 114-325 (389)
211 4b4t_J 26S protease regulatory 96.9 0.0047 1.6E-07 70.4 12.4 179 214-417 148-354 (405)
212 4fcw_A Chaperone protein CLPB; 96.9 0.0022 7.6E-08 72.8 10.1 122 215-343 18-142 (311)
213 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0051 1.7E-07 79.3 13.9 155 214-389 186-361 (758)
214 1io0_A Tropomodulin; LRR prote 96.8 0.00026 8.9E-09 73.1 1.3 83 624-707 34-134 (185)
215 1qvr_A CLPB protein; coiled co 96.8 0.0026 8.7E-08 82.8 10.9 156 214-389 170-344 (854)
216 3hu3_A Transitional endoplasmi 96.8 0.0027 9.1E-08 75.9 9.7 185 214-423 204-414 (489)
217 1io0_A Tropomodulin; LRR prote 96.7 0.00032 1.1E-08 72.4 1.1 59 1226-1284 37-104 (185)
218 3pxi_A Negative regulator of g 96.7 0.0021 7.2E-08 82.6 9.0 148 214-390 180-338 (758)
219 2c9o_A RUVB-like 1; hexameric 96.7 0.0055 1.9E-07 73.2 12.1 95 323-422 298-408 (456)
220 4b4t_L 26S protease subunit RP 96.7 0.0074 2.5E-07 70.1 12.5 179 214-417 181-387 (437)
221 2kjq_A DNAA-related protein; s 96.6 0.00059 2E-08 67.2 2.2 25 241-265 36-60 (149)
222 4b4t_K 26S protease regulatory 96.6 0.0036 1.2E-07 72.5 9.1 52 213-264 171-229 (428)
223 2bjv_A PSP operon transcriptio 96.6 0.002 6.9E-08 71.0 6.8 47 214-264 6-52 (265)
224 1ojl_A Transcriptional regulat 96.6 0.002 6.9E-08 72.2 6.7 47 214-264 2-48 (304)
225 1ofh_A ATP-dependent HSL prote 96.6 0.0073 2.5E-07 68.4 11.3 51 214-264 15-73 (310)
226 1in4_A RUVB, holliday junction 96.6 0.013 4.4E-07 66.9 13.1 175 214-421 25-220 (334)
227 4b4t_H 26S protease regulatory 96.5 0.0077 2.6E-07 69.5 10.6 179 214-417 209-415 (467)
228 1lv7_A FTSH; alpha/beta domain 96.5 0.0078 2.7E-07 65.9 10.2 157 214-390 12-195 (257)
229 4b4t_M 26S protease regulatory 96.5 0.0055 1.9E-07 71.1 8.9 179 214-417 181-387 (434)
230 2r62_A Cell division protease 96.4 0.0014 4.9E-08 72.4 3.8 51 214-264 11-67 (268)
231 2ce7_A Cell division protein F 96.4 0.013 4.5E-07 69.2 11.9 179 214-417 16-221 (476)
232 3pxi_A Negative regulator of g 96.3 0.0032 1.1E-07 80.9 6.9 155 214-389 491-674 (758)
233 4b4t_I 26S protease regulatory 96.2 0.011 3.8E-07 67.5 9.4 179 214-417 182-388 (437)
234 3m6a_A ATP-dependent protease 96.1 0.0094 3.2E-07 72.6 9.2 52 213-264 80-131 (543)
235 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0033 1.1E-07 68.9 4.6 69 241-331 123-193 (331)
236 2qgz_A Helicase loader, putati 96.1 0.0032 1.1E-07 70.7 4.2 44 219-265 133-176 (308)
237 2r44_A Uncharacterized protein 95.8 0.025 8.7E-07 64.5 10.5 150 215-391 28-199 (331)
238 3cf2_A TER ATPase, transitiona 95.7 0.059 2E-06 67.6 13.6 179 214-417 204-407 (806)
239 2cvh_A DNA repair and recombin 95.6 0.042 1.4E-06 58.3 10.4 84 241-330 20-115 (220)
240 1r6b_X CLPA protein; AAA+, N-t 95.4 0.017 5.9E-07 74.3 7.9 51 214-264 458-511 (758)
241 1qvr_A CLPB protein; coiled co 95.2 0.029 9.8E-07 72.9 8.8 51 214-264 558-611 (854)
242 3rfe_A Platelet glycoprotein I 95.2 0.023 7.7E-07 54.1 5.8 53 629-683 11-66 (130)
243 1ixz_A ATP-dependent metallopr 94.8 0.086 3E-06 57.3 10.0 52 214-265 16-73 (254)
244 2dhr_A FTSH; AAA+ protein, hex 94.6 0.22 7.7E-06 59.1 13.5 175 214-417 31-236 (499)
245 1um8_A ATP-dependent CLP prote 94.6 0.068 2.3E-06 62.1 9.0 23 242-264 73-95 (376)
246 3t15_A Ribulose bisphosphate c 94.5 0.054 1.9E-06 60.2 7.6 26 240-265 35-60 (293)
247 1rz3_A Hypothetical protein rb 94.5 0.037 1.3E-06 57.6 5.7 44 218-264 2-45 (201)
248 3hr8_A Protein RECA; alpha and 94.4 0.073 2.5E-06 60.1 8.3 85 240-331 60-150 (356)
249 2b8t_A Thymidine kinase; deoxy 94.4 0.021 7.1E-07 59.9 3.4 113 241-361 12-127 (223)
250 3io5_A Recombination and repai 94.3 0.11 3.8E-06 56.7 8.9 84 243-331 30-122 (333)
251 2x8a_A Nuclear valosin-contain 94.2 0.15 5.2E-06 55.8 10.2 155 215-390 11-191 (274)
252 1v5w_A DMC1, meiotic recombina 94.1 0.18 6.2E-06 57.3 11.0 51 240-290 121-175 (343)
253 1xp8_A RECA protein, recombina 94.1 0.11 3.6E-06 59.3 8.8 83 241-330 74-162 (366)
254 1ypw_A Transitional endoplasmi 94.0 0.1 3.5E-06 66.7 9.6 157 214-390 204-385 (806)
255 2px0_A Flagellar biosynthesis 94.0 0.1 3.4E-06 57.8 8.1 87 240-329 104-191 (296)
256 1n0w_A DNA repair protein RAD5 94.0 0.094 3.2E-06 56.6 7.9 48 241-288 24-75 (243)
257 1u94_A RECA protein, recombina 93.8 0.077 2.6E-06 60.3 7.1 84 240-330 62-151 (356)
258 2z43_A DNA repair and recombin 93.6 0.098 3.4E-06 59.1 7.4 55 241-296 107-165 (324)
259 3tqc_A Pantothenate kinase; bi 93.6 0.19 6.6E-06 55.8 9.5 45 217-263 70-114 (321)
260 1iy2_A ATP-dependent metallopr 93.4 0.11 3.7E-06 57.4 7.2 52 214-265 40-97 (278)
261 2i1q_A DNA repair and recombin 93.2 0.13 4.4E-06 58.2 7.6 56 240-296 97-166 (322)
262 1odf_A YGR205W, hypothetical 3 93.2 0.32 1.1E-05 53.5 10.5 81 239-319 29-117 (290)
263 2zr9_A Protein RECA, recombina 93.2 0.16 5.4E-06 57.7 8.2 85 240-331 60-150 (349)
264 1jr3_D DNA polymerase III, del 93.1 0.39 1.3E-05 54.8 11.6 156 241-422 18-183 (343)
265 1g5t_A COB(I)alamin adenosyltr 92.7 0.05 1.7E-06 55.0 2.9 50 311-360 110-163 (196)
266 2xxa_A Signal recognition part 92.7 0.34 1.2E-05 56.6 10.3 27 239-265 98-124 (433)
267 3c8u_A Fructokinase; YP_612366 92.5 0.088 3E-06 55.1 4.6 39 222-264 7-45 (208)
268 3ice_A Transcription terminati 92.4 0.13 4.6E-06 57.5 5.8 94 225-329 163-270 (422)
269 3nbx_X ATPase RAVA; AAA+ ATPas 92.1 0.099 3.4E-06 62.3 4.8 43 215-265 23-65 (500)
270 1qhx_A CPT, protein (chloramph 92.0 0.068 2.3E-06 54.3 2.9 23 242-264 4-26 (178)
271 3lw7_A Adenylate kinase relate 92.0 0.074 2.5E-06 54.0 3.2 20 242-261 2-21 (179)
272 1gvn_B Zeta; postsegregational 91.9 0.14 4.8E-06 56.5 5.5 41 222-263 15-55 (287)
273 1sky_E F1-ATPase, F1-ATP synth 91.9 0.24 8.4E-06 57.5 7.6 51 242-293 152-203 (473)
274 1zp6_A Hypothetical protein AT 91.9 0.094 3.2E-06 54.0 3.8 24 241-264 9-32 (191)
275 2w0m_A SSO2452; RECA, SSPF, un 91.7 0.44 1.5E-05 50.8 9.2 23 242-264 24-46 (235)
276 3kb2_A SPBC2 prophage-derived 91.6 0.079 2.7E-06 53.5 2.9 23 242-264 2-24 (173)
277 3vaa_A Shikimate kinase, SK; s 91.6 0.085 2.9E-06 54.8 3.1 24 241-264 25-48 (199)
278 1ly1_A Polynucleotide kinase; 91.4 0.1 3.4E-06 53.2 3.4 22 242-263 3-24 (181)
279 1pzn_A RAD51, DNA repair and r 91.3 0.39 1.3E-05 54.6 8.5 48 240-287 130-181 (349)
280 2ga8_A Hypothetical 39.9 kDa p 91.2 0.2 6.8E-06 55.9 5.7 46 217-264 2-47 (359)
281 1kgd_A CASK, peripheral plasma 91.2 0.094 3.2E-06 53.4 2.9 23 242-264 6-28 (180)
282 3uie_A Adenylyl-sulfate kinase 91.2 0.12 4E-06 53.7 3.7 25 241-265 25-49 (200)
283 3bh0_A DNAB-like replicative h 90.9 0.76 2.6E-05 51.4 10.3 52 240-295 67-118 (315)
284 1vma_A Cell division protein F 90.9 0.5 1.7E-05 52.3 8.6 26 240-265 103-128 (306)
285 2p5t_B PEZT; postsegregational 90.8 0.17 5.8E-06 54.8 4.7 43 221-264 13-55 (253)
286 3trf_A Shikimate kinase, SK; a 90.8 0.11 3.7E-06 53.2 3.0 23 242-264 6-28 (185)
287 1kag_A SKI, shikimate kinase I 90.8 0.099 3.4E-06 52.8 2.6 23 242-264 5-27 (173)
288 1uj2_A Uridine-cytidine kinase 90.7 0.13 4.4E-06 55.7 3.6 26 239-264 20-45 (252)
289 1fx0_B ATP synthase beta chain 90.6 0.75 2.6E-05 53.5 9.9 55 240-295 164-219 (498)
290 4gp7_A Metallophosphoesterase; 90.6 0.14 5E-06 51.4 3.6 23 241-263 9-31 (171)
291 3dm5_A SRP54, signal recogniti 90.5 0.86 2.9E-05 52.8 10.3 25 240-264 99-123 (443)
292 1knq_A Gluconate kinase; ALFA/ 90.5 0.17 5.7E-06 51.2 4.0 24 241-264 8-31 (175)
293 3rfe_A Platelet glycoprotein I 90.5 0.19 6.5E-06 47.6 4.1 53 652-707 11-66 (130)
294 3lda_A DNA repair protein RAD5 90.4 0.55 1.9E-05 54.1 8.7 57 240-297 177-237 (400)
295 2rhm_A Putative kinase; P-loop 90.4 0.16 5.5E-06 52.3 3.9 24 241-264 5-28 (193)
296 1zuh_A Shikimate kinase; alpha 90.4 0.13 4.3E-06 51.7 2.9 25 240-264 6-30 (168)
297 1ex7_A Guanylate kinase; subst 90.4 0.1 3.5E-06 52.8 2.2 21 243-263 3-23 (186)
298 4eun_A Thermoresistant glucoki 90.3 0.13 4.5E-06 53.3 3.1 24 241-264 29-52 (200)
299 1nks_A Adenylate kinase; therm 90.3 0.14 4.9E-06 52.8 3.3 23 242-264 2-24 (194)
300 1pgv_A TMD-1, tropomodulin TMD 90.2 0.081 2.8E-06 53.8 1.3 59 1226-1284 42-109 (197)
301 4a1f_A DNAB helicase, replicat 90.2 0.58 2E-05 52.4 8.3 52 241-296 46-97 (338)
302 2qt1_A Nicotinamide riboside k 90.1 0.17 5.9E-06 52.8 3.9 25 240-264 20-44 (207)
303 3t61_A Gluconokinase; PSI-biol 90.1 0.12 4.1E-06 53.8 2.6 24 241-264 18-41 (202)
304 1uf9_A TT1252 protein; P-loop, 90.0 0.17 5.7E-06 52.7 3.7 25 240-264 7-31 (203)
305 3tau_A Guanylate kinase, GMP k 90.0 0.15 5.3E-06 53.2 3.3 24 241-264 8-31 (208)
306 3hws_A ATP-dependent CLP prote 90.0 0.22 7.5E-06 57.4 4.9 50 215-264 16-74 (363)
307 2bdt_A BH3686; alpha-beta prot 90.0 0.17 5.8E-06 52.0 3.5 22 242-263 3-24 (189)
308 3l0o_A Transcription terminati 89.9 0.13 4.3E-06 57.6 2.6 52 225-282 164-216 (427)
309 1xjc_A MOBB protein homolog; s 89.9 0.15 5.2E-06 50.5 3.0 26 240-265 3-28 (169)
310 3iij_A Coilin-interacting nucl 89.9 0.13 4.4E-06 52.4 2.6 24 241-264 11-34 (180)
311 2ze6_A Isopentenyl transferase 89.8 0.16 5.5E-06 54.9 3.4 23 242-264 2-24 (253)
312 3asz_A Uridine kinase; cytidin 89.8 0.17 5.8E-06 53.1 3.5 25 240-264 5-29 (211)
313 2qor_A Guanylate kinase; phosp 89.7 0.14 4.7E-06 53.4 2.7 25 240-264 11-35 (204)
314 1j8m_F SRP54, signal recogniti 89.7 0.42 1.4E-05 52.8 6.7 25 241-265 98-122 (297)
315 3fwy_A Light-independent proto 89.7 0.18 6.1E-06 56.2 3.7 25 239-263 46-70 (314)
316 1y63_A LMAJ004144AAA protein; 89.7 0.17 5.8E-06 51.7 3.2 24 241-264 10-33 (184)
317 1kht_A Adenylate kinase; phosp 89.6 0.16 5.5E-06 52.2 3.1 23 242-264 4-26 (192)
318 3kl4_A SRP54, signal recogniti 89.6 1 3.6E-05 52.1 10.1 26 240-265 96-121 (433)
319 3tr0_A Guanylate kinase, GMP k 89.5 0.18 6.2E-06 52.6 3.4 23 242-264 8-30 (205)
320 1ukz_A Uridylate kinase; trans 89.5 0.2 6.9E-06 52.1 3.8 25 240-264 14-38 (203)
321 2orw_A Thymidine kinase; TMTK, 89.5 0.03 1E-06 57.2 -2.6 23 242-264 4-26 (184)
322 2jaq_A Deoxyguanosine kinase; 89.5 0.17 5.7E-06 52.8 3.1 22 243-264 2-23 (205)
323 1via_A Shikimate kinase; struc 89.4 0.14 4.8E-06 51.8 2.4 23 242-264 5-27 (175)
324 2ck3_D ATP synthase subunit be 89.4 1.4 4.7E-05 51.1 10.7 65 225-295 142-207 (482)
325 2if2_A Dephospho-COA kinase; a 89.4 0.17 5.8E-06 52.7 3.1 22 242-263 2-23 (204)
326 1ye8_A Protein THEP1, hypothet 89.4 0.19 6.5E-06 50.8 3.3 23 243-265 2-24 (178)
327 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.19 6.5E-06 54.6 3.6 24 241-264 4-27 (260)
328 2ffh_A Protein (FFH); SRP54, s 89.4 0.98 3.3E-05 52.3 9.6 25 241-265 98-122 (425)
329 2hf9_A Probable hydrogenase ni 89.4 0.23 7.7E-06 52.8 4.1 25 240-264 37-61 (226)
330 2j41_A Guanylate kinase; GMP, 89.3 0.18 6.3E-06 52.6 3.3 23 242-264 7-29 (207)
331 1tev_A UMP-CMP kinase; ploop, 89.3 0.19 6.6E-06 51.8 3.4 23 242-264 4-26 (196)
332 2yvu_A Probable adenylyl-sulfa 89.3 0.23 7.9E-06 50.8 4.0 26 240-265 12-37 (186)
333 3a00_A Guanylate kinase, GMP k 89.3 0.15 5.1E-06 52.2 2.5 23 242-264 2-24 (186)
334 3cf2_A TER ATPase, transitiona 89.2 1.3 4.5E-05 55.6 11.3 99 213-331 476-581 (806)
335 1jjv_A Dephospho-COA kinase; P 89.2 0.21 7.1E-06 52.1 3.6 22 242-263 3-24 (206)
336 2c95_A Adenylate kinase 1; tra 89.1 0.19 6.5E-06 51.9 3.2 24 241-264 9-32 (196)
337 1cke_A CK, MSSA, protein (cyti 89.0 0.19 6.5E-06 53.4 3.1 22 242-263 6-27 (227)
338 2iyv_A Shikimate kinase, SK; t 89.0 0.15 5E-06 52.2 2.1 23 242-264 3-25 (184)
339 3ney_A 55 kDa erythrocyte memb 88.9 0.2 6.9E-06 51.1 3.1 25 240-264 18-42 (197)
340 1lvg_A Guanylate kinase, GMP k 88.9 0.17 5.7E-06 52.4 2.5 22 242-263 5-26 (198)
341 3aez_A Pantothenate kinase; tr 88.9 0.24 8.1E-06 55.2 3.9 25 240-264 89-113 (312)
342 2grj_A Dephospho-COA kinase; T 88.8 0.22 7.6E-06 50.9 3.4 24 240-263 11-34 (192)
343 3cm0_A Adenylate kinase; ATP-b 88.8 0.22 7.5E-06 50.9 3.4 22 242-263 5-26 (186)
344 3umf_A Adenylate kinase; rossm 88.8 0.24 8.3E-06 51.6 3.6 26 239-264 27-52 (217)
345 2yhs_A FTSY, cell division pro 88.7 1.2 4.1E-05 52.1 9.7 43 239-284 291-333 (503)
346 1qf9_A UMP/CMP kinase, protein 88.7 0.27 9.2E-06 50.6 4.0 24 241-264 6-29 (194)
347 1htw_A HI0065; nucleotide-bind 88.5 0.26 9E-06 48.5 3.5 24 241-264 33-56 (158)
348 1e6c_A Shikimate kinase; phosp 88.5 0.18 6E-06 50.9 2.4 23 242-264 3-25 (173)
349 2cdn_A Adenylate kinase; phosp 88.5 0.24 8.4E-06 51.3 3.5 24 241-264 20-43 (201)
350 2bbw_A Adenylate kinase 4, AK4 88.5 0.22 7.6E-06 53.6 3.3 23 241-263 27-49 (246)
351 2pt5_A Shikimate kinase, SK; a 88.4 0.23 7.8E-06 49.7 3.1 22 243-264 2-23 (168)
352 2pez_A Bifunctional 3'-phospho 88.4 0.26 8.9E-06 50.0 3.6 24 241-264 5-28 (179)
353 2plr_A DTMP kinase, probable t 88.3 0.26 8.7E-06 51.7 3.6 24 242-265 5-28 (213)
354 2wsm_A Hydrogenase expression/ 88.2 0.35 1.2E-05 51.0 4.6 41 218-264 13-53 (221)
355 1rj9_A FTSY, signal recognitio 88.1 0.26 8.9E-06 54.6 3.5 25 240-264 101-125 (304)
356 2bwj_A Adenylate kinase 5; pho 88.1 0.24 8.1E-06 51.3 3.1 23 242-264 13-35 (199)
357 2jeo_A Uridine-cytidine kinase 88.1 0.29 9.9E-06 52.6 3.9 25 240-264 24-48 (245)
358 2j37_W Signal recognition part 88.0 1.9 6.4E-05 51.2 11.0 26 239-264 99-124 (504)
359 3e70_C DPA, signal recognition 88.0 1.1 3.8E-05 50.0 8.6 26 240-265 128-153 (328)
360 1znw_A Guanylate kinase, GMP k 87.9 0.25 8.5E-06 51.6 3.1 23 242-264 21-43 (207)
361 2pbr_A DTMP kinase, thymidylat 87.8 0.26 8.8E-06 50.8 3.2 22 243-264 2-23 (195)
362 2vli_A Antibiotic resistance p 87.7 0.18 6E-06 51.5 1.7 24 241-264 5-28 (183)
363 2f6r_A COA synthase, bifunctio 87.6 0.32 1.1E-05 53.4 3.9 24 240-263 74-97 (281)
364 4e22_A Cytidylate kinase; P-lo 87.6 0.27 9.4E-06 53.0 3.3 23 241-263 27-49 (252)
365 1ls1_A Signal recognition part 87.6 1.2 4.1E-05 49.1 8.5 25 241-265 98-122 (295)
366 3tlx_A Adenylate kinase 2; str 87.6 0.44 1.5E-05 51.1 4.9 25 240-264 28-52 (243)
367 4akg_A Glutathione S-transfera 87.5 2.2 7.5E-05 61.1 12.9 80 242-331 1268-1347(2695)
368 1z6g_A Guanylate kinase; struc 87.4 0.24 8.4E-06 52.0 2.7 23 242-264 24-46 (218)
369 3upu_A ATP-dependent DNA helic 87.3 0.78 2.7E-05 54.6 7.4 40 219-265 30-69 (459)
370 1nn5_A Similar to deoxythymidy 87.2 0.3 1E-05 51.3 3.3 24 241-264 9-32 (215)
371 1aky_A Adenylate kinase; ATP:A 87.1 0.29 9.9E-06 51.6 3.1 23 242-264 5-27 (220)
372 2wwf_A Thymidilate kinase, put 87.1 0.29 9.8E-06 51.3 3.1 24 241-264 10-33 (212)
373 2f1r_A Molybdopterin-guanine d 87.1 0.19 6.6E-06 50.2 1.6 24 242-265 3-26 (171)
374 1s96_A Guanylate kinase, GMP k 87.1 0.31 1.1E-05 51.0 3.3 24 241-264 16-39 (219)
375 3e1s_A Exodeoxyribonuclease V, 87.1 0.74 2.5E-05 56.1 7.0 105 242-359 205-315 (574)
376 1sq5_A Pantothenate kinase; P- 87.0 0.64 2.2E-05 51.9 6.0 25 240-264 79-103 (308)
377 1m7g_A Adenylylsulfate kinase; 87.0 0.35 1.2E-05 50.6 3.6 24 241-264 25-48 (211)
378 1zd8_A GTP:AMP phosphotransfer 87.0 0.28 9.7E-06 52.0 2.9 24 241-264 7-30 (227)
379 1g41_A Heat shock protein HSLU 86.8 0.48 1.7E-05 55.0 4.9 51 214-264 15-73 (444)
380 1vht_A Dephospho-COA kinase; s 86.7 0.38 1.3E-05 50.7 3.7 23 241-263 4-26 (218)
381 1g8p_A Magnesium-chelatase 38 86.7 0.26 8.9E-06 56.5 2.7 46 214-265 24-69 (350)
382 2z0h_A DTMP kinase, thymidylat 86.6 0.33 1.1E-05 50.1 3.2 22 243-264 2-23 (197)
383 3nwj_A ATSK2; P loop, shikimat 86.6 0.26 9E-06 52.7 2.4 23 242-264 49-71 (250)
384 3jvv_A Twitching mobility prot 86.5 0.17 5.8E-06 57.4 0.9 111 242-363 124-234 (356)
385 1zak_A Adenylate kinase; ATP:A 86.4 0.29 1E-05 51.7 2.7 24 241-264 5-28 (222)
386 1gtv_A TMK, thymidylate kinase 86.4 0.19 6.5E-06 52.8 1.2 22 243-264 2-23 (214)
387 1np6_A Molybdopterin-guanine d 86.4 0.34 1.2E-05 48.5 3.0 25 240-264 5-29 (174)
388 3d3q_A TRNA delta(2)-isopenten 86.4 0.36 1.2E-05 53.8 3.4 23 242-264 8-30 (340)
389 3fb4_A Adenylate kinase; psych 86.4 0.34 1.2E-05 50.9 3.2 22 243-264 2-23 (216)
390 2i3b_A HCR-ntpase, human cance 86.4 0.31 1.1E-05 49.7 2.7 23 243-265 3-25 (189)
391 3b9q_A Chloroplast SRP recepto 86.4 0.4 1.4E-05 53.1 3.8 25 240-264 99-123 (302)
392 3vr4_D V-type sodium ATPase su 86.4 0.78 2.7E-05 52.8 6.2 86 242-329 152-257 (465)
393 2v54_A DTMP kinase, thymidylat 86.1 0.36 1.2E-05 50.1 3.1 23 242-264 5-27 (204)
394 3dl0_A Adenylate kinase; phosp 86.0 0.36 1.2E-05 50.7 3.2 21 243-263 2-22 (216)
395 1zu4_A FTSY; GTPase, signal re 86.0 0.86 2.9E-05 50.8 6.3 27 239-265 103-129 (320)
396 2ged_A SR-beta, signal recogni 86.0 0.58 2E-05 48.0 4.7 25 240-264 47-71 (193)
397 2onk_A Molybdate/tungstate ABC 85.7 0.39 1.4E-05 51.1 3.2 23 242-264 25-47 (240)
398 3a8t_A Adenylate isopentenyltr 85.7 0.49 1.7E-05 52.4 4.0 24 241-264 40-63 (339)
399 4a74_A DNA repair and recombin 85.6 0.43 1.5E-05 50.7 3.5 24 240-263 24-47 (231)
400 3be4_A Adenylate kinase; malar 85.5 0.34 1.1E-05 51.0 2.5 23 242-264 6-28 (217)
401 3mfy_A V-type ATP synthase alp 85.5 1.4 4.7E-05 51.8 7.7 48 241-292 227-275 (588)
402 3r20_A Cytidylate kinase; stru 85.4 0.42 1.4E-05 50.3 3.1 23 242-264 10-32 (233)
403 3p32_A Probable GTPase RV1496/ 85.3 0.81 2.8E-05 52.2 5.8 38 223-264 65-102 (355)
404 3ake_A Cytidylate kinase; CMP 85.3 0.42 1.4E-05 49.8 3.2 21 243-263 4-24 (208)
405 3tif_A Uncharacterized ABC tra 85.3 0.43 1.5E-05 50.7 3.2 23 242-264 32-54 (235)
406 2pcj_A ABC transporter, lipopr 85.2 0.43 1.5E-05 50.3 3.1 23 242-264 31-53 (224)
407 3k1j_A LON protease, ATP-depen 85.1 0.49 1.7E-05 58.5 4.2 44 214-265 41-84 (604)
408 3crm_A TRNA delta(2)-isopenten 85.0 0.46 1.6E-05 52.5 3.4 23 242-264 6-28 (323)
409 3lnc_A Guanylate kinase, GMP k 85.0 0.3 1E-05 52.0 1.9 22 242-263 28-50 (231)
410 3exa_A TRNA delta(2)-isopenten 84.9 0.51 1.7E-05 51.6 3.6 23 242-264 4-26 (322)
411 2ehv_A Hypothetical protein PH 84.9 0.45 1.5E-05 51.3 3.3 23 241-263 30-52 (251)
412 1yrb_A ATP(GTP)binding protein 84.9 0.51 1.7E-05 51.3 3.7 25 240-264 13-37 (262)
413 1tue_A Replication protein E1; 84.7 0.62 2.1E-05 47.3 3.8 37 223-264 45-81 (212)
414 2og2_A Putative signal recogni 84.7 0.52 1.8E-05 53.3 3.8 25 240-264 156-180 (359)
415 2zej_A Dardarin, leucine-rich 84.7 0.45 1.5E-05 48.4 3.0 22 243-264 4-25 (184)
416 2wji_A Ferrous iron transport 84.6 0.59 2E-05 46.5 3.8 23 242-264 4-26 (165)
417 2xb4_A Adenylate kinase; ATP-b 84.5 0.48 1.6E-05 50.0 3.1 22 243-264 2-23 (223)
418 1oix_A RAS-related protein RAB 84.4 0.48 1.6E-05 48.6 3.1 25 241-265 29-53 (191)
419 2cbz_A Multidrug resistance-as 84.4 0.49 1.7E-05 50.3 3.2 23 242-264 32-54 (237)
420 1e4v_A Adenylate kinase; trans 84.4 0.48 1.6E-05 49.7 3.1 22 243-264 2-23 (214)
421 3gfo_A Cobalt import ATP-bindi 84.3 0.49 1.7E-05 51.4 3.2 22 242-263 35-56 (275)
422 1pgv_A TMD-1, tropomodulin TMD 84.3 0.41 1.4E-05 48.7 2.3 82 624-706 39-136 (197)
423 3foz_A TRNA delta(2)-isopenten 84.2 0.62 2.1E-05 50.8 3.9 25 240-264 9-33 (316)
424 3gqb_B V-type ATP synthase bet 84.1 0.96 3.3E-05 52.0 5.5 89 241-329 147-260 (464)
425 3b85_A Phosphate starvation-in 84.1 0.4 1.4E-05 49.8 2.3 23 242-264 23-45 (208)
426 3vr4_A V-type sodium ATPase ca 84.0 1.7 5.8E-05 51.2 7.6 58 225-291 221-279 (600)
427 2dyk_A GTP-binding protein; GT 84.0 0.6 2.1E-05 46.0 3.6 23 242-264 2-24 (161)
428 2vp4_A Deoxynucleoside kinase; 84.0 0.59 2E-05 49.6 3.6 26 239-264 18-43 (230)
429 1mv5_A LMRA, multidrug resista 84.0 0.55 1.9E-05 50.2 3.4 24 241-264 28-51 (243)
430 2r6a_A DNAB helicase, replicat 84.0 2.1 7.3E-05 50.6 8.9 51 241-294 203-253 (454)
431 1b0u_A Histidine permease; ABC 84.0 0.52 1.8E-05 51.0 3.2 24 241-264 32-55 (262)
432 1ak2_A Adenylate kinase isoenz 83.9 0.54 1.9E-05 50.0 3.3 23 242-264 17-39 (233)
433 3bgw_A DNAB-like replicative h 83.8 2.7 9.2E-05 49.3 9.5 51 241-295 197-247 (444)
434 3sr0_A Adenylate kinase; phosp 83.8 0.55 1.9E-05 48.6 3.2 22 243-264 2-23 (206)
435 4edh_A DTMP kinase, thymidylat 83.8 1.8 6.2E-05 44.9 7.2 25 241-265 6-30 (213)
436 1sgw_A Putative ABC transporte 83.8 0.46 1.6E-05 49.5 2.6 23 242-264 36-58 (214)
437 1ji0_A ABC transporter; ATP bi 83.7 0.55 1.9E-05 50.1 3.2 23 242-264 33-55 (240)
438 4g1u_C Hemin import ATP-bindin 83.6 0.54 1.9E-05 50.9 3.2 23 242-264 38-60 (266)
439 3hjn_A DTMP kinase, thymidylat 83.6 1.4 4.7E-05 45.2 6.1 24 243-266 2-25 (197)
440 2olj_A Amino acid ABC transpor 83.6 0.55 1.9E-05 50.7 3.2 23 242-264 51-73 (263)
441 2r9v_A ATP synthase subunit al 83.6 1.3 4.5E-05 51.5 6.4 85 241-329 175-276 (515)
442 3zvl_A Bifunctional polynucleo 83.5 0.59 2E-05 54.6 3.7 26 239-264 256-281 (416)
443 1g6h_A High-affinity branched- 83.5 0.56 1.9E-05 50.6 3.2 23 242-264 34-56 (257)
444 2d2e_A SUFC protein; ABC-ATPas 83.4 0.59 2E-05 50.2 3.3 23 242-264 30-52 (250)
445 2pze_A Cystic fibrosis transme 83.4 0.57 2E-05 49.5 3.2 23 242-264 35-57 (229)
446 2ff7_A Alpha-hemolysin translo 83.4 0.57 2E-05 50.1 3.2 23 242-264 36-58 (247)
447 2qe7_A ATP synthase subunit al 83.2 1.3 4.5E-05 51.5 6.3 85 241-329 162-263 (502)
448 3end_A Light-independent proto 83.2 0.65 2.2E-05 51.9 3.7 27 239-265 39-65 (307)
449 3llm_A ATP-dependent RNA helic 83.2 2.3 7.9E-05 45.1 8.0 90 242-332 77-188 (235)
450 1vpl_A ABC transporter, ATP-bi 83.1 0.59 2E-05 50.3 3.2 23 242-264 42-64 (256)
451 2zu0_C Probable ATP-dependent 83.0 0.61 2.1E-05 50.6 3.3 23 242-264 47-69 (267)
452 1q57_A DNA primase/helicase; d 83.0 2.2 7.5E-05 51.4 8.5 53 241-296 242-294 (503)
453 1ltq_A Polynucleotide kinase; 82.9 0.61 2.1E-05 52.0 3.4 22 242-263 3-24 (301)
454 2ghi_A Transport protein; mult 82.9 0.61 2.1E-05 50.4 3.2 23 242-264 47-69 (260)
455 2ixe_A Antigen peptide transpo 82.9 0.61 2.1E-05 50.7 3.2 23 242-264 46-68 (271)
456 2f9l_A RAB11B, member RAS onco 82.8 0.62 2.1E-05 48.1 3.2 24 241-264 5-28 (199)
457 1a7j_A Phosphoribulokinase; tr 82.8 0.33 1.1E-05 53.5 1.0 24 240-263 4-27 (290)
458 2qi9_C Vitamin B12 import ATP- 82.7 0.63 2.2E-05 49.8 3.2 23 242-264 27-49 (249)
459 2wjg_A FEOB, ferrous iron tran 82.5 0.77 2.7E-05 46.7 3.8 24 241-264 7-30 (188)
460 2qmh_A HPR kinase/phosphorylas 82.5 0.7 2.4E-05 46.6 3.1 23 242-264 35-57 (205)
461 2c61_A A-type ATP synthase non 82.4 1.1 3.8E-05 51.9 5.2 89 241-329 152-258 (469)
462 2ce2_X GTPase HRAS; signaling 82.4 0.64 2.2E-05 46.0 3.0 22 243-264 5-26 (166)
463 2v9p_A Replication protein E1; 82.3 0.66 2.3E-05 51.0 3.2 24 241-264 126-149 (305)
464 2yz2_A Putative ABC transporte 82.3 0.66 2.3E-05 50.3 3.2 23 242-264 34-56 (266)
465 2nq2_C Hypothetical ABC transp 82.2 0.66 2.3E-05 49.8 3.1 23 242-264 32-54 (253)
466 3vkw_A Replicase large subunit 82.2 2.4 8.1E-05 48.9 7.8 27 237-263 157-183 (446)
467 3cmu_A Protein RECA, recombina 82.2 1.4 4.9E-05 60.6 6.9 84 239-329 1425-1514(2050)
468 2ihy_A ABC transporter, ATP-bi 82.1 0.67 2.3E-05 50.6 3.2 23 242-264 48-70 (279)
469 2lkc_A Translation initiation 82.1 0.95 3.3E-05 45.5 4.2 25 240-264 7-31 (178)
470 1q3t_A Cytidylate kinase; nucl 82.1 0.71 2.4E-05 49.2 3.3 25 239-263 14-38 (236)
471 2eyu_A Twitching motility prot 82.1 0.78 2.7E-05 49.5 3.7 23 241-263 25-47 (261)
472 2nzj_A GTP-binding protein REM 81.9 0.72 2.5E-05 46.2 3.2 23 242-264 5-27 (175)
473 3con_A GTPase NRAS; structural 81.8 0.69 2.4E-05 47.2 3.0 23 242-264 22-44 (190)
474 1z2a_A RAS-related protein RAB 81.8 0.85 2.9E-05 45.3 3.7 24 241-264 5-28 (168)
475 4eaq_A DTMP kinase, thymidylat 81.7 0.85 2.9E-05 48.2 3.7 27 240-266 25-51 (229)
476 2q6t_A DNAB replication FORK h 81.7 3 0.0001 49.1 8.9 54 240-296 199-252 (444)
477 2v3c_C SRP54, signal recogniti 81.6 0.8 2.7E-05 53.4 3.7 26 240-265 98-123 (432)
478 3thx_A DNA mismatch repair pro 81.6 2.9 0.0001 53.6 9.2 21 241-261 662-682 (934)
479 2ocp_A DGK, deoxyguanosine kin 81.4 0.81 2.8E-05 48.9 3.5 24 241-264 2-25 (241)
480 3sop_A Neuronal-specific septi 81.4 0.71 2.4E-05 50.1 3.1 22 243-264 4-25 (270)
481 1fx0_A ATP synthase alpha chai 81.3 1.4 4.7E-05 51.5 5.4 83 241-329 163-264 (507)
482 1svi_A GTP-binding protein YSX 81.0 0.94 3.2E-05 46.4 3.7 25 240-264 22-46 (195)
483 3q72_A GTP-binding protein RAD 80.9 0.76 2.6E-05 45.6 2.9 22 243-264 4-25 (166)
484 3ld9_A DTMP kinase, thymidylat 80.8 1.6 5.4E-05 45.5 5.3 27 240-266 20-46 (223)
485 1svm_A Large T antigen; AAA+ f 80.8 0.79 2.7E-05 52.2 3.3 24 240-263 168-191 (377)
486 1u8z_A RAS-related protein RAL 80.8 0.81 2.8E-05 45.4 3.1 23 242-264 5-27 (168)
487 3nh6_A ATP-binding cassette SU 80.7 0.65 2.2E-05 51.3 2.4 24 241-264 80-103 (306)
488 1cr0_A DNA primase/helicase; R 80.7 0.8 2.7E-05 50.8 3.3 25 241-265 35-59 (296)
489 1z08_A RAS-related protein RAB 80.7 0.97 3.3E-05 45.0 3.6 23 242-264 7-29 (170)
490 1nlf_A Regulatory protein REPA 80.7 0.81 2.8E-05 50.2 3.3 22 242-263 31-52 (279)
491 2pjz_A Hypothetical protein ST 80.5 0.83 2.9E-05 49.3 3.2 23 242-264 31-53 (263)
492 1m7b_A RND3/RHOE small GTP-bin 80.5 0.8 2.8E-05 46.5 3.0 24 241-264 7-30 (184)
493 3gqb_A V-type ATP synthase alp 80.5 1.6 5.5E-05 51.2 5.6 38 241-282 221-258 (578)
494 2erx_A GTP-binding protein DI- 80.4 0.85 2.9E-05 45.5 3.1 23 242-264 4-26 (172)
495 3ihw_A Centg3; RAS, centaurin, 80.4 0.83 2.8E-05 46.4 3.0 23 242-264 21-43 (184)
496 2gj8_A MNME, tRNA modification 80.4 1 3.4E-05 45.2 3.6 23 242-264 5-27 (172)
497 1c1y_A RAS-related protein RAP 80.3 0.94 3.2E-05 44.9 3.4 22 243-264 5-26 (167)
498 3eph_A TRNA isopentenyltransfe 80.2 0.87 3E-05 51.7 3.3 23 242-264 3-25 (409)
499 1cp2_A CP2, nitrogenase iron p 80.2 0.92 3.1E-05 49.5 3.5 24 242-265 2-25 (269)
500 2dr3_A UPF0273 protein PH0284; 80.1 1 3.5E-05 48.3 3.8 39 241-281 23-61 (247)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-47 Score=495.94 Aligned_cols=649 Identities=17% Similarity=0.083 Sum_probs=311.3
Q ss_pred cccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCccc-ccCh--hhhccccccEeccccccccccccccc-c
Q 042986 618 ILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIK-TLPE--SINKLYNLHTFLLEGCWRLKKLCADM-G 693 (1485)
Q Consensus 618 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~-~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 693 (1485)
+++.+.++++|++++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 455556667777777777666666667777777777777777766 4555 67777777777777765444455544 6
Q ss_pred CccccceeeccCCCCccccccc---ccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhcc
Q 042986 694 NLIKLHHLKNSDTDSLEEMPLG---IGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQL 770 (1485)
Q Consensus 694 ~L~~L~~L~l~~~~~l~~~p~~---i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 770 (1485)
++++|++|++++|......|.. ++++++|++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L--------------------------------------------- 183 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL--------------------------------------------- 183 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE---------------------------------------------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE---------------------------------------------
Confidence 6777777777766622222222 3333333333
Q ss_pred CCCCCCceEEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCC
Q 042986 771 DGKKNLKVLMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSV 850 (1485)
Q Consensus 771 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 850 (1485)
+++.+... ....+..+++|+.|+++++.....+..+. .+++|++|++++|.+.+.+
T Consensus 184 ---------~Ls~n~l~-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 184 ---------AISGNKIS-------------GDVDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp ---------ECCSSEEE-------------SCCBCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCH
T ss_pred ---------ECCCCccc-------------ccCCcccCCcCCEEECcCCcCCCCCcccc--cCCCCCEEECcCCcCCCcc
Confidence 22111100 00011334445555554444333222222 2444555555554444433
Q ss_pred C-CCCCCCCCceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCCc
Q 042986 851 P-SVGQLPSLKHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKL 929 (1485)
Q Consensus 851 ~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 929 (1485)
| .++.+++|++|++++|.....++ ...+++|++|++++| ++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~-------------------------------------~~~l~~L~~L~L~~n-~l 281 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIP-------------------------------------PLPLKSLQYLSLAEN-KF 281 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCC-------------------------------------CCCCTTCCEEECCSS-EE
T ss_pred cHHHhcCCCCCEEECCCCcccCccC-------------------------------------ccccCCCCEEECcCC-cc
Confidence 3 34444445555444443221111 014555555555553 44
Q ss_pred cCCCCCCC----CCccEEEEeccc---ccccccCCCCcceEEEEecCCCc-e-ee-ccCccccccccccccccccCC--C
Q 042986 930 QGTLPTHL----PLLDILVVQNCE---ELLVSVASLPALCKLRIDRCKKV-V-WR-STTDCGSQLYKDISNQMFLGG--P 997 (1485)
Q Consensus 930 ~~~lp~~l----~~L~~L~l~~~~---~l~~~~~~l~~L~~L~l~~~~~~-~-~~-~~~~l~~L~~l~ls~n~~~~~--~ 997 (1485)
++.+|..+ ++|+.|++.+|. .++..+..+++|++|++++|... . +. .+..+++|+++++++|.+.+. .
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 44444322 444444444442 22234455566666666665532 1 11 245556666666666655422 2
Q ss_pred cccCCC-CCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccc
Q 042986 998 LKLHLP-KLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLV 1076 (1485)
Q Consensus 998 ~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~ 1076 (1485)
.+..++ +|+.|++++|.....++.. .....+++|++|++++|.+.+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~---------------------------------~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPN---------------------------------LCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTT---------------------------------TTCSTTCCCCEEECCSSEEEE
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChh---------------------------------hhhcccCCccEEECCCCcccc
Confidence 223333 5666666554322211110 011124567777777776666
Q ss_pred cccccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccC-C
Q 042986 1077 KLPKSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAG-V 1154 (1485)
Q Consensus 1077 ~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~ 1154 (1485)
.+|..+.++++|++|++++|.....+|..+ .+++|+.|++++|.....+|.. +..+++|++|++++|.....++. .
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCceEEEecCCcccCcCCHHH
Confidence 666667777777777777765544444322 2456666666666665555554 24566666666666652221110 0
Q ss_pred CCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEec
Q 042986 1155 QLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWH 1234 (1485)
Q Consensus 1155 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~ 1234 (1485)
..+++|+.|++++ |.+.+.+|.. ++.++ +|++|++++
T Consensus 487 ~~l~~L~~L~L~~-----------------------------------------N~l~~~~p~~-~~~l~-~L~~L~L~~ 523 (768)
T 3rgz_A 487 SNCTNLNWISLSN-----------------------------------------NRLTGEIPKW-IGRLE-NLAILKLSN 523 (768)
T ss_dssp GGCTTCCEEECCS-----------------------------------------SCCCSCCCGG-GGGCT-TCCEEECCS
T ss_pred hcCCCCCEEEccC-----------------------------------------CccCCcCChH-HhcCC-CCCEEECCC
Confidence 1111122222111 1112222211 12222 355555655
Q ss_pred cCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCc----------------------ccCCC
Q 042986 1235 CSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLV----------------------SFPEG 1292 (1485)
Q Consensus 1235 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~----------------------~~p~~ 1292 (1485)
|...+.+|..+..+++|+.|++++|.+.+.+|..+.....+..+++..+.... ..+..
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 55555555555555666666666655555555554444333332222110000 00001
Q ss_pred CcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCcccc
Q 042986 1293 GLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTS 1372 (1485)
Q Consensus 1293 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 1372 (1485)
+..++.+..+++..+..-..+|..+..+++|+.|++++|.....+|......++|+.|++++|.....+|. .++++++
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~ 681 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EVGDLRG 681 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTT
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--HHhCCCC
Confidence 11112222223333322333445555666666666666655445554444445666666666665555554 3566666
Q ss_pred ccceeecccccccccccccccccccCCCCCccceeecccCCCCccccccccCCCCCeEeecCCCCCCCCCCCCCCCccce
Q 042986 1373 LRRLAISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSSICDQNLTSLKLKNCPKLKYFPKKGLPASLLR 1452 (1485)
Q Consensus 1373 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~sL~~ 1452 (1485)
|++|+|++|... +.+|..+ ..+++|+.|++++|+--..+|..+...++..
T Consensus 682 L~~LdLs~N~l~-------------g~ip~~l-----------------~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 682 LNILDLSSNKLD-------------GRIPQAM-----------------SALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp CCEEECCSSCCE-------------ECCCGGG-----------------GGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred CCEEECCCCccc-------------CcCChHH-----------------hCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 666666666532 1122211 1235677777776654445666666666666
Q ss_pred eeccCCcchH----HhhccCCCCcccccccccceE
Q 042986 1453 LEIEKCPLIA----KRCRQDRGQYWHLLIHVPCIL 1483 (1485)
Q Consensus 1453 L~i~~C~~L~----~~~~~~~~~~~~~i~~i~~~~ 1483 (1485)
+.+.+||.|. ..|....+.+|++|+|+|.++
T Consensus 732 ~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 732 AKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGCSCTEEESTTSCCCCSCC--------------
T ss_pred HHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 6666665431 268999999999999999875
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.1e-47 Score=468.34 Aligned_cols=315 Identities=19% Similarity=0.249 Sum_probs=259.3
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc--ccccccccCeeEEEEEcCcc--CHHHHHHHH
Q 042986 217 YGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN--DKQVQYYFDLKAWTCVSDDF--DVIWLTTII 292 (1485)
Q Consensus 217 vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i 292 (1485)
|||++++++|.++|... .+...+||+|+||||+||||||++||+ +.+++.+|+.++||++++.+ ++..+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 69999999999999654 234679999999999999999999998 67899999999999999985 899999999
Q ss_pred HHhhcCCCC-------CCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhh
Q 042986 293 LRSITKQTI-------DNSDLNLLQEELKKQLSRK-KFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAA 364 (1485)
Q Consensus 293 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 364 (1485)
+.+++.... +..+.+.++..+++.|+++ ||||||||||+.....|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2235667889999999996 9999999999864333432 26999999999999998
Q ss_pred hcCC-cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHHhhcc
Q 042986 365 IMGT-VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGVLSSK 443 (1485)
Q Consensus 365 ~~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 443 (1485)
.+++ ..+|+|++|+.++||+||.++||+.. .++.+++++++|+++|+|+||||+++|+.|+.+ . ..|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 36799999999999999999998653 246788999999999999999999999999876 3 3344444443
Q ss_pred ccCCCcccccchhHHHhccccCChhhHhhhc-----------cccccCCCcccChHHHHHHHHHc--CCCCCCCCCCChh
Q 042986 444 IWDLPEERCDIIPALRVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIVLLWCAS--GFLDHEENENPSE 510 (1485)
Q Consensus 444 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~e 510 (1485)
.+... ...+.+++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+.......+.+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 33221 347999999999999999999999 999999999999 8999999 9998765466788
Q ss_pred hHHHHHHHHHHhcccccccCC-CCCcEEEechHHHHHHHhccccE
Q 042986 511 DLGHDFFKELHSRSFFQQSSN-NTSRFVMHDLINDLAQWAAGEIY 554 (1485)
Q Consensus 511 ~~~~~~~~~L~~~sl~~~~~~-~~~~~~mHdlv~~~a~~~~~~~~ 554 (1485)
++++ ||++|+++||+++... ...+|+|||+||++|++++.+++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 8888 9999999999998653 45689999999999999987654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.4e-44 Score=464.06 Aligned_cols=586 Identities=16% Similarity=0.119 Sum_probs=388.6
Q ss_pred cccccccCCcccEEEecCCCCC-CCCC--ccCCCCcccEEeccCCccc-ccChhh-hccccccEecccccccccccccc-
Q 042986 618 ILPKLFKLQRLRVFSLRGYHNP-ELPD--SIGNLRNLRYLNLSGTNIK-TLPESI-NKLYNLHTFLLEGCWRLKKLCAD- 691 (1485)
Q Consensus 618 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~Lr~L~Ls~~~i~-~lP~~i-~~L~~L~~L~L~~~~~l~~lp~~- 691 (1485)
.+..+.++++|++|+|++|.+. .+|. .|+++++|++|+|++|.+. ..|..+ .++++|++|++++|......|..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 4456779999999999999976 4677 8999999999999999987 556655 89999999999999655555655
Q ss_pred --ccCccccceeeccCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhc
Q 042986 692 --MGNLIKLHHLKNSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQ 769 (1485)
Q Consensus 692 --i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 769 (1485)
+.++++|++|++++|......| ++.+++|++|+..... +..
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~------------------------l~~----------- 214 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN------------------------FST----------- 214 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSC------------------------CCS-----------
T ss_pred hhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCc------------------------CCC-----------
Confidence 7899999999999998333333 3667777766221110 000
Q ss_pred cCCCCCCceEEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCc-ccCcCCCccccCCeeEEEEecCCCCC
Q 042986 770 LDGKKNLKVLMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGT-KFPTWLGCSFFSNLVTLKFQDCSMCT 848 (1485)
Q Consensus 770 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~ 848 (1485)
....+..+++|+.|+++++... .+|.++. .+++|+.|++++|.+.+
T Consensus 215 -------------------------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 215 -------------------------------GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVG 261 (768)
T ss_dssp -------------------------------CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEE
T ss_pred -------------------------------CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccC
Confidence 0011344556666666666554 3454444 36777777777777766
Q ss_pred CCCCCCCCCCCceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCC
Q 042986 849 SVPSVGQLPSLKHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSK 928 (1485)
Q Consensus 849 ~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 928 (1485)
.+|.. .+++|++|++++|.....++..+.. .+++|+.|.+.++.... .. +..++.+++|++|++++| .
T Consensus 262 ~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~~-~~----p~~~~~l~~L~~L~L~~n-~ 329 (768)
T 3rgz_A 262 PIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFYG-AV----PPFFGSCSLLESLALSSN-N 329 (768)
T ss_dssp SCCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEEE-CC----CGGGGGCTTCCEEECCSS-E
T ss_pred ccCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcCCC-cc----chHHhcCCCccEEECCCC-c
Confidence 66654 6777777777766533333322211 13566666666543211 11 224556677777777773 4
Q ss_pred ccCCCCCCCCCccEEEEecccccccccCCCCcceEEEEecCCC--ceeeccCccc-cccccccccccccCC--CcccC--
Q 042986 929 LQGTLPTHLPLLDILVVQNCEELLVSVASLPALCKLRIDRCKK--VVWRSTTDCG-SQLYKDISNQMFLGG--PLKLH-- 1001 (1485)
Q Consensus 929 l~~~lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~-~L~~l~ls~n~~~~~--~~~~~-- 1001 (1485)
+.+.+|. ..+..+++|++|++++|.. ..+..+..+. +|+.+++++|.+.+. ..+..
T Consensus 330 l~~~ip~-----------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 330 FSGELPM-----------------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp EEEECCH-----------------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred ccCcCCH-----------------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 5444542 1134455555555555542 2233344454 677777777776543 22222
Q ss_pred CCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCcccccccc
Q 042986 1002 LPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKS 1081 (1485)
Q Consensus 1002 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~ 1081 (1485)
+++|+.|++++|.....++. .+..+++|+.|++++|.+.+.+|..
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~-----------------------------------~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPP-----------------------------------TLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp TCCCCEEECCSSEEEEECCG-----------------------------------GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cCCccEEECCCCccccccCH-----------------------------------HHhcCCCCCEEECcCCcccCcccHH
Confidence 67788888887654332221 3566778888888888888888888
Q ss_pred ccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccC-CCCCCC
Q 042986 1082 LLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAG-VQLPPS 1159 (1485)
Q Consensus 1082 l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~ 1159 (1485)
+..+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. +.++++|++|++++|.....++. ....++
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 8888888888888887766666533 3578888888888877777765 46788888888888874433332 122334
Q ss_pred CceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcc
Q 042986 1160 LKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLE 1239 (1485)
Q Consensus 1160 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~ 1239 (1485)
|+.|++++|. +.+.+|.. ++.++ +|+.|++++|...+
T Consensus 516 L~~L~L~~N~-----------------------------------------l~~~~p~~-l~~l~-~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 516 LAILKLSNNS-----------------------------------------FSGNIPAE-LGDCR-SLIWLDLNTNLFNG 552 (768)
T ss_dssp CCEEECCSSC-----------------------------------------CEEECCGG-GGGCT-TCCEEECCSSEEES
T ss_pred CCEEECCCCc-----------------------------------------ccCcCCHH-HcCCC-CCCEEECCCCccCC
Confidence 4444444433 22222222 23343 59999999999998
Q ss_pred hHHhhcccCCCccEEEeecCC----------------------CccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcc
Q 042986 1240 SIVERLDNNTSLEVIEIVSCE----------------------NLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSA 1297 (1485)
Q Consensus 1240 ~~~~~~~~l~~L~~L~L~~~~----------------------~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~ 1297 (1485)
.+|..+..+..+..+++..+. ..+..+..+..++.+..+++..+.....+|..+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 999888777666554433211 1122233344555666666666655566777788888
Q ss_pred ccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCcccccccee
Q 042986 1298 KLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 1377 (1485)
+|+.|++++|...+.+|..+.++++|+.|++++|.....+|......++|++|++++|.....+|. .+..+++|++|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEID 710 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGGGCCCCSEEE
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEE
Confidence 888899988877778888888888899999988877777777666678899999999888777776 578899999999
Q ss_pred ecccccc
Q 042986 1378 ISGCDER 1384 (1485)
Q Consensus 1378 l~~n~~~ 1384 (1485)
+++|+..
T Consensus 711 ls~N~l~ 717 (768)
T 3rgz_A 711 LSNNNLS 717 (768)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 9999753
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-36 Score=389.96 Aligned_cols=301 Identities=15% Similarity=0.067 Sum_probs=140.9
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCcc-----ccC-----CCCCCCCCCEEEEecCCCCCcCc
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLV-----SFP-----DAVLPSQLRVISIWDCGALKFLP 1126 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~ 1126 (1485)
.+..+++|++|++++|.+.+..|..+.++++|+.|++++|.... .+| ....+++|++|++++|......+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 34556777777777777777677777777778888777653322 122 12234677777777777555444
Q ss_pred cccccCCCCCccEEEEecCCC-CccccCCCC----CCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCC
Q 042986 1127 DAWMLDNNSSLEILDIRHCHS-LTYVAGVQL----PPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPS 1201 (1485)
Q Consensus 1127 ~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~----~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~ 1201 (1485)
.. +.++++|++|++++|.. +..++...+ .++|+.|++++|. +..+... .+.++++
T Consensus 347 ~~--~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~-----------------~~~~l~~ 406 (680)
T 1ziw_A 347 NM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESD-----------------AFSWLGH 406 (680)
T ss_dssp TT--TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTT-----------------TTTTCTT
T ss_pred hH--hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChh-----------------hhhCCCC
Confidence 33 46677777777777642 222221111 1345555555443 1111000 0111222
Q ss_pred cccc-cccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCc--cccCcCCCCCCCcCEE
Q 042986 1202 LTCL-ISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENL--KILPHGLHKLWRLQEI 1278 (1485)
Q Consensus 1202 L~~l-~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~l~~~l~~l~~L~~L 1278 (1485)
|+.+ ++.|.+.+.++...+..++ +|++|++++|......+..+..+++|+.|++++|... +.+|..+..+++|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 2222 2223333333322233333 2555555555444444444555555555555554433 3344445555555555
Q ss_pred EeeCCCCCcccCCCCcCccccceEEEccccCccccc---------cCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcc
Q 042986 1279 DIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALP---------LGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLH 1348 (1485)
Q Consensus 1279 ~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~---------~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~ 1348 (1485)
++++|......+..+..+++|++|++++|. ++.++ ..+.++++|+.|++++|.. ..+|.. ....++|+
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELK 563 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC-CCCCHHHcccccCcc
Confidence 555553222222234444555555555533 22211 1134445555555554422 233322 12234555
Q ss_pred eEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1349 SLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1349 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
+|++++|... .++. ..|.++++|++|++++|.
T Consensus 564 ~L~Ls~N~l~-~l~~-~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 564 IIDLGLNNLN-TLPA-SVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp EEECCSSCCC-CCCT-TTTTTCTTCCEEECTTSC
T ss_pred eeECCCCCCC-cCCH-hHhCCCCCCCEEECCCCc
Confidence 5555444432 2222 234455555555555554
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.1e-38 Score=386.93 Aligned_cols=285 Identities=20% Similarity=0.257 Sum_probs=231.6
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCe-eEEEEEcCccCHHHHHHHHHH
Q 042986 216 VYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDL-KAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 216 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~il~ 294 (1485)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997531 3689999999999999999999998888999986 899999999998888888877
Q ss_pred hhcCCC---C---C-----CCCHHHHHHHHHHHh---CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch
Q 042986 295 SITKQT---I---D-----NSDLNLLQEELKKQL---SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 295 ~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
.+.... . + ..+.+.+...+++.+ .+||+||||||||+. ..|+.+ .+|||||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccCh
Confidence 543211 1 0 123455667777766 789999999999984 566653 2699999999999
Q ss_pred hhhhhcCCcCceeCC------CCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCC-Ch
Q 042986 361 EVAAIMGTVPAYQLK------NLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKY-SQ 433 (1485)
Q Consensus 361 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~-~~ 433 (1485)
.++..+.....|+++ +|+.+|||+||+++ ++.. .+++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998755444467777 99999999999998 3322 12333444 9999999999999999885 57
Q ss_pred hHHHHHhhccccCCCcccccchhHHHhccccCChhh-HhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhhH
Q 042986 434 CEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSEDL 512 (1485)
Q Consensus 434 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~ 512 (1485)
+.|+.. ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 788763 12479999999999999999 99999999999999999999999999887 245
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEechHHHHHH
Q 042986 513 GHDFFKELHSRSFFQQSSNNTSRFVMHDLINDLAQ 547 (1485)
Q Consensus 513 ~~~~~~~L~~~sl~~~~~~~~~~~~mHdlv~~~a~ 547 (1485)
++.++++|+++||++.. ....+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 88999999999999984 34568999999998653
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-36 Score=392.46 Aligned_cols=567 Identities=17% Similarity=0.121 Sum_probs=361.2
Q ss_pred CcccEEEecCCCCCCCCC-ccCCCCcccEEeccCCccccc-ChhhhccccccEeccccccccccccc-cccCccccceee
Q 042986 626 QRLRVFSLRGYHNPELPD-SIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCA-DMGNLIKLHHLK 702 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 702 (1485)
+.|++|+|++|.++.+|. .|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 678899999998888874 588899999999999988866 677888999999999988 5667776 488899999999
Q ss_pred ccCCCCccccc-ccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEE
Q 042986 703 NSDTDSLEEMP-LGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLML 781 (1485)
Q Consensus 703 l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 781 (1485)
+++|. +..+| ..++++++|++|+..... +..
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~----------------------- 135 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNG------------------------LSS----------------------- 135 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSC------------------------CSC-----------------------
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCc------------------------ccc-----------------------
Confidence 98887 56665 457777777777221110 000
Q ss_pred EeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcC-CCccccCCeeEEEEecCCCCCCCC-CCCCCCCC
Q 042986 782 QWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTW-LGCSFFSNLVTLKFQDCSMCTSVP-SVGQLPSL 859 (1485)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 859 (1485)
..+..+..+++|+.|+++++....++.. +....+++|+.|++++|.+.+..| .++.+++|
T Consensus 136 ------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 136 ------------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp ------------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred ------------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 0011233445666666666655544321 111124677777777777766555 46667777
Q ss_pred ceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCCccCCCCCCCCC
Q 042986 860 KHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLPL 939 (1485)
Q Consensus 860 ~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~ 939 (1485)
+.|.+.++.........+. .....++|+.|++++| .+.+..|..+..
T Consensus 198 ~~L~l~~~~l~~~~~~~~~--------------------------------~~l~~~~L~~L~L~~n-~l~~~~~~~~~~ 244 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLC--------------------------------LELANTSIRNLSLSNS-QLSTTSNTTFLG 244 (680)
T ss_dssp CEEECTTCCCHHHHHHHHH--------------------------------HHHTTSCCCEEECTTS-CCCEECTTTTGG
T ss_pred hhhhccccccChhhHHHHH--------------------------------HHhhhccccEEEccCC-cccccChhHhhc
Confidence 7777665432111000000 0011345556666553 444333322211
Q ss_pred ccEEEEecccccccccCCCCcceEEEEecCCCce--eeccCccccccccccccccccCC--CcccCCCCCceEEeccCCC
Q 042986 940 LDILVVQNCEELLVSVASLPALCKLRIDRCKKVV--WRSTTDCGSQLYKDISNQMFLGG--PLKLHLPKLEELDISIIDE 1015 (1485)
Q Consensus 940 L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~l~ls~n~~~~~--~~~~~l~~L~~L~l~~~~~ 1015 (1485)
+ ..++|++|++++|.... ...+..+++|+.+++++|.+... ..+..+++|+.|+++++..
T Consensus 245 l----------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 245 L----------------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp G----------------GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred c----------------CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 0 00123344444333211 12244455555555555555443 3456677777777775422
Q ss_pred ccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccccccCCCCcceEeecc
Q 042986 1016 LTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHN 1095 (1485)
Q Consensus 1016 l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~ 1095 (1485)
-..+. ...+|.. ....+..+++|++|++++|.+.+..+..+.++++|++|++++
T Consensus 309 ~~~~~-----------------~~~lp~i---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 309 KQSIS-----------------LASLPKI---------DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CC-----------------------CCEE---------CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred hcccc-----------------ccccccc---------ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 11110 0011110 112466788999999999999888888899999999999999
Q ss_pred CCC-ccccCCCCC----CCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCcccc--CCCCCCCCceEEEecC
Q 042986 1096 CSS-LVSFPDAVL----PSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVA--GVQLPPSLKQLEIYSC 1168 (1485)
Q Consensus 1096 ~~~-l~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~ 1168 (1485)
|.. ...++...+ .++|+.|++++|......+.. +..+++|+.|++++|.....++ .....++|+.|++++|
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh--hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 863 233443322 268999999999977766655 4789999999999987433332 1233445666655554
Q ss_pred CCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCc--chHHhhcc
Q 042986 1169 DNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRL--ESIVERLD 1246 (1485)
Q Consensus 1169 ~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~~~ 1246 (1485)
. +.. ++...+..+| +|++|++++|... +.+|..+.
T Consensus 441 ~-l~~-----------------------------------------~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 441 K-YLQ-----------------------------------------LTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp S-EEE-----------------------------------------CCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTT
T ss_pred C-cce-----------------------------------------eChhhhhcCc-ccccchhccccccccccCCcccc
Confidence 3 110 0111122333 4889999888754 45678889
Q ss_pred cCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCccc----C----CCCcCccccceEEEccccCcccccc-CC
Q 042986 1247 NNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSF----P----EGGLLSAKLKRLVIGGCKKLEALPL-GM 1317 (1485)
Q Consensus 1247 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~----p----~~~~~~~~L~~L~l~~c~~l~~l~~-~~ 1317 (1485)
.+++|+.|++++|.+.+..+..+.++++|++|++++|...... | ..+..+++|++|++++| .++.+|. .+
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHc
Confidence 9999999999999888777777899999999999999644321 1 12567889999999996 4567765 57
Q ss_pred CCCCccCEEEeeCCCCCccccCCC-CCCCCcceEEeCCCCCCccccccCcCC-ccccccceeeccccc
Q 042986 1318 HHLTCLQHLTIGGVPSLLCFTEDG-MFPTNLHSLEIDGMKIWKSLTESGGFH-RLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1318 ~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~ 1383 (1485)
.++++|+.|++++|. +..++... ...++|+.|++++|.... ++. ..+. .+++|++|++++|+.
T Consensus 557 ~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 557 KDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITS-VEK-KVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCB-CCH-HHHHHHHTTCSEEECTTCCC
T ss_pred ccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCc-cCh-hHhcccccccCEEEccCCCc
Confidence 899999999998864 44565543 345899999999996644 333 2344 688999999999874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.9e-35 Score=372.61 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=94.5
Q ss_pred cccEEEEeccCCcchHHh-hcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcc-cC--CCCcCccccce
Q 042986 1226 ALKFLSIWHCSRLESIVE-RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVS-FP--EGGLLSAKLKR 1301 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~-~p--~~~~~~~~L~~ 1301 (1485)
+|++|++++|......+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|+.... ++ ..+..+++|++
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 366666666655444332 356667777777777666666666666677777777777654331 22 23555667777
Q ss_pred EEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1302 LVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1302 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
|++++|......|..+.++++|+.|++++|......+......++| .|++++|......+. .+..+++|++|++++|
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS--LLPILSQQRTINLRQN 557 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG--GHHHHHTSSEEECTTC
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh--hcccCCCCCEEeCCCC
Confidence 7777765444445666667777777777665544444433344666 777777766543333 4667777888888887
Q ss_pred cc
Q 042986 1382 DE 1383 (1485)
Q Consensus 1382 ~~ 1383 (1485)
+.
T Consensus 558 ~~ 559 (606)
T 3t6q_A 558 PL 559 (606)
T ss_dssp CE
T ss_pred Cc
Confidence 64
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-34 Score=369.57 Aligned_cols=510 Identities=13% Similarity=0.095 Sum_probs=282.7
Q ss_pred cccEEEecCCCCCCC-CCccCCCCcccEEeccCCccccc-ChhhhccccccEeccccccccccccccccCccccceeecc
Q 042986 627 RLRVFSLRGYHNPEL-PDSIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNS 704 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 704 (1485)
.+++|+|++|.++.+ |..|+++++|++|+|++|+++.+ |..|+++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 689999999998888 57889999999999999998866 6789999999999999985555557788999999999999
Q ss_pred CCCCcccc-cccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEe
Q 042986 705 DTDSLEEM-PLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQW 783 (1485)
Q Consensus 705 ~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 783 (1485)
+|. +..+ |..++++++|++|...... +. .+
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~------l~------------------~~------------------------ 144 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNH------IS------------------SI------------------------ 144 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSC------CC------------------CC------------------------
T ss_pred ccC-cccCCcchhccCCcccEEECCCCc------cc------------------cc------------------------
Confidence 888 5555 4557777777776221100 00 00
Q ss_pred ccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccC-cCCCccccCCee--EEEEecCCCCCCCCCCCCCCCCc
Q 042986 784 TCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFP-TWLGCSFFSNLV--TLKFQDCSMCTSVPSVGQLPSLK 860 (1485)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~ 860 (1485)
....+..+++|+.|+++++....++ ..+. .+++|+ .|++++|.+.+..|......+|+
T Consensus 145 -----------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 145 -----------------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp -----------------CCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred -----------------CcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccc
Confidence 0011222456666666666655543 2222 355666 67777777766666555556777
Q ss_pred eeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCC--CcccEEEeccCCCccCCCCCCCC
Q 042986 861 HLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGF--PKLRELHIVRCSKLQGTLPTHLP 938 (1485)
Q Consensus 861 ~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp~~l~ 938 (1485)
.|+++++..+....... ....++.+.+..+........ ....+..+ .+|+.|++++| .+. .++.
T Consensus 206 ~L~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i--~~~~~~~l~~~~L~~L~l~~n-~l~-~~~~--- 271 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVESINLQKH-YFF-NISS--- 271 (606)
T ss_dssp EEECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCC--CGGGGGGGGGSEEEEEECTTC-CCS-SCCT---
T ss_pred ccccCCchhHHHHhhhc-------cccchhheechhhcccccccc--ChhHhchhhcCceeEEEeecC-ccC-ccCH---
Confidence 77777665322110000 011122222222211111000 00011111 14555555552 443 2221
Q ss_pred CccEEEEecccccccccCCCCcceEEEEecCCCceeeccCccccccccccccccccCC-CcccCCCCCceEEeccCCCcc
Q 042986 939 LLDILVVQNCEELLVSVASLPALCKLRIDRCKKVVWRSTTDCGSQLYKDISNQMFLGG-PLKLHLPKLEELDISIIDELT 1017 (1485)
Q Consensus 939 ~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~-~~~~~l~~L~~L~l~~~~~l~ 1017 (1485)
..+..+++|+.+++++|.+... ..+..+++|++|+++++....
T Consensus 272 ------------------------------------~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 272 ------------------------------------NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp ------------------------------------TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred ------------------------------------HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc
Confidence 1123344444444444444433 223455666666666553221
Q ss_pred ccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccc-cccCCCCcceEeeccC
Q 042986 1018 YIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPK-SLLSLSSLTEIRIHNC 1096 (1485)
Q Consensus 1018 ~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~-~l~~l~~L~~L~L~~~ 1096 (1485)
.. ...+..+++|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 316 ~~-----------------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 316 LC-----------------------------------QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp GG-----------------------------------GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred Cc-----------------------------------hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 10 01344556677777777766655443 3667777777777777
Q ss_pred CCcccc--CC-CCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccc
Q 042986 1097 SSLVSF--PD-AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRT 1173 (1485)
Q Consensus 1097 ~~l~~~--~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~ 1173 (1485)
...... +. ...+++|++|++++|......+.. +..+++|++|++++|......+..
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~------------------- 419 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQS------------------- 419 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTTCCEECCTTCC-------------------
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCCCcCCCcccch-------------------
Confidence 544332 22 223467777777777655544443 366777788877777521110000
Q ss_pred cccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccE
Q 042986 1174 LTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEV 1253 (1485)
Q Consensus 1174 l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1253 (1485)
.+..+ ++|++|++++|......+..+..+++|+.
T Consensus 420 ---------------------------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 420 ---------------------------------------------PFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp ---------------------------------------------TTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred ---------------------------------------------hhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 00111 13556666666555555555666666666
Q ss_pred EEeecCCCccc---cCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeC
Q 042986 1254 IEIVSCENLKI---LPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGG 1330 (1485)
Q Consensus 1254 L~L~~~~~~~~---l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 1330 (1485)
|++++|.+.+. .+..+..+++|++|++++|......|..+..+++|++|++++|......|..+.++++| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 66666665542 12345566666666666665444445556666666666666665555555566666666 666666
Q ss_pred CCCCccccCCCCCCCCcceEEeCCCCC
Q 042986 1331 VPSLLCFTEDGMFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1331 ~~~l~~~~~~~~~~~~L~~L~l~~~~~ 1357 (1485)
|......+......++|+.|++++|+.
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 644332222212235667777777665
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.8e-35 Score=371.21 Aligned_cols=514 Identities=15% Similarity=0.059 Sum_probs=254.8
Q ss_pred CcccEEEecCCCCCCCCC-ccCCCCcccEEeccCCccccc-ChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 626 QRLRVFSLRGYHNPELPD-SIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
+.|++|+|++|.++.+|. .|.++++|++|+|++|.++.+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 456666666666666543 566666666666666666655 445666666666666666322223556666666666666
Q ss_pred cCCCCccccc-ccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEE
Q 042986 704 SDTDSLEEMP-LGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQ 782 (1485)
Q Consensus 704 ~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 782 (1485)
++|. +..+| ..++++++|++|+...... . .. .....+.++++|+.|+++
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l------~------------------~~-----~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVAHNFI------H------------------SC-----KLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECCSSCC------C------------------CC-----CCCGGGGTCTTCCEEECC
T ss_pred cCCc-cccccccccCCCCCCCEEeCCCCcc------c------------------ce-----echHhHhhcCCCCEEEcc
Confidence 6665 44444 4466666666552211100 0 00 000112333444444443
Q ss_pred eccCCCCCCcchhhhHHHHhccCCCCCC----cceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCC-CCC-CCCCC
Q 042986 783 WTCSIDSLSSREAETEKTVLEMLKPHKN----LEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCT-SVP-SVGQL 856 (1485)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l 856 (1485)
++.... .....+..+.+ +..|+++++....+|..... ..+|+.|++++|.+.+ ..| .++.+
T Consensus 162 ~n~l~~-----------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l 228 (606)
T 3vq2_A 162 YNYIQT-----------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNL 228 (606)
T ss_dssp SSCCCE-----------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred CCccee-----------cChhhhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccc
Confidence 322100 00011111111 44677777776666655442 3367777777776542 222 35566
Q ss_pred CCCceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCCccCCCCCC
Q 042986 857 PSLKHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTH 936 (1485)
Q Consensus 857 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~ 936 (1485)
++|+.+.+.... ++....+.......+ .....+ .++.+.+..++.+.+.+|.
T Consensus 229 ~~L~~l~l~~~~-----------------~~~~~~l~~~~~~~~---------~~l~~l-~l~~l~l~~~~~~~~~~~~- 280 (606)
T 3vq2_A 229 AGLHVHRLILGE-----------------FKDERNLEIFEPSIM---------EGLCDV-TIDEFRLTYTNDFSDDIVK- 280 (606)
T ss_dssp TTCEEEEEEEEC-----------------CTTSCCCSCCCGGGG---------TTGGGS-EEEEEEECCCTTCCGGGGS-
T ss_pred cccccccccccc-----------------cccCCcccccChHHh---------hhhhhc-cHhheeccccccccccccc-
Confidence 666666553211 000000000000000 011111 4556666555555544332
Q ss_pred CCCccEEEEecccccccccCCCCcceEEEEecCCCceeeccCccccccccccccccccCCCcccCCCCCceEEeccCCCc
Q 042986 937 LPLLDILVVQNCEELLVSVASLPALCKLRIDRCKKVVWRSTTDCGSQLYKDISNQMFLGGPLKLHLPKLEELDISIIDEL 1016 (1485)
Q Consensus 937 l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l 1016 (1485)
+..+++|+.|++++|.......+..+.+|+.+++++|.+...+.+ .+++|+.|+++++...
T Consensus 281 ------------------~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 281 ------------------FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp ------------------CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSC
T ss_pred ------------------cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCc
Confidence 233445555555555433333445555566666666665444444 6677777777766433
Q ss_pred cccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCcccc--ccccccCCCCcceEeec
Q 042986 1017 TYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVK--LPKSLLSLSSLTEIRIH 1094 (1485)
Q Consensus 1017 ~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~--l~~~l~~l~~L~~L~L~ 1094 (1485)
..+ .+..+++|++|++++|.+.+. +|..+..+++|++|+++
T Consensus 342 ~~~-------------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 342 ISF-------------------------------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp EEC-------------------------------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred cch-------------------------------------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 311 234566777777777776544 35666777777777777
Q ss_pred cCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCcccc
Q 042986 1095 NCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTL 1174 (1485)
Q Consensus 1095 ~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l 1174 (1485)
+|.. ..+|.. +..+++|+.|++++|......+..
T Consensus 385 ~n~l-~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~-------------------- 418 (606)
T 3vq2_A 385 FNGA-IIMSAN-------------------------FMGLEELQHLDFQHSTLKRVTEFS-------------------- 418 (606)
T ss_dssp SCSE-EEECCC-------------------------CTTCTTCCEEECTTSEEESTTTTT--------------------
T ss_pred CCcc-ccchhh-------------------------ccCCCCCCeeECCCCccCCccChh--------------------
Confidence 7743 233321 234455555555554311000000
Q ss_pred ccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEE
Q 042986 1175 TVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVI 1254 (1485)
Q Consensus 1175 ~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1254 (1485)
.+..+ ++|++|++++|...+..|..+..+++|+.|
T Consensus 419 --------------------------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 419 --------------------------------------------AFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp --------------------------------------------TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred --------------------------------------------hhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 00011 125555555554444445555555556666
Q ss_pred EeecCCCcc-ccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCC
Q 042986 1255 EIVSCENLK-ILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPS 1333 (1485)
Q Consensus 1255 ~L~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~ 1333 (1485)
++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|++++|......|..+.++++|+.|++++|.
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR- 532 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-
Confidence 665555554 245555556666666666664444444445555566666666654444445555566666666666554
Q ss_pred CccccCCCC-CCCCcceEEeCCCCCC
Q 042986 1334 LLCFTEDGM-FPTNLHSLEIDGMKIW 1358 (1485)
Q Consensus 1334 l~~~~~~~~-~~~~L~~L~l~~~~~~ 1358 (1485)
+..+|.... ++++|+.|++++|+..
T Consensus 533 l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 533 IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CcccCHhHhhhcccCcEEEccCCCcc
Confidence 334444322 2335666666666653
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-35 Score=411.73 Aligned_cols=310 Identities=21% Similarity=0.303 Sum_probs=249.4
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccc-CeeEEEEEcCccC--HHH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QYYF-DLKAWTCVSDDFD--VIW 287 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~~ 287 (1485)
....||||++++++|.++|... ++..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 4566999999999999999754 246799999999999999999999997643 4445 6778999998543 445
Q ss_pred HHHHHHHhhcCCCC----CCCCHHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 288 LTTIILRSITKQTI----DNSDLNLLQEELKKQLSRK--KFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 288 ~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
.+..++..+..... ...+.+++.+.++..+.++ |+||||||||+. ..|..+ ++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 56677777765432 3457888999999999887 999999999975 455443 57999999999999
Q ss_pred hhhh-cCCcCceeCCC-CChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHH
Q 042986 362 VAAI-MGTVPAYQLKN-LSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGV 439 (1485)
Q Consensus 362 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~ 439 (1485)
++.. ++....+++.+ |+.++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.++ ..|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45567899996 99999999999988432 233456799999999999999999999999875 357766
Q ss_pred hhccccCC----C----cccccchhHHHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChhh
Q 042986 440 LSSKIWDL----P----EERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSED 511 (1485)
Q Consensus 440 l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~ 511 (1485)
++...... . .....+..+|.+||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 65432211 1 1113688999999999999999999999999999999999999999654 36
Q ss_pred HHHHHHHHHHhcccccccCC-CCCcEEEechHHHHHHHhcccc
Q 042986 512 LGHDFFKELHSRSFFQQSSN-NTSRFVMHDLINDLAQWAAGEI 553 (1485)
Q Consensus 512 ~~~~~~~~L~~~sl~~~~~~-~~~~~~mHdlv~~~a~~~~~~~ 553 (1485)
.+++++++|+++||++.... ...+|+|||++|++|+..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999999997653 3346999999999999987654
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-33 Score=360.00 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=79.7
Q ss_pred ccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccccccCccccceeeccCC
Q 042986 628 LRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDT 706 (1485)
Q Consensus 628 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 706 (1485)
.+.++.+++.++.+|..+. .+|++|+|++|+++.+| ..|.++++|++|++++|......|..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4678999999999998776 79999999999999886 58999999999999999544444667999999999999999
Q ss_pred CCcccc-cccccCccccccc
Q 042986 707 DSLEEM-PLGIGKLTCLRTL 725 (1485)
Q Consensus 707 ~~l~~~-p~~i~~L~~L~~L 725 (1485)
. +..+ |..++++++|++|
T Consensus 91 ~-l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 91 P-IQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp C-CCCCCTTSSTTCTTCCEE
T ss_pred c-ccccChhhcCCcccCCEE
Confidence 8 5555 6667777776666
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-31 Score=347.47 Aligned_cols=267 Identities=15% Similarity=0.074 Sum_probs=177.9
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCC-CCCCCCCEEEEecCCCCCcCccccccCCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDA-VLPSQLRVISIWDCGALKFLPDAWMLDNNS 1135 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 1135 (1485)
.+..+++|+.|+|++|.+.+..|..+.++++|++|++++|......+.. ..+++|+.|++++|......+.. +.+++
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~ 362 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT--FKFLE 362 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC--SCSCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh--hcCCC
Confidence 3556677777777777777666777777777777777777544333322 23467777777777654433332 46677
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccc
Q 042986 1136 SLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGAL 1215 (1485)
Q Consensus 1136 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l 1215 (1485)
+|++|++++|. ++.++ .+++|+.+.++++. +..+
T Consensus 363 ~L~~L~Ls~N~-l~~i~---~~~~L~~L~l~~N~-l~~l----------------------------------------- 396 (844)
T 3j0a_A 363 KLQTLDLRDNA-LTTIH---FIPSIPDIFLSGNK-LVTL----------------------------------------- 396 (844)
T ss_dssp CCCEEEEETCC-SCCCS---SCCSCSEEEEESCC-CCCC-----------------------------------------
T ss_pred CCCEEECCCCC-CCccc---CCCCcchhccCCCC-cccc-----------------------------------------
Confidence 78888888775 33222 24455555555543 1111
Q ss_pred ccccccCCcccccEEEEeccCCcch-HHhhcccCCCccEEEeecCCCccccCc-CCCCCCCcCEEEeeCCCCC-----cc
Q 042986 1216 DHLVVGNLPQALKFLSIWHCSRLES-IVERLDNNTSLEVIEIVSCENLKILPH-GLHKLWRLQEIDIHGCENL-----VS 1288 (1485)
Q Consensus 1216 ~~~~~~~l~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l-----~~ 1288 (1485)
+. ...+++.|++++|..... .+..+.++++|+.|++++|.+.+..+. .+..+++|+.|++++|... ..
T Consensus 397 ~~-----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 397 PK-----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CC-----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred cc-----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 00 013588888888866542 244467889999999999887764432 3556889999999998644 22
Q ss_pred cCCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCC
Q 042986 1289 FPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFH 1368 (1485)
Q Consensus 1289 ~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 1368 (1485)
.+..+..+++|++|++++|......|..+.++++|+.|++++| .+..++... ++++|+.|++++|......+.
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~~L~~L~Ls~N~l~~~~~~----- 544 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND-LPANLEILDISRNQLLAPNPD----- 544 (844)
T ss_dssp CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC-CCSCCCEEEEEEECCCCCCSC-----
T ss_pred chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhh-hhccccEEECCCCcCCCCChh-----
Confidence 2344667889999999997655455556788999999999987 455555544 348899999999988665554
Q ss_pred ccccccceeeccccc
Q 042986 1369 RLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1369 ~l~~L~~L~l~~n~~ 1383 (1485)
.+++|+.|++++|+.
T Consensus 545 ~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 545 VFVSLSVLDITHNKF 559 (844)
T ss_dssp CCSSCCEEEEEEECC
T ss_pred HhCCcCEEEecCCCc
Confidence 245888999999874
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=350.85 Aligned_cols=101 Identities=19% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCcccEEEecCCCCCCC-CCccCCCCcccEEeccCCc-cccc-ChhhhccccccEeccccccccccccccccCcccccee
Q 042986 625 LQRLRVFSLRGYHNPEL-PDSIGNLRNLRYLNLSGTN-IKTL-PESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHL 701 (1485)
Q Consensus 625 l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~-i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 701 (1485)
.+.|++|||++|.++.+ |.+|+++++|++|+|++|. +..+ |..|+++++|++|+|++|......|..+.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46788889988888776 5788888899999998884 4466 6788888899999998885444557788888899999
Q ss_pred eccCCCCccccccc--ccCccccccc
Q 042986 702 KNSDTDSLEEMPLG--IGKLTCLRTL 725 (1485)
Q Consensus 702 ~l~~~~~l~~~p~~--i~~L~~L~~L 725 (1485)
++++|.....+|.. ++++++|++|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEE
Confidence 98888733335544 7777777777
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=347.09 Aligned_cols=304 Identities=23% Similarity=0.329 Sum_probs=234.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccc-CeeEEEEEcCccCHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QYYF-DLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~ 290 (1485)
...||||++++++|.++|... .+..++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 345999999999999999643 235789999999999999999999997665 7889 58999999875 3333333
Q ss_pred HH---HHhhcCC----CCCCCCHHHHHHHHHHHhCC--CcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 291 II---LRSITKQ----TIDNSDLNLLQEELKKQLSR--KKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 291 ~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
.+ +..+... .....+.+.+...++..+.+ +++||||||||+. ..+.. + ++|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcH
Confidence 33 3444421 12345677788888888876 7999999999874 33322 2 56899999999998
Q ss_pred hhhhcCCcCceeC---CCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHH
Q 042986 362 VAAIMGTVPAYQL---KNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEG 438 (1485)
Q Consensus 362 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~ 438 (1485)
++..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+.+|++++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 877654 234444 6899999999999988642 122346788999999999999999999998874 36877
Q ss_pred HhhccccCC--------CcccccchhHHHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCCCCChh
Q 042986 439 VLSSKIWDL--------PEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEENENPSE 510 (1485)
Q Consensus 439 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e 510 (1485)
.++...... ......+..++..||+.||++.|.||++||+||+|+.|+.+.++..|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 765432211 11224688999999999999999999999999999999999999999643 2
Q ss_pred hHHHHHHHHHHhcccccccC-CCCCcEEEechHHHHHHHhc
Q 042986 511 DLGHDFFKELHSRSFFQQSS-NNTSRFVMHDLINDLAQWAA 550 (1485)
Q Consensus 511 ~~~~~~~~~L~~~sl~~~~~-~~~~~~~mHdlv~~~a~~~~ 550 (1485)
+.+..++++|+++||++... +....|+||+++|++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 45788999999999998654 33457999999999999763
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.5e-30 Score=323.01 Aligned_cols=155 Identities=18% Similarity=0.119 Sum_probs=113.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccC-cCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILP-HGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l 1304 (1485)
+|++|++++|...+..+ .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 374 ~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 47888888876544333 37788888888888887766655 46778888888888888666666767777888888888
Q ss_pred ccccCc-cccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1305 GGCKKL-EALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1305 ~~c~~l-~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
++|... ..+|..+..+++|+.|++++|......|......++|++|++++|..... +. ..+.++++|++|++++|+.
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PD-GIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CT-TTTTTCTTCCEEECCSSCB
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-CH-HHhhcccCCcEEEecCCcc
Confidence 887654 35777788888888888888765544455444567888888888865443 33 3578888899999998874
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=325.42 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=77.1
Q ss_pred ccEEEEeccCCcchHH-hhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCC-cccCCCCcCccccceEEE
Q 042986 1227 LKFLSIWHCSRLESIV-ERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENL-VSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~~p~~~~~~~~L~~L~l 1304 (1485)
|++|++++|...+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|... ..+|..+..+++|++|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 5555565554444333 34556666666666666666666666666666666666666433 245666666666666666
Q ss_pred ccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCc
Q 042986 1305 GGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWK 1359 (1485)
Q Consensus 1305 ~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 1359 (1485)
++|......|..+.++++|++|++++|......+......++|+.|++++|+...
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 6655444445566666666666666654332222222234667777777766543
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.6e-30 Score=330.23 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=87.4
Q ss_pred cccEEEEeccCCcchHHhhcc--cCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLD--NNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLV 1303 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~ 1303 (1485)
+|++|+|++|... .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|+ +
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ 788 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------D 788 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------C
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------C
Confidence 4777788777554 5666665 77888888888877666 67777778888888887764 2
Q ss_pred EccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1304 IGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1304 l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
+++|.....+|..+.++++|+.|+|++|.. ..+|... .++|+.|++++|+....-+. .+.....+..+.+.+|.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N~l~~i~~~--~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVT--SVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSCTTCEEECG--GGHHHHHTTCCEEECCT
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCCCCCccChH--HccccccchheeecCCC
Confidence 344555566677777777777777777655 6666542 35777888877776543222 24444455666666654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.4e-29 Score=314.89 Aligned_cols=347 Identities=15% Similarity=0.148 Sum_probs=195.0
Q ss_pred CcccEEEecCCCCCCC-CCccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccc-cccCccccceee
Q 042986 626 QRLRVFSLRGYHNPEL-PDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCA-DMGNLIKLHHLK 702 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 702 (1485)
+.|++|+|++|.++.+ |..|+++++|++|+|++|+++.+| ..|+++++|++|++++| .+..+|. .++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 4566666666666555 345666666666666666666553 45666666666666666 3333333 366666666666
Q ss_pred ccCCCCccc--ccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEE
Q 042986 703 NSDTDSLEE--MPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLM 780 (1485)
Q Consensus 703 l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 780 (1485)
+++|. +.. .|..+++
T Consensus 105 Ls~n~-l~~~~~~~~~~~-------------------------------------------------------------- 121 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPN-------------------------------------------------------------- 121 (549)
T ss_dssp CTTCC-CSSSCSSCSCTT--------------------------------------------------------------
T ss_pred CCCCc-ccccchhhhhhc--------------------------------------------------------------
Confidence 66665 332 1222222
Q ss_pred EEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCC-CcccC-cCCCccccCCeeEEEEecCCCCCCCC-CCCCCC
Q 042986 781 LQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFR-GTKFP-TWLGCSFFSNLVTLKFQDCSMCTSVP-SVGQLP 857 (1485)
Q Consensus 781 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~ 857 (1485)
+++|+.|+++++. ...+| ..+. .+++|+.|++++|.+.+..| .++.++
T Consensus 122 ---------------------------l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 122 ---------------------------LTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp ---------------------------CTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred ---------------------------cCCccEEECCCCccccccCHhhhh--cccccCeeeccCCcccccChhhhhccc
Confidence 2344444555443 33444 3343 47899999999999877666 688888
Q ss_pred CCceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCCccCC-----
Q 042986 858 SLKHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGT----- 932 (1485)
Q Consensus 858 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----- 932 (1485)
+|++|+++++.. ..++..+ ...+++|+.|++++| ++.+.
T Consensus 173 ~L~~L~l~~n~~-~~~~~~~----------------------------------~~~l~~L~~L~L~~n-~l~~~~~~~~ 216 (549)
T 2z81_A 173 DIHHLTLHLSES-AFLLEIF----------------------------------ADILSSVRYLELRDT-NLARFQFSPL 216 (549)
T ss_dssp EEEEEEEECSBS-TTHHHHH----------------------------------HHSTTTBSEEEEESC-BCTTCCCCCC
T ss_pred cCceEecccCcc-cccchhh----------------------------------HhhcccccEEEccCC-cccccccccc
Confidence 999999887642 1111111 123455666666553 33321
Q ss_pred -CCCCCCCccEEEEecccc-------cccccCCCCcceEEEEecCCCceeeccCccccccccccccccccCCCcccCCCC
Q 042986 933 -LPTHLPLLDILVVQNCEE-------LLVSVASLPALCKLRIDRCKKVVWRSTTDCGSQLYKDISNQMFLGGPLKLHLPK 1004 (1485)
Q Consensus 933 -lp~~l~~L~~L~l~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~~~~~l~~ 1004 (1485)
+....++|+.|.+.++.. +...+..+++|+.+++++|.......+ . . .....+..+++
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~---~---~--------~~~~~~~~l~~ 282 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF---N---P--------SESDVVSELGK 282 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC---C---C--------CTTTCCCCCTT
T ss_pred chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc---c---c--------cchhhhhhhcc
Confidence 112345556666555531 112234556666666666642211110 0 0 00122345677
Q ss_pred CceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccccc-c
Q 042986 1005 LEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSL-L 1083 (1485)
Q Consensus 1005 L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l-~ 1083 (1485)
|+.|++.++....... ..+++. .+...++|+.|++++|.+. .+|..+ .
T Consensus 283 L~~L~l~~~~i~~~~~-----------------~~~l~~-------------~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 283 VETVTIRRLHIPQFYL-----------------FYDLST-------------VYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp CCEEEEESCBCSCGGG-----------------SCCCCH-------------HHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred cccccccccccchhhh-----------------cccchh-------------hhhhcccceEEEeccCccc-cCCHHHHh
Confidence 7788777653211000 000110 1233567899999988764 566555 5
Q ss_pred CCCCcceEeeccCCCccccCC----CCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCC
Q 042986 1084 SLSSLTEIRIHNCSSLVSFPD----AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCH 1146 (1485)
Q Consensus 1084 ~l~~L~~L~L~~~~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 1146 (1485)
++++|++|++++|.....+|. ...+++|+.|++++|......+....+..+++|++|++++|.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 788999999999876654421 234578888888888755432211224678888888888885
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2e-29 Score=318.08 Aligned_cols=448 Identities=20% Similarity=0.205 Sum_probs=262.5
Q ss_pred ccccccCCcccEEEecCCCCCCCC-CccCCCCcccEEeccCCcccccCh-hhhccccccEeccccccccc--cccccccC
Q 042986 619 LPKLFKLQRLRVFSLRGYHNPELP-DSIGNLRNLRYLNLSGTNIKTLPE-SINKLYNLHTFLLEGCWRLK--KLCADMGN 694 (1485)
Q Consensus 619 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~ 694 (1485)
+..+.++++|++|+|++|.+..+| ..|+++++|++|+|++|+++.+|. .|+++++|++|++++| .+. ..|..+++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhc
Confidence 345669999999999999998886 789999999999999999998875 4999999999999999 455 35678999
Q ss_pred ccccceeeccCCCCccccc-ccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCC
Q 042986 695 LIKLHHLKNSDTDSLEEMP-LGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGK 773 (1485)
Q Consensus 695 L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 773 (1485)
+++|++|++++|..+..+| ..++++++|++|+.... .+..
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n------------------------~l~~--------------- 162 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL------------------------SLRN--------------- 162 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET------------------------TCCE---------------
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCC------------------------cccc---------------
Confidence 9999999999998666776 35777777777722111 1000
Q ss_pred CCCceEEEEeccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCC----
Q 042986 774 KNLKVLMLQWTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTS---- 849 (1485)
Q Consensus 774 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~---- 849 (1485)
..+..+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+.+.
T Consensus 163 --------------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 163 --------------------------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp --------------------------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCC
T ss_pred --------------------------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccc
Confidence 0122344556667777776666666655432 367888888888877653
Q ss_pred CCCCCCCCCCceeEecCCCCceeeCccccCCCCCCCCCCccEEeeccccccccccccccCCcccCCCcccEEEeccCCCc
Q 042986 850 VPSVGQLPSLKHLEVCGMSRVKRLGSEFYGNDSPISFPCLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKL 929 (1485)
Q Consensus 850 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 929 (1485)
.+....+++|+.|+++++.........+ ......+++|+.+++.+| .+
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l-------------------------------~~~~~~~~~L~~l~l~~~-~~ 263 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNEL-------------------------------LKLLRYILELSEVEFDDC-TL 263 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHH-------------------------------HGGGGGCTTCCEEEEESC-EE
T ss_pred cchhhhhhcccceeccccccchhHHHHH-------------------------------HHHhhhhccccccccccc-cc
Confidence 2234456777777777653211110000 001123344455555443 11
Q ss_pred cC---------CCCCCCCCccEEEEeccccccc-ccCCCCcceEEEEecCCCceeeccCccccccccccccccccCCCc-
Q 042986 930 QG---------TLPTHLPLLDILVVQNCEELLV-SVASLPALCKLRIDRCKKVVWRSTTDCGSQLYKDISNQMFLGGPL- 998 (1485)
Q Consensus 930 ~~---------~lp~~l~~L~~L~l~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~~- 998 (1485)
.+ ..+..+++|+.|.+.++..-.. .+..++. .+....+|+.+++++|.+...+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~---------------~~~~~~~L~~L~l~~n~l~~ip~~ 328 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST---------------VYSLLEKVKRITVENSKVFLVPCS 328 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH---------------HHHHSTTCCEEEEESSCCCCCCHH
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchh---------------hhhhcccceEEEeccCccccCCHH
Confidence 11 1112334444444443321000 0000000 00112334444444444433321
Q ss_pred -ccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCcccc
Q 042986 999 -KLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVK 1077 (1485)
Q Consensus 999 -~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~ 1077 (1485)
+..+++|+.|++++|.....++.. ...++.+++|+.|++++|.+...
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------------------~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKN--------------------------------SACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHH--------------------------------HTCTTSSTTCCEEECTTSCCCCH
T ss_pred HHhcCccccEEEccCCccccccccc--------------------------------hhhhhccccCcEEEccCCccccc
Confidence 134666666666665432211100 01234556677777777766543
Q ss_pred cc--ccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccCC
Q 042986 1078 LP--KSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGV 1154 (1485)
Q Consensus 1078 l~--~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 1154 (1485)
.+ ..+..+++|++|++++|.. +.+|... .+++|+.|++++|... .++... .++|++|++++|. ++.++
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~----~~~L~~L~Ls~N~-l~~~~-- 447 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----PQTLEVLDVSNNN-LDSFS-- 447 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCS-CCCTTS----CTTCSEEECCSSC-CSCCC--
T ss_pred ccchhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCCcc-cccchh----cCCceEEECCCCC-hhhhc--
Confidence 21 3466677777777777743 3455432 3467777777777633 333321 3568888888775 21110
Q ss_pred CCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEec
Q 042986 1155 QLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWH 1234 (1485)
Q Consensus 1155 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~ 1234 (1485)
.. + ++|++|++++
T Consensus 448 ~~------------------------------------------------------------------l-~~L~~L~Ls~ 460 (549)
T 2z81_A 448 LF------------------------------------------------------------------L-PRLQELYISR 460 (549)
T ss_dssp CC------------------------------------------------------------------C-TTCCEEECCS
T ss_pred cc------------------------------------------------------------------C-ChhcEEECCC
Confidence 00 0 1366666666
Q ss_pred cCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccC
Q 042986 1235 CSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFP 1290 (1485)
Q Consensus 1235 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p 1290 (1485)
|... .+|. ...+++|+.|++++|.+.+..|..+..+++|++|++++|+.....|
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6443 4444 3567788888888887777777777888888888888887554433
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.6e-30 Score=323.67 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCcccccChhhhccccccEecccccccccc------------------cccccc--CccccceeeccCCCCccccccccc
Q 042986 658 GTNIKTLPESINKLYNLHTFLLEGCWRLKK------------------LCADMG--NLIKLHHLKNSDTDSLEEMPLGIG 717 (1485)
Q Consensus 658 ~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~ 717 (1485)
+|+++.+|..|+++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45677788889999999999999885 555 888888 999999999998887778888888
Q ss_pred Cccccccc
Q 042986 718 KLTCLRTL 725 (1485)
Q Consensus 718 ~L~~L~~L 725 (1485)
++++|++|
T Consensus 271 ~l~~L~~L 278 (636)
T 4eco_A 271 ALPEMQLI 278 (636)
T ss_dssp TCSSCCEE
T ss_pred cCCCCCEE
Confidence 88888877
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=9.3e-29 Score=314.14 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=50.1
Q ss_pred CCCCCCcceEEEecCCCcc------------------cCcCCCccccCCeeEEEEecCCCCCCCC-CCCCCCCCceeEec
Q 042986 805 LKPHKNLEQICISGFRGTK------------------FPTWLGCSFFSNLVTLKFQDCSMCTSVP-SVGQLPSLKHLEVC 865 (1485)
Q Consensus 805 l~~~~~L~~L~l~~~~~~~------------------~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 865 (1485)
+..+++|+.|+++++.... +|..++-..+++|++|+|++|.+.+.+| .++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4445666666776666655 7877762248999999999999988888 68999999999999
Q ss_pred CCC
Q 042986 866 GMS 868 (1485)
Q Consensus 866 ~~~ 868 (1485)
+|.
T Consensus 282 ~n~ 284 (636)
T 4eco_A 282 CNR 284 (636)
T ss_dssp TCT
T ss_pred CCC
Confidence 876
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=308.38 Aligned_cols=87 Identities=9% Similarity=-0.047 Sum_probs=49.1
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCcc--ccCC-CCCCCCCCEEEEecCCCCCcCccccccCCCC
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLV--SFPD-AVLPSQLRVISIWDCGALKFLPDAWMLDNNS 1135 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 1135 (1485)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.... .+|. ...+++|+.|++++|.....+|... +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCc
Confidence 356778888888888877777788888888888888885442 2221 1123444444444444333233221 23344
Q ss_pred CccEEEEecCC
Q 042986 1136 SLEILDIRHCH 1146 (1485)
Q Consensus 1136 ~L~~L~l~~c~ 1146 (1485)
+|++|++++|.
T Consensus 400 ~L~~L~Ls~N~ 410 (520)
T 2z7x_B 400 SLLSLNMSSNI 410 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECcCCC
Confidence 44444444443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.9e-28 Score=316.28 Aligned_cols=99 Identities=25% Similarity=0.302 Sum_probs=84.9
Q ss_pred CcccEEEecCCCCCCCC-CccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccc-cccCccccceee
Q 042986 626 QRLRVFSLRGYHNPELP-DSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCA-DMGNLIKLHHLK 702 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 702 (1485)
..+++|||++|.|+.+| .+|.++++|++|||++|+|+.+| .+|.+|++|++|+|++| .+..+|. .|.+|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 36899999999999997 57999999999999999999886 56899999999999999 5777775 479999999999
Q ss_pred ccCCCCccccccc-ccCcccccccC
Q 042986 703 NSDTDSLEEMPLG-IGKLTCLRTLC 726 (1485)
Q Consensus 703 l~~~~~l~~~p~~-i~~L~~L~~L~ 726 (1485)
+++|. +..+|.. ++++++|++|+
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred CCCCc-CCCCChhhhhcCcccCeec
Confidence 99998 7777754 78888888883
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=303.57 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=71.8
Q ss_pred cEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccccccCccccceeeccCCC
Q 042986 629 RVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 629 r~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 707 (1485)
++||+++|.++.+|..+. .+|++|+|++|.|+.+| ..|.++++|++|++++|......|..+.++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 689999999999998887 89999999999999886 689999999999999995444447789999999999999987
Q ss_pred Ccccccc
Q 042986 708 SLEEMPL 714 (1485)
Q Consensus 708 ~l~~~p~ 714 (1485)
+..+|.
T Consensus 81 -l~~lp~ 86 (520)
T 2z7x_B 81 -LVKISC 86 (520)
T ss_dssp -CCEEEC
T ss_pred -eeecCc
Confidence 556653
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.7e-27 Score=303.65 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=77.2
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCC--------CCCcCEEEeeCCCCCcccCCCCc--C
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHK--------LWRLQEIDIHGCENLVSFPEGGL--L 1295 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~--------l~~L~~L~L~~~~~l~~~p~~~~--~ 1295 (1485)
+|+.|++++|......+..+..+++|+.|+|++|.+. .+|..+.. +++|++|+|++|. +..+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhhhcc
Confidence 4888888888766333334457888999999888766 55544332 3389999999984 557887766 7
Q ss_pred ccccceEEEccccCccccccCCCCCCccCEEEeeCCC
Q 042986 1296 SAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1296 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 1332 (1485)
+++|+.|++++|. ++.+|..+.++++|+.|+|++|+
T Consensus 752 l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 752 LPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCC
Confidence 8899999999864 55588888888999999998754
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-26 Score=291.51 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=69.6
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccc-cccccCcccccee
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKL-CADMGNLIKLHHL 701 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 701 (1485)
.+...++++++++.++.+|..+. .+|++|+|++|.|+.+| ..|.++++|++|++++|. +..+ |..+.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEE
Confidence 34445889999999999998775 78999999999999886 688999999999999984 4444 6778899999999
Q ss_pred eccCCCCccccccc
Q 042986 702 KNSDTDSLEEMPLG 715 (1485)
Q Consensus 702 ~l~~~~~l~~~p~~ 715 (1485)
++++|. +..+|..
T Consensus 106 ~Ls~N~-l~~lp~~ 118 (562)
T 3a79_B 106 DVSHNR-LQNISCC 118 (562)
T ss_dssp ECTTSC-CCEECSC
T ss_pred ECCCCc-CCccCcc
Confidence 999887 6666644
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.4e-26 Score=291.40 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=75.3
Q ss_pred EEEecCCCCCCCCCccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccc-cccCccccceeeccCCC
Q 042986 630 VFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCA-DMGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 630 ~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 707 (1485)
..+-++-+++.+|..+. .++++|||++|+|+.+| .+|.++++|++|+|++| .+..+|+ .|.+|++|++|++++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 34555667889998774 48999999999999997 68999999999999999 5777755 58999999999999998
Q ss_pred Cccccccc-ccCccccccc
Q 042986 708 SLEEMPLG-IGKLTCLRTL 725 (1485)
Q Consensus 708 ~l~~~p~~-i~~L~~L~~L 725 (1485)
+..+|.+ |+++++|++|
T Consensus 112 -l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp -CCEECGGGGTTCTTCCEE
T ss_pred -CCCCCHHHhcCCCCCCEE
Confidence 7777754 5666666665
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=8e-27 Score=282.32 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=44.1
Q ss_pred ccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCccc-ccChhhhccccccEeccccccccccccccccCcccccee
Q 042986 623 FKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIK-TLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHL 701 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 701 (1485)
.+..+|++|++++|.++.+|++|+++++|++|++++|.+. .+|.+++++.+|+++++++|.. .+|++|
T Consensus 8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 3567899999999999999999999999999999999887 7899999999998888888731 567888
Q ss_pred eccCCCCcccccc
Q 042986 702 KNSDTDSLEEMPL 714 (1485)
Q Consensus 702 ~l~~~~~l~~~p~ 714 (1485)
++++|. +..+|.
T Consensus 77 ~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 77 ELNNLG-LSSLPE 88 (454)
T ss_dssp ECTTSC-CSCCCS
T ss_pred EecCCc-cccCCC
Confidence 888887 666654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.5e-26 Score=286.95 Aligned_cols=102 Identities=28% Similarity=0.311 Sum_probs=88.9
Q ss_pred cccccccCCcccEEEecCCCCCCCC-CccCCCCcccEEeccCCccccc-ChhhhccccccEeccccccccccccccccCc
Q 042986 618 ILPKLFKLQRLRVFSLRGYHNPELP-DSIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCADMGNL 695 (1485)
Q Consensus 618 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 695 (1485)
+|..+. +.|++|+|++|.+..+| ..|+++++|++|+|++|+|+.+ |..|.++++|++|++++| .+..+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--cc
Confidence 444443 78999999999999987 6899999999999999999987 688999999999999999 67889987 89
Q ss_pred cccceeeccCCCCccccc--ccccCccccccc
Q 042986 696 IKLHHLKNSDTDSLEEMP--LGIGKLTCLRTL 725 (1485)
Q Consensus 696 ~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L 725 (1485)
++|++|++++|. +..+| ..++++++|++|
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEE
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCcccEE
Confidence 999999999998 66654 678888888888
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.8e-25 Score=268.74 Aligned_cols=254 Identities=25% Similarity=0.262 Sum_probs=133.0
Q ss_pred ccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEE
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILD 1141 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 1141 (1485)
++|++|++++|.+.+ +| .+.++++|++|++++|... .+|. .+++|+.|++++|... .+|. +..+++|++|+
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD--LPLSLESIVAGNNILE-ELPE---LQNLPFLTTIY 243 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSCCS-SCCC---CTTCTTCCEEE
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCC--CcCcccEEECcCCcCC-cccc---cCCCCCCCEEE
Confidence 367788888877655 55 5788888888888888543 4554 2368888888888755 5553 46788889999
Q ss_pred EecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccccc
Q 042986 1142 IRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVG 1221 (1485)
Q Consensus 1142 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~ 1221 (1485)
+++|. ++.++. .+++|+.|++++|. ++. ++
T Consensus 244 l~~N~-l~~l~~--~~~~L~~L~l~~N~-l~~-----------------------------------------l~----- 273 (454)
T 1jl5_A 244 ADNNL-LKTLPD--LPPSLEALNVRDNY-LTD-----------------------------------------LP----- 273 (454)
T ss_dssp CCSSC-CSSCCS--CCTTCCEEECCSSC-CSC-----------------------------------------CC-----
T ss_pred CCCCc-CCcccc--cccccCEEECCCCc-ccc-----------------------------------------cC-----
Confidence 88886 333332 23455555554432 111 11
Q ss_pred CCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccce
Q 042986 1222 NLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKR 1301 (1485)
Q Consensus 1222 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~ 1301 (1485)
..+++|++|++++|...+ ++. ..++|+.|++++|.+.+ ++.. .++|++|++++|. +..+|.. +++|++
T Consensus 274 ~~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~ 341 (454)
T 1jl5_A 274 ELPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNK-LIELPAL---PPRLER 341 (454)
T ss_dssp CCCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSC-CSCCCCC---CTTCCE
T ss_pred cccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCc-ccccccc---CCcCCE
Confidence 012358888888876544 221 12578888888877654 2211 2478888888885 4446653 467888
Q ss_pred EEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1302 LVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1302 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
|++++| .++.+|. .+++|++|++++|+... +| ..|..+..|. .|.....++. .+++|++|++++|
T Consensus 342 L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~-l~---~ip~~l~~L~--~n~~~~~i~~-----~~~~L~~L~ls~N 406 (454)
T 1jl5_A 342 LIASFN-HLAEVPE---LPQNLKQLHVEYNPLRE-FP---DIPESVEDLR--MNSHLAEVPE-----LPQNLKQLHVETN 406 (454)
T ss_dssp EECCSS-CCSCCCC---CCTTCCEEECCSSCCSS-CC---CCCTTCCEEE--CCC-------------------------
T ss_pred EECCCC-ccccccc---hhhhccEEECCCCCCCc-CC---CChHHHHhhh--hccccccccc-----ccCcCCEEECCCC
Confidence 888885 4556775 46788888888765433 22 1244555544 3333333433 2578999999998
Q ss_pred ccccccccccccccccCCCCCccceeecccC
Q 042986 1382 DERMVVSFPLEDIGLGTTLPACLTHLDIFNF 1412 (1485)
Q Consensus 1382 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 1412 (1485)
....+ ..+|.+++.|.+.+|
T Consensus 407 ~l~~~-----------~~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 407 PLREF-----------PDIPESVEDLRMNSE 426 (454)
T ss_dssp -------------------------------
T ss_pred cCCcc-----------ccchhhHhheeCcCc
Confidence 74311 135566666655443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.2e-25 Score=266.70 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=78.8
Q ss_pred cccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccc
Q 042986 620 PKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLH 699 (1485)
Q Consensus 620 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 699 (1485)
..+.++++|++|++++|.++.+| .|+.+++|++|+|++|+++.+| ++.+++|++|++++| .+..+| ++++++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 34558899999999999999987 6899999999999999999886 889999999999998 566665 88899999
Q ss_pred eeeccCCCCcccccccccCccccccc
Q 042986 700 HLKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 700 ~L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
+|++++|. +..+| ++.+++|++|
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred EEECCCCc-CCeec--CCCCCcCCEE
Confidence 99999887 55554 4444444444
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.2e-23 Score=257.87 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=72.0
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+++|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. +.++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 45677888888888877764 7778888888888888887776 788888888888887 4555655 788888888888
Q ss_pred cCCCCcccccccccCccccccc
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
++|. +..+|. ++++++|++|
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCC-CCCChH-HcCCCCCCEE
Confidence 8776 666654 6666666666
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.2e-23 Score=253.04 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=87.2
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccce
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 700 (1485)
.+..+++|++|+|++|.+..+|. ++++++|++|++++|.++.+|. ++++++|++|++++| .+..+|. +.++++|++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence 45688999999999999999987 9999999999999999999887 999999999999999 6777776 999999999
Q ss_pred eeccCCCCcccccccccCccccccc
Q 042986 701 LKNSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 701 L~l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
|++++|. +..+| .++.+++|+.|
T Consensus 139 L~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 139 LELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp EEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred EECCCCc-cCCCh-hhccCCcccEe
Confidence 9999987 66665 37777777776
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=8e-23 Score=250.89 Aligned_cols=339 Identities=14% Similarity=0.042 Sum_probs=201.5
Q ss_pred CccCCCCCCCCCccEEEEeccccc---ccccCCCCcceEEEEecCCCc-e--eeccCccccccccccccccccCC--Ccc
Q 042986 928 KLQGTLPTHLPLLDILVVQNCEEL---LVSVASLPALCKLRIDRCKKV-V--WRSTTDCGSQLYKDISNQMFLGG--PLK 999 (1485)
Q Consensus 928 ~l~~~lp~~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~-~--~~~~~~l~~L~~l~ls~n~~~~~--~~~ 999 (1485)
.++ .+|...++|+.|+++++... +..+..+++|++|++++|... . ...+..+++|++|++++|.+... ..+
T Consensus 21 ~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 21 GLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred Ccc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 444 55554455666666555321 235677888888888888643 2 34577888888888888887654 356
Q ss_pred cCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCcccccc
Q 042986 1000 LHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLP 1079 (1485)
Q Consensus 1000 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~ 1079 (1485)
..+++|++|++++|.....+.. ...+..+++|++|++++|.+.+..|
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~---------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLS---------------------------------GNFFKPLTSLEMLVLRDNNIKKIQP 146 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHH---------------------------------SSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred cCcccCCEEeCCCCCCCccccC---------------------------------cccccCcccCCEEECCCCccCccCc
Confidence 7788888888887653221110 1135667888888888888877766
Q ss_pred cc-ccCCCCcceEeeccCCCccccCCCCC---CCCCCEEEEecCCCCCcCcccc------ccCCCCCccEEEEecCCCCc
Q 042986 1080 KS-LLSLSSLTEIRIHNCSSLVSFPDAVL---PSQLRVISIWDCGALKFLPDAW------MLDNNSSLEILDIRHCHSLT 1149 (1485)
Q Consensus 1080 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~------~~~~l~~L~~L~l~~c~~l~ 1149 (1485)
.. +.++++|++|++++|......+.... ..+|+.|++++|......+..+ .+..+++|++|++++|....
T Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 65 78888888888888865544443321 2577888888877554332211 01245678888888876333
Q ss_pred cccC----CCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcc
Q 042986 1150 YVAG----VQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQ 1225 (1485)
Q Consensus 1150 ~~~~----~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~ 1225 (1485)
..+. .....+|+.++++++..... .+..+.+.+..+..+.+.-.+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGS-------------------------------SFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSC-------------------------------CTTCCSSCCCCTTTTGGGTTS
T ss_pred cchhhhhccccccceeeEeecccccccc-------------------------------ccchhhhccCccccccccccc
Confidence 2211 11124455555555432211 111111111111111111113
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
+|++|++++|...+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|......|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 47777777776666666667777777777777777666666667777777777777775433334455566667777776
Q ss_pred cccCccccccCCCCCCccCEEEeeCC
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGV 1331 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~ 1331 (1485)
+|......|..+.++++|++|++++|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhhccccccccEEECCCC
Confidence 65544444555666666666666664
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.3e-22 Score=249.14 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=82.8
Q ss_pred ccccccccccccccCC--CcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhc
Q 042986 981 GSQLYKDISNQMFLGG--PLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQF 1058 (1485)
Q Consensus 981 ~~L~~l~ls~n~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~ 1058 (1485)
+++++|++++|.+... ..+..+++|++|+++++.....+.. ..|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~----------------------------------~~~ 75 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN----------------------------------NTF 75 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT----------------------------------TTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc----------------------------------ccc
Confidence 4455666666655543 3455677777777776543322211 135
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCC---CCCCCCCCEEEEecCCCCCcCccccccCCCC
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPD---AVLPSQLRVISIWDCGALKFLPDAWMLDNNS 1135 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 1135 (1485)
..+++|++|+|++|.+.+..|..+.++++|++|++++|.....++. ...+++|++|++++|......|..+ +.+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~ 154 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-FLNMR 154 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-GGGCT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-cCCCC
Confidence 5667777788877777766677777777888888877765443322 2235677777777777665555442 46677
Q ss_pred CccEEEEecCC
Q 042986 1136 SLEILDIRHCH 1146 (1485)
Q Consensus 1136 ~L~~L~l~~c~ 1146 (1485)
+|++|++++|.
T Consensus 155 ~L~~L~L~~n~ 165 (455)
T 3v47_A 155 RFHVLDLTFNK 165 (455)
T ss_dssp TCCEEECTTCC
T ss_pred cccEEeCCCCc
Confidence 78888887776
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.5e-22 Score=235.24 Aligned_cols=97 Identities=22% Similarity=0.422 Sum_probs=80.6
Q ss_pred ccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceee
Q 042986 623 FKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLK 702 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 702 (1485)
..+++|+.|+++++.+..+|. +..+++|++|++++|+++.+|. +.++++|++|++++| .+..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 377889999999999988875 8889999999999999998877 899999999999998 667765 588999999999
Q ss_pred ccCCCCcccccccccCccccccc
Q 042986 703 NSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 703 l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
+++|. +..+|. ++.+++|++|
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEE
T ss_pred CcCCc-ccCchh-hccCCceeEE
Confidence 99887 666654 6666666655
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.1e-21 Score=235.00 Aligned_cols=355 Identities=15% Similarity=0.114 Sum_probs=203.2
Q ss_pred CCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCceeEecCCCCceeeCccccCCCCCCCCC
Q 042986 808 HKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHLEVCGMSRVKRLGSEFYGNDSPISFP 887 (1485)
Q Consensus 808 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~ 887 (1485)
+++|+.|+++++....+|. +. .+++|++|++++|.+.+. | ++.+++|++|++++|. +..+. ...++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~-l~--~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~-l~~~~--------~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTG-IE--KLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNK-LTNLD--------VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCCCCTT-GG--GCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSC-CSCCC--------CTTCT
T ss_pred cCCCCEEEccCCCcccChh-hc--ccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCC-Cceee--------cCCCC
Confidence 4677777777777666662 32 477888888888877553 3 7777888888887764 22221 12355
Q ss_pred CccEEeeccccccccccccccCCcccCCCcccEEEeccCCCccCCCCCCCCCccEEEEecccccccccCCCCcceEEEEe
Q 042986 888 CLETLHFADMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLPLLDILVVQNCEELLVSVASLPALCKLRID 967 (1485)
Q Consensus 888 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 967 (1485)
+|+.|.+++.. +... .+..+++|++|++++ +++++ + .+..+++|++|+++
T Consensus 107 ~L~~L~L~~N~-l~~l-------~~~~l~~L~~L~l~~-N~l~~-l--------------------~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKL-------DVSQNPLLTYLNCAR-NTLTE-I--------------------DVSHNTQLTELDCH 156 (457)
T ss_dssp TCCEEECCSSC-CSCC-------CCTTCTTCCEEECTT-SCCSC-C--------------------CCTTCTTCCEEECT
T ss_pred cCCEEECCCCc-CCee-------cCCCCCcCCEEECCC-Cccce-e--------------------ccccCCcCCEEECC
Confidence 66666665532 1111 134556666666666 34442 2 23445566666666
Q ss_pred cCCCceeeccCccccccccccccccccCCCcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhh
Q 042986 968 RCKKVVWRSTTDCGSQLYKDISNQMFLGGPLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFS 1047 (1485)
Q Consensus 968 ~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~ 1047 (1485)
+|..+....+..+++|+.+++++|.+...+ +..+++|+.|+++++.... +
T Consensus 157 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~-~---------------------------- 206 (457)
T 3bz5_A 157 LNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK-L---------------------------- 206 (457)
T ss_dssp TCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSC-C----------------------------
T ss_pred CCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCe-e----------------------------
Confidence 664333334556666666777766666654 5566667777666543211 0
Q ss_pred hhhhhhhhhhccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCcc
Q 042986 1048 VAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPD 1127 (1485)
Q Consensus 1048 ~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 1127 (1485)
.+..+++|+.|++++|++.+ +| +..+++|+.|++++|... .+| ...+++|+.|+++++
T Consensus 207 ---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~-~~~l~~L~~L~l~~n-------- 264 (457)
T 3bz5_A 207 ---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELD-VSTLSKLTTLHCIQT-------- 264 (457)
T ss_dssp ---------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC-CTTCTTCCEEECTTC--------
T ss_pred ---------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcC-HHHCCCCCEEeccCC--------
Confidence 13445667777777776655 44 666777777777776433 333 223455665554433
Q ss_pred ccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccc
Q 042986 1128 AWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLIS 1207 (1485)
Q Consensus 1128 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~ 1207 (1485)
+|+.|++++|.....++. ..+++|+.|++++|..+..++... +.|+.+++++|+
T Consensus 265 --------~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~l~~l~~~~----------~~L~~L~l~~~~------- 318 (457)
T 3bz5_A 265 --------DLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQLYLLDCQA----------AGITELDLSQNP------- 318 (457)
T ss_dssp --------CCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCTTCCEEECTT----------CCCSCCCCTTCT-------
T ss_pred --------CCCEEECCCCccCCcccc-cccccCCEEECCCCcccceeccCC----------CcceEechhhcc-------
Confidence 244555555554444442 233456666666665554444211 124444443332
Q ss_pred cCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCc
Q 042986 1208 KNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLV 1287 (1485)
Q Consensus 1208 ~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~ 1287 (1485)
+|++|++++|...+ + .+..+++|+.|++++|.+.+ ++.|..|++++|....
T Consensus 319 ------------------~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 319 ------------------KLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp ------------------TCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred ------------------cCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 47777777776655 3 27778888888888876554 3456666666664322
Q ss_pred ccCCCCcCccccceEEEccccCccccccCCC
Q 042986 1288 SFPEGGLLSAKLKRLVIGGCKKLEALPLGMH 1318 (1485)
Q Consensus 1288 ~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 1318 (1485)
. ..+..|..+++++|+....+|..+.
T Consensus 370 ~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 370 E-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp E-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred c-----ceeeecCccccccCcEEEEcChhHh
Confidence 2 2445778888888776667776543
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.5e-21 Score=227.99 Aligned_cols=304 Identities=15% Similarity=0.091 Sum_probs=190.5
Q ss_pred CCCcceEEEEecCCCceeeccCccccccccccccccccCCCcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcch
Q 042986 957 SLPALCKLRIDRCKKVVWRSTTDCGSQLYKDISNQMFLGGPLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRL 1036 (1485)
Q Consensus 957 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L 1036 (1485)
.+++|++|++++|.......+..+++|+.+++++|.+...+.+..+++|++|++++|.. ..++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~---------------- 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDIS---------------- 104 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG----------------
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCch----------------
Confidence 34555566666555444445566666666777766666655566677777777776532 1110
Q ss_pred hhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEE
Q 042986 1037 KIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISI 1116 (1485)
Q Consensus 1037 ~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l 1116 (1485)
.+..+++|++|++++|.+... +. +..+++|+.|++++|.....++....+++|+.|++
T Consensus 105 --------------------~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 105 --------------------ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162 (347)
T ss_dssp --------------------GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred --------------------HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence 245566777777777765543 32 66777777777777766665555555567777777
Q ss_pred ecCCCCCcCccccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEee
Q 042986 1117 WDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEI 1196 (1485)
Q Consensus 1117 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i 1196 (1485)
++|......+ +..+++|+.|++++|. +..++....+++|+.++++++.
T Consensus 163 ~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~--------------------------- 210 (347)
T 4fmz_A 163 TESKVKDVTP----IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQ--------------------------- 210 (347)
T ss_dssp CSSCCCCCGG----GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSC---------------------------
T ss_pred cCCCcCCchh----hccCCCCCEEEccCCc-ccccccccCCCccceeecccCC---------------------------
Confidence 7776443322 3466777777777765 3333322333344444443332
Q ss_pred ecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcC
Q 042986 1197 HSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQ 1276 (1485)
Q Consensus 1197 ~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~ 1276 (1485)
+.+..+ +..+ ++|++|++++|......+ +..+++|+.|++++|.+... + .+..+++|+
T Consensus 211 --------------l~~~~~---~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~ 268 (347)
T 4fmz_A 211 --------------ITDITP---VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVKDLTKLK 268 (347)
T ss_dssp --------------CCCCGG---GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred --------------CCCCch---hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHhcCCCcC
Confidence 111100 1222 358888888886655433 78888899999988876553 3 577888999
Q ss_pred EEEeeCCCCCcccCCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCC
Q 042986 1277 EIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMK 1356 (1485)
Q Consensus 1277 ~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 1356 (1485)
+|++++|. +..++ .+..+++|++|++++|......+..+.++++|+.|++++|+.....+ ....++|++|++++|+
T Consensus 269 ~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 99999884 44443 35677889999999887666666677788899999999887544333 2235789999998887
Q ss_pred C
Q 042986 1357 I 1357 (1485)
Q Consensus 1357 ~ 1357 (1485)
.
T Consensus 345 i 345 (347)
T 4fmz_A 345 I 345 (347)
T ss_dssp -
T ss_pred c
Confidence 5
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4.8e-20 Score=227.26 Aligned_cols=277 Identities=19% Similarity=0.180 Sum_probs=182.0
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC--CCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--LPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.|..+++|++|+|++|.+....|..|.++++|++|+|++|. +..+|... .+++|++|++++|......+.. +..+
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l 127 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDL 127 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTT--TTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhH--cccc
Confidence 45667778888888877776667777788888888887774 33454432 3577777887777766555544 4677
Q ss_pred CCccEEEEecCCCCcccc--CCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCC
Q 042986 1135 SSLEILDIRHCHSLTYVA--GVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELP 1212 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~ 1212 (1485)
++|++|++++|.. ..+. ....+++|+.|++++|. ++.
T Consensus 128 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~--------------------------------------- 166 (477)
T 2id5_A 128 YNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCN-LTS--------------------------------------- 166 (477)
T ss_dssp TTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCC-CSS---------------------------------------
T ss_pred ccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCc-Ccc---------------------------------------
Confidence 7788888877752 2221 11223334444444332 110
Q ss_pred cccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-
Q 042986 1213 GALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE- 1291 (1485)
Q Consensus 1213 ~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~- 1291 (1485)
++...+..++ +|+.|++++|......+..+..+++|+.|++++|...+.+|.......+|++|++++|. +..+|.
T Consensus 167 --~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 242 (477)
T 2id5_A 167 --IPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYL 242 (477)
T ss_dssp --CCHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHH
T ss_pred --cChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHH
Confidence 1111122332 48888888887776666678888888888888888888777776667788888888884 445553
Q ss_pred CCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccc
Q 042986 1292 GGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLT 1371 (1485)
Q Consensus 1292 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 1371 (1485)
.+..+++|++|++++|......+..+.++++|+.|++++|......+......++|+.|++++|.... ++. ..|..++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~~l~ 320 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEE-SVFHSVG 320 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCG-GGBSCGG
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCH-hHcCCCc
Confidence 35667788888888866444444567788888888888876554444444445788888888886543 433 3567788
Q ss_pred cccceeeccccc
Q 042986 1372 SLRRLAISGCDE 1383 (1485)
Q Consensus 1372 ~L~~L~l~~n~~ 1383 (1485)
+|++|++++|+.
T Consensus 321 ~L~~L~l~~N~l 332 (477)
T 2id5_A 321 NLETLILDSNPL 332 (477)
T ss_dssp GCCEEECCSSCE
T ss_pred ccCEEEccCCCc
Confidence 888888888874
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.3e-20 Score=225.38 Aligned_cols=239 Identities=20% Similarity=0.208 Sum_probs=118.6
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC--CCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--LPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.+..+++|++|++++|.+....|..+.++++|++|++++|.. +.+|... .+++|++|++++|......+.. +..+
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l 164 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQAT 164 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TSSC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhh--ccCC
Confidence 345566777777777777666666677777777777777743 3555432 3567777777777755544433 3667
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcc
Q 042986 1135 SSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGA 1214 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~ 1214 (1485)
++|++|++++|. ++.++ ...+++|+.++++++. +..+. ..+.|+.+++.++. +..
T Consensus 165 ~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~n~-l~~~~-----------~~~~L~~L~l~~n~----------l~~- 219 (390)
T 3o6n_A 165 TSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLA-----------IPIAVEELDASHNS----------INV- 219 (390)
T ss_dssp TTCCEEECCSSC-CSBCC-GGGCTTCSEEECCSSC-CSEEE-----------CCSSCSEEECCSSC----------CCE-
T ss_pred CCCCEEECCCCc-CCccc-cccccccceeeccccc-ccccC-----------CCCcceEEECCCCe----------eee-
Confidence 777777777775 22222 2223445555554432 11110 01123333332221 110
Q ss_pred cccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCc
Q 042986 1215 LDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGL 1294 (1485)
Q Consensus 1215 l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~ 1294 (1485)
++ ...+++|++|++++|..... ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|. +..+|..+.
T Consensus 220 ~~----~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 292 (390)
T 3o6n_A 220 VR----GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ 292 (390)
T ss_dssp EE----CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSS
T ss_pred cc----ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccC
Confidence 00 01112355555555543332 234455555555555555444444445555555555555542 333444444
Q ss_pred CccccceEEEccccCccccccCCCCCCccCEEEeeCC
Q 042986 1295 LSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGV 1331 (1485)
Q Consensus 1295 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 1331 (1485)
.+++|++|++++| .++.+|..+..+++|+.|++++|
T Consensus 293 ~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 293 PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 4445555555553 23344433444444444444443
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=228.36 Aligned_cols=133 Identities=18% Similarity=0.139 Sum_probs=109.1
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
+|++|++++|...+.++.......+|+.|++++|.+....+..+..+++|++|+|++|......+..+..+++|++|+++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECC
Confidence 59999999999988888777777899999999998775544678899999999999997555445567888999999999
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCc
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWK 1359 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~ 1359 (1485)
+|......|..+.++++|+.|++++|. +..++.. ....++|++|++++|+..-
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccC
Confidence 987666668889999999999999984 4444443 2335799999999998754
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5e-20 Score=220.30 Aligned_cols=300 Identities=14% Similarity=0.067 Sum_probs=171.8
Q ss_pred CCCccEEEEecccc--cccc-cCCCCcceEEEEecCCCcee--eccCccccccccccccccccCC--CcccCCCCCceEE
Q 042986 937 LPLLDILVVQNCEE--LLVS-VASLPALCKLRIDRCKKVVW--RSTTDCGSQLYKDISNQMFLGG--PLKLHLPKLEELD 1009 (1485)
Q Consensus 937 l~~L~~L~l~~~~~--l~~~-~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~ls~n~~~~~--~~~~~l~~L~~L~ 1009 (1485)
+++++.|.+.++.. ++.. +..+++|++|++++|..... ..+..+++|+.|++++|.+... ..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45667777766632 2211 34456666666666653322 2345555555556555555444 2234555555555
Q ss_pred eccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccccccCCCCcc
Q 042986 1010 ISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLT 1089 (1485)
Q Consensus 1010 l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~ 1089 (1485)
++++.. ..++. ..|..+++|++|++++|.+....+..+..+++|+
T Consensus 124 L~~n~l-~~l~~----------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 124 LERNDL-SSLPR----------------------------------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp CCSSCC-CCCCT----------------------------------TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CCCCcc-CcCCH----------------------------------HHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 554421 11111 1234445555555555555544444555555555
Q ss_pred eEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCC
Q 042986 1090 EIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCD 1169 (1485)
Q Consensus 1090 ~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 1169 (1485)
+|++++|... .++ ...+++|+.|++++|..... ...++|+.|++++|. +..++. ..+++
T Consensus 169 ~L~l~~n~l~-~~~-~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~-l~~~~~-~~~~~---------- 227 (390)
T 3o6n_A 169 NLQLSSNRLT-HVD-LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNS-INVVRG-PVNVE---------- 227 (390)
T ss_dssp EEECCSSCCS-BCC-GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSC-CCEEEC-CCCSS----------
T ss_pred EEECCCCcCC-ccc-cccccccceeeccccccccc-------CCCCcceEEECCCCe-eeeccc-ccccc----------
Confidence 5555555322 221 12234555555554442211 122344555555443 222211 11223
Q ss_pred CccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhcccCC
Q 042986 1170 NIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNT 1249 (1485)
Q Consensus 1170 ~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~ 1249 (1485)
|+.|++.++ .+.+. + .++.++ +|++|++++|...+..|..+..++
T Consensus 228 ---------------------L~~L~l~~n----------~l~~~-~--~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 228 ---------------------LTILKLQHN----------NLTDT-A--WLLNYP-GLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp ---------------------CCEEECCSS----------CCCCC-G--GGGGCT-TCSEEECCSSCCCEEESGGGTTCS
T ss_pred ---------------------ccEEECCCC----------CCccc-H--HHcCCC-CccEEECCCCcCCCcChhHccccc
Confidence 334443332 22211 1 133343 599999999988888889999999
Q ss_pred CccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccccCccccccCCCCCCccCEEEee
Q 042986 1250 SLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIG 1329 (1485)
Q Consensus 1250 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 1329 (1485)
+|+.|++++|.+.+ +|..+..+++|++|++++|. +..+|..+..+++|++|++++|. ++.++ +..+++|+.|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcC
Confidence 99999999987665 56677889999999999995 66777777788999999999975 55554 5566777777777
Q ss_pred CCC
Q 042986 1330 GVP 1332 (1485)
Q Consensus 1330 ~~~ 1332 (1485)
+|+
T Consensus 348 ~N~ 350 (390)
T 3o6n_A 348 HND 350 (390)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.4e-20 Score=235.68 Aligned_cols=262 Identities=19% Similarity=0.187 Sum_probs=159.2
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC--CCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--LPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.|..+++|++|+|++|.+.+..|..+.++++|++|+|++|... .+|... .+++|++|++++|......+.. +.++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l 170 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQAT 170 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhh--hhcC
Confidence 3455667777777777766666666677777777777777433 444432 3567777777777655554443 3667
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcc
Q 042986 1135 SSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGA 1214 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~ 1214 (1485)
++|++|++++|. ++.++ ...+++|+.|+++++. +..+ ...+.|+.|+++++. +..
T Consensus 171 ~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n~-l~~l-----------~~~~~L~~L~ls~n~----------l~~- 225 (597)
T 3oja_B 171 TSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTL-----------AIPIAVEELDASHNS----------INV- 225 (597)
T ss_dssp TTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSSC-CSEE-----------ECCTTCSEEECCSSC----------CCE-
T ss_pred CcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccCc-cccc-----------cCCchhheeeccCCc----------ccc-
Confidence 777777777775 33332 2234456666555542 1111 112234445544432 211
Q ss_pred cccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCc
Q 042986 1215 LDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGL 1294 (1485)
Q Consensus 1215 l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~ 1294 (1485)
+ .+..+++|+.|++++|...+ +..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|. +..+|..+.
T Consensus 226 ~----~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 298 (597)
T 3oja_B 226 V----RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ 298 (597)
T ss_dssp E----ECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSS
T ss_pred c----ccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccc
Confidence 1 11223468888888876655 3557777888888888887777777777778888888888774 555666666
Q ss_pred CccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCC
Q 042986 1295 LSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1295 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 1357 (1485)
.+++|++|++++|. +..+|..+..+++|+.|++++|+. ..++. ...++|+.|++++|+.
T Consensus 299 ~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~--~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 299 PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLKL--STHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCCCC--CTTCCCSEEECCSSCE
T ss_pred cCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC-CCcCh--hhcCCCCEEEeeCCCC
Confidence 67778888887754 456666666777777777777653 22331 1235666666666654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.9e-20 Score=230.93 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=91.4
Q ss_pred cCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccc
Q 042986 1221 GNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLK 1300 (1485)
Q Consensus 1221 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~ 1300 (1485)
+.++ +|++|++++|...+..|..|..+++|+.|+|++|.+.+ +|..+..+++|++|+|++|. +..+|..+..+++|+
T Consensus 251 ~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 251 LNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp GGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred ccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 3444 59999999999888889999999999999999988766 56677889999999999995 557887778889999
Q ss_pred eEEEccccCccccccCCCCCCccCEEEeeCCCC
Q 042986 1301 RLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPS 1333 (1485)
Q Consensus 1301 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~ 1333 (1485)
+|++++|. +..+| +..+++|+.|++++|+.
T Consensus 328 ~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 328 NLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred EEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 99999976 55554 67889999999999874
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.5e-19 Score=209.12 Aligned_cols=94 Identities=22% Similarity=0.368 Sum_probs=86.3
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
....+++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++.+|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999 67799999999999999999
Q ss_pred cCCCCcccccccccC
Q 042986 704 SDTDSLEEMPLGIGK 718 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~ 718 (1485)
++|+....+|..++.
T Consensus 158 ~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 158 RACPELTELPEPLAS 172 (328)
T ss_dssp EEETTCCCCCSCSEE
T ss_pred CCCCCccccChhHhh
Confidence 998877888865543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.9e-18 Score=201.24 Aligned_cols=293 Identities=13% Similarity=0.097 Sum_probs=167.9
Q ss_pred cccccccccccccCCCcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhcccc
Q 042986 982 SQLYKDISNQMFLGGPLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLS 1061 (1485)
Q Consensus 982 ~L~~l~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~ 1061 (1485)
+++.++++++.+...+. ...+.|+.|+++++.. +.+.. ..+..+
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i-~~~~~----------------------------------~~~~~l 75 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKI-TEIKD----------------------------------GDFKNL 75 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCC-CCBCT----------------------------------TTTTTC
T ss_pred CCeEEEecCCCccccCc-cCCCCCeEEECCCCcC-CEeCh----------------------------------hhhccC
Confidence 45566666666554432 1236788888887642 22211 146678
Q ss_pred ccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEE
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILD 1141 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 1141 (1485)
++|++|++++|.+.+..|..+.++++|++|++++|. ++.+|... .++|++|++++|......+.. +.++++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-PKTLQELRVHENEITKVRKSV--FNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-CTTCCEEECCSSCCCBBCHHH--HTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-cccccEEECCCCcccccCHhH--hcCCccccEEE
Confidence 899999999999887778899999999999999985 44666544 378999999999866554443 47889999999
Q ss_pred EecCCCCcc-cc--CCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccc
Q 042986 1142 IRHCHSLTY-VA--GVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHL 1218 (1485)
Q Consensus 1142 l~~c~~l~~-~~--~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~ 1218 (1485)
+++|..... .. .....++|+.|+++++. +. .++.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-----------------------------------------l~-~l~~- 188 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN-----------------------------------------IT-TIPQ- 188 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-----------------------------------------CC-SCCS-
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCc-----------------------------------------cc-cCCc-
Confidence 998863210 00 01112222222222221 00 0010
Q ss_pred cccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccc
Q 042986 1219 VVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAK 1298 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~ 1298 (1485)
.++++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++
T Consensus 189 ---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~ 264 (330)
T 1xku_A 189 ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKY 264 (330)
T ss_dssp ---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSS
T ss_pred ---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCC
Confidence 011346666666665554445555566666666666665555544455555666666666652 3345555555555
Q ss_pred cceEEEccccCccccccC-CCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCc-cccccCcCCccccccce
Q 042986 1299 LKRLVIGGCKKLEALPLG-MHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWK-SLTESGGFHRLTSLRRL 1376 (1485)
Q Consensus 1299 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L 1376 (1485)
|++|++++|. ++.++.. +.... ......+|+.|++++|+... .+++ ..|..+.+|+.+
T Consensus 265 L~~L~l~~N~-i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l 324 (330)
T 1xku_A 265 IQVVYLHNNN-ISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAV 324 (330)
T ss_dssp CCEEECCSSC-CCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGE
T ss_pred cCEEECCCCc-CCccChhhcCCcc------------------cccccccccceEeecCcccccccCc-cccccccceeEE
Confidence 5555555533 3333221 11000 00012567777888777643 2222 357788888888
Q ss_pred eeccc
Q 042986 1377 AISGC 1381 (1485)
Q Consensus 1377 ~l~~n 1381 (1485)
++++|
T Consensus 325 ~L~~N 329 (330)
T 1xku_A 325 QLGNY 329 (330)
T ss_dssp EC---
T ss_pred Eeccc
Confidence 88887
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.5e-18 Score=202.23 Aligned_cols=294 Identities=16% Similarity=0.097 Sum_probs=168.5
Q ss_pred cccccccccccccCCCcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhhhhhhhhhcccc
Q 042986 982 SQLYKDISNQMFLGGPLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLS 1061 (1485)
Q Consensus 982 ~L~~l~ls~n~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~ 1061 (1485)
.++.++++++.+...+. ...++|+.|+++++.. ..+.. ..+..+
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i-~~~~~----------------------------------~~~~~l 77 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDI-SELRK----------------------------------DDFKGL 77 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCC-CEECT----------------------------------TTTTTC
T ss_pred cCCEEECCCCCccccCC-CCCCCCeEEECCCCcC-CccCH----------------------------------hHhhCC
Confidence 34555666665554432 1246888888887642 22211 146778
Q ss_pred ccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEE
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILD 1141 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 1141 (1485)
++|++|++++|.+....|..+.++++|++|++++|.. +.+|.... ++|++|++++|......+.. +.++++|++|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP-SSLVELRIHDNRIRKVPKGV--FSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC-TTCCEEECCSSCCCCCCSGG--GSSCSSCCEEE
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc-ccCCEEECCCCccCccCHhH--hCCCccCCEEE
Confidence 8999999999998887888999999999999999954 46766544 89999999999866544433 47899999999
Q ss_pred EecCCCCcc-ccCCCCC-CCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccc
Q 042986 1142 IRHCHSLTY-VAGVQLP-PSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLV 1219 (1485)
Q Consensus 1142 l~~c~~l~~-~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~ 1219 (1485)
+++|..-.. .....+. .+|+.|+++++. +.+ ++.
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~-----------------------------------------l~~-l~~-- 189 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAK-----------------------------------------LTG-IPK-- 189 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSB-----------------------------------------CSS-CCS--
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCC-----------------------------------------CCc-cCc--
Confidence 999873210 1000000 022222222211 110 111
Q ss_pred ccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcccc
Q 042986 1220 VGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKL 1299 (1485)
Q Consensus 1220 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L 1299 (1485)
.++++|++|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|
T Consensus 190 --~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 190 --DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLL 266 (332)
T ss_dssp --SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTC
T ss_pred --cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccC
Confidence 111346666666665554444555556666666666655555444455555566666665552 33455555555555
Q ss_pred ceEEEccccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCc-cccccCcCCcccccccee
Q 042986 1300 KRLVIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWK-SLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1300 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~ 1377 (1485)
++|++++|. ++.++. .+.... ......+|+.|++++|+... .+++ ..|..+++|+.|+
T Consensus 267 ~~L~l~~N~-l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 267 QVVYLHTNN-ITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQ 326 (332)
T ss_dssp CEEECCSSC-CCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEE
T ss_pred CEEECCCCC-CCccChhHccccc------------------cccccccccceEeecCcccccccCc-ccccccchhhhhh
Confidence 555555532 333321 111100 00013567788888887652 2222 4578899999999
Q ss_pred ecccc
Q 042986 1378 ISGCD 1382 (1485)
Q Consensus 1378 l~~n~ 1382 (1485)
+++|.
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 98874
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3e-19 Score=205.48 Aligned_cols=248 Identities=15% Similarity=0.070 Sum_probs=125.5
Q ss_pred ccccEEEecccCccc--cccccccCCCCcceEeecc-CCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCc
Q 042986 1062 CRLERLELRDCQDLV--KLPKSLLSLSSLTEIRIHN-CSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSL 1137 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~--~l~~~l~~l~~L~~L~L~~-~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 1137 (1485)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.....+|..+ .+++|++|++++|.....+|.. +.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH--HhCCCCC
Confidence 578999999999887 7888899999999999985 65444555322 2355666666655554444443 2455555
Q ss_pred cEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccc
Q 042986 1138 EILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDH 1217 (1485)
Q Consensus 1138 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~ 1217 (1485)
++|++++|.....++ .
T Consensus 128 ~~L~Ls~N~l~~~~p-----~----------------------------------------------------------- 143 (313)
T 1ogq_A 128 VTLDFSYNALSGTLP-----P----------------------------------------------------------- 143 (313)
T ss_dssp CEEECCSSEEESCCC-----G-----------------------------------------------------------
T ss_pred CEEeCCCCccCCcCC-----h-----------------------------------------------------------
Confidence 555555553110000 0
Q ss_pred ccccCCcccccEEEEeccCCcchHHhhcccCC-CccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCc
Q 042986 1218 LVVGNLPQALKFLSIWHCSRLESIVERLDNNT-SLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLS 1296 (1485)
Q Consensus 1218 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~ 1296 (1485)
.++.+ ++|++|++++|...+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |++|++++|......|..+..+
T Consensus 144 -~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 144 -SISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp -GGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT
T ss_pred -HHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC
Confidence 00111 1244555555444444444444444 555555555554444444444444 5555555553333334444444
Q ss_pred cccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccce
Q 042986 1297 AKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRL 1376 (1485)
Q Consensus 1297 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 1376 (1485)
++|++|++++|......| .+..+++|++|++++|.....+|......++|++|++++|.....+|. ...+++|+.|
T Consensus 221 ~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l 296 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVS 296 (313)
T ss_dssp SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGG
T ss_pred CCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC---CccccccChH
Confidence 455555555543222222 244444455555544433323333222234455555555544434443 2455555555
Q ss_pred eecccc
Q 042986 1377 AISGCD 1382 (1485)
Q Consensus 1377 ~l~~n~ 1382 (1485)
++++|+
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 555554
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2.5e-17 Score=191.78 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=109.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCcc--ccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLK--ILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLV 1303 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~ 1303 (1485)
+|++|++++|......+..+.++++|+.|++++|.+.. ..+..+..+++|++|++++|. +..+|..+. ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEE
Confidence 47777888777766666777888888888888887743 556677788888888888884 555665543 6888888
Q ss_pred EccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1304 IGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1304 l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+++|......|..+.++++|+.|++++|......+......++|++|++++|... .+|. .+..+++|++|++++|.+
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~--~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG--GLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT--TTTTCSSCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh--hhccCCCcCEEECCCCcC
Confidence 8887644444667778888888888887544333323333578888888888654 4444 367888888888888874
Q ss_pred c
Q 042986 1384 R 1384 (1485)
Q Consensus 1384 ~ 1384 (1485)
.
T Consensus 276 ~ 276 (330)
T 1xku_A 276 S 276 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.2e-18 Score=196.94 Aligned_cols=232 Identities=25% Similarity=0.345 Sum_probs=151.6
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
.++++.|++++|.+. .+|..+..+++|++|++++|... .+|..+ .+++|++|++++|... .+|.. +.++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~--l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS--IASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG--GGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH--HhcCcCCCE
Confidence 578999999998876 77888888999999999999655 666533 4578888888888765 55654 467888888
Q ss_pred EEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccc
Q 042986 1140 LDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLV 1219 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~ 1219 (1485)
|++++|.....++ ..+....+ .+.
T Consensus 155 L~L~~n~~~~~~p-----~~~~~~~~----------------------------------------------~~~----- 178 (328)
T 4fcg_A 155 LSIRACPELTELP-----EPLASTDA----------------------------------------------SGE----- 178 (328)
T ss_dssp EEEEEETTCCCCC-----SCSEEEC-----------------------------------------------CCC-----
T ss_pred EECCCCCCccccC-----hhHhhccc----------------------------------------------hhh-----
Confidence 8888876444332 11111100 000
Q ss_pred ccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcccc
Q 042986 1220 VGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKL 1299 (1485)
Q Consensus 1220 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L 1299 (1485)
++.+ ++|++|++++|... .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.....+|..+..+++|
T Consensus 179 ~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 179 HQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp EEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 1112 24777777777544 566667777777777777766553 44456667777777777776666666666666667
Q ss_pred ceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeec
Q 042986 1300 KRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAIS 1379 (1485)
Q Consensus 1300 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 1379 (1485)
++|++++|+.++.+|..+.++++|++|++++|+.+. .+|. .+.++++|+.+++.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------------------------~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS------------------------RLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC------------------------CCCG--GGGGSCTTCEEECC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh------------------------hccH--HHhhccCceEEeCC
Confidence 777777666666666666665555555555555444 4443 36677777777777
Q ss_pred ccc
Q 042986 1380 GCD 1382 (1485)
Q Consensus 1380 ~n~ 1382 (1485)
.+.
T Consensus 310 ~~~ 312 (328)
T 4fcg_A 310 PHL 312 (328)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=1.7e-17 Score=193.24 Aligned_cols=242 Identities=18% Similarity=0.149 Sum_probs=154.1
Q ss_pred ccccEEEecccCccccccccccCCCCcceEeeccCCCccccCC-CCCCCCCCEEEEecCCCCCcCccccccCCCCCccEE
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPD-AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEIL 1140 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 1140 (1485)
.+++.++++++.+. .+|..+ .++|+.|++++|......+. ...+++|++|++++|......+.. +.++++|++|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--STTCTTCCEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH--hhCcCCCCEE
Confidence 35777777776654 455443 25677777777754322221 223466667777666655444443 3566666666
Q ss_pred EEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccc
Q 042986 1141 DIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVV 1220 (1485)
Q Consensus 1141 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~ 1220 (1485)
++++|. ++.++..
T Consensus 108 ~L~~n~-l~~l~~~------------------------------------------------------------------ 120 (332)
T 2ft3_A 108 YISKNH-LVEIPPN------------------------------------------------------------------ 120 (332)
T ss_dssp ECCSSC-CCSCCSS------------------------------------------------------------------
T ss_pred ECCCCc-CCccCcc------------------------------------------------------------------
Confidence 666664 1111100
Q ss_pred cCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCc--cccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccc
Q 042986 1221 GNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENL--KILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAK 1298 (1485)
Q Consensus 1221 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~ 1298 (1485)
++++|++|++++|......+..+..+++|+.|++++|.+. +..+..+..+ +|++|++++|. +..+|..+. ++
T Consensus 121 --~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~ 194 (332)
T 2ft3_A 121 --LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ET 194 (332)
T ss_dssp --CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SS
T ss_pred --ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CC
Confidence 0024777777777665555556778888888888888774 3556667677 88888888884 555666543 57
Q ss_pred cceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceee
Q 042986 1299 LKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAI 1378 (1485)
Q Consensus 1299 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 1378 (1485)
|++|++++|......+..+.++++|+.|++++|......+......++|++|++++|... .+|. .+..+++|++|++
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~--~l~~l~~L~~L~l 271 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA--GLPDLKLLQVVYL 271 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT--TGGGCTTCCEEEC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh--hhhcCccCCEEEC
Confidence 888888886544444467778888888888887543332222334578888888888664 4554 3778888999999
Q ss_pred cccccc
Q 042986 1379 SGCDER 1384 (1485)
Q Consensus 1379 ~~n~~~ 1384 (1485)
++|.+.
T Consensus 272 ~~N~l~ 277 (332)
T 2ft3_A 272 HTNNIT 277 (332)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 988743
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=1.1e-18 Score=200.77 Aligned_cols=231 Identities=13% Similarity=0.052 Sum_probs=136.6
Q ss_pred hccccccccEEEecc-cCccccccccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRD-CQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~-~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.....+|..+ .+++|++|++++|.....+|.. +..+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l 148 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS--ISSL 148 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG--GGGC
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH--HhcC
Confidence 466788999999995 88888899999999999999999997766666533 4689999999999987777766 4789
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcc
Q 042986 1135 SSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGA 1214 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~ 1214 (1485)
++|++|++++|.....++..
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~------------------------------------------------------------ 168 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDS------------------------------------------------------------ 168 (313)
T ss_dssp TTCCEEECCSSCCEEECCGG------------------------------------------------------------
T ss_pred CCCCeEECcCCcccCcCCHH------------------------------------------------------------
Confidence 99999999998732122110
Q ss_pred cccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCc
Q 042986 1215 LDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGL 1294 (1485)
Q Consensus 1215 l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~ 1294 (1485)
++.++++|++|++++|...+.+|..+..++ |+.|++++|.+.+..|..+..+++|++|++++|.....+|. +.
T Consensus 169 -----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 169 -----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp -----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred -----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence 011111344444444444444444444444 55555555544444444455555555555555533222222 33
Q ss_pred CccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCC
Q 042986 1295 LSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1295 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 1357 (1485)
.+++|++|++++|.....+|..+..+++|+.|++++|+....+|.. ...++|+.|++++|+.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 3445555555554433344444555555555555554433333333 1234455555555543
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3.5e-17 Score=203.38 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeecc
Q 042986 625 LQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNS 704 (1485)
Q Consensus 625 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 704 (1485)
...+++|++++|.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++| .+..+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 3468999999999999998886 799999999999999988 6789999999999 5778887 77899999999
Q ss_pred CCCCcccccc
Q 042986 705 DTDSLEEMPL 714 (1485)
Q Consensus 705 ~~~~l~~~p~ 714 (1485)
+|. +..+|.
T Consensus 110 ~N~-l~~l~~ 118 (622)
T 3g06_A 110 SNP-LTHLPA 118 (622)
T ss_dssp SCC-CCCCCC
T ss_pred CCc-CCCCCC
Confidence 887 666664
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.5e-18 Score=220.92 Aligned_cols=366 Identities=16% Similarity=0.101 Sum_probs=210.7
Q ss_pred ceEEEEecCCCceeecc----CccccccccccccccccCCC------cccCCCCCceEEeccCCCccccccchhhhhhhh
Q 042986 961 LCKLRIDRCKKVVWRST----TDCGSQLYKDISNQMFLGGP------LKLHLPKLEELDISIIDELTYIWQNETQLLRDI 1030 (1485)
Q Consensus 961 L~~L~l~~~~~~~~~~~----~~l~~L~~l~ls~n~~~~~~------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 1030 (1485)
|++|++++|.......+ ..+++|+.|++++|.+.+.+ ....+++|+.|+++++..-. +.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~-~~---------- 208 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-IS---------- 208 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS-CC----------
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc-cC----------
Confidence 66666666653322222 25566777777776654432 23467788888887654210 00
Q ss_pred hhhcchhhcccccchhhhhhhhhhhhhccccccccEEEecccCccccccccccCCCCcceEeeccCCCccc----cCCCC
Q 042986 1031 VTLRRLKIERIPKLLFSVAEEEKDQWQFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVS----FPDAV 1106 (1485)
Q Consensus 1031 ~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~----~~~~~ 1106 (1485)
.......+..+++|++|++++|.+.+ ++..+..+++|++|+++++..... .....
T Consensus 209 --------------------~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 209 --------------------PKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp --------------------HHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred --------------------HHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 00011134456788888888877654 667778888888888875432211 11223
Q ss_pred CCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCcccc---CCCCCCCCceEEEecCCCccccccccCCCCC
Q 042986 1107 LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVA---GVQLPPSLKQLEIYSCDNIRTLTVEEGDHNS 1183 (1485)
Q Consensus 1107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~ 1183 (1485)
.+++|+.|.++++. ...++.. +..+++|++|++++|. +.... ....+++|+.|++.++-.-..+. .
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-------~ 336 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLE-------V 336 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-------H
T ss_pred ccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHH-------H
Confidence 45788888887753 3333432 4567888888888887 43221 12456678888877432111110 1
Q ss_pred cccccccccEEeeec----------CCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHhhccc-CCCcc
Q 042986 1184 SRRHTSLLEFLEIHS----------CPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDN-NTSLE 1252 (1485)
Q Consensus 1184 ~~~~~~~L~~l~i~~----------c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~ 1252 (1485)
....+++|+.|++.+ |..++.. .+.. ....+ ++|++|+++.+......+..+.. +++|+
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~--------~~~~-l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQR--------GLIA-LAQGC-QELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH--------HHHH-HHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHH--------HHHH-HHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 112345588888874 5555422 1111 01223 35999999777766666666654 88999
Q ss_pred EEEeec---CCCccc------cCcCCCCCCCcCEEEeeCCCC-C-cc-cCCCCcCccccceEEEccccCcc-ccccCCCC
Q 042986 1253 VIEIVS---CENLKI------LPHGLHKLWRLQEIDIHGCEN-L-VS-FPEGGLLSAKLKRLVIGGCKKLE-ALPLGMHH 1319 (1485)
Q Consensus 1253 ~L~L~~---~~~~~~------l~~~l~~l~~L~~L~L~~~~~-l-~~-~p~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~ 1319 (1485)
.|++++ |+.++. ++..+.++++|++|++++|.. + .. +......+++|++|++++|.... .++..+.+
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 999974 334443 233356688999999987652 1 11 11112236789999999876332 34445567
Q ss_pred CCccCEEEeeCCCCCcc--ccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1320 LTCLQHLTIGGVPSLLC--FTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1320 l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
+++|+.|++++|+ +.. ++......++|++|++++|+. +..........++.|....+..+
T Consensus 487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBC-CTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcC-CHHHHHHHHHhCCCcEEEEecCc
Confidence 8899999999987 331 111111247889999999883 32222122345666666555543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.2e-18 Score=221.87 Aligned_cols=304 Identities=15% Similarity=0.056 Sum_probs=135.1
Q ss_pred cccccccEEEecccCcc----ccccccccCCCCcceEeeccCCCccccCCC-CCCCCCCEEEEecCCCCCc-CccccccC
Q 042986 1059 GLSCRLERLELRDCQDL----VKLPKSLLSLSSLTEIRIHNCSSLVSFPDA-VLPSQLRVISIWDCGALKF-LPDAWMLD 1132 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~----~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~-~~~~~~~~ 1132 (1485)
..+++|++|++++|.+. ..++..+.++++|++|++++|.... ++.. ...++|+.|+++.+..... .+....+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 34567777777777664 2345555667777777777764332 2211 1246677777765332211 11111134
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCC
Q 042986 1133 NNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELP 1212 (1485)
Q Consensus 1133 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~ 1212 (1485)
.+++|+.|+++++...........+++|++|++++|. +....... ....+++|+.|++.++ +. .
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~-----~~~~~~~L~~L~L~~~--~~--------~ 331 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCT-----LIQKCPNLEVLETRNV--IG--------D 331 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHH-----HHTTCTTCCEEEEEGG--GH--------H
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHH-----HHHhCcCCCEEeccCc--cC--------H
Confidence 5666777776664321111112234456666666655 22111100 0112233444444311 00 0
Q ss_pred cccccccccCCcccccEEEEec----------cCCcc--hHHhhcccCCCccEEEeecCCCccccCcCCCC-CCCcCEEE
Q 042986 1213 GALDHLVVGNLPQALKFLSIWH----------CSRLE--SIVERLDNNTSLEVIEIVSCENLKILPHGLHK-LWRLQEID 1279 (1485)
Q Consensus 1213 ~~l~~~~~~~l~~~L~~L~l~~----------~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~-l~~L~~L~ 1279 (1485)
+.++. ....++ +|++|++++ |...+ .++.....+++|+.|+++.|.+....+..+.. +++|++|+
T Consensus 332 ~~l~~-~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 332 RGLEV-LAQYCK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HHHHH-HHHHCT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred HHHHH-HHHhCC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 01111 111222 366666663 33333 12333445666666666554444433333332 56666666
Q ss_pred eeC---CCCCcccCC------CCcCccccceEEEccccC-cc-ccccCC-CCCCccCEEEeeCCCCCc-cccCCCCCCCC
Q 042986 1280 IHG---CENLVSFPE------GGLLSAKLKRLVIGGCKK-LE-ALPLGM-HHLTCLQHLTIGGVPSLL-CFTEDGMFPTN 1346 (1485)
Q Consensus 1280 L~~---~~~l~~~p~------~~~~~~~L~~L~l~~c~~-l~-~l~~~~-~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~ 1346 (1485)
+++ |..++..|. .+..+++|++|++++|.. ++ ..+..+ ..+++|+.|++++|..-. .++......++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 653 223332221 123355666666655432 11 111111 235556666666554221 11111112355
Q ss_pred cceEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1347 LHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1347 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
|++|++++|+. +.......+..+++|++|++++|.
T Consensus 490 L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 490 LQKLEMRGCCF-SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCCC-BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCeeeccCCCC-cHHHHHHHHHhcCccCeeECcCCc
Confidence 66666666662 211111123455666666666665
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=7.3e-16 Score=191.56 Aligned_cols=258 Identities=24% Similarity=0.289 Sum_probs=193.0
Q ss_pred ccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEE
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILD 1141 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 1141 (1485)
.+++.|++++|.+. .+|..+. ++|+.|++++|. ++.+|. .+++|++|++++|... .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEE
Confidence 35899999998876 6676554 799999999995 557776 5789999999999854 4554 578999999
Q ss_pred EecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccccc
Q 042986 1142 IRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVG 1221 (1485)
Q Consensus 1142 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~ 1221 (1485)
+++|. ++.++. .+++|+.|++++|. ++.++. .+++|+.|+++++ .++.+ +
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N~-l~~lp~----------~l~~L~~L~Ls~N-~l~~l----------~----- 157 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSLPV----------LPPGLQELSVSDN-QLASL----------P----- 157 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSSC-CSCCCC----------CCTTCCEEECCSS-CCSCC----------C-----
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCCC-CCcCCC----------CCCCCCEEECcCC-cCCCc----------C-----
Confidence 99986 555554 66789999888774 444432 1245777776654 22211 1
Q ss_pred CCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccce
Q 042986 1222 NLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKR 1301 (1485)
Q Consensus 1222 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~ 1301 (1485)
..+.+|+.|++++|.... +| ..+++|+.|++++|.+.+ +|.. +++|+.|++++| .+..+|.. +++|++
T Consensus 158 ~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 158 ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKE 225 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCE
T ss_pred CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCC-cccccCCC---CCCCCE
Confidence 133569999999987654 55 567899999999988654 5543 579999999999 46667753 478999
Q ss_pred EEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1302 LVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1302 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
|++++| .++.+| ..+++|+.|++++| .+..+|. .+++|+.|++++|... .+|. .+.++++|+.|+|++|
T Consensus 226 L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~--~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 226 LIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPE--SLIHLSSETTVNLEGN 294 (622)
T ss_dssp EECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCG--GGGGSCTTCEEECCSC
T ss_pred EEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCH--HHhhccccCEEEecCC
Confidence 999996 567777 45688999999997 5556765 5689999999999765 5555 4889999999999999
Q ss_pred ccc
Q 042986 1382 DER 1384 (1485)
Q Consensus 1382 ~~~ 1384 (1485)
++.
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.8e-17 Score=189.70 Aligned_cols=243 Identities=13% Similarity=0.073 Sum_probs=167.9
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSS 1136 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 1136 (1485)
.+..+++|++|++++|.+....|..+..+++|++|++++|......+ ...+++|++|++++|.... ++ ..++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~------~~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL------VGPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE------ECTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc------CCCC
Confidence 34557789999999999887777889999999999999986543332 3334555555555554221 11 1244
Q ss_pred ccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccc
Q 042986 1137 LEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALD 1216 (1485)
Q Consensus 1137 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~ 1216 (1485)
|++|++++|. + ..+..
T Consensus 101 L~~L~l~~n~-l-------------------------------------------~~~~~-------------------- 116 (317)
T 3o53_A 101 IETLHAANNN-I-------------------------------------------SRVSC-------------------- 116 (317)
T ss_dssp CCEEECCSSC-C-------------------------------------------SEEEE--------------------
T ss_pred cCEEECCCCc-c-------------------------------------------CCcCc--------------------
Confidence 4455544443 1 11100
Q ss_pred cccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCC-CCCCCcCEEEeeCCCCCcccCCCCcC
Q 042986 1217 HLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGL-HKLWRLQEIDIHGCENLVSFPEGGLL 1295 (1485)
Q Consensus 1217 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~l~~~p~~~~~ 1295 (1485)
..+ ++|++|++++|......+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|. +..++... .
T Consensus 117 ----~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~ 189 (317)
T 3o53_A 117 ----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-V 189 (317)
T ss_dssp ----CCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-C
T ss_pred ----ccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-c
Confidence 011 248888888887777667778888899999999888877666555 468889999999885 54555433 4
Q ss_pred ccccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCC-ccccccCcCCcccccc
Q 042986 1296 SAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIW-KSLTESGGFHRLTSLR 1374 (1485)
Q Consensus 1296 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~ 1374 (1485)
+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|......++|+.|++++|+.. ..++. .+..+++|+
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~ 265 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQ 265 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHH
T ss_pred cccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHH--HHhccccce
Confidence 778999999885 466676678888899999998874 4466666555688899999988876 33333 467788999
Q ss_pred ceeecccc
Q 042986 1375 RLAISGCD 1382 (1485)
Q Consensus 1375 ~L~l~~n~ 1382 (1485)
.|++++|.
T Consensus 266 ~l~l~~~~ 273 (317)
T 3o53_A 266 TVAKQTVK 273 (317)
T ss_dssp HHHHHHHH
T ss_pred EEECCCch
Confidence 99998765
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.7e-19 Score=217.81 Aligned_cols=377 Identities=15% Similarity=0.066 Sum_probs=213.9
Q ss_pred CCcceEEEEecCCCce--eec-cCccccccccccccccccCC------CcccCCCCCceEEeccCCCccccccchhhhhh
Q 042986 958 LPALCKLRIDRCKKVV--WRS-TTDCGSQLYKDISNQMFLGG------PLKLHLPKLEELDISIIDELTYIWQNETQLLR 1028 (1485)
Q Consensus 958 l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~l~ls~n~~~~~------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 1028 (1485)
.++|++|+++++.... +.. +..+++|+.+++++|.+... ..+..+++|++|+++++..-..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~---------- 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV---------- 71 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH----------
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH----------
Confidence 3577888887776322 111 45667777777777776532 2334567777777776542110
Q ss_pred hhhhhcchhhcccccchhhhhhhhhhhhhccccc----cccEEEecccCccc----cccccccCCCCcceEeeccCCCcc
Q 042986 1029 DIVTLRRLKIERIPKLLFSVAEEEKDQWQFGLSC----RLERLELRDCQDLV----KLPKSLLSLSSLTEIRIHNCSSLV 1100 (1485)
Q Consensus 1029 ~~~~L~~L~i~~l~~~~~~~~~~~~~~~~~~~~~----~L~~L~Ls~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~ 1100 (1485)
.....+..++ +|++|++++|.+.. .++..+..+++|++|++++|....
T Consensus 72 ------------------------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 72 ------------------------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp ------------------------HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred ------------------------HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 0000112222 69999999998773 467788899999999999986432
Q ss_pred ccCC------CCCCCCCCEEEEecCCCCCcC----ccccccCCCCCccEEEEecCCCCccccCCC-------CCCCCceE
Q 042986 1101 SFPD------AVLPSQLRVISIWDCGALKFL----PDAWMLDNNSSLEILDIRHCHSLTYVAGVQ-------LPPSLKQL 1163 (1485)
Q Consensus 1101 ~~~~------~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-------~~~~L~~L 1163 (1485)
..+. ....++|++|++++|...... +.. +..+++|++|++++|. +....... ..++|+.|
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH--HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEE
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH--HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEE
Confidence 1111 111357899999888755432 222 3457888889888887 33221111 12356666
Q ss_pred EEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchH--
Q 042986 1164 EIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESI-- 1241 (1485)
Q Consensus 1164 ~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~-- 1241 (1485)
++++|. +..... ..++.. +..+ ++|++|++++|......
T Consensus 205 ~L~~n~-l~~~~~------------------------------------~~l~~~-l~~~-~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 205 KLESCG-VTSDNC------------------------------------RDLCGI-VASK-ASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp ECTTSC-CBTTHH------------------------------------HHHHHH-HHHC-TTCCEEECCSSBCHHHHHH
T ss_pred EccCCC-CcHHHH------------------------------------HHHHHH-HHhC-CCccEEeccCCcCChHHHH
Confidence 655552 111000 000000 1112 24788888887654432
Q ss_pred ---HhhcccCCCccEEEeecCCCccc----cCcCCCCCCCcCEEEeeCCCCCcccCCCC-----cCccccceEEEccccC
Q 042986 1242 ---VERLDNNTSLEVIEIVSCENLKI----LPHGLHKLWRLQEIDIHGCENLVSFPEGG-----LLSAKLKRLVIGGCKK 1309 (1485)
Q Consensus 1242 ---~~~~~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~~l~~~p~~~-----~~~~~L~~L~l~~c~~ 1309 (1485)
+..+..+++|+.|++++|.+... ++..+..+++|++|++++|......+..+ ...++|++|++++|..
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22334578888888888866553 55566677888888888885322111111 1225788888888764
Q ss_pred ccc----cccCCCCCCccCEEEeeCCCCCccccC----CC-CCCCCcceEEeCCCCCCc----cccccCcCCccccccce
Q 042986 1310 LEA----LPLGMHHLTCLQHLTIGGVPSLLCFTE----DG-MFPTNLHSLEIDGMKIWK----SLTESGGFHRLTSLRRL 1376 (1485)
Q Consensus 1310 l~~----l~~~~~~l~~L~~L~l~~~~~l~~~~~----~~-~~~~~L~~L~l~~~~~~~----~~~~~~~~~~l~~L~~L 1376 (1485)
... ++..+..+++|++|++++|..-...+. .. ...++|++|++++|.... .++. .+..+++|++|
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L 403 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--TLLANHSLREL 403 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCCCCCEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--HHHhCCCccEE
Confidence 332 344566678888888888743221111 00 013588899998887643 3333 36678899999
Q ss_pred eecccccccccccccccccccCCCCCccceeecccCCC
Q 042986 1377 AISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPN 1414 (1485)
Q Consensus 1377 ~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 1414 (1485)
++++|.+........ .........+|+.|.+.++..
T Consensus 404 ~l~~N~i~~~~~~~l--~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 404 DLSNNCLGDAGILQL--VESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp ECCSSSCCHHHHHHH--HHHHTSTTCCCCEEECTTCCC
T ss_pred ECCCCCCCHHHHHHH--HHHhccCCcchhheeeccccc
Confidence 999987542110000 000011223688887776553
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=185.86 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=103.2
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCC--CCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDA--VLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
.++++.|+|++|.+....+..|.++++|++|+|++|... .++.. ..+++|++|++++|......+.. +..+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGA--FVYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTT--SCSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhH--hhccccCc
Confidence 357888888888877766777888888888888887543 33211 12345555555555433222221 24445555
Q ss_pred EEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccc
Q 042986 1139 ILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHL 1218 (1485)
Q Consensus 1139 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~ 1218 (1485)
+|++++|. +..++ ..
T Consensus 140 ~L~L~~N~-i~~~~----------------------------------------------------------------~~ 154 (440)
T 3zyj_A 140 ELWLRNNP-IESIP----------------------------------------------------------------SY 154 (440)
T ss_dssp EEECCSCC-CCEEC----------------------------------------------------------------TT
T ss_pred eeeCCCCc-ccccC----------------------------------------------------------------HH
Confidence 55554443 11000 00
Q ss_pred cccCCcccccEEEEeccCCcchHHh-hcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcc
Q 042986 1219 VVGNLPQALKFLSIWHCSRLESIVE-RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSA 1297 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~ 1297 (1485)
.+..+ ++|++|++++|...+.++. .|.++++|+.|++++|.+. .+| .+..+++|++|+|++|......|..+..++
T Consensus 155 ~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 155 AFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp TTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred HhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 01111 1366666666555444432 4555666666666655433 333 355555666666666543333344455555
Q ss_pred ccceEEEccccCccccccCCCCCCccCEEEeeCC
Q 042986 1298 KLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGV 1331 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 1331 (1485)
+|+.|++++|......+..+.++++|+.|+|++|
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 5666666554433333444555555555555554
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.2e-18 Score=221.93 Aligned_cols=154 Identities=11% Similarity=0.005 Sum_probs=78.6
Q ss_pred cccEEEEeccCCcchHHhhcc-cCCCccEEEee-----cCCCccccC------cCCCCCCCcCEEEeeCCCCCcccCCCC
Q 042986 1226 ALKFLSIWHCSRLESIVERLD-NNTSLEVIEIV-----SCENLKILP------HGLHKLWRLQEIDIHGCENLVSFPEGG 1293 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~-----~~~~~~~l~------~~l~~l~~L~~L~L~~~~~l~~~p~~~ 1293 (1485)
+|++|.+..+.........+. .+++|+.|+++ +|..++..| ..+..+++|++|+|+++ .....+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHHH
Confidence 477776655555444444443 57777777777 344444222 22455677777777652 221111111
Q ss_pred c-CccccceEEEccccCccccccCC-CCCCccCEEEeeCCCCCccccC-CCCCCCCcceEEeCCCCCCccccccCcCCcc
Q 042986 1294 L-LSAKLKRLVIGGCKKLEALPLGM-HHLTCLQHLTIGGVPSLLCFTE-DGMFPTNLHSLEIDGMKIWKSLTESGGFHRL 1370 (1485)
Q Consensus 1294 ~-~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 1370 (1485)
. .+++|++|++++|.........+ .++++|+.|++++|+....... .....++|+.|++++|+....-.. .....+
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~l 530 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK-LLGQKM 530 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH-HHHHHC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH-HHHHhC
Confidence 1 25677777777765322222122 4567788888877765221111 111236788888888876211100 111345
Q ss_pred ccccceeeccc
Q 042986 1371 TSLRRLAISGC 1381 (1485)
Q Consensus 1371 ~~L~~L~l~~n 1381 (1485)
++|+...+..+
T Consensus 531 p~l~i~~~~~~ 541 (594)
T 2p1m_B 531 PKLNVEVIDER 541 (594)
T ss_dssp TTEEEEEECSS
T ss_pred CCCEEEEecCC
Confidence 55555454443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=5.8e-16 Score=178.15 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=59.3
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCcc-ccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLK-ILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
|++|++++|......+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 5555555554444444445555555555555554443 344445555555555555553333334444444555555555
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCCC-CCCCcceEEeCCCCC
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGM-FPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~ 1357 (1485)
+|......+..+..+++|+.|++++|......+.... ++++|+.|++++|+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5432222222344445555555555433332222211 123444444444443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=1.5e-15 Score=185.04 Aligned_cols=224 Identities=18% Similarity=0.157 Sum_probs=148.1
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
+++|+.|+|++|++....+..|.++++|++|+|++|......+..+ .+++|++|++++|......+.. +..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--FEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT--SSSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh--hcccCCCCE
Confidence 4689999999999988888899999999999999996554333322 3689999999999866544433 478999999
Q ss_pred EEEecCCCCccccC--CCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccc
Q 042986 1140 LDIRHCHSLTYVAG--VQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDH 1217 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~ 1217 (1485)
|++++|. +..++. ....++|+.|++++|..+..++.
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------------------------------------- 189 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE----------------------------------------- 189 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------------------------------------
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----------------------------------------
Confidence 9999987 444432 22344555555555544433321
Q ss_pred ccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcc
Q 042986 1218 LVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSA 1297 (1485)
Q Consensus 1218 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~ 1297 (1485)
..+..++ +|++|++++|.... +| .+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|......+..+..++
T Consensus 190 ~~~~~l~-~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 190 GAFEGLF-NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp TTTTTCT-TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhccCCC-CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 1122222 36777777765443 23 366677777777777777666666777777777777777754444455566667
Q ss_pred ccceEEEccccCccccc-cCCCCCCccCEEEeeCCC
Q 042986 1298 KLKRLVIGGCKKLEALP-LGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~ 1332 (1485)
+|+.|++++|. ++.+| ..+..+++|+.|++++||
T Consensus 267 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 77777777754 34443 345566777777777665
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.7e-16 Score=194.03 Aligned_cols=240 Identities=13% Similarity=0.081 Sum_probs=167.8
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
..+++|+.|+|++|.+.+..|..+..+++|++|+|++|......| ...+++|+.|++++|.... ++ ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~------~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL------VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE------ECTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC------CCCCcC
Confidence 345689999999999988888899999999999999996554333 3445666666666664222 11 124455
Q ss_pred EEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccc
Q 042986 1139 ILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHL 1218 (1485)
Q Consensus 1139 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~ 1218 (1485)
+|++++|.. ..++
T Consensus 103 ~L~L~~N~l-~~~~------------------------------------------------------------------ 115 (487)
T 3oja_A 103 TLHAANNNI-SRVS------------------------------------------------------------------ 115 (487)
T ss_dssp EEECCSSCC-CCEE------------------------------------------------------------------
T ss_pred EEECcCCcC-CCCC------------------------------------------------------------------
Confidence 555555541 1000
Q ss_pred cccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCC-CCCCcCEEEeeCCCCCcccCCCCcCcc
Q 042986 1219 VVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLH-KLWRLQEIDIHGCENLVSFPEGGLLSA 1297 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~-~l~~L~~L~L~~~~~l~~~p~~~~~~~ 1297 (1485)
...+ ++|++|++++|...+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|+|++|. +..+|.. ..++
T Consensus 116 -~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l~ 191 (487)
T 3oja_A 116 -CSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFA 191 (487)
T ss_dssp -ECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCT
T ss_pred -cccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccCC
Confidence 0011 2488888888887777777788888899999988888887776665 68889999999885 4444443 3477
Q ss_pred ccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCC-ccccccCcCCccccccce
Q 042986 1298 KLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIW-KSLTESGGFHRLTSLRRL 1376 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L 1376 (1485)
+|++|++++|. ++.+|..+..+++|+.|++++|.. ..+|.....+++|+.|++++|+.. ..++. .+..++.|+.|
T Consensus 192 ~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l 267 (487)
T 3oja_A 192 KLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTV 267 (487)
T ss_dssp TCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHH
T ss_pred CCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEE
Confidence 89999998854 566666788888899999988654 456666555678889999888876 23333 36678888888
Q ss_pred eeccc
Q 042986 1377 AISGC 1381 (1485)
Q Consensus 1377 ~l~~n 1381 (1485)
+++.+
T Consensus 268 ~~~~~ 272 (487)
T 3oja_A 268 AKQTV 272 (487)
T ss_dssp HHHHH
T ss_pred ecccc
Confidence 88643
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=182.26 Aligned_cols=253 Identities=15% Similarity=0.071 Sum_probs=141.3
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCC-CCCCCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPD-AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
.++|++|++++|.+....+..+.++++|++|++++|......+. ...+++|++|++++|......+.. +.++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--FKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH--HTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH--hCCCccCCE
Confidence 35789999999887766566788899999999998855443333 223578888888888765433322 467888888
Q ss_pred EEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccc
Q 042986 1140 LDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLV 1219 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~ 1219 (1485)
|++++|. ++.++... .
T Consensus 129 L~L~~n~-l~~l~~~~---------------------------------------------------------------~ 144 (353)
T 2z80_A 129 LNLLGNP-YKTLGETS---------------------------------------------------------------L 144 (353)
T ss_dssp EECTTCC-CSSSCSSC---------------------------------------------------------------S
T ss_pred EECCCCC-CcccCchh---------------------------------------------------------------h
Confidence 8888875 22222100 0
Q ss_pred ccCCcccccEEEEeccCCcchH-HhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCC-cCcc
Q 042986 1220 VGNLPQALKFLSIWHCSRLESI-VERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGG-LLSA 1297 (1485)
Q Consensus 1220 ~~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~-~~~~ 1297 (1485)
+..+ ++|++|++++|...+.+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|. +..+|..+ ..++
T Consensus 145 ~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 222 (353)
T 2z80_A 145 FSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTS 222 (353)
T ss_dssp CTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTT
T ss_pred hccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcc
Confidence 1111 13555555555333322 3455566666666666666555555566666666666666663 33333321 2245
Q ss_pred ccceEEEccccCccccccC---CCCCCccCEEEeeCCCCCc----cccCCCCCCCCcceEEeCCCCCCccccccCcCCcc
Q 042986 1298 KLKRLVIGGCKKLEALPLG---MHHLTCLQHLTIGGVPSLL----CFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRL 1370 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~---~~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 1370 (1485)
+|++|++++|......+.. ....+.++.++++++..-. .+|......++|++|++++|... .++. ..|..+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~-~~~~~l 300 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD-GIFDRL 300 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT-TTTTTC
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH-HHHhcC
Confidence 6666666664322211111 1133455555555543211 12221122356677777666543 4443 345677
Q ss_pred ccccceeeccccc
Q 042986 1371 TSLRRLAISGCDE 1383 (1485)
Q Consensus 1371 ~~L~~L~l~~n~~ 1383 (1485)
++|++|++++|+.
T Consensus 301 ~~L~~L~L~~N~~ 313 (353)
T 2z80_A 301 TSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCEEECCSSCB
T ss_pred CCCCEEEeeCCCc
Confidence 7777777777763
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2.4e-16 Score=179.14 Aligned_cols=204 Identities=17% Similarity=0.122 Sum_probs=107.6
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC-CCCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV-LPSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
+++|++|++++|.+....+..+..+++|++|++++|......+..+ .+++|++|++++|..+..++... +..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCE
Confidence 4678888888887776666677778888888888775433223221 23556666665555333332111 344555555
Q ss_pred EEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccccc
Q 042986 1140 LDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLV 1219 (1485)
Q Consensus 1140 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~ 1219 (1485)
|++++|... .++. ..
T Consensus 110 L~l~~n~l~-~~~~----------------------------------------------------------------~~ 124 (285)
T 1ozn_A 110 LHLDRCGLQ-ELGP----------------------------------------------------------------GL 124 (285)
T ss_dssp EECTTSCCC-CCCT----------------------------------------------------------------TT
T ss_pred EECCCCcCC-EECH----------------------------------------------------------------hH
Confidence 555555411 0000 00
Q ss_pred ccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCcccc
Q 042986 1220 VGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKL 1299 (1485)
Q Consensus 1220 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L 1299 (1485)
+..+ ++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|......|..+..+++|
T Consensus 125 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 125 FRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 1111 135555555555444444445566666666666665554444445566666666666664444445555555666
Q ss_pred ceEEEccccCccccc-cCCCCCCccCEEEeeCCC
Q 042986 1300 KRLVIGGCKKLEALP-LGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1300 ~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~ 1332 (1485)
+.|++++|. ++.++ ..+..+++|+.|++++|+
T Consensus 204 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 204 MTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 666666643 22332 234555555555555554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=3.7e-15 Score=180.89 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=123.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCc-CCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPH-GLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l 1304 (1485)
+|++|++++|......+..|..+++|+.|++++|+.++.++. .+.++++|++|+|++| .+..+|. +..+++|++|++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-cCCCcccCEEEC
Confidence 599999999987766677889999999999999887777664 6888999999999999 4666774 677889999999
Q ss_pred ccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1305 GGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1305 ~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
++|......|..+.++++|+.|++++|......+......++|+.|++++|... .++. ..|..+++|+.|+|++|+.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH-DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCT-TTTSSCTTCCEEECCSSCE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccCh-hHhccccCCCEEEcCCCCc
Confidence 997655555778889999999999987655444444445689999999999765 4444 3578899999999999874
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=2.6e-15 Score=182.92 Aligned_cols=203 Identities=20% Similarity=0.162 Sum_probs=135.0
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCC--CCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--LPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.|..+++|++|+|++|.+....+..|.++++|++|+|++|... .++... .+++|++|++++|......+.. +.++
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l 170 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRV 170 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhH--HhcC
Confidence 3455666777777777666655666667777777777766433 343322 2466777777776644333222 4567
Q ss_pred CCccEEEEecCCCCccccCC--CCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCC
Q 042986 1135 SSLEILDIRHCHSLTYVAGV--QLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELP 1212 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~ 1212 (1485)
++|++|++++|..+..++.. ...++|+.|++++|. ++.+ +.
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~-------------------------~~----------- 213 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM-------------------------PN----------- 213 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC-------------------------CC-----------
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc-------------------------cc-----------
Confidence 77777777776666655432 233455555555442 1111 00
Q ss_pred cccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccC-C
Q 042986 1213 GALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFP-E 1291 (1485)
Q Consensus 1213 ~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p-~ 1291 (1485)
+..+ ++|++|++++|...+..+..|.++++|+.|++++|.+....+..+..+++|++|+|++|. +..+| .
T Consensus 214 -------~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 284 (452)
T 3zyi_A 214 -------LTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHD 284 (452)
T ss_dssp -------CTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred -------cccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChH
Confidence 1112 358999999998888778889999999999999999888888889999999999999995 44555 4
Q ss_pred CCcCccccceEEEcccc
Q 042986 1292 GGLLSAKLKRLVIGGCK 1308 (1485)
Q Consensus 1292 ~~~~~~~L~~L~l~~c~ 1308 (1485)
.+..+++|+.|++++|+
T Consensus 285 ~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEccCCC
Confidence 46678899999999875
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=4.5e-16 Score=179.08 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=83.2
Q ss_pred cccEEEEeccCCcc-hHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLE-SIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l 1304 (1485)
+|++|++++|...+ .+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 47788888776655 45777888888888888888887777888888889999999888644433335667788999999
Q ss_pred ccccCccccccCCCCC-CccCEEEeeCCCC
Q 042986 1305 GGCKKLEALPLGMHHL-TCLQHLTIGGVPS 1333 (1485)
Q Consensus 1305 ~~c~~l~~l~~~~~~l-~~L~~L~l~~~~~ 1333 (1485)
++|......|..+..+ ++|+.|++++|+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 9887666677777777 4899999988764
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=6.1e-18 Score=207.87 Aligned_cols=199 Identities=19% Similarity=0.174 Sum_probs=106.6
Q ss_pred CCcccEEEeccCCCccCCC----CCCCCCccEEEEeccccc-------ccccCCCCcceEEEEecCCCce--eecc-Ccc
Q 042986 915 FPKLRELHIVRCSKLQGTL----PTHLPLLDILVVQNCEEL-------LVSVASLPALCKLRIDRCKKVV--WRST-TDC 980 (1485)
Q Consensus 915 ~~~L~~L~l~~c~~l~~~l----p~~l~~L~~L~l~~~~~l-------~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~l 980 (1485)
.++|++|+++++ +++... ...+++|+.|++.+|..- ...+..+++|++|++++|.... ...+ ..+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 356888888774 454111 124567777777777522 2234556777777777665321 1111 122
Q ss_pred c----cccccccccccccCC------CcccCCCCCceEEeccCCCccccccchhhhhhhhhhhcchhhcccccchhhhhh
Q 042986 981 G----SQLYKDISNQMFLGG------PLKLHLPKLEELDISIIDELTYIWQNETQLLRDIVTLRRLKIERIPKLLFSVAE 1050 (1485)
Q Consensus 981 ~----~L~~l~ls~n~~~~~------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~l~~~~~~~~~ 1050 (1485)
. +|+.|++++|.+... ..+..+++|++|+++++..-. ...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~----------------------------- 130 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-AGL----------------------------- 130 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-HHH-----------------------------
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch-HHH-----------------------------
Confidence 2 466666666665532 233455666666666554111 000
Q ss_pred hhhhhhhccccccccEEEecccCcccc----ccccccCCCCcceEeeccCCCccccCCCC------CCCCCCEEEEecCC
Q 042986 1051 EEKDQWQFGLSCRLERLELRDCQDLVK----LPKSLLSLSSLTEIRIHNCSSLVSFPDAV------LPSQLRVISIWDCG 1120 (1485)
Q Consensus 1051 ~~~~~~~~~~~~~L~~L~Ls~~~~~~~----l~~~l~~l~~L~~L~L~~~~~l~~~~~~~------~~~~L~~L~l~~~~ 1120 (1485)
.......+...++|++|++++|.+... ++..+..+++|++|++++|......+... ..++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 000001122345688888888876653 35566677788888888775432111100 13477777777776
Q ss_pred CCCc----CccccccCCCCCccEEEEecCC
Q 042986 1121 ALKF----LPDAWMLDNNSSLEILDIRHCH 1146 (1485)
Q Consensus 1121 ~l~~----~~~~~~~~~l~~L~~L~l~~c~ 1146 (1485)
.... ++.. +..+++|++|++++|.
T Consensus 211 l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 211 VTSDNCRDLCGI--VASKASLRELALGSNK 238 (461)
T ss_dssp CBTTHHHHHHHH--HHHCTTCCEEECCSSB
T ss_pred CcHHHHHHHHHH--HHhCCCccEEeccCCc
Confidence 5442 2222 2456777777777774
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.2e-17 Score=186.92 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=165.0
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCc-cccCCCC--------CCCCCCEEEEecCCCCCcCcccc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSL-VSFPDAV--------LPSQLRVISIWDCGALKFLPDAW 1129 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~~~~~~--------~~~~L~~L~l~~~~~l~~~~~~~ 1129 (1485)
...++|+.|++++|.+ .+|..+... |+.|++++|... ..+|... .+++|++|++++|......|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456788888888887 566555443 788888887552 2333322 25778888888887776666654
Q ss_pred ccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccC
Q 042986 1130 MLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKN 1209 (1485)
Q Consensus 1130 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n 1209 (1485)
++..+++|++|++++|.. +..+ ..+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l-~~~~-----~~~~~----------------------------------------------- 142 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSW-ATRD-----AWLAE----------------------------------------------- 142 (312)
T ss_dssp SSCCSCCCSEEEEESCBC-SSSS-----SHHHH-----------------------------------------------
T ss_pred HHhcCCCccEEEccCCCC-cchh-----HHHHH-----------------------------------------------
Confidence 347788888888888762 1111 00000
Q ss_pred CCCcccccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccc--cCcCC--CCCCCcCEEEeeCCCC
Q 042986 1210 ELPGALDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKI--LPHGL--HKLWRLQEIDIHGCEN 1285 (1485)
Q Consensus 1210 ~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--l~~~l--~~l~~L~~L~L~~~~~ 1285 (1485)
+ ....+++|++|++++|...+..+..+..+++|+.|++++|.+.+. ++..+ ..+++|++|++++|..
T Consensus 143 -----l----~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 143 -----L----QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp -----H----HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred -----H----HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 0 000113588888888877666667788888888888888877654 22233 7788888888888853
Q ss_pred Cc--ccCCC-CcCccccceEEEccccCccccc-cCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccc
Q 042986 1286 LV--SFPEG-GLLSAKLKRLVIGGCKKLEALP-LGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSL 1361 (1485)
Q Consensus 1286 l~--~~p~~-~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 1361 (1485)
.. .++.. +..+++|++|++++|......| ..+..+++|++|++++|.. ..+|.... ++|++|++++|.... +
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~-~ 289 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDR-N 289 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--SEEEEEECCSSCCCS-C
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--CCceEEECCCCCCCC-C
Confidence 31 22211 2345788888888865444343 3455678888888888754 46665433 789999999887644 3
Q ss_pred cccCcCCccccccceeecccccc
Q 042986 1362 TESGGFHRLTSLRRLAISGCDER 1384 (1485)
Q Consensus 1362 ~~~~~~~~l~~L~~L~l~~n~~~ 1384 (1485)
|. +..+++|++|++++|++.
T Consensus 290 p~---~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 290 PS---PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC---TTTSCEEEEEECTTCTTT
T ss_pred hh---HhhCCCCCEEeccCCCCC
Confidence 44 788999999999999753
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=176.80 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=134.3
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCC--CCCCCCCEEEEecCCCCCcCccccccCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDA--VLPSQLRVISIWDCGALKFLPDAWMLDNN 1134 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 1134 (1485)
.+..+++|++|++++|.+.+..+..+.++++|++|++++|... .++.. ..+++|++|++++|.... ++....+.++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccC
Confidence 3566778888888888877766777888888888888888543 44432 245788888888887553 4431125778
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcc
Q 042986 1135 SSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGA 1214 (1485)
Q Consensus 1135 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~ 1214 (1485)
++|++|++++|..+..++...+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~---------------------------------------------------------- 170 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDF---------------------------------------------------------- 170 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTT----------------------------------------------------------
T ss_pred CCCcEEECCCCccccccCHHHc----------------------------------------------------------
Confidence 8888888888854443321110
Q ss_pred cccccccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC--
Q 042986 1215 LDHLVVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-- 1292 (1485)
Q Consensus 1215 l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-- 1292 (1485)
+.+ ++|++|++++|...+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|......+..
T Consensus 171 ------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 171 ------AGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp ------TTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ------cCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 011 13555555555544444555555555555555555542222222233555555555555322211111
Q ss_pred -CcCccccceEEEccccCc----cccccCCCCCCccCEEEeeCCCCCccccCCC-CCCCCcceEEeCCCCC
Q 042986 1293 -GLLSAKLKRLVIGGCKKL----EALPLGMHHLTCLQHLTIGGVPSLLCFTEDG-MFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1293 -~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~ 1357 (1485)
......++.++++++... ..+|..+.++++|+.|++++|. +..+|... ...++|++|++++|+.
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 112334555666554322 2355566677788888887764 34555543 3457788888888875
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=5.4e-17 Score=187.23 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=57.0
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSS 1136 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 1136 (1485)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.. +.++. .++|+.|++++|......+ ..+++
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l-~~l~~---~~~L~~L~l~~n~l~~~~~-----~~~~~ 121 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELLV---GPSIETLHAANNNISRVSC-----SRGQG 121 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE-EEEEE---CTTCCEEECCSSCCSEEEE-----CCCSS
T ss_pred HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc-ccccC---CCCcCEEECCCCccCCcCc-----cccCC
Confidence 45667788888888888765544 78888888888888853 34442 3788888888887654433 24677
Q ss_pred ccEEEEecCC
Q 042986 1137 LEILDIRHCH 1146 (1485)
Q Consensus 1137 L~~L~l~~c~ 1146 (1485)
|++|++++|.
T Consensus 122 L~~L~l~~N~ 131 (317)
T 3o53_A 122 KKNIYLANNK 131 (317)
T ss_dssp CEEEECCSSC
T ss_pred CCEEECCCCC
Confidence 8888888876
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=2.5e-17 Score=209.85 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=83.7
Q ss_pred ccCCCccEEEeecCCCccccCcCCC-CCCCcCEEEee-----CCCCCcccCC------CCcCccccceEEEccccCcccc
Q 042986 1246 DNNTSLEVIEIVSCENLKILPHGLH-KLWRLQEIDIH-----GCENLVSFPE------GGLLSAKLKRLVIGGCKKLEAL 1313 (1485)
Q Consensus 1246 ~~l~~L~~L~L~~~~~~~~l~~~l~-~l~~L~~L~L~-----~~~~l~~~p~------~~~~~~~L~~L~l~~c~~l~~l 1313 (1485)
..+++|+.|.+..|.+.......+. .+++|++|+++ +|..++..|. .+..+++|+.|++++ ......
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 4588999997777666544333333 57899999998 4555554332 134567899999976 222222
Q ss_pred ccCCC-CCCccCEEEeeCCCCCccccCCC-CCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1314 PLGMH-HLTCLQHLTIGGVPSLLCFTEDG-MFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1314 ~~~~~-~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+..+. .+++|+.|++++|.......... ...++|++|++++|+. +.......+..+++|++|++++|..
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22233 37789999998876422111100 1147888889988887 3222112345688888888888864
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=7.2e-15 Score=166.91 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=71.2
Q ss_pred ccEEEEeccCCcchH-HhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESI-VERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
|++|++++|...+.+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 444444444322222 3444445555555555555444444445555555555555553222222224444555555555
Q ss_pred cccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1306 GCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1306 ~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+|. ++.+|. .+.++++|+.|++++|......+......++|+.|++++|.... ++. ..+..+++|++|++++|+.
T Consensus 162 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 162 GNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPT-EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCH-HHHTTCTTCCEEECCSSCE
T ss_pred CCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCH-HHcccCcccCEEeccCCCc
Confidence 532 333332 34455555555555544333223333233555555555554433 222 2355666777777777653
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.4e-14 Score=159.53 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=71.6
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCC-CccccCcCCCCCCCcCEEEeeCCCCCcccC-CCCcCccccceEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCE-NLKILPHGLHKLWRLQEIDIHGCENLVSFP-EGGLLSAKLKRLV 1303 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p-~~~~~~~~L~~L~ 1303 (1485)
+|++|++++|...+..+..|.++++|+.|++++|. +....+..|.++++|++|++++|..+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555554444334445555555555555554 222222345555555555555521333333 2344455555555
Q ss_pred EccccCccccccCCCCCCccC---EEEeeCCCCCccccCC-CCCCCCcc-eEEeCCCCCCccccccCcCCccccccceee
Q 042986 1304 IGGCKKLEALPLGMHHLTCLQ---HLTIGGVPSLLCFTED-GMFPTNLH-SLEIDGMKIWKSLTESGGFHRLTSLRRLAI 1378 (1485)
Q Consensus 1304 l~~c~~l~~l~~~~~~l~~L~---~L~l~~~~~l~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 1378 (1485)
+++|. ++.+|. +..+++|+ .|++++|+.+..++.. ....++|+ +|++++|... .++. ..+.. ++|++|++
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~-~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-TTTTT-CEEEEEEC
T ss_pred CCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-hhcCC-CCCCEEEc
Confidence 55533 334443 44455554 5555555444444432 12234555 5555555443 3333 22333 55555555
Q ss_pred ccc
Q 042986 1379 SGC 1381 (1485)
Q Consensus 1379 ~~n 1381 (1485)
++|
T Consensus 187 ~~n 189 (239)
T 2xwt_C 187 NKN 189 (239)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 76
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.58 E-value=1.9e-15 Score=140.53 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh--cccCchHHHHHHHHHHhhhhhhhhHHHHHHH
Q 042986 12 SIDLLVKKIASEGIRLFARKEQIQADLLKWKRMLVMIKEVLDDAEEK--KRTHGSVKMWLGELQNLAYDVEDLLNEFQTE 89 (1485)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lrd~ayd~eD~ld~~~~~ 89 (1485)
+++.+++||++....++....||++|+++|+++|++|++||.+|+++ +..+.+++.|++||||+||||||+||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888889999999999999999999999999999988 5578999999999999999999999999998
Q ss_pred H
Q 042986 90 A 90 (1485)
Q Consensus 90 ~ 90 (1485)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 7
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=1.3e-15 Score=175.14 Aligned_cols=224 Identities=17% Similarity=0.116 Sum_probs=156.9
Q ss_pred cccEEEEeccCCc-chHHhhcc-------cCCCccEEEeecCCCccccCcCC--CCCCCcCEEEeeCCCCCcccCCCCcC
Q 042986 1226 ALKFLSIWHCSRL-ESIVERLD-------NNTSLEVIEIVSCENLKILPHGL--HKLWRLQEIDIHGCENLVSFPEGGLL 1295 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~l~~~l--~~l~~L~~L~L~~~~~l~~~p~~~~~ 1295 (1485)
.|+.|++++|... ..++..+. ++++|++|++++|.+.+.+|..+ ..+++|++|++++|.... +|..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHH
Confidence 4788888887653 23444333 68899999999998888888766 888999999999985444 4655555
Q ss_pred c-----cccceEEEccccCccccccCCCCCCccCEEEeeCCCCCcc--ccCCC--CCCCCcceEEeCCCCCCc--ccccc
Q 042986 1296 S-----AKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLC--FTEDG--MFPTNLHSLEIDGMKIWK--SLTES 1364 (1485)
Q Consensus 1296 ~-----~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~ 1364 (1485)
+ ++|++|++++|......|..+.++++|++|++++|..... ++... ...++|++|++++|.... .++.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~- 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS- 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-
Confidence 5 7899999998765554557888899999999998875443 12111 235789999999987642 2221
Q ss_pred CcCCccccccceeecccccccccccccccccccCCCCCccceeecccCCCCccccccccCCCCCeEeecCCCCCCCCCCC
Q 042986 1365 GGFHRLTSLRRLAISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSSICDQNLTSLKLKNCPKLKYFPKK 1444 (1485)
Q Consensus 1365 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~l~~~ 1444 (1485)
..+..+++|++|++++|.+......+ . ...+++|++|+++++. ++.++.... ++|++|+++++ +++.+|..
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~--~----~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~~ 292 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAP--S----CDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYN-RLDRNPSP 292 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCS--C----CCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSS-CCCSCCCT
T ss_pred HHHhcCCCCCEEECCCCcCCcccchh--h----hhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCC-CCCCChhH
Confidence 23457789999999998754322111 1 1235678899888864 567776544 78999999985 67777765
Q ss_pred CCCCccceeeccCCcc
Q 042986 1445 GLPASLLRLEIEKCPL 1460 (1485)
Q Consensus 1445 ~~~~sL~~L~i~~C~~ 1460 (1485)
.-.++|++|++++++.
T Consensus 293 ~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTSCEEEEEECTTCTT
T ss_pred hhCCCCCEEeccCCCC
Confidence 5557899999988753
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=8.7e-15 Score=178.81 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=127.9
Q ss_pred hccccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSS 1136 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 1136 (1485)
.|..+++|++|+|++|.+.+..| +..+++|++|++++|. ++.++. .++|+.|++++|......+ ..+++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L~~N~l~~~~~-----~~l~~ 121 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHAANNNISRVSC-----SRGQG 121 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEECCSSCCCCEEE-----CCCSS
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEECcCCcCCCCCc-----cccCC
Confidence 46778999999999999877665 8999999999999995 445543 3899999999998665543 24688
Q ss_pred ccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccc
Q 042986 1137 LEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALD 1216 (1485)
Q Consensus 1137 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~ 1216 (1485)
|+.|++++|.... ++...
T Consensus 122 L~~L~L~~N~l~~-~~~~~------------------------------------------------------------- 139 (487)
T 3oja_A 122 KKNIYLANNKITM-LRDLD------------------------------------------------------------- 139 (487)
T ss_dssp CEEEECCSSCCCS-GGGBC-------------------------------------------------------------
T ss_pred CCEEECCCCCCCC-CCchh-------------------------------------------------------------
Confidence 9999999887221 11000
Q ss_pred cccccCCcccccEEEEeccCCcchHHhhcc-cCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcC
Q 042986 1217 HLVVGNLPQALKFLSIWHCSRLESIVERLD-NNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLL 1295 (1485)
Q Consensus 1217 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~ 1295 (1485)
++.+ ++|++|++++|...+..|..+. .+++|+.|+|++|.+.+. | ....+++|++|+|++|. +..+|..+..
T Consensus 140 ---~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 212 (487)
T 3oja_A 140 ---EGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNK-LAFMGPEFQS 212 (487)
T ss_dssp ---GGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSC-CCEECGGGGG
T ss_pred ---hcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCC-CCCCCHhHcC
Confidence 1111 1366666666655555555543 566666666666665544 2 23346666666666663 4445545556
Q ss_pred ccccceEEEccccCccccccCCCCCCccCEEEeeCCCCC
Q 042986 1296 SAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSL 1334 (1485)
Q Consensus 1296 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l 1334 (1485)
+++|+.|++++| .++.+|..+..+++|+.|++++|+..
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 666666666664 34456666666666666666666544
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=5.7e-14 Score=154.66 Aligned_cols=208 Identities=15% Similarity=0.084 Sum_probs=136.7
Q ss_pred cchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEccccCccccc-c
Q 042986 1238 LESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIGGCKKLEALP-L 1315 (1485)
Q Consensus 1238 ~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~~c~~l~~l~-~ 1315 (1485)
++.+|. + .++|+.|++++|.+.+..+..+.++++|++|++++|..++.++. .+..+++|++|++++|+.++.++ .
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444454 2 23788888888777666666777888888888888854555554 46677788888888756666665 3
Q ss_pred CCCCCCccCEEEeeCCCCCccccCCCCCCCCcc---eEEeCCCCCCccccccCcCCcccccc-ceeeccccccccccccc
Q 042986 1316 GMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLH---SLEIDGMKIWKSLTESGGFHRLTSLR-RLAISGCDERMVVSFPL 1391 (1485)
Q Consensus 1316 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~ 1391 (1485)
.+.++++|++|++++|.. ..+|. ....++|+ +|++++|+.++.++. ..|..+++|+ +|++++|.+. .++.
T Consensus 100 ~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~---~i~~ 173 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT---SVQG 173 (239)
T ss_dssp SEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC---EECT
T ss_pred HhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc---ccCH
Confidence 566788888888887653 33554 23345666 888888855555555 4577788888 8888887643 3332
Q ss_pred ccccccCCCCCccceeecccCCCCcccccc--ccC-CCCCeEeecCCCCCCCCCCCCCCCccceeeccCCcch
Q 042986 1392 EDIGLGTTLPACLTHLDIFNFPNLERLSSS--ICD-QNLTSLKLKNCPKLKYFPKKGLPASLLRLEIEKCPLI 1461 (1485)
Q Consensus 1392 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~--~~~-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~C~~L 1461 (1485)
..+ ..++|++|+++++++++.++.. ..+ ++|+.|++++ .+++.+|.. ..++|+.|++++|..|
T Consensus 174 ~~~-----~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 174 YAF-----NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTT-----TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred hhc-----CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 211 1246888888887767766543 234 6788888887 457777765 4567888888877653
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=3.8e-14 Score=160.10 Aligned_cols=203 Identities=17% Similarity=0.079 Sum_probs=143.1
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
+|++|++|++++|......+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45679999999998777666688999999999999998877777789999999999999996555555668888999999
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCc-cccCCCCCCCCcceEEeCCCCCCccccccCcCCcccccc----cee
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLL-CFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLR----RLA 1377 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~----~L~ 1377 (1485)
++++|......+..+.++++|++|++++|.... .+|......++|++|++++|......+. .+..+++|+ +|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLD 183 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHHTCTTCCEEEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH--Hhhhhhhccccceeee
Confidence 999976544444468899999999999876533 2344444458899999999876543322 466666666 788
Q ss_pred ecccccccccccccccccccCCCCCccceeecccCCCCcccccc--ccCCCCCeEeecCCC
Q 042986 1378 ISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSS--ICDQNLTSLKLKNCP 1436 (1485)
Q Consensus 1378 l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~--~~~~~L~~L~l~~c~ 1436 (1485)
+++|.+.. ++... ....+|++|+++++. ++.++.. ..+++|+.|++++++
T Consensus 184 ls~n~l~~---~~~~~-----~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 184 LSLNPMNF---IQPGA-----FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCCE---ECTTS-----SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCcccc---cCccc-----cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 88887432 22111 112256666666654 4444432 134566666666543
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3e-13 Score=158.21 Aligned_cols=168 Identities=16% Similarity=0.010 Sum_probs=84.9
Q ss_pred EEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCc-cccceEEEccc
Q 042986 1230 LSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLS-AKLKRLVIGGC 1307 (1485)
Q Consensus 1230 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~-~~L~~L~l~~c 1307 (1485)
+.+.+|......+..|..+++|+.|++++|.+....+..+....++..|++.++..+..++.. +..+ ..++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 333334333333455666666666666666555444444445555666666655555555443 2222 24555555552
Q ss_pred cCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccccccc
Q 042986 1308 KKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDERMVV 1387 (1485)
Q Consensus 1308 ~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1387 (1485)
.++.+|......++|++|++.+++.+..+| . ..|..+++|++|++++|.+ .
T Consensus 165 -~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~------------------------~-~~f~~l~~L~~LdLs~N~l---~ 215 (350)
T 4ay9_X 165 -GIQEIHNSAFNGTQLDELNLSDNNNLEELP------------------------N-DVFHGASGPVILDISRTRI---H 215 (350)
T ss_dssp -CCCEECTTSSTTEEEEEEECTTCTTCCCCC------------------------T-TTTTTEECCSEEECTTSCC---C
T ss_pred -cccCCChhhccccchhHHhhccCCcccCCC------------------------H-HHhccCcccchhhcCCCCc---C
Confidence 344454444444455555554444444443 3 2355555666666666552 2
Q ss_pred ccccccccccCCCCCccceeecccCCCCccccccccCCCCCeEeec
Q 042986 1388 SFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSSICDQNLTSLKLK 1433 (1485)
Q Consensus 1388 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~ 1433 (1485)
.+|. ..+.+|++|.+.++.+++.+|....+++|+.+++.
T Consensus 216 ~lp~-------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 216 SLPS-------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCCS-------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccCh-------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 2221 12344555555555556666555455666666554
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=1.5e-13 Score=165.67 Aligned_cols=311 Identities=13% Similarity=0.038 Sum_probs=185.6
Q ss_pred CCceeechhHHHHHHHHH-hcCCCCC-CCCcEEEEE--EcCCCCcHHHHHHHHhccccccc---ccC-eeEEEEEcCccC
Q 042986 213 EAKVYGRETEKRDIVELL-LKDDLRN-DGGFSVIPI--IGMGGLGKTTLAQLVYNDKQVQY---YFD-LKAWTCVSDDFD 284 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l-~~~~~~~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~F~-~~~wv~~s~~~~ 284 (1485)
+..++||+++++++.+++ ..... + .....++.| +|++|+||||||+.+++...... .|+ ..+|+.+....+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~-~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS-GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT-SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc-CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 367999999999999988 43110 1 013456666 99999999999999998543210 122 357777767778
Q ss_pred HHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCC------ChhhHhhcccccccC---C--CC
Q 042986 285 VIWLTTIILRSITKQTI-DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNE------NYNDWVDMSCPFEAG---A--PG 350 (1485)
Q Consensus 285 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~------~~~~~~~l~~~l~~~---~--~g 350 (1485)
...+...++.+++.... ...+.+.+...+.+.+. +++++||+||+|.. ....+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 88999999998865432 12345566666666664 67999999999652 122333333333211 2 34
Q ss_pred cEEEEEccchhhhhhc--------CC-cCceeCCCCChhhHHHHHHhcc---cCCCCCCCChhHHHHHHHHHHHcC----
Q 042986 351 SKIIVTTRNREVAAIM--------GT-VPAYQLKNLSIDDCLSVFAQHS---LGTRDFSSNKSLEEIGRKIVIKCN---- 414 (1485)
Q Consensus 351 s~iivTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~i~~~c~---- 414 (1485)
..||+||+...+...+ .. ...+++.+++.++++++|...+ +.... .+ .+....|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKG 254 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGT
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhcc
Confidence 4588888766533211 11 1239999999999999997653 32111 11 356778889999
Q ss_pred --CChhHHHHHHhH-h--h---cC--CChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccccC--CC
Q 042986 415 --GLPLAAKTLGGL-L--R---GK--YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP--KD 482 (1485)
Q Consensus 415 --g~PLai~~~~~~-l--~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~ 482 (1485)
|.|..+..+... . . +. -+.+.+..++..... ...+.-++..||.+.+.++..++.+. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 999755544332 1 1 11 123344433332110 23345567889999999998888654 23
Q ss_pred cccChHHHHHHHH--H-cCCCCCCCCCCChhhHHHHHHHHHHhcccccccC---CCCCcEEEechH
Q 042986 483 YEFEEEEIVLLWC--A-SGFLDHEENENPSEDLGHDFFKELHSRSFFQQSS---NNTSRFVMHDLI 542 (1485)
Q Consensus 483 ~~i~~~~li~~w~--a-~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~---~~~~~~~mHdlv 542 (1485)
..+...++...+. + .-. . ...........+++.|++.+++.... +...+|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMY-N---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHS-C---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3556666555442 2 111 0 01112345678899999999997653 233456666554
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=5.4e-14 Score=158.78 Aligned_cols=201 Identities=20% Similarity=0.211 Sum_probs=118.4
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCC--CCCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPD--AVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
+++|++|++++|.+....+..+.++++|++|++++|... .++. ...+++|++|++++|......+.. +.++++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~ 103 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ 103 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh--hcCCcccc
Confidence 357889999998887666668888888999999888543 4433 223466777777766654443333 35566666
Q ss_pred EEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccc
Q 042986 1139 ILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHL 1218 (1485)
Q Consensus 1139 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~ 1218 (1485)
+|++++|.. ..++..
T Consensus 104 ~L~l~~n~l-~~~~~~---------------------------------------------------------------- 118 (276)
T 2z62_A 104 KLVAVETNL-ASLENF---------------------------------------------------------------- 118 (276)
T ss_dssp EEECTTSCC-CCSTTC----------------------------------------------------------------
T ss_pred EEECCCCCc-cccCch----------------------------------------------------------------
Confidence 666666541 111000
Q ss_pred cccCCcccccEEEEeccCCcc-hHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcC----EEEeeCCCCCcccCCCC
Q 042986 1219 VVGNLPQALKFLSIWHCSRLE-SIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQ----EIDIHGCENLVSFPEGG 1293 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~----~L~L~~~~~l~~~p~~~ 1293 (1485)
.++.+ ++|++|++++|.... .+|..+..+++|+.|++++|.+.+..+..+..+++|+ +|++++|. +..++...
T Consensus 119 ~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~ 196 (276)
T 2z62_A 119 PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA 196 (276)
T ss_dssp CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTS
T ss_pred hcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccc
Confidence 01111 236666676665544 2466677777777777777766665555555555555 67777764 44444444
Q ss_pred cCccccceEEEccccCcccccc-CCCCCCccCEEEeeCCC
Q 042986 1294 LLSAKLKRLVIGGCKKLEALPL-GMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1294 ~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~ 1332 (1485)
....+|++|++++|. ++.+|. .+.++++|+.|++++|+
T Consensus 197 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 444467777776654 444443 23455566666655543
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1.4e-13 Score=155.72 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=110.4
Q ss_pred ccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEEecCCCCccccCCCCCCCCc
Q 042986 1082 LLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLK 1161 (1485)
Q Consensus 1082 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 1161 (1485)
+.+++++++++++++ .++.+|.. .+++++.|++++|......+.. +..+++|++|++++|. ++.++....++
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~l~--- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPD-LPKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAE-LTKLQVDGTLP--- 77 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSC-CCTTCCEEECTTSCCSEEEGGG--GTTCTTCCEEECTTSC-CCEEECCSCCT---
T ss_pred ccccCCccEEECCCC-CCCcCCCC-CCCCCCEEEcCCCcCCccCHHH--hhcCCCCCEEECCCCc-cCcccCCCCCC---
Confidence 344555666666555 33344432 2356677777776655444443 4677888888888776 22222111111
Q ss_pred eEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchH
Q 042986 1162 QLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESI 1241 (1485)
Q Consensus 1162 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~ 1241 (1485)
+|++|++++|... .+
T Consensus 78 ----------------------------------------------------------------~L~~L~Ls~N~l~-~l 92 (290)
T 1p9a_G 78 ----------------------------------------------------------------VLGTLDLSHNQLQ-SL 92 (290)
T ss_dssp ----------------------------------------------------------------TCCEEECCSSCCS-SC
T ss_pred ----------------------------------------------------------------cCCEEECCCCcCC-cC
Confidence 3555555555332 34
Q ss_pred HhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEccccCcccccc-CCCC
Q 042986 1242 VERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIGGCKKLEALPL-GMHH 1319 (1485)
Q Consensus 1242 ~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~ 1319 (1485)
|..+..+++|+.|++++|.+.+..+..|..+++|++|+|++|. +..+|. .+..+++|+.|++++|. ++.+|. .+.+
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 170 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHHhcC
Confidence 4455566666666666666555555556666666666666664 333333 24455666666666643 444443 3345
Q ss_pred CCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCC
Q 042986 1320 LTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1320 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 1357 (1485)
+++|+.|++++|. +..+|.......+|+.|++++|+.
T Consensus 171 l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 171 LENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 6666666666653 334555444445677777777664
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=2.1e-13 Score=160.53 Aligned_cols=292 Identities=13% Similarity=0.122 Sum_probs=178.0
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc------CH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF------DV 285 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~ 285 (1485)
.+..+|||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3567999999999999998431 589999999999999999999743 1 6677765432 55
Q ss_pred HHHHHHHHHhhcC----------------CCC--CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCCh------hhHhhc
Q 042986 286 IWLTTIILRSITK----------------QTI--DNSDLNLLQEELKKQLSR-KKFLLVLDDVWNENY------NDWVDM 340 (1485)
Q Consensus 286 ~~~~~~il~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LivlDdv~~~~~------~~~~~l 340 (1485)
..+.+.+...+.. ... ...+.+++.+.+.+..+. ++++||+||++.... .++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 123556666666665543 389999999965321 122222
Q ss_pred ccccccCCCCcEEEEEccchhh-hhh---------c-CC-cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHH
Q 042986 341 SCPFEAGAPGSKIIVTTRNREV-AAI---------M-GT-VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRK 408 (1485)
Q Consensus 341 ~~~l~~~~~gs~iivTtr~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~ 408 (1485)
...+....++.++|+|++...+ ... . +. ...+++.+|+.+|+.+++....-..+ .... .+.+.+
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~---~~~~~~ 230 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVP---ENEIEE 230 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHH
Confidence 2222222247889999887543 211 1 11 13689999999999999987432111 1111 356788
Q ss_pred HHHHcCCChhHHHHHHhHhhcCCChhHHHH-HhhccccCCCcccccchhHHHhccccC---ChhhHhhhccccccCCCcc
Q 042986 409 IVIKCNGLPLAAKTLGGLLRGKYSQCEWEG-VLSSKIWDLPEERCDIIPALRVSYYYL---SAPLKQCFAYCSLFPKDYE 484 (1485)
Q Consensus 409 i~~~c~g~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~~~fp~~~~ 484 (1485)
|++.++|+|+++..++..+....+...+.. +.+ .+...+.-.+..+ ++..+..+..+|. + .
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 999999999999998876533222222211 111 1111111111222 7788889988887 2 2
Q ss_pred cChHHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHhcccccccCCCCCcEEE-echHHHHHH
Q 042986 485 FEEEEIVLLWCASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSRFVM-HDLINDLAQ 547 (1485)
Q Consensus 485 i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~~~~~~~~m-Hdlv~~~a~ 547 (1485)
++...+.....+. . ++ ........+++.|++.+++.... ..|.+ |++++++.+
T Consensus 296 ~~~~~l~~~~~~~-~-----~~-~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVK-G-----TK-IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHT-T-----CC-CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 3445554433221 1 01 12345678999999999998652 35665 677777643
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=2.1e-14 Score=164.34 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=113.8
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
++++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 5677788888888777776 57777888888888888877766 777888888888877 466665 5777888888888
Q ss_pred cCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEe
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQW 783 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 783 (1485)
++|. +..+|. ++.+++|++|..... .+..+. .+..+++|+.|+++.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n------~l~~~~--------------------------~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLN------QITNIS--------------------------PLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSS------CCCCCG--------------------------GGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCC------ccCcCc--------------------------cccCCCCccEEEccC
Confidence 8777 566653 666666666622111 000000 022334444444433
Q ss_pred ccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCceeE
Q 042986 784 TCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHLE 863 (1485)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 863 (1485)
+... .+..+..+++|+.|+++++....+|. +. .+++|+.|++++|.+.+. +++..+++|+.|+
T Consensus 161 n~l~-------------~~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVS-------------DLTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDV-SPLANTSNLFIVT 223 (308)
T ss_dssp SCCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBC-GGGTTCTTCCEEE
T ss_pred CcCC-------------CChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCcc-ccccCCCCCCEEE
Confidence 2210 00113445566666666666555554 21 356666666666665432 2456666666666
Q ss_pred ecCCC
Q 042986 864 VCGMS 868 (1485)
Q Consensus 864 L~~~~ 868 (1485)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 66543
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=4.5e-13 Score=150.36 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=50.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L~l~ 1305 (1485)
|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|+|++|. +..+|.. +..+++|++|+++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEec
Confidence 5555555554433333444555555555555555555444455555666666666553 3333322 4445555555555
Q ss_pred cccCccccc-cCCCCCCccCEEEeeCC
Q 042986 1306 GCKKLEALP-LGMHHLTCLQHLTIGGV 1331 (1485)
Q Consensus 1306 ~c~~l~~l~-~~~~~l~~L~~L~l~~~ 1331 (1485)
+|. ++.++ ..+.++++|++|++++|
T Consensus 166 ~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 166 NNQ-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCc-CcEeChhHhccCCCcCEEECCCC
Confidence 543 22222 23444455555555444
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=7.8e-14 Score=160.24 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=139.9
Q ss_pred cccccEEEecccCccccccccc--cCCCCcceEeeccCCCccccCC-----CCCCCCCCEEEEecCCCCCcCccccccCC
Q 042986 1061 SCRLERLELRDCQDLVKLPKSL--LSLSSLTEIRIHNCSSLVSFPD-----AVLPSQLRVISIWDCGALKFLPDAWMLDN 1133 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l--~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 1133 (1485)
+++|++|++++|.+.+..|..+ ..+++|++|++++|......+. ...+++|++|++++|......+.. +.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ--VRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS--CCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH--hcc
Confidence 4679999999999988888877 8899999999999976543331 113577888888888765554443 467
Q ss_pred CCCccEEEEecCCCCcc--ccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCC
Q 042986 1134 NSSLEILDIRHCHSLTY--VAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNEL 1211 (1485)
Q Consensus 1134 l~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l 1211 (1485)
+++|++|++++|+.... ++...
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------- 191 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAAL-------------------------------------------------------- 191 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTS--------------------------------------------------------
T ss_pred CCCCCEEECCCCCCccchhhhHHH--------------------------------------------------------
Confidence 77788888887763211 00000
Q ss_pred CcccccccccCCcccccEEEEeccCCcc--hHHh-hcccCCCccEEEeecCCCccccCcCCCCC---CCcCEEEeeCCCC
Q 042986 1212 PGALDHLVVGNLPQALKFLSIWHCSRLE--SIVE-RLDNNTSLEVIEIVSCENLKILPHGLHKL---WRLQEIDIHGCEN 1285 (1485)
Q Consensus 1212 ~~~l~~~~~~~l~~~L~~L~l~~~~~~~--~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~l~~l---~~L~~L~L~~~~~ 1285 (1485)
.++.+| +|++|++++|.... ..+. .+..+++|++|++++|.+.+..|..+..+ ++|++|+|++|.
T Consensus 192 -------~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~- 262 (310)
T 4glp_A 192 -------CPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG- 262 (310)
T ss_dssp -------CTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-
T ss_pred -------hhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-
Confidence 011222 47888888886542 2222 35788999999999998888777777666 699999999985
Q ss_pred CcccCCCCcCccccceEEEccccCccccccCCCCCCccCEEEeeCCCC
Q 042986 1286 LVSFPEGGLLSAKLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPS 1333 (1485)
Q Consensus 1286 l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~ 1333 (1485)
++.+|..+. ++|++|++++| .++.+|. +..+++|+.|++++|+.
T Consensus 263 l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 263 LEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 557777654 68899999885 4555553 56677777777777653
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=1.2e-13 Score=155.24 Aligned_cols=148 Identities=15% Similarity=-0.030 Sum_probs=95.2
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l 1304 (1485)
+|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEEC
Confidence 47777777776555555556777777777777777766666667777778888887774 334443 3556777777887
Q ss_pred ccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1305 GGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1305 ~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
++|......+..+.++++|++|++++|......+......++|+.|++++|+.. +.+++|+.|+++.|..
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhC
Confidence 776433333334567777777777776543322222233567777777777542 3456777777777764
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=9.8e-14 Score=155.92 Aligned_cols=90 Identities=13% Similarity=-0.045 Sum_probs=61.4
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
+|++|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+... .+++|+.|++.
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~ 230 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 230 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHH
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHH
Confidence 47777777776655555556777788888888877777666667777888888888875443 23467777777
Q ss_pred cccCccccccCCCCCCc
Q 042986 1306 GCKKLEALPLGMHHLTC 1322 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~ 1322 (1485)
.|.....+|..+..++.
T Consensus 231 ~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHTGGGBBCTTSCBCG
T ss_pred HHhCCCcccCcccccCC
Confidence 76666677766655443
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=7.9e-13 Score=149.51 Aligned_cols=177 Identities=20% Similarity=0.134 Sum_probs=139.2
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
+|++++.|++++|......+..+..+++|+.|++++|.+....+ ...+++|++|++++| .+..+|..+..+++|++|
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEE
Confidence 34679999999999888778889999999999999998766433 378999999999999 466888888889999999
Q ss_pred EEccccCccccc-cCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeecc
Q 042986 1303 VIGGCKKLEALP-LGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISG 1380 (1485)
Q Consensus 1303 ~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1380 (1485)
++++|. ++.+| ..+.++++|++|++++|.. ..++.. ....++|+.|++++|... .++. ..|..+++|++|++++
T Consensus 106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 106 DVSFNR-LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPA-GLLNGLENLDTLLLQE 181 (290)
T ss_dssp ECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCS-CCCT-TTTTTCTTCCEEECCS
T ss_pred ECCCCc-CcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCC-ccCH-HHhcCcCCCCEEECCC
Confidence 999965 55554 6788999999999999754 445443 234689999999999764 4544 4578999999999999
Q ss_pred cccccccccccccccccCCCCCccceeecccCCC
Q 042986 1381 CDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPN 1414 (1485)
Q Consensus 1381 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 1414 (1485)
|.+. .++... .-..+|++|++.+++-
T Consensus 182 N~l~---~ip~~~-----~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLY---TIPKGF-----FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCC---CCCTTT-----TTTCCCSEEECCSCCB
T ss_pred CcCC---ccChhh-----cccccCCeEEeCCCCc
Confidence 9853 444322 1234788899887664
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=8.4e-13 Score=154.37 Aligned_cols=223 Identities=20% Similarity=0.186 Sum_probs=169.1
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCc-CCCCCCCcCEEEeeCCCCCccc-CCCCcCccccc
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPH-GLHKLWRLQEIDIHGCENLVSF-PEGGLLSAKLK 1300 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~-p~~~~~~~~L~ 1300 (1485)
+|.++++|+|++|.+.+..+..|.++++|++|+|++|.+.+.+|. .|.++++|.++.+.++..+..+ |..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 456799999999976655456799999999999999999887764 5788999887555544456666 55678899999
Q ss_pred eEEEccccCccccc-cCCCCCCccCEEEeeCCCCCccccCCCC--CCCCcceEEeCCCCCCccccccCcCCcccccccee
Q 042986 1301 RLVIGGCKKLEALP-LGMHHLTCLQHLTIGGVPSLLCFTEDGM--FPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLA 1377 (1485)
Q Consensus 1301 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 1377 (1485)
+|++++|. ++.+| ..+.....+..|++.++..+..++...+ .+..++.|++++|.+. .++. . +-..++|++|+
T Consensus 108 ~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~-~-~f~~~~L~~l~ 183 (350)
T 4ay9_X 108 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-S-AFNGTQLDELN 183 (350)
T ss_dssp EEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-T-SSTTEEEEEEE
T ss_pred cccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh-h-hccccchhHHh
Confidence 99999965 55554 3455677888999999888888776533 2357899999999874 4444 2 33567899999
Q ss_pred ecccccccccccccccccccCCCCCccceeecccCCCCccccccccCCCCCeEeecCCCCCCCCCCCCCCCccceeeccC
Q 042986 1378 ISGCDERMVVSFPLEDIGLGTTLPACLTHLDIFNFPNLERLSSSICDQNLTSLKLKNCPKLKYFPKKGLPASLLRLEIEK 1457 (1485)
Q Consensus 1378 l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~ 1457 (1485)
+++|+. +..++.+.+ .-.++|+.|+++++ .++++|.. .+.+|+.|.+.+|.+++.+|...-.++|+.+++.+
T Consensus 184 l~~~n~--l~~i~~~~f----~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSDNNN--LEELPNDVF----HGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTT--CCCCCTTTT----TTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hccCCc--ccCCCHHHh----ccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 987553 344443221 23467999999987 68888875 57899999999999999999755557899998864
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=7.1e-13 Score=148.78 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=110.8
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
+|+++++|++++|......+..|..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 34568888888887666556678888888888888887765555556788888888888885433333345677888888
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
++++|......+..+.++++|++|++++|. +..++.. ....++|++|++++|.... ++. ..|..+++|++|++++|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR-VPE-GAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-CCT-TTTTTCTTCCEEECCSS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE-eCh-hHhccCCCcCEEECCCC
Confidence 888865444444456788888888888874 3344433 2345788888888886544 333 34777888888888888
Q ss_pred cc
Q 042986 1382 DE 1383 (1485)
Q Consensus 1382 ~~ 1383 (1485)
.+
T Consensus 192 ~l 193 (270)
T 2o6q_A 192 QL 193 (270)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.5e-14 Score=169.02 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=126.7
Q ss_pred ccccEEEecccCccccccccccCC--CCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCc-CccccccCCCCCcc
Q 042986 1062 CRLERLELRDCQDLVKLPKSLLSL--SSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKF-LPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1062 ~~L~~L~Ls~~~~~~~l~~~l~~l--~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~ 1138 (1485)
..++.++++++.+. +..+..+ ++++.|++++|......+....+++|++|++++|..... ++.. +..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCC
Confidence 34788888887765 4455555 788888888886555555544567777777777764332 3332 45677777
Q ss_pred EEEEecCCCCcccc-CCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCccccc
Q 042986 1139 ILDIRHCHSLTYVA-GVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDH 1217 (1485)
Q Consensus 1139 ~L~l~~c~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~ 1217 (1485)
+|++++|......+ ....++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~----------------------------------------------------------- 142 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNS----------------------------------------------------------- 142 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCT-----------------------------------------------------------
T ss_pred EEeCcCcccCHHHHHHHhcCC-----------------------------------------------------------
Confidence 77777765111110 001112
Q ss_pred ccccCCcccccEEEEeccCCcc--hHHhhcccCCCccEEEeecC-CCccc-cCcCCCCCC-CcCEEEeeCCC-CC--ccc
Q 042986 1218 LVVGNLPQALKFLSIWHCSRLE--SIVERLDNNTSLEVIEIVSC-ENLKI-LPHGLHKLW-RLQEIDIHGCE-NL--VSF 1289 (1485)
Q Consensus 1218 ~~~~~l~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~-~~~~~-l~~~l~~l~-~L~~L~L~~~~-~l--~~~ 1289 (1485)
+|++|++++|...+ .++..+..+++|++|++++| .+... ++..+..++ +|++|++++|. .+ ..+
T Consensus 143 --------~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 143 --------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp --------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred --------CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 35555555553222 24444555555555555555 33321 344445555 55555555552 11 223
Q ss_pred CCCCcCccccceEEEccccCcc-ccccCCCCCCccCEEEeeCCCCCccccC-CCCCCCCcceEEeCCCCCCccccccCcC
Q 042986 1290 PEGGLLSAKLKRLVIGGCKKLE-ALPLGMHHLTCLQHLTIGGVPSLLCFTE-DGMFPTNLHSLEIDGMKIWKSLTESGGF 1367 (1485)
Q Consensus 1290 p~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 1367 (1485)
|..+..+++|++|++++|..++ ..+..+.++++|++|++++|..+..... .....++|++|++++| ++. ..+
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~-~~~ 288 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPD-GTL 288 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCT-TCH
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCH-HHH
Confidence 3333345555555555555332 3333455556666666666543221100 0111356666666666 122 223
Q ss_pred Cccc-cccceeeccccc
Q 042986 1368 HRLT-SLRRLAISGCDE 1383 (1485)
Q Consensus 1368 ~~l~-~L~~L~l~~n~~ 1383 (1485)
..+. +|+.|++++|..
T Consensus 289 ~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 289 QLLKEALPHLQINCSHF 305 (336)
T ss_dssp HHHHHHSTTSEESCCCS
T ss_pred HHHHhhCcceEEecccC
Confidence 3443 467777777664
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.5e-14 Score=169.03 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=110.0
Q ss_pred ccccEEEEeccCCcch-HHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCc--ccCCCCcCccccce
Q 042986 1225 QALKFLSIWHCSRLES-IVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLV--SFPEGGLLSAKLKR 1301 (1485)
Q Consensus 1225 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~--~~p~~~~~~~~L~~ 1301 (1485)
++|++|++++|..... ++..+..+++|++|++++|.+....+..+..+++|++|++++|..+. .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 3588888888876544 77778888888888888888776777777788888888888885444 25555566778888
Q ss_pred EEEccccCccc--cccCCCCCC-ccCEEEeeCCC-CCc--cccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccc
Q 042986 1302 LVIGGCKKLEA--LPLGMHHLT-CLQHLTIGGVP-SLL--CFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRR 1375 (1485)
Q Consensus 1302 L~l~~c~~l~~--l~~~~~~l~-~L~~L~l~~~~-~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 1375 (1485)
|++++|..++. ++..+..++ +|++|++++|. .+. .++......++|++|++++|..++.... ..+..+++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCE
Confidence 88888745553 455667778 88888888875 232 2222212246788888888875443222 13667788888
Q ss_pred eeecccc
Q 042986 1376 LAISGCD 1382 (1485)
Q Consensus 1376 L~l~~n~ 1382 (1485)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 8888874
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=155.13 Aligned_cols=82 Identities=11% Similarity=-0.078 Sum_probs=36.3
Q ss_pred ccEEEEeccCCcchHHhhc--ccCCCccEEEeecCCCccccC----cCCCCCCCcCEEEeeCCCCCcccCCCCcCccccc
Q 042986 1227 LKFLSIWHCSRLESIVERL--DNNTSLEVIEIVSCENLKILP----HGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLK 1300 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~l~----~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~ 1300 (1485)
|++|++++|...+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|......|..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4455555554444444443 444555555555544443222 1222344555555555433333333344444455
Q ss_pred eEEEcccc
Q 042986 1301 RLVIGGCK 1308 (1485)
Q Consensus 1301 ~L~l~~c~ 1308 (1485)
+|++++|.
T Consensus 173 ~L~Ls~N~ 180 (310)
T 4glp_A 173 SLDLSDNP 180 (310)
T ss_dssp EEECCSCT
T ss_pred EEECCCCC
Confidence 55555443
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.6e-12 Score=153.34 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=171.4
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc-----cCHH
Q 042986 212 NEAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD-----FDVI 286 (1485)
Q Consensus 212 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 286 (1485)
.+..+|||+++++.+.+ +. . +++.|+|++|+|||||++++.+... . ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 35679999999999998 72 1 5899999999999999999998532 1 2578876642 2334
Q ss_pred HHHHHHHHhhcC-------------C-------CC---------CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh---
Q 042986 287 WLTTIILRSITK-------------Q-------TI---------DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--- 334 (1485)
Q Consensus 287 ~~~~~il~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--- 334 (1485)
.....+.+.+.. . .. .....+.+.+.+.+.-+ ++++||+||++....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444333210 0 00 12345555555554322 499999999954211
Q ss_pred hhHhhcccccccCCCCcEEEEEccchhhhh-h---------c-CC-cCceeCCCCChhhHHHHHHhcccCCCCCCCChhH
Q 042986 335 NDWVDMSCPFEAGAPGSKIIVTTRNREVAA-I---------M-GT-VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSL 402 (1485)
Q Consensus 335 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~ 402 (1485)
.+|..+...+....++.++|+|++...... . . +. ...+++.+|+.+|+.+++.......+. .. ...
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH
Confidence 122222222222224678999999765321 1 1 11 246899999999999999875311111 11 111
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhHhhcCCChhHHHHH-hhccccCCCcccccchhHHH-hccc--cCChhhHhhhccccc
Q 042986 403 EEIGRKIVIKCNGLPLAAKTLGGLLRGKYSQCEWEGV-LSSKIWDLPEERCDIIPALR-VSYY--YLSAPLKQCFAYCSL 478 (1485)
Q Consensus 403 ~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~~~ 478 (1485)
.+|++.|+|+|+++..++..+....+...|..- .+.. ...+...+. +.++ .+|+..+..+..+|+
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 789999999999999998876543333333221 1100 001111111 2221 678889999999988
Q ss_pred cCCCcccChHHHHHHHH-HcCCCCCCCCCCChhhHHHHHHHHHHhcccccccCCCCCcEEE-echHHHH
Q 042986 479 FPKDYEFEEEEIVLLWC-ASGFLDHEENENPSEDLGHDFFKELHSRSFFQQSSNNTSRFVM-HDLINDL 545 (1485)
Q Consensus 479 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~~~~~~~~m-Hdlv~~~ 545 (1485)
+. +...+....- ..|. .........+++.|++.+++.... ..|.+ |++++++
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 21 4444432211 1121 012345678999999999998653 35664 6787765
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.1e-12 Score=143.11 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=126.9
Q ss_pred CcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
+|++++.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|+|++|......+..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 44579999999998888778889999999999999999888888889999999999999996554444557788999999
Q ss_pred EEccccCcccccc-CCCCCCccCEEEeeCCCCCccccC-CCCCCCCcceEEeCCCCCCccccccCcCCccccccceeecc
Q 042986 1303 VIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTE-DGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISG 1380 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1380 (1485)
++++|. ++.+|. .+.++++|+.|++++|. +..++. .....++|++|++++|......+ ..+..+++|++|++++
T Consensus 113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFG 188 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred EcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeC
Confidence 999964 556654 46789999999999974 445554 33346899999999997754333 3588899999999999
Q ss_pred ccc
Q 042986 1381 CDE 1383 (1485)
Q Consensus 1381 n~~ 1383 (1485)
|+.
T Consensus 189 N~~ 191 (251)
T 3m19_A 189 NQF 191 (251)
T ss_dssp CCB
T ss_pred Cce
Confidence 974
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.4e-12 Score=149.20 Aligned_cols=191 Identities=11% Similarity=0.090 Sum_probs=107.1
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.. ..++....+++|+.|++++|.... ++. +..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~~-~~~---~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLKN-VSA---IAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCSC-CGG---GTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCCC-chh---hcCCCCCC
Confidence 456788888888887653 44 577788888888888743 334434445667777777666433 231 35566666
Q ss_pred EEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCcccccccCCCCcccccc
Q 042986 1139 ILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISKNELPGALDHL 1218 (1485)
Q Consensus 1139 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~n~l~~~l~~~ 1218 (1485)
+|++++|. ++.++....
T Consensus 111 ~L~l~~n~-l~~~~~l~~-------------------------------------------------------------- 127 (308)
T 1h6u_A 111 TLDLTSTQ-ITDVTPLAG-------------------------------------------------------------- 127 (308)
T ss_dssp EEECTTSC-CCCCGGGTT--------------------------------------------------------------
T ss_pred EEECCCCC-CCCchhhcC--------------------------------------------------------------
Confidence 66666664 221111111
Q ss_pred cccCCcccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccc
Q 042986 1219 VVGNLPQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAK 1298 (1485)
Q Consensus 1219 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~ 1298 (1485)
+ ++|++|++++|......+ +..+++|+.|++++|.+... +. +..+++|++|++++|. +..++. +..+++
T Consensus 128 ----l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~ 196 (308)
T 1h6u_A 128 ----L-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK-ISDISP-LASLPN 196 (308)
T ss_dssp ----C-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred ----C-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc-cCcChh-hcCCCC
Confidence 1 135555665554433222 55666666666666654432 22 5666666666666663 333332 445566
Q ss_pred cceEEEccccCccccccCCCCCCccCEEEeeCCC
Q 042986 1299 LKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1299 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 1332 (1485)
|++|++++|. ++.++ .+..+++|+.|++++|+
T Consensus 197 L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 197 LIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CCEEEccCCc-cCccc-cccCCCCCCEEEccCCe
Confidence 6666666643 33443 25566666666666654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=1.7e-12 Score=147.07 Aligned_cols=168 Identities=18% Similarity=0.281 Sum_probs=120.3
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+++|+.|++++|.+..+|. +..+++|++|+|++|+++.+|. +.++++|++|++++| .+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 67889999999999988864 8889999999999999998877 899999999999998 5666654 899999999999
Q ss_pred cCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEe
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQW 783 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 783 (1485)
++|. +..++ .++.+++|+.|+.... .+..
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~l~~n------~l~~------------------------------------------- 148 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLYLGNN------KITD------------------------------------------- 148 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEECCSS------CCCC-------------------------------------------
T ss_pred CCCc-CCCCh-hhcCCCCCCEEEccCC------cCCc-------------------------------------------
Confidence 9987 66653 4666666666621110 0000
Q ss_pred ccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCceeE
Q 042986 784 TCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHLE 863 (1485)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 863 (1485)
+..+..+++|+.|+++++....++. +. .+++|+.|++++|.+.+ ++.+..+++|+.|+
T Consensus 149 ------------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 149 ------------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLE 206 (291)
T ss_dssp ------------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEE
T ss_pred ------------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEE
Confidence 0112334566666666666666554 22 36777777777777643 55677777777777
Q ss_pred ecCCC
Q 042986 864 VCGMS 868 (1485)
Q Consensus 864 L~~~~ 868 (1485)
+++|+
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 77654
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=7.1e-12 Score=138.82 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=60.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~ 1305 (1485)
|++|++++|......+..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|. +..+|. .+..+++|++|+++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECC
Confidence 6666666665554444555666666777776666555444455666677777777663 333433 35556666666666
Q ss_pred cccCccccccCCCCCCccCEEEeeCCC
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~ 1332 (1485)
+|......+..+..+++|+.|++++|+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 644332223345556666666666553
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=9.6e-14 Score=165.31 Aligned_cols=246 Identities=16% Similarity=0.102 Sum_probs=125.7
Q ss_pred hccccccccEEEecccCcccc----ccccccCCCCcceEeeccCCCc---cccCCC--------CCCCCCCEEEEecCCC
Q 042986 1057 QFGLSCRLERLELRDCQDLVK----LPKSLLSLSSLTEIRIHNCSSL---VSFPDA--------VLPSQLRVISIWDCGA 1121 (1485)
Q Consensus 1057 ~~~~~~~L~~L~Ls~~~~~~~----l~~~l~~l~~L~~L~L~~~~~l---~~~~~~--------~~~~~L~~L~l~~~~~ 1121 (1485)
.+..+++|++|+|++|.+... ++..+..+++|++|++++|... ..+|.. ...++|++|++++|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 345567899999999987755 3445778899999999887322 112211 1235566666666554
Q ss_pred CCc----CccccccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeee
Q 042986 1122 LKF----LPDAWMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIH 1197 (1485)
Q Consensus 1122 l~~----~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~ 1197 (1485)
... ++.. +.++++|++|++++|.. .......++..+.
T Consensus 107 ~~~~~~~l~~~--l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~------------------------------------ 147 (386)
T 2ca6_A 107 GPTAQEPLIDF--LSKHTPLEHLYLHNNGL-GPQAGAKIARALQ------------------------------------ 147 (386)
T ss_dssp CTTTHHHHHHH--HHHCTTCCEEECCSSCC-HHHHHHHHHHHHH------------------------------------
T ss_pred CHHHHHHHHHH--HHhCCCCCEEECcCCCC-CHHHHHHHHHHHH------------------------------------
Confidence 431 2222 23455555555555541 1100000000000
Q ss_pred cCCCcccccccCCCCcccccccccCCcccccEEEEeccCCc-chHH---hhcccCCCccEEEeecCCCcc-----ccCcC
Q 042986 1198 SCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRL-ESIV---ERLDNNTSLEVIEIVSCENLK-----ILPHG 1268 (1485)
Q Consensus 1198 ~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~L~~~~~~~-----~l~~~ 1268 (1485)
.+ ..+.+. +.. ++|++|++++|... ..++ ..+..+++|++|++++|.+.. ..+..
T Consensus 148 ~l-------~~~~~~--------~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 148 EL-------AVNKKA--------KNA-PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211 (386)
T ss_dssp HH-------HHHHHH--------HTC-CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred HH-------hhhhhc--------ccC-CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence 00 000000 000 24777777777655 3333 456667777777777776552 23335
Q ss_pred CCCCCCcCEEEeeCCCCC----cccCCCCcCccccceEEEccccCccc----cccCC--CCCCccCEEEeeCCCCCc---
Q 042986 1269 LHKLWRLQEIDIHGCENL----VSFPEGGLLSAKLKRLVIGGCKKLEA----LPLGM--HHLTCLQHLTIGGVPSLL--- 1335 (1485)
Q Consensus 1269 l~~l~~L~~L~L~~~~~l----~~~p~~~~~~~~L~~L~l~~c~~l~~----l~~~~--~~l~~L~~L~l~~~~~l~--- 1335 (1485)
+..+++|++|+|++|... ..+|..+..+++|++|++++|..... ++..+ ..+++|++|++++|..-.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 666777777777777532 44555555566677777776553222 23333 225666666666654332
Q ss_pred -cccCCC-CCCCCcceEEeCCCCC
Q 042986 1336 -CFTEDG-MFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1336 -~~~~~~-~~~~~L~~L~l~~~~~ 1357 (1485)
.++... ...++|++|++++|+.
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHhcCCCceEEEccCCcC
Confidence 133221 1124555555555544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=2.5e-12 Score=136.37 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=79.7
Q ss_pred ccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceee
Q 042986 623 FKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLK 702 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 702 (1485)
.++++|+.|++++|.+..+| .+..+++|++|++++|.++.+| .+..+++|++|++++|......|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 36788999999999999988 7889999999999999887765 688899999999999854445788899999999999
Q ss_pred ccCCCCcccccccccCccccccc
Q 042986 703 NSDTDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 703 l~~~~~l~~~p~~i~~L~~L~~L 725 (1485)
+++|......|..++.+++|++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEE
Confidence 99887333344445555554444
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=9.2e-14 Score=165.47 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=25.1
Q ss_pred ccccccccEEEecccCccc----cccccccCCCCcceEeeccCCC
Q 042986 1058 FGLSCRLERLELRDCQDLV----KLPKSLLSLSSLTEIRIHNCSS 1098 (1485)
Q Consensus 1058 ~~~~~~L~~L~Ls~~~~~~----~l~~~l~~l~~L~~L~L~~~~~ 1098 (1485)
+..+++|++|+|++|.+.. .+|..+..+++|++|+|++|..
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3455666666666666654 3555666666666666666643
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=1.3e-11 Score=132.44 Aligned_cols=148 Identities=18% Similarity=0.081 Sum_probs=114.6
Q ss_pred cccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceE
Q 042986 1224 PQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRL 1302 (1485)
Q Consensus 1224 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L 1302 (1485)
+++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 4579999999998776666678899999999999998876666667899999999999995 444554 46788899999
Q ss_pred EEccccCcccccc-CCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeecc
Q 042986 1303 VIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISG 1380 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1380 (1485)
++++|. ++.++. .+..+++|++|++++|.. ..++.. ....++|++|++++|+. ...+++|++|+++.
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWI 174 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHH
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHH
Confidence 999965 555554 477899999999998754 344443 33457899999999865 34567888999988
Q ss_pred ccc
Q 042986 1381 CDE 1383 (1485)
Q Consensus 1381 n~~ 1383 (1485)
|..
T Consensus 175 n~~ 177 (208)
T 2o6s_A 175 NKH 177 (208)
T ss_dssp HHC
T ss_pred HhC
Confidence 874
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.5e-12 Score=132.28 Aligned_cols=149 Identities=11% Similarity=0.081 Sum_probs=117.3
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
+|++|++++|... .++ .+..+++|+.|++++|.+ ..++ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5999999998665 555 588899999999999843 4444 68889999999999997665577788889999999999
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+|......|..+..+++|++|++++|..+..++. ....++|++|++++|... .++ .+..+++|++|++++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l~~l~~L~~L~l~~n~i~-~~~---~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DYR---GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-GGGCSSCCEEECTTBCCC-CCT---TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-hcCCCCCCEEECCCCCCc-ChH---HhccCCCCCEEEeeCccc
Confidence 9876666677788999999999999876666653 233578999999998764 343 378889999999999874
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=7.5e-11 Score=140.31 Aligned_cols=292 Identities=13% Similarity=0.010 Sum_probs=177.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----c--cCeeEEEEEcCcc-CHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----Y--FDLKAWTCVSDDF-DVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~~s~~~-~~~ 286 (1485)
..++||+++++++.+++.... .....+.+.|+|++|+||||+|+.+++...... . ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999999999998885421 123356899999999999999999998532211 1 2346777777766 788
Q ss_pred HHHHHHHHhhcCCCC--CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhc-ccccccCCCCcEEEEEccchhhh
Q 042986 287 WLTTIILRSITKQTI--DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDM-SCPFEAGAPGSKIIVTTRNREVA 363 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v~ 363 (1485)
.+...++.++.+... .......+...+.+.+..++.+||+||++......+... ...+.....+.+||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888888843322 223345667778888887777999999954311111111 11221111678899999875321
Q ss_pred h----hc--CCcCceeCCCCChhhHHHHHHhccc---CCCCCCCChhHHHHHHHHHHHcC---CChh-HHHHHHhHh--h
Q 042986 364 A----IM--GTVPAYQLKNLSIDDCLSVFAQHSL---GTRDFSSNKSLEEIGRKIVIKCN---GLPL-AAKTLGGLL--R 428 (1485)
Q Consensus 364 ~----~~--~~~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---g~PL-ai~~~~~~l--~ 428 (1485)
. .+ .-...+++.+++.++..++|...+. .... .+ .+..+.|++.++ |.|- |+.++..+. .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT--YD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS--CC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC--cC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 11 1123899999999999999998742 2221 12 234556777777 8876 444443332 2
Q ss_pred ---cCCChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccccCCCcccChHHHHHHHHHcCCCCCCCC
Q 042986 429 ---GKYSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIVLLWCASGFLDHEEN 505 (1485)
Q Consensus 429 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~ 505 (1485)
..-+.+++..++.... ...+.-++..|+.+.|..+..++....+-.+. +.....--..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 1224666766665321 23456677889988887776666511101110 11111111222 11
Q ss_pred CCChhhHHHHHHHHHHhccccccc
Q 042986 506 ENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 506 ~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
.........+++.|..+++++..
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12335577899999999999864
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=5.5e-12 Score=156.70 Aligned_cols=169 Identities=18% Similarity=0.276 Sum_probs=125.2
Q ss_pred ccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceee
Q 042986 623 FKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLK 702 (1485)
Q Consensus 623 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 702 (1485)
..++.|+.|++++|.+..+| .|+.+++|++|+|++|.|..+|. +..+.+|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 37788999999999998887 58899999999999999998877 899999999999998 567666 689999999999
Q ss_pred ccCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEE
Q 042986 703 NSDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQ 782 (1485)
Q Consensus 703 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 782 (1485)
+++|. +..+| .++.+++|+.|....+ .+..
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N------~l~~------------------------------------------ 145 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYLGNN------KITD------------------------------------------ 145 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEECCSS------CCCC------------------------------------------
T ss_pred ecCCC-CCCCc-cccCCCccCEEECCCC------ccCC------------------------------------------
Confidence 99988 66554 4666666666622110 0000
Q ss_pred eccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCcee
Q 042986 783 WTCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHL 862 (1485)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 862 (1485)
+..+..+++|+.|+++++....++. +. .+++|+.|+|++|.+.+ ++.+..+++|+.|
T Consensus 146 -------------------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L 202 (605)
T 1m9s_A 146 -------------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 202 (605)
T ss_dssp -------------------CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred -------------------chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEE
Confidence 0123345567777777776666654 32 47888888888887754 4677888888888
Q ss_pred EecCCC
Q 042986 863 EVCGMS 868 (1485)
Q Consensus 863 ~L~~~~ 868 (1485)
+|++|+
T Consensus 203 ~L~~N~ 208 (605)
T 1m9s_A 203 ELFSQE 208 (605)
T ss_dssp ECCSEE
T ss_pred EccCCc
Confidence 888764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=2.2e-11 Score=149.28 Aligned_cols=72 Identities=26% Similarity=0.412 Sum_probs=48.4
Q ss_pred cccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCccEEEE
Q 042986 1063 RLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLEILDI 1142 (1485)
Q Consensus 1063 ~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 1142 (1485)
+|+.|++++|.+.+ +|..+ +++|++|++++|.. +.+| ..+++|+.|++++|.... +|. + .. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l-~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l--~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNAL-ISLP--ELPASLEYLDACDNRLST-LPE-L--PA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCC-SCCC--CCCTTCCEEECCSSCCSC-CCC-C--CT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCC-cccc--cccCCCCEEEccCCCCCC-cch-h--hc--CCCEEEC
Confidence 78888888887654 66544 36788888888854 3666 446777777777776544 554 2 22 6777777
Q ss_pred ecCC
Q 042986 1143 RHCH 1146 (1485)
Q Consensus 1143 ~~c~ 1146 (1485)
++|.
T Consensus 128 s~N~ 131 (571)
T 3cvr_A 128 DNNQ 131 (571)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7765
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.5e-11 Score=150.83 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=115.3
Q ss_pred CcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccC
Q 042986 626 QRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSD 705 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 705 (1485)
.+|++|+|++|.++.+|..+. .+|++|+|++|+|+.+| ..+.+|++|++++| .+..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 378888888888888887764 78888888888888888 45788888888888 5666877 665 888888888
Q ss_pred CCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEecc
Q 042986 706 TDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQWTC 785 (1485)
Q Consensus 706 ~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 785 (1485)
|. +..+|. .+++|+.|+... +.+..+ .. .+++|+.|+++.+.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~------N~l~~l------------------p~----------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADN------NQLTML------------------PE----------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCS------SCCSCC------------------CC----------CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC---cCccccEEeCCC------CccCcC------------------CC----------cCCCcCEEECCCCC
Confidence 87 666776 566666662211 111100 00 23455666665443
Q ss_pred CCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCe-------eEEEEecCCCCCCCCCCCCCCC
Q 042986 786 SIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNL-------VTLKFQDCSMCTSVPSVGQLPS 858 (1485)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~ 858 (1485)
... ++. +. ++|+.|++++|....+|. +. .+| +.|+|++|.+....+.+..+++
T Consensus 172 L~~------------lp~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 172 LTF------------LPE-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDP 231 (571)
T ss_dssp CSC------------CCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred CCC------------cch-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCC
Confidence 110 111 22 677777777777777776 33 155 7777777777543224666777
Q ss_pred CceeEecCCCCce
Q 042986 859 LKHLEVCGMSRVK 871 (1485)
Q Consensus 859 L~~L~L~~~~~l~ 871 (1485)
|+.|+|++|+...
T Consensus 232 L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 232 TCTIILEDNPLSS 244 (571)
T ss_dssp TEEEECCSSSCCH
T ss_pred CCEEEeeCCcCCC
Confidence 7777777765433
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=3.8e-13 Score=158.27 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=30.5
Q ss_pred ccccEEEEeccCCcc----hHHhhcccCC-CccEEEeecCCCccccCc----CCCCC-CCcCEEEeeCCC
Q 042986 1225 QALKFLSIWHCSRLE----SIVERLDNNT-SLEVIEIVSCENLKILPH----GLHKL-WRLQEIDIHGCE 1284 (1485)
Q Consensus 1225 ~~L~~L~l~~~~~~~----~~~~~~~~l~-~L~~L~L~~~~~~~~l~~----~l~~l-~~L~~L~L~~~~ 1284 (1485)
.+|++|++++|.... .++..+..++ +|++|++++|.+....+. .+..+ ++|++|+|++|.
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 346666666665442 3344444444 666666666655443332 22233 366666666663
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=5.7e-13 Score=156.71 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=141.7
Q ss_pred ccccccccEEEecccCcccccc----ccccCCC-CcceEeeccCCCccccCCCC------CCCCCCEEEEecCCCCCcCc
Q 042986 1058 FGLSCRLERLELRDCQDLVKLP----KSLLSLS-SLTEIRIHNCSSLVSFPDAV------LPSQLRVISIWDCGALKFLP 1126 (1485)
Q Consensus 1058 ~~~~~~L~~L~Ls~~~~~~~l~----~~l~~l~-~L~~L~L~~~~~l~~~~~~~------~~~~L~~L~l~~~~~l~~~~ 1126 (1485)
+..+++|++|+|++|.+....+ ..+..++ +|++|++++|......+... .+++|++|++++|......+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3445669999999998776555 6778888 89999999985443222111 12788999999888554443
Q ss_pred ccc--ccCCC-CCccEEEEecCCCCccccCC-------CCCCCCceEEEecCCCccccccccCCCCCcccccccccEEee
Q 042986 1127 DAW--MLDNN-SSLEILDIRHCHSLTYVAGV-------QLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEI 1196 (1485)
Q Consensus 1127 ~~~--~~~~l-~~L~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i 1196 (1485)
..+ .+..+ ++|++|++++|. ++..+.. ..+.+|+.|++++|. +....
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~--------------------- 154 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKS--------------------- 154 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSC---------------------
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHH---------------------
Confidence 321 12334 788899998887 3333211 113456666665543 11000
Q ss_pred ecCCCcccccccCCCCcccccccccCCcccccEEEEeccCCcchHHh----hcccC-CCccEEEeecCCCcc----ccCc
Q 042986 1197 HSCPSLTCLISKNELPGALDHLVVGNLPQALKFLSIWHCSRLESIVE----RLDNN-TSLEVIEIVSCENLK----ILPH 1267 (1485)
Q Consensus 1197 ~~c~~L~~l~~~n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~L~~~~~~~----~l~~ 1267 (1485)
...+.. .+...+.+|++|++++|......+. .+..+ ++|+.|+|++|.+.. .++.
T Consensus 155 ---------------~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 155 ---------------SDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp ---------------HHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ---------------HHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 000000 0123344699999999977654443 44555 599999999998665 2454
Q ss_pred CCCC-CCCcCEEEeeCCCCCccc----CCCCcCccccceEEEccccC-------ccccccCCCCCCccCEEEeeCCC
Q 042986 1268 GLHK-LWRLQEIDIHGCENLVSF----PEGGLLSAKLKRLVIGGCKK-------LEALPLGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1268 ~l~~-l~~L~~L~L~~~~~l~~~----p~~~~~~~~L~~L~l~~c~~-------l~~l~~~~~~l~~L~~L~l~~~~ 1332 (1485)
.+.. .++|++|+|++|.....- ...+..+++|++|++++|.. +..++..+.++++|+.|++++|+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5555 358999999998543321 12234567788888888651 22334455566666666666654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=4.4e-12 Score=141.04 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=44.0
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+++|++|++++|.++.+| .++.+++|++|+|++|+|+.+|. +.++++|++|++++| .+..+|.... ++|++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 5555666666666555555 45555666666666666555554 555566666666555 3444443222 55555555
Q ss_pred cCCC
Q 042986 704 SDTD 707 (1485)
Q Consensus 704 ~~~~ 707 (1485)
++|.
T Consensus 114 ~~N~ 117 (263)
T 1xeu_A 114 DNNE 117 (263)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 5554
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=2.3e-10 Score=136.48 Aligned_cols=293 Identities=13% Similarity=0.048 Sum_probs=177.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~ 289 (1485)
..++||+++++++..++...- .......+.|+|++|+||||+|+.+++...... .-...+|+++....+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 669999999999999885421 123456888999999999999999998542110 01245778777777888889
Q ss_pred HHHHHhhcCCCC-CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChh-----hHhhcccccccC--CCCcEEEEEccc
Q 042986 290 TIILRSITKQTI-DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNENYN-----DWVDMSCPFEAG--APGSKIIVTTRN 359 (1485)
Q Consensus 290 ~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~~~-----~~~~l~~~l~~~--~~gs~iivTtr~ 359 (1485)
..++.+++.... ...+..++...+.+.+. +++.+||+||++..... ....+....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999998865432 23345666666776663 56899999999653211 111122211111 345678888876
Q ss_pred hhhhhhc-----CCc--CceeCCCCChhhHHHHHHhccc---CCCCCCCChhHHHHHHHHHHHcC---CCh-hHHHHHHh
Q 042986 360 REVAAIM-----GTV--PAYQLKNLSIDDCLSVFAQHSL---GTRDFSSNKSLEEIGRKIVIKCN---GLP-LAAKTLGG 425 (1485)
Q Consensus 360 ~~v~~~~-----~~~--~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---g~P-Lai~~~~~ 425 (1485)
......+ ... ..+.+.+++.++..+++.+.+. ..... ++ +..+.|++.++ |.| .|+.++..
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL--DP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB--CS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC--CH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5321111 111 3689999999999999988742 22211 12 34556777777 999 44444333
Q ss_pred Hhh-----c--CCChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhcccc-ccCCCcccChHHHHHHHH--
Q 042986 426 LLR-----G--KYSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCS-LFPKDYEFEEEEIVLLWC-- 495 (1485)
Q Consensus 426 ~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w~-- 495 (1485)
+.. + .-+.+++..++.... ...+.-++..||.+.+..+..++ ++-..-.+...++.+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 221 1 123566666654321 22355567889988887776665 342222344453333321
Q ss_pred --HcCCCCCCCCCCChhhHHHHHHHHHHhccccccc
Q 042986 496 --ASGFLDHEENENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 496 --a~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
..| +. ......+..+++.|...|+++..
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 12345678899999999999874
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=1.7e-11 Score=152.37 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=44.4
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|... .++....+++|+.|++++|.... ++. +..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~l~~-l~~---l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKD-LSS---LKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-CTT---STTCTTCC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChhhccCCCCCEEECcCCCCCC-Chh---hccCCCCC
Confidence 345667777777666542 33 4666677777777766433 33333344566666666665332 221 34555566
Q ss_pred EEEEecCC
Q 042986 1139 ILDIRHCH 1146 (1485)
Q Consensus 1139 ~L~l~~c~ 1146 (1485)
.|+|++|.
T Consensus 113 ~L~Ls~N~ 120 (605)
T 1m9s_A 113 SLSLEHNG 120 (605)
T ss_dssp EEECTTSC
T ss_pred EEEecCCC
Confidence 66665554
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=4.3e-11 Score=135.39 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=42.6
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCCCCCCEEEEecCCCCCcCccccccCCCCCcc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLPSQLRVISIWDCGALKFLPDAWMLDNNSSLE 1138 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1138 (1485)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|... .++....+++|+.|++++|.... ++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~-~~~---l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKD-LSS---LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCC-GGG---GTTCTTCC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcccccCCCCCEEECCCCcCCC-Chh---hccCCCCC
Confidence 345677777777776543 23 3666677777777776433 23323334555555555554322 221 24445555
Q ss_pred EEEEecCC
Q 042986 1139 ILDIRHCH 1146 (1485)
Q Consensus 1139 ~L~l~~c~ 1146 (1485)
+|++++|.
T Consensus 116 ~L~L~~n~ 123 (291)
T 1h6t_A 116 SLSLEHNG 123 (291)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 55555443
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=1.4e-10 Score=125.04 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=67.5
Q ss_pred cccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCccccceE
Q 042986 1224 PQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLSAKLKRL 1302 (1485)
Q Consensus 1224 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L 1302 (1485)
|++|++|++++|.+....+..|..+++|+.|+|++|.+.+..|..|.++++|++|+|++|. +..+|.. +..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEE
Confidence 3457777777776655555566777777777777777666666667777777777777774 3344443 4556667777
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCC
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 1332 (1485)
++++|......|..+.++++|+.|++++|.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 776654333334455566666666666543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=1.3e-10 Score=125.18 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=115.1
Q ss_pred cEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccc
Q 042986 1228 KFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGC 1307 (1485)
Q Consensus 1228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c 1307 (1485)
+.++++++. ++.+|..+. ++|+.|++++|.+....+..|..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555543 344454333 68999999999888777778999999999999999765556778889999999999996
Q ss_pred cCccccccC-CCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1308 KKLEALPLG-MHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1308 ~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
. ++.+|.. +.++++|+.|++++|......+......++|++|++++|......+ ..|..+++|++|++++|+.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCE
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCCc
Confidence 4 5666654 6789999999999986544444444456899999999998755433 3588899999999999975
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=1.4e-10 Score=125.90 Aligned_cols=131 Identities=20% Similarity=0.137 Sum_probs=85.6
Q ss_pred cccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceE
Q 042986 1224 PQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRL 1302 (1485)
Q Consensus 1224 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L 1302 (1485)
|++|++|++++|...+..+..|..+++|+.|+|++|.+....+..+..+++|++|+|++|. +..++. .+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeE
Confidence 3568888888887777667777788888888888877655545556778888888888874 444443 35667788888
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCC
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~ 1357 (1485)
++++| .++.+|..+..+++|+.|++++|. +..++.. ....++|+.|++++|+.
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88774 455777777777777777777653 3333321 12234555555555543
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.13 E-value=7.2e-10 Score=132.11 Aligned_cols=296 Identities=12% Similarity=0.048 Sum_probs=171.7
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-cCeeEEEEEcCccCHHHHHHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYY-FDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
+..++||+++++.+.+++.... .......+.|+|++|+||||||+.+++....... -...+|+.+....+...+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 3679999999999999886421 1234568899999999999999999984321110 124577777666677788888
Q ss_pred HHHhhcCCCC-CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHhhccccccc-CCCCcEEEEEccchhhh
Q 042986 292 ILRSITKQTI-DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNEN----YNDWVDMSCPFEA-GAPGSKIIVTTRNREVA 363 (1485)
Q Consensus 292 il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 363 (1485)
++.+++.... ...+..+..+.+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8887754322 22345555556665554 458999999995421 1122222222211 23355678888766433
Q ss_pred hhcC-----C--cCceeCCCCChhhHHHHHHhcccC-CCCCCCChhHHHHHHHHHHHcC---CChhHH-HHHHhHhh---
Q 042986 364 AIMG-----T--VPAYQLKNLSIDDCLSVFAQHSLG-TRDFSSNKSLEEIGRKIVIKCN---GLPLAA-KTLGGLLR--- 428 (1485)
Q Consensus 364 ~~~~-----~--~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~---g~PLai-~~~~~~l~--- 428 (1485)
..+. . ...+++.+++.++..+++.+.+.. ....... .+..+.|++.++ |.|..+ .++..+..
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2221 1 137999999999999999886421 1111112 345566777776 998743 43332221
Q ss_pred --c--CCChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccccCC-C-cccChHHHHHHH--HH--cC
Q 042986 429 --G--KYSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK-D-YEFEEEEIVLLW--CA--SG 498 (1485)
Q Consensus 429 --~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~w--~a--~g 498 (1485)
+ .-+.++++.++... ....+.-++..+|.+.+..+..++...+ + -.+...++.+.. ++ .|
T Consensus 254 ~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 12345555555421 1234555677888887777766664222 1 123333332221 11 12
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHhccccccc
Q 042986 499 FLDHEENENPSEDLGHDFFKELHSRSFFQQS 529 (1485)
Q Consensus 499 ~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~ 529 (1485)
+.+ ........+++.|...++++..
T Consensus 324 -~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 -VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 111 1224567889999999999763
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=1.1e-10 Score=136.76 Aligned_cols=157 Identities=15% Similarity=0.054 Sum_probs=124.3
Q ss_pred CcccccEEEEeccCCcchHHhhcc-cCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccC-CCCcCccccc
Q 042986 1223 LPQALKFLSIWHCSRLESIVERLD-NNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFP-EGGLLSAKLK 1300 (1485)
Q Consensus 1223 l~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p-~~~~~~~~L~ 1300 (1485)
+|..++.|+|++|.+....+..+. .+++|+.|+|++|.+....+..|..+++|++|+|++|. +..++ ..+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 445699999999987776677777 99999999999999888877889999999999999996 44554 4578889999
Q ss_pred eEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCC----CCCCCcceEEeCCCCCCccccccCcCCcccc--cc
Q 042986 1301 RLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDG----MFPTNLHSLEIDGMKIWKSLTESGGFHRLTS--LR 1374 (1485)
Q Consensus 1301 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~--L~ 1374 (1485)
+|++++|......|..+.++++|+.|+|++|. +..++... ..+++|+.|+|++|... .++. ..+..++. |+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~~l~~~~l~ 192 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL-TDLQKLPAWVKN 192 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-CCCH-HHHHHSCHHHHT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCH-HHhhhccHhhcc
Confidence 99999976555557788999999999999874 44455433 23689999999999764 3443 24667776 58
Q ss_pred ceeeccccc
Q 042986 1375 RLAISGCDE 1383 (1485)
Q Consensus 1375 ~L~l~~n~~ 1383 (1485)
.|++++|+.
T Consensus 193 ~l~l~~N~~ 201 (361)
T 2xot_A 193 GLYLHNNPL 201 (361)
T ss_dssp TEECCSSCE
T ss_pred eEEecCCCc
Confidence 999999874
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.13 E-value=2.3e-09 Score=127.82 Aligned_cols=297 Identities=11% Similarity=0.001 Sum_probs=180.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
..++||+++++++.+++........+..+.+.|+|++|+||||+|+.+++....... ...+|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 569999999999999986521101122348899999999999999999985322111 2456777777777888899998
Q ss_pred HhhcCCCC-CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhhcccccccC-C---CCcEEEEEccchhhhhhc
Q 042986 294 RSITKQTI-DNSDLNLLQEELKKQLS--RKKFLLVLDDVWNENYNDWVDMSCPFEAG-A---PGSKIIVTTRNREVAAIM 366 (1485)
Q Consensus 294 ~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LivlDdv~~~~~~~~~~l~~~l~~~-~---~gs~iivTtr~~~v~~~~ 366 (1485)
..++.... ...+...+.+.+.+.+. +++.+||+|+++..+......+...+... . .+..||++|+.......+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 88865432 12345556666655553 56899999999766444444444333221 1 466788888776443322
Q ss_pred C-------CcCceeCCCCChhhHHHHHHhcccCCC-CCCCChhHHHHHHHHHHHc---------CCChhHHHHH-HhHhh
Q 042986 367 G-------TVPAYQLKNLSIDDCLSVFAQHSLGTR-DFSSNKSLEEIGRKIVIKC---------NGLPLAAKTL-GGLLR 428 (1485)
Q Consensus 367 ~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~c---------~g~PLai~~~-~~~l~ 428 (1485)
. ....+.+.+++.++..+++...+.... .... -.+....|++.+ +|.|-.+..+ ..+..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 1 123699999999999999988753200 1111 135667788888 7887544333 22221
Q ss_pred -----cC--CChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhccccccC---CCcccChHHHHHHHHH--
Q 042986 429 -----GK--YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP---KDYEFEEEEIVLLWCA-- 496 (1485)
Q Consensus 429 -----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~w~a-- 496 (1485)
+. -+.++...+..... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 12233333332211 11122335678888888777777554 2224555666554433
Q ss_pred --cCCCCCCCCCCChhhHHHHHHHHHHhcccccccC
Q 042986 497 --SGFLDHEENENPSEDLGHDFFKELHSRSFFQQSS 530 (1485)
Q Consensus 497 --~g~i~~~~~~~~~e~~~~~~~~~L~~~sl~~~~~ 530 (1485)
.|.. .........++++|..++++....
T Consensus 323 ~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 2211 112345678999999999998743
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=2.5e-10 Score=123.96 Aligned_cols=149 Identities=21% Similarity=0.188 Sum_probs=118.2
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~ 1305 (1485)
.+.++.+++. ++.+|..+ .++|+.|+|++|.+.+..|..+..+++|++|+|++|. +..+|. .+..+++|++|+++
T Consensus 21 ~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence 5667776653 45556544 3899999999999999888899999999999999996 455654 46788999999999
Q ss_pred cccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1306 GCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1306 ~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+|. ++.++. .+..+++|+.|++++|. +..+|......++|++|++++|... .++. ..+..+++|++|++++|+.
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPH-GAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCT-TTTTTCTTCCEEECTTSCB
T ss_pred CCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCH-HHHhCCCCCCEEEeeCCCc
Confidence 964 555554 56889999999999875 4567766556789999999999764 4444 4588999999999999974
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.2e-10 Score=129.46 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=129.4
Q ss_pred cCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeec
Q 042986 624 KLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKN 703 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 703 (1485)
.+..+..++++++.++.++ .+..+.+|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 5667788889999999888 6889999999999999999998 7999999999999999 6777877 999999999999
Q ss_pred cCCCCcccccccccCcccccccCceEeccCCCCcccccccccccCCeeEEecccCCCCcchhHHhccCCCCCCceEEEEe
Q 042986 704 SDTDSLEEMPLGIGKLTCLRTLCNFAVGKDSGSRLRELKPLMHLRGTLNISKLENVKDVGDAEEAQLDGKKNLKVLMLQW 783 (1485)
Q Consensus 704 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 783 (1485)
++|. +..+|.... ++|++|.... ..+..
T Consensus 93 ~~N~-l~~l~~~~~--~~L~~L~L~~------N~l~~------------------------------------------- 120 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--ACLSRLFLDN------NELRD------------------------------------------- 120 (263)
T ss_dssp CSSC-CSCCTTCCC--SSCCEEECCS------SCCSB-------------------------------------------
T ss_pred CCCc-cCCcCcccc--CcccEEEccC------CccCC-------------------------------------------
Confidence 9998 777775333 7777772211 00100
Q ss_pred ccCCCCCCcchhhhHHHHhccCCCCCCcceEEEecCCCcccCcCCCccccCCeeEEEEecCCCCCCCCCCCCCCCCceeE
Q 042986 784 TCSIDSLSSREAETEKTVLEMLKPHKNLEQICISGFRGTKFPTWLGCSFFSNLVTLKFQDCSMCTSVPSVGQLPSLKHLE 863 (1485)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 863 (1485)
+..+..+++|+.|+++++....+|. +. .+++|+.|++++|.+.+. +.+..+++|+.|+
T Consensus 121 ------------------~~~l~~l~~L~~L~Ls~N~i~~~~~-l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 121 ------------------TDSLIHLKNLEILSIRNNKLKSIVM-LG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp ------------------SGGGTTCTTCCEEECTTSCCCBCGG-GG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred ------------------ChhhcCcccccEEECCCCcCCCChH-Hc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 0123445677777788877777763 32 478999999999988665 7788899999999
Q ss_pred ecCCC
Q 042986 864 VCGMS 868 (1485)
Q Consensus 864 L~~~~ 868 (1485)
+++|.
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 98875
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=3.5e-10 Score=121.14 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=108.4
Q ss_pred cEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEcc
Q 042986 1228 KFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIGG 1306 (1485)
Q Consensus 1228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~~ 1306 (1485)
+.++.+++.. ..+|.. ..++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l-~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGR-TSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCC-SSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCc-cCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCC
Confidence 3455555432 333432 34689999999998887666678899999999999995 445554 467789999999999
Q ss_pred ccCcccccc-CCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1307 CKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1307 c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
|. ++.+|. .+.++++|++|++++|.. ..++.. ....++|++|++++|.... ++. ..+..+++|++|++++|..
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~-~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKS-VPD-GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC-CCT-TTTTTCTTCCEEECCSCCB
T ss_pred Cc-CCccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccce-eCH-HHhccCCCccEEEecCCCe
Confidence 65 555554 468899999999998754 444443 3346889999999987643 443 3578899999999999863
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=2.7e-10 Score=122.73 Aligned_cols=135 Identities=11% Similarity=-0.091 Sum_probs=103.6
Q ss_pred cccccEEEEeccCCcchHH-hhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceE
Q 042986 1224 PQALKFLSIWHCSRLESIV-ERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRL 1302 (1485)
Q Consensus 1224 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L 1302 (1485)
|..+++|++++|......+ ..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|......+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3468889999887666543 457889999999999988877777788889999999999986544444457778899999
Q ss_pred EEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCC
Q 042986 1303 VIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIW 1358 (1485)
Q Consensus 1303 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 1358 (1485)
++++|......|..+.++++|+.|++++|......+......++|+.|++++|+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99997655555778888899999999887554444555555688999999998764
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=3e-10 Score=122.42 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=114.3
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccC-cCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILP-HGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
-+.+++++|.. +.+|..+ ...++.|++++|.+.+..+ ..+..+++|++|+|++|......+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCc-ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 45677777754 3455544 3467899999998877654 457889999999999996444444468888999999999
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccccccceeeccccc
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
+|......+..+.++++|++|++++|......+......++|++|++++|......+. .|..+++|++|++++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG--AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT--TTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH--HhcCCCCCCEEEecCcCC
Confidence 9765444455688999999999999866554455455568999999999987554443 588899999999999975
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=4e-10 Score=115.95 Aligned_cols=111 Identities=23% Similarity=0.199 Sum_probs=95.4
Q ss_pred ccccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccc-cChhhhccccccEecccccccccccc--cccc
Q 042986 617 SILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKT-LPESINKLYNLHTFLLEGCWRLKKLC--ADMG 693 (1485)
Q Consensus 617 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~-lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~ 693 (1485)
.++..+..+++|++|++++|.++.+ ..|+.+++|++|+|++|+++. +|..+..+++|++|++++| .+..+| ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh
Confidence 4444455889999999999999988 889999999999999999997 7888888999999999999 677776 6799
Q ss_pred CccccceeeccCCCCcccccc----cccCcccccccCceEe
Q 042986 694 NLIKLHHLKNSDTDSLEEMPL----GIGKLTCLRTLCNFAV 730 (1485)
Q Consensus 694 ~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 730 (1485)
.+++|++|++++|. +..+|. .++.+++|++|+...+
T Consensus 118 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999998 777776 6888999999865543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=2.2e-10 Score=115.16 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=92.1
Q ss_pred ccccccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccc-cChhhhccccccEecccccccccccc--cccc
Q 042986 617 SILPKLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKT-LPESINKLYNLHTFLLEGCWRLKKLC--ADMG 693 (1485)
Q Consensus 617 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~-lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~ 693 (1485)
.++..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.++. +|..++.+++|++|++++| .+..+| ..+.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHh
Confidence 4455556889999999999999888 789999999999999999997 7888888999999999999 567655 7899
Q ss_pred CccccceeeccCCCCcccccc----cccCcccccccC
Q 042986 694 NLIKLHHLKNSDTDSLEEMPL----GIGKLTCLRTLC 726 (1485)
Q Consensus 694 ~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~ 726 (1485)
.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 111 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 111 KLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp GCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred hCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 99999999999997 777775 578888888884
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=3.7e-10 Score=132.42 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=56.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCC----cCccccceE
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGG----LLSAKLKRL 1302 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~----~~~~~L~~L 1302 (1485)
|++|+|++|......+..|.++++|+.|+|++|.+....|..|..+++|++|+|++|. +..+|... ..+++|+.|
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence 5556666655444444455666666666666666665555666666666666666663 44444432 245566666
Q ss_pred EEccccCccccc-cCCCCCCc--cCEEEeeCCC
Q 042986 1303 VIGGCKKLEALP-LGMHHLTC--LQHLTIGGVP 1332 (1485)
Q Consensus 1303 ~l~~c~~l~~l~-~~~~~l~~--L~~L~l~~~~ 1332 (1485)
+|++| .++.+| ..+..++. |+.|++++|+
T Consensus 169 ~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 66664 334443 23334444 3556665544
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.2e-09 Score=126.29 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=62.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccc-eEEE
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLK-RLVI 1304 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~-~L~l 1304 (1485)
+..+.+.++-...........+++|+.|+|++|.+...-+..|.++++|++|+|.+| +..++. .|..+.+|+ .+++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 455555554222222222234666666666666554444455666666666666665 444443 355566666 6666
Q ss_pred ccccCccccc-cCCCCCCccCEEEeeCCCCCccccCC-CCCCCCcceEE
Q 042986 1305 GGCKKLEALP-LGMHHLTCLQHLTIGGVPSLLCFTED-GMFPTNLHSLE 1351 (1485)
Q Consensus 1305 ~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 1351 (1485)
.+ .++.++ ..|.++++|+.++++++ .+..++.. +.-.++|+.|+
T Consensus 282 ~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 65 344443 45666666666666543 33333332 22235555554
No 132
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.02 E-value=2.6e-09 Score=118.36 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=117.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++||+..++.+..++.... ...++.|+|++|+||||+|+.+++.......+... .... ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcc---cHH-HHHHh
Confidence 458999999999999996542 23478899999999999999998744322111000 0000 000 00111
Q ss_pred HhhcC-----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hh
Q 042986 294 RSITK-----QTIDNSDLNLLQEELKKQ----LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VA 363 (1485)
Q Consensus 294 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 363 (1485)
..... ........+.+...+... ..+++.+||+||++......+..+...+.....+.++|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000001112222211111 135689999999977655566666665555456788888887643 22
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhH
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGL 426 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 426 (1485)
.. ......+++.+++.++..+++.+.+...+. ..+ .+..+.|++.|+|.|..+..+...
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 122357999999999999999887643221 111 355778999999999988876543
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.99 E-value=2.6e-10 Score=117.30 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=72.3
Q ss_pred ccccEEEEeccCCc-chHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEE
Q 042986 1225 QALKFLSIWHCSRL-ESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLV 1303 (1485)
Q Consensus 1225 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~ 1303 (1485)
++|++|++++|... +.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666544 34555556666666666666654433 4555566666666666643333443333455566666
Q ss_pred EccccCccccc--cCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccc-cCcCCccccccceeecc
Q 042986 1304 IGGCKKLEALP--LGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTE-SGGFHRLTSLRRLAISG 1380 (1485)
Q Consensus 1304 l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~ 1380 (1485)
+++| .++.+| ..+..++ +|++|++++|+.....+. ...+..+++|++|++++
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~------------------------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLE------------------------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCS------------------------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCC-ccCcchhHHHHhcCC------------------------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 6554 233333 2344444 455555555543322210 01367788899999999
Q ss_pred cccc
Q 042986 1381 CDER 1384 (1485)
Q Consensus 1381 n~~~ 1384 (1485)
|...
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 8743
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=6.7e-10 Score=115.11 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=91.1
Q ss_pred cccccCC-cccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhh-hccccccEeccccccccccccc--cccCc
Q 042986 620 PKLFKLQ-RLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESI-NKLYNLHTFLLEGCWRLKKLCA--DMGNL 695 (1485)
Q Consensus 620 ~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L 695 (1485)
+.+..+. +|++|++++|.++.+ ..|+.+++|++|+|++|.|+.+|..+ ..+++|++|++++| .+..+|. .+..+
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASL 112 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGC
T ss_pred HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcC
Confidence 3445444 899999999999988 68899999999999999999998655 89999999999999 6788887 78999
Q ss_pred cccceeeccCCCCccccccc----ccCcccccccCceE
Q 042986 696 IKLHHLKNSDTDSLEEMPLG----IGKLTCLRTLCNFA 729 (1485)
Q Consensus 696 ~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~ 729 (1485)
++|++|++++|. +..+|.. ++.+++|+.|+...
T Consensus 113 ~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 113 KSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp TTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 999999999998 7788875 88889999886544
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=5.6e-10 Score=142.67 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=94.2
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccce
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 700 (1485)
.+..+..|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..|++|.+|++|+|++| .+..+|..|++|++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 34488999999999999999999898999999999999999999999999999999999999 57799999999999999
Q ss_pred eeccCCCCcccccccccCcccccccC
Q 042986 701 LKNSDTDSLEEMPLGIGKLTCLRTLC 726 (1485)
Q Consensus 701 L~l~~~~~l~~~p~~i~~L~~L~~L~ 726 (1485)
|+|++|. +..+|..|++|++|++|+
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred EECCCCC-CCccChhhhcCCCccEEe
Confidence 9999998 789999999999999883
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=8.6e-10 Score=115.81 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=82.1
Q ss_pred CcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccC-hhhhccccccEecccccccccccc-ccccCccccceeec
Q 042986 626 QRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLC-ADMGNLIKLHHLKN 703 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 703 (1485)
+.|++|+|++|.++.+|..|.++.+|++|+|++|.|+.+| ..|.++.+|++|+|++|. +..+| ..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 4788999999999989888889999999999999998875 568889999999999984 55554 46888999999999
Q ss_pred cCCCCccccccc-ccCcccccccCc
Q 042986 704 SDTDSLEEMPLG-IGKLTCLRTLCN 727 (1485)
Q Consensus 704 ~~~~~l~~~p~~-i~~L~~L~~L~~ 727 (1485)
++|. +..+|.+ +..+++|+.|..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCC-CCeeChhhhhcCccccEEEe
Confidence 9888 7777765 777888887743
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.92 E-value=9e-09 Score=111.92 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=113.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++||+..++.+.+++... ....+.|+|++|+|||++|+.+++..... .+. ..+.+..+.......+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---- 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVV---- 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHH----
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHH----
Confidence 45899999999999999543 22348899999999999999998743211 111 1223333332222221
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHh------CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhh-hhh
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQL------SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREV-AAI 365 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~ 365 (1485)
...+.... .+++.+||+||++......+..+...+.....+.++|+||+.... ...
T Consensus 86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp -----------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -----------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 11222221 257899999999776555555555555444567788888876532 111
Q ss_pred -cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 366 -MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 366 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
......+++.+++.++..+++.+.+...+. ..+ .+..+.|++.++|.|..+..+
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 122347899999999999999887642221 111 355677889999999865543
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.91 E-value=3.4e-10 Score=144.68 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=103.5
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEcc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGG 1306 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~ 1306 (1485)
+..+++..|. +...+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|. +..+|..+..+++|++|+|++
T Consensus 203 i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTT
T ss_pred ccCccccccc-eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcC
Confidence 3344444442 2345677888899999999888866 667677788999999999884 557888788888999999998
Q ss_pred ccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCccccccCcCCccc-cccceeeccccccc
Q 042986 1307 CKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWKSLTESGGFHRLT-SLRRLAISGCDERM 1385 (1485)
Q Consensus 1307 c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~ 1385 (1485)
|. ++.+|..+.++++|++|+|++| .+..+|.....+++|+.|+|++|+....++. .+..+. .+..|++++|...
T Consensus 280 N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~~~~~~~l~l~~N~l~- 354 (727)
T 4b8c_D 280 NR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK--ILTEKSVTGLIFYLRDNRPE- 354 (727)
T ss_dssp SC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH--HHHHHHHHHHHHHHHHCCCC-
T ss_pred Cc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH--HHhhcchhhhHHhhccCccc-
Confidence 65 5588888888899999999887 4567777655568899999998887665554 222222 2334778887642
Q ss_pred ccccccccccccCCCCCccceeecccC
Q 042986 1386 VVSFPLEDIGLGTTLPACLTHLDIFNF 1412 (1485)
Q Consensus 1386 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 1412 (1485)
+.+|..|+.|+++..
T Consensus 355 ------------~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 355 ------------IPLPHERRFIEINTD 369 (727)
T ss_dssp ------------CCCCCC---------
T ss_pred ------------CcCccccceeEeecc
Confidence 346777888877654
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=6e-10 Score=111.93 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=89.4
Q ss_pred cCCcccEEEecCCCCC--CCCCccCCCCcccEEeccCCcccccChhhhccccccEecccccccccc-ccccccCccccce
Q 042986 624 KLQRLRVFSLRGYHNP--ELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKK-LCADMGNLIKLHH 700 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~ 700 (1485)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 4578999999999998 8999999999999999999999988 789999999999999995 555 8888888999999
Q ss_pred eeccCCCCccccc--ccccCcccccccCc
Q 042986 701 LKNSDTDSLEEMP--LGIGKLTCLRTLCN 727 (1485)
Q Consensus 701 L~l~~~~~l~~~p--~~i~~L~~L~~L~~ 727 (1485)
|++++|. +..+| ..++.+++|++|+.
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 9999998 77765 67888999988843
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=2.1e-08 Score=115.84 Aligned_cols=264 Identities=14% Similarity=0.051 Sum_probs=138.1
Q ss_pred cccccEEEecccCcc--ccccccccCCCCcceEeeccCCCccccCCCC--C--------CCCCCEEEEecCCCCCcCccc
Q 042986 1061 SCRLERLELRDCQDL--VKLPKSLLSLSSLTEIRIHNCSSLVSFPDAV--L--------PSQLRVISIWDCGALKFLPDA 1128 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~--~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~--------~~~L~~L~l~~~~~l~~~~~~ 1128 (1485)
+++|+.|+|++|++. ...+ ..++.+..+.+..+ .+|... . +++|+.|.+.+ . ++.++..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTT
T ss_pred hccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHH
Confidence 678999999999876 2211 12222334444433 344333 2 56788888777 3 4444443
Q ss_pred cccCCCCCccEEEEecCCCCccccCCCCCCCCceEEEecCCCccccccccCCCCCcccccccccEEeeecCCCccccccc
Q 042986 1129 WMLDNNSSLEILDIRHCHSLTYVAGVQLPPSLKQLEIYSCDNIRTLTVEEGDHNSSRRHTSLLEFLEIHSCPSLTCLISK 1208 (1485)
Q Consensus 1129 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~L~~l~i~~c~~L~~l~~~ 1208 (1485)
. +.+|++|+.|++.+|. +..++...+. +|.++..++...... ......+....+.+|..|+.
T Consensus 119 a-F~~~~~L~~l~l~~n~-i~~i~~~aF~---------~~~~l~~l~~~~~~~---~~~~~~i~~~~f~~~~~L~~---- 180 (329)
T 3sb4_A 119 A-FKGCDNLKICQIRKKT-APNLLPEALA---------DSVTAIFIPLGSSDA---YRFKNRWEHFAFIEGEPLET---- 180 (329)
T ss_dssp T-TTTCTTCCEEEBCCSS-CCEECTTSSC---------TTTCEEEECTTCTHH---HHTSTTTTTSCEEESCCCEE----
T ss_pred H-hhcCcccceEEcCCCC-ccccchhhhc---------CCCceEEecCcchhh---hhccccccccccccccccce----
Confidence 2 5778888888888775 3333333332 233333332211000 00001122223333443331
Q ss_pred CCCCcccccccccCCcccccEEEEeccCCcchH-HhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCc
Q 042986 1209 NELPGALDHLVVGNLPQALKFLSIWHCSRLESI-VERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLV 1287 (1485)
Q Consensus 1209 n~l~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~ 1287 (1485)
.+.+.....+... ...-....++..+.+.++-...........+++|++|+|++|. +.
T Consensus 181 --------------------~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~ 239 (329)
T 3sb4_A 181 --------------------TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-AT 239 (329)
T ss_dssp --------------------EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CC
T ss_pred --------------------eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cc
Confidence 2233322221111 1111234566667666642222221111236788888888774 55
Q ss_pred ccCCC-CcCccccceEEEccccCcccccc-CCCCCCccC-EEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccc
Q 042986 1288 SFPEG-GLLSAKLKRLVIGGCKKLEALPL-GMHHLTCLQ-HLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTE 1363 (1485)
Q Consensus 1288 ~~p~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~-~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 1363 (1485)
.+|.. |..+++|++|++.++ ++.++. .|.++++|+ .+++.+ .+..++.. +..+++|+.|+++++.. +.++.
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i-~~I~~ 314 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI-TTLGD 314 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC-CEECT
T ss_pred eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc-Cccch
Confidence 55544 667778888888774 555544 567788888 888876 45555433 33457788888876654 34444
Q ss_pred cCcCCccccccceee
Q 042986 1364 SGGFHRLTSLRRLAI 1378 (1485)
Q Consensus 1364 ~~~~~~l~~L~~L~l 1378 (1485)
..|.++++|+.++.
T Consensus 315 -~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 -ELFGNGVPSKLIYK 328 (329)
T ss_dssp -TTTCTTCCCCEEEC
T ss_pred -hhhcCCcchhhhcc
Confidence 46778888887753
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=2.1e-09 Score=132.72 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=64.7
Q ss_pred cccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccCC
Q 042986 627 RLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSDT 706 (1485)
Q Consensus 627 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 706 (1485)
.|++|+|++|.++.+|. |+.+++|++|+|++|+|+.+|..|+++++|++|+|++| .+..+| .++.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 36667777777766665 66777777777777777777777777777777777776 455566 6677777777777766
Q ss_pred CCcccc--cccccCccccccc
Q 042986 707 DSLEEM--PLGIGKLTCLRTL 725 (1485)
Q Consensus 707 ~~l~~~--p~~i~~L~~L~~L 725 (1485)
. +..+ |..++.+++|+.|
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEE
T ss_pred C-CCCCCCcHHHhcCCCCCEE
Confidence 6 5555 6666666666666
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=2.3e-09 Score=110.24 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=78.1
Q ss_pred CcccEEEecCCCCCCC-CCccCCCCcccEEeccCCcccccChh-hhccccccEecccccccccccccc-ccCccccceee
Q 042986 626 QRLRVFSLRGYHNPEL-PDSIGNLRNLRYLNLSGTNIKTLPES-INKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLK 702 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 702 (1485)
+.|++|+|++|.+..+ |..|+++++|++|+|++|+|+.+|.. |.++.+|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999888 56789999999999999999999865 589999999999998 67777776 88999999999
Q ss_pred ccCCCCcccccccccCcc
Q 042986 703 NSDTDSLEEMPLGIGKLT 720 (1485)
Q Consensus 703 l~~~~~l~~~p~~i~~L~ 720 (1485)
+++|. +...|..+..+.
T Consensus 112 L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 112 LYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp CCSSC-BCTTBGGGHHHH
T ss_pred eCCCC-cccccccHHHHH
Confidence 99998 666665554444
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=1.7e-09 Score=112.04 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=88.3
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCC-cccEEeccCCcccccChhhhccccccEeccccccccccccccc-cCcccc
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLR-NLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADM-GNLIKL 698 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L 698 (1485)
.+.++..|++|++++|.++.+|. +..+. +|++|+|++|.|+.+ ..+..+++|++|++++| .+..+|..+ ..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 34578899999999999999965 55555 999999999999988 67999999999999999 677888765 899999
Q ss_pred ceeeccCCCCcccccc--cccCcccccccC
Q 042986 699 HHLKNSDTDSLEEMPL--GIGKLTCLRTLC 726 (1485)
Q Consensus 699 ~~L~l~~~~~l~~~p~--~i~~L~~L~~L~ 726 (1485)
++|++++|. +..+|. .++.+++|+.|.
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence 999999998 788886 678888888873
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.85 E-value=8.3e-09 Score=108.38 Aligned_cols=82 Identities=13% Similarity=-0.037 Sum_probs=33.7
Q ss_pred cccEEEEeccCCcchHHh-hcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVE-RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l 1304 (1485)
+|++|++++|...+..+. .+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|......+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444433222221 2444444444444444444444444444444444444444322222222333444444444
Q ss_pred ccc
Q 042986 1305 GGC 1307 (1485)
Q Consensus 1305 ~~c 1307 (1485)
++|
T Consensus 110 ~~N 112 (192)
T 1w8a_A 110 YDN 112 (192)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.84 E-value=6.2e-09 Score=109.37 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=101.8
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCc-CCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPH-GLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~ 1305 (1485)
-+.++++++.. +.+|..+. .+|+.|++++|.+.+..+. .+..+++|++|+|++|......|..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 46677777754 55665443 3899999999987666554 48899999999999997666667888899999999999
Q ss_pred cccCccccccCCCCCCccCEEEeeCCCCCccccCCCCCCCCcceEEeCCCCCCc
Q 042986 1306 GCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGMFPTNLHSLEIDGMKIWK 1359 (1485)
Q Consensus 1306 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 1359 (1485)
+|......+..+.++++|++|++++|......+......++|++|++++|+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 976555555568899999999999987665556555556899999999998754
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=8.4e-09 Score=108.21 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=78.4
Q ss_pred cccccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEE
Q 042986 1224 PQALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLV 1303 (1485)
Q Consensus 1224 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~ 1303 (1485)
|++|++|++++|... .+|..|.++++|+.|++++|.+.+..+..|.++++|++|+|++|......|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 356888888888654 5667788888888888888888777777788888888888888854444444577778888888
Q ss_pred EccccCcccccc-CCCCCCccCEEEeeCCC
Q 042986 1304 IGGCKKLEALPL-GMHHLTCLQHLTIGGVP 1332 (1485)
Q Consensus 1304 l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~ 1332 (1485)
+++|. ++.+|. .+..+++|+.|++++|+
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 88854 455554 45667777777776654
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=3.9e-09 Score=130.36 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=90.4
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccc--cccccCcccc
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKL--CADMGNLIKL 698 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L 698 (1485)
.+..+++|++|+|++|.++.+|..|+++++|++|+|++|+|+.+| .++++++|++|+|++| .+..+ |..++.|++|
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCC
Confidence 366899999999999999999999999999999999999999999 8999999999999999 56666 8999999999
Q ss_pred ceeeccCCCCcccccccccC----ccccccc
Q 042986 699 HHLKNSDTDSLEEMPLGIGK----LTCLRTL 725 (1485)
Q Consensus 699 ~~L~l~~~~~l~~~p~~i~~----L~~L~~L 725 (1485)
++|++++|. +..+|..+.. +++|+.|
T Consensus 536 ~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 999999998 7777765433 5666655
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=6.3e-09 Score=106.99 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=86.2
Q ss_pred ccEEEecCCCCCCCCCccCCCCcccEEeccCCccccc-ChhhhccccccEecccccccccccccc-ccCccccceeeccC
Q 042986 628 LRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLKNSD 705 (1485)
Q Consensus 628 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 705 (1485)
-+.++++++.++.+|..+. .+|++|+|++|+|+.+ |..|.++.+|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3789999999999999875 8999999999999988 678999999999999999 67888876 58999999999999
Q ss_pred CCCccccccc-ccCcccccccCce
Q 042986 706 TDSLEEMPLG-IGKLTCLRTLCNF 728 (1485)
Q Consensus 706 ~~~l~~~p~~-i~~L~~L~~L~~~ 728 (1485)
|. +..+|.+ ++.+++|++|...
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECC
T ss_pred Cc-cceeCHHHhccccCCCEEEeC
Confidence 98 8888876 8889999988543
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=4.7e-11 Score=126.59 Aligned_cols=94 Identities=26% Similarity=0.296 Sum_probs=52.3
Q ss_pred ccEEEecCC--CCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccceeeccC
Q 042986 628 LRVFSLRGY--HNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHHLKNSD 705 (1485)
Q Consensus 628 Lr~L~L~~~--~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 705 (1485)
|+.+.+.++ .++.+|..|+.+++|++|+|++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC
Confidence 344444433 34455555666666666666666666665 5666666666666666 4555565555556666666666
Q ss_pred CCCcccccccccCccccccc
Q 042986 706 TDSLEEMPLGIGKLTCLRTL 725 (1485)
Q Consensus 706 ~~~l~~~p~~i~~L~~L~~L 725 (1485)
|. +..+| .++.+++|++|
T Consensus 103 N~-l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 103 NQ-IASLS-GIEKLVNLRVL 120 (198)
T ss_dssp EE-CCCHH-HHHHHHHSSEE
T ss_pred Cc-CCcCC-ccccCCCCCEE
Confidence 54 44444 34444444443
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=3e-08 Score=114.54 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=114.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+.+++... ..+.+.++|++|+||||+|+.+++...........+++..+...... ..++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID-VVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH-HHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH-HHHHHH
Confidence 45899999999999998543 22338899999999999999999743211111112333333222211 112222
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhh-cCCcC
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQL-SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAI-MGTVP 370 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~ 370 (1485)
+.+.... ..+ .+++.+||+||++......+..+...+.....+.++|+||+... +... .....
T Consensus 94 ~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 2211000 011 45689999999977655556666655554456778888886643 2121 12334
Q ss_pred ceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHHHhH
Q 042986 371 AYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTLGGL 426 (1485)
Q Consensus 371 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~~ 426 (1485)
.+++.+++.++..+++...+...+. ..+ .+....|++.++|.|. |+..+...
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7999999999999999886532211 111 3556789999999994 45555444
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=1.2e-08 Score=104.48 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=45.2
Q ss_pred CcccEEEecCCCCCCC-CCccCCCCcccEEeccCCcccccChh-hhccccccEecccccccccccccc-ccCccccceee
Q 042986 626 QRLRVFSLRGYHNPEL-PDSIGNLRNLRYLNLSGTNIKTLPES-INKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLK 702 (1485)
Q Consensus 626 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 702 (1485)
+.|++|+|++|.++.+ |..|.++.+|++|+|++|+|+.+|.. |.++.+|++|+|++| .+..+|.. +..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 4555666666665555 34455566666666666666555432 355666666666655 34444443 55556666666
Q ss_pred ccCCC
Q 042986 703 NSDTD 707 (1485)
Q Consensus 703 l~~~~ 707 (1485)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 65554
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=2.6e-08 Score=103.26 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=37.9
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l 1304 (1485)
+|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence 45555555554443333344555555555555554443333334555555555555553 222222 2334444555555
Q ss_pred ccc
Q 042986 1305 GGC 1307 (1485)
Q Consensus 1305 ~~c 1307 (1485)
++|
T Consensus 108 ~~N 110 (177)
T 2o6r_A 108 DTN 110 (177)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.74 E-value=1.3e-08 Score=117.63 Aligned_cols=268 Identities=15% Similarity=0.085 Sum_probs=142.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+..++..... .......+.|+|++|+|||++|+.+++.. ... ..++..+.-....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCC---EEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEeccccCChH-------
Confidence 4689999999988888753110 11123567899999999999999998743 222 2333322221111
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC------------------CCCcEEEE
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG------------------APGSKIIV 355 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iiv 355 (1485)
++...+...+ .++.+|++||+..........+...+... .++.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111111 34568889999765433333332222110 12456777
Q ss_pred Eccchh-hhhhc-CC-cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHHhHhhc---
Q 042986 356 TTRNRE-VAAIM-GT-VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLGGLLRG--- 429 (1485)
Q Consensus 356 Ttr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~--- 429 (1485)
||.... +...+ .. ...+.+.+++.++..+++.+.+...+. ..+ .+....+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 21111 11 247899999999999998887643221 111 356778899999999877665443321
Q ss_pred ---C--CChhHHHHHhhccccCCCcccccchhHHHhccccCChhhHhhhcccc-ccCCC----------cccChHHHHH-
Q 042986 430 ---K--YSQCEWEGVLSSKIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCS-LFPKD----------YEFEEEEIVL- 492 (1485)
Q Consensus 430 ---~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~li~- 492 (1485)
. -+.+....++.. +...+..++...+..+.... .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 123333333322 11223334443333333322 11111 1133333332
Q ss_pred ---HHHHcCCCCCCCCCCChhhHHHHHHH-HHHhcccccc
Q 042986 493 ---LWCASGFLDHEENENPSEDLGHDFFK-ELHSRSFFQQ 528 (1485)
Q Consensus 493 ---~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~~sl~~~ 528 (1485)
+-+..|++.....+....+.|..||. ++.+|+++|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 35667888765556677889999998 8999999885
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=6.8e-07 Score=105.18 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=42.4
Q ss_pred cccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCC-CCCCCEEEEecCCCCCcCccccccCCCCCccE
Q 042986 1061 SCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVL-PSQLRVISIWDCGALKFLPDAWMLDNNSSLEI 1139 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 1139 (1485)
+..++.+.|.+ .+...-..+|.++ +|+.+.+.++ ++.++...+ ..+|+.+.+.+ .+..++... +.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~a-F~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDI-FYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSST-TTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHH-hhCcccCCe
Confidence 35566666654 2222233456664 6777777654 445544332 24577766654 233333322 466777777
Q ss_pred EEEecCC
Q 042986 1140 LDIRHCH 1146 (1485)
Q Consensus 1140 L~l~~c~ 1146 (1485)
+++.+|.
T Consensus 185 l~l~~n~ 191 (401)
T 4fdw_A 185 ADLSKTK 191 (401)
T ss_dssp EECTTSC
T ss_pred eecCCCc
Confidence 7776553
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=1.7e-08 Score=103.51 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=86.4
Q ss_pred ccEEEecCCCCCCCCCccCCCCcccEEeccCCccccc-ChhhhccccccEecccccccccccccc-ccCccccceeeccC
Q 042986 628 LRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTL-PESINKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLKNSD 705 (1485)
Q Consensus 628 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 705 (1485)
.+++++++|.++.+|..+. .+|++|+|++|+|+.+ |..|.++.+|++|+|++| .+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5789999999999998774 8999999999999988 678999999999999999 57777766 58999999999999
Q ss_pred CCCccccccc-ccCcccccccCceEe
Q 042986 706 TDSLEEMPLG-IGKLTCLRTLCNFAV 730 (1485)
Q Consensus 706 ~~~l~~~p~~-i~~L~~L~~L~~~~~ 730 (1485)
|. +..+|.+ ++.+++|++|....+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 98 7888875 889999999865444
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.68 E-value=8.1e-08 Score=99.45 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=77.0
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIG 1305 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~ 1305 (1485)
.+.++++++.. ..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECC
Confidence 55666666643 3344322 3678888888887766555567788888888888884 444443 35677788888888
Q ss_pred cccCcccccc-CCCCCCccCEEEeeCCCCCccccCCC-CCCCCcceEEeCCCCC
Q 042986 1306 GCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDG-MFPTNLHSLEIDGMKI 1357 (1485)
Q Consensus 1306 ~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~ 1357 (1485)
+|. ++.+|. .+..+++|++|++++|. +..++... ...++|++|++++|+.
T Consensus 85 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 854 444443 45667777777777663 33344322 2235555555555544
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=5.7e-10 Score=118.21 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=82.2
Q ss_pred ccccCCcccEEEecCCCCCCCCCccCCCCcccEEeccCCcccccChhhhccccccEeccccccccccccccccCccccce
Q 042986 621 KLFKLQRLRVFSLRGYHNPELPDSIGNLRNLRYLNLSGTNIKTLPESINKLYNLHTFLLEGCWRLKKLCADMGNLIKLHH 700 (1485)
Q Consensus 621 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 700 (1485)
.+..+++|++|++++|.+..+| .++++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5557888899999888888888 788888899999999888888888888888999999888 566776 5888888999
Q ss_pred eeccCCCCcccccc--cccCccccccc
Q 042986 701 LKNSDTDSLEEMPL--GIGKLTCLRTL 725 (1485)
Q Consensus 701 L~l~~~~~l~~~p~--~i~~L~~L~~L 725 (1485)
|++++|. +..+|. .++.+++|++|
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 9888887 666553 46777777776
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=1.4e-06 Score=102.37 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=55.7
Q ss_pred ccEEEEeccCCcchHHhhcccCCCccEEEeecCCCc-----cccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccc
Q 042986 1227 LKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENL-----KILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLK 1300 (1485)
Q Consensus 1227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~ 1300 (1485)
|+.+.+..+ ....-...|.+|++|+.+++.++... ..-+..|.++++|+.++|.++ +..++. .|..+.+|+
T Consensus 250 L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 250 ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCC
T ss_pred ccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCcc
Confidence 555555332 22222455677777777777665443 233456677777777777642 444443 355566777
Q ss_pred eEEEccccCccccc-cCCCCCCccCEEEeeCC
Q 042986 1301 RLVIGGCKKLEALP-LGMHHLTCLQHLTIGGV 1331 (1485)
Q Consensus 1301 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~ 1331 (1485)
.+++.++ ++.++ ..|.++ +|+.+++.++
T Consensus 327 ~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 327 QLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred EEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 7777442 44443 345555 6666666654
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=4.2e-07 Score=105.05 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=111.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CeeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF-DLKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++..... .+ ...+.+..+...... ..+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchH-HHHHH
Confidence 35899999999999998654 23348899999999999999999743111 11 112223222211110 01111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhhc-C
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQ--L-SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAIM-G 367 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~ 367 (1485)
+.. .... + .+++.++|+||++......+..+...+.....+.++|+||.... +...+ .
T Consensus 97 ~~~-----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 97 VKE-----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HHH-----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHH-----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 111 1110 1 25688999999977655556666555554456788888887643 11111 1
Q ss_pred CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 042986 368 TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLG 424 (1485)
Q Consensus 368 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 424 (1485)
....+++.+++.++..+++.+.+...+. .. -.+....|++.++|.|-.+..+.
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC-EE---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 2247899999999999999877643221 11 13566778899999998655443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=5.7e-06 Score=97.95 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=40.4
Q ss_pred hhcccCCCccEEEeecCCCcccc-CcCCCCCCCcCEEEeeCCCCCcccCC-CCcCccccceEEEccccCccccccCCCCC
Q 042986 1243 ERLDNNTSLEVIEIVSCENLKIL-PHGLHKLWRLQEIDIHGCENLVSFPE-GGLLSAKLKRLVIGGCKKLEALPLGMHHL 1320 (1485)
Q Consensus 1243 ~~~~~l~~L~~L~L~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 1320 (1485)
..|.+|++|+.++|.++ +..+ ...|.++++|+.+++..+ +..++. .|..+.+|+.+++..+ ++.+...+.++
T Consensus 314 ~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c 387 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDT 387 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTT
T ss_pred hhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCC
Confidence 44566666666666432 2222 345666666666666543 333432 3555566666666542 33333445555
Q ss_pred CccCEE
Q 042986 1321 TCLQHL 1326 (1485)
Q Consensus 1321 ~~L~~L 1326 (1485)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 555543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=1.9e-07 Score=108.96 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=42.1
Q ss_pred cccCCcccEEEecC-CCCCCCC-CccCCCCcccEEeccCCcccccC-hhhhccccccEeccccccccccccccccCcccc
Q 042986 622 LFKLQRLRVFSLRG-YHNPELP-DSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCWRLKKLCADMGNLIKL 698 (1485)
Q Consensus 622 ~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 698 (1485)
+..+.+|++|+|++ |.+..+| ..|++|.+|++|+|++|+|+.+| ..|.+|.+|++|+|++| .+..+|..+.....|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 33455555555553 5555554 34555555555555555555443 34455555555555555 344444443322225
Q ss_pred ceeeccCCC
Q 042986 699 HHLKNSDTD 707 (1485)
Q Consensus 699 ~~L~l~~~~ 707 (1485)
++|++.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 555555544
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.4e-06 Score=97.03 Aligned_cols=207 Identities=12% Similarity=0.018 Sum_probs=124.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc------ccCeeEEEEEcCccCHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY------YFDLKAWTCVSDDFDVIWL 288 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~~~~ 288 (1485)
.+.||+++.++|...|...- .++....+.|+|++|+|||++|+.|++...... .| ..+.|+...-.+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 37899999999998885431 234567889999999999999999998653211 12 3456666666778889
Q ss_pred HHHHHHhhcCCCCC-CCCHHHHHHHHHHH--hCCCcEEEEEeCCCCCC-hhhHhhcccccccCCCCcE--EEEEccchhh
Q 042986 289 TTIILRSITKQTID-NSDLNLLQEELKKQ--LSRKKFLLVLDDVWNEN-YNDWVDMSCPFEAGAPGSK--IIVTTRNREV 362 (1485)
Q Consensus 289 ~~~il~~l~~~~~~-~~~~~~~~~~l~~~--l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~~~~gs~--iivTtr~~~v 362 (1485)
...|.+++.+.... ....+.+...+... -.+++++++||+++.-. +.....+.. ++. ..+++ ||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~-~~~-~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK-WIS-SKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH-HHH-CSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh-ccc-ccCCcEEEEEEecCccc
Confidence 99999999654322 22334444444332 24568999999996643 111111111 111 12333 3344444322
Q ss_pred h---------hhcCCcCceeCCCCChhhHHHHHHhcccCCCC-----------------------------------CCC
Q 042986 363 A---------AIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRD-----------------------------------FSS 398 (1485)
Q Consensus 363 ~---------~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-----------------------------------~~~ 398 (1485)
. ..++ ...+.+.+.+.+|-.+++.+++-.... .-.
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence 1 1111 246899999999999988887532110 012
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHhHh
Q 042986 399 NKSLEEIGRKIVIKCNGLPLAAKTLGGLL 427 (1485)
Q Consensus 399 ~~~~~~~~~~i~~~c~g~PLai~~~~~~l 427 (1485)
+..++-+|++++...|-.-.|+.++-.+.
T Consensus 255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 255 NKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 34456667777777777777777765443
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=1e-05 Score=95.82 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=89.9
Q ss_pred cccEEEEeccCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccC-CCCcCccccceEEE
Q 042986 1226 ALKFLSIWHCSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFP-EGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p-~~~~~~~~L~~L~l 1304 (1485)
+|+.+.+.... ...-...+.++..|+.+.+..+ ....-...+..+..|+.+...... ++ ..+..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEE
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ecccccccccccccccc
Confidence 46777665431 2222345677888888887654 333344567778888887775541 33 33566778888888
Q ss_pred ccccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCC-CCCCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1305 GGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGM-FPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1305 ~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
.++ ++.++. .|.++++|+.+++.+ .+..+....+ ...+|+.+++..+ ++.+.. ..|.+|++|+.+++..+
T Consensus 305 ~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGA-NAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECT-TTBTTCTTCCEEEEEGG
T ss_pred ccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehH-HHhhCCCCCCEEEECCC
Confidence 652 555543 567788888888854 3555543322 3477888887654 455555 56888888888888764
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.28 E-value=3.5e-06 Score=96.82 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=109.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++.... ..+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccC--------
Confidence 45899999999998887432 2334889999999999999999874211 1111 122233222111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhh-cC
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQ--L-SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAI-MG 367 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~ 367 (1485)
..........+... + .+++.++|+|+++.........+...+.....+.++|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111111111111 1 25688999999976655555666666655456778888876543 2221 12
Q ss_pred CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 368 TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 368 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
....+++.+++.++..+++.+.+...+. ..+ .+....+++.++|.+-.+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC-CBC---HHHHHHHHHTTTTCHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2347999999999999998876643221 111 34567788899999875543
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.25 E-value=5.2e-06 Score=97.82 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=111.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+..++.... ....+.|+|+.|+||||+|+.+.+.......+.. ...........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 358999999999999996542 2346789999999999999999874322111100 0000000011111
Q ss_pred Hhh-------cCC-CCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hh
Q 042986 294 RSI-------TKQ-TIDNSDLNLLQEELKKQ-LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VA 363 (1485)
Q Consensus 294 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 363 (1485)
... ... .....+...+.+.+... ..+++.+||+||++......+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 000 01112233222222111 135678999999976654555556555544445667777775432 22
Q ss_pred hh-cCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 042986 364 AI-MGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTLG 424 (1485)
Q Consensus 364 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 424 (1485)
.. ......+++.+++.++..+++.+.+...+. ... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 21 123357899999999999998876532111 111 3456779999999998776544
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.17 E-value=2.5e-06 Score=99.32 Aligned_cols=82 Identities=21% Similarity=0.150 Sum_probs=46.5
Q ss_pred cccEEEEec-cCCcchHHhhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEE
Q 042986 1226 ALKFLSIWH-CSRLESIVERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVI 1304 (1485)
Q Consensus 1226 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l 1304 (1485)
+|++|+|++ |.+....+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|. +..+|........|+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEe
Confidence 366666664 54444444556666666666666666655555556666666666666663 3344443322223666666
Q ss_pred cccc
Q 042986 1305 GGCK 1308 (1485)
Q Consensus 1305 ~~c~ 1308 (1485)
.+|+
T Consensus 111 ~~N~ 114 (347)
T 2ifg_A 111 SGNP 114 (347)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 6643
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=3.5e-06 Score=88.64 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=37.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++||+++++++.+++... ....+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999998543 3356789999999999999999874
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.05 E-value=1.8e-07 Score=108.87 Aligned_cols=159 Identities=11% Similarity=-0.007 Sum_probs=93.9
Q ss_pred ccccEEEEeccCCcchHHhhc----c-cCCCccEEEeecCCCcccc-CcCCCCCCCcCEEEeeCCCCCcccCCCC-----
Q 042986 1225 QALKFLSIWHCSRLESIVERL----D-NNTSLEVIEIVSCENLKIL-PHGLHKLWRLQEIDIHGCENLVSFPEGG----- 1293 (1485)
Q Consensus 1225 ~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~L~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~~p~~~----- 1293 (1485)
++|++|++++|.........+ . ..++|++|+|++|.+...- ......+++|++|+|++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 458888888887655433332 2 2368888888888764422 2222345678888888885432111111
Q ss_pred cCccccceEEEccccCcc----ccccCCCCCCccCEEEeeCCCCCc----cccCCCCCCCCcceEEeCCCCCCccccc--
Q 042986 1294 LLSAKLKRLVIGGCKKLE----ALPLGMHHLTCLQHLTIGGVPSLL----CFTEDGMFPTNLHSLEIDGMKIWKSLTE-- 1363 (1485)
Q Consensus 1294 ~~~~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 1363 (1485)
...++|++|++++|..-. .++..+..+++|++|+|++|..-. .+......+++|++|++++|.+...-..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 134578888888875321 234445667788888888876321 1111112246788888888876321100
Q ss_pred cCcCCccccccceeeccccc
Q 042986 1364 SGGFHRLTSLRRLAISGCDE 1383 (1485)
Q Consensus 1364 ~~~~~~l~~L~~L~l~~n~~ 1383 (1485)
...+..+++|++|+|++|.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhCCCCCEEeccCCCC
Confidence 01244567888888888874
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.8e-05 Score=92.37 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=109.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|+++.++.+..++... ....+.++|+.|+||||+|+.+.+.......+. ....+..+....... .++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 45899999999999998543 222378999999999999999988532111111 122233333222222 2222
Q ss_pred HHhhcCCCC-CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhhc-CCc
Q 042986 293 LRSITKQTI-DNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAIM-GTV 369 (1485)
Q Consensus 293 l~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~ 369 (1485)
+........ ..... .....-.+++-+|++|++..........+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222111110 00000 00111124567999999976554444455544444445667777775432 21111 112
Q ss_pred CceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 370 PAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 370 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
..+.+.+++.++....+.+.+...+. ..+ .+..+.|++.++|.|-.+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 36899999999999988876533221 111 35677899999999876543
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=4.7e-06 Score=95.88 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=33.1
Q ss_pred cccEEEEeccCCcchHHhhc---ccCCCccEEEeecCCCccc----cCcCCCCCCCcCEEEeeCCC
Q 042986 1226 ALKFLSIWHCSRLESIVERL---DNNTSLEVIEIVSCENLKI----LPHGLHKLWRLQEIDIHGCE 1284 (1485)
Q Consensus 1226 ~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~ 1284 (1485)
+|+.|++++|......+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|+|++|.
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 47777777776654333222 2456666666666554431 33334455666666666653
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.96 E-value=5.6e-06 Score=90.69 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=95.5
Q ss_pred ceeec---hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 215 KVYGR---ETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 215 ~~vGr---~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
+++|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++.... ....+.|+.++.-.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHH------
Confidence 46663 34455555555322 3467889999999999999999984322 2234566665432110
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhh--Hhhccccccc-CCCC-cEEEEEccchh------
Q 042986 292 ILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYND--WVDMSCPFEA-GAPG-SKIIVTTRNRE------ 361 (1485)
Q Consensus 292 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~--~~~l~~~l~~-~~~g-s~iivTtr~~~------ 361 (1485)
+.+. + +.+ .++.+||+||++...... ...+...+.. ...+ .++|+||+...
T Consensus 95 ~~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 STAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp CGGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred HHHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0000 0 001 345689999996543222 2222222111 0112 25777776432
Q ss_pred ---hhhhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 362 ---VAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 362 ---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
+...+.....+++.+++.++..+++.+.+...+ ...+ .+....|++.++|.+-.+..+
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 111111125789999999999999988763221 1111 356677888999988665543
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.96 E-value=8.4e-05 Score=85.80 Aligned_cols=175 Identities=16% Similarity=0.127 Sum_probs=100.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+.+.. ...| +.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEM--SANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEecchhccc---------
Confidence 4689999999999888864311 12234567899999999999999998742 2222 2222221111
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC------------------CCCcEEEE
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG------------------APGSKIIV 355 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iiv 355 (1485)
.......+.. ..+..+|++|++..........+...+... .++.++|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 235678889998765433333332222111 11345666
Q ss_pred Eccchh-hhhhc-C-CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 356 TTRNRE-VAAIM-G-TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 356 Ttr~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
+|.... +...+ . ....+.+.+++.++...++.+.+-.... . --.+....|++.+.|.|-.+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-T---CEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-E---ECHHHHHHHHHTTTTCHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHCcCHHHHH
Confidence 665432 11111 1 1247899999999999998877632211 1 113566778889999985444
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00047 Score=81.39 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCCCCCcCEEEeeCCCCCcccCCCCcCccccceEEEccccCcccccc-CCCCCCccCEEEeeCCCCCccccCCCC-CCC
Q 042986 1268 GLHKLWRLQEIDIHGCENLVSFPEGGLLSAKLKRLVIGGCKKLEALPL-GMHHLTCLQHLTIGGVPSLLCFTEDGM-FPT 1345 (1485)
Q Consensus 1268 ~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~ 1345 (1485)
.|.++.+|+.+.+.++ ....-...+..+++|+.+.+.. .++.++. .|.++++|+.+.|.. .+..+....+ -..
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 4556666666666543 1221222345556666666643 3444433 455666666666653 2333433222 236
Q ss_pred CcceEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1346 NLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1346 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
+|+++.+..+ ++.+.. ..|.+|++|+.+++.++.
T Consensus 335 ~L~~i~ip~s--v~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS--VTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT--CCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc--cCEEhH-hHhhCCCCCCEEEECCce
Confidence 6677766543 444444 567888888888887753
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.90 E-value=8.9e-05 Score=87.78 Aligned_cols=177 Identities=20% Similarity=0.156 Sum_probs=98.7
Q ss_pred CceeechhHH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEK---RDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.++||.+..+ ..+...+... ....+.++|.+|+||||+|+.+.+.. ...| +.++.......-.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHHH
Confidence 4588988877 6777777543 34678899999999999999999843 2222 23322211111112
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEE-Eccchh--hh-hhc
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIV-TTRNRE--VA-AIM 366 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~-~~~ 366 (1485)
.++... ......+++.+|++|++..-.....+.+...+.. + ...+|. ||.+.. +. ...
T Consensus 93 ~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHh
Confidence 221111 1111246788999999976544444455444433 2 223333 555442 11 112
Q ss_pred CCcCceeCCCCChhhHHHHHHhcccCCCCC---CCChhHHHHHHHHHHHcCCChhHHH
Q 042986 367 GTVPAYQLKNLSIDDCLSVFAQHSLGTRDF---SSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 367 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
....++.+.+++.++...++.+.+...... ....--.+..+.|++.++|.+-.+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 233578899999999999888765331100 0011123566778888999875444
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=3.5e-07 Score=106.53 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=24.9
Q ss_pred cccccEEEecccCcccccc----cccc-CCCCcceEeeccCCC
Q 042986 1061 SCRLERLELRDCQDLVKLP----KSLL-SLSSLTEIRIHNCSS 1098 (1485)
Q Consensus 1061 ~~~L~~L~Ls~~~~~~~l~----~~l~-~l~~L~~L~L~~~~~ 1098 (1485)
+++|+.|+|++|.+..... ..+. ..++|++|+|++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l 113 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL 113 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC
Confidence 4678899999998764322 2233 236788888877743
No 176
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=0.0007 Score=79.87 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=60.1
Q ss_pred hcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCC-CcCccccceEEEccccCccccc-cCCCCCC
Q 042986 1244 RLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEG-GLLSAKLKRLVIGGCKKLEALP-LGMHHLT 1321 (1485)
Q Consensus 1244 ~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~-~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~ 1321 (1485)
.|.++..|+.+.+.++ ....-...|.++++|+.+.+.. .+..++.. |..+.+|+.+++.. .++.++ ..|.+++
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 4556666666665432 1222233455666666666643 24444433 45566666666654 244443 2455666
Q ss_pred ccCEEEeeCCCCCccccCC-CCCCCCcceEEeCCCCCCccccccCcCCccccccceeecccc
Q 042986 1322 CLQHLTIGGVPSLLCFTED-GMFPTNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1322 ~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
+|+.+.+.. .+..+... +.-.++|+.+++.++.... ..+..+.+|+.+.+..+.
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC---------
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCC
Confidence 677666643 23333322 1224667777766653211 125556677777776653
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=3.8e-05 Score=93.66 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=107.2
Q ss_pred CceeechhHHHHHHHHHhcCCC-----------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-----------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
.+++|++..++++.+|+..... .+.+..+.+.|+|++|+||||+|+.+++.. . + ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 4689999999999999964110 001234688999999999999999999843 1 1 1233444443
Q ss_pred cCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh---hHhhcccccccCCCCcEEEEEccc
Q 042986 283 FDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYN---DWVDMSCPFEAGAPGSKIIVTTRN 359 (1485)
Q Consensus 283 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~---~~~~l~~~l~~~~~gs~iivTtr~ 359 (1485)
.... .....+........-..-...... .....+++.+||+|+++..... .+..+...+.. .+..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 3322 222222222111100000000000 0012356899999999654221 12233322222 23345655544
Q ss_pred hh---hhhhcCCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC-ChhHHHHHHhH
Q 042986 360 RE---VAAIMGTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG-LPLAAKTLGGL 426 (1485)
Q Consensus 360 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~~ 426 (1485)
.. +.........+++.+++.++..+.+.+.+...+..-.+ +....|++.++| ++-|+..+..+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 32 22222223468999999999998887765432211111 345678888999 55566655443
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=1e-05 Score=93.04 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=60.8
Q ss_pred hhcccCCCccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCCCC--cCccccceEEEcccc-------Ccccc
Q 042986 1243 ERLDNNTSLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPEGG--LLSAKLKRLVIGGCK-------KLEAL 1313 (1485)
Q Consensus 1243 ~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~~~--~~~~~L~~L~l~~c~-------~l~~l 1313 (1485)
..+..+|+|+.|+|++|.... ++. + .+++|++|+|..|.........+ ..+++|+.|+|+.+. .+..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 344555666666666653222 222 2 25666666666553221110111 134566666664211 01111
Q ss_pred ccCC--CCCCccCEEEeeCCCCCccc----cCCCCCCCCcceEEeCCCCCCcc----ccccCcCCccccccceeecccc
Q 042986 1314 PLGM--HHLTCLQHLTIGGVPSLLCF----TEDGMFPTNLHSLEIDGMKIWKS----LTESGGFHRLTSLRRLAISGCD 1382 (1485)
Q Consensus 1314 ~~~~--~~l~~L~~L~l~~~~~l~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~n~ 1382 (1485)
...+ ..+++|+.|++.+|...... ... ...++|++|+|+.|..-.. +.. .+.++++|+.|++++|.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~--~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLD--HVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHT--THHHHTTCSEEECCSBB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHh--hcccCCcceEEECCCCc
Confidence 1111 24566777777665432211 111 1235677777765543221 111 23456677777777665
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.78 E-value=0.00017 Score=79.71 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=95.0
Q ss_pred CceeechhHHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLK---DDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+++.. ... .+....+-+.++|++|+|||++|+.+++.. ...| +.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVPF---LAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCCE---EEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEechHHHHh---
Confidence 4588999888777665421 110 011234567899999999999999999843 2222 2333322111
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC------------h---hhHhhccccccc--CCCC
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN------------Y---NDWVDMSCPFEA--GAPG 350 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 350 (1485)
.........+...+.......+.+|++|+++.-. . .....+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0001111222333333334567899999996531 0 111122221111 1234
Q ss_pred cEEEEEccchhhh-hhc-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 351 SKIIVTTRNREVA-AIM-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 351 s~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
..||.||...... ... . -...+.+...+.++-.+++...+..... ..........+++.+.|.+-
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCH
Confidence 5666677554321 111 1 1246788999999999998877532211 11112234678888888754
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.77 E-value=7.5e-05 Score=85.05 Aligned_cols=159 Identities=15% Similarity=0.086 Sum_probs=89.3
Q ss_pred ceeechhHHHHHHHHHhcCC---------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 215 KVYGRETEKRDIVELLLKDD---------LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
+++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47898888888876653210 001223456889999999999999988874432222222223443321
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhHhhcccccccCCCCcEEEEE
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE---------NYNDWVDMSCPFEAGAPGSKIIVT 356 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 356 (1485)
.+.... ...........+... +.-+|++|+++.- .......+...+.....+.+||.|
T Consensus 109 ---------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 111111 111122222333332 3459999999632 333334454444444556788888
Q ss_pred ccchhh----------hhhcCCcCceeCCCCChhhHHHHHHhccc
Q 042986 357 TRNREV----------AAIMGTVPAYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 357 tr~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
|..... ...+ ...+.+.+++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 865322 2221 25788999999999888877653
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.77 E-value=5.7e-05 Score=89.73 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC--eeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD--LKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
...+.|+|++|+||||||+.+++.. ...+. ..++++. ..+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 5678899999999999999999843 22232 2344432 23344444444321 11 22334444
Q ss_pred CCcEEEEEeCCCCCCh--hhHhhccccccc-CCCCcEEEEEccch---------hhhhhcCCcCceeCCCCChhhHHHHH
Q 042986 319 RKKFLLVLDDVWNENY--NDWVDMSCPFEA-GAPGSKIIVTTRNR---------EVAAIMGTVPAYQLKNLSIDDCLSVF 386 (1485)
Q Consensus 319 ~kr~LivlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 386 (1485)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4567999999965321 112223222211 13467888888762 22222333357899999999999999
Q ss_pred HhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 387 AQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.+.+...+- ..++ +....|++.++|.+-.+.
T Consensus 273 ~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHH
Confidence 887642211 1122 345678888999885443
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=0.00016 Score=81.17 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=98.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
-.+++|.++.++++.+.+...... +-....-+.|+|++|+|||++|+.+++.. ...| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehHHHH--
Confidence 356899999999998877431000 01234568899999999999999999843 2222 222221110
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-----------Ch---hhHhhcccccc--cCCC
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE-----------NY---NDWVDMSCPFE--AGAP 349 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~-----------~~---~~~~~l~~~l~--~~~~ 349 (1485)
... .......+...+......++.+|++||++.. .. .....+...+. ....
T Consensus 89 ------------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 0111122223333333456789999999431 00 11111111111 1223
Q ss_pred CcEEEEEccchhhhh-hc----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC-ChhHHH
Q 042986 350 GSKIIVTTRNREVAA-IM----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG-LPLAAK 421 (1485)
Q Consensus 350 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~ 421 (1485)
+..||.||....... .. .-...+.+...+.++..+++...+..... ..... ...+++.+.| .|-.|.
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 567777887543221 11 11236899999999999999887643221 11222 3456667777 443443
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1e-05 Score=80.79 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=39.5
Q ss_pred CccEEEeecCCCccccCcCCCCCCCcCEEEeeCCCCCcccCC-CCcC----ccccceEEEccccCccccc-cCCCCCCcc
Q 042986 1250 SLEVIEIVSCENLKILPHGLHKLWRLQEIDIHGCENLVSFPE-GGLL----SAKLKRLVIGGCKKLEALP-LGMHHLTCL 1323 (1485)
Q Consensus 1250 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~----~~~L~~L~l~~c~~l~~l~-~~~~~l~~L 1323 (1485)
.|+.||+++|.+...--..+.++++|++|+|++|..++.-.- .+.. +++|++|+|++|..++.-. ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 344444444443221112234555566666666654432110 0111 2356666666666554321 123345666
Q ss_pred CEEEeeCCCCCc
Q 042986 1324 QHLTIGGVPSLL 1335 (1485)
Q Consensus 1324 ~~L~l~~~~~l~ 1335 (1485)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666666554
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.74 E-value=0.0001 Score=86.40 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=100.8
Q ss_pred CceeechhHHHHH---HHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEc----CccCHH
Q 042986 214 AKVYGRETEKRDI---VELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVS----DDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l---~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~~~~~ 286 (1485)
.++||++..++.+ .+.+... ....+.+.|+|++|+|||++|+.+.+.......| +.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchh
Confidence 4699999887764 4444332 1223578899999999999999999854321111 112211 122333
Q ss_pred HHHHHHHHhhcCCC---------------------------C-C--CCCHHHHHHHHHHHh-----CCC----cEEEEEe
Q 042986 287 WLTTIILRSITKQT---------------------------I-D--NSDLNLLQEELKKQL-----SRK----KFLLVLD 327 (1485)
Q Consensus 287 ~~~~~il~~l~~~~---------------------------~-~--~~~~~~~~~~l~~~l-----~~k----r~LivlD 327 (1485)
+...+......+.. . . ..-.+.+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 33333333211100 0 0 000122222222211 133 3599999
Q ss_pred CCCCCChhhHhhcccccccCCCCcEEEEEccc-------------hhhh-hhcCCcCceeCCCCChhhHHHHHHhcccCC
Q 042986 328 DVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN-------------REVA-AIMGTVPAYQLKNLSIDDCLSVFAQHSLGT 393 (1485)
Q Consensus 328 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 393 (1485)
++..........+...+.... ...++++|.. ..+. ........+.+.+++.++..+++.+.+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 997655444444444443322 2234444431 1111 111222357999999999999998776432
Q ss_pred CCCCCChhHHHHHHHHHHHcC-CChhHHH
Q 042986 394 RDFSSNKSLEEIGRKIVIKCN-GLPLAAK 421 (1485)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~~c~-g~PLai~ 421 (1485)
.. ..+ .+....|++.+. |.|-.+.
T Consensus 276 ~~-~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 276 DV-EMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp TC-CBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred CC-CCC---HHHHHHHHHHhcCCCHHHHH
Confidence 21 111 355667888887 7765443
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=7.2e-05 Score=87.12 Aligned_cols=195 Identities=10% Similarity=0.099 Sum_probs=102.1
Q ss_pred CceeechhHHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc-c-ccc--ccCeeE-------------
Q 042986 214 AKVYGRETEKRDIVELL-LKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-Q-VQY--YFDLKA------------- 275 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~--~F~~~~------------- 275 (1485)
.+++|++..++.+..++ ... .... +.|+|+.|+||||+|+.+.+.. . ..+ .++...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45889999888887777 322 1223 8899999999999999887631 0 000 011000
Q ss_pred -----EEEEcCc-c--CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC
Q 042986 276 -----WTCVSDD-F--DVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG 347 (1485)
Q Consensus 276 -----wv~~s~~-~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~ 347 (1485)
++.+... . ......+++++.+..... .+... .+. .+..++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111100 0 000012222222211100 00000 000 02346679999999775544445555544433
Q ss_pred CCCcEEEEEccchh-hhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 348 APGSKIIVTTRNRE-VAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 348 ~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
..+.++|++|.... +...+ .....+++.+++.++..+.+.+.+...+-.-+. .+....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 45677888776532 22222 233579999999999999988765322111110 245667888899988655443
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.73 E-value=0.00021 Score=79.32 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=89.5
Q ss_pred ceeechhHHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 215 KVYGRETEKRDIVE-------LLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~-------~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.++|.....++++. .+... .......+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~--~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES--NFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH--TCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEeCHHH-----
Confidence 46777776666655 23211 12356788899999999999999999842 2221 22222211
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhH-hhcccccc---cCCCCcEEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE---------NYNDW-VDMSCPFE---AGAPGSKII 354 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~---------~~~~~-~~l~~~l~---~~~~gs~ii 354 (1485)
+.+. ........+...+......+..+|++||++.. ....+ ..+...+. .......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 00001122333344444567899999998431 01111 11222121 122334567
Q ss_pred EEccchhhhhh---cCC-cCceeCCCCCh-hhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC
Q 042986 355 VTTRNREVAAI---MGT-VPAYQLKNLSI-DDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG 415 (1485)
Q Consensus 355 vTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g 415 (1485)
.||........ .+. ...+.+.+++. ++...++.+.. .. . .+....|++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~--~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF--K---DKERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS--C---HHHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC--C---HHHHHHHHHHhcC
Confidence 77776644332 111 24588888988 66666665531 11 1 2446677888877
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.64 E-value=0.00044 Score=79.07 Aligned_cols=170 Identities=13% Similarity=0.069 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--------------------ccCeeEEEEE
Q 042986 220 ETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY--------------------YFDLKAWTCV 279 (1485)
Q Consensus 220 ~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 279 (1485)
++..+.+...+..+ .-...+.++|+.|+|||++|+.+.+...-.. |+| ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44566666666433 1245788999999999999998886431111 122 112211
Q ss_pred cCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEE
Q 042986 280 SDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQL-----SRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKII 354 (1485)
Q Consensus 280 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 354 (1485)
.. .......+++.+ +.+.+ .+++-++|+|+++.......+.+...+.....+..+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001122333322 22222 2467899999997765445555655555444567777
Q ss_pred EEccchh-hhhhc-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHHHH
Q 042986 355 VTTRNRE-VAAIM-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKTL 423 (1485)
Q Consensus 355 vTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 423 (1485)
++|.... +...+ .....+++.+++.++..+.+.+.+ . .+ .+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7766542 33222 234579999999999999988775 1 11 244567889999999766443
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=1.6e-05 Score=79.37 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=41.5
Q ss_pred ccceEEEccccCccccccCCCCCCccCEEEeeCCCCCccccCCCC-----CCCCcceEEeCCCCCCccccccCcCCcccc
Q 042986 1298 KLKRLVIGGCKKLEALPLGMHHLTCLQHLTIGGVPSLLCFTEDGM-----FPTNLHSLEIDGMKIWKSLTESGGFHRLTS 1372 (1485)
Q Consensus 1298 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 1372 (1485)
.|+.|++++|.....--..+.++++|++|+|++|..+++...... ..++|++|+|++|..+++-.- ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 455555555541111111334556666666666655543211100 012466666666666554322 22456677
Q ss_pred ccceeecccc
Q 042986 1373 LRRLAISGCD 1382 (1485)
Q Consensus 1373 L~~L~l~~n~ 1382 (1485)
|++|+|++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.58 E-value=0.0006 Score=77.63 Aligned_cols=187 Identities=16% Similarity=0.069 Sum_probs=100.5
Q ss_pred CceeechhHHHHHHHHHhcC---C---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKD---D---LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+.+... . .......+-|.++|++|+|||++|+.+++.. ...| +.++.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCCE---EEEchH------H
Confidence 46899999999998877310 0 0012234568899999999999999999842 2222 222221 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhccccc---ccCCCCcEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSCPF---EAGAPGSKI 353 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs~i 353 (1485)
+ ..... ......+...+...-..++.+|++|+++.-.. .....+...+ .....+..|
T Consensus 87 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 87 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp H----HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred H----hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 1 11110 01111222223333345678999999953210 0012222222 122345566
Q ss_pred EEEccchhhh-hhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC-hhHHHHHH
Q 042986 354 IVTTRNREVA-AIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL-PLAAKTLG 424 (1485)
Q Consensus 354 ivTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 424 (1485)
|.||...... ..+ .-...+.+...+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6677654321 111 12245778888999999999887643221111 23456788888874 44444433
No 190
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.54 E-value=0.00029 Score=80.69 Aligned_cols=177 Identities=14% Similarity=0.087 Sum_probs=98.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
.+++|++..++.+.+++.... ...++.+.|+.|+|||++|+.+.+... . ..+.++.+. ... ...+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~--~---~~~~i~~~~-~~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN--A---DMMFVNGSD-CKI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT--E---EEEEEETTT-CCH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC--C---CEEEEcccc-cCH-HHHHHHH
Confidence 468999999999999996432 235777888999999999999987431 1 123344332 121 1222222
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-hhhHhhcccccccCCCCcEEEEEccchh-hhhhc-CCcC
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-YNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAIM-GTVP 370 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 370 (1485)
....... ...+++-+||+||++.-. ......+...+.....+.++|+||.... +...+ ....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1111000 012367899999997654 3334444443333234567888876643 11111 1124
Q ss_pred ceeCCCCChhhHHHH-------HHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHH
Q 042986 371 AYQLKNLSIDDCLSV-------FAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAA 420 (1485)
Q Consensus 371 ~~~l~~L~~~~~~~l-------f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 420 (1485)
.+++.+++.++-.++ +.+.+...+ ...++ .+....|++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHHH
Confidence 689999998874332 222221111 11111 255667888888876543
No 191
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.54 E-value=0.011 Score=69.10 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=36.9
Q ss_pred cccccccEEEecccCccccccccccCCCCcceEeeccCCCccccCCCCCC-CCCCEEEEecCCCCCcCccccccCCCCCc
Q 042986 1059 GLSCRLERLELRDCQDLVKLPKSLLSLSSLTEIRIHNCSSLVSFPDAVLP-SQLRVISIWDCGALKFLPDAWMLDNNSSL 1137 (1485)
Q Consensus 1059 ~~~~~L~~L~Ls~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 1137 (1485)
....+|+.+.|.. .+...-..+|.+|.+|+.+.|..+ ++.+....+. .+|+.+.+.++ +..++... +.+ .+|
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~~--l~~I~~~a-F~~-~~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGMER--VKKFGDYV-FQG-TDL 115 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECTT--CCEECTTT-TTT-CCC
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCce--eeEeccce-ecc-CCc
Confidence 3344566666643 222222345667777777776543 4444443322 34555554322 23333222 222 256
Q ss_pred cEEEEec
Q 042986 1138 EILDIRH 1144 (1485)
Q Consensus 1138 ~~L~l~~ 1144 (1485)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6666643
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=0.0001 Score=72.64 Aligned_cols=114 Identities=13% Similarity=0.013 Sum_probs=67.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
+++|+...++++.+.+..-. ... .-|.|+|..|+|||++|+.+++.... ...| + +..+.-.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ETD-IAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TCC-SCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHh---CCC-CCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 57899999999988885431 112 23579999999999999999984321 2222 2 554432221
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
... ...+... +.-.|++|+++.-.......+...+.......+||.||...
T Consensus 66 ----------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111 1112211 23478999997766544455554444444456788877653
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.51 E-value=0.0023 Score=72.53 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=99.5
Q ss_pred CceeechhHHHHHHHHHhc---C-CC-C-CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLK---D-DL-R-NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~-~~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.++.++.+.+.+.. . +. . .....+-|.++|++|+|||++|+.+++... ...| +.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHH----
Confidence 4688999988888877631 0 00 0 112346788999999999999999998431 1111 222222211
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hhh----Hhhcccccc---cCCCCcEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-------YND----WVDMSCPFE---AGAPGSKI 353 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-------~~~----~~~l~~~l~---~~~~gs~i 353 (1485)
.. ........+...+...-..++.+|++|+++... ... ...+...+. ....+..|
T Consensus 84 ----------~~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SK-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CS-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hh-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00 111122223333333334578899999995420 000 111111111 11234455
Q ss_pred EEEccchhh-hhhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC-hhHHHHHH
Q 042986 354 IVTTRNREV-AAIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL-PLAAKTLG 424 (1485)
Q Consensus 354 ivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 424 (1485)
|.||..... ...+ .-...+.+...+.++-.+++..+.-.... ... ......|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 656654421 1111 22246788888888888888876532211 111 24456788889887 44455443
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.49 E-value=0.0012 Score=76.09 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=97.9
Q ss_pred CceeechhHHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKD----DL--RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+.+... .. ......+-|.++|++|+|||++|+.+++.. ...| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH------H
Confidence 46899999999998876311 00 011223457899999999999999999843 2222 222211 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh-----------hHhhcccccc---cCCCCcEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYN-----------DWVDMSCPFE---AGAPGSKI 353 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~i 353 (1485)
+ ..... ......+...+...-..++.+|++|+++..... ....+...+. ....+..|
T Consensus 120 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 11110 111222222333333457899999999642210 0112222111 12334556
Q ss_pred EEEccchh-hhhhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC-hhHHHHH
Q 042986 354 IVTTRNRE-VAAIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL-PLAAKTL 423 (1485)
Q Consensus 354 ivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~ 423 (1485)
|.||.... +...+ .-...+.+...+.++-.+++..++........ ......|++.+.|. +-.|..+
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 66666542 11111 22346788888999988888887643221111 23456688888884 4344443
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=0.00014 Score=75.05 Aligned_cols=122 Identities=17% Similarity=0.102 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK 298 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 298 (1485)
+...++.+.+++..-. ......+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555553321 1234688999999999999999999854312222 223333 34444444433322
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhh--ccccccc-CCCCcEEEEEccch
Q 042986 299 QTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVD--MSCPFEA-GAPGSKIIVTTRNR 360 (1485)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 360 (1485)
.... ...+.+ . +.-+|||||++......|.. +...+.. ...|..||+||...
T Consensus 89 ~~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 222222 2 34589999997433333432 2221211 12467888888654
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.015 Score=67.95 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=18.5
Q ss_pred CCcceEEeCCCCCCccccccCcCCccccccceeeccc
Q 042986 1345 TNLHSLEIDGMKIWKSLTESGGFHRLTSLRRLAISGC 1381 (1485)
Q Consensus 1345 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1381 (1485)
.+|+.+++..+ ++.+.. ..|.+|++|+.+.+..+
T Consensus 310 ~~L~~i~lp~~--l~~I~~-~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 310 VKLSSVTLPTA--LKTIQV-YAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEECCTT--CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred CCCCEEEcCcc--ccEEHH-HHhhCCCCCCEEEECCc
Confidence 45555555332 333333 45677777777777553
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00038 Score=80.14 Aligned_cols=174 Identities=13% Similarity=0.162 Sum_probs=99.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-eeEEEEEcCccCHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD-LKAWTCVSDDFDVIWLTTII 292 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 292 (1485)
.+++|.+..++.+..++..+ +.+.+.++|+.|+||||+|+.+.+...- ..+. ...-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCccccc--------
Confidence 34789988888888888543 2233889999999999999999874311 1111 011122221111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHH------hCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh-hhhh
Q 042986 293 LRSITKQTIDNSDLNLLQEELKKQ------LSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE-VAAI 365 (1485)
Q Consensus 293 l~~l~~~~~~~~~~~~~~~~l~~~------l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~ 365 (1485)
.+.+.+.+... +.+.+-++|+|++........+.+...+.......++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222211 123467899999966544444455444443345667777765432 2111
Q ss_pred c-CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 366 M-GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 366 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
+ .....+++.+++.++..+.+.+.+-..+ ..-. .+..+.|++.++|.+--
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEK-LKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCBC---HHHHHHHHHHHTTCHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHH
Confidence 1 2234688999999998887776542211 1111 34566788888887753
No 198
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=6e-05 Score=81.69 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=38.8
Q ss_pred cCCcccEEEecCCCCCCCC---CccCCCCcccEEeccCCcccccChhhhccc--cccEecccccc
Q 042986 624 KLQRLRVFSLRGYHNPELP---DSIGNLRNLRYLNLSGTNIKTLPESINKLY--NLHTFLLEGCW 683 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~~i~~lp---~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~--~L~~L~L~~~~ 683 (1485)
+++.|+.|+|++|.+..++ ..+..+++|++|+|++|+|+.+ ..+..+. +|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 5677777777777776543 4556677777777777777765 3344444 66666666664
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.44 E-value=9.8e-05 Score=76.80 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=37.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++||+.+++.+.+.+... ....+.|+|.+|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999543 2356689999999999999999874
No 200
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.40 E-value=0.0011 Score=76.66 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=98.6
Q ss_pred CceeechhHHHHHHHHHhc----CCC--CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLK----DDL--RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+.+.. .+. ......+.|.|+|+.|+|||++|+.+++.. ... .+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCe---EEEEehHHhhc---
Confidence 4589999999998887742 000 001234578899999999999999999743 222 23333332111
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHhhccccccc----CCCCcE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-----------YNDWVDMSCPFEA----GAPGSK 352 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 352 (1485)
.. .......+...+...-..++.+|+||+++... ......+...+.. ...+..
T Consensus 156 -----------~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 -----------KW-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -----------SS-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -----------cc-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 00 00011111222222223567899999993210 0011122222211 122445
Q ss_pred EEEEccchh-hhhhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCC-ChhHHHHHH
Q 042986 353 IIVTTRNRE-VAAIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNG-LPLAAKTLG 424 (1485)
Q Consensus 353 iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~ 424 (1485)
||.||.... +...+ .-...+.+...+.++..+++...+..... ... .+....|++.+.| .+-.|..+.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 565665432 21111 11235788888888888888776532211 111 3456678888888 455555544
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.33 E-value=0.00041 Score=79.32 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=83.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRK 320 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 320 (1485)
...+.|+|++|+||||||+.+++..... .+ ..++++. ..+...+...+... ..+. +.+.+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4568899999999999999999843221 11 2344433 23333444333211 1122 222222 3
Q ss_pred cEEEEEeCCCCCCh--hhHhhccccccc-CCCCcEEEEEccchh---------hhhhcCCcCceeCCCCChhhHHHHHHh
Q 042986 321 KFLLVLDDVWNENY--NDWVDMSCPFEA-GAPGSKIIVTTRNRE---------VAAIMGTVPAYQLKNLSIDDCLSVFAQ 388 (1485)
Q Consensus 321 r~LivlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 388 (1485)
.-+|++||+..... .....+...+.. ...|.+||+||.... +...+.....+++.+ +.++..+++.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999955321 111222222211 123567888776431 222222234689999 99999999888
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHcCCChh
Q 042986 389 HSLGTRDFSSNKSLEEIGRKIVIKCNGLPL 418 (1485)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL 418 (1485)
.+..... ..+ .+....|++.+ |..-
T Consensus 178 ~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 7642221 112 34566677778 6653
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.00026 Score=74.64 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC
Q 042986 221 TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT 300 (1485)
Q Consensus 221 ~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~ 300 (1485)
..++.+.+++..... ......+.|+|.+|+|||+||+.+++... .....++|++++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 344555566543311 11226788999999999999999998542 222345555443 334444333221
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhh--ccc-ccccC-CCCcEEEEEccc
Q 042986 301 IDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVD--MSC-PFEAG-APGSKIIVTTRN 359 (1485)
Q Consensus 301 ~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 359 (1485)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112233333322 2399999997654444432 221 11111 245678888874
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.25 E-value=0.0046 Score=69.56 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=96.0
Q ss_pred CceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+++..... ......+.+.|+|++|+||||+|+.+++.. ...| +.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEeeHHHHhh---
Confidence 4689999999999887733100 001124578899999999999999999843 2222 2233222110
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhccc---ccccC--CCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSC---PFEAG--APGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~---~l~~~--~~gs 351 (1485)
.. ...........+......++.+|++|++..... .....+.. .++.. +.+.
T Consensus 93 -----------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 011111222222333345678999999954210 00011111 11111 1244
Q ss_pred EEEEEccchh-hhhhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 042986 352 KIIVTTRNRE-VAAIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTL 423 (1485)
Q Consensus 352 ~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 423 (1485)
.||.||.... +...+ .-...+.+...+.++...++...+-.... ... .+....|++.+.|.+- ++..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 5666776542 11111 11235677777788877777765432211 111 2455678888988875 44444
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.00078 Score=75.23 Aligned_cols=148 Identities=8% Similarity=-0.039 Sum_probs=90.4
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc-cc-cccCeeEEEEEcC-ccCHHHHHHHHHH
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQ-YYFDLKAWTCVSD-DFDVIWLTTIILR 294 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~~s~-~~~~~~~~~~il~ 294 (1485)
|-++.++.+...+..+ +.+...++|+.|+||||+|+.+.+... .. .+.+ ..++..+. ...+.. .+++++
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 4455566777777433 257888999999999999999986311 11 1333 23443332 222222 233333
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccch-hhhhhcCCcCcee
Q 042986 295 SITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNR-EVAAIMGTVPAYQ 373 (1485)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 373 (1485)
.+.... ..+++-++|+|+++.-.....+.+...+....+.+++|++|.++ .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332111 12456789999997766566666766665555677777766443 454444444 899
Q ss_pred CCCCChhhHHHHHHhcc
Q 042986 374 LKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 374 l~~L~~~~~~~lf~~~a 390 (1485)
+.++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.19 E-value=0.003 Score=75.09 Aligned_cols=187 Identities=15% Similarity=0.126 Sum_probs=98.5
Q ss_pred CceeechhHHHHHHHHHhcC----CC-C-CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKD----DL-R-NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~----~~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++.+.+.+... .. . .....+-|.++|++|+|||+||+.+++... . ..++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHHH----
Confidence 46899999999988877310 00 0 112346788999999999999999998431 1 2233333321
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhccccccc---CCCCcEE
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSCPFEA---GAPGSKI 353 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~i 353 (1485)
+. ....+. .......+ +...-..++.+|++|+++.... .....+...+.. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 111010 11122222 2222235678999999964310 011122222221 2345566
Q ss_pred EEEccchhhh-hhc--CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC-hhHHHHH
Q 042986 354 IVTTRNREVA-AIM--GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL-PLAAKTL 423 (1485)
Q Consensus 354 ivTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~ 423 (1485)
|.||...... ..+ .....+.+...+.++-..+|..++........ ......|++.+.|. +-.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 7677654321 111 12235778888888888888877632211011 23456688888884 4444443
No 206
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.15 E-value=0.00025 Score=69.63 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=33.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-+++|++..++++.+.+..... .. .-|.|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~-~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RT-SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CS-SCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CC-CcEEEECCCCccHHHHHHHHHHh
Confidence 3578999998888888754211 12 23669999999999999999984
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.14 E-value=0.00026 Score=76.70 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=70.2
Q ss_pred EEecCCCCCCCCCcc----CCCCcccEEeccCCccccc---ChhhhccccccEeccccccccccccccccCcc--cccee
Q 042986 631 FSLRGYHNPELPDSI----GNLRNLRYLNLSGTNIKTL---PESINKLYNLHTFLLEGCWRLKKLCADMGNLI--KLHHL 701 (1485)
Q Consensus 631 L~L~~~~i~~lp~~i----~~L~~Lr~L~Ls~~~i~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L 701 (1485)
++++.|....++..+ .++++|++|+|++|+|+.+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 455555443333221 4688999999999999865 467789999999999999 56655 3466666 99999
Q ss_pred eccCCCCcccccc-------cccCcccccccCceE
Q 042986 702 KNSDTDSLEEMPL-------GIGKLTCLRTLCNFA 729 (1485)
Q Consensus 702 ~l~~~~~l~~~p~-------~i~~L~~L~~L~~~~ 729 (1485)
++++|.....+|. .+..+++|+.|+...
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 9999984444552 267788888885543
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.14 E-value=0.00065 Score=81.46 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=78.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---cc-Ce-eEEEEEcCccCHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY---YF-DL-KAWTCVSDDFDVIWL 288 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~-~~wv~~s~~~~~~~~ 288 (1485)
..+|||+.++++++..+.... ..-+.++|.+|+|||++|+.++....... .. +. .+.++.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------
Confidence 358999999999999996532 23456999999999999999987431110 00 11 11222220
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhc--
Q 042986 289 TTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIM-- 366 (1485)
Q Consensus 289 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-- 366 (1485)
...+. -... +...+...-..++.++++|. .......+...+.. ..-++|.+|.........
T Consensus 247 ------~~~g~--~e~~---~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ------KYRGE--FEDR---LKKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ------cccch--HHHH---HHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 00000 0111 22223333345678899991 11122223333321 134566666554321111
Q ss_pred -----CCcCceeCCCCChhhHHHHHHhcc
Q 042986 367 -----GTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 367 -----~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.....+.+.+.+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 122368999999999999998754
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.10 E-value=0.0035 Score=70.41 Aligned_cols=181 Identities=17% Similarity=0.108 Sum_probs=97.1
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.+++|.++.++++.+++...-. .+-...+.|.++|++|+|||++|+.+++.. ...| +.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~-----i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCEE-----EEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCCE-----EEEE----hH
Confidence 4589999988888877642100 011234578899999999999999999843 2222 2222 22
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--------------NDWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 350 (1485)
.+.... .+.. ...+...+.......+.+|++|+++.-.. .....+...+. ....+
T Consensus 84 ~l~~~~----~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW----FGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH----HTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh----cCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222222 1111 12233334444445679999999953100 00122222221 11235
Q ss_pred cEEEEEccchhhh-hh-cC---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhH
Q 042986 351 SKIIVTTRNREVA-AI-MG---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLA 419 (1485)
Q Consensus 351 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 419 (1485)
..||.||...... .. .. -...+.+...+.++-.+++..+.-... ......+. .+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchHH----HHHHHcCCCCHH
Confidence 5677777655322 21 12 123688999999888888877653221 11122233 455567776643
No 210
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.10 E-value=0.0035 Score=73.44 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=96.5
Q ss_pred CCceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
-.+++|.+..++.+.+++..... ......+-|.|+|..|+|||++|+.+++.. ...| +.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~~~---~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NATF---FNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TCEE---EEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cCcE---EEeeHHHhhcc-
Confidence 35689999999999888732100 001123578899999999999999998742 2222 22222221110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHhhcccccc---c-CCCCc
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN-----------YNDWVDMSCPFE---A-GAPGS 351 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs 351 (1485)
. .......+...+...-...+.+|+||+++... ......+...+. . .....
T Consensus 188 -------------~-~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 -------------Y-VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -------------c-cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00111222222333333456899999995320 000111111111 1 11234
Q ss_pred EEEEEccchh-hhhhc-CCc-CceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 042986 352 KIIVTTRNRE-VAAIM-GTV-PAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPL-AAKTL 423 (1485)
Q Consensus 352 ~iivTtr~~~-v~~~~-~~~-~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 423 (1485)
.||.||.... +...+ ... ..+.+...+.++..+++...+..... .. ..+....|++.+.|..- +|..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 5555665432 21111 122 35788889999998888876633221 11 13456678888888554 55444
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0047 Score=70.40 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=96.0
Q ss_pred CceeechhHHHHHHHHHhcC----CC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKD----DL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+.+.-. +. -+-...+-|-++|++|.|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 46889998888887765321 00 02233456789999999999999999984 33333 2333332111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------h--h----Hhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--------N--D----WVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--------~--~----~~~l~~~l~--~~~~g 350 (1485)
.........+.+.+...-...+++|++|+++.-.. . . ...+...+. ....+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00111122222333333345689999999964210 0 0 111222121 12234
Q ss_pred cEEEEEccchhhhh-hc----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAA-IM----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
-.||.||..++... .+ .-...+.+...+.++-.++|+.+.-+. .....-++ ..|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-NLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-BCCSSCCH----HHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHCCCCC
Confidence 45666776554321 11 233578898888888888887765322 11222233 44667787754
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.91 E-value=0.0022 Score=72.78 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=63.9
Q ss_pred ceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTI 291 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 291 (1485)
.++|.+..++.+...+..... ........+.++|..|+|||++|+.+++.... .-...+.+.++.-.+.. ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeecccccccc-cHHH
Confidence 467999998888888754311 01122457899999999999999999984311 11123444444322211 1112
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccc
Q 042986 292 ILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCP 343 (1485)
Q Consensus 292 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~ 343 (1485)
++.... ..........+...+.. ...-++++|++..........+...
T Consensus 95 l~g~~~-~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~ 142 (311)
T 4fcw_A 95 LIGAPP-GYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQM 142 (311)
T ss_dssp HHCCCT-TSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred hcCCCC-ccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHH
Confidence 211110 00011111223222222 3357999999977654444444433
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.0051 Score=79.27 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=84.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEE-EEcCccCHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWT-CVSDDFDVIWL 288 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv-~~s~~~~~~~~ 288 (1485)
..++||+.+++++++.|... ...-+.++|.+|+||||+|+.+.+...... .....+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 45899999999999999543 224567999999999999999987431111 11222221 1110 0
Q ss_pred HHHHHHhhcCCCCCCCCHHH-HHHHHHHHhCCCcEEEEEeCCCCC--------ChhhHhhcccccccCCCCcEEEEEccc
Q 042986 289 TTIILRSITKQTIDNSDLNL-LQEELKKQLSRKKFLLVLDDVWNE--------NYNDWVDMSCPFEAGAPGSKIIVTTRN 359 (1485)
Q Consensus 289 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LivlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~ 359 (1485)
+.+.. .....+. +...+...-..++.+|++|++... ...+...+...+... .+-++|.+|..
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 00011 1122232 223333333446799999999643 122222222222222 24566666655
Q ss_pred hhhhhhc-------CCcCceeCCCCChhhHHHHHHhc
Q 042986 360 REVAAIM-------GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 360 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
....... .....+.+...+.++..+++...
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 4322111 11125888999998888877654
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.84 E-value=0.00026 Score=73.06 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=55.4
Q ss_pred cCCcccEEEecCC-CCCC-----CCCccCCCCcccEEeccCCcccc-----cChhhhccccccEecccccccccc-----
Q 042986 624 KLQRLRVFSLRGY-HNPE-----LPDSIGNLRNLRYLNLSGTNIKT-----LPESINKLYNLHTFLLEGCWRLKK----- 687 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~-~i~~-----lp~~i~~L~~Lr~L~Ls~~~i~~-----lP~~i~~L~~L~~L~L~~~~~l~~----- 687 (1485)
..+.|+.|+|++| .+.. +...+....+|++|+|++|.|.. +...+...+.|++|+|++|. +..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 5677788888877 6643 34455666778888888887752 44556666778888888773 332
Q ss_pred ccccccCccccceeec--cCCC
Q 042986 688 LCADMGNLIKLHHLKN--SDTD 707 (1485)
Q Consensus 688 lp~~i~~L~~L~~L~l--~~~~ 707 (1485)
+...+...+.|++|++ ++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 4455666777888888 6565
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.83 E-value=0.0026 Score=82.80 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=78.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---ccc-C-eeEEEEEcCccCHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---YYF-D-LKAWTCVSDDFDVIWL 288 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~-~~~wv~~s~~~~~~~~ 288 (1485)
..++||+++++++++.+.... ..-+.++|.+|+||||+|+.+.+..... ... + ..+++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996542 2346789999999999999998743111 011 1 122332211100
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCCCCh-----hhHhh--cccccccCCCCcEEEEEccch
Q 042986 289 TTIILRSITKQTIDNSDLNLLQEELKKQLS-RKKFLLVLDDVWNENY-----NDWVD--MSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 289 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LivlDdv~~~~~-----~~~~~--l~~~l~~~~~gs~iivTtr~~ 360 (1485)
+........+.+...+...-. +++.+|++|++..-.. ..++. +..++...+ +-++|.+|...
T Consensus 240 ---------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~-~i~~I~at~~~ 309 (854)
T 1qvr_A 240 ---------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG-ELRLIGATTLD 309 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT-CCCEEEEECHH
T ss_pred ---------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC-CeEEEEecCch
Confidence 000001111122222333323 4689999999954310 00111 111111122 33455555443
Q ss_pred hhh-----hhc-CCcCceeCCCCChhhHHHHHHhc
Q 042986 361 EVA-----AIM-GTVPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 361 ~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
... ..+ .....+.+.+++.++..+++...
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 221 111 12245899999999998888643
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.79 E-value=0.0027 Score=75.92 Aligned_cols=185 Identities=12% Similarity=0.118 Sum_probs=99.3
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.+++|.+..++++.+++..... .+.....-|.|+|.+|+|||++|+.+.+.. ...| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCCE---EEEEch------
Confidence 4589999999998887743100 001233568899999999999999998743 2222 223211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC--------Ch---hhHhhccccccc--CCCCcEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE--------NY---NDWVDMSCPFEA--GAPGSKI 353 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~--------~~---~~~~~l~~~l~~--~~~gs~i 353 (1485)
++...+ .......+...+.....+++.+|+||+++.- .. .....+...+.. ...+.+|
T Consensus 273 ----~l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111111 1111223334445555567889999999311 10 011122222221 1234466
Q ss_pred EEEccchh-hhhhcC----CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCC-hhHHHHH
Q 042986 354 IVTTRNRE-VAAIMG----TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGL-PLAAKTL 423 (1485)
Q Consensus 354 ivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~ 423 (1485)
|.||.... +...+. -...+.+...+.++-.+++..++-... ......+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHHH
Confidence 66766542 222221 123588999999999999988763221 1112223 4466667774 4444433
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.75 E-value=0.00032 Score=72.39 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=28.4
Q ss_pred cccEEEEecc-CCcc----hHHhhcccCCCccEEEeecCCCcc----ccCcCCCCCCCcCEEEeeCCC
Q 042986 1226 ALKFLSIWHC-SRLE----SIVERLDNNTSLEVIEIVSCENLK----ILPHGLHKLWRLQEIDIHGCE 1284 (1485)
Q Consensus 1226 ~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~ 1284 (1485)
+|++|+|++| .... .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3666666665 3332 223344455556666666655432 122233334455555555553
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.74 E-value=0.0021 Score=82.62 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=79.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---ccc-CeeEEEEEcCccCHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---YYF-DLKAWTCVSDDFDVIWLT 289 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~~s~~~~~~~~~ 289 (1485)
..+|||+++++++...+.... ..-+.++|.+|+|||++|+.+.+..... ... +..+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------
Confidence 358999999999999996542 2336799999999999999998743110 000 1111 11111
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhhhhc---
Q 042986 290 TIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVAAIM--- 366 (1485)
Q Consensus 290 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--- 366 (1485)
+. .....-...+...+...-..++.+|++|.- . .....+...+. ...-++|.||.........
T Consensus 245 -------g~-~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -------GT-KYRGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -------cc-cccchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 00 000000112223333344467889999921 1 11122333332 2235666666554421111
Q ss_pred ----CCcCceeCCCCChhhHHHHHHhcc
Q 042986 367 ----GTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 367 ----~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.....+.+...+.++..+++...+
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.74 E-value=0.0055 Score=73.25 Aligned_cols=95 Identities=8% Similarity=0.041 Sum_probs=55.3
Q ss_pred EEEEeCCCCCChhhHhhcccccccCCCCcEEEEEc----------c----chhhh-hhcCCcCceeCCCCChhhHHHHHH
Q 042986 323 LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTT----------R----NREVA-AIMGTVPAYQLKNLSIDDCLSVFA 387 (1485)
Q Consensus 323 LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 387 (1485)
++++|++..-....++.+...+...... .+|+.| . ...+. ........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999776656666666555443333 344343 2 11111 111223357999999999999998
Q ss_pred hcccCCCCCCCChhHHHHHHHHHHHc-CCChhHHHH
Q 042986 388 QHSLGTRDFSSNKSLEEIGRKIVIKC-NGLPLAAKT 422 (1485)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~~~~i~~~c-~g~PLai~~ 422 (1485)
+.+-..+. .-+ .+....|++.+ +|.|-.+..
T Consensus 377 ~~~~~~~~-~~~---~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGI-NIS---EEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTC-CBC---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCC-CCC---HHHHHHHHHHccCCCHHHHHH
Confidence 76521111 111 34556677777 787764443
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0074 Score=70.06 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred CceeechhHHHHHHHHHhcC---CC----CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLKD---DL----RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+.+.-. .. -+-...+-|.++|++|.|||++|+++++.. ...| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehhhhcc--
Confidence 46889998888887766321 00 022345678899999999999999999843 3232 2333322111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh----------h----hHhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY----------N----DWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~----------~----~~~~l~~~l~--~~~~g 350 (1485)
.........+...+...-...+++|++|+++.... . ....++..+. ....+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 00111112222233333345789999999964210 0 0112222221 12234
Q ss_pred cEEEEEccchhhhhh-c-CC---cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAAI-M-GT---VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~~-~-~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
..||.||..++.... + .. ...+.+...+.++-.++|+.+.-+.. .....++ ..+++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhCCCCC
Confidence 567777766543221 1 11 23578887788877788877653321 1112223 44667787754
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00059 Score=67.15 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
-..+.|+|..|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999854
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0036 Score=72.53 Aligned_cols=52 Identities=27% Similarity=0.203 Sum_probs=38.0
Q ss_pred CCceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.++.|.++.+++|.+.+.-.-. .+-...+-|.++|++|.|||++|+++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999998888776632100 02234566889999999999999999984
No 223
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.64 E-value=0.002 Score=71.02 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=33.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|++..+.++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3478999999888877754211 1235679999999999999999974
No 224
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.63 E-value=0.002 Score=72.23 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=36.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|+...+.++.+.+..-. . ...-|.|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a---~-~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA---P-SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC---S-TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh---C-CCCcEEEECCCCchHHHHHHHHHHh
Confidence 358899999999888875532 1 1234669999999999999999974
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.60 E-value=0.0073 Score=68.44 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=36.9
Q ss_pred CceeechhHHHHHHHHHhcC--CC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKD--DL------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~--~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|++..++.+...+... .. .......-+.++|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998877541 00 00012345779999999999999999874
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.57 E-value=0.013 Score=66.87 Aligned_cols=175 Identities=16% Similarity=0.141 Sum_probs=91.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIIL 293 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 293 (1485)
..++|.+..++.+...+..... .+.....+.++|+.|+||||||+.+.+... ..| .. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~----~~-~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNI----HV-TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCE----EE-EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE----EE-EechHh---------
Confidence 3578888877777666643210 112346789999999999999999998432 111 11 111100
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhcccccccC--------C----------CCcEEE-
Q 042986 294 RSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEAG--------A----------PGSKII- 354 (1485)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~ii- 354 (1485)
....++... ...+. ++-++++|++..-.....+.+...+... + +.-.++
T Consensus 88 ----------~~~~~l~~~-~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 88 ----------VKQGDMAAI-LTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------CSHHHHHHH-HHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------cCHHHHHHH-HHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 011111111 11222 3446778887544322222221111100 0 011222
Q ss_pred EEccchhhhhhcC--CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCChhHHH
Q 042986 355 VTTRNREVAAIMG--TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLPLAAK 421 (1485)
Q Consensus 355 vTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 421 (1485)
.|++...+...+. ......+++.+.++-.+++.+.+-.... . --.+.+..|++.++|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHH
Confidence 3444433322221 1124789999999999999887532111 1 124567889999999996443
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0077 Score=69.55 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=94.7
Q ss_pred CceeechhHHHHHHHHHhc---C-CC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLK---D-DL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~-~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+.+.- . +. -+-...+-|.++|++|.|||+||+++++.. ...| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~--~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT--DATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CCCe---EEEEhHHhh---
Confidence 4688999888888776421 0 00 022345678899999999999999999843 3333 233322211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------h------hHhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--------N------DWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--------~------~~~~l~~~l~--~~~~g 350 (1485)
.. ........+...+...-...+++|++|+++.... . ....++..+. ....+
T Consensus 281 -----------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 281 -----------QK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -----------CC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -----------cc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00 0111112222333333346789999999964210 0 0111111111 11223
Q ss_pred cEEEEEccchhhhh-hc-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAA-IM-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
-.||.||...+... .+ . -...+.+...+.++-.++|+.+.-+.. ....-++ ..|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCCC
Confidence 34566776543321 11 1 234688888888888888877653221 1122233 34667787753
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.0078 Score=65.91 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=80.0
Q ss_pred CceeechhHHHHHHHHHh---cCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLL---KDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.+..++++.+.+. ....- +....+-+.|+|+.|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH---
Confidence 468899888777665542 11100 01123347899999999999999999743 2222 2222111000
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------h----hhHhhcccccc--cCCCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNEN----------Y----NDWVDMSCPFE--AGAPGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~----------~----~~~~~l~~~l~--~~~~gs 351 (1485)
.........+...+.......+.++++|+++.-. . .....+...+. ....+.
T Consensus 84 ------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0011222333444444445667899999983210 0 00111111111 112345
Q ss_pred EEEEEccchh-hhhhc-C---CcCceeCCCCChhhHHHHHHhcc
Q 042986 352 KIIVTTRNRE-VAAIM-G---TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 352 ~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
.||.||.... +.... . -...+.+...+.++-.+++..++
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 6677776543 21211 1 12356777777777777776654
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0055 Score=71.09 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=92.5
Q ss_pred CceeechhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLK----DDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+.+.. .+. .+-...+-|-++|++|.|||.+|+++++.. ...| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CCCE---EEEehhhhh---
Confidence 4688999998888776432 100 022345678899999999999999999843 3333 233322211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC------Ch----hh----Hhhccccccc--CCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNE------NY----ND----WVDMSCPFEA--GAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~------~~----~~----~~~l~~~l~~--~~~g 350 (1485)
.. ........+...+...-...+++|++|+++.- .. .. ...+...+.. ...+
T Consensus 253 -----------~~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 253 -----------QM-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -----------SS-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -----------hc-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 00 00111111222222222346899999998421 00 01 1112222221 1223
Q ss_pred cEEEEEccchhhhhh-c-C---CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAAI-M-G---TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
-.||.||..++.... + . -...+.+...+.++-.++|+.+.-+.. ....-++ ..|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 456667766543221 1 1 124688888888887888876542211 1112223 34666777753
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.43 E-value=0.0014 Score=72.42 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=34.5
Q ss_pred CceeechhHHHHHHHHHhcCCC-C-----CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDL-R-----NDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|.+..++.+.+.+..-.. . +....+-+.++|++|+|||++|+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4588998888877776531000 0 0011223679999999999999999984
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.40 E-value=0.013 Score=69.19 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=94.0
Q ss_pred CceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.++.++++.+.+..-.. -+....+-|.++|++|+|||+||+.+.+.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH--
Confidence 4689999887777665432100 011122347799999999999999999843 2222 22332221110
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhcccccc--cCCCCc
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--------------NDWVDMSCPFE--AGAPGS 351 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs 351 (1485)
. ...........+.+.....+.+|++|+++.-.. .....+...+. ....+-
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 001112233344445556789999999954210 01122222221 112355
Q ss_pred EEEEEccchhhhh-h-cCC---cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 352 KIIVTTRNREVAA-I-MGT---VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 352 ~iivTtr~~~v~~-~-~~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
.||.||...+... . ... ...+.+...+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777664322 1 121 23678888888777777776653221 111112 233777888876
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.34 E-value=0.0032 Score=80.89 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=82.6
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHH
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+.+.. ...-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc-----
Confidence 46899999999888888643210 11223468899999999999999998743 111122344444332110
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhccccccc-----------CCCCcEEEEEccc
Q 042986 291 IILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENYNDWVDMSCPFEA-----------GAPGSKIIVTTRN 359 (1485)
Q Consensus 291 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtr~ 359 (1485)
.. .....+...+++ ...-+|+||++..........+...+.. .....+||.||..
T Consensus 564 ---------~~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HS--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CC--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------cc--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 001112222222 2334899999977665444444443322 1235688888873
Q ss_pred hh---------hhhhc-----CC-cCceeCCCCChhhHHHHHHhc
Q 042986 360 RE---------VAAIM-----GT-VPAYQLKNLSIDDCLSVFAQH 389 (1485)
Q Consensus 360 ~~---------v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 389 (1485)
.. +...+ .. ...+.+.+++.++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 11111 11 135677777777766665543
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.011 Score=67.53 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred CceeechhHHHHHHHHHhc---CCC----CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLK---DDL----RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+.+.- ... .+-...+-|-++|++|.|||.||+++++.. ...| +.+..++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhh---
Confidence 4678999888888776532 100 022345678899999999999999999843 3333 223322210
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhcccccc--cCCCC
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY--------------NDWVDMSCPFE--AGAPG 350 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 350 (1485)
.. ........+...+...-...+++|++|+++.... .....++..+. ....+
T Consensus 254 -----------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 -----------QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -----------CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -----------hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 00 0111111222223333345689999999853210 00111221111 12234
Q ss_pred cEEEEEccchhhhhh-c-CC---cCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 351 SKIIVTTRNREVAAI-M-GT---VPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 351 s~iivTtr~~~v~~~-~-~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
-.||.||...+.... + .. ...+.+...+.++-.++|..+.-+. .....-++ ..|++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCCC
Confidence 456667766543322 1 11 2357788778888788887765322 11222233 34666777753
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.15 E-value=0.0094 Score=72.65 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=36.9
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+++|.++-++.+.+.+.-..........++.++|++|+||||||+.+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568898888777765543211111124568999999999999999999974
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.15 E-value=0.0033 Score=68.91 Aligned_cols=69 Identities=19% Similarity=0.381 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEE--cCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCV--SDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
.+++.|+|++|+||||||.++... .-..+.|+++ .+..+. ...+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 367789999999999999999874 1123566776 332111 01345666666666666
Q ss_pred CCcEEEEEeCCCC
Q 042986 319 RKKFLLVLDDVWN 331 (1485)
Q Consensus 319 ~kr~LivlDdv~~ 331 (1485)
+.+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 666 999999943
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.09 E-value=0.0032 Score=70.66 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+....+.+.+++.... ......+.++|..|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3344455556664431 1123578899999999999999999853
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.83 E-value=0.025 Score=64.49 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=80.4
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
.++|+++.++.+...+... .-+.++|.+|+|||++|+.+.+.. ...| ..+..+......++ ..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~--~~~~---~~i~~~~~~~~~~l----~g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTM--DLDF---HRIQFTPDLLPSDL----IG 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHT--TCCE---EEEECCTTCCHHHH----HE
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHh--CCCe---EEEecCCCCChhhc----CC
Confidence 4789999999888888653 257799999999999999998732 2222 22333322222222 11
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCCCChhhHhhccccccc-----------CCCCcEEEEEccch
Q 042986 295 SITKQTIDNSDLNLLQEELKKQLSR---KKFLLVLDDVWNENYNDWVDMSCPFEA-----------GAPGSKIIVTTRNR 360 (1485)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LivlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtr~~ 360 (1485)
......... .. .... ...++++|++..........+...+.. ......|+.|+...
T Consensus 91 ~~~~~~~~~-~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQHKG-NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETTTT-EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCCCC-ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 111000000 00 0000 125899999976554333333222211 12234555555522
Q ss_pred h------hhhh-cCCcC-ceeCCCCChhhHHHHHHhccc
Q 042986 361 E------VAAI-MGTVP-AYQLKNLSIDDCLSVFAQHSL 391 (1485)
Q Consensus 361 ~------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~a~ 391 (1485)
. +... ..... .+.+...+.++-.+++.+++.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 1111 11112 488999999999998887753
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.70 E-value=0.059 Score=67.59 Aligned_cols=179 Identities=12% Similarity=0.157 Sum_probs=96.8
Q ss_pred CceeechhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLK----DDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.++.|.++.+++|.+++.- .+. -+-...+-|.++|++|.|||+||+.+++.. ..+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH-----
Confidence 4578888888887776531 110 022345678899999999999999999843 3333 3333211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh------hh-----Hhhccccccc--CCCCcEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY------ND-----WVDMSCPFEA--GAPGSKI 353 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~------~~-----~~~l~~~l~~--~~~gs~i 353 (1485)
+.. .........+...+....+..+.+|++|+++.-.. .+ ..++...+.. ...+-.|
T Consensus 274 -----l~s-----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHS-----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhc-----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111 11112223344455555567799999999954210 00 1112111111 1123345
Q ss_pred EEEccchh-hhhhcC----CcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 354 IVTTRNRE-VAAIMG----TVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 354 ivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
|.||...+ +-..+. -...+++...+.++-.++|..+.-+.. .....++ .+|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhcCCCC
Confidence 55665543 222221 124688888888888888887653221 1122233 34667787764
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.59 E-value=0.042 Score=58.27 Aligned_cols=84 Identities=21% Similarity=0.093 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcC-----------CC-CCCCCHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITK-----------QT-IDNSDLNL 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~-----------~~-~~~~~~~~ 308 (1485)
-.++.|+|.+|+||||||..+.. . .-..++|+.....++..++.+ +.+..+. .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999987 1 123577887766556555443 3332211 11 11112233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC
Q 042986 309 LQEELKKQLSRKKFLLVLDDVW 330 (1485)
Q Consensus 309 ~~~~l~~~l~~kr~LivlDdv~ 330 (1485)
....++.....+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444555554456788889873
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.44 E-value=0.017 Score=74.26 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=37.5
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4588999999888877753211 01123457889999999999999999874
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.19 E-value=0.029 Score=72.91 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=38.1
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|.+..++.+...+..... ..+.....+.|+|..|+|||++|+.+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999988888754311 01123457889999999999999999874
No 242
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.18 E-value=0.023 Score=54.10 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=42.0
Q ss_pred cEEEecCCCCC--CCCCccCCCCcccEEeccCCcccccC-hhhhccccccEecccccc
Q 042986 629 RVFSLRGYHNP--ELPDSIGNLRNLRYLNLSGTNIKTLP-ESINKLYNLHTFLLEGCW 683 (1485)
Q Consensus 629 r~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~ 683 (1485)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+| ..|..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46788888888 8887654 36889999999999887 456778888888888874
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.81 E-value=0.086 Score=57.30 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=32.9
Q ss_pred CceeechhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+++|.+..+.++.+....-... +-.-.+-+.|+|..|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889887666655443211000 00011228899999999999999999843
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.59 E-value=0.22 Score=59.11 Aligned_cols=175 Identities=11% Similarity=0.126 Sum_probs=89.9
Q ss_pred CceeechhHHHHHHHHHhc---CCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHH
Q 042986 214 AKVYGRETEKRDIVELLLK---DDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~---~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 287 (1485)
.+++|.++.++++.+.... ...- +-.-.+-+.|+|+.|+||||||+.++.... .. .+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~---~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CC---EEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEehhHHHH---
Confidence 4688998877766655421 1000 001122388999999999999999998432 11 23333221000
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC----CcEEEEEeCCCCCC----------hhhH----hhcccccccC--
Q 042986 288 LTTIILRSITKQTIDNSDLNLLQEELKKQLSR----KKFLLVLDDVWNEN----------YNDW----VDMSCPFEAG-- 347 (1485)
Q Consensus 288 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LivlDdv~~~~----------~~~~----~~l~~~l~~~-- 347 (1485)
.-.......++..++. ...++++|+++... ...+ ..+...+..+
T Consensus 103 ----------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 ----------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ----------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ----------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0001122233333332 34799999994321 1111 1222222221
Q ss_pred CCCcEEEEEccchhhhhh-c----CCcCceeCCCCChhhHHHHHHhcccCCCCCCCChhHHHHHHHHHHHcCCCh
Q 042986 348 APGSKIIVTTRNREVAAI-M----GTVPAYQLKNLSIDDCLSVFAQHSLGTRDFSSNKSLEEIGRKIVIKCNGLP 417 (1485)
Q Consensus 348 ~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 417 (1485)
..+..|+.||..+++... . .-...+.+...+.++-.+++..++-+. ....... ...|+..+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 223456667766654321 1 122468888888888888887765321 1111111 234666777765
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.58 E-value=0.068 Score=62.09 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+.++|++|+|||++|+.+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999974
No 246
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.53 E-value=0.054 Score=60.19 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999843
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.45 E-value=0.037 Score=57.63 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=34.5
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|++.++.+.+.+... ......+|+|+|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3566778888888654 2234689999999999999999999863
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.42 E-value=0.073 Score=60.11 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEELK 314 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 314 (1485)
.-+++.|+|.+|+||||||.++...... .=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999874322 11346788877777654 333333221 12345666666666
Q ss_pred HHhC-CCcEEEEEeCCCC
Q 042986 315 KQLS-RKKFLLVLDDVWN 331 (1485)
Q Consensus 315 ~~l~-~kr~LivlDdv~~ 331 (1485)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4455888999843
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.36 E-value=0.021 Score=59.92 Aligned_cols=113 Identities=10% Similarity=-0.134 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHHhC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI--DNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 318 (1485)
-.++.|+|..|.||||++..+...... +-..++.+..... .. ....++..++.... .....+++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 478899999999999999888774322 2222333332221 11 11233444432211 12334455555655555
Q ss_pred CCcE-EEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchh
Q 042986 319 RKKF-LLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNRE 361 (1485)
Q Consensus 319 ~kr~-LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 361 (1485)
+.++ +||+|.+..-..+..+.+ ..+.+ .|-.||+|.+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 4545 999999854322222222 22222 2778999988643
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.27 E-value=0.11 Score=56.67 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=54.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-----CCCCHHHH-HHHHHHH
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-----DNSDLNLL-QEELKKQ 316 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~~~ 316 (1485)
++-|.|.+|+||||||.++......+..-..++||+..+.++... +++++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 789999999999999988776332111124678999888887642 555554321 23456665 3333332
Q ss_pred --h-CCCcEEEEEeCCCC
Q 042986 317 --L-SRKKFLLVLDDVWN 331 (1485)
Q Consensus 317 --l-~~kr~LivlDdv~~ 331 (1485)
+ ..+.-+||+|-|..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 35678999999843
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.20 E-value=0.15 Score=55.78 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=75.4
Q ss_pred ceeechhHHHHHHHHHhcCC--------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 215 KVYGRETEKRDIVELLLKDD--------LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~--------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
++.|.++.++++.+.+...- ..-..... +.++|+.|.||||||+.+...... ..+++....-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 46677776666655432100 00011112 899999999999999999984322 1233332211100
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhcccccccC--CCCcEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY-----------NDWVDMSCPFEAG--APGSKI 353 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~i 353 (1485)
........+...++..-...+.++++|+++.... .....+...+..+ ....-+
T Consensus 84 --------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 84 --------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp --------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred --------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 0000001111122222234578999999954210 0011111112111 123345
Q ss_pred EEEccchhhhhhc-----CCcCceeCCCCChhhHHHHHHhcc
Q 042986 354 IVTTRNREVAAIM-----GTVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 354 ivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
+.+|..+++.... .-...+.+...+.++-.++|....
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5677666543221 122457788888888888887654
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.12 E-value=0.18 Score=57.27 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=37.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLTT 290 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~ 290 (1485)
.-.++.|+|.+|+||||||..+........ .-..++|++....++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 457999999999999999998886422211 224688998888888776654
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.05 E-value=0.11 Score=59.32 Aligned_cols=83 Identities=20% Similarity=0.140 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEELKK 315 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~~ 315 (1485)
-.++.|.|.+|+||||||..+...... .-..++|++....++... .+.++... ....+.+++...+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458889999999999999888764321 223688999888777542 33333221 123456677667766
Q ss_pred HhCC-CcEEEEEeCCC
Q 042986 316 QLSR-KKFLLVLDDVW 330 (1485)
Q Consensus 316 ~l~~-kr~LivlDdv~ 330 (1485)
..+. +.-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 6543 34589999983
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.04 E-value=0.1 Score=66.73 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=82.6
Q ss_pred CceeechhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHH
Q 042986 214 AKVYGRETEKRDIVELLLK----DDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVI 286 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 286 (1485)
.+++|.+..++++.+++.. .+. -.-.....|.|+|.+|+||||||+.+.... ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l--~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT--TCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCcE---EEEEchH-----
Confidence 5689999999988888743 000 011234568899999999999999998742 2222 2232111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh------hh-----Hhhccccccc--CCCCcEE
Q 042986 287 WLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWNENY------ND-----WVDMSCPFEA--GAPGSKI 353 (1485)
Q Consensus 287 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~~~~------~~-----~~~l~~~l~~--~~~gs~i 353 (1485)
+.... .......+...++........++++|++..... .+ ...+...+.. ...+-.|
T Consensus 274 ---------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 10000 011112222333333344678999999943210 00 1111111111 1223456
Q ss_pred EEEccchh-hhhhcCC----cCceeCCCCChhhHHHHHHhcc
Q 042986 354 IVTTRNRE-VAAIMGT----VPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 354 ivTtr~~~-v~~~~~~----~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
|.||.... +...+.. ...+.+...+.++-.+++..++
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66665542 2221111 1346778888888888887765
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.95 E-value=0.1 Score=57.78 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC-ccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD-DFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS 318 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 318 (1485)
...+++++|.+|+||||++..+......... ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3469999999999999999988864332111 1233343221 1223333333333332222122334445444443 3
Q ss_pred CCcEEEEEeCC
Q 042986 319 RKKFLLVLDDV 329 (1485)
Q Consensus 319 ~kr~LivlDdv 329 (1485)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888843
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.95 E-value=0.094 Score=56.56 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWL 288 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~ 288 (1485)
-.++.|+|.+|+||||||+.+........ .-..++|+.....++..++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 46999999999999999999887321111 1246788877765555444
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.84 E-value=0.077 Score=60.25 Aligned_cols=84 Identities=20% Similarity=0.093 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEELK 314 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 314 (1485)
.-+++.|.|.+|+||||||..+...... .-..++|++....++... ++.++... ....+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999888864322 223578998888777542 33333221 12234555555554
Q ss_pred HHhC-CCcEEEEEeCCC
Q 042986 315 KQLS-RKKFLLVLDDVW 330 (1485)
Q Consensus 315 ~~l~-~kr~LivlDdv~ 330 (1485)
+..+ .+.-+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 344589999883
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.59 E-value=0.098 Score=59.06 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=38.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc----ccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQY----YFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
-.++.|+|.+|+||||||..+........ .-..++|++....++..++.+. ++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHh
Confidence 46899999999999999998886432111 0246789988888877766543 4444
No 259
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.55 E-value=0.19 Score=55.80 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=32.7
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 217 YGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 217 vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
+|....+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555555555555442 234678999999999999999999876
No 260
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.40 E-value=0.11 Score=57.40 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=32.7
Q ss_pred CceeechhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+++|.++.++++.+....-... +-.-.+-+.|+|+.|+||||||+.+....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 46788877666655443211000 00011228899999999999999999843
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.20 E-value=0.13 Score=58.19 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc---------cc-----CeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQY---------YF-----DLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
.-.++.|+|.+|+||||+|.++........ .. ..++|++....++..++.+. ++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHc
Confidence 457999999999999999988876421110 11 36789988888877766643 3444
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.19 E-value=0.32 Score=53.50 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=43.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCeeEEEEEcCccCHHHHHHHHHHh------hcC-CCCCCCCHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQY-YFDLKAWTCVSDDFDVIWLTTIILRS------ITK-QTIDNSDLNLLQ 310 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~il~~------l~~-~~~~~~~~~~~~ 310 (1485)
....+|+|+|..|+||||||+.+.......+ ....+..|+...-+-.......+... +.. ...+..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4578999999999999999998887433211 11223333433322222333333222 111 123455666676
Q ss_pred HHHHHHhCC
Q 042986 311 EELKKQLSR 319 (1485)
Q Consensus 311 ~~l~~~l~~ 319 (1485)
+.+.+.-.+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665444
No 263
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.19 E-value=0.16 Score=57.70 Aligned_cols=85 Identities=20% Similarity=0.119 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCC-----CCCCCHHHHHHHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQT-----IDNSDLNLLQEELK 314 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 314 (1485)
.-+++.|+|.+|+||||||.++..... ..=..++|++....++... .+.++... ....+.++....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~~-----a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPEY-----AKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHHH-----HHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999998886432 1223578888887776532 33333221 12345666666555
Q ss_pred HHhCC-CcEEEEEeCCCC
Q 042986 315 KQLSR-KKFLLVLDDVWN 331 (1485)
Q Consensus 315 ~~l~~-kr~LivlDdv~~ 331 (1485)
..... +.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 55543 456899999843
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.11 E-value=0.39 Score=54.81 Aligned_cols=156 Identities=11% Similarity=-0.062 Sum_probs=94.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKK-QLSR 319 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~ 319 (1485)
.++..++|..|.||++.|+.+.+... ...|+....+.+... .+.+++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCcc
Confidence 46888999999999999988877432 123332111222222 233333333322 2345
Q ss_pred CcEEEEEeCCCC-CChhhHhhcccccccCCCCcEEEEEccc-------hhhhhhcC-CcCceeCCCCChhhHHHHHHhcc
Q 042986 320 KKFLLVLDDVWN-ENYNDWVDMSCPFEAGAPGSKIIVTTRN-------REVAAIMG-TVPAYQLKNLSIDDCLSVFAQHS 390 (1485)
Q Consensus 320 kr~LivlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a 390 (1485)
++-++|+|++.. .....++.+...+..-.+++.+|++|.. ..+...+. ....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999865 4435566666655544557777776643 23444432 34578899999999887777765
Q ss_pred cCCCCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 042986 391 LGTRDFSSNKSLEEIGRKIVIKCNGLPLAAKT 422 (1485)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 422 (1485)
-..+- .. -.+.+..+++.++|...++..
T Consensus 156 ~~~g~-~i---~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNL-EL---DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTC-EE---CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCC-CC---CHHHHHHHHHHhchHHHHHHH
Confidence 32221 11 135677888999998877654
No 265
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.74 E-value=0.05 Score=55.04 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHhCCCcE-EEEEeCCCCC---ChhhHhhcccccccCCCCcEEEEEccch
Q 042986 311 EELKKQLSRKKF-LLVLDDVWNE---NYNDWVDMSCPFEAGAPGSKIIVTTRNR 360 (1485)
Q Consensus 311 ~~l~~~l~~kr~-LivlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 360 (1485)
...++.+.+.+| |||||++-.. .....+++...+........||+|+|..
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 345556655544 9999998221 1122333444444445567899999986
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.73 E-value=0.34 Score=56.61 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...++|.|+|.+|+||||+|..+....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998888643
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.52 E-value=0.088 Score=55.14 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 222 EKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.++|.+.+... .....+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 234689999999999999999999874
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.35 E-value=0.13 Score=57.46 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=51.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEEEEEcCccCHHHHHHHHHHhhcC----C
Q 042986 225 DIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAWTCVSDDFDVIWLTTIILRSITK----Q 299 (1485)
Q Consensus 225 ~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~il~~l~~----~ 299 (1485)
++++.+..- ..-+.++|+|..|.|||||++.+.+..... ..++ ++++-+++...- ..++.+.+.. .
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~E---v~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEE---VTEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHH---HHHHHTTCSSEEEEE
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHH---HHHHHHHhCeEEEEe
Confidence 445555433 234689999999999999999988743211 1233 345677765422 1223333321 1
Q ss_pred CCCCCCHHH---------HHHHHHHHhCCCcEEEEEeCC
Q 042986 300 TIDNSDLNL---------LQEELKKQLSRKKFLLVLDDV 329 (1485)
Q Consensus 300 ~~~~~~~~~---------~~~~l~~~l~~kr~LivlDdv 329 (1485)
..+...... ..+.+++ +++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCc
Confidence 111111111 1122332 589999999999
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.09 E-value=0.099 Score=62.26 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 215 KVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.++|++..++.+...+..+ .-|.++|.+|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 3789999998888877654 357799999999999999999854
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.02 E-value=0.068 Score=54.35 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.99 E-value=0.074 Score=53.99 Aligned_cols=20 Identities=50% Similarity=0.755 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLV 261 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v 261 (1485)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.94 E-value=0.14 Score=56.47 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 222 EKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
..++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444444322 334567899999999999999999986
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.91 E-value=0.24 Score=57.48 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIIL 293 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il 293 (1485)
+.++|+|..|+|||||++.+......+ +-+..+++-+++.. ...++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468899999999999999998753322 22455667777654 3444444443
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.86 E-value=0.094 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999874
No 275
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.72 E-value=0.44 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++.|+|..|+|||||++.+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.65 E-value=0.079 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.60 E-value=0.085 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.38 E-value=0.1 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5889999999999999999986
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.32 E-value=0.39 Score=54.57 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=32.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccc----CeeEEEEEcCccCHHH
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYF----DLKAWTCVSDDFDVIW 287 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~ 287 (1485)
.-.++.|+|..|+|||||+..+.......... ..++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45899999999999999999988643111111 2348887766554443
No 280
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.24 E-value=0.2 Score=55.94 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=32.5
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 217 YGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 217 vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
|+.+.-.+++++.+...- ..+....|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344555666666664321 2234567899999999999999998874
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.22 E-value=0.094 Score=53.36 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.16 E-value=0.12 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..+|+|+|+.|.||||+|+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998743
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.94 E-value=0.76 Score=51.40 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRS 295 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 295 (1485)
.-.++.|.|.+|+||||+|..+......++ ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346889999999999999988876433222 456776654 4566666666654
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.91 E-value=0.5 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...++.|+|.+|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45899999999999999999988743
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.83 E-value=0.17 Score=54.78 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 221 TEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 221 ~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+.+...+..... ......+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334445445544332 3345688999999999999999999873
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.82 E-value=0.11 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+.|.|+|+.|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999873
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.76 E-value=0.099 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 288
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.70 E-value=0.13 Score=55.74 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999873
No 289
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.64 E-value=0.75 Score=53.49 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=40.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRS 295 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~ 295 (1485)
+-+.++|.|..|+|||+|++++.+... +.+-+.++++-+++.. .+.++.+++.+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 346789999999999999999987431 2345778888888865 455666666653
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.58 E-value=0.14 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47999999999999999997654
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.49 E-value=0.86 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...||.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888753
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.47 E-value=0.17 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999999863
No 293
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.47 E-value=0.19 Score=47.61 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=44.1
Q ss_pred cEEeccCCccc--ccChhhhccccccEecccccccccccccc-ccCccccceeeccCCC
Q 042986 652 RYLNLSGTNIK--TLPESINKLYNLHTFLLEGCWRLKKLCAD-MGNLIKLHHLKNSDTD 707 (1485)
Q Consensus 652 r~L~Ls~~~i~--~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 707 (1485)
.+++.+++.++ .+|..+. .+|++|+|++| .+..+|.+ +..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47889999998 8987543 46999999999 67888766 6789999999999886
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.44 E-value=0.55 Score=54.06 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc----ccccCeeEEEEEcCccCHHHHHHHHHHhhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQV----QYYFDLKAWTCVSDDFDVIWLTTIILRSIT 297 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 297 (1485)
.-.++.|+|..|+|||||+..++-.... ...-..++|++....++..++. .+.+.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3469999999999999999976521111 1122457888877766655543 3444443
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.44 E-value=0.16 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.37 E-value=0.13 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.35 E-value=0.1 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999986
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.33 E-value=0.13 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999863
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.27 E-value=0.14 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 300
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.20 E-value=0.081 Score=53.84 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=27.6
Q ss_pred cccEEEEecc-CCcc----hHHhhcccCCCccEEEeecCCCcc----ccCcCCCCCCCcCEEEeeCCC
Q 042986 1226 ALKFLSIWHC-SRLE----SIVERLDNNTSLEVIEIVSCENLK----ILPHGLHKLWRLQEIDIHGCE 1284 (1485)
Q Consensus 1226 ~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~ 1284 (1485)
+|++|+|++| .+-. .+.+.+..-+.|+.|+|++|.+.. .+...+..=+.|++|+|++|.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3666666654 2221 223444455556666666555432 112222233455555555553
No 301
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.15 E-value=0.58 Score=52.37 Aligned_cols=52 Identities=17% Similarity=-0.006 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
-.++.|.|.+|+||||+|..+...... +=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358889999999999999988875432 1124556544 446677777776554
No 302
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.13 E-value=0.17 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999874
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.09 E-value=0.12 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|+|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 304
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.03 E-value=0.17 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+..+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5679999999999999999999873
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.98 E-value=0.15 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 306
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.98 E-value=0.22 Score=57.40 Aligned_cols=50 Identities=32% Similarity=0.321 Sum_probs=35.7
Q ss_pred ceeechhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 215 KVYGRETEKRDIVELLLKD-------D--LRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 215 ~~vGr~~~~~~l~~~l~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689998888888777210 0 001113356789999999999999999984
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.96 E-value=0.17 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 308
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.94 E-value=0.13 Score=57.56 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCeeEEEEEcCc
Q 042986 225 DIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-YYFDLKAWTCVSDD 282 (1485)
Q Consensus 225 ~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~ 282 (1485)
++++.+..- .+-+.++|+|..|+|||+|++++.+..... ..+. ++++-+++.
T Consensus 164 raID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 556666443 234678999999999999999988743221 1222 345666664
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.93 E-value=0.15 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998743
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.91 E-value=0.13 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|.|+|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999863
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.84 E-value=0.16 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999864
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.84 E-value=0.17 Score=53.06 Aligned_cols=25 Identities=44% Similarity=0.325 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|..|.|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999873
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.75 E-value=0.14 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|.|+|+.|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468899999999999999999874
No 314
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.75 E-value=0.42 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..+++++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998888643
No 315
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.73 E-value=0.18 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
++.+||+|.|-|||||||.|..+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3569999999999999999876664
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.68 E-value=0.17 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.65 E-value=0.16 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 318
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.63 E-value=1 Score=52.13 Aligned_cols=26 Identities=31% Similarity=0.203 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998888644
No 319
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.55 E-value=0.18 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.54 E-value=0.2 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
No 321
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.52 E-value=0.03 Score=57.18 Aligned_cols=23 Identities=26% Similarity=0.013 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++.|+|..|+||||++..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999666653
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.48 E-value=0.17 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.43 E-value=0.14 Score=51.82 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|.|+|+.|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999873
No 324
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.40 E-value=1.4 Score=51.09 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHHHHHh
Q 042986 225 DIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTIILRS 295 (1485)
Q Consensus 225 ~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~ 295 (1485)
+.++.|..- .+-+.++|+|..|+|||+|++++.+... +.+-+.++++-+++.. .+.++.+++.+.
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 345556432 2346889999999999999999987431 2344667888888764 455666666554
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.38 E-value=0.17 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999986
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.38 E-value=0.19 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.38 E-value=0.19 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.37 E-value=0.98 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..++.|+|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999888643
No 329
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.36 E-value=0.23 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.32 E-value=0.18 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.30 E-value=0.19 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998863
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.29 E-value=0.23 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+|.|+|+.|+||||+|+.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.29 E-value=0.15 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 334
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.24 E-value=1.3 Score=55.60 Aligned_cols=99 Identities=21% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCH
Q 042986 213 EAKVYGRETEKRDIVELLLKDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDV 285 (1485)
Q Consensus 213 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 285 (1485)
-.++.|.++.++++.+.+.-.-.. +-...+-|.++|++|.|||.+|+++.+.. ...| +.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f-----~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEE-----EECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCce-----EEecc----
Confidence 345778888888877765422100 11234457799999999999999999843 2222 22221
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 042986 286 IWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKKFLLVLDDVWN 331 (1485)
Q Consensus 286 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LivlDdv~~ 331 (1485)
. +++... .......+.+.+...-+..+++|++|+++.
T Consensus 545 ~----~l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 P----ELLTMW-----FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp H----HHHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred c----hhhccc-----cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 122111 122334444555555566789999999853
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.20 E-value=0.21 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.09 E-value=0.19 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.98 E-value=0.19 Score=53.43 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.97 E-value=0.15 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|+|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.94 E-value=0.2 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.561 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 340
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.90 E-value=0.17 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.85 E-value=0.24 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999999873
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.85 E-value=0.22 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.81 E-value=0.22 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|.+.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.76 E-value=0.24 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+||.|.|++|+||+|.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.69 E-value=1.2 Score=52.09 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD 284 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 284 (1485)
....+++|+|..|+|||||++.+....+.. ...+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 346799999999999999999998743221 2345554444444
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.68 E-value=0.27 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 347
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.52 E-value=0.26 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++++|..|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999999874
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.52 E-value=0.18 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.51 E-value=0.24 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|+|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.47 E-value=0.22 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999994
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.41 E-value=0.23 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 352
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.39 E-value=0.26 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.29 E-value=0.26 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998743
No 354
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.19 E-value=0.35 Score=51.00 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=29.6
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 218 GRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 218 Gr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555555555322 4689999999999999999998874
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.11 E-value=0.26 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+++|+|.+|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3469999999999999999999864
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.10 E-value=0.24 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 357
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.08 E-value=0.29 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|..|.|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998763
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.01 E-value=1.9 Score=51.17 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888853
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.99 E-value=1.1 Score=50.02 Aligned_cols=26 Identities=35% Similarity=0.282 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+++|+|..|+||||+++.+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999988743
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.90 E-value=0.25 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|.|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999873
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.81 E-value=0.26 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.68 E-value=0.18 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=17.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.60 E-value=0.32 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999983
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.59 E-value=0.27 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
..+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999996
No 365
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.56 E-value=1.2 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
..+++|+|.+|+||||++..++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998743
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.56 E-value=0.44 Score=51.06 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|.|.|+.|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
No 367
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.45 E-value=2.2 Score=61.05 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=44.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
+-|-++|++|.|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+.......... ..-.-.+|+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 456689999999999997776532 122 2345666666666655555444332110000000 000003678
Q ss_pred EEEEEeCCCC
Q 042986 322 FLLVLDDVWN 331 (1485)
Q Consensus 322 ~LivlDdv~~ 331 (1485)
.++.+||+.-
T Consensus 1338 ~VlFiDEinm 1347 (2695)
T 4akg_A 1338 LVLFCDEINL 1347 (2695)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccccc
Confidence 8999999743
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.44 E-value=0.24 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 369
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.34 E-value=0.78 Score=54.59 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 219 RETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 219 r~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
....++.+...+... . ..+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~------~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEK------K-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSS------S-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------C-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344455555555432 1 388899999999999998888754
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.16 E-value=0.3 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.15 E-value=0.29 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.15 E-value=0.29 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 373
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.12 E-value=0.19 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
++++|+|..|.|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998743
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.10 E-value=0.31 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.08 E-value=0.74 Score=56.12 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=54.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC---
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLS--- 318 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~--- 318 (1485)
+++.|.|.+|.||||++..+.......+ ..+.+......-. +.+.+.++.. ..+...+.......+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa----~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAA----RRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHH----HHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHH----HHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 5888999999999999998886433221 2344443322112 2222222111 1111111000000000
Q ss_pred ---CCcEEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccc
Q 042986 319 ---RKKFLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRN 359 (1485)
Q Consensus 319 ---~kr~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 359 (1485)
.+-=+||+|.+...+...+..+...++ .|.++|+.--.
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 022489999997766666666666554 46777776533
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.04 E-value=0.64 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+|+|+|..|.|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.99 E-value=0.35 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.96 E-value=0.28 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..+|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999863
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.77 E-value=0.48 Score=54.97 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=36.0
Q ss_pred CceeechhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 214 AKVYGRETEKRDIVELLLKD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45789998888887666321 0001112355889999999999999999874
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.72 E-value=0.38 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 381
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.71 E-value=0.26 Score=56.53 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.+++|.+..++.+........ ..-+.|+|..|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999886666544443221 1237899999999999999999743
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.65 E-value=0.33 Score=50.12 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.62 E-value=0.26 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|+|+.|.||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 384
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.53 E-value=0.17 Score=57.42 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTIDNSDLNLLQEELKKQLSRKK 321 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 321 (1485)
.+++|+|+.|.||||+.+.+....... ....+ +.+.++.... .... .....+.....+.....+.+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 599999999999999999887632111 11111 2222221110 0000 0000000000111234457888888888
Q ss_pred EEEEEeCCCCCChhhHhhcccccccCCCCcEEEEEccchhhh
Q 042986 322 FLLVLDDVWNENYNDWVDMSCPFEAGAPGSKIIVTTRNREVA 363 (1485)
Q Consensus 322 ~LivlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 363 (1485)
=+|++|.+.+. +.+..+... ...|.-|++||.....+
T Consensus 198 dvillDEp~d~--e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDL--ETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSH--HHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCH--HHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 89999999643 344433322 13466788888776554
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.44 E-value=0.29 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.44 E-value=0.19 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|+|+|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 387
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.44 E-value=0.34 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998874
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.44 E-value=0.36 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|+|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999873
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.43 E-value=0.34 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 390
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.43 E-value=0.31 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
+++|+|..|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998744
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.39 E-value=0.4 Score=53.11 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+++|+|..|+||||+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999874
No 392
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.36 E-value=0.78 Score=52.77 Aligned_cols=86 Identities=13% Similarity=0.257 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccC----eeEEEEEcCcc-CHHHHHHHHHHh--hcCC-----CCCCCCHHHH
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDKQVQYYFD----LKAWTCVSDDF-DVIWLTTIILRS--ITKQ-----TIDNSDLNLL 309 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~il~~--l~~~-----~~~~~~~~~~ 309 (1485)
+.++|.|..|+|||+|+.++.+.... +-+ .++++-+++.. .+.++.+++.+. +... ..+.......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999885433 223 56777777654 455555555442 1110 1111111111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCC
Q 042986 310 -----QEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 310 -----~~~l~~~l---~~kr~LivlDdv 329 (1485)
.-.+.+++ +++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12234444 378999999999
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.08 E-value=0.36 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.05 E-value=0.36 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.02 E-value=0.86 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
....+++|+|.+|+||||++..+....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999888643
No 396
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.98 E-value=0.58 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999874
No 397
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.70 E-value=0.39 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999973
No 398
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.68 E-value=0.49 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
No 399
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.59 E-value=0.43 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999976
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.49 E-value=0.34 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 401
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=85.47 E-value=1.4 Score=51.76 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccC-HHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFD-VIWLTTII 292 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 292 (1485)
-+.++|.|..|+|||+|++++.+. .+-+.++++-+++... +.++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 467899999999999999998763 2335678888888754 44554443
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.42 E-value=0.42 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+|+|.|+.|.||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 403
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=85.30 E-value=0.81 Score=52.23 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++.+.+... .....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555332 235689999999999999999888753
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.28 E-value=0.42 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.27 E-value=0.43 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999873
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.16 E-value=0.43 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.13 E-value=0.49 Score=58.49 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=36.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 214 AKVYGRETEKRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 214 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.++||.+..++.+...+... ..+.|+|..|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899998888887777433 478899999999999999998743
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.99 E-value=0.46 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.96 E-value=0.3 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh-c
Q 042986 242 SVIPIIGMGGLGKTTLAQLVY-N 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~-~ 263 (1485)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.93 E-value=0.51 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|.|+|+.|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999873
No 411
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.87 E-value=0.45 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998883
No 412
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=84.86 E-value=0.51 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...++.++|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999853
No 413
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.73 E-value=0.62 Score=47.30 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 223 KRDIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+..+..++..- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555321 22346899999999999999888874
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.73 E-value=0.52 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...+++|+|..|+||||+++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999999874
No 415
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.65 E-value=0.45 Score=48.41 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999874
No 416
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.62 E-value=0.59 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.50 E-value=0.48 Score=50.05 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 418
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.43 E-value=0.48 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.39 E-value=0.49 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.38 E-value=0.48 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 421
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.29 E-value=0.49 Score=51.44 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999986
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.27 E-value=0.41 Score=48.66 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=56.0
Q ss_pred cCCcccEEEecCC-CCCC-----CCCccCCCCcccEEeccCCccc-----ccChhhhccccccEeccccccccc-----c
Q 042986 624 KLQRLRVFSLRGY-HNPE-----LPDSIGNLRNLRYLNLSGTNIK-----TLPESINKLYNLHTFLLEGCWRLK-----K 687 (1485)
Q Consensus 624 ~l~~Lr~L~L~~~-~i~~-----lp~~i~~L~~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~l~-----~ 687 (1485)
+-..|+.|+|+++ .|.. +-+.+..=..|+.|+|++|.|. .|-+.+..-+.|++|+|++|. +. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 4567888999875 6643 3344556678999999999886 345666677889999998883 32 2
Q ss_pred ccccccCccccceeeccCC
Q 042986 688 LCADMGNLIKLHHLKNSDT 706 (1485)
Q Consensus 688 lp~~i~~L~~L~~L~l~~~ 706 (1485)
+-+.+..-+.|++|+++++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2333455566888888754
No 423
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.20 E-value=0.62 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..++|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999873
No 424
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=84.12 E-value=0.96 Score=52.02 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc--------cccC-eeEEEEEcCcc-CHHHHHHHHHHh--hcC-----CCCCC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------YYFD-LKAWTCVSDDF-DVIWLTTIILRS--ITK-----QTIDN 303 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~il~~--l~~-----~~~~~ 303 (1485)
-+.++|.|..|+|||+|+.++.+..... ++=+ .++++-+++.. .+.++.+++.+. +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3567899999999999999998854431 1112 56677777654 445555554432 110 01111
Q ss_pred CCHHHH-----HHHHHHHh---CCCcEEEEEeCC
Q 042986 304 SDLNLL-----QEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 304 ~~~~~~-----~~~l~~~l---~~kr~LivlDdv 329 (1485)
...... .-.+.+++ +++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112211 12234444 378999999998
No 425
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.12 E-value=0.4 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 426
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=84.04 E-value=1.7 Score=51.24 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCcc-CHHHHHHH
Q 042986 225 DIVELLLKDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDF-DVIWLTTI 291 (1485)
Q Consensus 225 ~l~~~l~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~ 291 (1485)
+.++.|..- .+-+.++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.++.++
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 345666432 234688999999999999999998742 33567888888763 34444444
No 427
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.03 E-value=0.6 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 428
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.00 E-value=0.59 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.074 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|+|.|..|.||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999999873
No 429
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.98 E-value=0.55 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999873
No 430
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.98 E-value=2.1 Score=50.61 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILR 294 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 294 (1485)
-.++.|.|.+|+||||||..+........ -..++|++... +..++...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHH
Confidence 46899999999999999999887543221 12466665443 44566665543
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.98 E-value=0.52 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|+.|.|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.85 E-value=0.54 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|.|.|+.|+||||+|+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999874
No 433
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.84 E-value=2.7 Score=49.31 Aligned_cols=51 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRS 295 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 295 (1485)
-.++.|.|.+|+||||+|..+......++ ..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHHH
Confidence 46888999999999999988887543321 2456655443 445555555543
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.82 E-value=0.55 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+|.|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999873
No 435
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.82 E-value=1.8 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 436
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.81 E-value=0.46 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999999874
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.67 E-value=0.55 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999974
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=83.65 E-value=0.54 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999973
No 439
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=83.62 E-value=1.4 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
.|+|=|.-|+||||.++.+++..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 367889999999999999998543
No 440
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.60 E-value=0.55 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 68999999999999999999873
No 441
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=83.56 E-value=1.3 Score=51.54 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccccccC-eeEEEEEcCcc-CHHHHHHHHHHhhcC-------CCCCCCCHHHH-
Q 042986 241 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFD-LKAWTCVSDDF-DVIWLTTIILRSITK-------QTIDNSDLNLL- 309 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~~- 309 (1485)
-+.++|+|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.=.. ...+.......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999996 5777632 245 35777788764 355555555542110 01111111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 ----QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 ----~~~l~~~l--~~kr~LivlDdv 329 (1485)
.-.+.+++ +++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11223333 578999999998
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.46 E-value=0.59 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999874
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.45 E-value=0.56 Score=50.62 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 444
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.41 E-value=0.59 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999973
No 445
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.38 E-value=0.57 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.38 E-value=0.57 Score=50.13 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 447
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=83.24 E-value=1.3 Score=51.55 Aligned_cols=85 Identities=21% Similarity=0.193 Sum_probs=49.5
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccccccC-eeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHHH-
Q 042986 241 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFD-LKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNLL- 309 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~~- 309 (1485)
-+.++|+|..|+|||+|| ..+.+.. +-+ .++++-+++.. .+.++.+.+.+.=... ..+.......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 457889999999999996 5777632 245 35777788764 3455555555421110 1111111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCC
Q 042986 310 ----QEELKKQL--SRKKFLLVLDDV 329 (1485)
Q Consensus 310 ----~~~l~~~l--~~kr~LivlDdv 329 (1485)
.-.+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11223333 578999999998
No 448
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.23 E-value=0.65 Score=51.94 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...++|+|+|-||+||||+|..+..-.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 356899999999999999998877643
No 449
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=83.22 E-value=2.3 Score=45.08 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc-ccccccc-CeeEEEEEcCccCHHHHHHHHHHhhcCCCC---------------C--
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND-KQVQYYF-DLKAWTCVSDDFDVIWLTTIILRSITKQTI---------------D-- 302 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------------~-- 302 (1485)
+.+.|+|..|.||||+.....-+ ....... ...+.+......-...+.+.+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47889999999999876544322 1111112 223333333333334444555444332110 0
Q ss_pred ---CCCHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 042986 303 ---NSDLNLLQEELKKQLSRKKFLLVLDDVWNE 332 (1485)
Q Consensus 303 ---~~~~~~~~~~l~~~l~~kr~LivlDdv~~~ 332 (1485)
..+.+.+.+.+.+.+.+- -+||+|.+...
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 023455556665544443 47889999653
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.15 E-value=0.59 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.03 E-value=0.61 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999984
No 452
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.98 E-value=2.2 Score=51.40 Aligned_cols=53 Identities=9% Similarity=-0.072 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
-.++.|.|.+|+||||+|.++......+ +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4688899999999999998888643322 112466776544 4667777666544
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.94 E-value=0.61 Score=51.99 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.87 E-value=0.61 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.86 E-value=0.61 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.83 E-value=0.62 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 457
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.75 E-value=0.33 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=82.72 E-value=0.63 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999974
No 459
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.55 E-value=0.77 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.46 E-value=0.7 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+.|.|.|..|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999873
No 461
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=82.45 E-value=1.1 Score=51.89 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc--ccCeeEEEEEcCcc-CHHHHHHHHHHhhcCC-------CCCCCCHHH--
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQY--YFDLKAWTCVSDDF-DVIWLTTIILRSITKQ-------TIDNSDLNL-- 308 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 308 (1485)
-+.++|.|..|+|||+|+.++.+...... .=+.++++-+++.. .+.++.+++.+.=... ..+......
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 35678899999999999999998654321 11356777777754 4556666665431100 111111111
Q ss_pred ---HHHHHHHHh---CCCcEEEEEeCC
Q 042986 309 ---LQEELKKQL---SRKKFLLVLDDV 329 (1485)
Q Consensus 309 ---~~~~l~~~l---~~kr~LivlDdv 329 (1485)
..-.+.+++ +++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112233444 368999999998
No 462
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.40 E-value=0.64 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 463
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.33 E-value=0.66 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 468999999999999999999863
No 464
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=82.31 E-value=0.66 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999863
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=82.23 E-value=0.66 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 466
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.20 E-value=2.4 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 237 NDGGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 237 ~~~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.....++..|.|.+|.||||+.++.++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345788999999999999999999886
No 467
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.15 E-value=1.4 Score=60.56 Aligned_cols=84 Identities=20% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHH
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSITKQTI-----DNSDLNLLQEEL 313 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 313 (1485)
...+++-|+|++|+|||+||.++.. ....+=..++|+.+.+.++... ++.++.... ...+.++..+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Q ss_pred HHHhC-CCcEEEEEeCC
Q 042986 314 KKQLS-RKKFLLVLDDV 329 (1485)
Q Consensus 314 ~~~l~-~kr~LivlDdv 329 (1485)
++..+ .+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.13 E-value=0.67 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999974
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.08 E-value=0.95 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.05 E-value=0.71 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 239 GGFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 239 ~~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
....+|+|+|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 471
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.05 E-value=0.78 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
-.+++|+|+.|.||||+++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 36999999999999999999876
No 472
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=81.92 E-value=0.72 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
--|+|+|.+|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46789999999999999999864
No 473
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=81.78 E-value=0.69 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35779999999999999999864
No 474
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=81.76 E-value=0.85 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.74 E-value=0.85 Score=48.21 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
...+|.|.|+.|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998543
No 476
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.68 E-value=3 Score=49.13 Aligned_cols=54 Identities=17% Similarity=0.011 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCccCHHHHHHHHHHhh
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDDFDVIWLTTIILRSI 296 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 296 (1485)
.-.++.|.|.+|+||||+|..+......+. =..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHHH
Confidence 346889999999999999988887433211 1246666554 35566776666443
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.60 E-value=0.8 Score=53.42 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
...+|.|+|.+|+||||+|..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999998888743
No 478
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=81.57 E-value=2.9 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHH
Q 042986 241 FSVIPIIGMGGLGKTTLAQLV 261 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v 261 (1485)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999998
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.42 E-value=0.81 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 480
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.42 E-value=0.71 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
No 481
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=81.26 E-value=1.4 Score=51.48 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccccccC-eeEEEEEcCccC-HHHHHHHHHHhhc--------CCCCCCCC----
Q 042986 241 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQYYFD-LKAWTCVSDDFD-VIWLTTIILRSIT--------KQTIDNSD---- 305 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~il~~l~--------~~~~~~~~---- 305 (1485)
-+.++|+|..|+|||+|| ..+.+.. .-+ .++++-+++... +.++.+.+.+.=. .+..+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999996 5777743 234 357777887643 4444444433210 01111111
Q ss_pred ----HHHHHHHHHHHhCCCcEEEEEeCC
Q 042986 306 ----LNLLQEELKKQLSRKKFLLVLDDV 329 (1485)
Q Consensus 306 ----~~~~~~~l~~~l~~kr~LivlDdv 329 (1485)
.-.+.+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122344444 589999999998
No 482
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=80.96 E-value=0.94 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999874
No 483
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=80.94 E-value=0.76 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998753
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.85 E-value=1.6 Score=45.54 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYNDKQ 266 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 266 (1485)
....|.|.|..|+||||+++.+.+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998543
No 485
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.80 E-value=0.79 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042986 240 GFSVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 240 ~~~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
...+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999996
No 486
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=80.78 E-value=0.81 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.71 E-value=0.65 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-.+++|+|..|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 368999999999999999999863
No 488
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.70 E-value=0.8 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
-.+++|+|..|+|||||++.+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999988743
No 489
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=80.66 E-value=0.97 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 490
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.65 E-value=0.81 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYN 263 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~ 263 (1485)
.++.|+|.+|+||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999998886
No 491
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=80.53 E-value=0.83 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=80.52 E-value=0.8 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
.--|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999864
No 493
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=80.50 E-value=1.6 Score=51.18 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcCc
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSDD 282 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 282 (1485)
-+.++|.|..|+|||+|++++.+.. +-+.++++-+++.
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER 258 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGER 258 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred CCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 4678999999999999999998742 3356788888876
No 494
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=80.44 E-value=0.85 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 495
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.39 E-value=0.83 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
--|.|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999887764
No 496
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=80.38 E-value=1 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999874
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=80.28 E-value=0.94 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042986 243 VIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 243 vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
-|+|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 498
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.23 E-value=0.87 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYND 264 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~ 264 (1485)
++|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999999873
No 499
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.16 E-value=0.92 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc
Q 042986 242 SVIPIIGMGGLGKTTLAQLVYNDK 265 (1485)
Q Consensus 242 ~vi~I~G~gGiGKTtLa~~v~~~~ 265 (1485)
++|+|.|-||+||||+|..+..-.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999998887643
No 500
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.11 E-value=1 Score=48.34 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCeeEEEEEcC
Q 042986 241 FSVIPIIGMGGLGKTTLAQLVYNDKQVQYYFDLKAWTCVSD 281 (1485)
Q Consensus 241 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 281 (1485)
-.++.|+|.+|+||||||.++...... .=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence 368999999999999999877653211 113466666444
Done!