BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042987
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 231/470 (49%), Gaps = 27/470 (5%)
Query: 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSV 64
+ SPG GHL +VE K ++ H +I P S + S+ ++ SV
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP--PSKAQRTVLDSLPSSISSV 66
Query: 65 TFHQLPPPVSGLPDTLRSPADFPALVYELGELNNPKLHETLITISKRSNL-KAFVIDFFC 123
PPV L D L S + + +NP+L + + + L A V+D F
Sbjct: 67 FL----PPVD-LTD-LSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFG 120
Query: 124 NPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSTLLNFPGFPPFP 183
AF V+ +P Y ++ T +VL+ L+LP L + + FREL L+ PG P
Sbjct: 121 TDAFDVAVE-FHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM-LPGCVPVA 178
Query: 184 ARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGETSP 243
+D P DR+ YK L+ + ++ G++VNTF LE AIKA+ E PG P
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE----PGLDKP 234
Query: 244 PLYCIGPVVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXXKQLKEMAIGLE 303
P+Y +GP+V ECL WLD++P +QL E+A+GL
Sbjct: 235 PVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 304 RSGVKFLWVVRAPAPDSIENRSSLES--------LLPEGFLDRTKDRGLVVESWAPQVEV 355
S +FLWV+R+P+ I N S +S LP GFL+RTK RG V+ WAPQ +V
Sbjct: 295 DSEQRFLWVIRSPS--GIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQV 352
Query: 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415
L H S GGF+THCGWNS LE V +G+P++AWPLYAEQKM ++ E+++ L +
Sbjct: 353 LAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGD-- 410
Query: 416 DRLVSAAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVAL 465
D LV E+ + V LM+ E+G+ D G+S AL
Sbjct: 411 DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 46/481 (9%)
Query: 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVSSAGTDDYIASVSATA 61
++F +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSGLPDTLRSPADFPALVYELGELNNPKLHETLITISKRSNLKAFV 118
P + LP PP P L +F L + E P + T+ TI + + V
Sbjct: 67 PQIQLIDLPEVEPP----PQELLKSPEFYILTFL--ESLIPHVKATIKTILS-NKVVGLV 119
Query: 119 IDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSTLLNFPG 178
+DFFC V + IP+Y + T+ L+ L L + LLN PG
Sbjct: 120 LDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 179 FP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237
P+ + +++G Y + + G+IVNTF LE+ +I A+ +
Sbjct: 179 ISNQVPSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD-- 235
Query: 238 PGETSPPLYCIGPVVXXXXXX--XXXXXXHE-CLSWLDSKPSRXXXXXXXXXXXXXXX-K 293
E PP+Y +GP++ H+ L WLD +P +
Sbjct: 236 --EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 294 QLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLD--RTKDRGLVVESWAP 351
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ WAP
Sbjct: 294 QIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAP 341
Query: 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTR 411
QVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 412 SEEK-DRLVSAAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
K +V+A E+E+ + +LMD K DGGSS +++ L++
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
Query: 471 S 471
Sbjct: 460 D 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 46/481 (9%)
Query: 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVSSAGTDDYIASVSATA 61
++F +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSGLPDTLRSPADFPALVYELGELNNPKLHETLITISKRSNLKAFV 118
P + LP PP P L +F L + E P + T+ TI + + V
Sbjct: 67 PQIQLIDLPEVEPP----PQELLKSPEFYILTFL--ESLIPHVKATIKTILS-NKVVGLV 119
Query: 119 IDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSTLLNFPG 178
+DFFC V + IP+Y + T+ L+ L L + LLN PG
Sbjct: 120 LDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 179 FP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237
P+ + +++G Y + + G+IVNTF LE+ +I A+ +
Sbjct: 179 ISNQVPSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD-- 235
Query: 238 PGETSPPLYCIGPVVXXXXXX--XXXXXXHE-CLSWLDSKPSRXXXXXXXXXXXXXXX-K 293
E PP+Y +GP++ H+ L WLD +P +
Sbjct: 236 --EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 294 QLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLD--RTKDRGLVVESWAP 351
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ WAP
Sbjct: 294 QIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAP 341
Query: 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTR 411
QVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 412 SEEK-DRLVSAAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
K +V+A E+E+ + +LMD K DGGSS +++ L++
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
Query: 471 S 471
Sbjct: 460 D 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/497 (23%), Positives = 203/497 (40%), Gaps = 55/497 (11%)
Query: 2 KDTIVFYTSPGRGHLNSMVELGKLILT--YHPCFSIDIIIPTAPFVSSAGTDDYIASVSA 59
K +V P +GH+N + +L KL+ +H F ++ + S G +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITF-VNTEYNHKRLLKSRGPKAFDGFTD- 65
Query: 60 TAPSVTFHQLPPPVSGLPDTLRSPADFPALVYELGELNNPKLHETLITISKRSNL---KA 116
F +P ++ + D P L + + E L ++ +N+
Sbjct: 66 ----FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTC 121
Query: 117 FVIDFFCNPAFQVSSST-LSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRE------- 168
V D C +F + ++ +P YF+++ L ++ + + F++
Sbjct: 122 LVSD--CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 169 -LGSTLLNFPGFPPFPARDMA--LPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEE 225
L + + PG F +D+ + + + + ++ ++ K +++NTF LE
Sbjct: 180 CLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 226 RAIKAMLEGQCTPGETSPPLYCIGPVVXXXXXXXXXXXXH-----------ECLSWLDSK 274
I A+ T P +Y IGP+ ECL WL+SK
Sbjct: 240 DVINAL-------SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK 292
Query: 275 PSRXXXXXXXXXXXXXXXKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEG 334
+QL E A GL FLW++R PD + S + S
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR---PDLVIGGSVIFS---SE 346
Query: 335 FLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKM 394
F + DRGL+ SW PQ +VLNH S+GGF+THCGWNS E +CAGVPML WP +A+Q
Sbjct: 347 FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 395 IRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXX 454
+ E ++G+ + D V EL + ++E++ +KG+
Sbjct: 406 DCRFICNEWEIGMEI------DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
Query: 455 XXDGGSSRVALDNLVES 471
GG S + L+ +++
Sbjct: 460 TRPGGCSYMNLNKVIKD 476
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 127/299 (42%), Gaps = 31/299 (10%)
Query: 176 FPGFPPFPARDMALP---MHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAML 232
PGFP A D LP + D + L G+++ ++ V +N+F I ++
Sbjct: 179 LPGFPELKASD--LPEGVIKDIDVPFATMLHKMGLELPRANAVAINSF-----ATIHPLI 231
Query: 233 EGQCTPGETSPPLYCIGPVVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXX 292
E + L +GP H CL WLD +
Sbjct: 232 ENELN--SKFKLLLNVGPF-NLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPP 288
Query: 293 KQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQ 352
+L +A LE G F+W R + LP+GFL+RTK +G +V +WAPQ
Sbjct: 289 HELTALAESLEECGFPFIWSFRGDPKEK----------LPKGFLERTKTKGKIV-AWAPQ 337
Query: 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412
VE+L H SVG F+TH GWNSVLE + GVPM++ P + +Q + + +++G+ V
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV--- 394
Query: 413 EEKDRLVSAAELEQRVSEL-MDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
D V E ++ EL M SEKG G+S + L++
Sbjct: 395 ---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 144/314 (45%), Gaps = 53/314 (16%)
Query: 142 FTTAG-SVLAANLYLPTLHKNTTKS-FRELGSTLLNF-PGFPPFPARDMALPMHDREGKV 198
F TAG + L+ ++Y+ + + S + LLNF PG RD+ +EG V
Sbjct: 139 FWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDL------QEGIV 192
Query: 199 YKGLVD--------TGIQMAKSAGVIVNTFELLEE---RAIKAMLEGQCTPGE---TSPP 244
+ L G + K+ V +N+FE L++ +K+ L+ G +PP
Sbjct: 193 FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPP 252
Query: 245 LYCIGPVVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXXKQLKEMAIGLER 304
PVV CL WL + ++ ++ LE
Sbjct: 253 -----PVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEA 298
Query: 305 SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGF 364
S V F+W +R A LPEGFL++T+ G+VV WAPQ EVL HE+VG F
Sbjct: 299 SRVPFIWSLRDKA----------RVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVGAF 347
Query: 365 VTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAEL 424
VTHCGWNS+ E V GVP++ P + +Q++ +V + +++G+ + + + + + L
Sbjct: 348 VTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI-----EGGVFTKSGL 402
Query: 425 EQRVSELMDSEKGR 438
+++ EKG+
Sbjct: 403 MSCFDQILSQEKGK 416
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKV 405
V W PQ+++L S F+TH G S +E + VPM+A P AEQ M +V E+ +
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 406 GLAVTRSEEKDRLVSAAELEQRV 428
G + R + V+A +L + V
Sbjct: 366 GRHIPRDQ-----VTAEKLREAV 383
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 349 WAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
W PQ ++L H F+TH G N + E + G+P + PL+A+Q
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
V W PQ+ +L + FVTH G EG+ PM+A P +Q
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387
+ESW PQ +L H + V H G + L + AGVP L++P
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 347 ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVG 406
W P VL H +TH +VLE AGVP++ P +A + A V E+ +G
Sbjct: 286 HQWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
>pdb|1Y07|A Chain A, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|B Chain B, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|C Chain C, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|D Chain D, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
Length = 128
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 296 KEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV 355
+E++ L++ F + APA S+ S + +P G +D K++ + P VEV
Sbjct: 3 RELSFFLQKESAGFFLGMDAPAGSSVACGSEVLRAVPVGTVDAAKEKHI------PVVEV 56
Query: 356 LNHE 359
HE
Sbjct: 57 HGHE 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,805,394
Number of Sequences: 62578
Number of extensions: 497563
Number of successful extensions: 1356
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 18
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)