Query 042987
Match_columns 481
No_of_seqs 156 out of 1477
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00164 glucosyltransferase; 100.0 1.1E-70 2.4E-75 548.6 48.4 471 1-481 1-480 (480)
2 PLN02992 coniferyl-alcohol glu 100.0 2.8E-69 6E-74 533.1 45.5 450 3-475 6-470 (481)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1E-68 2.2E-73 528.9 46.9 437 3-474 8-450 (451)
4 PLN03015 UDP-glucosyl transfer 100.0 1.1E-68 2.4E-73 525.6 45.2 456 1-472 1-466 (470)
5 PLN03004 UDP-glycosyltransfera 100.0 6.4E-69 1.4E-73 528.0 42.1 447 2-463 3-450 (451)
6 PLN02555 limonoid glucosyltran 100.0 3.5E-68 7.6E-73 526.8 46.3 451 3-477 8-472 (480)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.4E-68 9.5E-73 528.0 46.0 447 3-477 10-474 (477)
8 PLN02173 UDP-glucosyl transfer 100.0 5.3E-68 1.2E-72 521.2 45.4 425 3-473 6-447 (449)
9 PLN02207 UDP-glycosyltransfera 100.0 8.3E-68 1.8E-72 521.7 45.8 452 1-474 1-465 (468)
10 PLN02534 UDP-glycosyltransfera 100.0 7.6E-67 1.6E-71 517.9 45.1 449 3-475 9-487 (491)
11 PLN02562 UDP-glycosyltransfera 100.0 8.8E-67 1.9E-71 516.9 44.6 430 3-473 7-448 (448)
12 PLN02554 UDP-glycosyltransfera 100.0 1.2E-66 2.6E-71 521.8 45.3 457 1-476 1-480 (481)
13 PLN02208 glycosyltransferase f 100.0 1.8E-66 3.9E-71 511.7 45.5 424 3-476 5-441 (442)
14 PLN02210 UDP-glucosyl transfer 100.0 2.4E-66 5.1E-71 514.3 45.6 430 3-473 9-454 (456)
15 PLN02152 indole-3-acetate beta 100.0 2.6E-66 5.6E-71 510.2 44.8 436 1-472 1-454 (455)
16 PLN02764 glycosyltransferase f 100.0 5.6E-66 1.2E-70 505.1 45.0 430 2-477 5-448 (453)
17 PLN00414 glycosyltransferase f 100.0 5.8E-66 1.3E-70 508.7 45.2 427 2-478 4-444 (446)
18 PLN02167 UDP-glycosyltransfera 100.0 4.4E-66 9.6E-71 516.9 44.0 452 3-474 4-472 (475)
19 PLN02448 UDP-glycosyltransfera 100.0 1.2E-65 2.7E-70 512.8 45.4 435 3-475 11-458 (459)
20 PLN03007 UDP-glucosyltransfera 100.0 1.5E-65 3.2E-70 514.7 45.6 451 3-475 6-481 (482)
21 PLN02670 transferase, transfer 100.0 2E-65 4.4E-70 505.3 44.1 443 3-476 7-467 (472)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.8E-46 2.1E-50 371.8 29.7 395 4-474 22-467 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.3E-46 1.1E-50 380.6 9.7 179 243-453 246-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.8E-42 3.9E-47 343.5 28.1 378 8-472 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.1E-42 2.3E-47 346.8 20.6 384 4-468 2-398 (401)
26 COG1819 Glycosyl transferases, 100.0 9E-40 1.9E-44 320.1 27.4 386 3-475 2-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.2E-40 2.6E-45 341.1 19.0 411 3-452 6-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.6E-26 3.4E-31 223.9 29.3 323 2-446 1-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 8.8E-24 1.9E-28 202.0 28.5 326 4-449 2-340 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 6.3E-23 1.4E-27 198.0 25.6 302 4-431 2-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.9E-21 4.1E-26 187.2 24.1 124 278-436 189-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 5.4E-18 1.2E-22 166.3 30.7 343 2-473 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.9E-16 4.2E-21 154.9 29.8 316 4-436 1-326 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 2.2E-16 4.7E-21 155.4 22.6 352 3-469 6-383 (385)
35 TIGR01133 murG undecaprenyldip 99.7 3.6E-15 7.8E-20 145.9 28.1 78 351-436 243-323 (348)
36 PRK13609 diacylglycerol glucos 99.7 7.5E-15 1.6E-19 145.3 21.9 135 276-436 201-340 (380)
37 COG4671 Predicted glycosyl tra 99.6 1.1E-13 2.4E-18 126.4 24.2 340 3-435 10-366 (400)
38 PRK00025 lpxB lipid-A-disaccha 99.6 4.7E-14 1E-18 139.7 23.6 108 352-473 255-376 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 6.2E-14 1.3E-18 131.6 21.2 104 278-398 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.6 5E-13 1.1E-17 132.3 25.7 166 275-474 200-371 (391)
41 PLN02605 monogalactosyldiacylg 99.6 1.3E-12 2.8E-17 129.2 24.7 83 342-436 265-350 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 9.6E-16 2.1E-20 133.0 1.8 136 279-436 1-146 (167)
43 TIGR03492 conserved hypothetic 99.5 3.3E-11 7.2E-16 118.8 28.1 168 243-436 180-366 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 2.7E-13 5.9E-18 113.8 1.4 124 5-148 1-134 (139)
45 PLN02871 UDP-sulfoquinovose:DA 99.3 8.7E-09 1.9E-13 104.7 30.3 140 279-448 264-415 (465)
46 cd03814 GT1_like_2 This family 99.3 2.4E-08 5.3E-13 97.6 31.9 82 341-436 246-334 (364)
47 cd03800 GT1_Sucrose_synthase T 99.2 8.3E-08 1.8E-12 95.5 30.5 93 341-447 282-382 (398)
48 cd03823 GT1_ExpE7_like This fa 99.1 1.8E-07 4E-12 91.2 31.9 82 341-436 242-331 (359)
49 cd03794 GT1_wbuB_like This fam 99.1 1.2E-07 2.6E-12 93.4 30.6 144 278-449 220-381 (394)
50 cd03818 GT1_ExpC_like This fam 99.1 3.2E-07 7E-12 91.3 33.3 94 341-448 280-381 (396)
51 cd03817 GT1_UGDG_like This fam 99.1 3.4E-07 7.3E-12 89.7 31.4 95 341-450 258-360 (374)
52 cd04962 GT1_like_5 This family 99.1 2.9E-07 6.3E-12 90.7 30.0 92 342-447 253-350 (371)
53 COG3980 spsG Spore coat polysa 99.0 2.2E-08 4.8E-13 89.4 17.9 141 279-446 160-302 (318)
54 PRK10307 putative glycosyl tra 99.0 2E-06 4.4E-11 86.1 34.5 115 342-475 284-408 (412)
55 cd03816 GT1_ALG1_like This fam 99.0 1.2E-06 2.5E-11 87.8 32.3 91 342-448 294-399 (415)
56 PRK05749 3-deoxy-D-manno-octul 99.0 4.2E-07 9.1E-12 91.4 28.2 100 353-470 314-419 (425)
57 cd03801 GT1_YqgM_like This fam 99.0 2.2E-06 4.7E-11 83.5 32.5 82 341-436 255-343 (374)
58 cd03808 GT1_cap1E_like This fa 99.0 1.8E-06 3.9E-11 83.8 31.6 331 4-447 1-343 (359)
59 TIGR00236 wecB UDP-N-acetylglu 99.0 4.8E-08 1E-12 96.1 20.5 84 342-444 255-341 (365)
60 cd03795 GT1_like_4 This family 99.0 1.1E-06 2.4E-11 85.9 29.3 148 279-449 192-348 (357)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 1.2E-07 2.6E-12 93.3 20.6 135 277-436 198-339 (363)
62 cd03798 GT1_wlbH_like This fam 98.9 9E-06 2E-10 79.3 32.5 82 341-436 258-346 (377)
63 cd03820 GT1_amsD_like This fam 98.9 3.8E-06 8.3E-11 81.1 29.2 92 342-447 235-333 (348)
64 PF04007 DUF354: Protein of un 98.8 7E-06 1.5E-10 78.3 28.1 104 13-145 10-113 (335)
65 TIGR03449 mycothiol_MshA UDP-N 98.8 2.6E-05 5.7E-10 77.9 33.9 92 342-447 283-382 (405)
66 TIGR02472 sucr_P_syn_N sucrose 98.8 1.5E-05 3.2E-10 80.5 32.0 82 341-436 316-408 (439)
67 cd03805 GT1_ALG2_like This fam 98.8 2.3E-05 5.1E-10 77.8 31.3 92 341-447 279-378 (392)
68 cd03825 GT1_wcfI_like This fam 98.8 3E-05 6.6E-10 75.9 31.8 92 342-447 244-344 (365)
69 cd03796 GT1_PIG-A_like This fa 98.8 1.7E-05 3.7E-10 79.1 29.9 79 341-435 249-334 (398)
70 cd03799 GT1_amsK_like This is 98.8 2.3E-05 4.9E-10 76.5 30.0 92 341-446 235-340 (355)
71 cd03819 GT1_WavL_like This fam 98.8 2.2E-05 4.7E-10 76.8 29.9 148 278-449 185-347 (355)
72 cd03821 GT1_Bme6_like This fam 98.7 3.7E-05 8.1E-10 75.1 30.0 91 341-447 261-359 (375)
73 cd03822 GT1_ecORF704_like This 98.7 2.3E-05 5E-10 76.6 27.8 94 341-449 246-350 (366)
74 PRK01021 lpxB lipid-A-disaccha 98.7 9.4E-06 2E-10 82.0 24.8 184 243-451 381-589 (608)
75 cd03811 GT1_WabH_like This fam 98.7 2.2E-05 4.7E-10 75.9 27.3 82 341-436 245-334 (353)
76 cd05844 GT1_like_7 Glycosyltra 98.7 2.4E-05 5.1E-10 76.9 27.2 93 341-447 244-350 (367)
77 cd04951 GT1_WbdM_like This fam 98.7 3.4E-05 7.4E-10 75.4 27.9 78 342-435 245-327 (360)
78 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00022 4.7E-09 77.0 34.7 96 341-448 547-652 (1050)
79 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1.2E-05 2.6E-10 78.7 23.6 130 278-433 202-338 (365)
80 PRK14089 ipid-A-disaccharide s 98.6 2.7E-06 5.9E-11 81.7 18.1 181 243-468 144-344 (347)
81 TIGR02470 sucr_synth sucrose s 98.6 0.00039 8.5E-09 73.3 35.2 92 342-445 619-725 (784)
82 cd03807 GT1_WbnK_like This fam 98.6 0.00016 3.5E-09 70.3 31.0 79 342-436 251-334 (365)
83 PRK09922 UDP-D-galactose:(gluc 98.6 2.5E-05 5.4E-10 76.7 24.0 147 279-450 181-343 (359)
84 cd03812 GT1_CapH_like This fam 98.6 9.1E-05 2E-09 72.4 28.1 81 341-436 248-333 (358)
85 PF02350 Epimerase_2: UDP-N-ac 98.6 1.2E-06 2.6E-11 84.8 13.9 259 90-435 48-319 (346)
86 COG1519 KdtA 3-deoxy-D-manno-o 98.6 0.0002 4.4E-09 68.7 28.1 330 11-452 57-405 (419)
87 TIGR03087 stp1 sugar transfera 98.5 8.7E-05 1.9E-09 73.9 27.3 91 341-447 279-376 (397)
88 PF02684 LpxB: Lipid-A-disacch 98.5 2.5E-05 5.4E-10 75.6 22.1 191 243-463 153-366 (373)
89 cd03802 GT1_AviGT4_like This f 98.5 0.00018 4E-09 69.5 27.9 125 280-434 173-308 (335)
90 TIGR03088 stp2 sugar transfera 98.5 0.00055 1.2E-08 67.5 31.2 91 342-446 255-351 (374)
91 KOG3349 Predicted glycosyltran 98.5 1.4E-06 3.1E-11 70.1 9.2 120 279-412 5-135 (170)
92 PRK15427 colanic acid biosynth 98.4 0.00048 1.1E-08 68.7 29.3 112 341-473 278-404 (406)
93 cd04955 GT1_like_6 This family 98.3 0.0014 3E-08 64.1 30.0 78 341-436 247-332 (363)
94 PRK15179 Vi polysaccharide bio 98.3 0.0017 3.7E-08 68.4 31.6 96 341-448 573-674 (694)
95 COG0381 WecB UDP-N-acetylgluco 98.2 0.00045 9.7E-09 65.8 22.3 335 1-445 1-349 (383)
96 cd03809 GT1_mtfB_like This fam 98.2 0.00041 8.9E-09 67.7 23.6 89 341-445 252-348 (365)
97 TIGR02149 glgA_Coryne glycogen 98.2 0.0025 5.3E-08 63.2 29.2 149 279-447 202-366 (388)
98 PLN00142 sucrose synthase 98.2 0.0025 5.5E-08 67.5 29.0 70 364-445 670-748 (815)
99 PLN02275 transferase, transfer 98.2 0.0042 9.2E-08 61.2 28.9 75 342-432 286-371 (371)
100 COG0763 LpxB Lipid A disacchar 98.1 0.00046 9.9E-09 65.6 20.1 199 244-472 157-379 (381)
101 PRK00654 glgA glycogen synthas 98.0 0.0026 5.6E-08 64.8 23.7 70 354-433 352-427 (466)
102 cd03791 GT1_Glycogen_synthase_ 98.0 0.0031 6.8E-08 64.5 24.1 133 279-433 297-441 (476)
103 PF00534 Glycos_transf_1: Glyc 97.9 0.00018 4E-09 62.3 11.8 148 276-446 13-171 (172)
104 cd03806 GT1_ALG11_like This fa 97.9 0.0089 1.9E-07 59.9 25.3 81 341-436 304-394 (419)
105 cd03792 GT1_Trehalose_phosphor 97.8 0.026 5.6E-07 55.6 27.4 89 342-446 252-350 (372)
106 cd04946 GT1_AmsK_like This fam 97.8 0.00068 1.5E-08 67.7 16.0 110 341-468 288-405 (407)
107 cd04949 GT1_gtfA_like This fam 97.8 0.0076 1.7E-07 59.3 23.4 100 341-451 260-363 (372)
108 TIGR02918 accessory Sec system 97.8 0.02 4.4E-07 58.5 25.9 103 341-450 375-483 (500)
109 PLN02949 transferase, transfer 97.7 0.068 1.5E-06 54.1 28.9 94 341-448 334-438 (463)
110 COG5017 Uncharacterized conser 97.7 0.00048 1E-08 54.7 10.0 110 280-413 2-125 (161)
111 PF13844 Glyco_transf_41: Glyc 97.7 0.00093 2E-08 66.2 14.3 142 276-436 283-432 (468)
112 TIGR02095 glgA glycogen/starch 97.7 0.036 7.8E-07 56.6 26.6 133 279-433 292-436 (473)
113 PRK15484 lipopolysaccharide 1, 97.7 0.0025 5.5E-08 63.0 17.5 114 342-475 257-378 (380)
114 PLN02846 digalactosyldiacylgly 97.6 0.1 2.2E-06 52.4 29.3 73 346-435 288-364 (462)
115 cd03804 GT1_wbaZ_like This fam 97.5 0.0006 1.3E-08 66.6 10.8 125 280-435 197-327 (351)
116 cd03813 GT1_like_3 This family 97.5 0.026 5.7E-07 57.6 22.6 92 341-445 353-454 (475)
117 PRK10017 colanic acid biosynth 97.5 0.14 3.1E-06 51.0 29.1 85 354-452 323-408 (426)
118 PRK15490 Vi polysaccharide bio 97.5 0.17 3.7E-06 51.6 29.8 115 341-475 454-576 (578)
119 cd04950 GT1_like_1 Glycosyltra 97.4 0.15 3.2E-06 50.3 32.1 80 341-436 253-342 (373)
120 PLN02316 synthase/transferase 97.3 0.39 8.5E-06 52.8 33.1 117 342-472 900-1031(1036)
121 PLN02501 digalactosyldiacylgly 97.2 0.25 5.3E-06 51.6 24.6 76 344-436 603-683 (794)
122 PF13692 Glyco_trans_1_4: Glyc 97.1 0.002 4.4E-08 53.2 7.8 80 341-434 52-135 (135)
123 PRK09814 beta-1,6-galactofuran 96.6 0.013 2.8E-07 56.8 10.0 109 342-470 207-331 (333)
124 cd01635 Glycosyltransferase_GT 96.6 0.21 4.5E-06 44.7 17.2 50 341-392 160-217 (229)
125 COG1817 Uncharacterized protei 96.5 0.7 1.5E-05 43.0 20.3 107 11-145 8-114 (346)
126 KOG4626 O-linked N-acetylgluco 96.5 0.12 2.6E-06 52.1 15.2 123 276-411 757-889 (966)
127 PHA01633 putative glycosyl tra 96.4 0.11 2.5E-06 49.9 14.8 85 341-434 200-307 (335)
128 TIGR02193 heptsyl_trn_I lipopo 95.7 0.18 4E-06 48.4 12.8 40 4-43 1-40 (319)
129 COG3914 Spy Predicted O-linked 95.7 0.18 3.8E-06 50.7 12.2 134 275-429 427-573 (620)
130 PRK10422 lipopolysaccharide co 95.5 2.6 5.7E-05 41.1 21.5 40 3-42 6-45 (352)
131 cd03789 GT1_LPS_heptosyltransf 95.5 2.1 4.5E-05 40.2 18.7 39 4-42 1-39 (279)
132 PRK10125 putative glycosyl tra 95.4 3.1 6.8E-05 41.4 28.9 61 353-428 301-365 (405)
133 PRK14098 glycogen synthase; Pr 95.4 0.32 7E-06 49.8 13.6 132 279-432 308-449 (489)
134 TIGR02201 heptsyl_trn_III lipo 95.3 3 6.4E-05 40.5 20.4 38 4-41 1-38 (344)
135 PF06722 DUF1205: Protein of u 95.2 0.033 7.1E-07 42.8 4.4 53 264-316 27-84 (97)
136 PF13477 Glyco_trans_4_2: Glyc 95.2 0.23 5E-06 41.0 10.1 102 4-142 1-106 (139)
137 PHA01630 putative group 1 glyc 95.1 0.53 1.2E-05 45.5 13.4 110 349-473 197-329 (331)
138 PF13524 Glyco_trans_1_2: Glyc 94.7 0.37 8E-06 36.5 9.1 56 367-436 9-64 (92)
139 PRK10916 ADP-heptose:LPS hepto 93.8 7.1 0.00015 38.0 21.0 38 4-41 2-39 (348)
140 TIGR02195 heptsyl_trn_II lipop 93.7 7.2 0.00016 37.6 19.4 38 4-41 1-38 (334)
141 TIGR02400 trehalose_OtsA alpha 93.6 0.9 1.9E-05 46.0 11.8 103 348-473 342-455 (456)
142 PF13579 Glyco_trans_4_4: Glyc 93.3 0.085 1.8E-06 44.3 3.5 97 18-143 6-104 (160)
143 PF06258 Mito_fiss_Elm1: Mitoc 93.2 8.1 0.00018 36.9 18.6 39 351-390 221-259 (311)
144 PF12000 Glyco_trans_4_3: Gkyc 92.6 2.1 4.5E-05 36.7 10.9 33 111-144 64-97 (171)
145 PRK10964 ADP-heptose:LPS hepto 91.5 13 0.00028 35.7 16.5 38 4-41 2-39 (322)
146 COG0859 RfaF ADP-heptose:LPS h 91.1 7.9 0.00017 37.4 14.5 40 3-42 2-41 (334)
147 cd03788 GT1_TPS Trehalose-6-Ph 90.8 1.3 2.9E-05 44.9 9.3 104 346-472 345-459 (460)
148 PLN02939 transferase, transfer 90.4 6.2 0.00013 43.2 13.9 83 342-433 837-930 (977)
149 PF08660 Alg14: Oligosaccharid 90.0 1.9 4E-05 37.1 8.1 118 8-143 3-129 (170)
150 PLN03063 alpha,alpha-trehalose 89.3 2 4.4E-05 46.7 9.5 100 354-476 371-479 (797)
151 TIGR03713 acc_sec_asp1 accesso 89.1 4.2 9.2E-05 41.9 11.3 92 342-452 409-507 (519)
152 PF13439 Glyco_transf_4: Glyco 88.0 7.2 0.00016 32.9 10.7 32 11-44 10-41 (177)
153 cd03793 GT1_Glycogen_synthase_ 87.4 2.6 5.6E-05 43.4 8.2 81 351-435 467-553 (590)
154 TIGR02919 accessory Sec system 85.9 24 0.00052 35.5 14.1 137 276-449 282-424 (438)
155 PRK14099 glycogen synthase; Pr 85.9 16 0.00035 37.4 13.3 38 3-42 4-47 (485)
156 PRK02797 4-alpha-L-fucosyltran 85.8 10 0.00023 35.6 10.6 81 342-432 206-292 (322)
157 PF07429 Glyco_transf_56: 4-al 83.3 33 0.00072 32.9 12.8 82 342-433 245-332 (360)
158 COG4370 Uncharacterized protei 82.6 5.1 0.00011 37.3 7.0 87 346-445 299-387 (412)
159 PRK06718 precorrin-2 dehydroge 82.5 20 0.00043 31.8 10.8 146 277-454 11-165 (202)
160 PF04413 Glycos_transf_N: 3-De 82.2 5.3 0.00012 34.9 6.9 97 11-143 29-126 (186)
161 COG1618 Predicted nucleotide k 81.0 6.7 0.00014 33.1 6.5 58 1-72 4-61 (179)
162 TIGR02398 gluc_glyc_Psyn gluco 80.9 65 0.0014 32.9 15.0 110 345-476 365-484 (487)
163 PRK13932 stationary phase surv 79.6 14 0.00031 33.9 9.0 116 1-142 4-132 (257)
164 PF06925 MGDG_synth: Monogalac 79.6 2 4.3E-05 36.9 3.3 44 96-143 76-124 (169)
165 COG0496 SurE Predicted acid ph 78.9 17 0.00037 33.2 9.0 27 15-44 12-38 (252)
166 PF00731 AIRC: AIR carboxylase 78.8 38 0.00081 28.4 10.9 138 279-453 2-148 (150)
167 COG0003 ArsA Predicted ATPase 77.0 23 0.00051 33.9 9.9 43 3-47 2-45 (322)
168 PRK02261 methylaspartate mutas 76.9 6.1 0.00013 32.6 5.3 41 1-43 1-42 (137)
169 PF04464 Glyphos_transf: CDP-G 75.1 4.7 0.0001 39.6 5.0 116 342-469 252-368 (369)
170 PF02374 ArsA_ATPase: Anion-tr 73.5 6.2 0.00013 37.6 5.1 39 5-45 3-42 (305)
171 PRK14501 putative bifunctional 73.2 21 0.00046 38.6 9.7 107 346-475 346-463 (726)
172 cd07039 TPP_PYR_POX Pyrimidine 73.0 55 0.0012 27.8 10.4 28 361-388 64-97 (164)
173 TIGR01470 cysG_Nterm siroheme 72.6 44 0.00096 29.7 10.1 148 278-454 11-165 (205)
174 cd02067 B12-binding B12 bindin 72.3 6.5 0.00014 31.3 4.3 35 4-40 1-35 (119)
175 PF05159 Capsule_synth: Capsul 71.8 22 0.00048 33.0 8.4 42 344-388 185-226 (269)
176 PF01075 Glyco_transf_9: Glyco 71.4 18 0.0004 32.9 7.7 99 276-386 104-208 (247)
177 COG0052 RpsB Ribosomal protein 70.1 5.3 0.00012 36.0 3.5 35 113-148 156-192 (252)
178 cd07038 TPP_PYR_PDC_IPDC_like 69.4 38 0.00083 28.7 8.6 28 361-388 60-93 (162)
179 COG0438 RfaG Glycosyltransfera 68.7 1E+02 0.0022 28.7 16.3 81 342-436 257-344 (381)
180 PRK08057 cobalt-precorrin-6x r 68.7 39 0.00085 31.0 9.0 35 1-42 1-35 (248)
181 PRK07206 hypothetical protein; 67.3 18 0.00039 36.2 7.2 34 1-41 1-34 (416)
182 KOG0853 Glycosyltransferase [C 66.4 46 0.00099 33.8 9.5 55 372-436 381-435 (495)
183 PLN02470 acetolactate synthase 65.8 64 0.0014 34.0 11.2 91 283-387 2-109 (585)
184 cd00550 ArsA_ATPase Oxyanion-t 64.8 27 0.00059 32.2 7.3 36 5-42 3-38 (254)
185 COG0541 Ffh Signal recognition 63.5 28 0.0006 34.5 7.2 41 4-46 102-142 (451)
186 TIGR00725 conserved hypothetic 61.7 48 0.001 28.1 7.7 37 352-388 84-123 (159)
187 TIGR00715 precor6x_red precorr 61.6 66 0.0014 29.7 9.1 33 4-43 2-34 (256)
188 COG4394 Uncharacterized protei 60.1 1.5E+02 0.0033 27.7 11.1 40 343-385 239-281 (370)
189 TIGR01162 purE phosphoribosyla 59.0 83 0.0018 26.5 8.3 32 419-454 116-147 (156)
190 PRK13935 stationary phase surv 58.8 41 0.00088 31.0 7.1 99 19-142 16-127 (253)
191 PRK04885 ppnK inorganic polyph 58.2 22 0.00047 33.1 5.4 54 358-435 35-94 (265)
192 PF02310 B12-binding: B12 bind 58.1 23 0.00051 28.0 5.1 35 4-40 2-36 (121)
193 COG1703 ArgK Putative periplas 57.9 60 0.0013 30.6 8.0 40 3-44 52-91 (323)
194 PF02441 Flavoprotein: Flavopr 56.3 20 0.00043 29.1 4.4 36 3-41 1-36 (129)
195 COG3660 Predicted nucleoside-d 56.1 1.7E+02 0.0037 27.1 19.0 38 348-386 234-271 (329)
196 PF12146 Hydrolase_4: Putative 56.1 26 0.00057 25.6 4.5 34 3-38 16-49 (79)
197 PF02844 GARS_N: Phosphoribosy 55.7 46 0.00099 25.7 5.9 32 4-41 2-33 (100)
198 PRK13933 stationary phase surv 55.5 54 0.0012 30.2 7.4 23 19-44 16-38 (253)
199 cd07035 TPP_PYR_POX_like Pyrim 54.9 1.2E+02 0.0027 25.1 9.7 26 363-388 62-93 (155)
200 TIGR02015 BchY chlorophyllide 54.3 37 0.0008 34.0 6.7 32 4-42 287-318 (422)
201 PF06506 PrpR_N: Propionate ca 54.2 18 0.00039 31.2 4.0 31 359-390 33-63 (176)
202 COG0801 FolK 7,8-dihydro-6-hyd 53.7 26 0.00057 29.6 4.6 35 279-313 3-37 (160)
203 PRK14077 pnk inorganic polypho 53.6 27 0.00057 32.9 5.2 55 357-435 63-121 (287)
204 PRK12311 rpsB 30S ribosomal pr 52.3 19 0.00042 34.4 4.1 34 112-146 151-186 (326)
205 PRK02155 ppnK NAD(+)/NADH kina 51.6 30 0.00064 32.7 5.2 55 357-435 62-120 (291)
206 TIGR00087 surE 5'/3'-nucleotid 51.2 76 0.0017 29.1 7.6 99 19-142 16-127 (244)
207 cd01974 Nitrogenase_MoFe_beta 50.7 74 0.0016 32.1 8.3 35 100-142 368-402 (435)
208 KOG2825 Putative arsenite-tran 49.9 31 0.00067 31.5 4.6 127 5-140 21-166 (323)
209 PF02826 2-Hacid_dh_C: D-isome 49.4 80 0.0017 27.2 7.3 105 277-429 37-142 (178)
210 PF03808 Glyco_tran_WecB: Glyc 49.3 98 0.0021 26.5 7.7 83 216-315 53-135 (172)
211 PRK00784 cobyric acid synthase 49.1 2.4E+02 0.0052 28.9 11.8 37 1-39 1-38 (488)
212 COG2894 MinD Septum formation 48.7 55 0.0012 29.4 5.9 36 4-41 3-40 (272)
213 KOG0780 Signal recognition par 48.5 86 0.0019 30.7 7.6 41 4-46 103-143 (483)
214 PRK05632 phosphate acetyltrans 48.4 2E+02 0.0044 31.0 11.5 36 1-38 1-37 (684)
215 KOG1111 N-acetylglucosaminyltr 47.9 2.3E+02 0.0049 27.6 10.1 85 289-386 207-301 (426)
216 cd07037 TPP_PYR_MenD Pyrimidin 47.4 90 0.002 26.5 7.1 27 362-388 62-94 (162)
217 PRK01911 ppnK inorganic polyph 47.4 39 0.00085 31.9 5.3 57 355-435 61-121 (292)
218 cd02071 MM_CoA_mut_B12_BD meth 46.8 38 0.00082 27.1 4.5 38 4-43 1-38 (122)
219 PRK01231 ppnK inorganic polyph 46.7 1.2E+02 0.0026 28.7 8.5 54 358-435 62-119 (295)
220 PLN03064 alpha,alpha-trehalose 46.6 91 0.002 34.7 8.5 99 354-475 455-562 (934)
221 PF02951 GSH-S_N: Prokaryotic 45.4 32 0.00069 27.5 3.7 37 4-42 2-41 (119)
222 PRK02649 ppnK inorganic polyph 45.0 41 0.00089 32.0 5.1 55 357-435 67-125 (305)
223 PRK05986 cob(I)alamin adenolsy 44.7 2.2E+02 0.0047 25.0 10.5 33 4-38 24-56 (191)
224 PRK06276 acetolactate synthase 43.8 1.4E+02 0.003 31.5 9.4 27 361-387 64-96 (586)
225 PRK03378 ppnK inorganic polyph 43.7 42 0.00091 31.7 4.9 55 357-435 62-120 (292)
226 PRK04539 ppnK inorganic polyph 43.7 44 0.00095 31.7 5.0 55 357-435 67-125 (296)
227 COG1422 Predicted membrane pro 43.5 59 0.0013 28.4 5.3 51 422-474 58-109 (201)
228 cd00561 CobA_CobO_BtuR ATP:cor 43.3 2.1E+02 0.0044 24.3 10.9 33 4-38 4-36 (159)
229 PF00862 Sucrose_synth: Sucros 43.3 39 0.00084 34.2 4.7 125 12-143 295-432 (550)
230 TIGR01012 Sa_S2_E_A ribosomal 43.2 23 0.00049 31.2 2.8 33 113-146 108-142 (196)
231 PRK12446 undecaprenyldiphospho 42.7 50 0.0011 32.2 5.5 98 279-388 4-122 (352)
232 KOG3339 Predicted glycosyltran 42.6 47 0.001 28.7 4.4 24 7-30 42-65 (211)
233 cd02070 corrinoid_protein_B12- 42.3 53 0.0011 29.0 5.1 37 3-41 83-119 (201)
234 PRK07710 acetolactate synthase 42.1 1.2E+02 0.0027 31.7 8.7 27 361-387 79-111 (571)
235 PRK03372 ppnK inorganic polyph 42.1 48 0.001 31.6 5.0 55 357-435 71-129 (306)
236 COG3195 Uncharacterized protei 42.0 1.5E+02 0.0032 25.1 7.1 75 371-452 88-164 (176)
237 TIGR00173 menD 2-succinyl-5-en 41.8 2.1E+02 0.0045 28.8 9.9 26 361-386 64-95 (432)
238 PRK12342 hypothetical protein; 41.5 48 0.001 30.6 4.8 39 100-143 100-144 (254)
239 PRK07313 phosphopantothenoylcy 41.0 2.4E+02 0.0052 24.5 12.1 77 355-433 74-179 (182)
240 PRK04020 rps2P 30S ribosomal p 40.9 23 0.00049 31.4 2.5 33 113-146 114-148 (204)
241 PRK03359 putative electron tra 40.6 52 0.0011 30.4 4.9 40 100-144 103-148 (256)
242 PRK06321 replicative DNA helic 40.6 36 0.00078 34.7 4.2 35 5-41 229-264 (472)
243 PRK05647 purN phosphoribosylgl 40.4 1.6E+02 0.0034 26.0 7.8 37 2-41 1-37 (200)
244 PRK08322 acetolactate synthase 40.4 1.5E+02 0.0033 30.8 9.0 27 361-387 64-96 (547)
245 PRK05920 aromatic acid decarbo 40.2 38 0.00082 30.0 3.8 40 1-43 2-41 (204)
246 PLN02948 phosphoribosylaminoim 39.9 4.7E+02 0.01 27.5 13.2 83 364-457 469-562 (577)
247 PRK02231 ppnK inorganic polyph 38.7 53 0.0011 30.7 4.7 33 353-387 37-73 (272)
248 TIGR02370 pyl_corrinoid methyl 38.6 63 0.0014 28.5 5.0 39 3-43 85-123 (197)
249 PLN02929 NADH kinase 38.0 36 0.00078 32.2 3.5 67 357-435 63-138 (301)
250 COG0552 FtsY Signal recognitio 38.0 1E+02 0.0023 29.5 6.4 40 4-45 141-180 (340)
251 PF00448 SRP54: SRP54-type pro 37.9 1.8E+02 0.0038 25.6 7.7 39 4-44 3-41 (196)
252 PRK05299 rpsB 30S ribosomal pr 37.7 43 0.00092 31.0 3.9 34 112-146 156-191 (258)
253 PRK11914 diacylglycerol kinase 37.6 2.1E+02 0.0046 27.0 8.9 25 364-388 68-96 (306)
254 PF02776 TPP_enzyme_N: Thiamin 37.4 89 0.0019 26.7 5.7 26 363-388 67-98 (172)
255 PF02606 LpxK: Tetraacyldisacc 37.4 2.4E+02 0.0051 27.2 9.0 34 6-41 41-74 (326)
256 PRK01185 ppnK inorganic polyph 37.4 63 0.0014 30.1 5.0 54 358-435 52-106 (271)
257 PF07355 GRDB: Glycine/sarcosi 37.3 62 0.0013 31.1 4.9 46 93-143 64-119 (349)
258 TIGR00345 arsA arsenite-activa 37.2 1.4E+02 0.003 28.1 7.3 24 20-45 3-26 (284)
259 PRK05562 precorrin-2 dehydroge 37.1 2.9E+02 0.0062 24.9 8.9 153 270-453 20-179 (223)
260 PTZ00254 40S ribosomal protein 36.9 32 0.0007 31.4 2.9 33 113-146 118-152 (249)
261 PF01975 SurE: Survival protei 36.8 70 0.0015 28.2 4.9 38 4-44 2-39 (196)
262 COG3340 PepE Peptidase E [Amin 36.7 3.1E+02 0.0068 24.5 9.1 47 265-312 22-68 (224)
263 COG2185 Sbm Methylmalonyl-CoA 36.5 57 0.0012 27.0 3.9 36 2-39 12-47 (143)
264 PF05225 HTH_psq: helix-turn-h 36.4 56 0.0012 20.9 3.2 25 420-447 1-26 (45)
265 PRK07313 phosphopantothenoylcy 36.4 47 0.001 28.9 3.7 39 3-44 2-40 (182)
266 PRK05973 replicative DNA helic 36.2 1.5E+02 0.0032 27.1 7.0 37 5-43 67-103 (237)
267 PRK04965 NADH:flavorubredoxin 36.2 36 0.00078 33.5 3.4 37 1-42 1-37 (377)
268 COG0299 PurN Folate-dependent 36.0 1.1E+02 0.0024 26.8 5.8 70 295-389 68-137 (200)
269 TIGR00730 conserved hypothetic 36.0 2.1E+02 0.0046 24.7 7.7 34 354-387 91-133 (178)
270 PRK14075 pnk inorganic polypho 35.8 73 0.0016 29.5 5.1 54 358-435 41-95 (256)
271 COG1763 MobB Molybdopterin-gua 35.5 35 0.00075 29.0 2.7 40 1-42 1-40 (161)
272 TIGR00347 bioD dethiobiotin sy 35.3 2.7E+02 0.0058 23.3 9.0 28 9-38 5-32 (166)
273 PRK03501 ppnK inorganic polyph 35.3 74 0.0016 29.5 5.0 54 359-435 40-98 (264)
274 CHL00067 rps2 ribosomal protei 35.1 56 0.0012 29.6 4.2 35 112-147 160-196 (230)
275 PRK10637 cysG siroheme synthas 34.8 3.6E+02 0.0077 27.4 10.3 152 270-454 7-168 (457)
276 PF05693 Glycogen_syn: Glycoge 34.8 93 0.002 32.5 6.0 94 351-450 462-565 (633)
277 TIGR01011 rpsB_bact ribosomal 34.7 55 0.0012 29.6 4.0 34 112-146 154-189 (225)
278 PF04127 DFP: DNA / pantothena 34.6 26 0.00057 30.5 1.9 21 19-41 32-52 (185)
279 COG1157 FliI Flagellar biosynt 34.5 4.8E+02 0.01 26.0 11.4 47 407-453 337-383 (441)
280 PRK07525 sulfoacetaldehyde ace 34.5 2.9E+02 0.0062 29.1 10.0 27 361-387 69-101 (588)
281 PRK08760 replicative DNA helic 34.4 1.3E+02 0.0028 30.7 7.1 36 5-42 232-268 (476)
282 PLN02935 Bifunctional NADH kin 34.3 76 0.0016 32.3 5.2 55 357-435 261-319 (508)
283 COG1797 CobB Cobyrinic acid a, 34.2 1.5E+02 0.0033 29.6 7.0 29 8-38 7-35 (451)
284 PF08323 Glyco_transf_5: Starc 34.2 55 0.0012 30.0 4.1 27 14-42 17-43 (245)
285 PRK14098 glycogen synthase; Pr 33.8 59 0.0013 33.3 4.6 38 3-42 6-49 (489)
286 TIGR01425 SRP54_euk signal rec 33.6 2.3E+02 0.0051 28.4 8.5 39 4-44 102-140 (429)
287 PRK13011 formyltetrahydrofolat 33.2 2.4E+02 0.0051 26.6 8.1 101 297-431 156-258 (286)
288 PRK08155 acetolactate synthase 33.2 1.8E+02 0.0038 30.5 8.1 26 362-387 78-109 (564)
289 PRK14092 2-amino-4-hydroxy-6-h 33.2 90 0.0019 26.6 4.8 31 275-305 5-35 (163)
290 cd01425 RPS2 Ribosomal protein 33.0 36 0.00077 29.9 2.5 34 112-146 126-161 (193)
291 TIGR01286 nifK nitrogenase mol 32.9 2.4E+02 0.0053 29.1 8.8 34 100-141 428-461 (515)
292 PRK13010 purU formyltetrahydro 32.9 3E+02 0.0065 26.0 8.7 101 297-431 160-262 (289)
293 PRK10427 putative PTS system f 32.3 1E+02 0.0022 24.5 4.7 40 1-42 1-43 (114)
294 PRK06456 acetolactate synthase 32.3 1.9E+02 0.0042 30.3 8.3 25 363-387 71-101 (572)
295 PF07801 DUF1647: Protein of u 32.0 1.4E+02 0.0031 24.7 5.6 63 3-72 60-122 (142)
296 cd01840 SGNH_hydrolase_yrhL_li 32.0 1.2E+02 0.0026 25.1 5.5 36 278-314 52-87 (150)
297 PF00282 Pyridoxal_deC: Pyrido 31.7 1.1E+02 0.0024 30.1 5.9 71 361-434 104-191 (373)
298 KOG2941 Beta-1,4-mannosyltrans 31.5 5E+02 0.011 25.3 12.1 59 3-72 13-71 (444)
299 COG2159 Predicted metal-depend 31.5 1.4E+02 0.003 28.3 6.3 112 244-376 97-210 (293)
300 PRK10117 trehalose-6-phosphate 31.3 2.4E+02 0.0051 28.8 8.2 106 350-476 340-455 (474)
301 PRK11519 tyrosine kinase; Prov 31.2 3.2E+02 0.0069 29.7 9.8 36 4-41 527-564 (719)
302 PRK05595 replicative DNA helic 31.0 39 0.00084 34.2 2.7 35 5-41 204-239 (444)
303 PRK01077 cobyrinic acid a,c-di 30.9 3.6E+02 0.0078 27.3 9.6 35 4-40 5-40 (451)
304 cd03412 CbiK_N Anaerobic cobal 30.9 95 0.0021 25.1 4.5 37 278-314 2-40 (127)
305 PRK08229 2-dehydropantoate 2-r 30.6 54 0.0012 31.7 3.6 33 1-40 1-33 (341)
306 PRK07574 formate dehydrogenase 30.5 4.1E+02 0.0088 26.3 9.6 69 278-374 194-262 (385)
307 PRK06270 homoserine dehydrogen 30.5 4.4E+02 0.0096 25.5 9.8 59 351-410 80-150 (341)
308 PRK10867 signal recognition pa 30.5 2.1E+02 0.0046 28.8 7.7 40 4-45 102-142 (433)
309 PRK05858 hypothetical protein; 30.5 3.1E+02 0.0067 28.5 9.4 25 363-387 70-100 (542)
310 TIGR03600 phage_DnaB phage rep 30.3 1.4E+02 0.003 29.9 6.5 36 5-42 197-233 (421)
311 PRK00048 dihydrodipicolinate r 29.9 4.4E+02 0.0096 24.2 9.8 58 351-412 53-116 (257)
312 PRK04940 hypothetical protein; 29.5 1.1E+02 0.0024 26.5 4.8 31 113-144 60-91 (180)
313 TIGR03457 sulphoacet_xsc sulfo 29.4 4.5E+02 0.0098 27.6 10.4 27 361-387 65-97 (579)
314 PRK09165 replicative DNA helic 29.4 2.8E+02 0.006 28.6 8.5 35 5-41 220-269 (497)
315 PRK14099 glycogen synthase; Pr 29.3 83 0.0018 32.2 4.8 83 345-436 354-449 (485)
316 COG2327 WcaK Polysaccharide py 29.2 2.8E+02 0.006 27.4 7.9 72 353-436 280-352 (385)
317 COG4088 Predicted nucleotide k 29.2 73 0.0016 28.4 3.6 34 4-39 3-36 (261)
318 TIGR00118 acolac_lg acetolacta 29.2 2.8E+02 0.006 29.0 8.8 27 361-387 65-97 (558)
319 PRK11269 glyoxylate carboligas 29.1 1.9E+02 0.0041 30.5 7.6 27 361-387 69-101 (591)
320 TIGR02852 spore_dpaB dipicolin 29.1 70 0.0015 27.9 3.6 38 3-42 1-38 (187)
321 COG2230 Cfa Cyclopropane fatty 29.1 60 0.0013 30.4 3.3 40 367-406 80-121 (283)
322 cd02069 methionine_synthase_B1 29.0 1.1E+02 0.0024 27.3 5.0 39 3-43 89-127 (213)
323 PF06180 CbiK: Cobalt chelatas 29.0 84 0.0018 29.2 4.3 39 278-316 2-43 (262)
324 PRK05636 replicative DNA helic 28.8 1.6E+02 0.0035 30.3 6.7 35 5-41 268-303 (505)
325 PRK13982 bifunctional SbtC-lik 28.8 1.2E+02 0.0026 30.8 5.7 37 3-41 257-305 (475)
326 PTZ00413 lipoate synthase; Pro 28.8 5.5E+02 0.012 25.4 9.8 128 289-432 176-320 (398)
327 PRK08199 thiamine pyrophosphat 28.7 3.8E+02 0.0083 27.9 9.7 27 361-387 72-104 (557)
328 PF00982 Glyco_transf_20: Glyc 28.6 1.8E+02 0.0039 29.7 6.9 100 354-474 368-474 (474)
329 COG1448 TyrB Aspartate/tyrosin 28.6 5.8E+02 0.013 25.1 10.1 29 439-468 313-341 (396)
330 PRK05748 replicative DNA helic 28.5 66 0.0014 32.6 3.9 37 5-43 206-243 (448)
331 PF02585 PIG-L: GlcNAc-PI de-N 28.5 1.5E+02 0.0032 23.7 5.3 21 96-120 87-107 (128)
332 TIGR01761 thiaz-red thiazoliny 28.5 5.1E+02 0.011 25.1 9.7 62 348-409 52-120 (343)
333 PF03641 Lysine_decarbox: Poss 28.4 1.2E+02 0.0025 24.8 4.6 34 355-388 49-92 (133)
334 PRK07586 hypothetical protein; 28.4 4.5E+02 0.0098 27.1 10.1 25 363-387 67-97 (514)
335 PF05728 UPF0227: Uncharacteri 28.1 1E+02 0.0022 27.0 4.4 44 99-145 47-91 (187)
336 cd00532 MGS-like MGS-like doma 27.9 2.8E+02 0.0062 21.6 6.7 22 15-39 10-31 (112)
337 TIGR01918 various_sel_PB selen 27.8 1E+02 0.0022 30.5 4.8 44 94-142 61-114 (431)
338 cd06533 Glyco_transf_WecG_TagA 27.7 3.9E+02 0.0084 22.8 11.1 80 219-316 54-134 (171)
339 TIGR01917 gly_red_sel_B glycin 27.7 1E+02 0.0022 30.5 4.7 44 94-142 61-114 (431)
340 PRK06029 3-octaprenyl-4-hydrox 27.6 87 0.0019 27.3 3.9 38 3-43 2-40 (185)
341 TIGR03446 mycothiol_Mca mycoth 27.6 1.5E+02 0.0033 27.9 5.8 19 97-119 109-127 (283)
342 TIGR00147 lipid kinase, YegS/R 27.6 2.7E+02 0.0058 26.1 7.7 25 364-388 61-91 (293)
343 PF00175 NAD_binding_1: Oxidor 27.5 90 0.0019 23.9 3.8 53 16-69 8-61 (109)
344 PF01210 NAD_Gly3P_dh_N: NAD-d 27.2 58 0.0013 27.4 2.8 30 5-41 2-31 (157)
345 PRK08305 spoVFB dipicolinate s 27.1 82 0.0018 27.7 3.7 38 3-42 6-43 (196)
346 cd01976 Nitrogenase_MoFe_alpha 27.1 80 0.0017 31.7 4.1 35 100-142 360-394 (421)
347 PRK14076 pnk inorganic polypho 27.1 94 0.002 32.6 4.8 54 358-435 348-405 (569)
348 KOG2941 Beta-1,4-mannosyltrans 27.0 6E+02 0.013 24.8 10.7 145 275-447 252-423 (444)
349 COG1691 NCAIR mutase (PurE)-re 26.8 2.4E+02 0.0053 25.4 6.4 116 279-432 119-250 (254)
350 cd01141 TroA_d Periplasmic bin 26.7 86 0.0019 27.0 3.9 38 99-142 60-99 (186)
351 CHL00076 chlB photochlorophyll 26.5 88 0.0019 32.3 4.4 35 100-142 365-399 (513)
352 TIGR00682 lpxK tetraacyldisacc 26.5 5.1E+02 0.011 24.7 9.2 33 7-41 35-67 (311)
353 cd02065 B12-binding_like B12 b 26.3 1.3E+02 0.0027 23.8 4.5 34 5-40 2-35 (125)
354 PRK10353 3-methyl-adenine DNA 26.3 3.4E+02 0.0073 23.7 7.2 52 385-436 22-84 (187)
355 PRK07449 2-succinyl-5-enolpyru 26.1 2.3E+02 0.0051 29.6 7.6 26 363-388 75-106 (568)
356 PF08452 DNAP_B_exo_N: DNA pol 26.0 39 0.00085 17.6 0.9 17 266-282 4-20 (22)
357 PRK06882 acetolactate synthase 26.0 3.7E+02 0.0079 28.2 9.0 27 361-387 68-100 (574)
358 TIGR00959 ffh signal recogniti 25.9 3E+02 0.0066 27.7 7.9 40 4-45 101-141 (428)
359 cd01981 Pchlide_reductase_B Pc 25.8 1E+02 0.0022 31.0 4.7 27 113-143 370-396 (430)
360 PRK13057 putative lipid kinase 25.8 1.5E+02 0.0033 27.7 5.6 30 357-388 49-82 (287)
361 PRK04761 ppnK inorganic polyph 25.8 62 0.0013 29.7 2.8 28 359-388 26-57 (246)
362 TIGR00379 cobB cobyrinic acid 25.7 4.6E+02 0.01 26.5 9.3 33 5-39 2-35 (449)
363 cd01124 KaiC KaiC is a circadi 25.7 1.3E+02 0.0028 25.7 4.8 37 5-43 2-38 (187)
364 cd03146 GAT1_Peptidase_E Type 25.4 4.8E+02 0.01 23.1 9.6 47 264-312 17-66 (212)
365 COG1737 RpiR Transcriptional r 25.4 3.4E+02 0.0075 25.4 7.9 90 267-393 123-217 (281)
366 PRK11199 tyrA bifunctional cho 25.1 4.7E+02 0.01 25.7 9.1 31 3-40 99-130 (374)
367 PRK15409 bifunctional glyoxyla 24.9 4.1E+02 0.0088 25.5 8.3 65 278-372 147-212 (323)
368 cd06210 MMO_FAD_NAD_binding Me 24.7 1.3E+02 0.0029 27.0 4.9 63 4-69 110-172 (236)
369 PRK02910 light-independent pro 24.5 1.1E+02 0.0023 31.8 4.6 26 113-142 362-387 (519)
370 PRK07773 replicative DNA helic 24.5 2.6E+02 0.0057 31.2 7.8 35 5-41 220-255 (886)
371 PRK08527 acetolactate synthase 24.5 4.1E+02 0.0088 27.8 9.0 27 361-387 67-99 (563)
372 COG0299 PurN Folate-dependent 24.3 1.3E+02 0.0029 26.4 4.3 42 101-143 14-58 (200)
373 PRK05713 hypothetical protein; 24.2 1.3E+02 0.0027 28.8 4.8 63 4-69 194-256 (312)
374 PRK01372 ddl D-alanine--D-alan 24.1 1E+02 0.0022 29.1 4.1 37 1-39 3-43 (304)
375 PRK06048 acetolactate synthase 23.9 3.2E+02 0.007 28.6 8.1 26 362-387 72-103 (561)
376 PRK13289 bifunctional nitric o 23.9 1.4E+02 0.003 29.5 5.2 63 4-69 263-325 (399)
377 PRK07609 CDP-6-deoxy-delta-3,4 23.8 1.6E+02 0.0034 28.5 5.4 63 4-69 206-268 (339)
378 PRK08266 hypothetical protein; 23.7 5.4E+02 0.012 26.7 9.7 26 362-387 70-101 (542)
379 PF10933 DUF2827: Protein of u 23.7 3.4E+02 0.0074 26.4 7.3 91 355-472 267-363 (364)
380 TIGR00696 wecB_tagA_cpsF bacte 23.7 3.8E+02 0.0081 23.1 7.1 83 216-316 53-135 (177)
381 COG2085 Predicted dinucleotide 23.7 1.3E+02 0.0028 26.8 4.2 33 4-43 3-35 (211)
382 PF10093 DUF2331: Uncharacteri 23.7 1.3E+02 0.0029 29.4 4.7 96 286-384 188-286 (374)
383 TIGR01278 DPOR_BchB light-inde 23.6 1.1E+02 0.0023 31.7 4.4 28 112-143 363-390 (511)
384 cd07025 Peptidase_S66 LD-Carbo 23.5 1.7E+02 0.0037 27.4 5.4 75 289-389 45-121 (282)
385 PRK05340 UDP-2,3-diacylglucosa 23.5 2E+02 0.0043 26.1 5.8 51 265-316 20-80 (241)
386 PRK12315 1-deoxy-D-xylulose-5- 23.4 5.4E+02 0.012 27.1 9.5 52 366-432 524-580 (581)
387 TIGR00655 PurU formyltetrahydr 23.3 3.8E+02 0.0083 25.1 7.6 102 296-431 150-253 (280)
388 PRK13059 putative lipid kinase 23.3 4.3E+02 0.0093 24.9 8.2 25 364-388 60-90 (295)
389 PRK08051 fre FMN reductase; Va 23.3 1E+02 0.0022 27.9 3.7 63 4-69 104-166 (232)
390 COG2861 Uncharacterized protei 23.1 3.4E+02 0.0073 24.8 6.7 40 97-140 136-178 (250)
391 PRK03708 ppnK inorganic polyph 22.5 74 0.0016 29.8 2.7 29 358-388 57-88 (277)
392 PF13167 GTP-bdg_N: GTP-bindin 22.4 1.7E+02 0.0036 22.4 4.1 36 99-139 47-84 (95)
393 PRK08617 acetolactate synthase 22.3 3.5E+02 0.0075 28.2 8.0 26 362-387 69-100 (552)
394 cd01452 VWA_26S_proteasome_sub 22.3 3.5E+02 0.0075 23.6 6.6 65 5-72 111-175 (187)
395 cd06211 phenol_2-monooxygenase 22.2 2.1E+02 0.0046 25.8 5.7 63 4-69 111-173 (238)
396 TIGR02655 circ_KaiC circadian 22.1 4.9E+02 0.011 26.6 8.8 37 5-43 266-302 (484)
397 PRK07524 hypothetical protein; 22.1 5.7E+02 0.012 26.5 9.5 26 362-387 66-97 (535)
398 PRK13982 bifunctional SbtC-lik 22.1 8.6E+02 0.019 24.9 12.2 140 279-433 73-247 (475)
399 TIGR00708 cobA cob(I)alamin ad 22.1 5.1E+02 0.011 22.3 10.7 33 4-38 7-39 (173)
400 PRK13055 putative lipid kinase 21.9 4.6E+02 0.01 25.2 8.2 25 364-388 63-93 (334)
401 PF03808 Glyco_tran_WecB: Glyc 21.9 5E+02 0.011 22.1 8.0 94 19-144 37-134 (172)
402 cd03784 GT1_Gtf_like This fami 21.8 4.4E+02 0.0095 25.8 8.4 36 279-316 3-38 (401)
403 PLN03139 formate dehydrogenase 21.8 6.7E+02 0.014 24.8 9.3 69 277-373 200-268 (386)
404 PF01372 Melittin: Melittin; 21.7 10 0.00022 20.5 -1.7 17 369-385 1-17 (26)
405 cd03466 Nitrogenase_NifN_2 Nit 21.7 1.3E+02 0.0028 30.3 4.5 34 100-141 363-396 (429)
406 PRK06487 glycerate dehydrogena 21.6 4.8E+02 0.01 24.9 8.1 60 277-371 149-208 (317)
407 PF00933 Glyco_hydro_3: Glycos 21.5 1.2E+02 0.0026 28.7 4.0 75 338-433 224-298 (299)
408 PRK08979 acetolactate synthase 21.5 3.2E+02 0.0069 28.7 7.5 122 296-435 8-153 (572)
409 TIGR02836 spore_IV_A stage IV 21.4 3.9E+02 0.0085 26.9 7.3 75 353-432 138-233 (492)
410 cd06187 O2ase_reductase_like T 21.4 2.4E+02 0.0053 24.9 5.9 64 3-69 99-162 (224)
411 COG0162 TyrS Tyrosyl-tRNA synt 21.3 91 0.002 30.9 3.2 25 14-41 49-73 (401)
412 PRK06457 pyruvate dehydrogenas 21.2 2.8E+02 0.006 28.9 7.0 28 358-387 64-97 (549)
413 PRK07709 fructose-bisphosphate 21.1 4.8E+02 0.01 24.6 7.7 32 285-316 21-52 (285)
414 PRK13337 putative lipid kinase 21.0 4.6E+02 0.0099 24.8 7.9 25 364-388 61-91 (304)
415 COG1484 DnaC DNA replication p 21.0 1.6E+02 0.0034 27.2 4.5 36 4-41 107-142 (254)
416 PF02775 TPP_enzyme_C: Thiamin 21.0 4.8E+02 0.01 21.5 9.2 63 364-433 79-144 (153)
417 PRK06732 phosphopantothenate-- 20.9 1.1E+02 0.0024 27.7 3.4 33 5-39 3-47 (229)
418 PRK02645 ppnK inorganic polyph 20.9 84 0.0018 29.9 2.8 29 358-388 57-89 (305)
419 PF07015 VirC1: VirC1 protein; 20.9 2.4E+02 0.0053 25.5 5.5 40 1-43 1-41 (231)
420 cd06188 NADH_quinone_reductase 20.9 1.4E+02 0.003 27.9 4.3 63 4-69 152-215 (283)
421 PHA00490 terminal protein 20.9 2.4E+02 0.0052 24.7 5.1 41 440-480 175-215 (266)
422 COG2987 HutU Urocanate hydrata 20.9 1.4E+02 0.0029 29.8 4.1 39 346-384 467-507 (561)
423 COG0041 PurE Phosphoribosylcar 20.5 5.2E+02 0.011 21.7 12.1 138 279-457 4-154 (162)
424 PRK07282 acetolactate synthase 20.5 4.5E+02 0.0098 27.5 8.4 27 361-387 74-106 (566)
425 cd06212 monooxygenase_like The 20.5 1.9E+02 0.004 26.0 4.9 63 4-69 105-167 (232)
426 PRK06932 glycerate dehydrogena 20.4 5.3E+02 0.011 24.6 8.1 60 278-371 149-208 (314)
427 PLN02939 transferase, transfer 20.4 1.7E+02 0.0036 32.7 5.1 39 3-43 482-526 (977)
428 COG0143 MetG Methionyl-tRNA sy 20.3 1.8E+02 0.0038 30.4 5.1 41 3-45 5-55 (558)
429 PRK14571 D-alanyl-alanine synt 20.3 3.2E+02 0.007 25.7 6.7 34 280-313 3-39 (299)
430 PTZ00119 40S ribosomal protein 20.2 2.7E+02 0.0059 25.8 5.5 78 390-474 60-140 (302)
431 PRK06466 acetolactate synthase 20.1 5.8E+02 0.013 26.7 9.1 27 361-387 68-100 (574)
432 cd01980 Chlide_reductase_Y Chl 20.1 1.4E+02 0.003 29.9 4.2 26 113-142 350-375 (416)
433 PRK08410 2-hydroxyacid dehydro 20.1 4.8E+02 0.01 24.9 7.8 99 277-429 146-247 (311)
No 1
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-70 Score=548.62 Aligned_cols=471 Identities=40% Similarity=0.746 Sum_probs=360.0
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhCCCC--eEEEEEeCCCCCCC--CCCcchhhhhccCCCCCeeEEEcCCCCCC
Q 042987 1 MK-DTIVFYTSPGRGHLNSMVELGKLILTYHPC--FSIDIIIPTAPFVS--SAGTDDYIASVSATAPSVTFHQLPPPVSG 75 (481)
Q Consensus 1 m~-~~il~~~~p~~GHv~P~l~La~~L~~~G~~--h~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 75 (481)
|+ .||+++|+|++||++|++.||+.|+.+|++ +.|||+++....+. . ..+..+.+.....+++.|+.+|+..
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESAS-EVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhH-HHHHHHhhcccCCCCEEEEECCCCC--
Confidence 54 499999999999999999999999998632 78999987765431 1 1222221111112269999998652
Q ss_pred CCCCCCCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhh
Q 042987 76 LPDTLRSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (481)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~ 155 (481)
++.+.+ +....+........+.++++++... .+++|||+|.+++|+..+| +++|||++.|++++++.++.+.+.
T Consensus 78 ~p~~~e---~~~~~~~~~~~~~~~~l~~~L~~l~--~pv~cIV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 78 PPTDAA---GVEEFISRYIQLHAPHVRAAIAGLS--CPVAALVVDFFCTPLLDVA-RELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred CCCccc---cHHHHHHHHHHhhhHHHHHHHHhcC--CCceEEEECCcchhHHHHH-HHhCCCEEEEECccHHHHHHHhhh
Confidence 333322 2222233344556667777776651 2469999999999999999 999999999999999998888877
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHccc
Q 042987 156 PTLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQ 235 (481)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 235 (481)
+........+.... ...+.+||++.++..+++..+..........+....+...+++++++|||.+||+.++..+....
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 230 (480)
T PLN00164 152 PALDEEVAVEFEEM-EGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGR 230 (480)
T ss_pred hhhcccccCccccc-CcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcc
Confidence 65432211111111 12345899988999999976654433334444555566678899999999999999999887653
Q ss_pred CCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeC
Q 042987 236 CTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 236 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (481)
..++...++++.|||++...........+++|.+|||+++++++|||||||+...+.+++.+++.+|+.++++|||+++.
T Consensus 231 ~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~ 310 (480)
T PLN00164 231 CTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRG 310 (480)
T ss_pred ccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 22332336899999998432111111345789999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcc--ccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchh
Q 042987 316 PAPDSIE--NRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQK 393 (481)
Q Consensus 316 ~~~~~~~--~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~ 393 (481)
+...+.. .+.+....+|++|.++++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 311 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (480)
T PLN00164 311 PPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQH 390 (480)
T ss_pred CcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccch
Confidence 4210000 00112235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042987 394 MIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (481)
Q Consensus 394 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 471 (481)
.||+++++.+|+|+.+...+++++.+++++|.++|+++|.|+ +++++|++|+++++++++++++|||+++++++|+++
T Consensus 391 ~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~ 470 (480)
T PLN00164 391 LNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLARE 470 (480)
T ss_pred hHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999988778999999864321123479999999999999875 378999999999999999999999999999999999
Q ss_pred HHhccCCCCC
Q 042987 472 FKRGCIAPFG 481 (481)
Q Consensus 472 ~~~~~~~~~~ 481 (481)
+++..+++++
T Consensus 471 ~~~~~~~~~~ 480 (480)
T PLN00164 471 IRHGAVAPTR 480 (480)
T ss_pred HHhccCCCCC
Confidence 9999998875
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.8e-69 Score=533.07 Aligned_cols=450 Identities=32% Similarity=0.607 Sum_probs=348.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCC-CCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVS-GLPDTL 80 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~l~~~~ 80 (481)
.||+++|+|++||++|++.||+.|+ ++| ++|||+++...... .. ... ...+++.++.+|+++. +++...
T Consensus 6 pHVvl~P~paqGHi~P~l~LAk~La~~~g--~~vT~v~t~~n~~~---~~---~~~-~~~~~i~~~~lp~p~~~glp~~~ 76 (481)
T PLN02992 6 PHAAMFSSPGMGHVIPVIELGKRLSANHG--FHVTVFVLETDAAS---AQ---SKF-LNSTGVDIVGLPSPDISGLVDPS 76 (481)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCC--cEEEEEeCCCchhh---hh---hcc-ccCCCceEEECCCccccCCCCCC
Confidence 5999999999999999999999998 789 99999987643221 10 111 0123689999986432 143111
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccccc
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 160 (481)
.+....+......+.+.+++++++.. .+|+|||+|.+++|+..+| +++|||++.|++++++.++.+.+.|.+..
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~p~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 77 ---AHVVTKIGVIMREAVPTLRSKIAEMH--QKPTALIVDLFGTDALCLG-GEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred ---ccHHHHHHHHHHHhHHHHHHHHHhcC--CCCeEEEECCcchhHHHHH-HHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 12223344445556678888887642 2789999999999999999 99999999999999988777766654322
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCC
Q 042987 161 NTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGE 240 (481)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 240 (481)
....+... ......+||+++++..+++..+.......+..+.+......+++++++|||.+||+.++..+.+.... ++
T Consensus 151 ~~~~~~~~-~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~-~~ 228 (481)
T PLN02992 151 DIKEEHTV-QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL-GR 228 (481)
T ss_pred cccccccc-CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc-cc
Confidence 11111100 11234588998888888886554444444566666667778899999999999999999888653111 11
Q ss_pred C-CCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042987 241 T-SPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPD 319 (481)
Q Consensus 241 ~-~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 319 (481)
. -++++.|||++..... . ..+++|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.+...
T Consensus 229 ~~~~~v~~VGPl~~~~~~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~ 305 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQS-S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG 305 (481)
T ss_pred ccCCceEEecCccCCcCC-C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 1 1579999999864221 1 3356799999999989999999999999999999999999999999999999743110
Q ss_pred Cc---c----cc---ccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc
Q 042987 320 SI---E----NR---SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 320 ~~---~----~~---~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~ 389 (481)
+. . .+ ......+|++|.+|++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~ 385 (481)
T PLN02992 306 SACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF 385 (481)
T ss_pred ccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc
Confidence 00 0 00 01123589999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHh--cCCChHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMR--DGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~ 467 (481)
+||+.||+++++++|+|+.++.. ++.++.++|.++|+++|.|+++++||++++++++.+++++. +||||+.+++.
T Consensus 386 ~DQ~~na~~~~~~~g~gv~~~~~---~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~ 462 (481)
T PLN02992 386 AEQNMNAALLSDELGIAVRSDDP---KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCR 462 (481)
T ss_pred chhHHHHHHHHHHhCeeEEecCC---CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999997688999999752 12389999999999999887788899999999999999994 69999999999
Q ss_pred HHHHHHhc
Q 042987 468 LVESFKRG 475 (481)
Q Consensus 468 ~~~~~~~~ 475 (481)
|++.+.+.
T Consensus 463 ~v~~~~~~ 470 (481)
T PLN02992 463 VTKECQRF 470 (481)
T ss_pred HHHHHHHH
Confidence 99998763
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-68 Score=528.91 Aligned_cols=437 Identities=27% Similarity=0.476 Sum_probs=337.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCC-CC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDT-LR 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~-~~ 81 (481)
+||+++|+|++||++||+.||+.|+.+| +.|||+++....... . ...+++.|..+|+. +|.+ .+
T Consensus 8 ~HVvlvPfpaqGHi~P~l~LAk~La~~G--~~VT~v~T~~n~~~~-----~-----~~~~~i~~~~ip~g---lp~~~~~ 72 (451)
T PLN02410 8 RRVVLVPVPAQGHISPMMQLAKTLHLKG--FSITIAQTKFNYFSP-----S-----DDFTDFQFVTIPES---LPESDFK 72 (451)
T ss_pred CEEEEECCCccccHHHHHHHHHHHHcCC--CEEEEEeCccccccc-----c-----cCCCCeEEEeCCCC---CCccccc
Confidence 4999999999999999999999999999 999999876432110 0 11236899998853 6653 22
Q ss_pred CCCCchHHHHHHHHhhhHHHHHHHHHhhc--cCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccc
Q 042987 82 SPADFPALVYELGELNNPKLHETLITISK--RSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 159 (481)
. ......+....+.+...++++++++.. ..+++|||+|.+++|+..+| +++|||++.|++++++.++.+.+++.+.
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA-~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 73 N-LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAA-KEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred c-cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHH-HHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 2 122232223333566778888877532 23579999999999999999 9999999999999998887776654432
Q ss_pred cccC-cccccc-CcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCC
Q 042987 160 KNTT-KSFREL-GSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 160 ~~~~-~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 237 (481)
.... .+.... ......+|++++++..+++.............+... ....+++++++|||.+||+.++.++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-- 227 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQL-- 227 (451)
T ss_pred hccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhcc--
Confidence 2111 011110 112335888888888888865433222233333222 23567889999999999999999987643
Q ss_pred CCCCCCCeEEeCcccCCCCCCC-CCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCC
Q 042987 238 PGETSPPLYCIGPVVGRGNGEN-RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 238 ~~~~~~~v~~vGpl~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 316 (481)
+ +++++|||++....... .+....+|.+|||++++++||||||||....+.+++.+++.+|+.++.+|||+++.+
T Consensus 228 -~---~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 228 -Q---IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred -C---CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 2 58999999975432111 112345689999999999999999999999999999999999999999999999843
Q ss_pred CCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHH
Q 042987 317 APDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIR 396 (481)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na 396 (481)
..++ .+....+|++|.+|++.+++ +.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 304 ~~~~----~~~~~~lp~~f~er~~~~g~-v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 304 SVRG----SEWIESLPKEFSKIISGRGY-IVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred cccc----cchhhcCChhHHHhccCCeE-EEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 1110 01122489999999986664 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042987 397 AVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 397 ~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (481)
+++++.+|+|+.+. .. +++++|+++|+++|.++++++||++|+++++++++++.+|||++.++++|++.+..
T Consensus 379 ~~~~~~~~~G~~~~-~~-----~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 379 RYLECVWKIGIQVE-GD-----LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHhCeeEEeC-Cc-----ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99988889999997 45 89999999999999887788999999999999999999999999999999998864
No 4
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-68 Score=525.59 Aligned_cols=456 Identities=31% Similarity=0.573 Sum_probs=348.5
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCC-CC-
Q 042987 1 MK-DTIVFYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVS-GL- 76 (481)
Q Consensus 1 m~-~~il~~~~p~~GHv~P~l~La~~L~~~-G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~l- 76 (481)
|. +||+++|+|++||++|++.||+.|+.+ | ..|||+++....+.. .-+..+.+.. ..+++.|+.+|+++. ++
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~-~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~ 76 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSP-TETEAIHAAA-ARTTCQITEIPSVDVDNLV 76 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhh-cccccccccc-CCCceEEEECCCCccccCC
Confidence 54 499999999999999999999999987 8 999999876543321 0011111110 113699999986532 12
Q ss_pred CCCCCCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCc-eEEEeccchhhHhhHhhh
Q 042987 77 PDTLRSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIP-TYYYFTTAGSVLAANLYL 155 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP-~v~~~~~~~~~~~~~~~~ 155 (481)
+.+ .+....+...++.+.+.++++++++.. +++|||+|.+++|+..+| +++||| .+.+++++++..+.+.++
T Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~ciV~D~f~~w~~~vA-~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 77 EPD----ATIFTKMVVKMRAMKPAVRDAVKSMKR--KPTVMIVDFFGTALMSIA-DDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred CCC----ccHHHHHHHHHHhchHHHHHHHHhcCC--CCeEEEEcCCcHHHHHHH-HHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 111 134445566666777888888887632 689999999999999999 999999 578888888777777776
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHccc
Q 042987 156 PTLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQ 235 (481)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 235 (481)
|............. ...+.+||+++++..+++..+.......+..+.+..+...+++++++|||.+||+.++..+.+..
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 150 PVLDTVVEGEYVDI-KEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hhhhcccccccCCC-CCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 65322111111111 12345899999999999976654433334455566666788999999999999999998887642
Q ss_pred CCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeC
Q 042987 236 CTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 236 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (481)
.+....-++++.|||++...... +.+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+++.
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~~---~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVHV---EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred ccccccCCceEEecCCCCCcccc---cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 11000014699999998532111 234579999999999999999999999999999999999999999999999975
Q ss_pred CCCCCcc--cc-ccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccch
Q 042987 316 PAPDSIE--NR-SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 316 ~~~~~~~--~~-~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ 392 (481)
+...... .+ .+....+|++|.+|++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 3210000 00 01233689999999999999888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042987 393 KMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDS--EKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 470 (481)
+.||+++++.+|+|+.+.... .++.+++++|+++|+++|.+ ++++++|+||+++++++++++++||||++++++|++
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~-~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELP-SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred HHHHHHHHHHhCeeEEecccc-cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999988999999996211 12358999999999999963 558899999999999999999999999999999998
Q ss_pred HH
Q 042987 471 SF 472 (481)
Q Consensus 471 ~~ 472 (481)
.+
T Consensus 465 ~~ 466 (470)
T PLN03015 465 RC 466 (470)
T ss_pred hc
Confidence 76
No 5
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.4e-69 Score=528.04 Aligned_cols=447 Identities=47% Similarity=0.857 Sum_probs=338.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLR 81 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (481)
+.||+++|+|++||++||+.||+.|+.+|+.+.||+.+.....+.. .....++......++++|+.+|+... .+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPE-STATYISSVSSSFPSITFHHLPAVTP-YSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhh-hhhhhhccccCCCCCeEEEEcCCCCC-CCCccc
Confidence 4699999999999999999999999999743356665444443221 11111112112234799999987632 222222
Q ss_pred CCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccccc
Q 042987 82 SPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (481)
...+....+..........++++++++....+++|||+|.+++|+..+| +++|||++.|++++++.++.+.++|.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA-~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDIT-ADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHH-HHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 2122333444555566777788887763223459999999999999999 999999999999999998888877653221
Q ss_pred cCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCCC
Q 042987 162 TTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGET 241 (481)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 241 (481)
...... .......+||++.++..+++..+.......++.+.+......+++++++|||.+||+.++..+.....
T Consensus 160 ~~~~~~-~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~----- 233 (451)
T PLN03004 160 TPGKNL-KDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC----- 233 (451)
T ss_pred cccccc-ccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC-----
Confidence 110000 01123458999989999999876554444455556666677788899999999999999998865320
Q ss_pred CCCeEEeCcccCCCCCCCC-CCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 042987 242 SPPLYCIGPVVGRGNGENR-GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDS 320 (481)
Q Consensus 242 ~~~v~~vGpl~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 320 (481)
.++++.|||++........ ...+.+|.+|||+++++++|||||||+...+.+++++++.+|+.++.+|||+++.+....
T Consensus 234 ~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~ 313 (451)
T PLN03004 234 FRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELE 313 (451)
T ss_pred CCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 1579999999853221110 012356999999999999999999999999999999999999999999999998531100
Q ss_pred ccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHH
Q 042987 321 IENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVV 400 (481)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~ 400 (481)
.+ .......+|++|++|++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 314 ~~-~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~ 392 (451)
T PLN03004 314 KT-ELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV 392 (451)
T ss_pred cc-ccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 00 00112248999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHH
Q 042987 401 EEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRV 463 (481)
Q Consensus 401 ~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 463 (481)
+++|+|+.++..+ ++.+++++|+++|+++|.|++ ||++++++++..++++++||||++
T Consensus 393 ~~~g~g~~l~~~~--~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 393 DEIKIAISMNESE--TGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHhCceEEecCCc--CCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 7789999997532 224799999999999998876 999999999999999999999853
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.5e-68 Score=526.79 Aligned_cols=451 Identities=24% Similarity=0.433 Sum_probs=344.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcch---hhhh--ccCCCCCeeEEEcCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDD---YIAS--VSATAPSVTFHQLPPPVSGLP 77 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~f~~~~~~~~~l~ 77 (481)
.||+++|+|++||++|++.||+.|+.+| ..|||+++...... .+. ...+ .......+.|..+++ + +|
T Consensus 8 ~HVv~~PfpaqGHi~Pml~lA~~La~~G--~~vT~v~T~~~~~~---~~~a~~~~~~~~~~~~~~~i~~~~~pd--g-lp 79 (480)
T PLN02555 8 VHVMLVSFPGQGHVNPLLRLGKLLASKG--LLVTFVTTESWGKK---MRQANKIQDGVLKPVGDGFIRFEFFED--G-WA 79 (480)
T ss_pred CEEEEECCcccccHHHHHHHHHHHHhCC--CeEEEEeccchhhh---hhccccccccccccCCCCeEEEeeCCC--C-CC
Confidence 5999999999999999999999999999 99999988753332 111 0010 000112356665653 3 66
Q ss_pred CCCCCCCCchHHHHHHHHhhhHHHHHHHHHhhccCC-ccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhc
Q 042987 78 DTLRSPADFPALVYELGELNNPKLHETLITISKRSN-LKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (481)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p 156 (481)
.+.+...+....+....+...+.++++++.+..+.+ ++|||+|.+++|+..+| +++|||++.|++++++.++.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA-~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 80 EDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVA-EELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHH-HHcCCCeEEeecccHHHHHHHHHHh
Confidence 554432333322333333567778888876532224 49999999999999999 9999999999999999888887764
Q ss_pred ccccccCccccccCcccccCCCCCCCCcccCCCcccC--CCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcc
Q 042987 157 TLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHD--REGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEG 234 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 234 (481)
....... .. ........+||+|.++..+++.++.. .....++.+.+..+...+++++++|||.+||+.++..+...
T Consensus 159 ~~~~~~~-~~-~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 159 HGLVPFP-TE-TEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred hcCCCcc-cc-cCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 3210000 00 00112345899998999999986642 12344555666667778889999999999999998888653
Q ss_pred cCCCCCCCCCeEEeCcccCCCCC--C---C-CCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCe
Q 042987 235 QCTPGETSPPLYCIGPVVGRGNG--E---N-RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK 308 (481)
Q Consensus 235 ~~~~~~~~~~v~~vGpl~~~~~~--~---~-~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 308 (481)
. | ++.|||++..... . . .+..+++|.+||++++++++|||||||+...+.+++.+++.+|+.++++
T Consensus 237 ~-------~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 237 C-------P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred C-------C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 2 5 9999999753211 1 0 0234578999999999889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc
Q 042987 309 FLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~ 388 (481)
|||+++...... ......+|+++.++.+.+ +.+.+|+||.+||.|+++++|||||||||++||+++|||||++|+
T Consensus 309 flW~~~~~~~~~----~~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~ 383 (480)
T PLN02555 309 FLWVMRPPHKDS----GVEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQ 383 (480)
T ss_pred EEEEEecCcccc----cchhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCC
Confidence 999997421000 001235788898887644 566699999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 389 YAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 389 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
++||+.||+++++.||+|+.+....+..+.+++++|.++|+++|.+++++++|+||++|++++++++++|||++.++++|
T Consensus 384 ~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~ 463 (480)
T PLN02555 384 WGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEF 463 (480)
T ss_pred ccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999988999999953111123489999999999999887789999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 042987 469 VESFKRGCI 477 (481)
Q Consensus 469 ~~~~~~~~~ 477 (481)
++++.+.++
T Consensus 464 v~~i~~~~~ 472 (480)
T PLN02555 464 VDKLVRKSV 472 (480)
T ss_pred HHHHHhccc
Confidence 999998754
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.4e-68 Score=528.04 Aligned_cols=447 Identities=27% Similarity=0.490 Sum_probs=343.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCC-CCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVS-GLPDTLR 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~l~~~~~ 81 (481)
+||+++|||++||++||+.||+.|+.+| +.|||+++...... +.+.....+++++..++.+.. ++|++.+
T Consensus 10 ~HVvl~PfpaqGHi~P~l~LAk~La~~G--~~VTfv~T~~n~~~-------~~~~~~~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 10 THVLVFPFPAQGHMIPLLDLTHRLALRG--LTITVLVTPKNLPF-------LNPLLSKHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCCcHHH-------HhhhcccCCCeeEEeCCCCCcCCCCCCCc
Confidence 5999999999999999999999999999 99999987754321 111111234688888775431 2776665
Q ss_pred CCCCch----HHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPADFP----ALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~ 157 (481)
+..+.. ..+........+.+.+++++. ..+++|||+|.+++|+..+| +++|||++.||+++++.++.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~p~cvI~D~f~~Wa~dVA-~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSH--PSPPVAIISDMFLGWTQNLA-CQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhC--CCCCeEEEEcCchHhHHHHH-HHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 443322 223344444556666666653 13679999999999999999 99999999999999999888887653
Q ss_pred cccccCccccccCc--ccccCCCCCCCCcccCCCcccCC--CchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHc
Q 042987 158 LHKNTTKSFRELGS--TLLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLE 233 (481)
Q Consensus 158 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 233 (481)
...... ....... ....+||++.++..+++..+... .....+.+.+.......++++++|||.+||+.++..+..
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 158 EMPTKI-NPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc-cccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 221100 0000000 11247888889999998765422 233344444555555667889999999999999998876
Q ss_pred ccCCCCCCCCCeEEeCcccCCCCCC----C----CCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhC
Q 042987 234 GQCTPGETSPPLYCIGPVVGRGNGE----N----RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS 305 (481)
Q Consensus 234 ~~~~~~~~~~~v~~vGpl~~~~~~~----~----~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
.+ + .++++.|||++...... . .+..+++|.+||+.++++++|||||||+...+.+++.+++.+|+.+
T Consensus 237 ~~---~--~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 237 EL---G--HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred hc---C--CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 42 1 15799999997533110 0 0112467999999999899999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEe
Q 042987 306 GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~ 385 (481)
+.+|||+++.+... ......+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 312 ~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 312 GVHFIWCVKEPVNE-----ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLA 386 (477)
T ss_pred CCcEEEEECCCccc-----ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEe
Confidence 99999999853110 0112358999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 042987 386 WPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD-SEKGRAVKERAVAMKEAAAAAMRDGGSSRVA 464 (481)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 464 (481)
+|+++||+.||+++++.+|+|+.+.... .+.++.+++.++|+++|. ++ +||+||+++++.+++++.+|||++.+
T Consensus 387 ~P~~~DQ~~na~~v~~~~gvG~~~~~~~--~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a~~Av~~gGSS~~~ 461 (477)
T PLN02863 387 WPMAADQFVNASLLVDELKVAVRVCEGA--DTVPDSDELARVFMESVSENQ---VERERAKELRRAALDAIKERGSSVKD 461 (477)
T ss_pred CCccccchhhHHHHHHhhceeEEeccCC--CCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 9999999999999888899999996422 234689999999999994 44 59999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 042987 465 LDNLVESFKRGCI 477 (481)
Q Consensus 465 ~~~~~~~~~~~~~ 477 (481)
+++|++.+.+.+.
T Consensus 462 l~~~v~~i~~~~~ 474 (477)
T PLN02863 462 LDGFVKHVVELGL 474 (477)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987653
No 8
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.3e-68 Score=521.22 Aligned_cols=425 Identities=25% Similarity=0.468 Sum_probs=337.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCC-CC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDT-LR 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~-~~ 81 (481)
.||+++|+|++||++|++.||+.|+.+| +.|||+++....+.. .. ...+++.|+.+++ + +|.+ .+
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G--~~vT~v~t~~~~~~~---~~------~~~~~i~~~~ipd--g-lp~~~~~ 71 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKG--FKTTHTLTTFIFNTI---HL------DPSSPISIATISD--G-YDQGGFS 71 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCC--CEEEEEECCchhhhc---cc------CCCCCEEEEEcCC--C-CCCcccc
Confidence 4999999999999999999999999999 999999876543321 10 1124699999985 3 7753 23
Q ss_pred CCCCchHHHHHHHHhhhHHHHHHHHHhhccCCc-cEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccccc
Q 042987 82 SPADFPALVYELGELNNPKLHETLITISKRSNL-KAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~p-D~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 160 (481)
...+....+....+...+.++++++....+.+| +|||+|.+++|+..+| +++|||++.|++++++....+++ +...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~~~~a~~~~~~~~-~~~~- 148 (449)
T PLN02173 72 SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLA-REFGLAAAPFFTQSCAVNYINYL-SYIN- 148 (449)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHH-HHhCCCEEEEechHHHHHHHHHh-HHhc-
Confidence 322333323333335677888888775332245 9999999999999999 99999999999998877665543 2111
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCC--CchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCC
Q 042987 161 NTTKSFRELGSTLLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 238 (481)
. ......+|++|+++..+++.++... ....+..+.+......+++++++|||.+||+.++..+...
T Consensus 149 ~--------~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---- 216 (449)
T PLN02173 149 N--------GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---- 216 (449)
T ss_pred c--------CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----
Confidence 1 0122447888888899998876532 2234555666667778899999999999999998887542
Q ss_pred CCCCCCeEEeCcccCCC-------C-CCC---CC--CCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhC
Q 042987 239 GETSPPLYCIGPVVGRG-------N-GEN---RG--RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS 305 (481)
Q Consensus 239 ~~~~~~v~~vGpl~~~~-------~-~~~---~~--~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
++++.|||++... . ... .+ ..+++|.+||+.++++++|||||||+...+.+++.+++.+| .
T Consensus 217 ----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 217 ----CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred ----CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 4799999997421 0 000 01 12346999999999999999999999999999999999999 6
Q ss_pred CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEe
Q 042987 306 GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~ 385 (481)
+.+|+|+++.+ ....+|+++.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 291 ~~~flWvvr~~----------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 291 NFSYLWVVRAS----------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred CCCEEEEEecc----------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 78899999753 12347889999987788888899999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 042987 386 WPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVAL 465 (481)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (481)
+|+++||+.||+++++.||+|+.+...+ .++.+++++|+++|+++|.|++++++|++|+++++++++++++|||++.++
T Consensus 361 ~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~-~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l 439 (449)
T PLN02173 361 MPQWTDQPMNAKYIQDVWKVGVRVKAEK-ESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDINI 439 (449)
T ss_pred cCchhcchHHHHHHHHHhCceEEEeecc-cCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999998889999987533 123479999999999999887788999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042987 466 DNLVESFK 473 (481)
Q Consensus 466 ~~~~~~~~ 473 (481)
++|++++.
T Consensus 440 ~~~v~~~~ 447 (449)
T PLN02173 440 NTFVSKIQ 447 (449)
T ss_pred HHHHHHhc
Confidence 99999874
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=8.3e-68 Score=521.69 Aligned_cols=452 Identities=33% Similarity=0.633 Sum_probs=339.2
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCC
Q 042987 1 MKD-TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDT 79 (481)
Q Consensus 1 m~~-~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (481)
|++ ||+++|+|++||++|++.||+.|+.+|+...|||+++....+. ..+..+.+.....++++|+.+|+.+. .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQS--HLDTYVKSIASSQPFVRFIDVPELEE-KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcch--hhHHhhhhccCCCCCeEEEEeCCCCC-CCcc
Confidence 655 9999999999999999999999999874478999987765432 12222322212234799999995432 2221
Q ss_pred CCCCCCchHHHHHHHHhhhH----HHHHHHHHhhccCCc-cEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhh
Q 042987 80 LRSPADFPALVYELGELNNP----KLHETLITISKRSNL-KAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLY 154 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~p-D~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~ 154 (481)
. ...+....+...++.... .+++++++...+.+| +|||+|.+++|+..+| +++|||++.|++++++.++.+.+
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA-~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 78 G-GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVA-KDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred c-cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHH-HHhCCCEEEEECccHHHHHHHHH
Confidence 1 112344445455554433 344444432111134 8999999999999999 99999999999999988888777
Q ss_pred hcccccccC-ccccccCcccccCCCC-CCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHH
Q 042987 155 LPTLHKNTT-KSFRELGSTLLNFPGF-PPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAML 232 (481)
Q Consensus 155 ~p~~~~~~~-~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 232 (481)
.+....... ...... ...+.+||+ ++++..+++.++.... . +..+.+......+.+++++|||.+||+.++..+.
T Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 156 LADRHSKDTSVFVRNS-EEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred hhhccccccccCcCCC-CCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 765432110 000011 123458998 6799999998664322 1 4444555556778899999999999999888875
Q ss_pred cccCCCCCCCCCeEEeCcccCCCCCCCC---CCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeE
Q 042987 233 EGQCTPGETSPPLYCIGPVVGRGNGENR---GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 233 ~~~~~~~~~~~~v~~vGpl~~~~~~~~~---~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
+.. ..|+++.|||++........ ...+++|.+|||+++++++|||||||....+.+++++++.+|+.++++|
T Consensus 233 ~~~-----~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 233 DEQ-----NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred hcc-----CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 410 12789999999864321100 0123679999999998999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc
Q 042987 310 LWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~ 389 (481)
||+++.+.. .....+|++|.++.+.++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 308 lW~~r~~~~-------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 308 LWSLRTEEV-------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred EEEEeCCCc-------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 999985311 113358999999887665 555999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhceeeEeecCC--ccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSE--EKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
+||+.||+++++.+|+|+.+.... ..++.+++++|+++|+++|.+ ++++||+||+++++.+++++++||||++++++
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~ 458 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEK 458 (468)
T ss_pred ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999878789999874211 012246999999999999973 35569999999999999999999999999999
Q ss_pred HHHHHHh
Q 042987 468 LVESFKR 474 (481)
Q Consensus 468 ~~~~~~~ 474 (481)
|++++..
T Consensus 459 ~v~~~~~ 465 (468)
T PLN02207 459 FIHDVIG 465 (468)
T ss_pred HHHHHHh
Confidence 9999874
No 10
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.6e-67 Score=517.85 Aligned_cols=449 Identities=29% Similarity=0.501 Sum_probs=335.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCC--CCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPV--SGLPDTL 80 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~l~~~~ 80 (481)
.||+++|+|++||++|++.||+.|+.+| +.|||+++..... .....+.........++|+.++.+. .++|.+.
T Consensus 9 ~Hvv~vPfpaqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~---~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 9 LHFVLIPLMAQGHMIPMIDMARLLAERG--VIVSLVTTPQNAS---RFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred CEEEEECCCCcchHHHHHHHHHHHHhCC--CeEEEEECCCcHH---HHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 4999999999999999999999999999 9999998764322 1222221110111248999998652 1277654
Q ss_pred CCCCC-----chHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhh
Q 042987 81 RSPAD-----FPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (481)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~ 155 (481)
+...+ ....+...+....+.++++++.. ..+++|||+|.+++|+..+| +++|||++.|++++++....+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~--~~pp~cIV~D~f~~Wa~dVA-~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA--KPPPSCIISDKCLSWTSKTA-QRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc--CCCCcEEEECCccHHHHHHH-HHhCCCeEEEecchHHHHHHHHHH
Confidence 43222 22223333334556666666543 13689999999999999999 999999999999998877665433
Q ss_pred cccccccCccccccCcccccCCCCCC---CCcccCCCcccCCCchHHHHHHHHHhh-hcccceEEEcCchhhhHHHHHHH
Q 042987 156 PTLHKNTTKSFRELGSTLLNFPGFPP---FPARDMALPMHDREGKVYKGLVDTGIQ-MAKSAGVIVNTFELLEERAIKAM 231 (481)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~ 231 (481)
....... .... ...++.+|++++ ++..+++..+.... ....+...... ...++++++|||.+||+.++..+
T Consensus 161 ~~~~~~~--~~~~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 161 RLHNAHL--SVSS-DSEPFVVPGMPQSIEITRAQLPGAFVSLP--DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred HHhcccc--cCCC-CCceeecCCCCccccccHHHCChhhcCcc--cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 1111111 0111 122345788763 67777776543221 12333333332 34567999999999999999888
Q ss_pred HcccCCCCCCCCCeEEeCcccCCCCC-------CCCC-CCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHH
Q 042987 232 LEGQCTPGETSPPLYCIGPVVGRGNG-------ENRG-RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLE 303 (481)
Q Consensus 232 ~~~~~~~~~~~~~v~~vGpl~~~~~~-------~~~~-~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 303 (481)
.... + ++++.|||++..... .... ...++|.+|||.+++++||||||||......+++.+++.+|+
T Consensus 236 ~~~~---~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 236 EKAI---K---KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred Hhhc---C---CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 6543 2 579999999753211 0000 123579999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCCCCCccccccc-cccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCc
Q 042987 304 RSGVKFLWVVRAPAPDSIENRSSL-ESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (481)
Q Consensus 304 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP 382 (481)
.++.+|||+++.+... .+. ...+|++|.+++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 310 ~~~~~flW~~r~~~~~-----~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 310 ASKKPFIWVIKTGEKH-----SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred hCCCCEEEEEecCccc-----cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 9999999999843110 011 1236899999988889999899999999999999999999999999999999999
Q ss_pred EEecccccchhHHHHHHHHHhceeeEeecCC-------ccCc-ccCHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHH
Q 042987 383 MLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE-------EKDR-LVSAAELEQRVSELMD--SEKGRAVKERAVAMKEAAA 452 (481)
Q Consensus 383 ~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-------~~~~-~~~~~~l~~~i~~~l~--~~~~~~~~~~a~~l~~~~~ 452 (481)
||++|++.||+.||+++++.||+|+.+.... ++.+ .+++++|+++|+++|. +++++++|+||++|++.++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885211 0112 4899999999999997 4557899999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHhc
Q 042987 453 AAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 453 ~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
+++.+||||++++++|++++++.
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 11
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=8.8e-67 Score=516.87 Aligned_cols=430 Identities=23% Similarity=0.397 Sum_probs=331.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS 82 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (481)
.||+++|+|++||++|++.||+.|+++| ++|||+++...... ....+ ...++++|+.+|+. ++++..
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~~---~~~~~----~~~~~i~~v~lp~g---~~~~~~- 73 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRG--FEPVVITPEFIHRR---ISATL----DPKLGITFMSISDG---QDDDPP- 73 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCC--CEEEEEeCcchhhh---hhhcc----CCCCCEEEEECCCC---CCCCcc-
Confidence 3999999999999999999999999999 99999987654321 11111 11246999998864 433211
Q ss_pred CCCchHHHHHHHH-hhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccccc
Q 042987 83 PADFPALVYELGE-LNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (481)
.+.. .+...+. .+.+.++++++++....+++|||+|.+++|+..+| +++|||++.|++++++.++.+.+.+.....
T Consensus 74 -~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA-~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 74 -RDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVA-DRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred -ccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHH-HHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 1222 2333443 46777888887763322458999999999999999 999999999999998887777766543322
Q ss_pred cCccccc--cC-cccccCCCCCCCCcccCCCcccCC--CchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccC
Q 042987 162 TTKSFRE--LG-STLLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 162 ~~~~~~~--~~-~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 236 (481)
....... .. .....+|+++.++..+++..+... ....++.+.+..+...+++++++|||.+||+..+..+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~- 229 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY- 229 (448)
T ss_pred cccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh-
Confidence 1111000 00 111257888888889998765432 23345666666677778899999999999998887765432
Q ss_pred CCCCC-CCCeEEeCcccCCCCC----CCCCCCcchhhhhhcCCCCCcEEEEecCCCc-CCCHHHHHHHHHHHHhCCCeEE
Q 042987 237 TPGET-SPPLYCIGPVVGRGNG----ENRGRDRHECLSWLDSKPSRSVLFLCFGSLG-SFSSKQLKEMAIGLERSGVKFL 310 (481)
Q Consensus 237 ~~~~~-~~~v~~vGpl~~~~~~----~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i 310 (481)
.++ .|+++.|||++..... ...++.+.+|.+||++++++++|||||||+. ..+.+++++++.+|++++++||
T Consensus 230 --~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 230 --NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred --ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 111 2789999999865321 1001234568899999998899999999986 6789999999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc
Q 042987 311 WVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~ 390 (481)
|+++.+ ....+|++|.++... |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 308 W~~~~~----------~~~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 376 (448)
T PLN02562 308 WVLNPV----------WREGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAG 376 (448)
T ss_pred EEEcCC----------chhhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCccc
Confidence 999653 122478888888754 556679999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042987 391 EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 470 (481)
||+.||+++++.+|+|+.+. + +++++|.++|+++|.|++ ||+||++++++++++ ++||||++++++|++
T Consensus 377 DQ~~na~~~~~~~g~g~~~~--~-----~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~ 445 (448)
T PLN02562 377 DQFVNCAYIVDVWKIGVRIS--G-----FGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFTTLKD 445 (448)
T ss_pred chHHHHHHHHHHhCceeEeC--C-----CCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Confidence 99999999977789998884 4 789999999999998877 999999999999876 667999999999999
Q ss_pred HHH
Q 042987 471 SFK 473 (481)
Q Consensus 471 ~~~ 473 (481)
+++
T Consensus 446 ~~~ 448 (448)
T PLN02562 446 ELK 448 (448)
T ss_pred HhC
Confidence 873
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-66 Score=521.75 Aligned_cols=457 Identities=36% Similarity=0.660 Sum_probs=339.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccC-CCCCeeEEEcCCCCCCCCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSA-TAPSVTFHQLPPPVSGLPDT 79 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~l~~~ 79 (481)
||.||+++|+|++||++||+.||+.|+.+|....|||+++....+.....+..+.+... ..++++|+.+|++.. +..
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--~~~ 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ--PTT 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC--Ccc
Confidence 88999999999999999999999999999733679999876543211000111222111 134699999986632 111
Q ss_pred CCCCCCchHHHHHHHHhhhHHHHHHHHHhhc-----cCCc-cEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHh
Q 042987 80 LRSPADFPALVYELGELNNPKLHETLITISK-----RSNL-KAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANL 153 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~p-D~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~ 153 (481)
. .. .+...+......+++.++++.+ ..+| +|||+|.+++|+..+| +++|||++.|++++++.++.+.
T Consensus 79 -~----~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA-~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 79 -E----DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVA-NEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred -c----ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHH-HHhCCCEEEEeCCcHHHHHHHH
Confidence 1 11 3333444455556666665532 1133 8999999999999999 9999999999999999999888
Q ss_pred hhcccccccCccccc-cC-cccccCCCCC-CCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHH
Q 042987 154 YLPTLHKNTTKSFRE-LG-STLLNFPGFP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKA 230 (481)
Q Consensus 154 ~~p~~~~~~~~~~~~-~~-~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 230 (481)
+++........++.. .. ...+.+|+++ +++..+++..+..+ .+++.+.+......+++++++|||.+||+.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 877643221111111 01 1234588884 78888888755432 3455666666777889999999999999999888
Q ss_pred HHcccCCCCCCCCCeEEeCcccC-CCCCCC-CCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCe
Q 042987 231 MLEGQCTPGETSPPLYCIGPVVG-RGNGEN-RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK 308 (481)
Q Consensus 231 ~~~~~~~~~~~~~~v~~vGpl~~-~~~~~~-~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 308 (481)
+.+... ..|+++.|||++. ..+... ....+++|.+||++++++++|||||||+...+.+++.+++.+|+.++++
T Consensus 230 l~~~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 230 FSGSSG----DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHhccc----CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 876310 1278999999943 222110 0134578999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCcc---cc-ccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEE
Q 042987 309 FLWVVRAPAPDSIE---NR-SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 309 ~i~~~~~~~~~~~~---~~-~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l 384 (481)
|||+++.+...... .+ .+....+|++|.++.+.++ ++.+|+||.+||.|+++++|||||||||++||+++|||||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 99999753110000 00 0112236899999887655 5559999999999999999999999999999999999999
Q ss_pred ecccccchhHHHHHHHHHhceeeEeecCC------ccCcccCHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHhc
Q 042987 385 AWPLYAEQKMIRAVVVEEMKVGLAVTRSE------EKDRLVSAAELEQRVSELMD-SEKGRAVKERAVAMKEAAAAAMRD 457 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~------~~~~~~~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~ 457 (481)
++|+++||+.||+++++.+|+|+.+.... ..++.+++++|+++|+++|. |++ ||+||+++++.+++++++
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRVKEMSEKCHVALMD 461 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999966557889999986410 01234899999999999996 554 999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcc
Q 042987 458 GGSSRVALDNLVESFKRGC 476 (481)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~ 476 (481)
|||++.++++|++++.+..
T Consensus 462 gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred CChHHHHHHHHHHHHHhhC
Confidence 9999999999999998753
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-66 Score=511.69 Aligned_cols=424 Identities=22% Similarity=0.372 Sum_probs=326.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC--CCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP--VSGLPDTL 80 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~l~~~~ 80 (481)
+||+++|+|++||++|++.||+.|+++| |+|||+++..... .+.+......++.|..++.+ ++ +|.+.
T Consensus 5 ~hvv~~P~paqGHi~P~l~LAk~La~~G--~~VT~vtt~~~~~-------~i~~~~a~~~~i~~~~l~~p~~dg-Lp~g~ 74 (442)
T PLN02208 5 FHAFMFPWFAFGHMIPFLHLANKLAEKG--HRVTFLLPKKAQK-------QLEHHNLFPDSIVFHPLTIPPVNG-LPAGA 74 (442)
T ss_pred CEEEEecCccccHHHHHHHHHHHHHhCC--CEEEEEeccchhh-------hhhcccCCCCceEEEEeCCCCccC-CCCCc
Confidence 5999999999999999999999999999 9999998664322 22222111235677766543 33 77664
Q ss_pred CCCCCch----HHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhc
Q 042987 81 RSPADFP----ALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (481)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p 156 (481)
+...+.. ..+........+.+++++++. ++||||+| +++|+..+| +++|||++.|++++++.++ +.+.+
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~----~~~cVV~D-~~~wa~~vA-~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLTRDQVEAAVRAL----RPDLIFFD-FAQWIPEMA-KEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEC-CcHhHHHHH-HHhCCCEEEEEhhhHHHHH-HHccC
Confidence 4322222 223333445566666666665 89999999 589999999 9999999999999987654 54444
Q ss_pred ccccccCccccccCcccccCCCCCC----CCcccCCCcccCCCchHHHHHHHHH-hhhcccceEEEcCchhhhHHHHHHH
Q 042987 157 TLHKNTTKSFRELGSTLLNFPGFPP----FPARDMALPMHDREGKVYKGLVDTG-IQMAKSAGVIVNTFELLEERAIKAM 231 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~~~~~~ 231 (481)
.. . . ...+|++|. ++..+++.. ......++.+.+.. +...+++++++|||.+||+.++.++
T Consensus 148 ~~--~--~--------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~ 213 (442)
T PLN02208 148 GG--K--L--------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYI 213 (442)
T ss_pred cc--c--c--------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHH
Confidence 20 0 0 012466653 455666642 22223334444332 4566789999999999999999888
Q ss_pred HcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 042987 232 LEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLW 311 (481)
Q Consensus 232 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 311 (481)
.... + |+++.|||++....... +.+++|.+|||.++++++|||||||+...+.+++.+++.+++..+.+|+|
T Consensus 214 ~~~~---~---~~v~~vGpl~~~~~~~~--~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~w 285 (442)
T PLN02208 214 SRQY---H---KKVLLTGPMFPEPDTSK--PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLI 285 (442)
T ss_pred Hhhc---C---CCEEEEeecccCcCCCC--CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 6532 2 78999999986533111 45788999999999899999999999998999999999999889999999
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccc
Q 042987 312 VVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE 391 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~D 391 (481)
+++.+.... .....+|++|.++++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 286 v~r~~~~~~-----~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~D 360 (442)
T PLN02208 286 AVKPPRGSS-----TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360 (442)
T ss_pred EEeCCCccc-----chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchh
Confidence 998531100 112458999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042987 392 QKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 469 (481)
|+.||+++++.+|+|+.+...+ ++.+++++|+++|+++|+++ +++++|++++++++.+. ++|||+.++++|+
T Consensus 361 Q~~na~~~~~~~g~gv~~~~~~--~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v 434 (442)
T PLN02208 361 QVLFTRLMTEEFEVSVEVSREK--TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFV 434 (442)
T ss_pred hHHHHHHHHHHhceeEEecccc--CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHH
Confidence 9999999877789999997532 34589999999999999865 38899999999999874 3789999999999
Q ss_pred HHHHhcc
Q 042987 470 ESFKRGC 476 (481)
Q Consensus 470 ~~~~~~~ 476 (481)
+++++..
T Consensus 435 ~~l~~~~ 441 (442)
T PLN02208 435 EELQEYL 441 (442)
T ss_pred HHHHHhc
Confidence 9997653
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.4e-66 Score=514.27 Aligned_cols=430 Identities=24% Similarity=0.407 Sum_probs=327.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHH--HHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKL--ILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTL 80 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~--L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (481)
.||+++|+|++||++|++.||++ |.++| ++|||+++..... .++........+++..+++ + +|.+.
T Consensus 9 ~hvv~~P~pa~GHi~P~l~La~~L~L~~~G--~~VT~v~t~~~~~-------~~~~~~~~~~~~~~~~~~~--g-lp~~~ 76 (456)
T PLN02210 9 THVLMVTLAFQGHINPMLKLAKHLSLSSKN--LHFTLATTEQARD-------LLSTVEKPRRPVDLVFFSD--G-LPKDD 76 (456)
T ss_pred CEEEEeCCcccccHHHHHHHHHHHHhhcCC--cEEEEEeccchhh-------hhccccCCCCceEEEECCC--C-CCCCc
Confidence 49999999999999999999999 56999 9999998774432 1222111234577777663 3 66553
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccccc
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 160 (481)
+. +....+....+.+.+.+++++++. ++||||+|.+++|+..+| +++|||++.||++++..++.+.+.+....
T Consensus 77 ~~--~~~~~~~~~~~~~~~~l~~~l~~~----~~~~vI~D~~~~w~~~vA-~~lgIP~~~f~~~sa~~~~~~~~~~~~~~ 149 (456)
T PLN02210 77 PR--APETLLKSLNKVGAKNLSKIIEEK----RYSCIISSPFTPWVPAVA-AAHNIPCAILWIQACGAYSVYYRYYMKTN 149 (456)
T ss_pred cc--CHHHHHHHHHHhhhHHHHHHHhcC----CCcEEEECCcchhHHHHH-HHhCCCEEEEecccHHHHHHHHhhhhccC
Confidence 21 222222223334455566666554 899999999999999999 99999999999999988777765532111
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHH-HHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCC
Q 042987 161 NTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLV-DTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPG 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 239 (481)
. .+..........+|++++++..+++..+.......+.... +........+++++|||.+||++++..+.+ .
T Consensus 150 ~--~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~---- 222 (456)
T PLN02210 150 S--FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L---- 222 (456)
T ss_pred C--CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c----
Confidence 1 1110000122457888888888888766544333333333 332345667899999999999999888765 2
Q ss_pred CCCCCeEEeCcccCCC---CCC----C-----CCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCC
Q 042987 240 ETSPPLYCIGPVVGRG---NGE----N-----RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGV 307 (481)
Q Consensus 240 ~~~~~v~~vGpl~~~~---~~~----~-----~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 307 (481)
+++++|||++... ... . -+..+++|.+||++++++++|||||||+...+.+++++++.+|+.++.
T Consensus 223 ---~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 223 ---KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred ---CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 6899999997521 110 0 023356799999999989999999999998899999999999999999
Q ss_pred eEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEec
Q 042987 308 KFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~ 386 (481)
+|||+++... ....+.++.++.. +++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 300 ~flw~~~~~~----------~~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 300 PFLWVIRPKE----------KAQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred CEEEEEeCCc----------cccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 9999997531 1112345666663 445 456999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 042987 387 PLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALD 466 (481)
Q Consensus 387 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 466 (481)
|+++||+.||+++++.+|+|+.+...+ .++.+++++|+++|+++|.++++++||+||++|++.+++++++||||+.+++
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~-~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDA-VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccc-cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999987689999986421 1234899999999999998877889999999999999999999999999999
Q ss_pred HHHHHHH
Q 042987 467 NLVESFK 473 (481)
Q Consensus 467 ~~~~~~~ 473 (481)
+|++++.
T Consensus 448 ~~v~~~~ 454 (456)
T PLN02210 448 LFISDIT 454 (456)
T ss_pred HHHHHHh
Confidence 9999875
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.6e-66 Score=510.16 Aligned_cols=436 Identities=23% Similarity=0.402 Sum_probs=333.8
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCC
Q 042987 1 MKD-TIVFYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPD 78 (481)
Q Consensus 1 m~~-~il~~~~p~~GHv~P~l~La~~L~~-~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 78 (481)
|.+ ||+++|+|++||++|++.||+.|++ +| +.|||+++..... +....+. ...++++|+.+++ + ++.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G--~~vT~v~t~~~~~-----~~~~~~~-~~~~~i~~~~i~d--g-lp~ 69 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTG--TRVTFATCLSVIH-----RSMIPNH-NNVENLSFLTFSD--G-FDD 69 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCC--cEEEEEeccchhh-----hhhhccC-CCCCCEEEEEcCC--C-CCC
Confidence 554 9999999999999999999999996 69 9999998763211 1112111 1124699999974 3 666
Q ss_pred CCCC-CCCchHHHHHHHHhhhHHHHHHHHHhhcc-CCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhc
Q 042987 79 TLRS-PADFPALVYELGELNNPKLHETLITISKR-SNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (481)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p 156 (481)
+.+. ..+....+....+.+.+.++++++..... .+++|||+|.+++|+..+| +++|||++.|++++++.++.+++++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA-~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 70 GVISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVA-RRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHH-HHhCCCEEEEECccHHHHHHHHHhh
Confidence 5322 22344445555556778888888876422 3459999999999999999 9999999999999999888887654
Q ss_pred ccccccCccccccCcccccCCCCCCCCcccCCCcccCC--CchHHHHHHHHHhhhc--ccceEEEcCchhhhHHHHHHHH
Q 042987 157 TLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMA--KSAGVIVNTFELLEERAIKAML 232 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~~~ 232 (481)
... .....+|++++++..+++.++... .....+.+.+..+... .++++++|||.+||+.++..+.
T Consensus 149 ~~~-----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 149 TGN-----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred ccC-----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 211 113458899888899999876432 2223344444444333 2469999999999999988874
Q ss_pred cccCCCCCCCCCeEEeCcccCCCC--CC---CC---CCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh
Q 042987 233 EGQCTPGETSPPLYCIGPVVGRGN--GE---NR---GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER 304 (481)
Q Consensus 233 ~~~~~~~~~~~~v~~vGpl~~~~~--~~---~~---~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~ 304 (481)
. .+++.|||++.... .. .+ ++.+.+|.+|||++++++||||||||+...+.+++++++.+|+.
T Consensus 218 ~---------~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~ 288 (455)
T PLN02152 218 N---------IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIE 288 (455)
T ss_pred c---------CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 3 36999999975321 10 00 12245799999999988999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCcccccccc--ccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCc
Q 042987 305 SGVKFLWVVRAPAPDSIENRSSLE--SLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (481)
Q Consensus 305 ~~~~~i~~~~~~~~~~~~~~~~~~--~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP 382 (481)
++.+|||+++.+.......+.+.. ..+|++|.++.+.++ ++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 289 s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP 367 (455)
T PLN02152 289 GKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVP 367 (455)
T ss_pred cCCCeEEEEecCcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCC
Confidence 999999999853211000000001 124788988887555 55599999999999999999999999999999999999
Q ss_pred EEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChH
Q 042987 383 MLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSR 462 (481)
Q Consensus 383 ~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (481)
+|++|+++||+.||+++++.||+|+.+.... ++.+++++|+++|+++|+|+ +++||+||+++++.+++++.+||||+
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~--~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~ 444 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVRENS--EGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSD 444 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeecCc--CCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999988778888775422 23379999999999999754 56799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042987 463 VALDNLVESF 472 (481)
Q Consensus 463 ~~~~~~~~~~ 472 (481)
.++++|++++
T Consensus 445 ~nl~~li~~i 454 (455)
T PLN02152 445 KNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.6e-66 Score=505.05 Aligned_cols=430 Identities=22% Similarity=0.355 Sum_probs=328.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLR 81 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (481)
++||+++|+|++||++|++.||+.|+.+| +.|||+++...... .+.. . .......+.+..+|..++ +|.+.+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g--~~vT~~tt~~~~~~---~~~~-~-~~~~~~~v~~~~~p~~~g-lp~g~e 76 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKG--HTVTFLLPKKALKQ---LEHL-N-LFPHNIVFRSVTVPHVDG-LPVGTE 76 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCC--CEEEEEeCcchhhh---hccc-c-cCCCCceEEEEECCCcCC-CCCccc
Confidence 46999999999999999999999999999 99999987654321 1111 1 000112377777775444 776644
Q ss_pred CCCCch----HHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPADFP----ALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~ 157 (481)
+..+.. ..+...++...+.+++++++. ++||||+|. ++|+..+| +++|||++.|++++++.++.+.+ +.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~~~iV~D~-~~w~~~vA-~~~gIP~~~f~~~~a~~~~~~~~-~~ 149 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV----EPDLIFFDF-AHWIPEVA-RDFGLKTVKYVVVSASTIASMLV-PG 149 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhC----CCCEEEECC-chhHHHHH-HHhCCCEEEEEcHHHHHHHHHhc-cc
Confidence 332222 223344444556777777665 789999995 89999999 99999999999999987777653 11
Q ss_pred cccccCccccccCcccccCCCCC----CCCcccCCCccc-CCC---chHHHHHHHHHhhhcccceEEEcCchhhhHHHHH
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFP----PFPARDMALPMH-DRE---GKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIK 229 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 229 (481)
. . . ...+|++| .++..+++.... ... ........+......+++++++|||.+||+.++.
T Consensus 150 ---~-~--~------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 150 ---G-E--L------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred ---c-c--C------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH
Confidence 0 0 0 01236665 255566654311 111 1122222233255677889999999999999999
Q ss_pred HHHcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeE
Q 042987 230 AMLEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
++.... + ++++.|||++....... ..+++|.+|||+++++|||||||||+...+.+++.+++.+|+..+.+|
T Consensus 218 ~~~~~~---~---~~v~~VGPL~~~~~~~~--~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pf 289 (453)
T PLN02764 218 YIEKHC---R---KKVLLTGPVFPEPDKTR--ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPF 289 (453)
T ss_pred HHHhhc---C---CcEEEeccCccCccccc--cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCe
Confidence 887632 1 57999999975431111 235689999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc
Q 042987 310 LWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~ 389 (481)
+|+++.+... + +....+|++|+++++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 290 lwv~r~~~~~----~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~ 364 (453)
T PLN02764 290 LVAVKPPRGS----S-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL 364 (453)
T ss_pred EEEEeCCCCC----c-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999853111 0 1234699999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
.||+.||+++++.+|+|+.+...+ .+.+++++|+++|+++|.++ .++++|+++++++++++ ++||+++++++
T Consensus 365 ~DQ~~na~~l~~~~g~gv~~~~~~--~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 365 GDQVLNTRLLSDELKVSVEVAREE--TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred cchHHHHHHHHHHhceEEEecccc--CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 999999999977789999875421 12389999999999999873 47889999999999986 48999999999
Q ss_pred HHHHHHhccC
Q 042987 468 LVESFKRGCI 477 (481)
Q Consensus 468 ~~~~~~~~~~ 477 (481)
|++++.+...
T Consensus 439 lv~~~~~~~~ 448 (453)
T PLN02764 439 FIESLQDLVS 448 (453)
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 17
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.8e-66 Score=508.65 Aligned_cols=427 Identities=23% Similarity=0.365 Sum_probs=320.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC--CCCCCCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP--VSGLPDT 79 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~l~~~ 79 (481)
++||+++|+|++||++|++.||+.|+++| ++|||+++..... .+.......+++.|..++.+ ++ +|.+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~-------~i~~~~~~~~~i~~~~i~lP~~dG-LP~g 73 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKG--HRVTFFLPKKAHK-------QLQPLNLFPDSIVFEPLTLPPVDG-LPFG 73 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCchhh-------hhcccccCCCceEEEEecCCCcCC-CCCc
Confidence 46999999999999999999999999999 9999998764322 12111112235788666533 33 7765
Q ss_pred CCCCCCchH----HHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhh
Q 042987 80 LRSPADFPA----LVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (481)
Q Consensus 80 ~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~ 155 (481)
.+...+... .+........+.++++++. .+|||||+|. ++|+..+| +++|||++.|++++++.++.+.+
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~----~~p~cVV~D~-~~wa~~vA-~~lgIP~~~F~~~~a~~~~~~~~- 146 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRA----LKPDLIFFDF-VHWVPEMA-KEFGIKSVNYQIISAACVAMVLA- 146 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEECC-chhHHHHH-HHhCCCEEEEecHHHHHHHHHhC-
Confidence 443333321 2233333344555555544 3889999995 89999999 99999999999999988777665
Q ss_pred cccccccCccccccCcccccCCCCCC----CCcccC--CCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHH
Q 042987 156 PTLHKNTTKSFRELGSTLLNFPGFPP----FPARDM--ALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIK 229 (481)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 229 (481)
+. ... . ..+|++|. ++..+. +.++ .. ....+.+..+...+++++++|||.+||+.++.
T Consensus 147 ~~--~~~--------~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 147 PR--AEL--------G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred cH--hhc--------C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHH
Confidence 21 000 0 11344442 222221 1212 11 12333444456677899999999999999998
Q ss_pred HHHcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeE
Q 042987 230 AMLEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
.+.... + ++++.|||++............++|.+|||.++++|||||||||....+.+++.+++.+|+.++.+|
T Consensus 211 ~~~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~F 284 (446)
T PLN00414 211 FIERQC---Q---RKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPF 284 (446)
T ss_pred HHHHhc---C---CCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCe
Confidence 887642 1 5799999997543211000224579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc
Q 042987 310 LWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~ 389 (481)
+|++..+.... +....+|++|.++++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 285 lwvvr~~~~~~-----~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 359 (446)
T PLN00414 285 LIAVMPPKGSS-----TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL 359 (446)
T ss_pred EEEEecCCCcc-----cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc
Confidence 99998642110 1124689999999999999998999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
.||+.||+++++.+|+|+.+...+ ++.+++++|+++++++|.|+ .+++||++++++++.+. ++||++ ..+++
T Consensus 360 ~dQ~~na~~~~~~~g~g~~~~~~~--~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~ 433 (446)
T PLN00414 360 ADQVLITRLLTEELEVSVKVQRED--SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADK 433 (446)
T ss_pred cchHHHHHHHHHHhCeEEEecccc--CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHH
Confidence 999999999987899999996432 23589999999999999864 37889999999999974 568845 44899
Q ss_pred HHHHHHhccCC
Q 042987 468 LVESFKRGCIA 478 (481)
Q Consensus 468 ~~~~~~~~~~~ 478 (481)
|++++++...+
T Consensus 434 ~v~~~~~~~~~ 444 (446)
T PLN00414 434 FVEALENEVNN 444 (446)
T ss_pred HHHHHHHhccc
Confidence 99999776543
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-66 Score=516.90 Aligned_cols=452 Identities=34% Similarity=0.645 Sum_probs=334.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE---EEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFS---IDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDT 79 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~---Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (481)
.||+++|+|++||++|++.||+.|+.+| .. ||+.++....+. ..+..+.+.....++++|+.+|+... +.+
T Consensus 4 ~hVv~~PfpaqGHi~P~l~LAk~La~~G--~~~t~vt~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~--p~~ 77 (475)
T PLN02167 4 AELIFVPFPSTGHILVTIEFAKRLINLD--RRIHTITILYWSLPFAP--QADAFLKSLIASEPRIRLVTLPEVQD--PPP 77 (475)
T ss_pred cEEEEeCChhhhhHHHHHHHHHHHHhCC--CCeEEEEEEECCCCcch--hhhHHHhhcccCCCCeEEEECCCCCC--Ccc
Confidence 4999999999999999999999999998 54 455544332211 11122222212234799999997532 211
Q ss_pred CCC-CCCchHHHHHHHHhhhHHHHHHHHHhhcc-----C-CccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhH
Q 042987 80 LRS-PADFPALVYELGELNNPKLHETLITISKR-----S-NLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAAN 152 (481)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~-~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~ 152 (481)
.+. .......+...++.+.+.+++.++++..+ . +++|||+|.+++|+..+| +++|||++.|++++++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVG-NEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHH-HHhCCCEEEEECccHHHHHHH
Confidence 111 11122344555556666777777765321 1 359999999999999999 999999999999999888888
Q ss_pred hhhcccccccCcccccc-CcccccCCCC-CCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHH
Q 042987 153 LYLPTLHKNTTKSFREL-GSTLLNFPGF-PPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKA 230 (481)
Q Consensus 153 ~~~p~~~~~~~~~~~~~-~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 230 (481)
.++|.........+... ......+||+ ++++..+++..+.... ....+.+......+++++++|||.+||+.++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 77664321111011010 0123457888 4688888876544321 233444555667778999999999999999988
Q ss_pred HHcccCCCCCCCCCeEEeCcccCCCCCCCC---CCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCC
Q 042987 231 MLEGQCTPGETSPPLYCIGPVVGRGNGENR---GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGV 307 (481)
Q Consensus 231 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~---~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 307 (481)
+.... ..+|++++|||++........ ....++|.+||+.++++++|||||||+...+.+++.+++.+|+.+++
T Consensus 235 l~~~~----~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 235 FSRLP----ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHhhc----ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 86531 112789999999864321100 02236799999999989999999999998999999999999999999
Q ss_pred eEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecc
Q 042987 308 KFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387 (481)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P 387 (481)
+|||+++.+... .......+|++|.++++.+++ +.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 311 ~flw~~~~~~~~----~~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 311 RFLWSIRTNPAE----YASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred cEEEEEecCccc----ccchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 999999853110 001123589999999987765 449999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHhceeeEeecCC--ccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 042987 388 LYAEQKMIRAVVVEEMKVGLAVTRSE--EKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVAL 465 (481)
Q Consensus 388 ~~~DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (481)
+++||+.||+++.+.+|+|+.+.... +.++.+++++|+++|+++|.+++ .||++|+++++++++++.+|||+++++
T Consensus 386 ~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred ccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987657889999986421 01124799999999999997652 499999999999999999999999999
Q ss_pred HHHHHHHHh
Q 042987 466 DNLVESFKR 474 (481)
Q Consensus 466 ~~~~~~~~~ 474 (481)
++|++++.+
T Consensus 464 ~~~v~~i~~ 472 (475)
T PLN02167 464 KRFIDDLLG 472 (475)
T ss_pred HHHHHHHHh
Confidence 999999875
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-65 Score=512.77 Aligned_cols=435 Identities=31% Similarity=0.502 Sum_probs=334.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTL 80 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~--G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (481)
.||+++|+|++||++|++.||++|+++ | |+|||+++....+. +.... ...+++|+.+++. +|.+.
T Consensus 11 ~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G--~~VT~~~t~~~~~~-------i~~~~-~~~gi~fv~lp~~---~p~~~ 77 (459)
T PLN02448 11 CHVVAMPYPGRGHINPMMNLCKLLASRKPD--ILITFVVTEEWLGL-------IGSDP-KPDNIRFATIPNV---IPSEL 77 (459)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHcCCCC--cEEEEEeCCchHhH-------hhccC-CCCCEEEEECCCC---CCCcc
Confidence 599999999999999999999999999 9 99999988754332 22111 1247999999863 44333
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccccc
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 160 (481)
+...+....+....+.+.+.++++++++. .++||||+|.+++|+..+| +++|||++.++++++..++.+.+.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA-~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 78 VRAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVG-NRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred ccccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHH-HHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 22223333233333345667777776653 3689999999999999999 99999999999999988777777654432
Q ss_pred ccCcccccc--Ccc-cccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCC
Q 042987 161 NTTKSFREL--GST-LLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 161 ~~~~~~~~~--~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 237 (481)
....+.... ... ...+|++++++..+++..+........+.+.+......+++++++|||.+||+.++..+...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-- 232 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF-- 232 (459)
T ss_pred ccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc--
Confidence 211111110 011 113788888888888876554444445566666666677889999999999999988887643
Q ss_pred CCCCCCCeEEeCcccCCCCC---CCC--C-CCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 042987 238 PGETSPPLYCIGPVVGRGNG---ENR--G-RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLW 311 (481)
Q Consensus 238 ~~~~~~~v~~vGpl~~~~~~---~~~--~-~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 311 (481)
+ ++++.|||+...... ..+ . ..+.+|.+||+.++++++|||||||+...+.+++++++++|+..+++|||
T Consensus 233 -~---~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw 308 (459)
T PLN02448 233 -P---FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLW 308 (459)
T ss_pred -C---CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 479999999753211 000 0 12247999999998899999999999988899999999999999999999
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccc
Q 042987 312 VVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE 391 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~D 391 (481)
+++.+ ..++.++.. +|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 309 ~~~~~---------------~~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~D 372 (459)
T PLN02448 309 VARGE---------------ASRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWD 372 (459)
T ss_pred EEcCc---------------hhhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecccccc
Confidence 87642 123333332 36667799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042987 392 QKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 469 (481)
|+.||+++++.||+|+.+......++.+++++|+++|+++|.++ ++++||+||+++++++++++.+||||++++++|+
T Consensus 373 Q~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v 452 (459)
T PLN02448 373 QPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFI 452 (459)
T ss_pred chhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999877899999864311123479999999999999864 4788999999999999999999999999999999
Q ss_pred HHHHhc
Q 042987 470 ESFKRG 475 (481)
Q Consensus 470 ~~~~~~ 475 (481)
+.+++.
T Consensus 453 ~~~~~~ 458 (459)
T PLN02448 453 RDISQG 458 (459)
T ss_pred HHHhcc
Confidence 999864
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.5e-65 Score=514.67 Aligned_cols=451 Identities=30% Similarity=0.482 Sum_probs=324.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCC----CeeEEEcCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAP----SVTFHQLPPPVSGLPD 78 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~f~~~~~~~~~l~~ 78 (481)
.||+++|+|++||++|++.||++|+++| ++|||+++..... .++..........+ .+.+..+|..+.++|.
T Consensus 6 ~hVvlvp~pa~GHi~P~L~LAk~L~~rG--~~VT~vtt~~~~~---~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 6 LHILFFPFMAHGHMIPTLDMAKLFSSRG--AKSTILTTPLNAK---IFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred cEEEEECCCccccHHHHHHHHHHHHhCC--CEEEEEECCCchh---hhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 5999999999999999999999999999 9999999875432 12222221111111 3344444422112665
Q ss_pred CCCCCCC-------chHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhh
Q 042987 79 TLRSPAD-------FPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAA 151 (481)
Q Consensus 79 ~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~ 151 (481)
+.+.... ....+...+....+.+...++++.++.+|||||+|.+++|+..+| +++|||++.||+++++..+.
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA-~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAA-EKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHH-HHhCCCeEEeecccHHHHHH
Confidence 4433210 011112111122333334444433334899999999999999999 99999999999999877665
Q ss_pred HhhhcccccccCccccccCcccccCCCCC---CCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHH
Q 042987 152 NLYLPTLHKNTTKSFRELGSTLLNFPGFP---PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAI 228 (481)
Q Consensus 152 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 228 (481)
+........... ... ......+|++| .++..+++.. .........+........+.+++++|||.+||+.+.
T Consensus 160 ~~~~~~~~~~~~--~~~-~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 160 SYCIRVHKPQKK--VAS-SSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHhcccccc--cCC-CCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 543321111000 000 01122356665 2344444431 122223333444445677788999999999999988
Q ss_pred HHHHcccCCCCCCCCCeEEeCcccCCCCC-------C-CCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHH
Q 042987 229 KAMLEGQCTPGETSPPLYCIGPVVGRGNG-------E-NRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAI 300 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~v~~vGpl~~~~~~-------~-~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 300 (481)
..+.+.. + +++++|||+...... . ..+..+++|.+||+.++++++|||||||+...+.+++.+++.
T Consensus 235 ~~~~~~~---~---~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 235 DFYKSFV---A---KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHhcc---C---CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 8876643 1 479999998643211 0 001235779999999999999999999999888999999999
Q ss_pred HHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcC
Q 042987 301 GLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAG 380 (481)
Q Consensus 301 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~G 380 (481)
+|+.++.+|||+++.+... .+....+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 309 ~l~~~~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~G 383 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQ-----GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAG 383 (482)
T ss_pred HHHHCCCCEEEEEecCCcc-----cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcC
Confidence 9999999999999863110 01123589999999999999999999999999999999999999999999999999
Q ss_pred CcEEecccccchhHHHHHHHHHhceeeEeecCCc---cCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhc
Q 042987 381 VPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE---KDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRD 457 (481)
Q Consensus 381 vP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~---~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~ 457 (481)
||||++|+++||+.||+++++.+++|+.+...+. +.+.+++++|+++|+++|.|+++++||+||+++++.+++++.+
T Consensus 384 VP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~ 463 (482)
T PLN03007 384 LPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEE 463 (482)
T ss_pred CCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999877777776632100 1223899999999999999887788999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 042987 458 GGSSRVALDNLVESFKRG 475 (481)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~ 475 (481)
||||++++++|++.+++.
T Consensus 464 gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 464 GGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999998753
No 21
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2e-65 Score=505.27 Aligned_cols=443 Identities=24% Similarity=0.395 Sum_probs=331.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCC-CCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVS-GLPDTLR 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~l~~~~~ 81 (481)
.||+++|+|++||++||+.||+.|+.+| +.|||+++....... +.... ...++++|+.++.++. ++|.+.+
T Consensus 7 ~HVvl~P~paqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~~~---~~~~~---~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 7 LHVAMFPWLAMGHLIPFLRLSKLLAQKG--HKISFISTPRNLHRL---PKIPS---QLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred cEEEEeCChhhhHHHHHHHHHHHHHhCC--CEEEEEeCCchHHhh---hhccc---cCCCCeeEEECCCCccCCCCCCcc
Confidence 4999999999999999999999999999 999999876433211 11101 1124699999986532 2665544
Q ss_pred CCCCch----HHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPADFP----ALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~ 157 (481)
...+.. ..+....+...+.+++++++. +++|||+|.+++|+..+| +++|||++.|++++++.++.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~cvI~D~f~~wa~~vA-~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS----KPDWIIYDYASHWLPSIA-AELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhC----CCcEEEECCcchhHHHHH-HHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 333332 123334444556666666654 899999999999999999 99999999999999988777654432
Q ss_pred cccccCccccccCcccccCCCCC------CCCcccCCCcccCC--CchHHHHHHHHHhhhcccceEEEcCchhhhHHHHH
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFP------PFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIK 229 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 229 (481)
....+...... .....+|+.. .++..+++.++... .......+.+......+++++++|||.+||+.++.
T Consensus 154 ~~~~~~~~~~~--~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 154 LMEGGDLRSTA--EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hhhcccCCCcc--ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 22211111101 1111133332 24456777655321 11223444455555677889999999999999999
Q ss_pred HHHcccCCCCCCCCCeEEeCcccCCC-CCCCCCC----CcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh
Q 042987 230 AMLEGQCTPGETSPPLYCIGPVVGRG-NGENRGR----DRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER 304 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~v~~vGpl~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~ 304 (481)
.+.... + ++++.|||+.... ....+.. ..++|.+|||++++++||||||||+...+.+++.+++.+|+.
T Consensus 232 ~l~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 232 LLSDLY---R---KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHHhh---C---CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 987643 1 5799999997531 1111001 125799999999989999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEE
Q 042987 305 SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 305 ~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l 384 (481)
++.+|||+++.+... ..+....+|++|.++++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 306 s~~~FlWv~r~~~~~----~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 306 SETPFFWVLRNEPGT----TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred CCCCEEEEEcCCccc----ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 999999999853110 0011235899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 042987 385 AWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVA 464 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 464 (481)
++|+++||+.||++++ .+|+|+.+...+ .++.+++++|+++|+++|.|+++++||+||+++++.++. .+.....
T Consensus 382 ~~P~~~DQ~~Na~~v~-~~g~Gv~l~~~~-~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~ 455 (472)
T PLN02670 382 LFPVLNEQGLNTRLLH-GKKLGLEVPRDE-RDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRY 455 (472)
T ss_pred eCcchhccHHHHHHHH-HcCeeEEeeccc-cCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHH
Confidence 9999999999999995 679999997532 123489999999999999887677899999999999984 4555589
Q ss_pred HHHHHHHHHhcc
Q 042987 465 LDNLVESFKRGC 476 (481)
Q Consensus 465 ~~~~~~~~~~~~ 476 (481)
+++|++.+.+++
T Consensus 456 ~~~~~~~l~~~~ 467 (472)
T PLN02670 456 VDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHhc
Confidence 999999999887
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.8e-46 Score=371.80 Aligned_cols=395 Identities=16% Similarity=0.212 Sum_probs=257.0
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC
Q 042987 4 TIVFY-TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS 82 (481)
Q Consensus 4 ~il~~-~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (481)
+|+.+ |.++.+|..-+-+|+++|++|| |+||++++....... .. ...+++...++.....+.+....
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG--H~VTvi~p~~~~~~~-----~~-----~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG--HNVTVIKPTLRVYYA-----SH-----LCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC--CeEEEEecccccccc-----cC-----CCCCEEEEEcCCChHHHHHHHhh
Confidence 57755 8899999999999999999999 999999765321110 00 12355655554221100100000
Q ss_pred C---------CCchH----HHHHHHHh-----hhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhc-CCceEEEec
Q 042987 83 P---------ADFPA----LVYELGEL-----NNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTL-SIPTYYYFT 143 (481)
Q Consensus 83 ~---------~~~~~----~~~~~~~~-----~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~l-giP~v~~~~ 143 (481)
. .+... .+...... ....+.++++. ++.++|+||+|.+..++..+| +++ ++|.|.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~~kFDlvi~e~~~~c~~~la-~~~~~~p~i~~ss 166 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KNNKFDLLVTEAFLDYPLVFS-HLFGDAPVIQISS 166 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CCCceeEEEecccchhHHHHH-HHhCCCCEEEEcC
Confidence 0 00000 00010111 12334444431 134799999998888888889 999 999988877
Q ss_pred cchhhHh-hHhh-hcccccccCccccccCcccccCCCCCCCCcccCCCcccCCC--------------------chHHHH
Q 042987 144 TAGSVLA-ANLY-LPTLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDRE--------------------GKVYKG 201 (481)
Q Consensus 144 ~~~~~~~-~~~~-~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 201 (481)
....... .... .|... ..+|.+.......+. +.+|. +...+.
T Consensus 167 ~~~~~~~~~~~gg~p~~~--------------syvP~~~~~~~~~Ms--f~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~ 230 (507)
T PHA03392 167 GYGLAENFETMGAVSRHP--------------VYYPNLWRSKFGNLN--VWETINEIYTELRLYNEFSLLADEQNKLLKQ 230 (507)
T ss_pred CCCchhHHHhhccCCCCC--------------eeeCCcccCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5543211 1111 11110 011111100000010 11111 000011
Q ss_pred HHH-----HHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCCCC-CCeEEeCcccCCCCCCCCCCCcchhhhhhcCCC
Q 042987 202 LVD-----TGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGETS-PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKP 275 (481)
Q Consensus 202 ~~~-----~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~ 275 (481)
+.. ..+...+.+.+++|+.+.++. ++++ |++++|||++....+.. +.++++.+|++.++
T Consensus 231 ~f~~~~~~~~~l~~~~~l~lvns~~~~d~-------------~rp~~p~v~~vGgi~~~~~~~~--~l~~~l~~fl~~~~ 295 (507)
T PHA03392 231 QFGPDTPTIRELRNRVQLLFVNVHPVFDN-------------NRPVPPSVQYLGGLHLHKKPPQ--PLDDYLEEFLNNST 295 (507)
T ss_pred HcCCCCCCHHHHHhCCcEEEEecCccccC-------------CCCCCCCeeeecccccCCCCCC--CCCHHHHHHHhcCC
Confidence 100 001112234556666666654 3454 78999999987532222 67899999999865
Q ss_pred CCcEEEEecCCCc---CCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccch
Q 042987 276 SRSVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQ 352 (481)
Q Consensus 276 ~~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~ 352 (481)
+++|||||||+. ..+.+.++.+++++++.+.+|||+++... .+ ...++|+.+.+|+||
T Consensus 296 -~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------------~~-----~~~p~Nv~i~~w~Pq 356 (507)
T PHA03392 296 -NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------------EA-----INLPANVLTQKWFPQ 356 (507)
T ss_pred -CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------------Cc-----ccCCCceEEecCCCH
Confidence 469999999986 34678899999999999999999987531 01 012458999999999
Q ss_pred hhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 353 ~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+|++ ++|+|+.++..+ ++.++|.++|++++
T Consensus 357 ~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~~-----~t~~~l~~ai~~vl 430 (507)
T PHA03392 357 RAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTVT-----VSAAQLVLAIVDVI 430 (507)
T ss_pred HHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccCC-----cCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999995 669999999988 99999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042987 433 DSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 433 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (481)
+|++ |++||+++++.++. +.-.....++..+..-+++
T Consensus 431 ~~~~---y~~~a~~ls~~~~~--~p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 431 ENPK---YRKNLKELRHLIRH--QPMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred CCHH---HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhC
Confidence 9988 99999999999994 1222344566555444443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.3e-46 Score=380.56 Aligned_cols=179 Identities=28% Similarity=0.470 Sum_probs=145.6
Q ss_pred CCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHH-HHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 042987 243 PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRAPAPDSI 321 (481)
Q Consensus 243 ~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~ 321 (481)
|++++||+++...++ +.+.++++|++...++++|||||||+....++. .+.+++++++.+.+|||++.+.
T Consensus 246 p~v~~vGgl~~~~~~----~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----- 316 (500)
T PF00201_consen 246 PNVVEVGGLHIKPAK----PLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----- 316 (500)
T ss_dssp CTSTTGCGC-S--------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----
T ss_pred hcccccCcccccccc----ccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----
Confidence 899999999876554 788999999998556779999999998544555 7889999999999999999652
Q ss_pred cccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHH
Q 042987 322 ENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVE 401 (481)
Q Consensus 322 ~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 401 (481)
....+ ++|+.+.+|+||.+||.|+++++||||||+||++||+++|||+|++|+++||+.||++++
T Consensus 317 -----~~~~l---------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~- 381 (500)
T PF00201_consen 317 -----PPENL---------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVE- 381 (500)
T ss_dssp -----HGCHH---------HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHH-
T ss_pred -----ccccc---------cceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEE-
Confidence 01112 248889999999999999999999999999999999999999999999999999999995
Q ss_pred HhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 042987 402 EMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAA 453 (481)
Q Consensus 402 ~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 453 (481)
+.|+|+.++..+ ++.++|.++|+++|+|++ |++||+++++.++.
T Consensus 382 ~~G~g~~l~~~~-----~~~~~l~~ai~~vl~~~~---y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 382 EKGVGVVLDKND-----LTEEELRAAIREVLENPS---YKENAKRLSSLFRD 425 (500)
T ss_dssp HTTSEEEEGGGC------SHHHHHHHHHHHHHSHH---HHHHHHHHHHTTT-
T ss_pred EEeeEEEEEecC-----CcHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhc
Confidence 559999999988 999999999999999998 99999999999984
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.8e-42 Score=343.53 Aligned_cols=378 Identities=18% Similarity=0.249 Sum_probs=242.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCC--CC
Q 042987 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSP--AD 85 (481)
Q Consensus 8 ~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~--~~ 85 (481)
+.+|++||++|++.||++|+++| |+|+|+++. .++..++.. |+.|..++.... .++..+.. .+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~G--h~V~~~~~~-------~~~~~v~~~-----G~~~~~~~~~~~-~~~~~~~~~~~~ 65 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARG--HRVTYATTE-------EFAERVEAA-----GAEFVLYGSALP-PPDNPPENTEEE 65 (392)
T ss_pred CCCCccccccccHHHHHHHHhCC--CeEEEEeCH-------HHHHHHHHc-----CCEEEecCCcCc-cccccccccCcc
Confidence 36899999999999999999999 999999886 444455554 889988876422 11111100 11
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccccccCcc
Q 042987 86 FPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKS 165 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 165 (481)
....+..+.......+..+++ ..++.+||+||+|.++.++..+| +++|||+|.+++.+... ..++.... +
T Consensus 66 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~pDlVi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~----~~~~~~~~----~ 135 (392)
T TIGR01426 66 PIDIIEKLLDEAEDVLPQLEE-AYKGDRPDLIVYDIASWTGRLLA-RKWDVPVISSFPTFAAN----EEFEEMVS----P 135 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HhcCCCCCEEEECCccHHHHHHH-HHhCCCEEEEehhhccc----cccccccc----c
Confidence 122122222222223322222 22234899999999888888888 99999999986543211 00010000 0
Q ss_pred ccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhh-------h--cccceEEEcCchhhhHHHHHHHHcccC
Q 042987 166 FRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQ-------M--AKSAGVIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~le~~~~~~~~~~~~ 236 (481)
.. +.+. .................+.+++.... . ......+..+.+.++
T Consensus 136 ~~---------~~~~--~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~------------ 192 (392)
T TIGR01426 136 AG---------EGSA--EEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQ------------ 192 (392)
T ss_pred cc---------hhhh--hhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhC------------
Confidence 00 0000 00000000000000001111111000 0 000001121111111
Q ss_pred CCCCCC-CCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeC
Q 042987 237 TPGETS-PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 237 ~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 315 (481)
++...+ ++++++||+...... ...|....+++++||||+||+.......+..+++++.+.+.++||.++.
T Consensus 193 ~~~~~~~~~~~~~Gp~~~~~~~---------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~ 263 (392)
T TIGR01426 193 PAGETFDDSFTFVGPCIGDRKE---------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGR 263 (392)
T ss_pred CCccccCCCeEEECCCCCCccc---------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECC
Confidence 112233 579999998764321 2236666666779999999987666778888999999999999998865
Q ss_pred CCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHH
Q 042987 316 PAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMI 395 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~n 395 (481)
... ...+. ..++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.|
T Consensus 264 ~~~-------------~~~~~--~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~ 326 (392)
T TIGR01426 264 GVD-------------PADLG--ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMT 326 (392)
T ss_pred CCC-------------hhHhc--cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHH
Confidence 310 01111 12358888899999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042987 396 RAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 396 a~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 472 (481)
|++++ ++|+|+.+...+ +++++|.++|+++|+|++ |+++++++++.+++ .+|.. ++.+.+.+.+
T Consensus 327 a~~l~-~~g~g~~l~~~~-----~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~---~~~~~-~aa~~i~~~~ 390 (392)
T TIGR01426 327 ARRIA-ELGLGRHLPPEE-----VTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE---AGGAR-RAADEIEGFL 390 (392)
T ss_pred HHHHH-HCCCEEEecccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH---cCCHH-HHHHHHHHhh
Confidence 99995 679999998877 899999999999999987 99999999999984 35554 5666665543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.1e-42 Score=346.81 Aligned_cols=384 Identities=16% Similarity=0.162 Sum_probs=238.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC-
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS- 82 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~- 82 (481)
||+|+++|+.||++|+++||++|+++| |+|+|+++.. ++..++. .|++|..++............
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rG--h~V~~~t~~~-------~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAG--HEVRVATPPE-------FADLVEA-----AGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCC--CeEEEeeCHh-------HHHHHHH-----cCCceeeCCCCHHHHHhhhhhc
Confidence 699999999999999999999999999 9999998773 3334444 388998887642210000000
Q ss_pred -------CCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhh
Q 042987 83 -------PADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (481)
Q Consensus 83 -------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~ 155 (481)
..........+.......++.+++.+ ++.+||+||+|.++.++..+| +++|||++.+++++........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pDlvi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~~~~~~-- 143 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAA-RDWGPDLVVADPLAFAGAVAA-EALGIPAVRLLLGPDTPTSAFP-- 143 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCEEEeCcHHHHHHHHH-HHhCCCeEEeecccCCccccCC--
Confidence 00111111112222233333333322 224999999999888887888 9999999999887643211100
Q ss_pred cccccccCccccccCcccccCCCCCCCCc-ccCCCcccCCCchHHHHHHHHHhhhcccceEEEcC-chhhhHHHHHHHHc
Q 042987 156 PTLHKNTTKSFRELGSTLLNFPGFPPFPA-RDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNT-FELLEERAIKAMLE 233 (481)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~~~~~~~~ 233 (481)
| +... ......... ...+...+........+..++-... +..........+..
T Consensus 144 ~------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 198 (401)
T cd03784 144 P------------------------PLGRANLRLYALLE-AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSP 198 (401)
T ss_pred C------------------------ccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCc
Confidence 0 0000 000000000 0000001111111111111110000 00000000001111
Q ss_pred ccCCCCCCC-CCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCH-HHHHHHHHHHHhCCCeEE
Q 042987 234 GQCTPGETS-PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSS-KQLKEMAIGLERSGVKFL 310 (481)
Q Consensus 234 ~~~~~~~~~-~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i 310 (481)
.+..+...+ ++..++| ++...... . ..+.++..|++.. +++|||++||+..... ..+..++++++..+.++|
T Consensus 199 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i 273 (401)
T cd03784 199 AVLPPPPDWPRFDLVTGYGFRDVPYN-G--PPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAI 273 (401)
T ss_pred ccCCCCCCccccCcEeCCCCCCCCCC-C--CCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEE
Confidence 111122233 3566775 44332221 1 4567788888764 4599999999986554 456779999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc
Q 042987 311 WVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~ 390 (481)
|+++.... . . ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..
T Consensus 274 ~~~g~~~~----------~---~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 274 LSLGWGGL----------G---A----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred EEccCccc----------c---c----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 99876410 0 0 112458989999999999999999 999999999999999999999999999
Q ss_pred chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 391 EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
||+.||++++ ++|+|+.+...+ ++.++|.++|+++++++ ++++++++++++++ ++|.. ..++.+
T Consensus 335 dQ~~~a~~~~-~~G~g~~l~~~~-----~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~---~~g~~-~~~~~i 398 (401)
T cd03784 335 DQPFWAARVA-ELGAGPALDPRE-----LTAERLAAALRRLLDPP----SRRRAAALLRRIRE---EDGVP-SAADVI 398 (401)
T ss_pred CcHHHHHHHH-HCCCCCCCCccc-----CCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh---ccCHH-HHHHHH
Confidence 9999999995 679999998877 89999999999999854 66777777777753 34543 444433
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=9e-40 Score=320.11 Aligned_cols=386 Identities=21% Similarity=0.258 Sum_probs=241.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCC-
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLR- 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~- 81 (481)
+||+++..|+.||++|+++||++|.++| |+|+|+++. .|+..++.. |+.|...+..+. +....
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~g--heV~~~~~~-------~~~~~ve~a-----g~~f~~~~~~~~--~~~~~~ 65 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRG--HEVVFASTG-------KFKEFVEAA-----GLAFVAYPIRDS--ELATED 65 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcC--CeEEEEeCH-------HHHHHHHHh-----CcceeeccccCC--hhhhhh
Confidence 5799999999999999999999999999 999999877 556666665 677777765411 11111
Q ss_pred CCCCchHHHHHHHH---hhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHh-hhcc
Q 042987 82 SPADFPALVYELGE---LNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANL-YLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~-~~p~ 157 (481)
........+..... .......+++.+. .+|+|+.|...+.+ .++ +..++|++....+..+...... +.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T COG1819 66 GKFAGVKSFRRLLQQFKKLIRELLELLREL----EPDLVVDDARLSLG-LAA-RLLGIPVVGINVAPYTPLPAAGLPLPP 139 (406)
T ss_pred hhhhccchhHHHhhhhhhhhHHHHHHHHhc----chhhhhcchhhhhh-hhh-hhcccchhhhhhhhccCCcccccCccc
Confidence 10111111111111 2233344445555 89999998655544 667 9999999987665543321111 0010
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccC-CCchHHHHHHHHHhhhcccceEEEc-------CchhhhHHHHH
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHD-REGKVYKGLVDTGIQMAKSAGVIVN-------TFELLEERAIK 229 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~le~~~~~ 229 (481)
.. . .+....+...++..... ....... ................+ +-..++.
T Consensus 140 ~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (406)
T COG1819 140 VG-------I---------AGKLPIPLYPLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEI---- 198 (406)
T ss_pred cc-------c---------cccccccccccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccc----
Confidence 00 0 00000011101100000 0000000 00000000000001010 0011111
Q ss_pred HHHcccCCCCCCCC-CeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCe
Q 042987 230 AMLEGQCTPGETSP-PLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK 308 (481)
Q Consensus 230 ~~~~~~~~~~~~~~-~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 308 (481)
...+..+.|++..| ...++||+..... .+...|... ++++||||+||.... .+.++.+++++...+.+
T Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~ 267 (406)
T COG1819 199 AYTDVLFPPGDRLPFIGPYIGPLLGEAA--------NELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVR 267 (406)
T ss_pred cccccccCCCCCCCCCcCcccccccccc--------ccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcE
Confidence 01111111211122 4566677666433 233344333 345999999999866 78899999999999999
Q ss_pred EEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc
Q 042987 309 FLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~ 388 (481)
+|..++.. .. ....+| .|+.+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|.
T Consensus 268 vi~~~~~~-~~-------~~~~~p---------~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~ 328 (406)
T COG1819 268 VIVSLGGA-RD-------TLVNVP---------DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPD 328 (406)
T ss_pred EEEecccc-cc-------ccccCC---------CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecC
Confidence 99998652 10 112233 48889999999999999999 9999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 389 YAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 389 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
..||+.||.|+ +++|+|+.+.... ++.+.|+++|+++|+|+. |+++++++++.+++. +| . +.+.++
T Consensus 329 ~~DQ~~nA~rv-e~~G~G~~l~~~~-----l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~~---~g-~-~~~a~~ 394 (406)
T COG1819 329 GADQPLNAERV-EELGAGIALPFEE-----LTEERLRAAVNEVLADDS---YRRAAERLAEEFKEE---DG-P-AKAADL 394 (406)
T ss_pred CcchhHHHHHH-HHcCCceecCccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhhc---cc-H-HHHHHH
Confidence 99999999999 5779999999988 999999999999999998 999999999999953 66 3 445555
Q ss_pred HHHHHhc
Q 042987 469 VESFKRG 475 (481)
Q Consensus 469 ~~~~~~~ 475 (481)
+++..+.
T Consensus 395 le~~~~~ 401 (406)
T COG1819 395 LEEFARE 401 (406)
T ss_pred HHHHHhc
Confidence 5554433
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.2e-40 Score=341.11 Aligned_cols=411 Identities=26% Similarity=0.433 Sum_probs=242.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhcc-CCCCCeeEEEcCCCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVS-ATAPSVTFHQLPPPVSGLPDTLR 81 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~l~~~~~ 81 (481)
.|++++++|++||++|++.||++|+++| |+||++++....... .......... .......+.... +. ++....
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~g--h~vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~ 79 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERG--HNVTVVTPSFNALKL-SKSSKSKSIKKINPPPFEFLTIP--DG-LPEGWE 79 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcC--CceEEEEeechhccc-CCcccceeeeeeecChHHhhhhh--hh-hccchH
Confidence 4889999999999999999999999999 999999876443321 0000000000 000011111111 00 222111
Q ss_pred CCC-CchHHHHHHHHhhhHHHHHHHHHhhc--cCCccEEEECCCCcchHHhhhhhc-CCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPA-DFPALVYELGELNNPKLHETLITISK--RSNLKAFVIDFFCNPAFQVSSSTL-SIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~pD~VI~D~~~~~~~~~A~~~l-giP~v~~~~~~~~~~~~~~~~p~ 157 (481)
... ............+...++..+..... ..++|++|+|.+..+...++ ... +++..++++.++.......+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 80 DDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLA-IPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhc-ccceEEEeecccCchHHHHhcCCcCcc
Confidence 100 01111222333333444443333221 12499999999766666667 565 48888888877766544433222
Q ss_pred cccccCccccccCcccccCCCCC-CCCcccCCCcccCCCc-hHHHHHHH-HHhh----hcccceEEEcC-chhhhHHHHH
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFP-PFPARDMALPMHDREG-KVYKGLVD-TGIQ----MAKSAGVIVNT-FELLEERAIK 229 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~~~~-~~~le~~~~~ 229 (481)
.. .+............+++.. ++....++........ ........ .... ......++.++ +..++.....
T Consensus 159 ~~--~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SY--VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cc--cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 10 0000000000000000000 0000000000000000 00000000 0000 01111333333 4444443221
Q ss_pred HHHcccCCCCCC-CCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCC--cEEEEecCCCc---CCCHHHHHHHHHHHH
Q 042987 230 AMLEGQCTPGET-SPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSR--SVLFLCFGSLG---SFSSKQLKEMAIGLE 303 (481)
Q Consensus 230 ~~~~~~~~~~~~-~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~~~~al~ 303 (481)
.++.++ .+++++|||+....... ..+.+.+|++..+.. ++|||||||+. ..+.++..+++.+++
T Consensus 237 ------~~~~~~~~~~v~~IG~l~~~~~~~----~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~ 306 (496)
T KOG1192|consen 237 ------DFEPRPLLPKVIPIGPLHVKDSKQ----KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALE 306 (496)
T ss_pred ------CCCCCCCCCCceEECcEEecCccc----cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHH
Confidence 111222 38999999999873321 112456676665554 79999999998 789999999999999
Q ss_pred hC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhh-hcccCcceeeeccCchhHHHhHhcCC
Q 042987 304 RS-GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV-LNHESVGGFVTHCGWNSVLEGVCAGV 381 (481)
Q Consensus 304 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~l-l~~~~~~~~I~HgG~gt~~eal~~Gv 381 (481)
++ ++.|||++.... ...+++++.++ ...||+..+|+||.++ |+|+++++||||||||||+|++++||
T Consensus 307 ~~~~~~FiW~~~~~~----------~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~Gv 375 (496)
T KOG1192|consen 307 SLQGVTFLWKYRPDD----------SIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGV 375 (496)
T ss_pred hCCCceEEEEecCCc----------chhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCC
Confidence 99 999999998641 11133344333 3457888899999998 69999999999999999999999999
Q ss_pred cEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 042987 382 PMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAA 452 (481)
Q Consensus 382 P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~ 452 (481)
|+|++|+++||+.||++++++ |.|..+...+ ++...+.+++.+++++++ |+++++++++..+
T Consensus 376 P~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~-----~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 376 PMVCVPLFGDQPLNARLLVRH-GGGGVLDKRD-----LVSEELLEAIKEILENEE---YKEAAKRLSEILR 437 (496)
T ss_pred ceecCCccccchhHHHHHHhC-CCEEEEehhh-----cCcHHHHHHHHHHHcChH---HHHHHHHHHHHHH
Confidence 999999999999999999877 6666665555 556559999999999998 9999999999887
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=1.6e-26 Score=223.86 Aligned_cols=323 Identities=15% Similarity=0.143 Sum_probs=200.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLR 81 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (481)
+++|++.+.|+.||++|.++||++|.++| |+|+|++.....+.. .++. .++.+..++.. . +..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e~~-----l~~~-----~g~~~~~~~~~-~-l~~--- 63 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDN--WDISYIGSHQGIEKT-----IIEK-----ENIPYYSISSG-K-LRR--- 63 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCC--CEEEEEECCCccccc-----cCcc-----cCCcEEEEecc-C-cCC---
Confidence 14899999999999999999999999999 999999755432221 2222 26777777632 1 221
Q ss_pred CCCCchHHHHHHHHh--hhHHHHHHHHHhhccCCccEEEECCCCc-c-hHHhhhhhcCCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPADFPALVYELGEL--NNPKLHETLITISKRSNLKAFVIDFFCN-P-AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~pD~VI~D~~~~-~-~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~ 157 (481)
......+....+. ..-....++++. +||+||...... . +..+| ..+++|++..-...
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~i~~~~----kPdvvi~~Ggy~s~p~~~aa-~~~~~p~~i~e~n~------------ 124 (352)
T PRK12446 64 --YFDLKNIKDPFLVMKGVMDAYVRIRKL----KPDVIFSKGGFVSVPVVIGG-WLNRVPVLLHESDM------------ 124 (352)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEecCchhhHHHHHHH-HHcCCCEEEECCCC------------
Confidence 1111122222211 223344556666 999999865332 2 34455 99999998853311
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCC
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 237 (481)
+||+. +.+. .+..+. +..+|++... .+
T Consensus 125 ------------------~~g~~---------------nr~~---------~~~a~~-v~~~f~~~~~----------~~ 151 (352)
T PRK12446 125 ------------------TPGLA---------------NKIA---------LRFASK-IFVTFEEAAK----------HL 151 (352)
T ss_pred ------------------CccHH---------------HHHH---------HHhhCE-EEEEccchhh----------hC
Confidence 11110 0000 111122 2333432111 01
Q ss_pred CCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHH-HHHHHHHHHhCCCeEEEEEeCC
Q 042987 238 PGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 238 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~ 316 (481)
+. .++.++|+.+...-.. .......+.+.-.+++++|+|..||+.....++ +..++..+.. +.+++|++|..
T Consensus 152 ~~---~k~~~tG~Pvr~~~~~---~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~ 224 (352)
T PRK12446 152 PK---EKVIYTGSPVREEVLK---GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG 224 (352)
T ss_pred CC---CCeEEECCcCCccccc---ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc
Confidence 11 4788999555432211 111122222333345669999999998655544 4445544432 47889998863
Q ss_pred CCCCccccccccccCchhhHhhhcCCCeEeeccc-c-hhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc-----
Q 042987 317 APDSIENRSSLESLLPEGFLDRTKDRGLVVESWA-P-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY----- 389 (481)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~-p-~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~----- 389 (481)
. +.+ .... ..++.+.+|+ + -.+++.++++ +|||||.+|++|++++|+|+|++|+.
T Consensus 225 ~-------------~~~-~~~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 225 N-------------LDD-SLQN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred h-------------HHH-HHhh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 1 001 0111 1244455777 4 3469999999 99999999999999999999999984
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVA 446 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~ 446 (481)
.||..||..++ +.|+|..+...+ ++++.|.+++.++++|++ .|++++++
T Consensus 287 ~~Q~~Na~~l~-~~g~~~~l~~~~-----~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 287 GDQILNAESFE-RQGYASVLYEED-----VTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred chHHHHHHHHH-HCCCEEEcchhc-----CCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 48999999996 569999998888 999999999999998764 25554444
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=8.8e-24 Score=202.03 Aligned_cols=326 Identities=14% Similarity=0.176 Sum_probs=207.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCF-SIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS 82 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (481)
+|++...++.||++|.++|+++|.++| + +|.+..+....+.. .....++.|+.++.. . +...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g--~~~v~~~~~~~~~e~~----------l~~~~~~~~~~I~~~-~-~~~~--- 64 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG--WEQVIVLGTGDGLEAF----------LVKQYGIEFELIPSG-G-LRRK--- 64 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC--ccEEEEecccccceee----------eccccCceEEEEecc-c-cccc---
Confidence 589999999999999999999999999 7 57777443332211 122337788888753 1 1211
Q ss_pred CCCchHHHHHHHH--hhhHHHHHHHHHhhccCCccEEEECC-CCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccc
Q 042987 83 PADFPALVYELGE--LNNPKLHETLITISKRSNLKAFVIDF-FCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (481)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~pD~VI~D~-~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 159 (481)
.....+...+. ......+.++++. +||+||.-. +.+....+||..+|||.+..-+
T Consensus 65 --~~~~~~~~~~~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq---------------- 122 (357)
T COG0707 65 --GSLKLLKAPFKLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ---------------- 122 (357)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHHHhCCCCEEEEec----------------
Confidence 11111221122 2455677888888 999999744 3333444444999999999633
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCC
Q 042987 160 KNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPG 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 239 (481)
..+||+.+ ....+....+..+|+..+. ..+.
T Consensus 123 --------------n~~~G~an-------------------------k~~~~~a~~V~~~f~~~~~----------~~~~ 153 (357)
T COG0707 123 --------------NAVPGLAN-------------------------KILSKFAKKVASAFPKLEA----------GVKP 153 (357)
T ss_pred --------------CCCcchhH-------------------------HHhHHhhceeeeccccccc----------cCCC
Confidence 11222211 0001111122233332111 0001
Q ss_pred CCCCCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHH-HHHHHHHHHhCCCeEEEEEeCCC
Q 042987 240 ETSPPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRAPA 317 (481)
Q Consensus 240 ~~~~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~ 317 (481)
.++.++| |+...... .+..-..... ..++.+|+|..||+.....++ +..++..+.+ +..+++.+|.+.
T Consensus 154 ---~~~~~tG~Pvr~~~~~-----~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~ 223 (357)
T COG0707 154 ---ENVVVTGIPVRPEFEE-----LPAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND 223 (357)
T ss_pred ---CceEEecCcccHHhhc-----cchhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch
Confidence 3688898 66553321 0111111111 114559999999998554443 4445555544 578888877641
Q ss_pred CCCccccccccccCchhhHhhhcCCC-eEeecccchh-hhhcccCcceeeeccCchhHHHhHhcCCcEEecccc----cc
Q 042987 318 PDSIENRSSLESLLPEGFLDRTKDRG-LVVESWAPQV-EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY----AE 391 (481)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~~-v~v~~~~p~~-~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~----~D 391 (481)
.+.........| +.+..|..++ .++..+|+ +||++|.+|+.|++++|+|+|.+|+. .|
T Consensus 224 --------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 224 --------------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred --------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccch
Confidence 122333333334 6777888876 49999999 99999999999999999999999983 38
Q ss_pred hhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Q 042987 392 QKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKE 449 (481)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~ 449 (481)
|..||..++ +.|.|..++..+ +|.+++.+.|.+++++++ .+.|+++++++..
T Consensus 288 Q~~NA~~l~-~~gaa~~i~~~~-----lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~ 340 (357)
T COG0707 288 QEYNAKFLE-KAGAALVIRQSE-----LTPEKLAELILRLLSNPEKLKAMAENAKKLGK 340 (357)
T ss_pred HHHHHHHHH-hCCCEEEecccc-----CCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999999996 559999999998 999999999999999855 4566666665544
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=6.3e-23 Score=198.00 Aligned_cols=302 Identities=15% Similarity=0.193 Sum_probs=183.3
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC
Q 042987 4 TIVFYTSP-GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS 82 (481)
Q Consensus 4 ~il~~~~p-~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (481)
||++...+ +.||+...++||++| +| |+|+|++.....+ .+. +.+....++... ... ...
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg--~~v~~~~~~~~~~-------~~~------~~~~~~~~~~~~--~~~-~~~ 61 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RG--HEVTFITSGPAPE-------FLK------PRFPVREIPGLG--PIQ-ENG 61 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--cc--CceEEEEcCCcHH-------Hhc------cccCEEEccCce--Eec-cCC
Confidence 58888776 999999999999999 59 9999998763321 111 112333343221 011 111
Q ss_pred CCCchHHHHHH------HHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhc
Q 042987 83 PADFPALVYEL------GELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (481)
Q Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p 156 (481)
..+....+... .......+.+.+++. +||+||+|. .+.+..+| +..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~pDlVIsD~-~~~~~~aa-~~~giP~i~i~~~~~~~~------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREF----RPDLVISDF-YPLAALAA-RRAGIPVIVISNQYWFLH------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCEEEEcC-hHHHHHHH-HhcCCCEEEEEehHHccc-------
Confidence 11222212111 122333344444444 999999994 44456677 999999999876543220
Q ss_pred ccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHh--hhcccceEEEcCchhhhHHHHHHHHcc
Q 042987 157 TLHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGI--QMAKSAGVIVNTFELLEERAIKAMLEG 234 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~le~~~~~~~~~~ 234 (481)
+.. .++ ..........+... ........+.-++. ..
T Consensus 129 --------------------~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---------- 166 (318)
T PF13528_consen 129 --------------------PNF------WLP-----WDQDFGRLIERYIDRYHFPPADRRLALSFY-PP---------- 166 (318)
T ss_pred --------------------ccC------Ccc-----hhhhHHHHHHHhhhhccCCcccceecCCcc-cc----------
Confidence 000 000 00000111111111 12222223332332 10
Q ss_pred cCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCC-CeEEEEE
Q 042987 235 QCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSG-VKFLWVV 313 (481)
Q Consensus 235 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~ 313 (481)
.....++.++||+........ + . .++..|+|++|+.... .++++++..+ ..|++.
T Consensus 167 ----~~~~~~~~~~~p~~~~~~~~~----~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~- 222 (318)
T PF13528_consen 167 ----LPPFFRVPFVGPIIRPEIREL----P-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF- 222 (318)
T ss_pred ----ccccccccccCchhccccccc----C-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-
Confidence 000135667888876433211 0 1 1234899999998632 6667777766 566655
Q ss_pred eCCCCCCccccccccccCchhhHhhhcCCCeEeeccc--chhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc--c
Q 042987 314 RAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWA--PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL--Y 389 (481)
Q Consensus 314 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~--p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~--~ 389 (481)
+... .....+|+.+..+. ...++|..+++ +|+|||+||++|++++|+|+|++|. .
T Consensus 223 g~~~-------------------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~ 281 (318)
T PF13528_consen 223 GPNA-------------------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQ 281 (318)
T ss_pred cCCc-------------------ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 4421 01124588887876 34569999999 9999999999999999999999999 7
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
.||..||+++ +++|+|+.+...+ ++++.|+++|+++
T Consensus 282 ~EQ~~~a~~l-~~~G~~~~~~~~~-----~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 282 DEQEYNARKL-EELGLGIVLSQED-----LTPERLAEFLERL 317 (318)
T ss_pred chHHHHHHHH-HHCCCeEEccccc-----CCHHHHHHHHhcC
Confidence 8999999999 5779999998888 9999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.9e-21 Score=187.24 Aligned_cols=124 Identities=14% Similarity=0.232 Sum_probs=90.2
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccc--hhhh
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAP--QVEV 355 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p--~~~l 355 (481)
+.|+|.+||.. ...+++++++.+. +.++++... .....+ .+|+.+.+|.| ..++
T Consensus 189 ~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~--------~~~~~~---------~~~v~~~~~~~~~~~~~ 244 (321)
T TIGR00661 189 DYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE--------VAKNSY---------NENVEIRRITTDNFKEL 244 (321)
T ss_pred CcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC--------CCcccc---------CCCEEEEECChHHHHHH
Confidence 37888888854 3456777777653 223333210 000111 24787889997 3467
Q ss_pred hcccCcceeeeccCchhHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 356 l~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
|..+++ +|||||++|++|++++|+|+|++|... ||..||+.++ +.|+|+.+...+ + ++.+++.++++
T Consensus 245 l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~~-----~---~~~~~~~~~~~ 313 (321)
T TIGR00661 245 IKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYKE-----L---RLLEAILDIRN 313 (321)
T ss_pred HHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChhh-----H---HHHHHHHhccc
Confidence 888888 999999999999999999999999954 8999999995 669999998866 4 66667777777
Q ss_pred Cch
Q 042987 434 SEK 436 (481)
Q Consensus 434 ~~~ 436 (481)
|+.
T Consensus 314 ~~~ 316 (321)
T TIGR00661 314 MKR 316 (321)
T ss_pred ccc
Confidence 765
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=5.4e-18 Score=166.33 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=196.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLR 81 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (481)
.++|+++..+..||+...+.|+++|.++| |+|++++........ .. ...++.++.++.. . +..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~~-----~~-----~~~g~~~~~~~~~-~-~~~--- 63 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRG--WEVLYLGTARGMEAR-----LV-----PKAGIEFHFIPSG-G-LRR--- 63 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCC--CEEEEEECCCchhhh-----cc-----ccCCCcEEEEecc-C-cCC---
Confidence 06799999999999999999999999999 999999764321000 11 1126666666532 1 110
Q ss_pred CCCCchHHHHHHH--HhhhHHHHHHHHHhhccCCccEEEECCC-Ccc-hHHhhhhhcCCceEEEeccchhhHhhHhhhcc
Q 042987 82 SPADFPALVYELG--ELNNPKLHETLITISKRSNLKAFVIDFF-CNP-AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~pD~VI~D~~-~~~-~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~ 157 (481)
......+.... -.....+.+++++. +||+|++... ..+ +..++ ...++|++..... .
T Consensus 64 --~~~~~~l~~~~~~~~~~~~~~~~ik~~----~pDvv~~~~~~~~~~~~~~~-~~~~~p~v~~~~~-~----------- 124 (357)
T PRK00726 64 --KGSLANLKAPFKLLKGVLQARKILKRF----KPDVVVGFGGYVSGPGGLAA-RLLGIPLVIHEQN-A----------- 124 (357)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCcchhHHHHHH-HHcCCCEEEEcCC-C-----------
Confidence 11111111111 12333455566665 9999998863 233 33345 8889999853110 0
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCC
Q 042987 158 LHKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 237 (481)
.++ ..+.+ .....+.++..+...+. . .
T Consensus 125 ------------------~~~-------------------~~~r~-----~~~~~d~ii~~~~~~~~--------~---~ 151 (357)
T PRK00726 125 ------------------VPG-------------------LANKL-----LARFAKKVATAFPGAFP--------E---F 151 (357)
T ss_pred ------------------Ccc-------------------HHHHH-----HHHHhchheECchhhhh--------c---c
Confidence 000 00000 01123334333221110 0 1
Q ss_pred CCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHH-HHHHHHhCCC--eEEEEEe
Q 042987 238 PGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKE-MAIGLERSGV--KFLWVVR 314 (481)
Q Consensus 238 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~ 314 (481)
++ .++.++|+.+...... . + ....-+...++..+|++..|+.. ...+.. +.+++++... .++|.+|
T Consensus 152 ~~---~~i~vi~n~v~~~~~~---~-~-~~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G 220 (357)
T PRK00726 152 FK---PKAVVTGNPVREEILA---L-A-APPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTG 220 (357)
T ss_pred CC---CCEEEECCCCChHhhc---c-c-chhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcC
Confidence 11 6788898555432211 0 0 01111121223336676656643 222222 3355555432 4456666
Q ss_pred CCCCCCccccccccccCchhhHhhh-cCCCeEeecccc-hhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc----
Q 042987 315 APAPDSIENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL---- 388 (481)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~v~~~~p-~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~---- 388 (481)
.+. . +.+.+.. ..-++.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|.
T Consensus 221 ~g~----------~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~ 284 (357)
T PRK00726 221 KGD----------L----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAA 284 (357)
T ss_pred CCc----------H----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCC
Confidence 531 1 1222222 111367778884 4679999999 9999999999999999999999997
Q ss_pred ccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 389 YAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 389 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
..||..|+..+.+ .|.|+.++..+ ++++.|.++|.++++|++ ++++..+-+.+.. +.++..+.++.+
T Consensus 285 ~~~~~~~~~~i~~-~~~g~~~~~~~-----~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~ 351 (357)
T PRK00726 285 DDHQTANARALVD-AGAALLIPQSD-----LTPEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDAAERLADLI 351 (357)
T ss_pred cCcHHHHHHHHHH-CCCEEEEEccc-----CCHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCHHHHHHHHH
Confidence 3689999999964 59999998877 789999999999999887 5544333333221 234443566666
Q ss_pred HHHHH
Q 042987 469 VESFK 473 (481)
Q Consensus 469 ~~~~~ 473 (481)
++.++
T Consensus 352 ~~~~~ 356 (357)
T PRK00726 352 EELAR 356 (357)
T ss_pred HHHhh
Confidence 55544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=1.9e-16 Score=154.94 Aligned_cols=316 Identities=14% Similarity=0.127 Sum_probs=184.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSP 83 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (481)
||++.+.++.||+...+.|+++|.++| |+|++++....... .... ..+++++.++.. . ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~-----~~~~-----~~~~~~~~~~~~-~-~~~----- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG--AEVLFLGTKRGLEA-----RLVP-----KAGIPLHTIPVG-G-LRR----- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC--CEEEEEECCCcchh-----hccc-----ccCCceEEEEec-C-cCC-----
Confidence 589999999999999999999999999 99999976532110 0111 125666666532 1 110
Q ss_pred CCchHHHHHHH--HhhhHHHHHHHHHhhccCCccEEEECCCC-c-chHHhhhhhcCCceEEEeccchhhHhhHhhhcccc
Q 042987 84 ADFPALVYELG--ELNNPKLHETLITISKRSNLKAFVIDFFC-N-PAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (481)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~pD~VI~D~~~-~-~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 159 (481)
......+.... -.....+.+++++. +||+|++.... . .+..+| ...|+|++.... ..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~i~~~----~pDvI~~~~~~~~~~~~~~a-~~~~~p~v~~~~-~~------------- 122 (350)
T cd03785 62 KGSLKKLKAPFKLLKGVLQARKILKKF----KPDVVVGFGGYVSGPVGLAA-KLLGIPLVIHEQ-NA------------- 122 (350)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCCcchHHHHHH-HHhCCCEEEEcC-CC-------------
Confidence 11111111111 11223455555655 99999986532 2 234455 889999885311 00
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCC
Q 042987 160 KNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPG 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 239 (481)
.++ ..+.+ .....+.++..+....+. +++
T Consensus 123 ----------------~~~-------------------~~~~~-----~~~~~~~vi~~s~~~~~~-----------~~~ 151 (350)
T cd03785 123 ----------------VPG-------------------LANRL-----LARFADRVALSFPETAKY-----------FPK 151 (350)
T ss_pred ----------------Ccc-------------------HHHHH-----HHHhhCEEEEcchhhhhc-----------CCC
Confidence 000 00000 112245555544332221 111
Q ss_pred CCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHH-HHHHHHHHHHhCCCeEEEEEeCCCC
Q 042987 240 ETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSK-QLKEMAIGLERSGVKFLWVVRAPAP 318 (481)
Q Consensus 240 ~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~ 318 (481)
.++.++|........ ...+. .+.+...+++.+|++..|+....... .+..++..+.+.+..+++.+|...
T Consensus 152 ---~~~~~i~n~v~~~~~----~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~- 222 (350)
T cd03785 152 ---DKAVVTGNPVREEIL----ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD- 222 (350)
T ss_pred ---CcEEEECCCCchHHh----hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-
Confidence 568888854432111 00111 22222223344666666665422221 222344444434455666665430
Q ss_pred CCccccccccccCchhhHhhhcCCCeEeeccc-chhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc----ccchh
Q 042987 319 DSIENRSSLESLLPEGFLDRTKDRGLVVESWA-PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAEQK 393 (481)
Q Consensus 319 ~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~-p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~----~~DQ~ 393 (481)
...+.+.. +.. .+|+.+.+|+ ...++|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|.
T Consensus 223 ---------~~~l~~~~-~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 223 ---------LEEVKKAY-EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred ---------HHHHHHHH-hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 11111111 111 3588888998 45679999999 9999999999999999999999986 46799
Q ss_pred HHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 394 MIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 394 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
.|+..+.+ .|.|..++..+ .+.+++.++|.++++|++
T Consensus 290 ~~~~~l~~-~g~g~~v~~~~-----~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 290 ANARALVK-AGAAVLIPQEE-----LTPERLAAALLELLSDPE 326 (350)
T ss_pred HhHHHHHh-CCCEEEEecCC-----CCHHHHHHHHHHHhcCHH
Confidence 99999964 59999998765 689999999999998776
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=2.2e-16 Score=155.40 Aligned_cols=352 Identities=14% Similarity=0.075 Sum_probs=188.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRS 82 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (481)
++|++.+.++.||++|. +|+++|++++ ++|+|+..... ..+... ....+.+..++.. +..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~--~~~~~~g~gg~---------~m~~~g-~~~~~~~~~l~v~------G~~- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHY--PNARFIGVAGP---------RMAAEG-CEVLYSMEELSVM------GLR- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcC--CCcEEEEEccH---------HHHhCc-CccccChHHhhhc------cHH-
Confidence 48999999999999999 9999999999 88888864422 111110 0001222222210 000
Q ss_pred CCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHh--hhhhcCCceEEEeccchhhHhhHhhhccccc
Q 042987 83 PADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQV--SSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~--A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 160 (481)
+....+... ........+++++. +||+||.-....+...+ ||+.+|||++.+.+ | .
T Consensus 66 --~~l~~~~~~-~~~~~~~~~~l~~~----kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P-----------~--- 123 (385)
T TIGR00215 66 --EVLGRLGRL-LKIRKEVVQLAKQA----KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-P-----------Q--- 123 (385)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHHhc----CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-C-----------c---
Confidence 111111111 12333555556665 99999953333333222 44999999997532 1 0
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCC
Q 042987 161 NTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGE 240 (481)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 240 (481)
.+.+++ . .+..+. ...+.+++. ++. +.+. +... +
T Consensus 124 ------------~waw~~--------------~-~~r~l~---------~~~d~v~~~-~~~-e~~~---~~~~----g- 157 (385)
T TIGR00215 124 ------------VWAWRK--------------W-RAKKIE---------KATDFLLAI-LPF-EKAF---YQKK----N- 157 (385)
T ss_pred ------------HhhcCc--------------c-hHHHHH---------HHHhHhhcc-CCC-cHHH---HHhc----C-
Confidence 000000 0 011111 112222222 221 2111 1111 1
Q ss_pred CCCCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhC-----CCeEEEEEe
Q 042987 241 TSPPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS-----GVKFLWVVR 314 (481)
Q Consensus 241 ~~~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 314 (481)
.+..+|| |+........ ....+..+-+.-.+++++|.+..||....-...+..++++++.. +.++++...
T Consensus 158 --~~~~~vGnPv~~~~~~~~--~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 158 --VPCRFVGHPLLDAIPLYK--PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred --CCEEEECCchhhhccccC--CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 3677899 5543221100 11222222233233455888888887643223344455544432 345555443
Q ss_pred CCCCCCccccccccccCchhhHhhhc-CCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEec----ccc
Q 042987 315 APAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW----PLY 389 (481)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~----P~~ 389 (481)
... . ...+ +.+.+... ...+....+ ....++..+|+ +|+-+|..|+ |++++|+|+|++ |+.
T Consensus 234 ~~~-~--------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~ 299 (385)
T TIGR00215 234 NFK-R--------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLT 299 (385)
T ss_pred Cch-h--------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHH
Confidence 210 0 0000 11111111 112322222 23458899999 9999999888 999999999999 874
Q ss_pred c---------chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHh
Q 042987 390 A---------EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE----KGRAVKERAVAMKEAAAAAMR 456 (481)
Q Consensus 390 ~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~~~~a~~l~~~~~~~~~ 456 (481)
. +|..|+..++.+ ++...+...+ .+++.|.+.+.++|+|+ + ++++.++--+++++.+.
T Consensus 300 ~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~~-----~~~~~l~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~l~ 370 (385)
T TIGR00215 300 FLIARRLVKTDYISLPNILANR-LLVPELLQEE-----CTPHPLAIALLLLLENGLKAYK---EMHRERQFFEELRQRIY 370 (385)
T ss_pred HHHHHHHHcCCeeeccHHhcCC-ccchhhcCCC-----CCHHHHHHHHHHHhcCCcccHH---HHHHHHHHHHHHHHHhc
Confidence 2 277899999655 8888888777 89999999999999998 6 44444444444444445
Q ss_pred cCCChHHHHHHHH
Q 042987 457 DGGSSRVALDNLV 469 (481)
Q Consensus 457 ~~g~~~~~~~~~~ 469 (481)
++|.+.++.+.++
T Consensus 371 ~~~~~~~~a~~i~ 383 (385)
T TIGR00215 371 CNADSERAAQAVL 383 (385)
T ss_pred CCCHHHHHHHHHh
Confidence 5677756665554
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=3.6e-15 Score=145.85 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=68.0
Q ss_pred chhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc---cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 351 PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY---AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 351 p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
...++|..+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+. ..|.|..++..+ .++++|.++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G~~~~~~~-----~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAGLVIRQKE-----LLPEKLLEA 314 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCEEEEeccc-----CCHHHHHHH
Confidence 45678999999 99999988999999999999999873 47888998885 569999888766 689999999
Q ss_pred HHHHhcCch
Q 042987 428 VSELMDSEK 436 (481)
Q Consensus 428 i~~~l~~~~ 436 (481)
+.++++|++
T Consensus 315 i~~ll~~~~ 323 (348)
T TIGR01133 315 LLKLLLDPA 323 (348)
T ss_pred HHHHHcCHH
Confidence 999998876
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=7.5e-15 Score=145.30 Aligned_cols=135 Identities=17% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCcEEEEecCCCcCCCHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCeEeecccch
Q 042987 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT--KDRGLVVESWAPQ 352 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~v~~~~p~ 352 (481)
++++|++..|+.... ..+..+++++.+. +.+++++.+.+. . +-+.+.+.. ..+++.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------~----~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------A----LKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------H----HHHHHHHHHhcCCCcEEEEechhh
Confidence 345777777887532 2355667777553 567776665420 0 111122111 1247888899987
Q ss_pred h-hhhcccCcceeeeccCchhHHHhHhcCCcEEec-ccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 353 V-EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 353 ~-~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
. +++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+. ..|.|+.. -+.+++.++|.+
T Consensus 267 ~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~-~~G~~~~~---------~~~~~l~~~i~~ 334 (380)
T PRK13609 267 IDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE-RKGAAVVI---------RDDEEVFAKTEA 334 (380)
T ss_pred HHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH-hCCcEEEE---------CCHHHHHHHHHH
Confidence 4 69999998 99999988999999999999985 67777888998885 44888753 257899999999
Q ss_pred HhcCch
Q 042987 431 LMDSEK 436 (481)
Q Consensus 431 ~l~~~~ 436 (481)
+++|++
T Consensus 335 ll~~~~ 340 (380)
T PRK13609 335 LLQDDM 340 (380)
T ss_pred HHCCHH
Confidence 999876
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.64 E-value=1.1e-13 Score=126.38 Aligned_cols=340 Identities=18% Similarity=0.166 Sum_probs=197.7
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhC--CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCC
Q 042987 3 DTIVFYTS--PGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPD 78 (481)
Q Consensus 3 ~~il~~~~--p~~GHv~P~l~La~~L~~~--G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 78 (481)
+||+|++. .+-||+...+.||.+|.+. | .+|++++..+..... ....+++|+.+|.-.. ..+
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~--~~Il~IsG~~~~~~F-----------~~~~gVd~V~LPsl~k-~~~ 75 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLG--FDILIISGGPPAGGF-----------PGPAGVDFVKLPSLIK-GDN 75 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccC--ceEEEEeCCCccCCC-----------CCcccCceEecCceEe-cCC
Confidence 38999998 5789999999999999999 8 999999877654321 1224899999986422 122
Q ss_pred CCCCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccc
Q 042987 79 TLRSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTL 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~ 158 (481)
+.....+.-....++.+.....+....+.+ +||++|+|. ++.++. . |.+ |... +. -.
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~~~f----kPDi~IVd~-~P~Glr-~-EL~--ptL~-----------yl--~~- 132 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTAETF----KPDIFIVDK-FPFGLR-F-ELL--PTLE-----------YL--KT- 132 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHHHhc----CCCEEEEec-cccchh-h-hhh--HHHH-----------HH--hh-
Confidence 221111111113344444455666666777 999999996 444421 2 111 1000 00 00
Q ss_pred ccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhh-cccceEEEcCchhhhHHHHHHHHcccCC
Q 042987 159 HKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQM-AKSAGVIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~~~ 237 (481)
.++ ..+-++. ..++.+.. ....|.+. ...+.+ .-.+.+++...+++.. +...+.+
T Consensus 133 --~~t----------~~vL~lr--~i~D~p~~---~~~~w~~~--~~~~~I~r~yD~V~v~GdP~f~d-----~~~~~~~ 188 (400)
T COG4671 133 --TGT----------RLVLGLR--SIRDIPQE---LEADWRRA--ETVRLINRFYDLVLVYGDPDFYD-----PLTEFPF 188 (400)
T ss_pred --cCC----------cceeehH--hhhhchhh---hccchhhh--HHHHHHHHhheEEEEecCccccC-----hhhcCCc
Confidence 000 0000000 00111111 11111000 000111 1234455544333322 1112211
Q ss_pred CCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh-CCCe--EEEEEe
Q 042987 238 PGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER-SGVK--FLWVVR 314 (481)
Q Consensus 238 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~~ 314 (481)
++....++.|+|.+-...+.. +.+ .. | .+++.-|+||-|.-. ...+.+...++|-.. .+.+ .+.++|
T Consensus 189 ~~~i~~k~~ytG~vq~~~~~~---~~p-~~--~---~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 189 APAIRAKMRYTGFVQRSLPHL---PLP-PH--E---APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred cHhhhhheeEeEEeeccCcCC---CCC-Cc--C---CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 121226899999883221110 111 11 1 134448888888754 345556666665544 3433 555555
Q ss_pred CCCCCCccccccccccCchhhHhhhc-----CCCeEeecccch-hhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc
Q 042987 315 APAPDSIENRSSLESLLPEGFLDRTK-----DRGLVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~~v~v~~~~p~-~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~ 388 (481)
.. +|+...++.. .+++.+..|-.+ .+++..++. +|+-||+||++|-|++|+|.|++|.
T Consensus 259 P~--------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr 322 (400)
T COG4671 259 PF--------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPR 322 (400)
T ss_pred CC--------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEecc
Confidence 43 5544333322 257888888765 468888998 9999999999999999999999999
Q ss_pred c---cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc
Q 042987 389 Y---AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 389 ~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~ 435 (481)
. -+|-.-|.|+ ++||+--.+-++. +++..+.++|...+.-+
T Consensus 323 ~~p~eEQliRA~Rl-~~LGL~dvL~pe~-----lt~~~La~al~~~l~~P 366 (400)
T COG4671 323 AAPREEQLIRAQRL-EELGLVDVLLPEN-----LTPQNLADALKAALARP 366 (400)
T ss_pred CCCcHHHHHHHHHH-HhcCcceeeCccc-----CChHHHHHHHHhcccCC
Confidence 5 4899999999 6889999998888 99999999999999733
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.64 E-value=4.7e-14 Score=139.67 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=70.3
Q ss_pred hhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc--------chhHH-----HHHHHHHhceeeEeecCCccCcc
Q 042987 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMI-----RAVVVEEMKVGLAVTRSEEKDRL 418 (481)
Q Consensus 352 ~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
-..++..+|+ +|+.+|.+++ |++++|+|+|+.|-.. +|..| +..++ .-+++..+....
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~----- 325 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLA-GRELVPELLQEE----- 325 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhc-CCCcchhhcCCC-----
Confidence 3568899999 9999998887 9999999999995432 22222 22232 213333344444
Q ss_pred cCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042987 419 VSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 419 ~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 473 (481)
.+++++.+++.++++|++ .+.|+++++++.+.+ ..|...+.++.+.+.+.
T Consensus 326 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 326 ATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELLK 376 (380)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhh
Confidence 789999999999999987 344555554444433 24555566666655543
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.62 E-value=6.2e-14 Score=131.61 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=77.2
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchh-
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAPQV- 353 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p~~- 353 (481)
+.|+|+||...... ....++++|.+. +.++.+++|.... ..+.+.+... ..|+.+..++++.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~------------~~~~l~~~~~~~~~i~~~~~~~~m~ 236 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP------------NLDELKKFAKEYPNIILFIDVENMA 236 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc------------CHHHHHHHHHhCCCEEEEeCHHHHH
Confidence 47899999765322 345566777653 5677788776411 1122222222 3478888999986
Q ss_pred hhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHH
Q 042987 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAV 398 (481)
Q Consensus 354 ~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~ 398 (481)
++|..+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 237 ~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 237 ELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 69999999 999999 9999999999999999999999999875
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=5e-13 Score=132.32 Aligned_cols=166 Identities=14% Similarity=0.234 Sum_probs=110.2
Q ss_pred CCCcEEEEecCCCcCCCHHHHHHHHHHH-Hh-CCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccc
Q 042987 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGL-ER-SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAP 351 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p 351 (481)
+++++|++..|+... ...+..+++++ +. .+.++++++|.+. .+-+.+.+... .+++.+.+|+.
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------------~l~~~l~~~~~~~~~v~~~G~~~ 265 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------------ELKRSLTAKFKSNENVLILGYTK 265 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------------HHHHHHHHHhccCCCeEEEeccc
Confidence 345588888898862 13344455553 32 3567766665430 01112222221 34778889997
Q ss_pred hh-hhhcccCcceeeeccCchhHHHhHhcCCcEEec-ccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHH
Q 042987 352 QV-EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 352 ~~-~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~ 429 (481)
+. +++..+|+ +|+..|..|+.||+++|+|+|++ |..++|..|+..+. ..|+|+.. -+.+++.++|.
T Consensus 266 ~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~-~~G~g~~~---------~~~~~l~~~i~ 333 (391)
T PRK13608 266 HMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFE-EKGFGKIA---------DTPEEAIKIVA 333 (391)
T ss_pred hHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHH-hCCcEEEe---------CCHHHHHHHHH
Confidence 64 59999999 99998888999999999999998 77677788999995 55999864 25788999999
Q ss_pred HHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042987 430 ELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 430 ~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (481)
++++|++ .+.|+++++++.+ ..+....++.+++.+.+
T Consensus 334 ~ll~~~~~~~~m~~~~~~~~~--------~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 334 SLTNGNEQLTNMISTMEQDKI--------KYATQTICRDLLDLIGH 371 (391)
T ss_pred HHhcCHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHhhh
Confidence 9998876 3444444444332 34444556666655544
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.56 E-value=1.3e-12 Score=129.21 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=69.5
Q ss_pred CCeEeecccchh-hhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchh-HHHHHHHHHhceeeEeecCCccCccc
Q 042987 342 RGLVVESWAPQV-EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQK-MIRAVVVEEMKVGLAVTRSEEKDRLV 419 (481)
Q Consensus 342 ~~v~v~~~~p~~-~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 419 (481)
.++.+.+|+++. +++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ .
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~---~------ 332 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS---E------ 332 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec---C------
Confidence 467788999864 59999999 999999999999999999999998876675 68888854 4998754 2
Q ss_pred CHHHHHHHHHHHhcC-ch
Q 042987 420 SAAELEQRVSELMDS-EK 436 (481)
Q Consensus 420 ~~~~l~~~i~~~l~~-~~ 436 (481)
+++++.++|.++++| ++
T Consensus 333 ~~~~la~~i~~ll~~~~~ 350 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSD 350 (382)
T ss_pred CHHHHHHHHHHHHcCCHH
Confidence 689999999999987 54
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=9.6e-16 Score=133.02 Aligned_cols=136 Identities=15% Similarity=0.272 Sum_probs=97.3
Q ss_pred EEEEecCCCcCCCHHH-HHHHHHHHHh--CCCeEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEeecccc-h
Q 042987 279 VLFLCFGSLGSFSSKQ-LKEMAIGLER--SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK--DRGLVVESWAP-Q 352 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~-~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v~~~~p-~ 352 (481)
+|+|+.||........ +..++..+.. .+..+++++|... . ........ ..++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~---------~-----~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN---------Y-----EELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE---------C-----HHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc---------H-----HHHHHHHhccCCcEEEEechhhH
Confidence 4899999876332222 2233443333 2578888887641 0 01111111 14788889999 6
Q ss_pred hhhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc----chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHH
Q 042987 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA----EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRV 428 (481)
Q Consensus 353 ~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i 428 (481)
.+++..+|+ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|+.+.... ++.+.|.++|
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~~-----~~~~~L~~~i 138 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDESE-----LNPEELAEAI 138 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECCC------SCCCHHHHH
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCccc-----CCHHHHHHHH
Confidence 779999999 999999999999999999999999988 9999999996 559999999877 8899999999
Q ss_pred HHHhcCch
Q 042987 429 SELMDSEK 436 (481)
Q Consensus 429 ~~~l~~~~ 436 (481)
.++++++.
T Consensus 139 ~~l~~~~~ 146 (167)
T PF04101_consen 139 EELLSDPE 146 (167)
T ss_dssp HCHCCCHH
T ss_pred HHHHcCcH
Confidence 99998775
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=3.3e-11 Score=118.78 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=103.9
Q ss_pred CCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhC----CCeEEEEEeCCC
Q 042987 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS----GVKFLWVVRAPA 317 (481)
Q Consensus 243 ~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~ 317 (481)
.++.+|| |+........ . . . ++ +++++|.+--||....-.+.+..++++++.. +..|++.+.+..
T Consensus 180 ~k~~~vGnPv~d~l~~~~--~--~---~-l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~ 249 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPPE--R--K---P-LL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL 249 (396)
T ss_pred CeEEEeCcCHHhcCcccc--c--c---c-cC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 4799999 7765433211 1 1 1 22 2334888889998644444455566666553 678888874321
Q ss_pred CCCccccccccccCch-hhHh---------hhcCCCeEeecccc-hhhhhcccCcceeeeccCchhHHHhHhcCCcEEec
Q 042987 318 PDSIENRSSLESLLPE-GFLD---------RTKDRGLVVESWAP-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 318 ~~~~~~~~~~~~~lp~-~~~~---------~~~~~~v~v~~~~p-~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~ 386 (481)
.. ......+.+ +... ....+++.+..+.. ...++..+++ +|+-+|..| .|++..|+|+|++
T Consensus 250 ~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ili 321 (396)
T TIGR03492 250 SL-----EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQL 321 (396)
T ss_pred CH-----HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEE
Confidence 00 000000000 0000 01112344544543 3569999999 999999766 9999999999999
Q ss_pred ccccchhHHHHHHHHH---hceeeEeecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 387 PLYAEQKMIRAVVVEE---MKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 387 P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
|....|. |+...++. .|.++.+... +.+.|.+++.++++|++
T Consensus 322 p~~~~q~-na~~~~~~~~l~g~~~~l~~~-------~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 322 PGKGPQF-TYGFAEAQSRLLGGSVFLASK-------NPEQAAQVVRQLLADPE 366 (396)
T ss_pred eCCCCHH-HHHHHHhhHhhcCCEEecCCC-------CHHHHHHHHHHHHcCHH
Confidence 9888887 98766322 2666666653 45999999999998876
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.34 E-value=2.7e-13 Score=113.85 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPA 84 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~ 84 (481)
|+|.+.|+.||++|+++||++|+++| |+|+++++. .+++.++.. |+.|..++.+.. ++.. .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG--h~V~~~~~~-------~~~~~v~~~-----Gl~~~~~~~~~~-~~~~----~ 61 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG--HEVRLATPP-------DFRERVEAA-----GLEFVPIPGDSR-LPRS----L 61 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEETG-------GGHHHHHHT-----T-EEEESSSCGG-GGHH----H
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC--CeEEEeecc-------cceeccccc-----CceEEEecCCcC-cCcc----c
Confidence 78999999999999999999999999 999999876 556666665 999999985411 1110 0
Q ss_pred CchHHHHHHHHh--hhHHHHHHHHHhhc--------cCCccEEEECCCCcchHHhhhhhcCCceEEEeccchhh
Q 042987 85 DFPALVYELGEL--NNPKLHETLITISK--------RSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTAGSV 148 (481)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~ll~~~~~--------~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~ 148 (481)
.....+....+. ....+.+.+++... ....|+++.+.....+..+| |++|||++.....+.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~va-E~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 62 EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVA-EQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHH-HHHTS-EEEEESSGGGS
T ss_pred chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeE-hhhCchHHHHhhCCcCc
Confidence 011111111111 22223333333221 13578888887777788889 99999999988877554
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.27 E-value=8.7e-09 Score=104.73 Aligned_cols=140 Identities=21% Similarity=0.231 Sum_probs=90.0
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhh---
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVE--- 354 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~--- 354 (481)
.+++..|++. ....+..++++++.. +.+++ .+|.+. ..+.+.+.....++.+.+++++.+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~~~~V~f~G~v~~~ev~~ 327 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFAGTPTVFTGMLQGDELSQ 327 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhccCCeEEeccCCHHHHHH
Confidence 5556668875 223356677777765 45554 444320 112233333445788889998544
Q ss_pred hhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHH---hceeeEeecCCccCcccCHHHHHHH
Q 042987 355 VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEE---MKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 355 ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
++..+++ +|.-.. ..++.||+++|+|+|+....+ ....+ +. -+.|..++.. +.+++.++
T Consensus 328 ~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~~~-------d~~~la~~ 393 (465)
T PLN02871 328 AYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYTPG-------DVDDCVEK 393 (465)
T ss_pred HHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeCCC-------CHHHHHHH
Confidence 8888998 885443 346889999999999876532 22334 33 3778888763 58999999
Q ss_pred HHHHhcCch-hHHHHHHHHHHH
Q 042987 428 VSELMDSEK-GRAVKERAVAMK 448 (481)
Q Consensus 428 i~~~l~~~~-~~~~~~~a~~l~ 448 (481)
|.++++|++ .+.|.+++++..
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHH
Confidence 999998876 345555555543
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.26 E-value=2.4e-08 Score=97.65 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCeEeecccchhh---hhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +.-+.|.....
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC--
Confidence 45788889988664 7899998 887754 478999999999999987654 44455 34488887776
Q ss_pred ccCcccCHHHHHHHHHHHhcCch
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+.+++.++|.++++|++
T Consensus 317 -----~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 317 -----GDAEAFAAALAALLADPE 334 (364)
T ss_pred -----CCHHHHHHHHHHHHcCHH
Confidence 457889999999999886
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.16 E-value=8.3e-08 Score=95.48 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCCeEeecccchhh---hhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+....+ ....+ +.-+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCC--
Confidence 35788889999765 5888888 7754 22358999999999999876543 44456 45467888766
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
.+.+++.++|.++++|++ .+.+.+++++.
T Consensus 353 -----~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 -----RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468999999999998875 33444444443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=1.8e-07 Score=91.18 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=61.1
Q ss_pred CCCeEeecccchhh---hhcccCcceeeec----cCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTH----CGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~H----gG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
..++.+.+|+++.+ ++..+++ +|+. .|. .++.||+++|+|+|+.+.. .+...+ +.-+.|.....
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEECC-
Confidence 35788889997554 6888998 6632 333 4789999999999997654 345556 34247877776
Q ss_pred CccCcccCHHHHHHHHHHHhcCch
Q 042987 413 EEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+.+++.+++.++++|+.
T Consensus 314 ------~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 314 ------GDAEDLAAALERLIDDPD 331 (359)
T ss_pred ------CCHHHHHHHHHHHHhChH
Confidence 358999999999999776
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=1.2e-07 Score=93.40 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=88.2
Q ss_pred cEEEEecCCCc-CCCHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHh---hhcCCCeEeecccch
Q 042987 278 SVLFLCFGSLG-SFSSKQLKEMAIGLERS-GVKFLWVVRAPAPDSIENRSSLESLLPEGFLD---RTKDRGLVVESWAPQ 352 (481)
Q Consensus 278 ~~v~vs~GS~~-~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~v~v~~~~p~ 352 (481)
..+++..|+.. ....+.+..++..+.+. +..+++ +|.+. ....+.+ .....++.+.+++++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-------------~~~~~~~~~~~~~~~~v~~~g~~~~ 285 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP-------------EKEELKELAKALGLDNVTFLGRVPK 285 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc-------------cHHHHHHHHHHcCCCcEEEeCCCCh
Confidence 36777778876 23344444444444443 455443 44320 0011111 223457888899986
Q ss_pred hh---hhcccCcceeeeccC---------chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccC
Q 042987 353 VE---VLNHESVGGFVTHCG---------WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVS 420 (481)
Q Consensus 353 ~~---ll~~~~~~~~I~HgG---------~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (481)
.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+... ...+.|...+. -+
T Consensus 286 ~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~~-------~~ 351 (394)
T cd03794 286 EELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVPP-------GD 351 (394)
T ss_pred HHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeCC-------CC
Confidence 54 7888988 664333 23479999999999999887655432 22267777766 36
Q ss_pred HHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Q 042987 421 AAELEQRVSELMDSEK-GRAVKERAVAMKE 449 (481)
Q Consensus 421 ~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~ 449 (481)
.+++.++|.++++|++ .+.+++++++...
T Consensus 352 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 352 PEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 8999999999998876 3445555544443
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.13 E-value=3.2e-07 Score=91.34 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCeEeecccchhh---hhcccCcceeee---ccCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~---HgG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++|.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+... ......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcCC--
Confidence 35788889998765 6778888 653 2232 378999999999998643 3344555 34246777766
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMK 448 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~ 448 (481)
.+++++.++|.++++|++ .+.+.+++++..
T Consensus 351 -----~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 -----FDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 469999999999999876 344555554433
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.10 E-value=3.4e-07 Score=89.69 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCCeEeecccchhh---hhcccCcceeeecc----CchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~Hg----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+.... ..+..+ +.-+.|..++...
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLV-ADGENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----Chhhhe-ecCceeEEeCCCC
Confidence 45788889998754 6888998 77443 346899999999999997643 344555 3436788777643
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEA 450 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~ 450 (481)
. ++.+++.+++++++ .+.+.+++++..+.
T Consensus 331 -------~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 331 -------E-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred -------H-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3 89999999998876 34455555554443
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=2.9e-07 Score=90.72 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCeEeecccch-hhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 342 RGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 342 ~~v~v~~~~p~-~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
+++.+.++.++ ..++..+++ +|.- |...++.||+++|+|+|+.... ..+..+ +.-..|...+.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i-~~~~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVV-KHGETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----Cchhhh-cCCCceEEcCC-----
Confidence 46777787765 458888988 6633 3345999999999999996543 345555 34246766665
Q ss_pred cccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 417 RLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
-+.+++.+++.++++|++ .+.+++++++.
T Consensus 321 --~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 --GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999998876 34455555554
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=2.2e-08 Score=89.36 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=98.4
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccc-hhhhh
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVEVL 356 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p-~~~ll 356 (481)
-|+|++|..- +......++..|.+.++.+-+++|.. ...+ ..+..+.. .+|+...-... ...++
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-----------~p~l-~~l~k~~~~~~~i~~~~~~~dma~LM 225 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-----------NPTL-KNLRKRAEKYPNINLYIDTNDMAELM 225 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC-----------Ccch-hHHHHHHhhCCCeeeEecchhHHHHH
Confidence 6999998752 33456678888888887776777642 1112 22333333 34555444443 34599
Q ss_pred cccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
..+++ .|+-||. |+.|++.-|+|.+++|+...|--.|... +.+|+-..+.-. ++......-+.++..|..
T Consensus 226 ke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~------l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 226 KEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH------LKDLAKDYEILQIQKDYA 295 (318)
T ss_pred Hhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC------CchHHHHHHHHHhhhCHH
Confidence 99999 9988875 9999999999999999999999999999 566776666532 566667777777887776
Q ss_pred hHHHHHHHHH
Q 042987 437 GRAVKERAVA 446 (481)
Q Consensus 437 ~~~~~~~a~~ 446 (481)
.|++...
T Consensus 296 ---~rk~l~~ 302 (318)
T COG3980 296 ---RRKNLSF 302 (318)
T ss_pred ---Hhhhhhh
Confidence 5554443
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.04 E-value=2e-06 Score=86.13 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCeEeecccchh---hhhcccCcceeeeccCc------hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecC
Q 042987 342 RGLVVESWAPQV---EVLNHESVGGFVTHCGW------NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 342 ~~v~v~~~~p~~---~ll~~~~~~~~I~HgG~------gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
+|+.+.+|+|+. .++..+++.++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-
Confidence 478888999865 47888998555555332 2368999999999998754321 12233 3 77888876
Q ss_pred CccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 042987 413 EEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
-+.+++.++|.++++|+. .+.|++++++..+. .-+....++.+++.+.+.
T Consensus 358 ------~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 358 ------ESVEALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRGL 408 (412)
T ss_pred ------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHH
Confidence 368999999999998875 34556666554432 233335556666655543
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.03 E-value=1.2e-06 Score=87.81 Aligned_cols=91 Identities=20% Similarity=0.341 Sum_probs=62.0
Q ss_pred CCeEee-cccchhh---hhcccCcceeee-c---cC---chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEee
Q 042987 342 RGLVVE-SWAPQVE---VLNHESVGGFVT-H---CG---WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~v~v~-~~~p~~~---ll~~~~~~~~I~-H---gG---~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
+++++. +|+|..+ +|..+++ +|. + -| -+++.||+++|+|+|+.... .....+ +.-+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHh-cCCCCEEEEC
Confidence 355544 6887554 6888998 663 1 12 34799999999999996543 344556 4536787762
Q ss_pred cCCccCcccCHHHHHHHHHHHhcC---ch-hHHHHHHHHHHH
Q 042987 411 RSEEKDRLVSAAELEQRVSELMDS---EK-GRAVKERAVAMK 448 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l~~---~~-~~~~~~~a~~l~ 448 (481)
+.+++.++|.++++| ++ .+.|.+++++..
T Consensus 367 ---------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 479999999999998 54 455666665554
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.01 E-value=4.2e-07 Score=91.44 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=67.5
Q ss_pred hhhhcccCcceeeec-----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 353 VEVLNHESVGGFVTH-----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 353 ~~ll~~~~~~~~I~H-----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
..++..+++ ++.. +|..+++||+++|+|+|+.|...++......+. ..|.++. . -+.+++.++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~-~~g~~~~--~-------~d~~~La~~ 381 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLL-QAGAAIQ--V-------EDAEDLAKA 381 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHH-HCCCeEE--E-------CCHHHHHHH
Confidence 357788887 4432 344469999999999999999888888777763 3355544 3 258999999
Q ss_pred HHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042987 428 VSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 428 i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 470 (481)
|.++++|++ .+.|.++++++.+. ..|...+.++.+.+
T Consensus 382 l~~ll~~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~ 419 (425)
T PRK05749 382 VTYLLTDPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEP 419 (425)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHH
Confidence 999999886 34555555554432 23444445544443
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.00 E-value=2.2e-06 Score=83.46 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=62.4
Q ss_pred CCCeEeecccchh---hhhcccCcceeee----ccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~----HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+ +.-+.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC--
Confidence 4678888999744 47888888 663 2556789999999999999766 3345555 33367777766
Q ss_pred ccCcccCHHHHHHHHHHHhcCch
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
.+.+++.++|.++++|++
T Consensus 326 -----~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 326 -----GDPEALAEAILRLLDDPE 343 (374)
T ss_pred -----CCHHHHHHHHHHHHcChH
Confidence 458999999999998876
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.00 E-value=1.8e-06 Score=83.85 Aligned_cols=331 Identities=15% Similarity=0.086 Sum_probs=167.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSP 83 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (481)
+|++++....|+......|+++|.+.| |+|++++....... .. ...++.+..++.... .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~----~---- 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAG--YEVHVVAPPGDELE------EL-----EALGVKVIPIPLDRR----G---- 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcC--CeeEEEecCCCccc------cc-----ccCCceEEecccccc----c----
Confidence 378888778899999999999999999 99999976543210 01 123566666653210 0
Q ss_pred CCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcc--hHHhhhhhcCCceEEEeccchhhHhhHhhhcccccc
Q 042987 84 ADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNP--AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (481)
......+. ....+...+++. +||+|++...... +..++ ...+.|.+..........
T Consensus 60 ~~~~~~~~-----~~~~~~~~~~~~----~~dvv~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~------------ 117 (359)
T cd03808 60 INPFKDLK-----ALLRLYRLLRKE----RPDIVHTHTPKPGILGRLAA-RLAGVPKVIYTVHGLGFV------------ 117 (359)
T ss_pred cChHhHHH-----HHHHHHHHHHhc----CCCEEEEccccchhHHHHHH-HHcCCCCEEEEecCcchh------------
Confidence 01111111 112344555555 9999998754432 23334 545666555433211000
Q ss_pred cCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCCC
Q 042987 162 TTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGET 241 (481)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 241 (481)
. . .... ......... .......+.+++.+....+. +.+....+ .
T Consensus 118 ----------------~----~----~~~~---~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~--~ 161 (359)
T cd03808 118 ----------------F----T----SGGL---KRRLYLLLE--RLALRFTDKVIFQNEDDRDL-----ALKLGIIK--K 161 (359)
T ss_pred ----------------h----c----cchh---HHHHHHHHH--HHHHhhccEEEEcCHHHHHH-----HHHhcCCC--c
Confidence 0 0 0000 000111111 11233456777766443332 22211100 0
Q ss_pred CCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCc-CCCHHHHHHHHHHHHh--CCCeEEEEEeCCCC
Q 042987 242 SPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLG-SFSSKQLKEMAIGLER--SGVKFLWVVRAPAP 318 (481)
Q Consensus 242 ~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~ 318 (481)
...+..++......... ..... ..++..+++..|++. ....+.+...+..+.+ .+..+++ +|....
T Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~~ 230 (359)
T cd03808 162 KKTVLIPGSGVDLDRFS---PSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGDE 230 (359)
T ss_pred CceEEecCCCCChhhcC---ccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCCc
Confidence 02333333222111100 00000 122346777788876 3334444444444443 3445444 343210
Q ss_pred CCccccccccccCchh-hHhhhcCCCeEeecccch-hhhhcccCcceeeeccC----chhHHHhHhcCCcEEecccccch
Q 042987 319 DSIENRSSLESLLPEG-FLDRTKDRGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 319 ~~~~~~~~~~~~lp~~-~~~~~~~~~v~v~~~~p~-~~ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ 392 (481)
. ...... ........++.+.++..+ ..++..+++ +|..+. .+++.||+++|+|+|+.+..+
T Consensus 231 ~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~-- 297 (359)
T cd03808 231 E---------NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG-- 297 (359)
T ss_pred c---------hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC--
Confidence 0 000000 111112356777776543 458899998 776543 578999999999999976543
Q ss_pred hHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 393 KMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
+...+ +.-+.|...+. -+.+++.+++.+++.|++ .+.+.+++++.
T Consensus 298 --~~~~i-~~~~~g~~~~~-------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 298 --CREAV-IDGVNGFLVPP-------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred --chhhh-hcCcceEEECC-------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33445 33367777765 368999999999998876 23344444443
No 59
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.00 E-value=4.8e-08 Score=96.13 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCeEeecccch---hhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcc
Q 042987 342 RGLVVESWAPQ---VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRL 418 (481)
Q Consensus 342 ~~v~v~~~~p~---~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
+++.+.+.+++ ..++..+++ +|+-.|.. +.||+++|+|+|.++..++++. .+ +. |.+..+.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~~-g~~~lv~-------- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-EA-GTNKLVG-------- 318 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-hc-CceEEeC--------
Confidence 47777776654 356778887 99987654 7999999999999976665552 23 33 7776552
Q ss_pred cCHHHHHHHHHHHhcCchhHHHHHHH
Q 042987 419 VSAAELEQRVSELMDSEKGRAVKERA 444 (481)
Q Consensus 419 ~~~~~l~~~i~~~l~~~~~~~~~~~a 444 (481)
.+.++|.+++.++++|++ .+++.
T Consensus 319 ~d~~~i~~ai~~ll~~~~---~~~~~ 341 (365)
T TIGR00236 319 TDKENITKAAKRLLTDPD---EYKKM 341 (365)
T ss_pred CCHHHHHHHHHHHHhChH---HHHHh
Confidence 368999999999998876 55443
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=1.1e-06 Score=85.95 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=90.6
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCC-CeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchh---h
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSG-VKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---E 354 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~---~ 354 (481)
.+++..|++. ....+..+++++++.. ..+++. |.+ .....+..-..+.-..+||.+.+|+|+. .
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~-G~g---------~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIV-GEG---------PLEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEE-eCC---------hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 5666778865 2334566777777765 454443 322 0011111101011224689999999974 4
Q ss_pred hhcccCcceeee---ccCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 355 VLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 355 ll~~~~~~~~I~---HgG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
++..+++.++-+ +.|. .++.||+++|+|+|+....+.+..... +. +.|...+. -+.+++.++|.+
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-------~d~~~~~~~i~~ 328 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-------GDPAALAEAIRR 328 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-------CCHHHHHHHHHH
Confidence 788888833323 2343 478999999999999766655543322 13 67777765 469999999999
Q ss_pred HhcCch-hHHHHHHHHHHHH
Q 042987 431 LMDSEK-GRAVKERAVAMKE 449 (481)
Q Consensus 431 ~l~~~~-~~~~~~~a~~l~~ 449 (481)
+++|++ .+.+++++++..+
T Consensus 329 l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 329 LLEDPELRERLGEAARERAE 348 (357)
T ss_pred HHHCHHHHHHHHHHHHHHHH
Confidence 999886 3455555555443
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.93 E-value=1.2e-07 Score=93.27 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=83.2
Q ss_pred CcEEEEecCCCcCC-CHHHHHHHHHHHHhCCC-eEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEeecccch
Q 042987 277 RSVLFLCFGSLGSF-SSKQLKEMAIGLERSGV-KFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK--DRGLVVESWAPQ 352 (481)
Q Consensus 277 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v~~~~p~ 352 (481)
++.|++++|..... ..+.+..++++++.... .+.+++..+... ...+-+ ...+.. .+++.+.+...+
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--------~~~l~~-~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--------RPRIRE-AGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--------HHHHHH-HHHhhccCCCCEEEECCcCH
Confidence 44788888877643 35557778888876532 244444332100 011111 111111 357777665544
Q ss_pred h---hhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHH
Q 042987 353 V---EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 353 ~---~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~ 429 (481)
. .++..+++ +|+.+| |.+.||+++|+|+|+++.. |. +..+.+. |++..+.. +.++|.+++.
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--------~~~~i~~~i~ 332 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--------DPEAILAAIE 332 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--------CHHHHHHHHH
Confidence 3 46777888 999999 7888999999999998753 22 2223233 66655432 5789999999
Q ss_pred HHhcCch
Q 042987 430 ELMDSEK 436 (481)
Q Consensus 430 ~~l~~~~ 436 (481)
++++++.
T Consensus 333 ~ll~~~~ 339 (363)
T cd03786 333 KLLSDEF 339 (363)
T ss_pred HHhcCch
Confidence 9998875
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.90 E-value=9e-06 Score=79.34 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred CCCeEeecccchh---hhhcccCcceeee----ccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~----HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+..+ ....+ +..+.|.....
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~-~~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEII-TDGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHh-cCCcceeEECC--
Confidence 4588888999865 46788888 662 255678999999999999876543 33445 34356677666
Q ss_pred ccCcccCHHHHHHHHHHHhcCch
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+.+++.+++.++++++.
T Consensus 329 -----~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 -----GDPEALAEAILRLLADPW 346 (377)
T ss_pred -----CCHHHHHHHHHHHhcCcH
Confidence 469999999999998875
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.89 E-value=3.8e-06 Score=81.14 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCeEeecccc-hhhhhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHHhc-eeeEeecCCcc
Q 042987 342 RGLVVESWAP-QVEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMK-VGLAVTRSEEK 415 (481)
Q Consensus 342 ~~v~v~~~~p-~~~ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~ 415 (481)
.++.+.++.. ...++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+.. +.+. | .|...+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~---- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPN---- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCC----
Confidence 4566666633 3468888888 776542 5689999999999998766554432 2234 4 7777766
Q ss_pred CcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 416 DRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
.+.+++.++|.++++|++ .+.++++++++
T Consensus 304 ---~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 304 ---GDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 468999999999999887 33444444433
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.84 E-value=7e-06 Score=78.26 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=70.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHHHH
Q 042987 13 RGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALVYE 92 (481)
Q Consensus 13 ~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (481)
.-|+.=|-.+.++|.++| |+|.+.+-... ...++++.+ ++.+..+.... ......+..
T Consensus 10 p~hvhfFk~~I~eL~~~G--heV~it~R~~~-----~~~~LL~~y-----g~~y~~iG~~g----------~~~~~Kl~~ 67 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRG--HEVLITARDKD-----ETEELLDLY-----GIDYIVIGKHG----------DSLYGKLLE 67 (335)
T ss_pred chHHHHHHHHHHHHHhCC--CEEEEEEeccc-----hHHHHHHHc-----CCCeEEEcCCC----------CCHHHHHHH
Confidence 349999999999999999 99999864422 445566665 88888876431 123333333
Q ss_pred HHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccc
Q 042987 93 LGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTA 145 (481)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~ 145 (481)
... ....+-+++++. +||++|+-. +..+..+| ..+|+|+|.+.-..
T Consensus 68 ~~~-R~~~l~~~~~~~----~pDv~is~~-s~~a~~va-~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 68 SIE-RQYKLLKLIKKF----KPDVAISFG-SPEAARVA-FGLGIPSIVFNDTE 113 (335)
T ss_pred HHH-HHHHHHHHHHhh----CCCEEEecC-cHHHHHHH-HHhCCCeEEEecCc
Confidence 332 233444555555 999999753 45566688 99999999986643
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.84 E-value=2.6e-05 Score=77.89 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=65.7
Q ss_pred CCeEeecccchh---hhhcccCcceeee---ccC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCc
Q 042987 342 RGLVVESWAPQV---EVLNHESVGGFVT---HCG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~v~v~~~~p~~---~ll~~~~~~~~I~---HgG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+++.+.+++++. .++..+++ +|. +.| ..++.||+++|+|+|+....+ ....+ +.-+.|...+.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i-~~~~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAV-ADGETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhh-ccCCceEECCC---
Confidence 578888999864 47899998 664 223 358999999999999976543 33445 34356777766
Q ss_pred cCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 415 KDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
-+.+++.++|.+++++++ .+.+++++++.
T Consensus 353 ----~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 353 ----HDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999998875 34455555543
No 66
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.83 E-value=1.5e-05 Score=80.55 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCCeEeecccchhh---hhccc----Ccceeeecc---C-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEe
Q 042987 341 DRGLVVESWAPQVE---VLNHE----SVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAV 409 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~----~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l 409 (481)
.++|.+.+++++.+ ++..+ ++ ||... | -.+++||+++|+|+|+.-..+ +...+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEe
Confidence 34677777777655 46655 55 87654 3 458999999999999986533 34444 342467777
Q ss_pred ecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 410 TRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
+. -+.+++.++|.++++|++
T Consensus 389 ~~-------~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 389 DV-------LDLEAIASALEDALSDSS 408 (439)
T ss_pred CC-------CCHHHHHHHHHHHHhCHH
Confidence 76 358999999999998876
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.78 E-value=2.3e-05 Score=77.82 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCCeEeecccchh---hhhcccCcceeeecc---C-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++|.+.+++|.. .++..+++ ++... | ..++.||+++|+|+|+.-..+ ....+ ..-+.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEeCC--
Confidence 3688888999876 46888888 66432 2 357899999999999975433 33345 23245666533
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
+.+++.++|.+++++++ .+.+.+++++.
T Consensus 350 ------~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 350 ------TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ------CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 57899999999998875 34455555543
No 68
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.78 E-value=3e-05 Score=75.93 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCeEeecccc-hh---hhhcccCcceeeecc----CchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 342 RGLVVESWAP-QV---EVLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 342 ~~v~v~~~~p-~~---~ll~~~~~~~~I~Hg----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++...+|++ +. .++..+++ +|... ..+++.||+++|+|+|+....+ ....+ +.-+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~-~~~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIV-DHGVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----Chhhe-eCCCceEEeCC--
Confidence 4677778988 43 46888888 87753 3579999999999999875432 22334 23246776665
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
.+.+++.+++.++++|++ .+.+.+++++.
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 344 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDEREELGEAAREL 344 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468999999999998876 33444444443
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.77 E-value=1.7e-05 Score=79.07 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCCeEeecccchh---hhhcccCcceeeec---cCch-hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~H---gG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+|+|+. .++..+++ +|.- -|.| ++.||+++|+|+|+....+ ....+ +. |.+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~-~-- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA-E-- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-C--
Confidence 3568888999864 47888888 6643 2443 9999999999999977653 22344 33 433222 2
Q ss_pred ccCcccCHHHHHHHHHHHhcCc
Q 042987 414 EKDRLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~ 435 (481)
.+.+++.+++.+++++.
T Consensus 318 -----~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 -----PDVESIVRKLEEAISIL 334 (398)
T ss_pred -----CCHHHHHHHHHHHHhCh
Confidence 36799999999999764
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.76 E-value=2.3e-05 Score=76.54 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=64.7
Q ss_pred CCCeEeecccchh---hhhcccCcceeeec----------cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceee
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVTH----------CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~H----------gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
.+++.+.+++|+. .++..+++ +|.- |.-+++.||+++|+|+|+.+..+ ....+ +.-..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 4578888999754 47788888 6652 33468999999999999976532 22344 4524777
Q ss_pred EeecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHH
Q 042987 408 AVTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVA 446 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~ 446 (481)
.... -+.+++.++|.++++|+. .+.+++++++
T Consensus 308 ~~~~-------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 308 LVPP-------GDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred EeCC-------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7765 368999999999998876 3344444443
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.76 E-value=2.2e-05 Score=76.75 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=85.4
Q ss_pred cEEEEecCCCcC-CCHHHHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhH---hhhc-CCCeEeeccc
Q 042987 278 SVLFLCFGSLGS-FSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSIENRSSLESLLPEGFL---DRTK-DRGLVVESWA 350 (481)
Q Consensus 278 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~-~~~v~v~~~~ 350 (481)
..+++..|.+.. ...+.+..++..+.+. +..++ .+|.... ...+...+. .+.. .+++.+.+|.
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~-ivG~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~g~~ 254 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLL-IVGDAQG---------RRFYYAELLELIKRLGLQDRVTFVGHC 254 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEE-EEECCcc---------cchHHHHHHHHHHHcCCcceEEEcCCc
Confidence 366777788763 3445555555556553 34443 3443210 000111111 1111 3568788885
Q ss_pred ch-hhhhcccCcceeeec----cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHH
Q 042987 351 PQ-VEVLNHESVGGFVTH----CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAEL 424 (481)
Q Consensus 351 p~-~~ll~~~~~~~~I~H----gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (481)
+. ..++..+++ +|+- -| .+++.||+++|+|+|+.-..+ ....+ ..-+.|..++. -+.+++
T Consensus 255 ~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~~~~~-------~~~~~l 320 (355)
T cd03819 255 SDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGLLVPP-------GDAEAL 320 (355)
T ss_pred ccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceEEeCC-------CCHHHH
Confidence 43 458888998 5532 23 359999999999999875432 34455 34247877766 468999
Q ss_pred HHHHHHHhc-Cch-hHHHHHHHHHHHH
Q 042987 425 EQRVSELMD-SEK-GRAVKERAVAMKE 449 (481)
Q Consensus 425 ~~~i~~~l~-~~~-~~~~~~~a~~l~~ 449 (481)
.++|..++. +++ .++++++|++..+
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 321 AQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999976664 444 3455555555544
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.71 E-value=3.7e-05 Score=75.10 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCCeEeecccchhh---hhcccCcceeeecc----CchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~Hg----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+.. .....+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC--
Confidence 45788889999544 6788888 65433 246789999999999997643 344445 34 67766543
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
+.+++.++|.++++|++ .+.+.+++++.
T Consensus 331 ------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45999999999998875 33445544444
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.69 E-value=2.3e-05 Score=76.62 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCeEeec-ccchh---hhhcccCcceeeec------cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEee
Q 042987 341 DRGLVVES-WAPQV---EVLNHESVGGFVTH------CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVT 410 (481)
Q Consensus 341 ~~~v~v~~-~~p~~---~ll~~~~~~~~I~H------gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
.+++.+.+ |+|+. .++..+++ +|.- |-.+++.||+++|+|+|+.+..+ ...+.+. +.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 35676664 48754 57888888 6632 33558899999999999987654 2223223 6777776
Q ss_pred cCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Q 042987 411 RSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKE 449 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~ 449 (481)
. -+.+++.+++.++++|++ .+++++++++..+
T Consensus 318 ~-------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (366)
T cd03822 318 P-------GDPAALAEAIRRLLADPELAQALRARAREYAR 350 (366)
T ss_pred C-------CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh
Confidence 6 358999999999998865 3444444444433
No 74
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.69 E-value=9.4e-06 Score=82.00 Aligned_cols=184 Identities=12% Similarity=0.127 Sum_probs=101.6
Q ss_pred CCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHH--hC--CCeEEEEEeCCC
Q 042987 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLE--RS--GVKFLWVVRAPA 317 (481)
Q Consensus 243 ~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~ 317 (481)
-++.||| |+....+.. ...++..+-+.-.+++++|-+--||-.+.=...+..++++.+ .. +.+|++....+
T Consensus 381 v~v~yVGHPL~d~i~~~---~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~- 456 (608)
T PRK01021 381 LRTVYLGHPLVETISSF---SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP- 456 (608)
T ss_pred CCeEEECCcHHhhcccC---CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch-
Confidence 6899999 998764321 223333333433345569999999976433334445666666 32 44555432221
Q ss_pred CCCccccccccccCchhhHhhhcCCC---eEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecc-cccchh
Q 042987 318 PDSIENRSSLESLLPEGFLDRTKDRG---LVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP-LYAEQK 393 (481)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~~---v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P-~~~DQ~ 393 (481)
. ..+.+.+.....+ +.+..--...+++..|++ .+.-+|. .|+|+..+|+|||++= ...=-+
T Consensus 457 ----------~--~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty 521 (608)
T PRK01021 457 ----------K--YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDT 521 (608)
T ss_pred ----------h--hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHH
Confidence 0 0011122121111 122110012578999998 8888875 5689999999999862 222334
Q ss_pred HHHHHHHH-----------HhceeeEee----cCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH
Q 042987 394 MIRAVVVE-----------EMKVGLAVT----RSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAA 451 (481)
Q Consensus 394 ~na~~v~~-----------~~G~G~~l~----~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~ 451 (481)
..++++.+ -+|-.+... .++ .++++|.+++ ++|.|++ .+++++..+++++.+
T Consensus 522 ~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~-----~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 522 FLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKD-----FQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHhccCCeeehhHHhcCCCcchhhcCCccc-----CCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 45666643 012121111 123 7899999997 8888776 345555555555554
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.69 E-value=2.2e-05 Score=75.90 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=55.9
Q ss_pred CCCeEeecccch-hhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 341 ~~~v~v~~~~p~-~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.+++.+.++.+. ..++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +.-+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---
Confidence 346777788765 358889998 6643 3356899999999999986544 445556 454678877763
Q ss_pred CcccCHHHH---HHHHHHHhcCch
Q 042987 416 DRLVSAAEL---EQRVSELMDSEK 436 (481)
Q Consensus 416 ~~~~~~~~l---~~~i~~~l~~~~ 436 (481)
+.+.+ .+++..++++++
T Consensus 315 ----~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 315 ----DEAALAAAALALLDLLLDPE 334 (353)
T ss_pred ----CHHHHHHHHHHHHhccCChH
Confidence 46666 555666666554
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.67 E-value=2.4e-05 Score=76.94 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCCeEeecccchhh---hhcccCcceeeec----------cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceee
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTH----------CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~H----------gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
..++.+.+++|+.+ ++..+++ +|.. |-.+++.||+++|+|+|+.+..+ +...+. .-+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~-~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVE-DGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhee-cCCeeE
Confidence 35788889998654 6888898 6642 23568999999999999877643 455553 437788
Q ss_pred EeecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 408 AVTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
.++. -+.+++.++|.++++|++ .+.+.+++++.
T Consensus 317 ~~~~-------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE-------GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC-------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 7776 368999999999998876 34455555443
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.66 E-value=3.4e-05 Score=75.44 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=55.0
Q ss_pred CCeEeecccch-hhhhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 342 ~~v~v~~~~p~-~~ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
+++.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+. . .|..+..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~-~--~g~~~~~----- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVG-D--SGLIVPI----- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEec-C--CceEeCC-----
Confidence 46777777654 468899998 665432 56899999999999974 4444555553 3 4555554
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 042987 417 RLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~~ 435 (481)
-+.+++.+++.++++++
T Consensus 311 --~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 --SDPEALANKIDEILKMS 327 (360)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 36889999999999543
No 78
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.65 E-value=0.00022 Score=77.02 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred CCCeEeecccchhh---hhcccC--cceeeec---cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeec
Q 042987 341 DRGLVVESWAPQVE---VLNHES--VGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTR 411 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~--~~~~I~H---gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (481)
.+.|.+.+++++.+ ++..++ .++||.- =| ..+++||+++|+|+|+....+ ....+ +.-.-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC
Confidence 35677778887754 555552 1237764 23 348899999999999986543 22333 34246887777
Q ss_pred CCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Q 042987 412 SEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMK 448 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~ 448 (481)
-+.+.|.++|.++++|++ .+.|.+++++..
T Consensus 622 -------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 622 -------HDQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred -------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 468999999999999887 345555555443
No 79
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=1.2e-05 Score=78.70 Aligned_cols=130 Identities=11% Similarity=0.184 Sum_probs=79.4
Q ss_pred cEEEEecCCCc---CCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccc--
Q 042987 278 SVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAP-- 351 (481)
Q Consensus 278 ~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p-- 351 (481)
+.|+|++=... ....+.+..+++++.+.+..++++....... ...+-+.+.+... .+|+.+.+-++
T Consensus 202 ~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--------~~~i~~~i~~~~~~~~~v~l~~~l~~~ 273 (365)
T TIGR03568 202 PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--------SRIINEAIEEYVNEHPNFRLFKSLGQE 273 (365)
T ss_pred CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--------chHHHHHHHHHhcCCCCEEEECCCChH
Confidence 48778775433 3345678899999988775666665432100 0001111111111 35777776555
Q ss_pred -hhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 352 -QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 352 -~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
...++.++++ +|+-++.|. .||.+.|+|.|.+- +-+ .-+ +. |..+.+-. .+.++|.+++.+
T Consensus 274 ~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~vg-------~~~~~I~~a~~~ 335 (365)
T TIGR03568 274 RYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDVD-------PDKEEIVKAIEK 335 (365)
T ss_pred HHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEeC-------CCHHHHHHHHHH
Confidence 4568899999 999886666 99999999999874 211 111 22 44333222 478999999998
Q ss_pred Hhc
Q 042987 431 LMD 433 (481)
Q Consensus 431 ~l~ 433 (481)
+++
T Consensus 336 ~~~ 338 (365)
T TIGR03568 336 LLD 338 (365)
T ss_pred HhC
Confidence 653
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.62 E-value=2.7e-06 Score=81.75 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=102.7
Q ss_pred CCeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCe-EEEEEeCCCCCC
Q 042987 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK-FLWVVRAPAPDS 320 (481)
Q Consensus 243 ~~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~ 320 (481)
.++.+|| |+...... .+.+ ++ ++++|.+--||..+.-...+..++++++..... .++.+....
T Consensus 144 ~~~~~VGhPl~d~~~~-----~~~~----~~---~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--- 208 (347)
T PRK14089 144 SKATYVGHPLLDEIKE-----FKKD----LD---KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--- 208 (347)
T ss_pred CCCEEECCcHHHhhhh-----hhhh----cC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC---
Confidence 5688999 87653221 1111 22 224899999998744444455455555443221 223332210
Q ss_pred ccccccccccCchhhHhhhcC-CCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc--ccchhHHHH
Q 042987 321 IENRSSLESLLPEGFLDRTKD-RGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL--YAEQKMIRA 397 (481)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~-~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~--~~DQ~~na~ 397 (481)
+ . +.+.+.... ..+.+.+ .-.+++..+++ +|+-+|..|+ |+..+|+|+|+ ++ ..-|+.||+
T Consensus 209 -----~----~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak 272 (347)
T PRK14089 209 -----K----G-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAK 272 (347)
T ss_pred -----c----H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHH
Confidence 0 0 112221211 1222322 23468999999 9999999999 99999999999 55 347999999
Q ss_pred HHHH--HhceeeEe-------------ecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChH
Q 042987 398 VVVE--EMKVGLAV-------------TRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSR 462 (481)
Q Consensus 398 ~v~~--~~G~G~~l-------------~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (481)
++.+ ..|+.-.+ ..++ .|++.|.+.+.+. . .+.+++...++++.+. + |.+.
T Consensus 273 ~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~-----~t~~~la~~i~~~-~---~~~~~~~~~~l~~~l~----~-~a~~ 338 (347)
T PRK14089 273 MFVKLKHIGLANIFFDFLGKEPLHPELLQEF-----VTVENLLKAYKEM-D---REKFFKKSKELREYLK----H-GSAK 338 (347)
T ss_pred HHHcCCeeehHHHhcCCCcccccCchhhccc-----CCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhc----C-CHHH
Confidence 9941 44555444 2234 7889999988772 1 1125555555555442 3 5553
Q ss_pred HHHHHH
Q 042987 463 VALDNL 468 (481)
Q Consensus 463 ~~~~~~ 468 (481)
+..+.+
T Consensus 339 ~~A~~i 344 (347)
T PRK14089 339 NVAKIL 344 (347)
T ss_pred HHHHHH
Confidence 444443
No 81
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.62 E-value=0.00039 Score=73.32 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCeEeeccc-ch---hhhhcc-cC-cceeeec---cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeec
Q 042987 342 RGLVVESWA-PQ---VEVLNH-ES-VGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTR 411 (481)
Q Consensus 342 ~~v~v~~~~-p~---~~ll~~-~~-~~~~I~H---gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (481)
+.|.+.++. +. .+++.+ ++ .++||.- =| ..+++||+++|+|+|+.-..+ ....| +.-.-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV-~dg~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEII-QDGVSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeCC
Confidence 456665653 32 245543 22 1237743 23 348899999999999975543 44555 34256888887
Q ss_pred CCccCcccCHHHHHHHHHHHh----cCch-hHHHHHHHH
Q 042987 412 SEEKDRLVSAAELEQRVSELM----DSEK-GRAVKERAV 445 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~~l----~~~~-~~~~~~~a~ 445 (481)
-+++++.++|.+++ +|++ .+.+.++++
T Consensus 694 -------~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 694 -------YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred -------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35888999988876 4665 344444443
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.61 E-value=0.00016 Score=70.27 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCeEeecccch-hhhhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 342 ~~v~v~~~~p~-~~ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
+++.+.+.... ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+. . .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~-~--~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVG-D--TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhh-c--CCEEeCC-----
Confidence 35555554443 468899998 886554 3799999999999998543 33455553 3 5666655
Q ss_pred cccCHHHHHHHHHHHhcCch
Q 042987 417 RLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+.+++.+++.+++++++
T Consensus 317 --~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 --GDPEALAEAIEALLADPA 334 (365)
T ss_pred --CCHHHHHHHHHHHHhChH
Confidence 368999999999998865
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.58 E-value=2.5e-05 Score=76.67 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=86.1
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecccch--h
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT-KDRGLVVESWAPQ--V 353 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~v~~~~p~--~ 353 (481)
.+++..|.+.......+..+++++... +..++ .+|.+. ....+ ....+.. ..++|.+.+|+++ .
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~---------~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~ 249 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGS---------DFEKC-KAYSRELGIEQRIIWHGWQSQPWE 249 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCc---------cHHHH-HHHHHHcCCCCeEEEecccCCcHH
Confidence 555666776532334466677777664 33443 444320 01111 1111111 2457888888753 2
Q ss_pred h---hhcccCcceeeec----cCchhHHHhHhcCCcEEecc-cccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHH
Q 042987 354 E---VLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWP-LYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELE 425 (481)
Q Consensus 354 ~---ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~ 425 (481)
. .+..+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.+++.
T Consensus 250 ~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~-------~d~~~la 315 (359)
T PRK09922 250 VVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP-------GNIDEFV 315 (359)
T ss_pred HHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC-------CCHHHHH
Confidence 2 3445676 6653 33579999999999999875 332 22344 44356777766 4699999
Q ss_pred HHHHHHhcCch---hHHHHHHHHHHHHH
Q 042987 426 QRVSELMDSEK---GRAVKERAVAMKEA 450 (481)
Q Consensus 426 ~~i~~~l~~~~---~~~~~~~a~~l~~~ 450 (481)
++|.++++|++ .+.++++++++.++
T Consensus 316 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 316 GKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999886 24455555555543
No 84
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.57 E-value=9.1e-05 Score=72.42 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=58.5
Q ss_pred CCCeEeecccch-hhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 341 ~~~v~v~~~~p~-~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.+++.+.++..+ ..++..+++ +|+- |-..+++||+++|+|+|+....+ ....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 356777777444 458888888 6654 44678999999999999876544 23344 44 55655544
Q ss_pred CcccCHHHHHHHHHHHhcCch
Q 042987 416 DRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+++++.++|.++++|++
T Consensus 316 ---~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 316 ---ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred ---CCHHHHHHHHHHHHhCcc
Confidence 358999999999999987
No 85
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.56 E-value=1.2e-06 Score=84.78 Aligned_cols=259 Identities=13% Similarity=0.098 Sum_probs=126.4
Q ss_pred HHHHHHhhhHHHHHHHHHhhccCCccEEE--ECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhcccccccCcccc
Q 042987 90 VYELGELNNPKLHETLITISKRSNLKAFV--IDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFR 167 (481)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~pD~VI--~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 167 (481)
....+......+.+.+... +||+|| .|-+...++.+||..++||++-+...
T Consensus 48 ~~~~~~~~~~~~~~~~~~~----~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG----------------------- 100 (346)
T PF02350_consen 48 MAKSTGLAIIELADVLERE----KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG----------------------- 100 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHH----T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-------------------------
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-----------------------
Confidence 3445555677888888888 999988 55555555444449999997776321
Q ss_pred ccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCCCCCCCCeEE
Q 042987 168 ELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTPGETSPPLYC 247 (481)
Q Consensus 168 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~v~~ 247 (481)
+ +..+...... ....+. ....-++..++++....+ .+... |.+..+++.
T Consensus 101 -----------l---Rs~d~~~g~~---de~~R~-----~i~~la~lhf~~t~~~~~-----~L~~~----G~~~~rI~~ 149 (346)
T PF02350_consen 101 -----------L---RSGDRTEGMP---DEINRH-----AIDKLAHLHFAPTEEARE-----RLLQE----GEPPERIFV 149 (346)
T ss_dssp -----------------S-TTSSTT---HHHHHH-----HHHHH-SEEEESSHHHHH-----HHHHT----T--GGGEEE
T ss_pred -----------C---CccccCCCCc---hhhhhh-----hhhhhhhhhccCCHHHHH-----HHHhc----CCCCCeEEE
Confidence 0 0000100000 011111 111223345555533222 12222 222257999
Q ss_pred eCcccCCCCCCCCCCCcchh--hhhhcCCCCCcEEEEecCCCcCCC-H---HHHHHHHHHHHhC-CCeEEEEEeCCCCCC
Q 042987 248 IGPVVGRGNGENRGRDRHEC--LSWLDSKPSRSVLFLCFGSLGSFS-S---KQLKEMAIGLERS-GVKFLWVVRAPAPDS 320 (481)
Q Consensus 248 vGpl~~~~~~~~~~~~~~~l--~~~l~~~~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~ 320 (481)
||....+.-...+....+.. ..++.. .+++.++|++=...... + ..+..++++|.+. +.++||.+....
T Consensus 150 vG~~~~D~l~~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--- 225 (346)
T PF02350_consen 150 VGNPGIDALLQNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--- 225 (346)
T ss_dssp ---HHHHHHHHHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H---
T ss_pred EChHHHHHHHHhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc---
Confidence 99553321100000111111 122222 45569999986555444 3 4455566666665 788999886430
Q ss_pred ccccccccccCchhhHhhhcC-CCeEeecccc---hhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHH
Q 042987 321 IENRSSLESLLPEGFLDRTKD-RGLVVESWAP---QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIR 396 (481)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~-~~v~v~~~~p---~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na 396 (481)
... ..+.+.... +|+.+...++ ...+|.++++ +|+..| |-.-||.++|+|.|.+ -|+-..-
T Consensus 226 -----~~~----~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRq 290 (346)
T PF02350_consen 226 -----RGS----DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQ 290 (346)
T ss_dssp -----HHH----HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-H
T ss_pred -----hHH----HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCH
Confidence 001 111222221 3787777665 4568899999 999999 4444999999999999 2222222
Q ss_pred HHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc
Q 042987 397 AVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 397 ~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~ 435 (481)
.-+ +. |..+.+ . .+.++|.+++.+++++.
T Consensus 291 e~r-~~-~~nvlv-~-------~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 291 EGR-ER-GSNVLV-G-------TDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHH-HT-TSEEEE-T-------SSHHHHHHHHHHHHH-H
T ss_pred HHH-hh-cceEEe-C-------CCHHHHHHHHHHHHhCh
Confidence 222 23 666552 2 47999999999999763
No 86
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=0.0002 Score=68.68 Aligned_cols=330 Identities=15% Similarity=0.108 Sum_probs=174.8
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHH
Q 042987 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALV 90 (481)
Q Consensus 11 p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 90 (481)
-+-|-++-.++|.++|+++-|++.+++.|.+.... ...... -...+..+-+|.+ ..
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~------e~a~~~--~~~~v~h~YlP~D-------------~~--- 112 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGA------ERAAAL--FGDSVIHQYLPLD-------------LP--- 112 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHH------HHHHHH--cCCCeEEEecCcC-------------ch---
Confidence 57789999999999999997778888876432211 111111 1112444444432 11
Q ss_pred HHHHHhhhHHHHHHHHHhhccCCccEEE-ECCCCcchHH-hhhhhcCCceEEEeccchhhHhhHhhhcccccccCccccc
Q 042987 91 YELGELNNPKLHETLITISKRSNLKAFV-IDFFCNPAFQ-VSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRE 168 (481)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~pD~VI-~D~~~~~~~~-~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 168 (481)
..+...++.+ +||++| ++.=+++... -+ ++.|||.+.+..-
T Consensus 113 --------~~v~rFl~~~----~P~l~Ii~EtElWPnli~e~-~~~~~p~~LvNaR------------------------ 155 (419)
T COG1519 113 --------IAVRRFLRKW----RPKLLIIMETELWPNLINEL-KRRGIPLVLVNAR------------------------ 155 (419)
T ss_pred --------HHHHHHHHhc----CCCEEEEEeccccHHHHHHH-HHcCCCEEEEeee------------------------
Confidence 1344566777 999877 4443444444 55 8899999996320
Q ss_pred cCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhh-hcccceEEEcCchhhhHHHHHHHHcccCCCCCCCCCeEE
Q 042987 169 LGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQ-MAKSAGVIVNTFELLEERAIKAMLEGQCTPGETSPPLYC 247 (481)
Q Consensus 169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~v~~ 247 (481)
+.++....+.......+. ..+-+.++.-+-.+.+. +.+.. .++|..
T Consensus 156 ----------------------LS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R-----f~~LG------a~~v~v 202 (419)
T COG1519 156 ----------------------LSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR-----FRSLG------AKPVVV 202 (419)
T ss_pred ----------------------echhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH-----HHhcC------CcceEE
Confidence 001111111111111122 23345555544333332 22221 145777
Q ss_pred eCcccCCCCCCCCCCCcch---hhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh-C-CCeEEEEEeCCCCCCcc
Q 042987 248 IGPVVGRGNGENRGRDRHE---CLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER-S-GVKFLWVVRAPAPDSIE 322 (481)
Q Consensus 248 vGpl~~~~~~~~~~~~~~~---l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~ 322 (481)
+|-+=....... ..+.. +...++.. + .+.|..+|... ..+.+.....+|.+ . +...||+- .+...-..
T Consensus 203 ~GNlKfd~~~~~--~~~~~~~~~r~~l~~~--r-~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVP-RHpERf~~ 275 (419)
T COG1519 203 TGNLKFDIEPPP--QLAAELAALRRQLGGH--R-PVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVP-RHPERFKA 275 (419)
T ss_pred ecceeecCCCCh--hhHHHHHHHHHhcCCC--C-ceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEec-CChhhHHH
Confidence 887744433211 12222 22333332 2 56666666332 22224445555544 2 45566653 32100000
Q ss_pred cccc-ccccCchhhHhh----hcCCCeEeecccchh-hhhcccCcc----eeeeccCchhHHHhHhcCCcEEecccccch
Q 042987 323 NRSS-LESLLPEGFLDR----TKDRGLVVESWAPQV-EVLNHESVG----GFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 323 ~~~~-~~~~lp~~~~~~----~~~~~v~v~~~~p~~-~ll~~~~~~----~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ 392 (481)
+... ....+.-....+ ....+|++.|-+--+ .+++-+++. -++-+||+| ..|++++|+|+|.=|+..-|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 0000 000011000000 112255555655433 344444441 134588887 68999999999999999999
Q ss_pred hHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHH
Q 042987 393 KMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAA 452 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~ 452 (481)
.+-++++. .-|.|+.++. .+.+.+++..+++|++ .++|.+++.++-+..+
T Consensus 355 ~ei~~~l~-~~ga~~~v~~---------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 355 SDIAERLL-QAGAGLQVED---------ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHH-hcCCeEEECC---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 99999995 5599988854 6778888888888766 4566666666666555
No 87
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.54 E-value=8.7e-05 Score=73.93 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCCeEeecccchh-hhhcccCcceee--ec--cCch-hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCc
Q 042987 341 DRGLVVESWAPQV-EVLNHESVGGFV--TH--CGWN-SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 341 ~~~v~v~~~~p~~-~ll~~~~~~~~I--~H--gG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
.++|.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. . +.-|.|..+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--~- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--A- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC--C-
Confidence 4578888999864 58889998 66 32 3543 6999999999999998643321 1 1226676664 2
Q ss_pred cCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 415 KDRLVSAAELEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
+++++.++|.++++|++ .+.+.+++++.
T Consensus 348 -----~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 348 -----DPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred -----CHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 68999999999999876 34455555443
No 88
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.54 E-value=2.5e-05 Score=75.63 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=105.7
Q ss_pred CCeEEeC-cccCCCCCCCCCCCcchhhhh-hcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh-----CCCeEEEEEeC
Q 042987 243 PPLYCIG-PVVGRGNGENRGRDRHECLSW-LDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER-----SGVKFLWVVRA 315 (481)
Q Consensus 243 ~~v~~vG-pl~~~~~~~~~~~~~~~l~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~ 315 (481)
-++.||| |+....... .......+. ++. ++++|.+--||-.+.=...+..++++++. .+.+|++.+..
T Consensus 153 ~~~~~VGHPl~d~~~~~---~~~~~~~~~~l~~--~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~ 227 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPE---PDRAEAREKLLDP--DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP 227 (373)
T ss_pred CCeEEECCcchhhhccC---CCHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5799999 988765432 122233333 343 44599999999763322333334555433 35566655432
Q ss_pred CCCCCccccccccccCchhhHhhh--cCCCeEe-ecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc-ccc
Q 042987 316 PAPDSIENRSSLESLLPEGFLDRT--KDRGLVV-ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL-YAE 391 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~v-~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~-~~D 391 (481)
. . . .+-+.+.. ...++.+ ...-.-.+++..+++ .+.-.|. .|+|+..+|+|||++=- ..=
T Consensus 228 ~---------~-~---~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~l 291 (373)
T PF02684_consen 228 E---------V-H---EELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPL 291 (373)
T ss_pred H---------H-H---HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHH
Confidence 1 0 0 01011111 1112222 122234568888888 7776664 67899999999998733 223
Q ss_pred hhHHHHHHHHHhc-ee-----------eEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCC
Q 042987 392 QKMIRAVVVEEMK-VG-----------LAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGG 459 (481)
Q Consensus 392 Q~~na~~v~~~~G-~G-----------~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g 459 (481)
.+..|+++.+ .. +| ..+-.++ .+++.|.+++.++++|++ .++..+...+.+++..+.+.
T Consensus 292 t~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~-----~~~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~ 362 (373)
T PF02684_consen 292 TYFIAKRLVK-VKYISLPNIIAGREVVPELIQED-----ATPENIAAELLELLENPE---KRKKQKELFREIRQLLGPGA 362 (373)
T ss_pred HHHHHHHhhc-CCEeechhhhcCCCcchhhhccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhcc
Confidence 4445555532 12 11 0111123 799999999999999987 45555555555555555566
Q ss_pred ChHH
Q 042987 460 SSRV 463 (481)
Q Consensus 460 ~~~~ 463 (481)
++..
T Consensus 363 ~~~~ 366 (373)
T PF02684_consen 363 SSRA 366 (373)
T ss_pred CCHH
Confidence 5543
No 89
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.50 E-value=0.00018 Score=69.51 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=75.2
Q ss_pred EEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCeEeecccchhh---
Q 042987 280 LFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT--KDRGLVVESWAPQVE--- 354 (481)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~v~~~~p~~~--- 354 (481)
+.+..|... ..+....+++++++.+.++++.-.+.. ...+ ....... ..+++.+.+++++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----------~~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~ 239 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----------PDYF-YREIAPELLDGPDIEYLGEVGGAEKAE 239 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----------HHHH-HHHHHHhcccCCcEEEeCCCCHHHHHH
Confidence 344457764 233455677788888877665433210 0000 1111111 246888889998754
Q ss_pred hhcccCcceeee----ccC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhc-eeeEeecCCccCcccCHHHHHHHH
Q 042987 355 VLNHESVGGFVT----HCG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMK-VGLAVTRSEEKDRLVSAAELEQRV 428 (481)
Q Consensus 355 ll~~~~~~~~I~----HgG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~l~~~i 428 (481)
++..+++ +|. +-| ..++.||+++|+|+|+....+ +...+ +. | .|...+ ..+++.+++
T Consensus 240 ~~~~~d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i-~~-~~~g~l~~---------~~~~l~~~l 302 (335)
T cd03802 240 LLGNARA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVV-ED-GVTGFLVD---------SVEELAAAV 302 (335)
T ss_pred HHHhCcE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhhe-eC-CCcEEEeC---------CHHHHHHHH
Confidence 6788888 553 234 347999999999999876532 33344 34 4 555542 278899999
Q ss_pred HHHhcC
Q 042987 429 SELMDS 434 (481)
Q Consensus 429 ~~~l~~ 434 (481)
.++++.
T Consensus 303 ~~l~~~ 308 (335)
T cd03802 303 ARADRL 308 (335)
T ss_pred HHHhcc
Confidence 888653
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.49 E-value=0.00055 Score=67.53 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCeEeecccch-hhhhcccCcceeee--c--cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 342 RGLVVESWAPQ-VEVLNHESVGGFVT--H--CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 342 ~~v~v~~~~p~-~~ll~~~~~~~~I~--H--gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
+++.+.++..+ ..++..+++ +|. + |-..++.||+++|+|+|+....+ +...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeCC-----
Confidence 34555555433 468899998 663 2 44568999999999999976543 44455 34246777766
Q ss_pred cccCHHHHHHHHHHHhcCch-hHHHHHHHHH
Q 042987 417 RLVSAAELEQRVSELMDSEK-GRAVKERAVA 446 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~ 446 (481)
-+.+++.++|.++++|+. .+.+.+++++
T Consensus 323 --~d~~~la~~i~~l~~~~~~~~~~~~~a~~ 351 (374)
T TIGR03088 323 --GDAVALARALQPYVSDPAARRAHGAAGRA 351 (374)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 368999999999998775 2334444443
No 91
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.45 E-value=1.4e-06 Score=70.12 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=79.9
Q ss_pred EEEEecCCCcCCCH---HHHHHHHHHHHhCCC-eEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeE--eecccch
Q 042987 279 VLFLCFGSLGSFSS---KQLKEMAIGLERSGV-KFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLV--VESWAPQ 352 (481)
Q Consensus 279 ~v~vs~GS~~~~~~---~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~--v~~~~p~ 352 (481)
.+||+-||....+. -.-.+..+.|++.|. +.|..+|.+.. ..++......+..++. ..+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----------~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----------FFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----------CCCCHHHhhcccCCeEEEEEecCcc
Confidence 79999999762111 112235667777765 66777776521 1122222222333333 3456775
Q ss_pred -hhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc----ccchhHHHHHHHHHhceeeEeecC
Q 042987 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 353 -~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
.+..+.+++ +|.|+|+||++|.|..|+|.|+++- -..|-.-|..+++. |-=..-...
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps 135 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPS 135 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeecc
Confidence 566777888 9999999999999999999999996 46899999999654 765555443
No 92
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.44 E-value=0.00048 Score=68.68 Aligned_cols=112 Identities=22% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCCeEeecccchhh---hhcccCcceeeec---------cCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceee
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTH---------CGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~H---------gG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
.+++.+.+|+|+.+ ++..+++ +|.- -|. ++++||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 35788889999754 7888888 7753 244 56899999999999976543 33445 4424677
Q ss_pred EeecCCccCcccCHHHHHHHHHHHhc-Cch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042987 408 AVTRSEEKDRLVSAAELEQRVSELMD-SEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~~i~~~l~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 473 (481)
.++. -+.+++.++|.++++ |++ .+.+.+++++..+ +.-+.....+++.+.+.
T Consensus 351 lv~~-------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~-------~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE-------NDAQALAQRLAAFSQLDTDELAPVVKRAREKVE-------TDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC-------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHHh
Confidence 7766 369999999999998 776 3444444443332 23444455556655544
No 93
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.35 E-value=0.0014 Score=64.12 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=51.9
Q ss_pred CCCeEeecccchhh---hhcccCcceeeeccCc-----hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCGW-----NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~HgG~-----gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
.++|.+.+++++.+ ++..+++ ++.+.-. +++.||+++|+|+|+....+. ...+ +. .|...+..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~-~~--~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVL-GD--KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceee-cC--CeeEecCc
Confidence 46888889998864 5666777 6655433 478999999999998765432 1222 22 23333332
Q ss_pred CccCcccCHHHHHHHHHHHhcCch
Q 042987 413 EEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
+ . +.+++.++++|++
T Consensus 318 ~-------~--l~~~i~~l~~~~~ 332 (363)
T cd04955 318 D-------D--LASLLEELEADPE 332 (363)
T ss_pred h-------H--HHHHHHHHHhCHH
Confidence 1 2 9999999998875
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=0.0017 Score=68.44 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCeEeecccchh-hhhcccCcceeee---ccC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 341 DRGLVVESWAPQV-EVLNHESVGGFVT---HCG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 341 ~~~v~v~~~~p~~-~ll~~~~~~~~I~---HgG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.++|.+.+|.+.. .++..+++ +|. +.| -+++.||+++|+|+|+....+ ....| +.-..|..++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV-~dg~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAV-QEGVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHc-cCCCCEEEeCCCC--
Confidence 3578888888753 58888988 665 445 458899999999999986532 44455 4523688887766
Q ss_pred CcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Q 042987 416 DRLVSAAELEQRVSELMDSEK-GRAVKERAVAMK 448 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~ 448 (481)
.+.+++.+++.+++.+.. ...+++++++..
T Consensus 644 ---~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 644 ---VTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred ---CChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 566777777777765321 122665554443
No 95
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=0.00045 Score=65.81 Aligned_cols=335 Identities=16% Similarity=0.079 Sum_probs=171.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTL 80 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (481)
|++.-+++-+|++=.+.-+-+|.+++.+.+ +.+..++.+.-+...- ...+..+- ..+..++..+.-
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~-~~~~~vi~TGQH~d~e-m~~~~le~----------~~i~~pdy~L~i-- 66 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDP-DFELIVIHTGQHRDYE-MLDQVLEL----------FGIRKPDYDLNI-- 66 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCC-CCceEEEEecccccHH-HHHHHHHH----------hCCCCCCcchhc--
Confidence 544445555699999999999999999884 3555555555443111 11111221 122211110111
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEE--ECCCCcchHHhhhhhcCCceEEEeccchhhHhhHhhhccc
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFV--IDFFCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTL 158 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI--~D~~~~~~~~~A~~~lgiP~v~~~~~~~~~~~~~~~~p~~ 158 (481)
......+.+.+..+...+.+++++. +||+|+ .|-....++.+||-+.+||+.-+-..-
T Consensus 67 ---~~~~~tl~~~t~~~i~~~~~vl~~~----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl------------- 126 (383)
T COG0381 67 ---MKPGQTLGEITGNIIEGLSKVLEEE----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL------------- 126 (383)
T ss_pred ---cccCCCHHHHHHHHHHHHHHHHHhh----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-------------
Confidence 1112234556666778888898888 999988 454455553444399999988864311
Q ss_pred ccccCccccccCcccccCCCCCCCCcccCCCcccCCCchHHHHHHHHHhhhcccceEEEcCchhhhHHHHHHHHcccCCC
Q 042987 159 HKNTTKSFRELGSTLLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGVIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 238 (481)
...... +|.-+ ++. .. ..-++..+.++- ... .++...
T Consensus 127 ---------------------Rt~~~~-~PEE~----NR~---l~-----~~~S~~hfapte--~ar---~nLl~E---- 163 (383)
T COG0381 127 ---------------------RTGDLY-FPEEI----NRR---LT-----SHLSDLHFAPTE--IAR---KNLLRE---- 163 (383)
T ss_pred ---------------------ccCCCC-CcHHH----HHH---HH-----HHhhhhhcCChH--HHH---HHHHHc----
Confidence 000000 11100 000 00 000111112211 111 111111
Q ss_pred CCCCCCeEEeCcccCCCCCCC--CCCCcchhhh--hhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHH----hCCCeEE
Q 042987 239 GETSPPLYCIGPVVGRGNGEN--RGRDRHECLS--WLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLE----RSGVKFL 310 (481)
Q Consensus 239 ~~~~~~v~~vGpl~~~~~~~~--~~~~~~~l~~--~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~----~~~~~~i 310 (481)
|.+-.++..+|-...+.-... +...+.+... +.+.. +..++||+=-..+.. +.++.+.+++. .. ..+.
T Consensus 164 G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~--~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~ 239 (383)
T COG0381 164 GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKD--KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVI 239 (383)
T ss_pred CCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhcccc--CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCce
Confidence 111134667774332211100 0011112221 22222 238888865555544 44555555543 33 2333
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcC-CCeEeec---ccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEec
Q 042987 311 WVVRAPAPDSIENRSSLESLLPEGFLDRTKD-RGLVVES---WAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~v~v~~---~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~ 386 (481)
++++-+.. ..+-+-...+++. +++.+.+ |.+...++.++-+ ++|-.|. -.-||-..|+|.+++
T Consensus 240 viyp~H~~----------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~l 306 (383)
T COG0381 240 VIYPVHPR----------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVL 306 (383)
T ss_pred EEEeCCCC----------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEee
Confidence 44443311 0011101123332 3565544 6677889999988 9999874 466999999999999
Q ss_pred ccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHH
Q 042987 387 PLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAV 445 (481)
Q Consensus 387 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~ 445 (481)
=...+||. ++ +. |.-+.+. .+.+.|.+++.+++++++ ..++.+
T Consensus 307 R~~TERPE---~v-~a-gt~~lvg--------~~~~~i~~~~~~ll~~~~---~~~~m~ 349 (383)
T COG0381 307 RDTTERPE---GV-EA-GTNILVG--------TDEENILDAATELLEDEE---FYERMS 349 (383)
T ss_pred ccCCCCcc---ce-ec-CceEEeC--------ccHHHHHHHHHHHhhChH---HHHHHh
Confidence 99999994 33 23 4333333 367999999999999876 554433
No 96
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.25 E-value=0.00041 Score=67.71 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=60.0
Q ss_pred CCCeEeecccchh---hhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+....+ ....+ . ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~--~~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-G--DAALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-c--CceeeeCC--
Confidence 4688888999875 46788887 5533 33458999999999999865422 12222 2 23555554
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAV 445 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~ 445 (481)
-+.+++.++|.++++|++ .+.+.++++
T Consensus 321 -----~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 -----LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 368999999999998887 233344333
No 97
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.24 E-value=0.0025 Score=63.17 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=83.0
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhh---c--CCCeEe-eccc
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT---K--DRGLVV-ESWA 350 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~--~~~v~v-~~~~ 350 (481)
++++..|.... ...+..++++++.. +..+++..++... ..+-+.+.+.. . .+++.. .+++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT----------PEVAEEVRQAVALLDRNRTGIIWINKML 269 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc----------HHHHHHHHHHHHHhccccCceEEecCCC
Confidence 55666677652 23355566666654 4555554443210 00111111111 1 123443 3577
Q ss_pred chh---hhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHH
Q 042987 351 PQV---EVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAE 423 (481)
Q Consensus 351 p~~---~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (481)
++. .++..+|+ +|.- +...++.||+++|+|+|+.... .....+ +.-..|..++..+. +..-..+.
T Consensus 270 ~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~~~-~~~~~~~~ 341 (388)
T TIGR02149 270 PKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPDNS-DADGFQAE 341 (388)
T ss_pred CHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCCCC-cccchHHH
Confidence 754 47888998 7753 2245779999999999997543 344555 34357888776440 00001288
Q ss_pred HHHHHHHHhcCch-hHHHHHHHHHH
Q 042987 424 LEQRVSELMDSEK-GRAVKERAVAM 447 (481)
Q Consensus 424 l~~~i~~~l~~~~-~~~~~~~a~~l 447 (481)
+.++|.++++|++ .+.+.+++++.
T Consensus 342 l~~~i~~l~~~~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 342 LAKAINILLADPELAKKMGIAGRKR 366 (388)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999998876 34455555443
No 98
>PLN00142 sucrose synthase
Probab=98.20 E-value=0.0025 Score=67.46 Aligned_cols=70 Identities=13% Similarity=0.271 Sum_probs=45.6
Q ss_pred eeec---cCch-hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH----hcCc
Q 042987 364 FVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL----MDSE 435 (481)
Q Consensus 364 ~I~H---gG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~----l~~~ 435 (481)
||.- -|.| ++.||+++|+|+|+....+ ....| +.-.-|..++.. +.+++.++|.++ ++|+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV~P~-------D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHIDPY-------HGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeCCC-------CHHHHHHHHHHHHHHhcCCH
Confidence 7753 4544 8999999999999975543 44455 452468888773 577777777654 4676
Q ss_pred h-hHHHHHHHH
Q 042987 436 K-GRAVKERAV 445 (481)
Q Consensus 436 ~-~~~~~~~a~ 445 (481)
+ .+.|.++++
T Consensus 738 ~lr~~mg~~Ar 748 (815)
T PLN00142 738 SYWNKISDAGL 748 (815)
T ss_pred HHHHHHHHHHH
Confidence 5 344444443
No 99
>PLN02275 transferase, transferring glycosyl groups
Probab=98.17 E-value=0.0042 Score=61.20 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=50.9
Q ss_pred CCeEeec-ccchhh---hhcccCcceeee-c-----cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEee
Q 042987 342 RGLVVES-WAPQVE---VLNHESVGGFVT-H-----CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~v~v~~-~~p~~~---ll~~~~~~~~I~-H-----gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
+|+.+.. |+|+.+ +|..+|+ +|. + -| -+++.||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 3565544 788755 5888998 663 1 12 34799999999999997532 255566 4535787763
Q ss_pred cCCccCcccCHHHHHHHHHHHh
Q 042987 411 RSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l 432 (481)
+.+++.++|.+++
T Consensus 359 ---------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---------SSSELADQLLELL 371 (371)
T ss_pred ---------CHHHHHHHHHHhC
Confidence 2678888887764
No 100
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=0.00046 Score=65.60 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=109.0
Q ss_pred CeEEeC-cccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHh-----CCCeEEEEEeCCC
Q 042987 244 PLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER-----SGVKFLWVVRAPA 317 (481)
Q Consensus 244 ~v~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~ 317 (481)
+..||| |+....+-. .....+.+-+....++.++.+--||-.+.=...+..+.++.+. .+.+|+.-+...
T Consensus 157 ~~~yVGHpl~d~i~~~---~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~- 232 (381)
T COG0763 157 PCTYVGHPLADEIPLL---PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA- 232 (381)
T ss_pred CeEEeCChhhhhcccc---ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-
Confidence 489999 887765421 2233344444344445599999999764333333334444433 356776654332
Q ss_pred CCCccccccccccCchhhHhhhcCCCe-Eeeccc-c-h-hhhhcccCcceeeeccCchhHHHhHhcCCcEEecccc-cch
Q 042987 318 PDSIENRSSLESLLPEGFLDRTKDRGL-VVESWA-P-Q-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY-AEQ 392 (481)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~~v-~v~~~~-p-~-~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~-~DQ 392 (481)
.. +...+.....+. ...-++ + + ...+..+|+ .+.-+|. -++|+.-+|+|||+.=-. .=-
T Consensus 233 ---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it 296 (381)
T COG0763 233 ---------KY----RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPIT 296 (381)
T ss_pred ---------HH----HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHH
Confidence 00 111111111111 011111 2 2 247788888 7777775 467999999999986211 111
Q ss_pred hHHHHHHHHHhc--------eeeE----eecCCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCC
Q 042987 393 KMIRAVVVEEMK--------VGLA----VTRSEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGG 459 (481)
Q Consensus 393 ~~na~~v~~~~G--------~G~~----l~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g 459 (481)
+..++++. ++. +|.. +-.+. .+++.|.+++..++.|+. .+++++...++.+.++ +++
T Consensus 297 ~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~-----~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~ 366 (381)
T COG0763 297 YFIAKRLV-KLPYVSLPNILAGREIVPELIQED-----CTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDP 366 (381)
T ss_pred HHHHHHhc-cCCcccchHHhcCCccchHHHhhh-----cCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCc
Confidence 22333332 111 1111 11133 679999999999999884 4567777777777666 345
Q ss_pred ChHHHHHHHHHHH
Q 042987 460 SSRVALDNLVESF 472 (481)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (481)
++..+.+.+++.+
T Consensus 367 ~~e~aA~~vl~~~ 379 (381)
T COG0763 367 ASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHHh
Confidence 6656666666554
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.98 E-value=0.0026 Score=64.81 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=46.6
Q ss_pred hhhcccCcceeeec---cCch-hHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 354 EVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 354 ~ll~~~~~~~~I~H---gG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
.++..+++ +|.- -|.| +.+||+++|+|.|+.-..+ |.-.+...-.+. +.|..++. -+++++.++
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-------~d~~~la~~ 421 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-------FNAEDLLRA 421 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-------CCHHHHHHH
Confidence 47788888 7753 3544 7889999999999875432 211111000112 67888776 468999999
Q ss_pred HHHHhc
Q 042987 428 VSELMD 433 (481)
Q Consensus 428 i~~~l~ 433 (481)
|.++++
T Consensus 422 i~~~l~ 427 (466)
T PRK00654 422 LRRALE 427 (466)
T ss_pred HHHHHH
Confidence 999886
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.96 E-value=0.0031 Score=64.45 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=71.9
Q ss_pred EEEEecCCCcC-CCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEee-cccch--
Q 042987 279 VLFLCFGSLGS-FSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK--DRGLVVE-SWAPQ-- 352 (481)
Q Consensus 279 ~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v~-~~~p~-- 352 (481)
++++..|.+.. ...+.+...+..+.+.+.+++++ |.+. ..+-+.+.+... .+++.+. ++...
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVIL-GSGD-----------PEYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEE-ecCC-----------HHHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 66667788762 23444444444444445665554 3320 001111111111 3466543 44322
Q ss_pred hhhhcccCcceeeec---cCc-hhHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHH
Q 042987 353 VEVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQ 426 (481)
Q Consensus 353 ~~ll~~~~~~~~I~H---gG~-gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (481)
..++..+++ ++.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+. |.|..++. -+.+++.+
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-------~~~~~l~~ 434 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-------YNADALLA 434 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-------CCHHHHHH
Confidence 246788888 7743 122 37789999999999876532 211111100012 57888877 46899999
Q ss_pred HHHHHhc
Q 042987 427 RVSELMD 433 (481)
Q Consensus 427 ~i~~~l~ 433 (481)
++.++++
T Consensus 435 ~i~~~l~ 441 (476)
T cd03791 435 ALRRALA 441 (476)
T ss_pred HHHHHHH
Confidence 9999885
No 103
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.89 E-value=0.00018 Score=62.30 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=87.7
Q ss_pred CCcEEEEecCCCcC-CCHHHHHHHHHHHHh--CCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccch
Q 042987 276 SRSVLFLCFGSLGS-FSSKQLKEMAIGLER--SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQ 352 (481)
Q Consensus 276 ~~~~v~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~ 352 (481)
++..+++..|+... -..+.+-.++.-+.. ...-.++.+|.. .....+-.........+++.+.+++++
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG---------EYKKELKNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC---------CHHHHHHHHHHHTTCGTTEEEEESHSH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc---------ccccccccccccccccccccccccccc
Confidence 34477777888763 334444333333321 333444555521 000101111111122357778888872
Q ss_pred ---hhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHH
Q 042987 353 ---VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELE 425 (481)
Q Consensus 353 ---~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~ 425 (481)
..++..+++ +|+. |...++.||+++|+|+|+.- -..+...+ ..-+.|..++. .+.+++.
T Consensus 84 ~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~~-------~~~~~l~ 149 (172)
T PF00534_consen 84 DELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFDP-------NDIEELA 149 (172)
T ss_dssp HHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEEST-------TSHHHHH
T ss_pred ccccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeCC-------CCHHHHH
Confidence 458889998 8877 66779999999999999853 44455566 45356888877 4799999
Q ss_pred HHHHHHhcCch-hHHHHHHHHH
Q 042987 426 QRVSELMDSEK-GRAVKERAVA 446 (481)
Q Consensus 426 ~~i~~~l~~~~-~~~~~~~a~~ 446 (481)
++|.+++.+++ .+.+.+++++
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcC
Confidence 99999998776 3445554443
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.89 E-value=0.0089 Score=59.94 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCCeEeecccchh---hhhcccCcceeeecc---C-chhHHHhHhcCCcEEecccccchhHHHHHHHH---HhceeeEee
Q 042987 341 DRGLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVE---EMKVGLAVT 410 (481)
Q Consensus 341 ~~~v~v~~~~p~~---~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~~G~G~~l~ 410 (481)
.++|.+.+++|+. .+|..+++ +|+-. | .-++.||+++|+|.|+.-..+.- ...+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 3578888998865 47888888 66421 2 23789999999999986543211 1122 2 21456553
Q ss_pred cCCccCcccCHHHHHHHHHHHhcCch
Q 042987 411 RSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
-+++++.+++.++++++.
T Consensus 377 --------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 --------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred --------CCHHHHHHHHHHHHhCCH
Confidence 258899999999998654
No 105
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.83 E-value=0.026 Score=55.62 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCeEeeccc--chh---hhhcccCcceeeecc---C-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecC
Q 042987 342 RGLVVESWA--PQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 342 ~~v~v~~~~--p~~---~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
+++.+.++. ++. .++..+++ +|.-. | ..++.||+++|+|+|+....+ ....+ +.-..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC--
Confidence 456666765 332 47788888 77543 2 348999999999999976532 22334 3324565443
Q ss_pred CccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHH
Q 042987 413 EEKDRLVSAAELEQRVSELMDSEK-GRAVKERAVA 446 (481)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~ 446 (481)
+.+.+..+|.+++++++ .+.|.+++++
T Consensus 323 -------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 -------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred -------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 24567779999998776 2344444444
No 106
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.82 E-value=0.00068 Score=67.73 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCeEeecccchhh---hhcccCcceeeeccC----chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..++.+.+|+++.+ ++..+++.++|...- -++++||+++|+|+|+....+ ....+ +.-+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHh-cCCCcEEEeCCC-
Confidence 34688889999764 455444444876553 457999999999999865433 45566 452478877653
Q ss_pred ccCcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 414 EKDRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
.+.+++.++|.++++|++ .+.|+++|++. +++.-+...+.++|
T Consensus 362 -----~~~~~la~~I~~ll~~~~~~~~m~~~ar~~-------~~~~f~~~~~~~~~ 405 (407)
T cd04946 362 -----PTPNELVSSLSKFIDNEEEYQTMREKAREK-------WEENFNASKNYREF 405 (407)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHHcCHHHhHHHh
Confidence 378999999999998776 33444444443 33344444444444
No 107
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.82 E-value=0.0076 Score=59.32 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCCeEeecccchh-hhhcccCcceeeec--cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCc
Q 042987 341 DRGLVVESWAPQV-EVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDR 417 (481)
Q Consensus 341 ~~~v~v~~~~p~~-~ll~~~~~~~~I~H--gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
.+++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+.....- ....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHc-ccCCCceEeCC------
Confidence 3467676776654 58899998444444 334589999999999999754311 23344 33257777766
Q ss_pred ccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH
Q 042987 418 LVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAA 451 (481)
Q Consensus 418 ~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~ 451 (481)
-+.+++.++|.++++|++ .+.+.+++++.++..
T Consensus 330 -~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 -GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred -CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 469999999999999875 456667666664443
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.77 E-value=0.02 Score=58.51 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCeEeecccchhhhhcccCcceeee---ccC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC-cc
Q 042987 341 DRGLVVESWAPQVEVLNHESVGGFVT---HCG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE-EK 415 (481)
Q Consensus 341 ~~~v~v~~~~p~~~ll~~~~~~~~I~---HgG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~ 415 (481)
.++|...++.+...++..+++ +|. .-| ..+++||+++|+|+|+.-..+ -+...+ +.-.-|..++... ..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcccc
Confidence 356777788888889999998 775 234 358899999999999975431 123444 3423577666321 00
Q ss_pred CcccC-HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 042987 416 DRLVS-AAELEQRVSELMDSEKGRAVKERAVAMKEA 450 (481)
Q Consensus 416 ~~~~~-~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~ 450 (481)
++ -+ .+.++++|.++++++..+.|.+++++.++.
T Consensus 449 d~-~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 449 DE-DQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred ch-hHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 00 12 778999999999644455666777665543
No 109
>PLN02949 transferase, transferring glycosyl groups
Probab=97.73 E-value=0.068 Score=54.13 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCCeEeecccchhh---hhcccCcceeee---ccCch-hHHHhHhcCCcEEecccccchhHHHHHHHHH-hc-eeeEeec
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEE-MK-VGLAVTR 411 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I~---HgG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-~G-~G~~l~~ 411 (481)
.++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|.|+....+-- ...+.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 45788889998654 6788887 763 23334 799999999999998653310 0011010 01 22221
Q ss_pred CCccCcccCHHHHHHHHHHHhcC-ch-hHHHHHHHHHHH
Q 042987 412 SEEKDRLVSAAELEQRVSELMDS-EK-GRAVKERAVAMK 448 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~~l~~-~~-~~~~~~~a~~l~ 448 (481)
-+.+++.++|.+++++ ++ .++|.+++++..
T Consensus 407 -------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~ 438 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMRETERLEIAAAARKRA 438 (463)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2588999999999985 33 334555555433
No 110
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00048 Score=54.74 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=72.0
Q ss_pred EEEecCCCcCCCHHH-HHH--HHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecc--cc-hh
Q 042987 280 LFLCFGSLGSFSSKQ-LKE--MAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESW--AP-QV 353 (481)
Q Consensus 280 v~vs~GS~~~~~~~~-~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~--~p-~~ 353 (481)
++|+-||... +... +.. +.+-.+....++|+.+|.+. ..| + ++..+.+| .+ -.
T Consensus 2 ifVTvGstf~-~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------------~kp------v--agl~v~~F~~~~kiQ 60 (161)
T COG5017 2 IFVTVGSTFY-PFNRLVLKIEVLELTELIQEELIVQYGNGD------------IKP------V--AGLRVYGFDKEEKIQ 60 (161)
T ss_pred eEEEecCccc-hHHHHHhhHHHHHHHHHhhhheeeeecCCC------------ccc------c--cccEEEeechHHHHH
Confidence 6889999842 2221 111 33333445668889988641 112 1 12233343 33 34
Q ss_pred hhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc--------chhHHHHHHHHHhceeeEeecCC
Q 042987 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 354 ~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+...+++ +|+|+|.||++.++..++|.|++|-.. .|-..|..++ +++.=+...+.+
T Consensus 61 sli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spte 125 (161)
T COG5017 61 SLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPTE 125 (161)
T ss_pred HHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCCc
Confidence 56676777 999999999999999999999999743 6888888886 557766666543
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.70 E-value=0.00093 Score=66.22 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=77.7
Q ss_pred CCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHh-hhcCCCeEeecccchhh
Q 042987 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLD-RTKDRGLVVESWAPQVE 354 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~v~v~~~~p~~~ 354 (481)
++.++|.+|.+.....++.+..-.+-|++.+.-.+|....+... ...+-..+.+ .+..+.+++.++.++.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--------EARLRRRFAAHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--------HHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--------HHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence 44599999999999999999999999999888899988764110 1111111111 11134566667777554
Q ss_pred ---hhcccCcceee---eccCchhHHHhHhcCCcEEecccccch-hHHHHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 355 ---VLNHESVGGFV---THCGWNSVLEGVCAGVPMLAWPLYAEQ-KMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 355 ---ll~~~~~~~~I---~HgG~gt~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
.+..+|+ +. ..+|.+|++|||+.|||+|.+|-..=. ..-+..+ ..+|+.-.+.. +.++..+.
T Consensus 355 hl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA~--------s~~eYv~~ 423 (468)
T PF13844_consen 355 HLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIAD--------SEEEYVEI 423 (468)
T ss_dssp HHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-S--------SHHHHHHH
T ss_pred HHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcCC--------CHHHHHHH
Confidence 3444665 54 467999999999999999999964322 3344455 67788765544 45554444
Q ss_pred HHHHhcCch
Q 042987 428 VSELMDSEK 436 (481)
Q Consensus 428 i~~~l~~~~ 436 (481)
-.++-+|.+
T Consensus 424 Av~La~D~~ 432 (468)
T PF13844_consen 424 AVRLATDPE 432 (468)
T ss_dssp HHHHHH-HH
T ss_pred HHHHhCCHH
Confidence 445555665
No 112
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.69 E-value=0.036 Score=56.63 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=72.9
Q ss_pred EEEEecCCCcC-CCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCeEeecccchh--
Q 042987 279 VLFLCFGSLGS-FSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT--KDRGLVVESWAPQV-- 353 (481)
Q Consensus 279 ~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~v~~~~p~~-- 353 (481)
++++..|.+.. ...+.+.+.+..+.+.+.+++++ |.+. ....+.+.+.. .+.++.+....+..
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-----------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD-----------PELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC-----------HHHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 56666788763 23444444444444445666554 4320 00111111111 13455554444443
Q ss_pred -hhhcccCcceeeecc---Cch-hHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHH
Q 042987 354 -EVLNHESVGGFVTHC---GWN-SVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQ 426 (481)
Q Consensus 354 -~ll~~~~~~~~I~Hg---G~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (481)
.++..+++ +|.-. |.| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++. -+++++.+
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-------~d~~~la~ 429 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-------YDPGALLA 429 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-------CCHHHHHH
Confidence 47788888 77532 444 7889999999999876532 211110000011 67777776 46889999
Q ss_pred HHHHHhc
Q 042987 427 RVSELMD 433 (481)
Q Consensus 427 ~i~~~l~ 433 (481)
+|.++++
T Consensus 430 ~i~~~l~ 436 (473)
T TIGR02095 430 ALSRALR 436 (473)
T ss_pred HHHHHHH
Confidence 9999886
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.68 E-value=0.0025 Score=63.00 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCeEeecccchhh---hhcccCcceeeecc----Cc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCC
Q 042987 342 RGLVVESWAPQVE---VLNHESVGGFVTHC----GW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 342 ~~v~v~~~~p~~~---ll~~~~~~~~I~Hg----G~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++.+.+++|+.+ ++..+++ +|... |. .++.||+++|+|+|+....+ +...+ +.-..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEeCC-
Confidence 4677889998644 6888998 77533 32 57789999999999986532 34445 342467644332
Q ss_pred ccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 042987 414 EKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 414 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
.+.+++.++|.++++|++...+.+++++. +.+.-+-....+.+.+.+.+|
T Consensus 329 -----~d~~~la~~I~~ll~d~~~~~~~~~ar~~-------~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 329 -----MTSDSIISDINRTLADPELTQIAEQAKDF-------VFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred -----CCHHHHHHHHHHHHcCHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHHh
Confidence 47999999999999988622233333322 222344445566666666554
No 114
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.59 E-value=0.1 Score=52.38 Aligned_cols=73 Identities=7% Similarity=0.042 Sum_probs=50.5
Q ss_pred eecccchhhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCH
Q 042987 346 VESWAPQVEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSA 421 (481)
Q Consensus 346 v~~~~p~~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 421 (481)
+.++....+++...++ ||.- +=..+++||+++|+|+|+.-..+ + ..+ ..-+-|... + +.
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~---~------~~ 350 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY---D------DG 350 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec---C------CH
Confidence 4466666778999988 9877 34568899999999999985443 2 333 221333333 2 47
Q ss_pred HHHHHHHHHHhcCc
Q 042987 422 AELEQRVSELMDSE 435 (481)
Q Consensus 422 ~~l~~~i~~~l~~~ 435 (481)
+++.+++.++|+++
T Consensus 351 ~~~a~ai~~~l~~~ 364 (462)
T PLN02846 351 KGFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHHccC
Confidence 78999999998754
No 115
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.55 E-value=0.0006 Score=66.60 Aligned_cols=125 Identities=12% Similarity=0.194 Sum_probs=82.6
Q ss_pred EEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchh---hhh
Q 042987 280 LFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---EVL 356 (481)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~---~ll 356 (481)
.++..|.+. ....+..++++++..+.+++++ |.+. ..+.+.+ ...+||.+.+++|+. .++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g~-------------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~ 259 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDGP-------------ELDRLRA-KAGPNVTFLGRVSDEELRDLY 259 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECCh-------------hHHHHHh-hcCCCEEEecCCCHHHHHHHH
Confidence 344557765 2344667788888877776554 4320 0112222 235689899999974 478
Q ss_pred cccCcceeee--ccCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 357 NHESVGGFVT--HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 357 ~~~~~~~~I~--HgG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
..+++ +|. .-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++. -+.+.+.++|.++++
T Consensus 260 ~~ad~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~-------~~~~~la~~i~~l~~ 325 (351)
T cd03804 260 ARARA--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE-------QTVESLAAAVERFEK 325 (351)
T ss_pred HhCCE--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC-------CCHHHHHHHHHHHHh
Confidence 88898 553 3343 35779999999999986543 23334 33257888776 358889999999998
Q ss_pred Cc
Q 042987 434 SE 435 (481)
Q Consensus 434 ~~ 435 (481)
|+
T Consensus 326 ~~ 327 (351)
T cd03804 326 NE 327 (351)
T ss_pred Cc
Confidence 87
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.52 E-value=0.026 Score=57.63 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=63.0
Q ss_pred CCCeEeecccchhhhhcccCcceeeec----cCchhHHHhHhcCCcEEecccccchhHHHHHHHHH----hc-eeeEeec
Q 042987 341 DRGLVVESWAPQVEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEE----MK-VGLAVTR 411 (481)
Q Consensus 341 ~~~v~v~~~~p~~~ll~~~~~~~~I~H----gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~G-~G~~l~~ 411 (481)
.++|.+.+......++..+++ +|.- |--+++.||+++|+|+|+... ......+.+. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 357777776666778888888 6644 334689999999999999543 3334444221 12 6777766
Q ss_pred CCccCcccCHHHHHHHHHHHhcCch-hHHHHHHHH
Q 042987 412 SEEKDRLVSAAELEQRVSELMDSEK-GRAVKERAV 445 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~ 445 (481)
-+.+++.++|.++++|++ .+.+.++++
T Consensus 427 -------~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 427 -------ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred -------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 468999999999999886 334444444
No 117
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.47 E-value=0.14 Score=51.05 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=59.7
Q ss_pred hhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeE-eecCCccCcccCHHHHHHHHHHHh
Q 042987 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLA-VTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 354 ~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
.+++++++ +|..==+ ++.-|+..|||.+.+++ | +-....+ +.+|.... .+... ++.++|.+.+.+++
T Consensus 323 ~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~-----l~~~~Li~~v~~~~ 390 (426)
T PRK10017 323 KILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRH-----LLDGSLQAMVADTL 390 (426)
T ss_pred HHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhh-----CCHHHHHHHHHHHH
Confidence 68899988 8853322 46678899999999998 3 3333344 56788866 56666 89999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHH
Q 042987 433 DSEKGRAVKERAVAMKEAAA 452 (481)
Q Consensus 433 ~~~~~~~~~~~a~~l~~~~~ 452 (481)
+|.+ ++++..++-.++++
T Consensus 391 ~~r~--~~~~~l~~~v~~~r 408 (426)
T PRK10017 391 GQLP--ALNARLAEAVSRER 408 (426)
T ss_pred hCHH--HHHHHHHHHHHHHH
Confidence 8765 35555444444444
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.46 E-value=0.17 Score=51.61 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=67.4
Q ss_pred CCCeEeecccch-hhhhcccCcceeeec---cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 341 ~~~v~v~~~~p~-~~ll~~~~~~~~I~H---gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.++|.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+.... .+...+. .-..|..++..+
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~-dG~nG~LVp~~D-- 524 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFI-EGVSGFILDDAQ-- 524 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcc-cCCcEEEECCCC--
Confidence 357888888654 347899998 8863 44 55899999999999987653 3445553 425677777633
Q ss_pred CcccCHHHHHHHH---HHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 042987 416 DRLVSAAELEQRV---SELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 416 ~~~~~~~~l~~~i---~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
.+.+.+++ ..+....+ ...++++..++.+.+.-+....++.+.+.+...
T Consensus 525 -----~~aLa~ai~lA~aL~~ll~------~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~ 576 (578)
T PRK15490 525 -----TVNLDQACRYAEKLVNLWR------SRTGICQQTQSFLQERFTVEHMVGTFVKTIASQ 576 (578)
T ss_pred -----hhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 44444444 22222111 112233333333334556556666666665543
No 119
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.43 E-value=0.15 Score=50.29 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCCeEeecccchhh---hhcccCcceee------eccCc-hhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEee
Q 042987 341 DRGLVVESWAPQVE---VLNHESVGGFV------THCGW-NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVT 410 (481)
Q Consensus 341 ~~~v~v~~~~p~~~---ll~~~~~~~~I------~HgG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
.+||...+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 35898899998655 68888883321 12332 358999999999998763 2223 3323 33333
Q ss_pred cCCccCcccCHHHHHHHHHHHhcCch
Q 042987 411 RSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
. -+.+++.++|.+++.++.
T Consensus 324 ~-------~d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 324 A-------DDPEEFVAAIEKALLEDG 342 (373)
T ss_pred C-------CCHHHHHHHHHHHHhcCC
Confidence 3 268999999999876553
No 120
>PLN02316 synthase/transferase
Probab=97.32 E-value=0.39 Score=52.80 Aligned_cols=117 Identities=7% Similarity=-0.068 Sum_probs=65.6
Q ss_pred CCeEeecccchh---hhhcccCcceeeecc---C-chhHHHhHhcCCcEEeccccc--chhHHHH----HHH--HHhcee
Q 042987 342 RGLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYA--EQKMIRA----VVV--EEMKVG 406 (481)
Q Consensus 342 ~~v~v~~~~p~~---~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~--DQ~~na~----~v~--~~~G~G 406 (481)
+++.+....+.. .++..+|+ |+.-. | ..+.+||+++|+|.|+....+ |...... +-. ..-+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 345444333332 47888888 88532 2 348899999999999875532 3222110 000 001467
Q ss_pred eEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042987 407 LAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 472 (481)
...+. .+++.|..+|.+++.+. .+..+.+++..++.+..+-|-...++..++..
T Consensus 978 flf~~-------~d~~aLa~AL~raL~~~-----~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 978 FSFDG-------ADAAGVDYALNRAISAW-----YDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred EEeCC-------CCHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 77776 46889999999998642 22333344444444444444444444444433
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.20 E-value=0.25 Score=51.57 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=52.2
Q ss_pred eEeecccchh-hhhcccCcceeeecc---C-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcc
Q 042987 344 LVVESWAPQV-EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRL 418 (481)
Q Consensus 344 v~v~~~~p~~-~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
+.+.++.++. .++..+++ ||.-+ | ..+++||+++|+|+|+.-..+... + .. |.+-.+. .
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~--~----- 666 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY--K----- 666 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--C-----
Confidence 4555666655 48888888 87632 3 457889999999999987754321 2 22 3332222 2
Q ss_pred cCHHHHHHHHHHHhcCch
Q 042987 419 VSAAELEQRVSELMDSEK 436 (481)
Q Consensus 419 ~~~~~l~~~i~~~l~~~~ 436 (481)
+.+++.++|.++|+++.
T Consensus 667 -D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 -TSEDFVAKVKEALANEP 683 (794)
T ss_pred -CHHHHHHHHHHHHhCch
Confidence 68999999999998774
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.14 E-value=0.002 Score=53.17 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=49.3
Q ss_pred CCCeEeecccchh-hhhcccCcceeeec--cC-chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 341 DRGLVVESWAPQV-EVLNHESVGGFVTH--CG-WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 341 ~~~v~v~~~~p~~-~ll~~~~~~~~I~H--gG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.+++.+.+|++.. .++..+++.+..+. .| -+++.|++++|+|+|+.+.. ....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE-C-----
Confidence 3488888998643 48899999555442 23 47999999999999998762 11222 234788777 3
Q ss_pred cccCHHHHHHHHHHHhcC
Q 042987 417 RLVSAAELEQRVSELMDS 434 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~ 434 (481)
-+++++.++|.++++|
T Consensus 120 --~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 --NDPEELAEAIERLLND 135 (135)
T ss_dssp --T-HHHHHHHHHHHHH-
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 3799999999999865
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.64 E-value=0.013 Score=56.83 Aligned_cols=109 Identities=17% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCeEeecccchhhhh---cccCcceeeecc-------Cc------hhHHHhHhcCCcEEecccccchhHHHHHHHHHhce
Q 042987 342 RGLVVESWAPQVEVL---NHESVGGFVTHC-------GW------NSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKV 405 (481)
Q Consensus 342 ~~v~v~~~~p~~~ll---~~~~~~~~I~Hg-------G~------gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 405 (481)
+||...+|+|+.++. .. +.+++...- .+ +-+.+.|++|+|+|+.+ +...+..|. +-++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~-~~~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIV-ENGL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHH-hCCc
Confidence 588888999987753 33 333332211 11 12677899999999964 455777774 5589
Q ss_pred eeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042987 406 GLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 406 G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 470 (481)
|+.++. .+++.+++.++. +++.++|++|++++++.+++ |..-..++++++.
T Consensus 281 G~~v~~---------~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVDS---------LEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred eEEeCC---------HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 999862 467888888753 44467799999999999984 4555456655544
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.59 E-value=0.21 Score=44.66 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCeEeecccch----hhhhcccCcceeeeccC----chhHHHhHhcCCcEEecccccch
Q 042987 341 DRGLVVESWAPQ----VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 341 ~~~v~v~~~~p~----~~ll~~~~~~~~I~HgG----~gt~~eal~~GvP~l~~P~~~DQ 392 (481)
.+|+.+.++++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 357777787632 224444777 888776 78999999999999998875543
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.51 E-value=0.7 Score=42.98 Aligned_cols=107 Identities=9% Similarity=0.025 Sum_probs=70.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHH
Q 042987 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALV 90 (481)
Q Consensus 11 p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 90 (481)
+-.-|+.-|-.|-++|.++| |+|.+.+-... ..-+++..+ |+.+..+...-+ ..+...+
T Consensus 8 ~n~~hvhfFk~lI~elekkG--~ev~iT~rd~~-----~v~~LLd~y-----gf~~~~Igk~g~---------~tl~~Kl 66 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKG--HEVLITCRDFG-----VVTELLDLY-----GFPYKSIGKHGG---------VTLKEKL 66 (346)
T ss_pred CCcchhhHHHHHHHHHHhCC--eEEEEEEeecC-----cHHHHHHHh-----CCCeEeecccCC---------ccHHHHH
Confidence 44568888999999999999 99988753322 334455555 777666653211 1122222
Q ss_pred HHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEeccc
Q 042987 91 YELGELNNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFTTA 145 (481)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~~~ 145 (481)
.+.. .....+.++..++ +||+.+. -.++....+| --+|+|.+.+.-..
T Consensus 67 ~~~~-eR~~~L~ki~~~~----kpdv~i~-~~s~~l~rva-fgLg~psIi~~D~e 114 (346)
T COG1817 67 LESA-ERVYKLSKIIAEF----KPDVAIG-KHSPELPRVA-FGLGIPSIIFVDNE 114 (346)
T ss_pred HHHH-HHHHHHHHHHhhc----CCceEee-cCCcchhhHH-hhcCCceEEecCCh
Confidence 2222 2334556666666 9999999 5577788899 99999999986544
No 126
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.47 E-value=0.12 Score=52.14 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=81.4
Q ss_pred CCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhH---h--hhcCCCeEeeccc
Q 042987 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFL---D--RTKDRGLVVESWA 350 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~---~--~~~~~~v~v~~~~ 350 (481)
+..+||.+|--....+++.++.-++-|++.+..++|....+... + ..|. + .+.++.|++.+-+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g------e------~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG------E------QRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc------h------HHHHHHHHHhCCCccceeecccc
Confidence 44599999988889999999998888999999999999876211 0 1111 1 1224455554433
Q ss_pred ch-----hhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeec
Q 042987 351 PQ-----VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTR 411 (481)
Q Consensus 351 p~-----~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (481)
.. ...|....++-..+. |+.|.++.|++|||||.+|...---..|.-+--.+|+|-.+.+
T Consensus 825 ~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred chHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 32 122333333335554 7889999999999999999865444444333357799986655
No 127
>PHA01633 putative glycosyl transferase group 1
Probab=96.44 E-value=0.11 Score=49.85 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCCeEee---cccchh---hhhcccCcceeeec---cC-chhHHHhHhcCCcEEeccc------ccch------hHHHHH
Q 042987 341 DRGLVVE---SWAPQV---EVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPL------YAEQ------KMIRAV 398 (481)
Q Consensus 341 ~~~v~v~---~~~p~~---~ll~~~~~~~~I~H---gG-~gt~~eal~~GvP~l~~P~------~~DQ------~~na~~ 398 (481)
.+++.+. +++++. .++..+++ +|.- -| ..+++||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3466665 455543 57888888 8864 24 4478899999999998633 2332 222222
Q ss_pred HHH-HhceeeEeecCCccCcccCHHHHHHHHHHHhcC
Q 042987 399 VVE-EMKVGLAVTRSEEKDRLVSAAELEQRVSELMDS 434 (481)
Q Consensus 399 v~~-~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~ 434 (481)
..+ .-|.|..++. .+++++.++|.++++.
T Consensus 278 ~~~~~~g~g~~~~~-------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIHK-------FQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeecC-------CCHHHHHHHHHHHHhc
Confidence 221 1256666665 6899999999999653
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.74 E-value=0.18 Score=48.42 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||+++-...-||+.=..++.++|+++-|+.+|++++....
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 5899999999999999999999999988899999987533
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.18 Score=50.67 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=87.8
Q ss_pred CCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-----CCCeEeecc
Q 042987 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-----DRGLVVESW 349 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~~v~v~~~ 349 (481)
+++.+||+||+......++.+..=+.-|+..+--++|..+++... + +-..+++... ...+++.+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~------~----~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA------E----INARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH------H----HHHHHHHHHHHcCCChhheeecCC
Confidence 456699999999999999998888888888888899998774111 1 1112222222 234445555
Q ss_pred cch---hhhhcccCcceeee---ccCchhHHHhHhcCCcEEecccccchhH--HHHHHHHHhceeeEeecCCccCcccCH
Q 042987 350 APQ---VEVLNHESVGGFVT---HCGWNSVLEGVCAGVPMLAWPLYAEQKM--IRAVVVEEMKVGLAVTRSEEKDRLVSA 421 (481)
Q Consensus 350 ~p~---~~ll~~~~~~~~I~---HgG~gt~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~ 421 (481)
.|. ..-++-+|+ |.- -||+.|+.|+|..|||+|..+ ++||- |+.-+...+|+-..+..++ +
T Consensus 497 ~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s~-------~ 565 (620)
T COG3914 497 APNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADSR-------A 565 (620)
T ss_pred CCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCCH-------H
Confidence 553 344455665 664 599999999999999999885 67774 5555555556555554422 4
Q ss_pred HHHHHHHH
Q 042987 422 AELEQRVS 429 (481)
Q Consensus 422 ~~l~~~i~ 429 (481)
+-+..++.
T Consensus 566 dYV~~av~ 573 (620)
T COG3914 566 DYVEKAVA 573 (620)
T ss_pred HHHHHHHH
Confidence 44555553
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.54 E-value=2.6 Score=41.10 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=37.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
++|+++-...-||+.=..++.++|+++.|+.+|++++...
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~ 45 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQD 45 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccC
Confidence 5899999999999999999999999999999999997653
No 131
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.48 E-value=2.1 Score=40.22 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+|+++-..+.|++.=..++.++|+++.|+-+|++++...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 589999999999999999999999999999999998763
No 132
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.45 E-value=3.1 Score=41.44 Aligned_cols=61 Identities=25% Similarity=0.253 Sum_probs=41.8
Q ss_pred hhhhcccCcceeeecc----CchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHH
Q 042987 353 VEVLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRV 428 (481)
Q Consensus 353 ~~ll~~~~~~~~I~Hg----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i 428 (481)
..++..+++ ||.-. --.+++||+++|+|+|+....+ - ...+ +. +-|..++.. +.++|++++
T Consensus 301 ~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~---~Eiv-~~-~~G~lv~~~-------d~~~La~~~ 365 (405)
T PRK10125 301 MSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-A---REVL-QK-SGGKTVSEE-------EVLQLAQLS 365 (405)
T ss_pred HHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-h---HHhE-eC-CcEEEECCC-------CHHHHHhcc
Confidence 345666777 77643 3457899999999999998765 2 2334 44 578888774 477777643
No 133
>PRK14098 glycogen synthase; Provisional
Probab=95.36 E-value=0.32 Score=49.76 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=74.0
Q ss_pred EEEEecCCCcCC-CHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchh---h
Q 042987 279 VLFLCFGSLGSF-SSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---E 354 (481)
Q Consensus 279 ~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~---~ 354 (481)
++++..|.+... ..+.+...+..+.+.+.++++ +|.+. ......+ ..+..+. ++++.+....+.. .
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~-------~~~~~~l-~~l~~~~-~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGD-------KEYEKRF-QDFAEEH-PEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCC-------HHHHHHH-HHHHHHC-CCCEEEEEecCHHHHHH
Confidence 566666777632 344444444444444666554 34320 0000111 1111122 3577777777764 5
Q ss_pred hhcccCcceeeecc---Cc-hhHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHH
Q 042987 355 VLNHESVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRV 428 (481)
Q Consensus 355 ll~~~~~~~~I~Hg---G~-gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i 428 (481)
++..+|+ ++.-. |. .+.+||+++|+|.|+....+ |...+ .. +.-+.|...+. .+++.+.++|
T Consensus 378 ~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~-------~d~~~la~ai 445 (489)
T PRK14098 378 AIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD-------YTPEALVAKL 445 (489)
T ss_pred HHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC-------CCHHHHHHHH
Confidence 7888888 77543 22 36789999999988876533 22111 01 11267777766 4689999999
Q ss_pred HHHh
Q 042987 429 SELM 432 (481)
Q Consensus 429 ~~~l 432 (481)
.+++
T Consensus 446 ~~~l 449 (489)
T PRK14098 446 GEAL 449 (489)
T ss_pred HHHH
Confidence 9876
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.34 E-value=3 Score=40.53 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-...-||+.=..++.++|+++-|+.+|++++..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~ 38 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 38 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECc
Confidence 58999999999999999999999999998999999865
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.23 E-value=0.033 Score=42.78 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=44.0
Q ss_pred cchhhhhhcCCCCCcEEEEecCCCcCC---C--HHHHHHHHHHHHhCCCeEEEEEeCC
Q 042987 264 RHECLSWLDSKPSRSVLFLCFGSLGSF---S--SKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 264 ~~~l~~~l~~~~~~~~v~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~ 316 (481)
+..+..|+...+.++.|+||+||.... . ...+..++++++..|..+|..++..
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 455777999889999999999998843 2 2468889999999999999998764
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.22 E-value=0.23 Score=40.96 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=63.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSP 83 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (481)
+|++++....+| ...+++.|.++| |+|++++.....+.. ....++.+..++.. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g--~~V~ii~~~~~~~~~-----------~~~~~i~~~~~~~~-----~----- 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRG--YDVHIITPRNDYEKY-----------EIIEGIKVIRLPSP-----R----- 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCC--CEEEEEEcCCCchhh-----------hHhCCeEEEEecCC-----C-----
Confidence 378888777776 457799999999 999999874332111 12347777777522 0
Q ss_pred CCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcc---hHHhhhhhcC-CceEEEe
Q 042987 84 ADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNP---AFQVSSSTLS-IPTYYYF 142 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~---~~~~A~~~lg-iP~v~~~ 142 (481)
..... ... .. .+..++++. +||+|.+....+. +..++ ...+ +|+|...
T Consensus 55 k~~~~----~~~-~~-~l~k~ik~~----~~DvIh~h~~~~~~~~~~l~~-~~~~~~~~i~~~ 106 (139)
T PF13477_consen 55 KSPLN----YIK-YF-RLRKIIKKE----KPDVIHCHTPSPYGLFAMLAK-KLLKNKKVIYTV 106 (139)
T ss_pred CccHH----HHH-HH-HHHHHhccC----CCCEEEEecCChHHHHHHHHH-HHcCCCCEEEEe
Confidence 11111 111 22 566777776 9999987765542 22344 7788 8888643
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=95.06 E-value=0.53 Score=45.46 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=59.0
Q ss_pred ccchh---hhhcccCcceeee---ccC-chhHHHhHhcCCcEEeccccc--chhH---HHHHHHHH-----------hce
Q 042987 349 WAPQV---EVLNHESVGGFVT---HCG-WNSVLEGVCAGVPMLAWPLYA--EQKM---IRAVVVEE-----------MKV 405 (481)
Q Consensus 349 ~~p~~---~ll~~~~~~~~I~---HgG-~gt~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~~-----------~G~ 405 (481)
++|+. .++..+++ +|. ..| ..++.||+++|+|+|+.-..+ |.-. |+-.+ +. .++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccc
Confidence 36644 36888888 663 233 458899999999999986543 2211 11111 00 123
Q ss_pred eeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042987 406 GLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 406 G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 473 (481)
|..++. +.+++.+++.+++.|.+.+.++++.+.-+.... +.-+-.+..+++.+.+.
T Consensus 274 G~~v~~--------~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFLDP--------DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 443332 467777888888876421124433333332222 24454455566665554
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.65 E-value=0.37 Score=36.52 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=38.1
Q ss_pred ccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 367 HCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 367 HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
+|-..-+.|++++|+|+|.-.. ......+ +. |.....- -+.+++.++|..+++|+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~--------~~~~el~~~i~~ll~~~~ 64 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY--------NDPEELAEKIEYLLENPE 64 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE--------CCHHHHHHHHHHHHCCHH
Confidence 4556688999999999999855 2222223 22 3222221 158999999999999886
No 139
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.79 E-value=7.1 Score=37.99 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-..+-||+.=..++.++|+++.|+.+|++++..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 49999999999999999999999999898999999865
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.65 E-value=7.2 Score=37.65 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-..+-||+.=..++.++|++.-|+.+|++++..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 58999999999999999999999999888999999854
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.57 E-value=0.9 Score=45.98 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=69.4
Q ss_pred cccchhh---hhcccCcceeee---ccCch-hHHHhHhcCCc----EEecccccchhHHHHHHHHHhceeeEeecCCccC
Q 042987 348 SWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVP----MLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD 416 (481)
Q Consensus 348 ~~~p~~~---ll~~~~~~~~I~---HgG~g-t~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
..+++.+ ++..+++ +|. +-|.| ++.||+++|+| +|+--+.+-.. .++-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~--------~l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ--------ELNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH--------HhCCcEEECC-----
Confidence 4555554 5777888 775 44755 67799999999 77766554322 2245777777
Q ss_pred cccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042987 417 RLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 417 ~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 473 (481)
.+.+.++++|.++|+.+. ++.+++.+++.+.+. ..+.....+.+++.+.
T Consensus 407 --~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 579999999999998552 235556666666654 3455577888887764
No 142
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.30 E-value=0.085 Score=44.31 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHHHHHHHhh
Q 042987 18 SMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALVYELGELN 97 (481)
Q Consensus 18 P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (481)
-+..|+++|.++| |+|+++++....... .....++.+..++.... . .....+ . .
T Consensus 6 ~~~~l~~~L~~~G--~~V~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~-------~~~~~~-~----~ 59 (160)
T PF13579_consen 6 YVRELARALAARG--HEVTVVTPQPDPEDD----------EEEEDGVRVHRLPLPRR--P-------WPLRLL-R----F 59 (160)
T ss_dssp HHHHHHHHHHHTT---EEEEEEE---GGG-----------SEEETTEEEEEE--S-S--S-------SGGGHC-C----H
T ss_pred HHHHHHHHHHHCC--CEEEEEecCCCCccc----------ccccCCceEEeccCCcc--c-------hhhhhH-H----H
Confidence 4678999999999 999999876443211 01234778777774321 0 011000 0 1
Q ss_pred hHHHHHHHHHhhccCCccEEEECCCCc-chHHhhhh-hcCCceEEEec
Q 042987 98 NPKLHETLITISKRSNLKAFVIDFFCN-PAFQVSSS-TLSIPTYYYFT 143 (481)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~-~~~~~A~~-~lgiP~v~~~~ 143 (481)
...+..++ .....+||+|.+..... ....++ + ..++|+|....
T Consensus 60 ~~~~~~~l--~~~~~~~Dvv~~~~~~~~~~~~~~-~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 LRRLRRLL--AARRERPDVVHAHSPTAGLVAALA-RRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHC--HHCT---SEEEEEHHHHHHHHHHH-HHHHT--EEEE-S
T ss_pred HHHHHHHH--hhhccCCeEEEecccchhHHHHHH-HHccCCcEEEEEC
Confidence 12333444 11234999999776332 233355 4 78999988653
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.18 E-value=8.1 Score=36.86 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=33.3
Q ss_pred chhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccccc
Q 042987 351 PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 351 p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~ 390 (481)
|+..+|..++. ++||=--.+.+.||+..|+|+.++|...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 57788999887 5667777888999999999999999976
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.64 E-value=2.1 Score=36.70 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=24.9
Q ss_pred cCCccEEEECCCCcchHHhhhhhc-CCceEEEecc
Q 042987 111 RSNLKAFVIDFFCNPAFQVSSSTL-SIPTYYYFTT 144 (481)
Q Consensus 111 ~~~pD~VI~D~~~~~~~~~A~~~l-giP~v~~~~~ 144 (481)
...||+||+..-...++.+- +.+ ++|.+.++=.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflk-dv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLK-DVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCCEEEEcCCcchhhhHH-HhCCCCcEEEEEEE
Confidence 35899999996555566677 888 9999997543
No 145
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=91.52 E-value=13 Score=35.66 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-..+-||+-=..++.+.|++.-|+.+|++++..
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 59999999999999999999999999888999999865
No 146
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.07 E-value=7.9 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=37.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
++|+++-...-||+.=.+++-..|+++.|+.++++++...
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~ 41 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKG 41 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccc
Confidence 5799999999999999999999999999999999998763
No 147
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.84 E-value=1.3 Score=44.89 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred eecccchhh---hhcccCcceeee---ccCch-hHHHhHhcCCc----EEecccccchhHHHHHHHHHhceeeEeecCCc
Q 042987 346 VESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVP----MLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 346 v~~~~p~~~---ll~~~~~~~~I~---HgG~g-t~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+.+++++.+ ++..+++ +|. +-|.| ++.||+++|+| +|+--+.+- . +...-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-~-------~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-A-------EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-h-------hhcCCCEEECC---
Confidence 335667654 6888888 664 44655 66899999999 444423221 1 11234666666
Q ss_pred cCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042987 415 KDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 472 (481)
.+.+++.++|.++++++. ++.+++.++.++.+. .-+....++.+++++
T Consensus 412 ----~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ----YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 569999999999998763 123333333333332 344446667776654
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=90.44 E-value=6.2 Score=43.21 Aligned_cols=83 Identities=6% Similarity=0.056 Sum_probs=53.8
Q ss_pred CCeEeecccchh---hhhcccCcceeeecc---C-chhHHHhHhcCCcEEeccccc--chhHH--HHHHHHHhceeeEee
Q 042987 342 RGLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYA--EQKMI--RAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~v~v~~~~p~~---~ll~~~~~~~~I~Hg---G-~gt~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~~~~G~G~~l~ 410 (481)
++|.+..+.+.. .++..+++ ||.-. | ..+.+||+++|+|.|+....+ |...+ ...+.+.-+-|...+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777654 47888888 88642 2 347899999999999876643 32211 111111225677766
Q ss_pred cCCccCcccCHHHHHHHHHHHhc
Q 042987 411 RSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
. .+++.+.++|.+++.
T Consensus 915 ~-------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T-------PDEQGLNSALERAFN 930 (977)
T ss_pred C-------CCHHHHHHHHHHHHH
Confidence 6 468888888888764
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.03 E-value=1.9 Score=37.12 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=58.1
Q ss_pred EcCCCccCHHHHHHHHHHH-HhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCc
Q 042987 8 YTSPGRGHLNSMVELGKLI-LTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADF 86 (481)
Q Consensus 8 ~~~p~~GHv~P~l~La~~L-~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~ 86 (481)
+-.++.||+.-|+.|.+.+ .++. +++..+++..+..... ..++.-+.. .....+..++.. ..-....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~-~~~~~ivt~~d~~S~~-k~~~~~~~~---~~~~~~~~~~r~-------r~v~q~~ 70 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRY-QPRTYIVTEGDKQSRS-KAEQLEKSS---SKRHKILEIPRA-------REVGQSY 70 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcC-CCcEEEEEcCCcccHH-HHHHHHHhc---cccceeeccceE-------EEechhh
Confidence 4458899999999999999 3332 2555555544332211 111111111 001123333311 0000111
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCCcc--hHHhhhhhc------CCceEEEec
Q 042987 87 PALVYELGELNNPKLHETLITISKRSNLKAFVIDFFCNP--AFQVSSSTL------SIPTYYYFT 143 (481)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~~A~~~l------giP~v~~~~ 143 (481)
.......+......+.-+.++ +||+||+..-..+ ...+| ..+ |.+.|-+-+
T Consensus 71 ~~~~~~~l~~~~~~~~il~r~-----rPdvii~nGpg~~vp~~~~~-~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 71 LTSIFTTLRAFLQSLRILRRE-----RPDVIISNGPGTCVPVCLAA-KLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HhhHHHHHHHHHHHHHHHHHh-----CCCEEEEcCCceeeHHHHHH-HHHHHhhccCCcEEEEEe
Confidence 122223333333333333322 8999998875544 33355 888 899888754
No 150
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=89.27 E-value=2 Score=46.72 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred hhhcccCcceeeec---cCch-hHHHhHhcCCc---EEecc-cccchhHHHHHHHHHhc-eeeEeecCCccCcccCHHHH
Q 042987 354 EVLNHESVGGFVTH---CGWN-SVLEGVCAGVP---MLAWP-LYAEQKMIRAVVVEEMK-VGLAVTRSEEKDRLVSAAEL 424 (481)
Q Consensus 354 ~ll~~~~~~~~I~H---gG~g-t~~eal~~GvP---~l~~P-~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~l 424 (481)
.++..+++ +|.- -|.| +..|++++|+| +++++ +.+- + +.+| -|+.+++ .+.+.+
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~----~----~~l~~~allVnP-------~D~~~l 433 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA----G----QSLGAGALLVNP-------WNITEV 433 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcCc----h----hhhcCCeEEECC-------CCHHHH
Confidence 57778888 7754 4877 55699999999 44444 3331 1 1234 5788887 679999
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 042987 425 EQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRGC 476 (481)
Q Consensus 425 ~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 476 (481)
+++|.++|+.+. ++.+++.+++.+.++ ..+.....+.+++.+.+..
T Consensus 434 A~AI~~aL~m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 434 SSAIKEALNMSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 999999998331 124455555555554 2344467777777776554
No 151
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.12 E-value=4.2 Score=41.85 Aligned_cols=92 Identities=15% Similarity=0.278 Sum_probs=63.1
Q ss_pred CCeEeecccc--h-hhhhcccCcceeeecc---CchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 342 RGLVVESWAP--Q-VEVLNHESVGGFVTHC---GWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 342 ~~v~v~~~~p--~-~~ll~~~~~~~~I~Hg---G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
..|.+.++.. + ..++.++.+ +|.=+ |.+|.+||+.+|+|+| .+.....| +.-.=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~-- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---D-- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---C--
Confidence 3566767776 3 347777777 88765 7779999999999999 22223334 342445444 2
Q ss_pred CcccCHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHH
Q 042987 416 DRLVSAAELEQRVSELMDSEK-GRAVKERAVAMKEAAA 452 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~ 452 (481)
+..+|.++|..+|.+.+ .+.+...+-+.+++..
T Consensus 474 ----d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ----DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ----CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 58899999999999885 5666666666555443
No 152
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=87.99 E-value=7.2 Score=32.90 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=25.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 11 p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
...|=-.-...|+++|+++| |+|+++++....
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~ 41 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRG--HEVTVVSPGVKD 41 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT---EEEEEESS-TT
T ss_pred CCChHHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 45666778899999999999 999999876443
No 153
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.38 E-value=2.6 Score=43.35 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=50.0
Q ss_pred chhhhhcccCcceeee---ccCch-hHHHhHhcCCcEEeccccc-chhHHHHHHHHHh-ceeeEeecCCccCcccCHHHH
Q 042987 351 PQVEVLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYA-EQKMIRAVVVEEM-KVGLAVTRSEEKDRLVSAAEL 424 (481)
Q Consensus 351 p~~~ll~~~~~~~~I~---HgG~g-t~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~-G~G~~l~~~~~~~~~~~~~~l 424 (481)
+..+++..|++ +|. +=|+| +++||+++|+|+|.....+ ..... ..+ ..- ..|+.+...+..+-.-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v-~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHI-EDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHh-ccCCCceEEEecCCccchHHHHHHH
Confidence 36677888888 665 44544 8899999999999987743 22222 122 120 257777643211111356778
Q ss_pred HHHHHHHhcCc
Q 042987 425 EQRVSELMDSE 435 (481)
Q Consensus 425 ~~~i~~~l~~~ 435 (481)
.+++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888543
No 154
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.88 E-value=24 Score=35.52 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCcEEEEecCCCcCCCHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEee-cccc-h
Q 042987 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVE-SWAP-Q 352 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~-~~~p-~ 352 (481)
++.++++| ..+.++.+....++. +..|=...+.. ....+.......|+++. ++.+ .
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------------~s~kL~~L~~y~nvvly~~~~~~~ 340 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------------MSSKLMSLDKYDNVKLYPNITTQK 340 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------------ccHHHHHHHhcCCcEEECCcChHH
Confidence 33477776 255566666666664 45543332221 11222221122466554 5566 3
Q ss_pred -hhhhcccCcceeeeccC--chhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHH
Q 042987 353 -VEVLNHESVGGFVTHCG--WNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 353 -~~ll~~~~~~~~I~HgG--~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~ 429 (481)
.+++..|++=+-|+||. ..++.||+.+|+|++..=...... ..+ .. |-.... -+.+++.++|.
T Consensus 341 l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~~~-------~~~~~m~~~i~ 406 (438)
T TIGR02919 341 IQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIFEH-------NEVDQLISKLK 406 (438)
T ss_pred HHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---CceecC-------CCHHHHHHHHH
Confidence 46999999988888876 568999999999999875432211 222 11 444444 25899999999
Q ss_pred HHhcCchhHHHHHHHHHHHH
Q 042987 430 ELMDSEKGRAVKERAVAMKE 449 (481)
Q Consensus 430 ~~l~~~~~~~~~~~a~~l~~ 449 (481)
++|++++ .++++..+-++
T Consensus 407 ~lL~d~~--~~~~~~~~q~~ 424 (438)
T TIGR02919 407 DLLNDPN--QFRELLEQQRE 424 (438)
T ss_pred HHhcCHH--HHHHHHHHHHH
Confidence 9999885 24544444333
No 155
>PRK14099 glycogen synthase; Provisional
Probab=85.85 E-value=16 Score=37.36 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=29.3
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~------p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+||++++. -+.|=..-.-+|.++|+++| |+|.++.|..
T Consensus 4 ~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g--~~v~v~~P~y 47 (485)
T PRK14099 4 LRVLSVASEIFPLIKTGGLADVAGALPAALKAHG--VEVRTLVPGY 47 (485)
T ss_pred cEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 47998876 23444455678999999999 9999998853
No 156
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.82 E-value=10 Score=35.65 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=58.5
Q ss_pred CCeE-eecccc---hhhhhcccCcceeeec--cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 342 RGLV-VESWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 342 ~~v~-v~~~~p---~~~ll~~~~~~~~I~H--gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
+++. +.+++| +..+|+.|+++.|+|+ =|.||+.-.++.|+|.++- .+=+.|.... +. |+=+..+...
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e~-gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-EQ-GLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-hC-CCeEEecCCc--
Confidence 3443 446776 5679999999888886 5899999999999999987 3444555544 45 8877666666
Q ss_pred CcccCHHHHHHHHHHHh
Q 042987 416 DRLVSAAELEQRVSELM 432 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l 432 (481)
++...+.++=+++.
T Consensus 279 ---L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 ---LDEDIVREAQRQLA 292 (322)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 88877777644443
No 157
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.26 E-value=33 Score=32.92 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCeE-eecccc---hhhhhcccCcceeeec--cCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCcc
Q 042987 342 RGLV-VESWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEK 415 (481)
Q Consensus 342 ~~v~-v~~~~p---~~~ll~~~~~~~~I~H--gG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
+++. +.+++| +..+|..|+++.|.|. =|.|++.-.|+.|+|+++- .+=+.+-... +. |+-+....++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~~-~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-EQ-GIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-hC-CCeEEecccc--
Confidence 4554 457887 4569999999777775 5999999999999999986 4555555544 45 8877777677
Q ss_pred CcccCHHHHHHHHHHHhc
Q 042987 416 DRLVSAAELEQRVSELMD 433 (481)
Q Consensus 416 ~~~~~~~~l~~~i~~~l~ 433 (481)
++...|.++=+++..
T Consensus 318 ---L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 ---LDEALVREAQRQLAN 332 (360)
T ss_pred ---CCHHHHHHHHHHHhh
Confidence 999999998887764
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.63 E-value=5.1 Score=37.29 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=56.0
Q ss_pred eecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhH--HHHHHHHHhceeeEeecCCccCcccCHHH
Q 042987 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKM--IRAVVVEEMKVGLAVTRSEEKDRLVSAAE 423 (481)
Q Consensus 346 v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (481)
+..|-...++|.++++ .|--.|. .+-+++-.|+|+|.+|-.+-|+. .|.|=.+-+|+.+.+-... +..
T Consensus 299 ~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-------aq~ 368 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-------AQA 368 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-------hhh
Confidence 3355555667777766 5544432 23356788999999999998875 4566556778887776533 333
Q ss_pred HHHHHHHHhcCchhHHHHHHHH
Q 042987 424 LEQRVSELMDSEKGRAVKERAV 445 (481)
Q Consensus 424 l~~~i~~~l~~~~~~~~~~~a~ 445 (481)
-..+..+++.|+. +..+++
T Consensus 369 a~~~~q~ll~dp~---r~~air 387 (412)
T COG4370 369 AAQAVQELLGDPQ---RLTAIR 387 (412)
T ss_pred HHHHHHHHhcChH---HHHHHH
Confidence 3444455899987 555554
No 159
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.50 E-value=20 Score=31.81 Aligned_cols=146 Identities=11% Similarity=0.099 Sum_probs=77.0
Q ss_pred CcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
+.++.|+.|.+. ...++.|.+.+..+.++ ... ..+.+.+......+...........+
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------------~~~~l~~l~~~~~i~~~~~~~~~~~l 68 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------------LTENLVKLVEEGKIRWKQKEFEPSDI 68 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------------CCHHHHHHHhCCCEEEEecCCChhhc
Confidence 348888877765 34555566667665544 321 11222222222233333333334456
Q ss_pred cccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHH-----HHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMI-----RAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
..+++ +|.--+.-.+.+.++ .++++-+ .|.+.. -..+ ++-++-+.+..+. ..|.+ +..|++.
T Consensus 69 ~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G-~sP~l-a~~lr~~ 139 (202)
T PRK06718 69 VDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDG-ASPKL-AKKIRDE 139 (202)
T ss_pred CCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCC-CChHH-HHHHHHH
Confidence 77777 888777766666554 4555443 343322 2233 2213334443332 12222 3568888
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHH
Q 042987 428 VSELMDSEKGRAVKERAVAMKEAAAAA 454 (481)
Q Consensus 428 i~~~l~~~~~~~~~~~a~~l~~~~~~~ 454 (481)
|++++ .++...+-+.+.++++.+++.
T Consensus 140 ie~~~-~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 140 LEALY-DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHc-chhHHHHHHHHHHHHHHHHHh
Confidence 88877 334556778888888888764
No 160
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.24 E-value=5.3 Score=34.91 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=46.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHH
Q 042987 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALV 90 (481)
Q Consensus 11 p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 90 (481)
.+-|-++-...|+++|.++.|+++|.+.+.+... ....... ..+.+...-+|.+ .
T Consensus 29 ~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg------~~~~~~~--~~~~v~~~~~P~D-------------~---- 83 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTG------REMARKL--LPDRVDVQYLPLD-------------F---- 83 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCH------HHHHHGG---GGG-SEEE---S-------------S----
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCch------HHHHHHh--CCCCeEEEEeCcc-------------C----
Confidence 5679999999999999999777999888764331 1111111 0112222223321 1
Q ss_pred HHHHHhhhHHHHHHHHHhhccCCccEEE-ECCCCcchHHhhhhhcCCceEEEec
Q 042987 91 YELGELNNPKLHETLITISKRSNLKAFV-IDFFCNPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~pD~VI-~D~~~~~~~~~A~~~lgiP~v~~~~ 143 (481)
....+..++.+ +||++| ++.-.++....+|++.|||.+.+..
T Consensus 84 -------~~~~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -------PWAVRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------HHHHHHHHHHH------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------HHHHHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12455777888 999988 4443444555443889999999743
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.02 E-value=6.7 Score=33.11 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP 72 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (481)
|.++|++.-.|+-|-..-.+.|+..|.+.| +.|-=+.+...++ .- ..-|++...+...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~-------gG-----kR~GF~Ivdl~tg 61 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVRE-------GG-----KRIGFKIVDLATG 61 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeec-------CC-----eEeeeEEEEccCC
Confidence 456899999999999999999999999999 8876444332221 11 1227777777754
No 162
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=80.92 E-value=65 Score=32.93 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=74.2
Q ss_pred Eeecccchhh---hhcccCcceeee--ccCchhHH-HhHhcCC----cEEecccccchhHHHHHHHHHhceeeEeecCCc
Q 042987 345 VVESWAPQVE---VLNHESVGGFVT--HCGWNSVL-EGVCAGV----PMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 345 ~v~~~~p~~~---ll~~~~~~~~I~--HgG~gt~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
.+.+.+|+.+ ++.-+++ ++|| .-|+|.+. |.++++. |+|+--+.+ |+ +.+.-++.+++
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP--- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP--- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC---
Confidence 4556777665 5666777 3333 45888665 9999987 555544332 11 34556788888
Q ss_pred cCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 042987 415 KDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRGC 476 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 476 (481)
++.+.++++|.++|+.+. ++-+++.+++.+.++ ........+.+++.+....
T Consensus 433 ----~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQA 484 (487)
T ss_pred ----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhcc
Confidence 779999999999998763 335666666666665 3344478888988887654
No 163
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=79.60 E-value=14 Score=33.93 Aligned_cols=116 Identities=8% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTL 80 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (481)
|++||| ++.--.=|.-=+.+|+++|++.| +|+++.|. .-+............+.+..+.....
T Consensus 4 ~~M~IL-ltNDDGi~a~Gi~aL~~~l~~~g---~V~VvAP~-------~~~Sg~g~ait~~~pl~~~~~~~~~~------ 66 (257)
T PRK13932 4 KKPHIL-VCNDDGIEGEGIHVLAASMKKIG---RVTVVAPA-------EPHSGMSHAMTLGVPLRIKEYQKNNR------ 66 (257)
T ss_pred CCCEEE-EECCCCCCCHHHHHHHHHHHhCC---CEEEEcCC-------CCCCCCcccccCCCCeEEEEEccCCC------
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEE----------ECCCCcchHHhhhhh---cCCceEEEe
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFV----------IDFFCNPAFQVSSST---LSIPTYYYF 142 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI----------~D~~~~~~~~~A~~~---lgiP~v~~~ 142 (481)
.....--.--.....-.+..++.+ +||+|| .|.++++++.+| .+ +|||.|.++
T Consensus 67 ---~~~y~v~GTPaDCV~lal~~~~~~-----~pDLVvSGIN~G~N~G~dv~ySGTVgAA-~Ea~~~GiPsIA~S 132 (257)
T PRK13932 67 ---FFGYTVSGTPVDCIKVALSHILPE-----KPDLIVSGINYGSNTATNTLYSGTVAAA-LEGAIQGIPSLAFS 132 (257)
T ss_pred ---ceEEEEcCcHHHHHHHHHHhhcCC-----CCCEEEECCcCCCCCCcCEecchhHHHH-HHHHHcCCCeEEEE
No 164
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=79.57 E-value=2 Score=36.95 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhhccCCccEEEECCCCcchH-H--h-hhhhc-CCceEEEec
Q 042987 96 LNNPKLHETLITISKRSNLKAFVIDFFCNPAF-Q--V-SSSTL-SIPTYYYFT 143 (481)
Q Consensus 96 ~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~-~--~-A~~~l-giP~v~~~~ 143 (481)
...+.+.+++++. +||+||+...+...+ . + ....+ ++|.+.+.|
T Consensus 76 ~~~~~l~~~l~~~----~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLREF----QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhhc----CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3455677777776 999999997664444 2 1 20224 578777655
No 165
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=78.90 E-value=17 Score=33.22 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 15 HLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 15 Hv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
|.-=+.+|+++|+ .+ ++|+++.|....
T Consensus 12 ~a~Gi~aL~~al~-~~--~dV~VVAP~~~q 38 (252)
T COG0496 12 HAPGIRALARALR-EG--ADVTVVAPDREQ 38 (252)
T ss_pred CCHHHHHHHHHHh-hC--CCEEEEccCCCC
Confidence 4445667888888 88 899999876543
No 166
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.79 E-value=38 Score=28.36 Aligned_cols=138 Identities=22% Similarity=0.296 Sum_probs=69.8
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcc
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNH 358 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~ 358 (481)
.|.|-+||.. +....+++...|++.+..+-..+-+. +-.|+.+. .++...+- ..
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------------HR~p~~l~-----------~~~~~~~~-~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------------HRTPERLL-----------EFVKEYEA-RG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------------TTSHHHHH-----------HHHHHTTT-TT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------------cCCHHHHH-----------HHHHHhcc-CC
Confidence 4555567765 67778889999999987765554332 11333322 22211111 22
Q ss_pred cCcceeeeccCchhHHHhHh---cCCcEEecccccchhH----HHHHHHHHhceeeEeec--CCccCcccCHHHHHHHHH
Q 042987 359 ESVGGFVTHCGWNSVLEGVC---AGVPMLAWPLYAEQKM----IRAVVVEEMKVGLAVTR--SEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 359 ~~~~~~I~HgG~gt~~eal~---~GvP~l~~P~~~DQ~~----na~~v~~~~G~G~~l~~--~~~~~~~~~~~~l~~~i~ 429 (481)
+++ ||.=.|...-+-++. .-.|+|.+|....+.. ....+.---|+++..-. +. .++..+.-.|.
T Consensus 56 ~~v--iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~-----~nAA~~A~~IL 128 (150)
T PF00731_consen 56 ADV--IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNG-----FNAALLAARIL 128 (150)
T ss_dssp ESE--EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHH-----HHHHHHHHHHH
T ss_pred CEE--EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCc-----hHHHHHHHHHH
Confidence 344 888777654333322 3689999999766432 22333212255543322 22 44555554444
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHH
Q 042987 430 ELMDSEKGRAVKERAVAMKEAAAA 453 (481)
Q Consensus 430 ~~l~~~~~~~~~~~a~~l~~~~~~ 453 (481)
.+ .|++ ++++.+.+++++++
T Consensus 129 a~-~d~~---l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 129 AL-KDPE---LREKLRAYREKMKE 148 (150)
T ss_dssp HT-T-HH---HHHHHHHHHHHHHH
T ss_pred hc-CCHH---HHHHHHHHHHHHHc
Confidence 33 4666 88888888888764
No 167
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=76.95 E-value=23 Score=33.86 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCC
Q 042987 3 DTIVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSS 47 (481)
Q Consensus 3 ~~il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~ 47 (481)
.||+|++. |+-|=..=--++|-.|++.| .+|.++++.+.++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchH
Confidence 47888887 78888888889999999999 998888777666543
No 168
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=76.90 E-value=6.1 Score=32.57 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=36.6
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 1 MK-DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 1 m~-~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|+ ++|++.+.++.+|-.-..-++..|+++| .+|+++....+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G--~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAG--FEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 54 4899999999999999999999999999 99999965544
No 169
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=75.13 E-value=4.7 Score=39.56 Aligned_cols=116 Identities=11% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCeEee-cccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccC
Q 042987 342 RGLVVE-SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVS 420 (481)
Q Consensus 342 ~~v~v~-~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (481)
.++... +..+..++|..+++ +||-- .+.+.|.+..++|+|....-.|.+.. .-|.-.......-..-.-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhhCCCceeCC
Confidence 355443 44567889999999 99987 45788999999999988776666522 1133322211110011256
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042987 421 AAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 421 ~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 469 (481)
.++|.++|+.+++++. .++++-+++.+++-. ..+|.++.+.++.++
T Consensus 323 ~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPD--EYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 7899999999887654 255666666666653 234555544555443
No 170
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=73.51 E-value=6.2 Score=37.59 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=31.9
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Q 042987 5 IVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 5 il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
++|+.. |+-|=..--.++|..++++| ++|.+++....++
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHS 42 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCcc
Confidence 666665 78999999999999999999 9999998776543
No 171
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=73.15 E-value=21 Score=38.64 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred eecccchhh---hhcccCcceeeec---cCch-hHHHhHhcCCc---EEecc-cccchhHHHHHHHHHhceeeEeecCCc
Q 042987 346 VESWAPQVE---VLNHESVGGFVTH---CGWN-SVLEGVCAGVP---MLAWP-LYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 346 v~~~~p~~~---ll~~~~~~~~I~H---gG~g-t~~eal~~GvP---~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+.+++++.+ ++..+++ ++.- -|.| ++.|++++|+| .+++. +.+. + +.+.-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~----~----~~l~~~llv~P--- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA----A----AELAEALLVNP--- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccch----h----HHhCcCeEECC---
Confidence 445677654 6777887 6654 3544 67799999775 22222 2221 1 12233777777
Q ss_pred cCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 042987 415 KDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
.+.+.+.++|.++|+.+. ++.+++.++..+.++ .-+....++.+++.+.+.
T Consensus 413 ----~d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 ----NDIEGIAAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred ----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 569999999999998652 124444444444443 244446777777776654
No 172
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=73.01 E-value=55 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.4
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
.+++++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34488888866 56799999999999963
No 173
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=72.62 E-value=44 Score=29.68 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=76.1
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhc
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~ 357 (481)
.++.|+.|.+. ..-+..|.+.|..+.++-.. ..+.+.+-....++....--.+...|.
T Consensus 11 ~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~---------------~~~~l~~l~~~~~i~~~~~~~~~~dl~ 68 (205)
T TIGR01470 11 AVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE---------------LESELTLLAEQGGITWLARCFDADILE 68 (205)
T ss_pred eEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC---------------CCHHHHHHHHcCCEEEEeCCCCHHHhC
Confidence 48888877764 33445566677776554322 112222222222333321111234466
Q ss_pred ccCcceeeeccCchhHH-----HhHhcCCcEEec--ccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 358 HESVGGFVTHCGWNSVL-----EGVCAGVPMLAW--PLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~-----eal~~GvP~l~~--P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
.+++ +|..-|...+. +|-..|+|+-++ |-..| +..-..+ +.=++-+.+..+. ..|.+ +..|++.|++
T Consensus 69 ~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G-~sP~l-a~~lr~~ie~ 142 (205)
T TIGR01470 69 GAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGG-AAPVL-ARLLRERIET 142 (205)
T ss_pred CcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCC-CCcHH-HHHHHHHHHH
Confidence 6776 88887876444 344578888444 22233 2222333 2313334443332 12223 3568888888
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHH
Q 042987 431 LMDSEKGRAVKERAVAMKEAAAAA 454 (481)
Q Consensus 431 ~l~~~~~~~~~~~a~~l~~~~~~~ 454 (481)
++.. +...+-+.+.++++.+++.
T Consensus 143 ~l~~-~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 143 LLPP-SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred hcch-hHHHHHHHHHHHHHHHHhh
Confidence 8843 2345777777777777754
No 174
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=72.28 E-value=6.5 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
||++.+.++..|.....-++..|++.| ++|..+..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G--~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAG--FEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCC--CEEEECCC
Confidence 489999999999999999999999999 99988753
No 175
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.85 E-value=22 Score=33.04 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.1
Q ss_pred eEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEeccc
Q 042987 344 LVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 344 v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~ 388 (481)
+.+.+-++-.+++.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 344466788899999999 8887653 77899999999999865
No 176
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.41 E-value=18 Score=32.92 Aligned_cols=99 Identities=9% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCcEEEEecCCCc---CCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeeccc--
Q 042987 276 SRSVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWA-- 350 (481)
Q Consensus 276 ~~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~-- 350 (481)
+++.|.|..|+.. .++.+.+.++++.|.+.+..+++ ++.+. +.....-..+.+......+.+.+-.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl-~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVL-LGGPE--------EQEKEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSH--------HHHHHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEE-Eccch--------HHHHHHHHHHHHhcccceEeecCCCCH
Confidence 3447777777765 66788899999999888766544 44320 0000011111111111123333322
Q ss_pred ch-hhhhcccCcceeeeccCchhHHHhHhcCCcEEec
Q 042987 351 PQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 351 p~-~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~ 386 (481)
.+ ..++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 23 458899998 88875 57888899999999998
No 177
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=70.05 E-value=5.3 Score=36.04 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=25.4
Q ss_pred CccEEE-ECCCCc-chHHhhhhhcCCceEEEeccchhh
Q 042987 113 NLKAFV-IDFFCN-PAFQVSSSTLSIPTYYYFTTAGSV 148 (481)
Q Consensus 113 ~pD~VI-~D~~~~-~~~~~A~~~lgiP~v~~~~~~~~~ 148 (481)
-||+++ .|+..- -++.-| .++|||+|.++-+.+-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA-~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEA-NKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHH-HHcCCCEEEEecCCCCC
Confidence 499877 665443 355577 99999999998766543
No 178
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=69.35 E-value=38 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44477777755 55689999999999964
No 179
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.73 E-value=1e+02 Score=28.72 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=52.6
Q ss_pred CCeEeecccc---hhhhhcccCcceeeec---cCchh-HHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCc
Q 042987 342 RGLVVESWAP---QVEVLNHESVGGFVTH---CGWNS-VLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~v~v~~~~p---~~~ll~~~~~~~~I~H---gG~gt-~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
.++...++++ ...++..+++ +++- .|.|. +.||+++|+|+|..... .....+ ..-+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecCC--
Confidence 5677778888 2336776777 7766 35544 59999999999776543 222333 2312366 3331
Q ss_pred cCcccCHHHHHHHHHHHhcCch
Q 042987 415 KDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
...+.+.+++..++++.+
T Consensus 327 ----~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 327 ----GDVEELADALEQLLEDPE 344 (381)
T ss_pred ----CCHHHHHHHHHHHhcCHH
Confidence 257899999999998764
No 180
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.72 E-value=39 Score=31.02 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|.++|+++..=+.| ..||+.|.++| +.|+..+.+.
T Consensus 1 ~~~~IlvlgGT~eg-----r~la~~L~~~g--~~v~~Svat~ 35 (248)
T PRK08057 1 MMPRILLLGGTSEA-----RALARALAAAG--VDIVLSLAGR 35 (248)
T ss_pred CCceEEEEechHHH-----HHHHHHHHhCC--CeEEEEEccC
Confidence 55688888765555 47899999999 9888876553
No 181
>PRK07206 hypothetical protein; Provisional
Probab=67.30 E-value=18 Score=36.16 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|+++++++-....| ..++++++++| +++..++..
T Consensus 1 ~~k~~liv~~~~~~-----~~~~~a~~~~G--~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSSG-----KFLAPAFKKRG--IEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCchH-----HHHHHHHHHcC--CeEEEEEcC
Confidence 77789998865443 46899999999 998888644
No 182
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=66.42 E-value=46 Score=33.77 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=38.2
Q ss_pred hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCch
Q 042987 372 SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 372 t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~ 436 (481)
++.||+++|.|+|..=-. --+..+ +..--|..+++.+ -....+.+++.++..|++
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV-~~~~tG~l~dp~~-----e~~~~~a~~~~kl~~~p~ 435 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIV-VHGVTGLLIDPGQ-----EAVAELADALLKLRRDPE 435 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEE-EcCCcceeeCCch-----HHHHHHHHHHHHHhcCHH
Confidence 789999999999998322 222333 3324566666543 345589999999999998
No 183
>PLN02470 acetolactate synthase
Probab=65.78 E-value=64 Score=33.96 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=51.0
Q ss_pred ecCCCcCCCH--HHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeec--------ccc
Q 042987 283 CFGSLGSFSS--KQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRT-KDRGLVVES--------WAP 351 (481)
Q Consensus 283 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~v~~--------~~p 351 (481)
+|||....+. .....+++.|++.|++.|+.+.+... ..+.+.+ ..+++.... ++=
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------------~~l~dal~~~~~i~~i~~rhE~~A~~~A 67 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------------MEIHQALTRSNCIRNVLCRHEQGEVFAA 67 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------------HHHHHHHhccCCceEEEeccHHHHHHHH
Confidence 4677663332 22566888888888888888766410 1111111 111222211 111
Q ss_pred hhhhhcccCcceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 352 QVEVLNHESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 352 ~~~ll~~~~~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
...-.-+...+++++|.|-| .+.+|...++|+|++.
T Consensus 68 dgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 68 EGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 11111122455588998866 6779999999999995
No 184
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=64.85 E-value=27 Score=32.22 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+++..-|+.|-..-..+||..+++.| ++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g--~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQG--KKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCC--CCceEEeCCC
Confidence 34444589999999999999999999 9999997654
No 185
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.54 E-value=28 Score=34.50 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVS 46 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~ 46 (481)
-|+++-.-+.|-+.-.-.||+.|+++| +.|.+++...++..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpA 142 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPA 142 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCChH
Confidence 477777789999999999999999999 99999998877664
No 186
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=61.66 E-value=48 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=25.9
Q ss_pred hhhhhcccCcceeeeccCchhHH---HhHhcCCcEEeccc
Q 042987 352 QVEVLNHESVGGFVTHCGWNSVL---EGVCAGVPMLAWPL 388 (481)
Q Consensus 352 ~~~ll~~~~~~~~I~HgG~gt~~---eal~~GvP~l~~P~ 388 (481)
-..++-..+-..++--||.||.. |++.+++|+++++.
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44444443334677789999876 56889999999985
No 187
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.56 E-value=66 Score=29.73 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||+++. +.|. -..|+++|.++| |+|+..+.+..
T Consensus 2 ~ILvlG--GT~e---gr~la~~L~~~g--~~v~~s~~t~~ 34 (256)
T TIGR00715 2 TVLLMG--GTVD---SRAIAKGLIAQG--IEILVTVTTSE 34 (256)
T ss_pred eEEEEe--chHH---HHHHHHHHHhCC--CeEEEEEccCC
Confidence 366553 3343 678999999999 99998876544
No 188
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.06 E-value=1.5e+02 Score=27.71 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=30.6
Q ss_pred CeEeecccchh---hhhcccCcceeeeccCchhHHHhHhcCCcEEe
Q 042987 343 GLVVESWAPQV---EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 343 ~v~v~~~~p~~---~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~ 385 (481)
.+++.+|+||+ .+|--|++ -+-. |--|+..|..+|+|.+=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW 281 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE
Confidence 35566899975 48888888 3333 67799999999999874
No 189
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=59.04 E-value=83 Score=26.49 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 042987 419 VSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAA 454 (481)
Q Consensus 419 ~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 454 (481)
.++..+...|.. +.|++ ++++.+.+++++++.
T Consensus 116 ~nAa~~AaqIl~-~~d~~---l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 116 GNAALLAAQILG-IKDPE---LAEKLKEYRENQKEE 147 (156)
T ss_pred hHHHHHHHHHHc-CCCHH---HHHHHHHHHHHHHHH
Confidence 455544444432 24555 788887777777644
No 190
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=58.84 E-value=41 Score=30.96 Aligned_cols=99 Identities=5% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHHHHHHHhhh
Q 042987 19 MVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALVYELGELNN 98 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (481)
+.+|+++|++ + |+|+++.|. .-+.....-......+....+..... .....--.--.....
T Consensus 16 i~aL~~~l~~-~--~~V~VvAP~-------~~qSg~g~ait~~~pl~~~~~~~~~~---------~~~y~v~GTPaDcV~ 76 (253)
T PRK13935 16 IIILAEYLSE-K--HEVFVVAPD-------KERSATGHAITIRVPLWAKKVFISER---------FVAYATTGTPADCVK 76 (253)
T ss_pred HHHHHHHHHh-C--CcEEEEccC-------CCCccccccccCCCCceEEEeecCCC---------ccEEEECCcHHHHHH
Q ss_pred HHHHHHHHHhhccCCccEEE----------ECCCCcchHHhhhhh---cCCceEEEe
Q 042987 99 PKLHETLITISKRSNLKAFV----------IDFFCNPAFQVSSST---LSIPTYYYF 142 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI----------~D~~~~~~~~~A~~~---lgiP~v~~~ 142 (481)
-.+..++.+ +||+|| .|.++++.+.+| .+ +|||.|.++
T Consensus 77 lal~~~~~~-----~pDLVvSGIN~G~N~g~~v~ySGTVgAA-~ea~~~GiPaiA~S 127 (253)
T PRK13935 77 LGYDVIMDK-----KVDLVISGINRGPNLGTDVLYSGTVSGA-LEGAMMGVPSIAIS 127 (253)
T ss_pred HHHHhhccC-----CCCEEEeCCccCCCCCcCCcccHhHHHH-HHHHhcCCCeEEEE
No 191
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.16 E-value=22 Score=33.06 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=36.4
Q ss_pred ccCcceeeeccCchhHHHhHh------cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 358 HESVGGFVTHCGWNSVLEGVC------AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
.+++ +|+-||=||++.+++ .++|++.+-.. .+|.. .+ ++++++.+.++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL---~~-----~~~~~~~~~l~~i 90 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY---TD-----WRPFEVDKLVIAL 90 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec---cc-----CCHHHHHHHHHHH
Confidence 3455 999999999999976 48899988431 11111 12 4567777777777
Q ss_pred hcCc
Q 042987 432 MDSE 435 (481)
Q Consensus 432 l~~~ 435 (481)
++++
T Consensus 91 ~~g~ 94 (265)
T PRK04885 91 AKDP 94 (265)
T ss_pred HcCC
Confidence 7654
No 192
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.09 E-value=23 Score=28.00 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|+++.+.+...|-.-+..|+..|+++| |+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G--~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAG--HEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTT--BEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCC--CeEEEECC
Confidence 689999999999999999999999999 99999843
No 193
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=57.90 E-value=60 Score=30.57 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
++|.+.-.|+.|--.=.-.|.+.|.++| |+|.++...+..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVDPSS 91 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERG--HRVAVLAVDPSS 91 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCC--cEEEEEEECCCC
Confidence 3678888899999999999999999999 999999865443
No 194
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=56.25 E-value=20 Score=29.06 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=29.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|||++...|+.+=.. ...+.++|+++| ++|.++.+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g--~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAG--WEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTT--SEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCC--CEEEEEECC
Confidence 468888888877666 999999999999 999998765
No 195
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.08 E-value=1.7e+02 Score=27.09 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred cccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEec
Q 042987 348 SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 348 ~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~ 386 (481)
++=|+-++|..++. .++|---.|.+.||.+.|+|+-+.
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45689999999987 345566678889999999998664
No 196
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=56.07 E-value=26 Score=25.59 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
+-++++..+...|...+-.+|+.|.+.| ..|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G--~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQG--YAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCC--CEEEEE
Confidence 4688999999999999999999999999 887765
No 197
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=55.75 E-value=46 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+|+++-.+++-| +||..|.+. |..+-.|+++.
T Consensus 2 kVLviGsGgREH-----Aia~~l~~s-~~v~~v~~aPG 33 (100)
T PF02844_consen 2 KVLVIGSGGREH-----AIAWKLSQS-PSVEEVYVAPG 33 (100)
T ss_dssp EEEEEESSHHHH-----HHHHHHTTC-TTEEEEEEEE-
T ss_pred EEEEECCCHHHH-----HHHHHHhcC-CCCCEEEEeCC
Confidence 599999999988 589999877 33555555555
No 198
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=55.48 E-value=54 Score=30.21 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 19 MVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
+.+|+++|++ + |+|+++.|....
T Consensus 16 l~aL~~~l~~-~--~~V~VvAP~~~~ 38 (253)
T PRK13933 16 INTLAELLSK-Y--HEVIIVAPENQR 38 (253)
T ss_pred HHHHHHHHHh-C--CcEEEEccCCCC
Confidence 7788888864 7 799999776543
No 199
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=54.94 E-value=1.2e+02 Score=25.11 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=20.8
Q ss_pred eeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 363 GFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 363 ~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
+++.|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 488887754 56789999999999964
No 200
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=54.31 E-value=37 Score=34.04 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=24.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|+.++..+.. .+.+++.|.+-| -+|..+.+..
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elG--mevv~~~t~~ 318 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESG--ADVPYVGTAI 318 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCC--CEEEEEecCC
Confidence 5666666655 888999999999 9998886553
No 201
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.24 E-value=18 Score=31.20 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=20.9
Q ss_pred cCcceeeeccCchhHHHhHhcCCcEEeccccc
Q 042987 359 ESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 359 ~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~ 390 (481)
..+.++|++||...+..... ++|+|-+|..+
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 33444999999999998877 99999999853
No 202
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=53.68 E-value=26 Score=29.57 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=28.1
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEE
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVV 313 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 313 (481)
.+|+|+||....+...++..+.+|.+.+..-|+.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999988888889999999988765434444
No 203
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.61 E-value=27 Score=32.94 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=36.8
Q ss_pred cccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+-||=||++.+++ .++|++.+-... +|. ..+ ++.+++.+++++++
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF---Lt~-----~~~~~~~~~l~~i~ 118 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH--------------LGF---LTD-----ITVDEAEKFFQAFF 118 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC--------------ccc---CCc-----CCHHHHHHHHHHHH
Confidence 45666 999999999998866 378988873311 111 112 56777777787777
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 119 ~g~ 121 (287)
T PRK14077 119 QGE 121 (287)
T ss_pred cCC
Confidence 654
No 204
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=52.33 E-value=19 Score=34.36 Aligned_cols=34 Identities=24% Similarity=0.119 Sum_probs=25.2
Q ss_pred CCccEEE-ECCCCc-chHHhhhhhcCCceEEEeccch
Q 042987 112 SNLKAFV-IDFFCN-PAFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 112 ~~pD~VI-~D~~~~-~~~~~A~~~lgiP~v~~~~~~~ 146 (481)
..||+|| .|...- .++.-| .++|||+|.++-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA-~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEA-QRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEeeCCC
Confidence 3799887 565443 466688 999999999877654
No 205
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=51.58 E-value=30 Score=32.71 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=37.6
Q ss_pred cccCcceeeeccCchhHHHhHhc----CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+-||=||+++++.. ++|++.+-.. .+|... + .+.+++.++|++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~---~-----~~~~~~~~~l~~~~ 117 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT---D-----IPLDDMQETLPPML 117 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc---c-----CCHHHHHHHHHHHH
Confidence 34566 9999999999999773 7788887321 112111 2 56777888888887
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 118 ~g~ 120 (291)
T PRK02155 118 AGN 120 (291)
T ss_pred cCC
Confidence 654
No 206
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=51.21 E-value=76 Score=29.06 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHHHHHHHhhh
Q 042987 19 MVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALVYELGELNN 98 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (481)
+.+|+++|++.| +|+++.|. .-+............+++..++..+. .....--.--.....
T Consensus 16 i~aL~~~l~~~g---~V~VvAP~-------~~~Sg~g~ait~~~pl~~~~~~~~~~---------~~~~~v~GTPaDcv~ 76 (244)
T TIGR00087 16 IRALYQALKELG---EVTVVAPA-------RQRSGTGHSLTLFEPLRVGQVKVKNG---------AHIYAVDGTPTDCVI 76 (244)
T ss_pred HHHHHHHHHhCC---CEEEEeCC-------CCccccccCcCCCCCeEEEEeccCCC---------ccEEEEcCcHHHHHH
Q ss_pred HHHHHHHHHhhccCCccEEEECCCC-------------cchHHhhhhhcCCceEEEe
Q 042987 99 PKLHETLITISKRSNLKAFVIDFFC-------------NPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~-------------~~~~~~A~~~lgiP~v~~~ 142 (481)
-.+..++.+ +||+||+..-. ..++.-| ..+|||.|.++
T Consensus 77 ~gl~~l~~~-----~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea-~~~GipaiA~S 127 (244)
T TIGR00087 77 LGINELMPE-----VPDLVISGINAGENLGTDVTYSGTVGAAMEA-AIHGVPAIAIS 127 (244)
T ss_pred HHHHHhccC-----CCCeEEeccccCCCCCccEecchhHHHHHHH-HHcCCCeEEEE
No 207
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.73 E-value=74 Score=32.08 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEe
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~ 142 (481)
.+++.++.. +||++|... ....+| +++|||++.+.
T Consensus 368 e~~~~i~~~----~pDliiG~s---~~~~~a-~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE----PVDLLIGNT---YGKYIA-RDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc----CCCEEEECc---cHHHHH-HHhCCCEEEee
Confidence 445556665 899999884 356788 99999998753
No 208
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=49.93 E-value=31 Score=31.49 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=69.3
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCC---eeEEEcCCCCC--CCCC
Q 042987 5 IVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPS---VTFHQLPPPVS--GLPD 78 (481)
Q Consensus 5 il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~--~l~~ 78 (481)
-.|+-. |+-|-..=--.||-.|+.-+ +.|.++++.+.++..+.|.+.....+....| +-.-.++.... ++++
T Consensus 21 wifVGGKGGVGKTTcs~sLAvqla~~r--~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~~~ 98 (323)
T KOG2825|consen 21 WIFVGGKGGVGKTTCSCSLAVQLAKVR--ESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDMPE 98 (323)
T ss_pred EEEEcCcCCcCccchhhHHHHHHhccC--CceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhhhhHH
Confidence 334433 56777788889999999999 9999999998888765666655444322222 22222222111 0111
Q ss_pred CC-----CCCCCchHHHHHHHHh--------hhHHHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEE
Q 042987 79 TL-----RSPADFPALVYELGEL--------NNPKLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYY 140 (481)
Q Consensus 79 ~~-----~~~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~ 140 (481)
.. .+..+-...+.+.... ...++.++++.. ++|+||.| ..+..+-- +.++.|.+.
T Consensus 99 m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~----~F~~vVFD--TAPTGHTL-RlL~fP~~l 166 (323)
T KOG2825|consen 99 MFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGM----NFDVVVFD--TAPTGHTL-RLLQFPTTL 166 (323)
T ss_pred HhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhcc----ccceEEec--cCCCccee-hhhccchHH
Confidence 11 0111111222222221 223444555555 89999999 45555555 667776543
No 209
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.43 E-value=80 Score=27.18 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=62.8
Q ss_pred CcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
+.+-.+++|.+. +.+++-++..|.+++..-... ..... ....+ + .+.+..++|
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------------~~~~~--~~~~~--~-~~~~l~ell 89 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------------KPEEG--ADEFG--V-EYVSLDELL 89 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------------HHHHH--HHHTT--E-EESSHHHHH
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------------Chhhh--ccccc--c-eeeehhhhc
Confidence 348889999986 677788888899876654332 01000 00001 2 566888999
Q ss_pred cccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeE-eecCCccCcccCHHHHHHHHH
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLA-VTRSEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~~l~~~i~ 429 (481)
+.+++ ++.|+-.+. ......|+..+ +.++=|.. +...+ .+.+..++|.++++
T Consensus 90 ~~aDi--v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aR--G~~vde~aL~~aL~ 142 (178)
T PF02826_consen 90 AQADI--VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVAR--GELVDEDALLDALE 142 (178)
T ss_dssp HH-SE--EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSS--GGGB-HHHHHHHHH
T ss_pred chhhh--hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccc--hhhhhhhHHHHHHh
Confidence 99999 887753221 13567788888 57787744 44443 45567777776665
No 210
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=49.31 E-value=98 Score=26.52 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=46.4
Q ss_pred EEcCchhhhHHHHHHHHcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHH
Q 042987 216 IVNTFELLEERAIKAMLEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQL 295 (481)
Q Consensus 216 ~~~~~~~le~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~ 295 (481)
++-+-++.-..+...+...+ |++..+|-....... ...+++.+.++...+. +|+|++|+=- .+.+
T Consensus 53 llG~~~~~~~~~~~~l~~~y-------P~l~ivg~~~g~f~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk---QE~~ 117 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRY-------PGLRIVGYHHGYFDE----EEEEAIINRINASGPD-IVFVGLGAPK---QERW 117 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHC-------CCeEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH---HHHH
Confidence 33333444444555666665 888888744432221 4567788888765443 9999998842 2211
Q ss_pred HHHHHHHHhCCCeEEEEEeC
Q 042987 296 KEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~ 315 (481)
+.+-....+..++..+|.
T Consensus 118 --~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 118 --IARHRQRLPAGVIIGVGG 135 (172)
T ss_pred --HHHHHHHCCCCEEEEECc
Confidence 222234456665555554
No 211
>PRK00784 cobyric acid synthase; Provisional
Probab=49.14 E-value=2.4e+02 Score=28.94 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=30.1
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 042987 1 MKDTIVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|+++|++... ..-|=+.-...|++.|+++| ++|..+=
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G--~~v~~~K 38 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRG--YRVAPFK 38 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEeccc
Confidence 5556777644 45899999999999999999 9988773
No 212
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=48.75 E-value=55 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=30.4
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTS--PGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~--p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+|.++|. |+-|-+.-.-+|+.+|+++| +.|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~G--kKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLG--KKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcC--CeEEEEecC
Confidence 5677776 57889999999999999999 999998543
No 213
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.50 E-value=86 Score=30.70 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVS 46 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~ 46 (481)
-|+|+-.-+.|-+.-+-.||..++++| ..+-+++..+++.-
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTFRAG 143 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcC--CceeEEeecccccc
Confidence 367777889999999999999999999 99999988877653
No 214
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=48.44 E-value=2e+02 Score=30.99 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 1 MKDTIVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 1 m~~~il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
|.+.|++.+. +..|=..-.+.|++.|.++| .+|.++
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G--~~Vg~f 37 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKG--VKVGFF 37 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEe
Confidence 5556777754 56899999999999999999 999998
No 215
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=47.85 E-value=2.3e+02 Score=27.63 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHh--CCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchhh---hhcccCcc
Q 042987 289 SFSSKQLKEMAIGLER--SGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVE---VLNHESVG 362 (481)
Q Consensus 289 ~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p~~~---ll~~~~~~ 362 (481)
....+.+.+++.-+.+ .+.+|+..-.++ +...-++..|+.. .+.+.+.+-+|++. +|.+.++
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGP-----------k~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I- 274 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGP-----------KRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI- 274 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCc-----------ccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE-
Confidence 4456776665544433 467776543322 1112233444433 56777779998764 7777777
Q ss_pred eeeeccC----chhHHHhHhcCCcEEec
Q 042987 363 GFVTHCG----WNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 363 ~~I~HgG----~gt~~eal~~GvP~l~~ 386 (481)
|++-.= .-++.||..+|.|+|..
T Consensus 275 -FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 275 -FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred -EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 776542 23567999999999975
No 216
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=47.38 E-value=90 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=21.7
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
+++++|+|-| .+.||...++|+|++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3388888866 56699999999999954
No 217
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.36 E-value=39 Score=31.89 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=39.3
Q ss_pred hhcccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 355 VLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 355 ll~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
+...+++ +|+=||=||++.+++ .++|++.+-... +|. ..+ ++++++.+++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF---Lt~-----~~~~~~~~~l~~ 116 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LGF---LAT-----VSKEEIEETIDE 116 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CCc---ccc-----cCHHHHHHHHHH
Confidence 3345666 999999999999877 378988883311 121 112 567788888888
Q ss_pred HhcCc
Q 042987 431 LMDSE 435 (481)
Q Consensus 431 ~l~~~ 435 (481)
++++.
T Consensus 117 i~~g~ 121 (292)
T PRK01911 117 LLNGD 121 (292)
T ss_pred HHcCC
Confidence 88654
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.80 E-value=38 Score=27.12 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||++.+.++..|..-..-++..|+..| ++|+......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G--~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAG--FEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 589999999999999999999999999 99999965533
No 219
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.69 E-value=1.2e+02 Score=28.69 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred ccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 358 HESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
.+++ +|+=||=||+++++. .++|++.+... .+|. + .+ ++.+++.++|.++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l--~~-----~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-L--TD-----IRPDELEFKLAEVLD 117 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-c--cc-----CCHHHHHHHHHHHHc
Confidence 4566 999999999999875 37788888542 1221 1 22 678888888888886
Q ss_pred Cc
Q 042987 434 SE 435 (481)
Q Consensus 434 ~~ 435 (481)
++
T Consensus 118 g~ 119 (295)
T PRK01231 118 GH 119 (295)
T ss_pred CC
Confidence 54
No 220
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=46.65 E-value=91 Score=34.70 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=60.7
Q ss_pred hhhcccCcceeee---ccCchhHH-HhHhcCC---cEEecccccchhHHHHHHHHHhc-eeeEeecCCccCcccCHHHHH
Q 042987 354 EVLNHESVGGFVT---HCGWNSVL-EGVCAGV---PMLAWPLYAEQKMIRAVVVEEMK-VGLAVTRSEEKDRLVSAAELE 425 (481)
Q Consensus 354 ~ll~~~~~~~~I~---HgG~gt~~-eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~l~ 425 (481)
.++.-+++ ++. .-|+|.+. |+++++. -+++++-+.-. + +.+| -|+.+++ ++.+.++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGa----a---~~L~~~AllVNP-------~D~~~vA 518 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGA----A---QSLGAGAILVNP-------WNITEVA 518 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCch----H---HHhCCceEEECC-------CCHHHHH
Confidence 46666777 554 34888555 9999955 22333332211 1 3445 4677788 7799999
Q ss_pred HHHHHHhc-CchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 042987 426 QRVSELMD-SEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 426 ~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (481)
++|.++|+ +++ +-+++.+++.+.++ ..+....++.|++.+.+.
T Consensus 519 ~AI~~AL~M~~~--Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 519 ASIAQALNMPEE--EREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHHhCCHH--HHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 99999997 333 24444555555444 344446777777777654
No 221
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=45.38 E-value=32 Score=27.54 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=25.3
Q ss_pred EEEEEcCCCcc---CHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 4 TIVFYTSPGRG---HLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 4 ~il~~~~p~~G---Hv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+|+|+--|-.+ .-.-.++|+.+..+|| |+|.++.+..
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RG--hev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRG--HEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT---EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCC--CEEEEEEcCc
Confidence 47777776555 3345788999999999 9999997653
No 222
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.01 E-value=41 Score=32.00 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=38.1
Q ss_pred cccCcceeeeccCchhHHHhHhc----CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+=||=||++.+.+. ++|++.+-.. .+|. ..+ ++.+++.+++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF---Lt~-----~~~~~~~~~l~~l~ 122 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF---LTE-----AYLNQLDEAIDQVL 122 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc---ccc-----CCHHHHHHHHHHHH
Confidence 34566 9999999999999774 7899988321 1111 112 56778888888888
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 123 ~g~ 125 (305)
T PRK02649 123 AGQ 125 (305)
T ss_pred cCC
Confidence 654
No 223
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=44.69 E-value=2.2e+02 Score=25.00 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=31.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
-|.+++..+.|=....+.+|-+...+| ++|.++
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G--~~V~iv 56 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHG--KKVGVV 56 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEE
Confidence 689999999999999999999999999 999998
No 224
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=43.77 E-value=1.4e+02 Score=31.48 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=21.9
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488898855 6779999999999984
No 225
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.73 E-value=42 Score=31.70 Aligned_cols=55 Identities=9% Similarity=0.212 Sum_probs=37.8
Q ss_pred cccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+=||=||++.++. .++|++.+-... +|.. .+ ++++++.+++++++
T Consensus 62 ~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~--------------lGFl---~~-----~~~~~~~~~l~~i~ 117 (292)
T PRK03378 62 QQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN--------------LGFL---TD-----LDPDNALQQLSDVL 117 (292)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC--------------CCcc---cc-----cCHHHHHHHHHHHH
Confidence 34566 999999999999975 378888874311 1221 12 56788888888888
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
++.
T Consensus 118 ~g~ 120 (292)
T PRK03378 118 EGH 120 (292)
T ss_pred cCC
Confidence 654
No 226
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.65 E-value=44 Score=31.66 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=38.9
Q ss_pred cccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+=||=||++.+.+ .++|++.+-.. .+|..- + ++.+++.+++++++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~---~-----~~~~~~~~~l~~i~ 122 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT---Q-----IPREYMTDKLLPVL 122 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee---c-----cCHHHHHHHHHHHH
Confidence 35666 999999999999875 37899988321 122222 2 56788888888888
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 123 ~g~ 125 (296)
T PRK04539 123 EGK 125 (296)
T ss_pred cCC
Confidence 654
No 227
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.52 E-value=59 Score=28.43 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042987 422 AELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 422 ~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (481)
.-+..-+...+-|-+ -+++++.++++++++++| .+.|.. ..++++-+.-++
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA-~~~~d~-~~lkkLq~~qme 109 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEFREA-QESGDM-KKLKKLQEKQME 109 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHhCCH-HHHHHHHHHHHH
Confidence 344455566666655 688999999999999988 454554 566666655444
No 228
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=43.27 E-value=2.1e+02 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
-|.+++.++.|=..-.+.+|-+...+| ++|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHG--YRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 377889999999999999999999999 999995
No 229
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=43.27 E-value=39 Score=34.23 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=56.5
Q ss_pred CccCHHHHHHHHHHHHh--------CCCC--eEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCC-CCCCC
Q 042987 12 GRGHLNSMVELGKLILT--------YHPC--FSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSG-LPDTL 80 (481)
Q Consensus 12 ~~GHv~P~l~La~~L~~--------~G~~--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-l~~~~ 80 (481)
+.|.+--.+.++++|.+ .|-+ -+|.++|--.+.+.-....+..+... ...+.....+|+.... +-...
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~-gt~~a~IlRvPF~~~~gi~~kw 373 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVS-GTENARILRVPFGPEKGILRKW 373 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEET-TESSEEEEEE-ESESTEEE-S-
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccC-CCCCcEEEEecCCCCcchhhhc
Confidence 56778888999999865 3400 23656653333221101222222221 2246777788865320 00111
Q ss_pred CCCCCchHHHHHHHHhhhHHHHHHHHHhhccCCccEEEECCCC--cchHHhhhhhcCCceEEEec
Q 042987 81 RSPADFPALVYELGELNNPKLHETLITISKRSNLKAFVIDFFC--NPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~--~~~~~~A~~~lgiP~v~~~~ 143 (481)
-+.-+.+..+.++... ....++++.. ..||+|+.+... ..|.+++ +++|||.+.+..
T Consensus 374 isrf~lWPyLe~fa~d---~~~~i~~e~~--~~PdlI~GnYsDgnlvA~LLs-~~lgv~~~~iaH 432 (550)
T PF00862_consen 374 ISRFDLWPYLEEFADD---AEREILAELQ--GKPDLIIGNYSDGNLVASLLS-RKLGVTQCFIAH 432 (550)
T ss_dssp --GGG-GGGHHHHHHH---HHHHHHHHHT--S--SEEEEEHHHHHHHHHHHH-HHHT-EEEEE-S
T ss_pred cchhhchhhHHHHHHH---HHHHHHHHhC--CCCcEEEeccCcchHHHHHHH-hhcCCceehhhh
Confidence 1111333434344332 2233444432 389999966322 2355577 999999877643
No 230
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=43.17 E-value=23 Score=31.15 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.0
Q ss_pred CccEEE-ECCCCcc-hHHhhhhhcCCceEEEeccch
Q 042987 113 NLKAFV-IDFFCNP-AFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 113 ~pD~VI-~D~~~~~-~~~~A~~~lgiP~v~~~~~~~ 146 (481)
.||+|| .|+..-. +..-| .++|||+|.++-+.+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA-~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEA-SEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHH-HHcCCCEEEEeeCCC
Confidence 788877 6665543 55588 999999999987654
No 231
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.67 E-value=50 Score=32.16 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCch-hhHhh-hcCCCeE-----------
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPE-GFLDR-TKDRGLV----------- 345 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~-~~~~~-~~~~~v~----------- 345 (481)
+++.+.||-....|. .++++.|++.++.+.|+........ ..+|. ++.-. +...++.
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~--------~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK--------TIIEKENIPYYSISSGKLRRYFDLKNIKDP 73 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc--------ccCcccCCcEEEEeccCcCCCchHHHHHHH
Confidence 777777776644333 3466777778899988864431110 11111 11000 0000000
Q ss_pred ---eecccchhhhhcc--cCcceeeeccCchh---HHHhHhcCCcEEeccc
Q 042987 346 ---VESWAPQVEVLNH--ESVGGFVTHCGWNS---VLEGVCAGVPMLAWPL 388 (481)
Q Consensus 346 ---v~~~~p~~~ll~~--~~~~~~I~HgG~gt---~~eal~~GvP~l~~P~ 388 (481)
...+..-..++.. |++ +|++||+-| +..|...|+|.++.=.
T Consensus 74 ~~~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 74 FLVMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 0011111223444 555 999999997 8999999999988543
No 232
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.57 E-value=47 Score=28.65 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.5
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCC
Q 042987 7 FYTSPGRGHLNSMVELGKLILTYH 30 (481)
Q Consensus 7 ~~~~p~~GHv~P~l~La~~L~~~G 30 (481)
++-.|+.||+.=|+.|.+.|.++-
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhc
Confidence 444599999999999999998775
No 233
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.32 E-value=53 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
.+|++.+.++..|-....-++..|+++| ++|+++...
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~vi~lG~~ 119 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANG--FEVIDLGRD 119 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCC--CEEEECCCC
Confidence 4899999999999999999999999999 999988544
No 234
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.11 E-value=1.2e+02 Score=31.72 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=21.9
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489998876 4679999999999984
No 235
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.06 E-value=48 Score=31.56 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=38.1
Q ss_pred cccCcceeeeccCchhHHHhHhc----CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+=||=||++.+.+. ++|++.+.... +|... + +..+++.+++++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G~--------------lGFL~---~-----~~~~~~~~~l~~i~ 126 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLGH--------------VGFLA---E-----AEAEDLDEAVERVV 126 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecCC--------------Cceec---c-----CCHHHHHHHHHHHH
Confidence 44666 9999999999998764 88999885411 22211 2 45677778888887
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
++.
T Consensus 127 ~g~ 129 (306)
T PRK03372 127 DRD 129 (306)
T ss_pred cCC
Confidence 654
No 236
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.02 E-value=1.5e+02 Score=25.12 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=52.0
Q ss_pred hhHHHhHhcCCcEEecccc--cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 042987 371 NSVLEGVCAGVPMLAWPLY--AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMK 448 (481)
Q Consensus 371 gt~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~ 448 (481)
-|+.|--.+|.=.+. |.- -=+..|++.. ++.|.=..+.-+. .+.++|.++..+=|+|...++++..+.++.
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aVkg-----~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~ 160 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAVKG-----NTKDTILAAFERRLDNDREQEFATALAEIE 160 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEeecC-----CCHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 356666666654432 111 1255799998 6779887777666 789999999999999888667777777666
Q ss_pred HHHH
Q 042987 449 EAAA 452 (481)
Q Consensus 449 ~~~~ 452 (481)
+..+
T Consensus 161 rIA~ 164 (176)
T COG3195 161 RIAL 164 (176)
T ss_pred HHHH
Confidence 5543
No 237
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.76 E-value=2.1e+02 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.4
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEec
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAW 386 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~ 386 (481)
.+++++|.|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 33488888866 566999999999999
No 238
>PRK12342 hypothetical protein; Provisional
Probab=41.53 E-value=48 Score=30.59 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcc------hHHhhhhhcCCceEEEec
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNP------AFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~------~~~~A~~~lgiP~v~~~~ 143 (481)
.+.+.++.. +||+|++...+.- +..+| +.||+|++.+..
T Consensus 100 ~La~~i~~~----~~DLVl~G~~s~D~~tgqvg~~lA-~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEKI----GFDLLLFGEGSGDLYAQQVGLLLG-ELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHh----CCCEEEEcCCcccCCCCCHHHHHH-HHhCCCcEeeEE
Confidence 444555555 7999997554432 56688 999999999765
No 239
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.01 E-value=2.4e+02 Score=24.46 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=44.2
Q ss_pred hhcccCcceeeeccCchhHH-------------HhHhc--CCcEEeccccc----ch---hHHHHHHHHHhceeeEeecC
Q 042987 355 VLNHESVGGFVTHCGWNSVL-------------EGVCA--GVPMLAWPLYA----EQ---KMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 355 ll~~~~~~~~I~HgG~gt~~-------------eal~~--GvP~l~~P~~~----DQ---~~na~~v~~~~G~G~~l~~~ 412 (481)
+...+++ .+|.-+=.||+. -++.. ++|+|++|-.. .. ..|-.++. ++|+=+.-+..
T Consensus 74 l~~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~vi~p~~ 151 (182)
T PRK07313 74 LAKRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLK-EDGVQEIEPKE 151 (182)
T ss_pred cccccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHH-HCCCEEECCCC
Confidence 3344443 466666666443 22445 89999999632 22 34677784 45765554442
Q ss_pred C-------ccCcccCHHHHHHHHHHHhc
Q 042987 413 E-------EKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 413 ~-------~~~~~~~~~~l~~~i~~~l~ 433 (481)
. ...+.-+.++|.+.+.+.+.
T Consensus 152 g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 152 GLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1 12344567788887777663
No 240
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=40.93 E-value=23 Score=31.38 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=24.7
Q ss_pred CccEEE-ECCCCcc-hHHhhhhhcCCceEEEeccch
Q 042987 113 NLKAFV-IDFFCNP-AFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 113 ~pD~VI-~D~~~~~-~~~~A~~~lgiP~v~~~~~~~ 146 (481)
.||+|| .|+..-- +..-| .++|||+|.++-+.+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA-~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEA-IEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHH-HHhCCCEEEEEeCCC
Confidence 788877 6664443 55578 999999999987654
No 241
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.58 E-value=52 Score=30.38 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHhhccCCccEEEECCCCc------chHHhhhhhcCCceEEEecc
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCN------PAFQVSSSTLSIPTYYYFTT 144 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~------~~~~~A~~~lgiP~v~~~~~ 144 (481)
.+.+.+++. .||+|++...+. -+..+| +.||+|++.+...
T Consensus 103 ~La~ai~~~----~~DLVl~G~~s~D~~tgqvg~~lA-e~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA----GFDLILCGDGSSDLYAQQVGLLVG-EILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh----CCCEEEEcCccccCCCCcHHHHHH-HHhCCCceeeEEE
Confidence 444555655 799999654432 355688 9999999997653
No 242
>PRK06321 replicative DNA helicase; Provisional
Probab=40.56 E-value=36 Score=34.68 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=29.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~ 41 (481)
|++...|+.|=..=.+.||...+ +.| ..|.|++-+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLE 264 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLE 264 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEecc
Confidence 56777799999999999999887 458 899998655
No 243
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.39 E-value=1.6e+02 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++||++++.+...-+. +|.+++.+.+-.++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 0579999977644433 566667665422778776544
No 244
>PRK08322 acetolactate synthase; Reviewed
Probab=40.35 E-value=1.5e+02 Score=30.84 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.0
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44488898855 6779999999999985
No 245
>PRK05920 aromatic acid decarboxylase; Validated
Probab=40.20 E-value=38 Score=30.04 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|.+||++--.|+.+= .=.+.+.+.|.+.| ++|+++.+...
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g--~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAAD--YEVHLVISKAA 41 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCC--CEEEEEEChhH
Confidence 557887776665554 68899999999999 99999976643
No 246
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=39.86 E-value=4.7e+02 Score=27.52 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=46.2
Q ss_pred eeeccCchhHHHhHhc---CCcEEecccccc--hhHHH--HHHHHHh--ceeeE--eecCCccCcccCHHHHHHHHHHHh
Q 042987 364 FVTHCGWNSVLEGVCA---GVPMLAWPLYAE--QKMIR--AVVVEEM--KVGLA--VTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 364 ~I~HgG~gt~~eal~~---GvP~l~~P~~~D--Q~~na--~~v~~~~--G~G~~--l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
+|.=.|.-.-+-.+.+ -+|+|.+|.... --..+ ..+ ++ |+.+. --.+. .++.-+...|.. +
T Consensus 469 ~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~--~~p~g~pv~~v~i~~~-----~~aa~~a~~i~~-~ 540 (577)
T PLN02948 469 IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV--QMPRGVPVATVAIGNA-----TNAGLLAVRMLG-A 540 (577)
T ss_pred EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh--cCCCCCeEEEEecCCh-----HHHHHHHHHHHh-c
Confidence 8877776544444333 589999999532 11222 222 34 53222 11122 456655544432 2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhc
Q 042987 433 DSEKGRAVKERAVAMKEAAAAAMRD 457 (481)
Q Consensus 433 ~~~~~~~~~~~a~~l~~~~~~~~~~ 457 (481)
.|++ ++++.+.+++.+++.+.+
T Consensus 541 ~~~~---~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 541 SDPD---LLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred CCHH---HHHHHHHHHHHHHHHHHh
Confidence 4666 888888888888865444
No 247
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.67 E-value=53 Score=30.67 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=25.0
Q ss_pred hhhhcccCcceeeeccCchhHHHhHh----cCCcEEecc
Q 042987 353 VEVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWP 387 (481)
Q Consensus 353 ~~ll~~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P 387 (481)
.++...+++ +|+=||=||++.+.+ .++|++.+-
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 444445666 999999999998755 378988874
No 248
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.55 E-value=63 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=35.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.+|++.|.++..|-....-++..|+++| .+|+++....+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G--~~vi~LG~~vp 123 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANG--FDVIDLGRDVP 123 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--cEEEECCCCCC
Confidence 4899999999999999999999999999 99999966544
No 249
>PLN02929 NADH kinase
Probab=38.04 E-value=36 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=42.5
Q ss_pred cccCcceeeeccCchhHHHhHh---cCCcEEeccccc------chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHH
Q 042987 357 NHESVGGFVTHCGWNSVLEGVC---AGVPMLAWPLYA------EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQR 427 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~ 427 (481)
..+++ +|+-||=||++.|.. .++|+|.+=... .+++|.-. +.--+|.... .+.+++.++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL~~--------~~~~~~~~~ 130 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHLCA--------ATAEDFEQV 130 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccccc--------CCHHHHHHH
Confidence 34456 999999999999854 478998885532 12222211 1102333222 567889999
Q ss_pred HHHHhcCc
Q 042987 428 VSELMDSE 435 (481)
Q Consensus 428 i~~~l~~~ 435 (481)
|.+++++.
T Consensus 131 L~~il~g~ 138 (301)
T PLN02929 131 LDDVLFGR 138 (301)
T ss_pred HHHHHcCC
Confidence 99999764
No 250
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.99 E-value=1e+02 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
-|+|+-.-+.|-+.-.-.||+.|.+.| +.|.++...+++.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRA 180 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRA 180 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHH
Confidence 477888889999999999999999999 9999998886654
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.92 E-value=1.8e+02 Score=25.59 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
-|+|+-..+-|=+.=...||..++.+| .+|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCC
Confidence 466777779999999999999999998 999999987664
No 252
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=37.68 E-value=43 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=25.0
Q ss_pred CCccEEE-ECCCCc-chHHhhhhhcCCceEEEeccch
Q 042987 112 SNLKAFV-IDFFCN-PAFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 112 ~~pD~VI-~D~~~~-~~~~~A~~~lgiP~v~~~~~~~ 146 (481)
..||+|| .|+..- .++.-| .++|||+|.++-+.+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea-~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEA-RKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHhCCCEEEEeeCCC
Confidence 4799988 555443 356678 999999999877654
No 253
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.58 E-value=2.1e+02 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.0
Q ss_pred eeeccCchhHHHhH----hcCCcEEeccc
Q 042987 364 FVTHCGWNSVLEGV----CAGVPMLAWPL 388 (481)
Q Consensus 364 ~I~HgG~gt~~eal----~~GvP~l~~P~ 388 (481)
+|--||=||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999987 34799999996
No 254
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=37.45 E-value=89 Score=26.68 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.0
Q ss_pred eeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 363 GFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 363 ~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
++++|.|-| ++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 388888744 66789999999999875
No 255
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=37.43 E-value=2.4e+02 Score=27.20 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=29.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 6 VFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 6 l~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
.=++.|+.|=+-=.+.|++.|.++| ++|.+++-.
T Consensus 41 GNltvGGTGKTP~v~~L~~~L~~~G--~~~~IlSRG 74 (326)
T PF02606_consen 41 GNLTVGGTGKTPLVIWLARLLQARG--YRPAILSRG 74 (326)
T ss_pred cccccCCCCchHHHHHHHHHHHhcC--CceEEEcCC
Confidence 3467799999999999999999999 999999754
No 256
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.42 E-value=63 Score=30.13 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=37.2
Q ss_pred ccCcceeeeccCchhHHHhHh-cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc
Q 042987 358 HESVGGFVTHCGWNSVLEGVC-AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~ 435 (481)
.+++ +|+=||-||++.+.+ ..+|++.+-.. .+|.. .+ ++.+++.++++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL---~~-----~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFL---TE-----IEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccC---cc-----cCHHHHHHHHHHHHcCC
Confidence 4555 999999999999987 45677776221 11211 12 57788888888888754
No 257
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.34 E-value=62 Score=31.11 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=31.0
Q ss_pred HHHhhhHHHHHHHHHhhccCCccEEEECCCCcch------H----HhhhhhcCCceEEEec
Q 042987 93 LGELNNPKLHETLITISKRSNLKAFVIDFFCNPA------F----QVSSSTLSIPTYYYFT 143 (481)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~----~~A~~~lgiP~v~~~~ 143 (481)
..+.....+.++++++ +||++|+.+-+..+ . .+. ++++||.++-..
T Consensus 64 n~eea~~~i~~mv~~~----~pD~viaGPaFnagrYG~acg~v~~aV~-e~~~IP~vtaM~ 119 (349)
T PF07355_consen 64 NKEEALKKILEMVKKL----KPDVVIAGPAFNAGRYGVACGEVAKAVQ-EKLGIPVVTAMY 119 (349)
T ss_pred CHHHHHHHHHHHHHhc----CCCEEEEcCCcCCchHHHHHHHHHHHHH-HhhCCCEEEEec
Confidence 3334556666777777 99999998855432 1 244 789999998543
No 258
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=37.23 E-value=1.4e+02 Score=28.11 Aligned_cols=24 Identities=0% Similarity=-0.096 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCC
Q 042987 20 VELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 20 l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
.++|..++++| ++|.++.....++
T Consensus 3 ~a~a~~~a~~g--~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQG--KKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCC--CeEEEEECCCCCC
Confidence 46889999999 9999998765544
No 259
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=37.13 E-value=2.9e+02 Score=24.95 Aligned_cols=153 Identities=13% Similarity=0.051 Sum_probs=76.8
Q ss_pred hhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecc
Q 042987 270 WLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESW 349 (481)
Q Consensus 270 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ 349 (481)
||+... +.++.|+.|.+. ..=+..|.+.+..+.++... +.+.+.+-.....+....-
T Consensus 20 ~l~~~~-~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~---------------i~~el~~l~~~~~i~~~~r 76 (223)
T PRK05562 20 SLLSNK-IKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKK---------------FSKEFLDLKKYGNLKLIKG 76 (223)
T ss_pred EEECCC-CEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCC---------------CCHHHHHHHhCCCEEEEeC
Confidence 454432 348888877765 22234455577776665432 2222322222223322221
Q ss_pred cchhhhhcccCcceeeeccCchhHHHhHh-----cCCcEEeccc--ccchhHHHHHHHHHhceeeEeecCCccCcccCHH
Q 042987 350 APQVEVLNHESVGGFVTHCGWNSVLEGVC-----AGVPMLAWPL--YAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAA 422 (481)
Q Consensus 350 ~p~~~ll~~~~~~~~I~HgG~gt~~eal~-----~GvP~l~~P~--~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~ 422 (481)
--+..-|..+.+ +|.--+--.+.+.++ .|+++.++-. ..| +..-+.+ ++-++-+.+..+. .+|.++ .
T Consensus 77 ~~~~~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~d-Fi~PAiv-~rg~l~IaIST~G-~sP~la-r 150 (223)
T PRK05562 77 NYDKEFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGL-CIIPYQR-STKNFVFALNTKG-GSPKTS-V 150 (223)
T ss_pred CCChHHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCe-EEeeeEE-ecCCEEEEEECCC-cCcHHH-H
Confidence 112233455665 787777766666543 3666655411 111 2222333 2313334443322 133333 5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 042987 423 ELEQRVSELMDSEKGRAVKERAVAMKEAAAA 453 (481)
Q Consensus 423 ~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 453 (481)
.|++.|++++. +...+-+.+.++++.+++
T Consensus 151 ~lR~~ie~~l~--~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 151 FIGEKVKNFLK--KYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 58899999983 344577777777777764
No 260
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=36.85 E-value=32 Score=31.38 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=24.7
Q ss_pred CccEEE-ECCCCcc-hHHhhhhhcCCceEEEeccch
Q 042987 113 NLKAFV-IDFFCNP-AFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 113 ~pD~VI-~D~~~~~-~~~~A~~~lgiP~v~~~~~~~ 146 (481)
.||+|| .|+..-- ++.-| .++|||+|.++-+.+
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA-~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREA-SYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHH-HHhCCCEEEEecCCC
Confidence 788877 6665443 55578 999999999987654
No 261
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=36.75 E-value=70 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=26.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
|||+.-=-+. +.-=+.+|+++|++.| |+|+++.|....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g--~~V~VvAP~~~~ 39 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALG--HDVVVVAPDSEQ 39 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTS--SEEEEEEESSST
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcC--CeEEEEeCCCCC
Confidence 3666554333 4555778999999999 999999887553
No 262
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=36.68 E-value=3.1e+02 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=34.4
Q ss_pred chhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 042987 265 HECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWV 312 (481)
Q Consensus 265 ~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 312 (481)
+.+.+|+... .+++.||=+-|.........++..++|++.|..+.-.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 4445555543 3459999998888767677888999999999876543
No 263
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.47 E-value=57 Score=26.99 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 042987 2 KDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 2 ~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
++||++.+.+..||-.-.--++++|+..| .+|....
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~G--feVi~~g 47 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAG--FEVINLG 47 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCC--ceEEecC
Confidence 35999999999999999999999999999 9998864
No 264
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.43 E-value=56 Score=20.87 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHhcC-chhHHHHHHHHHH
Q 042987 420 SAAELEQRVSELMDS-EKGRAVKERAVAM 447 (481)
Q Consensus 420 ~~~~l~~~i~~~l~~-~~~~~~~~~a~~l 447 (481)
+.++|..||..+.++ -+ +++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 468899999999876 34 77766654
No 265
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=36.35 E-value=47 Score=28.86 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
+||++.-.|+.|=.. ...+.++|+++| ++|.++.+....
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g--~~V~vv~T~~A~ 40 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRG--YQVTVLMTKAAT 40 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCC--CEEEEEEChhHH
Confidence 477777777766665 899999999999 999988766443
No 266
>PRK05973 replicative DNA helicase; Provisional
Probab=36.25 E-value=1.5e+02 Score=27.09 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++..-|+.|=..=.+.++....++| ..|.|++.+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~G--e~vlyfSlEes 103 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSG--RTGVFFTLEYT 103 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 56677789999999999999988889 99999976644
No 267
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=36.18 E-value=36 Score=33.45 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|+++|+++-.+..| +.+|+.|++.+++.+||+++.+.
T Consensus 1 m~~~vvIiG~G~AG-----~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 1 MSNGIVIIGSGFAA-----RQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCCEEEECCcHHH-----HHHHHHHHhhCcCCCEEEEeCCC
Confidence 77789999877666 78899999888778999997654
No 268
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=36.03 E-value=1.1e+02 Score=26.81 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHH
Q 042987 295 LKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVL 374 (481)
Q Consensus 295 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~ 374 (481)
-.++++.+.+.+..+|+..|. -.-|.+.|.++...+=+ ==||++ .=.++|..+..
T Consensus 68 d~~l~~~l~~~~~dlvvLAGy------------MrIL~~~fl~~~~grIl-----------NIHPSL--LP~f~G~h~~~ 122 (200)
T COG0299 68 DRALVEALDEYGPDLVVLAGY------------MRILGPEFLSRFEGRIL-----------NIHPSL--LPAFPGLHAHE 122 (200)
T ss_pred HHHHHHHHHhcCCCEEEEcch------------HHHcCHHHHHHhhcceE-----------ecCccc--ccCCCCchHHH
Confidence 445888888888888776654 33455667666653211 237888 88899999999
Q ss_pred HhHhcCCcEEecccc
Q 042987 375 EGVCAGVPMLAWPLY 389 (481)
Q Consensus 375 eal~~GvP~l~~P~~ 389 (481)
+|+.+|+..-.+-.+
T Consensus 123 ~A~~aG~k~sG~TVH 137 (200)
T COG0299 123 QALEAGVKVSGCTVH 137 (200)
T ss_pred HHHHcCCCccCcEEE
Confidence 999999998766653
No 269
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=35.99 E-value=2.1e+02 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=24.3
Q ss_pred hhhcccCcceeeeccCchhHHHhHh---------cCCcEEecc
Q 042987 354 EVLNHESVGGFVTHCGWNSVLEGVC---------AGVPMLAWP 387 (481)
Q Consensus 354 ~ll~~~~~~~~I~HgG~gt~~eal~---------~GvP~l~~P 387 (481)
.+|-..+-.+++--||.||+-|.+. +.+|++++=
T Consensus 91 ~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 91 AMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 4444444446778899999988743 589999874
No 270
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.80 E-value=73 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=36.6
Q ss_pred ccCcceeeeccCchhHHHhHh-cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhcCc
Q 042987 358 HESVGGFVTHCGWNSVLEGVC-AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~~~ 435 (481)
.+++ +|+=||=||++.|++ .++|++.+-... +|.. .+ ++.+++.+++++++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~--------------lGfl---~~-----~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGR--------------LGFL---SS-----YTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCC--------------Cccc---cc-----cCHHHHHHHHHHHHcCC
Confidence 3455 999999999999877 578888773211 1211 12 56777888888877654
No 271
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=35.52 E-value=35 Score=29.00 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|.+=+.++-+-..|=+.=.-.|.+.|+++| ++|..+=+..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G--~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARG--YRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCC--cEEEEEEecC
Confidence 445577778889999999999999999999 9999985543
No 272
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=35.34 E-value=2.7e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 9 TSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 9 ~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
+.+..|-..-.+.|++.|+++| .+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g--~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAG--YSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCC--CcEEEE
Confidence 4577888999999999999999 999886
No 273
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.27 E-value=74 Score=29.54 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=35.7
Q ss_pred cCcceeeeccCchhHHHhHhc-----CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 359 ESVGGFVTHCGWNSVLEGVCA-----GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 359 ~~~~~~I~HgG~gt~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
+++ +|+=||=||++.+++. .+|.+.+-..+ .+|.. .+ ++.+++.+++.++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~~-----~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---CD-----FHIDDLDKMIQAITK 96 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---cc-----CCHHHHHHHHHHHHc
Confidence 455 9999999999999874 56766663300 11211 22 567788888888776
Q ss_pred Cc
Q 042987 434 SE 435 (481)
Q Consensus 434 ~~ 435 (481)
++
T Consensus 97 g~ 98 (264)
T PRK03501 97 EE 98 (264)
T ss_pred CC
Confidence 54
No 274
>CHL00067 rps2 ribosomal protein S2
Probab=35.11 E-value=56 Score=29.62 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCccEEE-ECCCCc-chHHhhhhhcCCceEEEeccchh
Q 042987 112 SNLKAFV-IDFFCN-PAFQVSSSTLSIPTYYYFTTAGS 147 (481)
Q Consensus 112 ~~pD~VI-~D~~~~-~~~~~A~~~lgiP~v~~~~~~~~ 147 (481)
..||+|| .|+..- -+..-| .++|||+|.++-+.+-
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea-~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALREC-RKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHH-HHcCCCEEEEEeCCCC
Confidence 4699888 554333 366688 9999999999776543
No 275
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.80 E-value=3.6e+02 Score=27.40 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=74.6
Q ss_pred hhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecc
Q 042987 270 WLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESW 349 (481)
Q Consensus 270 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ 349 (481)
|++-.. +.++.|+.|.+. ..=++.|.+.+..+.++... +.+++.+.....++....-
T Consensus 7 ~~~l~~-~~vlvvGgG~vA-------~rk~~~ll~~ga~v~visp~---------------~~~~~~~l~~~~~i~~~~~ 63 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVA-------ERKARLLLDAGARLTVNALA---------------FIPQFTAWADAGMLTLVEG 63 (457)
T ss_pred EEEcCC-CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEcCC---------------CCHHHHHHHhCCCEEEEeC
Confidence 344433 448888888775 22234455567776555321 2223332222233322221
Q ss_pred cchhhhhcccCcceeeeccCchhHHHhHh-----cCCcEEecccccchhHH-----HHHHHHHhceeeEeecCCccCccc
Q 042987 350 APQVEVLNHESVGGFVTHCGWNSVLEGVC-----AGVPMLAWPLYAEQKMI-----RAVVVEEMKVGLAVTRSEEKDRLV 419 (481)
Q Consensus 350 ~p~~~ll~~~~~~~~I~HgG~gt~~eal~-----~GvP~l~~P~~~DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~~ 419 (481)
--+...|..+.+ +|.--+--.+++.++ .|++.-+. |++.. -..+ ++=++-+.+.... .+|.+
T Consensus 64 ~~~~~dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~~----d~~~~~~f~~pa~~-~~g~l~iaisT~G-~sP~~ 135 (457)
T PRK10637 64 PFDESLLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNVV----DAPKAASFIMPSII-DRSPLMVAVSSGG-TSPVL 135 (457)
T ss_pred CCChHHhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEEC----CCcccCeEEEeeEE-ecCCEEEEEECCC-CCcHH
Confidence 113344555665 666666555555443 45554443 33322 2223 2213444444332 12222
Q ss_pred CHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 042987 420 SAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAA 454 (481)
Q Consensus 420 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 454 (481)
+..|++.|++++. ++...+-+.+.++++.+++.
T Consensus 136 -a~~lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 136 -ARLLREKLESLLP-QHLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred -HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHh
Confidence 3568888888883 33445667777777777654
No 276
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=34.75 E-value=93 Score=32.48 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=49.2
Q ss_pred chhhhhcccCcceeeecc-Cch-hHHHhHhcCCcEEeccccc-chhHHHHH-HHHHhceeeEeecCCccCcccCHHHHHH
Q 042987 351 PQVEVLNHESVGGFVTHC-GWN-SVLEGVCAGVPMLAWPLYA-EQKMIRAV-VVEEMKVGLAVTRSEEKDRLVSAAELEQ 426 (481)
Q Consensus 351 p~~~ll~~~~~~~~I~Hg-G~g-t~~eal~~GvP~l~~P~~~-DQ~~na~~-v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (481)
++.+++.-|++++|-+-= =|| |-+||+++|||.|..=+.+ -++.+-.. -....|+-+.-+.. .+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~------~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRD------KNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSS------S-HHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCC------CCHHHHHH
Confidence 677888888885554410 122 8899999999999987743 22222110 01222555544443 36666655
Q ss_pred HHHHHh----c-Cc-hhHHHHHHHHHHHHH
Q 042987 427 RVSELM----D-SE-KGRAVKERAVAMKEA 450 (481)
Q Consensus 427 ~i~~~l----~-~~-~~~~~~~~a~~l~~~ 450 (481)
.|.+.| . +. +....|.+|+++++.
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555554 2 22 245677788777665
No 277
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=34.67 E-value=55 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCccEEE-ECCCC-cchHHhhhhhcCCceEEEeccch
Q 042987 112 SNLKAFV-IDFFC-NPAFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 112 ~~pD~VI-~D~~~-~~~~~~A~~~lgiP~v~~~~~~~ 146 (481)
..||+|| .|+.. ..+..-| .++|||+|.++-+.+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea-~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEA-RKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHcCCCEEEEeeCCC
Confidence 4799988 56543 3466688 999999999876654
No 278
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=34.62 E-value=26 Score=30.52 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCC
Q 042987 19 MVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
-..||+++..+| ++||++...
T Consensus 32 G~~lA~~~~~~G--a~V~li~g~ 52 (185)
T PF04127_consen 32 GAALAEEAARRG--AEVTLIHGP 52 (185)
T ss_dssp HHHHHHHHHHTT---EEEEEE-T
T ss_pred HHHHHHHHHHCC--CEEEEEecC
Confidence 368999999999 999999755
No 279
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.50 E-value=4.8e+02 Score=26.04 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=29.4
Q ss_pred eEeecCCccCcccCHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 042987 407 LAVTRSEEKDRLVSAAELEQRVSELMDSEKGRAVKERAVAMKEAAAA 453 (481)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 453 (481)
+.|.+.-...+...+-++.+.+.++|.+--..+-++.|.++++.+..
T Consensus 337 IvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~ 383 (441)
T COG1157 337 IVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSR 383 (441)
T ss_pred EEeeHhHHhcCCCCCcchHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Confidence 55554422234577888889998888643233366677777666553
No 280
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=34.46 E-value=2.9e+02 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489998865 5668999999999995
No 281
>PRK08760 replicative DNA helicase; Provisional
Probab=34.36 E-value=1.3e+02 Score=30.74 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=29.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~-~G~~h~Vt~~~~~~ 42 (481)
+++...|+.|=..=.+.+|...+. .| +.|.|++.+-
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEM 268 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEM 268 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccC
Confidence 667777999999999999998864 58 8899986653
No 282
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=34.34 E-value=76 Score=32.33 Aligned_cols=55 Identities=11% Similarity=0.229 Sum_probs=38.5
Q ss_pred cccCcceeeeccCchhHHHhHhc----CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
..+++ +|+=||=||++.|... ++|++.+ |.- .+|.. .+ ++.+++.++|.+++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G------~LGFL---t~-----i~~~e~~~~Le~il 316 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMG------SLGFM---TP-----FHSEQYRDCLDAIL 316 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------Cccee---cc-----cCHHHHHHHHHHHH
Confidence 34566 9999999999999774 5787776 211 13332 22 67888889999988
Q ss_pred cCc
Q 042987 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 317 ~G~ 319 (508)
T PLN02935 317 KGP 319 (508)
T ss_pred cCC
Confidence 764
No 283
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=34.20 E-value=1.5e+02 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 8 ~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
-|..+.|-+.-.+.|.++|+++| ++|.=+
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg--~~Vqpf 35 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRG--LKVQPF 35 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcC--Cccccc
Confidence 34568899999999999999999 887654
No 284
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=34.19 E-value=55 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 14 GHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 14 GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|=-.-.-.|+++|+++| |+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~~G--~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQG--HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcC--CeEEEEEccc
Confidence 33344668999999999 9999999864
No 285
>PRK14098 glycogen synthase; Provisional
Probab=33.81 E-value=59 Score=33.34 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=29.3
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~------p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
++|++++. -+.|=-.-.-+|.++|+++| |+|.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g--~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEG--FEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 47888875 24444455778999999999 9999998853
No 286
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=33.62 E-value=2.3e+02 Score=28.41 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
-|+++-.++.|=..=...||..|+++| ++|.+++...++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccc
Confidence 466777789999999999999999999 999999877654
No 287
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.24 E-value=2.4e+02 Score=26.61 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHh
Q 042987 297 EMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEG 376 (481)
Q Consensus 297 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~ea 376 (481)
.+++.+++.+..+++..+.. .-+|+.+.+..+.+-+-+ |+++ .=.+.|.+.+..|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~------------~il~~~~l~~~~~~iiNi-----------HpSL--LP~~rG~~~~~~a 210 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYM------------QVLSPELCRKLAGRAINI-----------HHSF--LPGFKGAKPYHQA 210 (286)
T ss_pred HHHHHHHHhCcCEEEEeChh------------hhCCHHHHhhccCCeEEe-----------cccc--CCCCCCCcHHHHH
Confidence 35556666666666666542 235555554443222222 4444 4445688999999
Q ss_pred HhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 377 VCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 377 l~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
+..|+....+-.+. +..+-+..+. -.-+.+... -|.++|.+.+.++
T Consensus 211 i~~G~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~~------dt~~~L~~r~~~~ 258 (286)
T PRK13011 211 YERGVKLIGATAHYVTDDLDEGPIIE---QDVERVDHA------YSPEDLVAKGRDV 258 (286)
T ss_pred HHCCCCeEEEEEEEEcCCCcCCCcEE---EEEEEcCCC------CCHHHHHHHHHHH
Confidence 99999998887642 3333333331 122333333 4788888887764
No 288
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=33.18 E-value=1.8e+02 Score=30.50 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=21.1
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
+++++|.|-| .+.+|...++|+|++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3388887755 6789999999999995
No 289
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=33.15 E-value=90 Score=26.58 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCcEEEEecCCCcCCCHHHHHHHHHHHHhC
Q 042987 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGLERS 305 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
+.+-.+|+++||......+.+...++.|++.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3344899999998765666677777777664
No 290
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=32.97 E-value=36 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=25.0
Q ss_pred CCccEEE-ECCCCc-chHHhhhhhcCCceEEEeccch
Q 042987 112 SNLKAFV-IDFFCN-PAFQVSSSTLSIPTYYYFTTAG 146 (481)
Q Consensus 112 ~~pD~VI-~D~~~~-~~~~~A~~~lgiP~v~~~~~~~ 146 (481)
..||+|| .|+..- .+..-| .++|||.|.++-+.+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea-~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREA-SKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEecCCC
Confidence 5899988 554333 355678 999999999987654
No 291
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=32.94 E-value=2.4e+02 Score=29.14 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=26.4
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEE
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~ 141 (481)
.+++++... +||++|.+. .+..+| +++|||++.+
T Consensus 428 ~l~~~l~~~----~~DlliG~s---~~k~~a-~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE----PVDFLIGNS---YGKYIQ-RDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc----CCCEEEECc---hHHHHH-HHcCCCEEEe
Confidence 455666665 999999884 356788 9999999876
No 292
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=32.85 E-value=3e+02 Score=25.98 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHh
Q 042987 297 EMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEG 376 (481)
Q Consensus 297 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~ea 376 (481)
.+++.+++.+..+++..+.. .-+++.+....+.+-+-+ |+++ .=...|.+....|
T Consensus 160 ~~~~~l~~~~~Dlivlagym------------~il~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~a 214 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM------------QVLSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQA 214 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh------------hhCCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHH
Confidence 45666666666777666542 224555554443222222 3333 3334588999999
Q ss_pred HhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 377 VCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 377 l~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
+..|+....+-.+. +..+.+..+. ---+.+... -|.++|.+.+.++
T Consensus 215 i~~G~k~tG~TvH~v~~~lD~GpII~---Q~~v~V~~~------dt~e~L~~r~~~~ 262 (289)
T PRK13010 215 HARGVKLIGATAHFVTDDLDEGPIIE---QDVERVDHS------YSPEDLVAKGRDV 262 (289)
T ss_pred HHcCCCeEEEEEEEEcCCCCCCCceE---EEEEEcCCC------CCHHHHHHHHHHH
Confidence 99999998887642 4444444442 122233333 3778887777664
No 293
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.32 E-value=1e+02 Score=24.47 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCccCHHHHH---HHHHHHHhCCCCeEEEEEeCCC
Q 042987 1 MKDTIVFYTSPGRGHLNSMV---ELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l---~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|.+++++++....|-...++ .|.++-+++| |++.+=+-..
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~~G--~~i~VE~qg~ 43 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEK--WGVKIETQGA 43 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 55679999999999999887 6888888999 9999876443
No 294
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=32.27 E-value=1.9e+02 Score=30.27 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.7
Q ss_pred eeeeccCch------hHHHhHhcCCcEEecc
Q 042987 363 GFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 363 ~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
++++|.|-| .+.+|...++|+|++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 388888855 5679999999999995
No 295
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=32.01 E-value=1.4e+02 Score=24.66 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=48.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP 72 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (481)
.+|+|++.-+.+|..-.+.+.+.+++..|+|.+.+..=. .-...+..+....+++++...+..
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~Lg-------L~~~~i~~L~~~~~n~evr~Fn~s 122 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLG-------LSEEQIKKLKKNFCNVEVRKFNFS 122 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCC-------CCHHHHHHHHhcCCceEEEECCCc
Confidence 379999999999999999999999999999999998533 222244444334468888887754
No 296
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.95 E-value=1.2e+02 Score=25.06 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.9
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEe
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVR 314 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 314 (481)
..|+|.+||......+.++.+++.+. .+.+++++..
T Consensus 52 d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 52 KTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 49999999998878888999998885 3577777654
No 297
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=31.69 E-value=1.1e+02 Score=30.08 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=47.4
Q ss_pred cceeeeccCchhHHHhHhc-----------------CCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHH
Q 042987 361 VGGFVTHCGWNSVLEGVCA-----------------GVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAE 423 (481)
Q Consensus 361 ~~~~I~HgG~gt~~eal~~-----------------GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (481)
.++++|.||..+.+.|+.+ +.|.|.++-.. ++-+.+-+ ..+|+|+..-+.+ +++.+..++
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~-~~~~md~~~ 180 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTD-EDGRMDIEA 180 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BB-TTSSB-HHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCC-cchhhhHHH
Confidence 5679999998888777533 35677776655 35554444 6889996644333 156688899
Q ss_pred HHHHHHHHhcC
Q 042987 424 LEQRVSELMDS 434 (481)
Q Consensus 424 l~~~i~~~l~~ 434 (481)
|+++|++..++
T Consensus 181 L~~~l~~~~~~ 191 (373)
T PF00282_consen 181 LEKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhhcccccc
Confidence 99998877644
No 298
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=5e+02 Score=25.29 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP 72 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (481)
+|+.++-.|.-||--.|--=|..|++.| .+|.++........ +... ..|+++++.++..
T Consensus 13 ~ra~vvVLGDvGRSPRMqYHA~Sla~~g--f~VdliGy~~s~p~--------e~l~-~hprI~ih~m~~l 71 (444)
T KOG2941|consen 13 KRAIVVVLGDVGRSPRMQYHALSLAKLG--FQVDLIGYVESIPL--------EELL-NHPRIRIHGMPNL 71 (444)
T ss_pred ceEEEEEecccCCChHHHHHHHHHHHcC--CeEEEEEecCCCCh--------HHHh-cCCceEEEeCCCC
Confidence 5899999999999999999999999999 99999965433211 1111 3689999999864
No 299
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.46 E-value=1.4e+02 Score=28.31 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=57.9
Q ss_pred CeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccc
Q 042987 244 PLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIEN 323 (481)
Q Consensus 244 ~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 323 (481)
+-.++|....++.... ....++........-..+-.-........+...+..+.+++++.|.++++-+|.+...
T Consensus 97 pdrf~~~~~v~p~~~~--~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~---- 170 (293)
T COG2159 97 PDRFVGFARVDPRDPE--AAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG---- 170 (293)
T ss_pred CcceeeeeeeCCCchH--HHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----
Confidence 3455665554433211 1234555555443222122222233334455558889999999999999977654111
Q ss_pred cccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccC--chhHHHh
Q 042987 324 RSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCG--WNSVLEG 376 (481)
Q Consensus 324 ~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG--~gt~~ea 376 (481)
..+... ....+.=..-...+|+++.++.|+| ..=..|+
T Consensus 171 -----~~~~~~----------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 171 -----AGLEKG----------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred -----cccccC----------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 000000 0001111334556788888999999 4444444
No 300
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=31.27 E-value=2.4e+02 Score=28.79 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=66.2
Q ss_pred cchh---hhhcccCcceeee--ccCchhHH-HhHhcCCc----EEecccccchhHHHHHHHHHhceeeEeecCCccCccc
Q 042987 350 APQV---EVLNHESVGGFVT--HCGWNSVL-EGVCAGVP----MLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLV 419 (481)
Q Consensus 350 ~p~~---~ll~~~~~~~~I~--HgG~gt~~-eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 419 (481)
+|+. .++..+++ ++|| .-|+|.+. |-+++-.| +|++.-++ =|+ +.|+-++.+++ +
T Consensus 340 ~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefA----GaA---~~L~~AllVNP-------~ 404 (474)
T PRK10117 340 FDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA----GAA---NELTSALIVNP-------Y 404 (474)
T ss_pred CCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEEeccc----chH---HHhCCCeEECC-------C
Confidence 4554 35566776 4554 45888665 66666543 34443221 111 35566788888 7
Q ss_pred CHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 042987 420 SAAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRGC 476 (481)
Q Consensus 420 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 476 (481)
+.+.+.++|.+.|+-+. ++-+++.+++.+.++ ........+.+++.+.+..
T Consensus 405 d~~~~A~Ai~~AL~Mp~-~Er~~R~~~l~~~v~-----~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 405 DRDEVAAALDRALTMPL-AERISRHAEMLDVIV-----KNDINHWQECFISDLKQIV 455 (474)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhh-----hCCHHHHHHHHHHHHHHhh
Confidence 89999999999997552 235556666666555 3344477888888887653
No 301
>PRK11519 tyrosine kinase; Provisional
Probab=31.17 E-value=3.2e+02 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.2
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTS--PGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~--p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++++++. |+.|=..-...||..|++.| ++|.++-..
T Consensus 527 kvi~vts~~~geGKTt~a~nLA~~la~~g--~rvLlID~D 564 (719)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTN--KRVLLIDCD 564 (719)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC
Confidence 5566555 78999999999999999999 999999544
No 302
>PRK05595 replicative DNA helicase; Provisional
Probab=30.99 E-value=39 Score=34.17 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~ 41 (481)
+++...|+.|=..=.+.+|..++ +.| +.|.|++.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlE 239 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLE 239 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecC
Confidence 56677789999999999998765 568 999999765
No 303
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=30.93 E-value=3.6e+02 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=27.8
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 4 TIVFYT-SPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 4 ~il~~~-~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
+|++.. ....|=..-...|++.|+++| ++|..+=+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G--~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRG--LRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCC--CCcceeec
Confidence 555553 356788999999999999999 99988844
No 304
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.86 E-value=95 Score=25.08 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=27.1
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHh--CCCeEEEEEe
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLER--SGVKFLWVVR 314 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~ 314 (481)
.+|+++|||......+.+..+.+.+++ .+..+-|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999986555568888888864 3556667654
No 305
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=30.60 E-value=54 Score=31.66 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 1 MKDTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|.+||.++-.|.-| ..+|..|.++| |+|+++..
T Consensus 1 ~~mkI~IiG~G~mG-----~~~A~~L~~~G--~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIG-----CYLGGRLAAAG--ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHH-----HHHHHHHHhcC--CcEEEEec
Confidence 66789999888777 45788999999 99999854
No 306
>PRK07574 formate dehydrogenase; Provisional
Probab=30.55 E-value=4.1e+02 Score=26.31 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=41.7
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhc
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~ 357 (481)
.+-.|++|++. +.+++-|+..+..++. +.... .+...... .+ +..+....++++
T Consensus 194 tVGIvG~G~IG-------~~vA~~l~~fG~~V~~-~dr~~-------------~~~~~~~~---~g--~~~~~~l~ell~ 247 (385)
T PRK07574 194 TVGIVGAGRIG-------LAVLRRLKPFDVKLHY-TDRHR-------------LPEEVEQE---LG--LTYHVSFDSLVS 247 (385)
T ss_pred EEEEECCCHHH-------HHHHHHHHhCCCEEEE-ECCCC-------------CchhhHhh---cC--ceecCCHHHHhh
Confidence 38899999986 5667777778887653 32210 11111111 12 212345678999
Q ss_pred ccCcceeeeccCchhHH
Q 042987 358 HESVGGFVTHCGWNSVL 374 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~ 374 (481)
.+++ ++.|+-.+.-.
T Consensus 248 ~aDv--V~l~lPlt~~T 262 (385)
T PRK07574 248 VCDV--VTIHCPLHPET 262 (385)
T ss_pred cCCE--EEEcCCCCHHH
Confidence 9999 99998766543
No 307
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.52 E-value=4.4e+02 Score=25.48 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=35.2
Q ss_pred chhhhhcccCcceeee------ccC---chhHHHhHhcCCcEEe---cccccchhHHHHHHHHHhceeeEee
Q 042987 351 PQVEVLNHESVGGFVT------HCG---WNSVLEGVCAGVPMLA---WPLYAEQKMIRAVVVEEMKVGLAVT 410 (481)
Q Consensus 351 p~~~ll~~~~~~~~I~------HgG---~gt~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
...++|..+++.++|- |+| ..-+.+||.+|+++|+ -|+...-..- ..++++-|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL-~~~A~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKEL-KELAKKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHH-HHHHHHcCCEEEEe
Confidence 4556776555544665 443 4456899999999999 4774422222 22334447666543
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=30.52 E-value=2.1e+02 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=34.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPFV 45 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~-G~~h~Vt~~~~~~~~~ 45 (481)
-|+++..++.|=..=...||..|+++ | ..|.+++...++.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccch
Confidence 46677778999999999999999999 9 9999998776543
No 309
>PRK05858 hypothetical protein; Provisional
Probab=30.47 E-value=3.1e+02 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.8
Q ss_pred eeeeccCch------hHHHhHhcCCcEEecc
Q 042987 363 GFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 363 ~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
+++.|.|-| .+.+|...++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 388888755 6779999999999985
No 310
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=30.27 E-value=1.4e+02 Score=29.90 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~~ 42 (481)
+++...|+.|=..=.+.+|..++ +.| +.|.|++.+-
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm 233 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEM 233 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 56777799999999999998887 678 9999997653
No 311
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=29.95 E-value=4.4e+02 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=34.2
Q ss_pred chhhhhcccCcceee--ec--cCchhHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEeecC
Q 042987 351 PQVEVLNHESVGGFV--TH--CGWNSVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 351 p~~~ll~~~~~~~~I--~H--gG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
...+++..+++ +| ++ ...--+..|+.+|+|+++-|... +|...-... .+ ++++.+...
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~a-a~-~~~v~~s~n 116 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEA-AK-KIPVVIAPN 116 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-hc-CCCEEEECc
Confidence 34455655666 55 22 22445667899999999988643 333322333 23 777777654
No 312
>PRK04940 hypothetical protein; Provisional
Probab=29.52 E-value=1.1e+02 Score=26.47 Aligned_cols=31 Identities=6% Similarity=-0.200 Sum_probs=23.8
Q ss_pred CccEEEECCCC-cchHHhhhhhcCCceEEEecc
Q 042987 113 NLKAFVIDFFC-NPAFQVSSSTLSIPTYYYFTT 144 (481)
Q Consensus 113 ~pD~VI~D~~~-~~~~~~A~~~lgiP~v~~~~~ 144 (481)
++.++|...+- +|+..+| +++|+|.|.+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La-~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIG-FLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHH-HHHCCCEEEECCC
Confidence 46788877655 3577799 9999999998653
No 313
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=29.41 E-value=4.5e+02 Score=27.59 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=21.9
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 34488998866 5569999999999995
No 314
>PRK09165 replicative DNA helicase; Provisional
Probab=29.38 E-value=2.8e+02 Score=28.60 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=28.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTY---------------HPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~---------------G~~h~Vt~~~~~ 41 (481)
+++...|+.|=..=.+.+|...+.. | ..|.|++.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlE 269 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLE 269 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCc
Confidence 5677778999999999999888653 6 789888655
No 315
>PRK14099 glycogen synthase; Provisional
Probab=29.32 E-value=83 Score=32.25 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=46.7
Q ss_pred Eeecccchh-hhh-cccCcceeee---ccCch-hHHHhHhcCCcEEeccccc--chhHHHHHHHHHh--ceeeEeecCCc
Q 042987 345 VVESWAPQV-EVL-NHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEM--KVGLAVTRSEE 414 (481)
Q Consensus 345 ~v~~~~p~~-~ll-~~~~~~~~I~---HgG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~--G~G~~l~~~~~ 414 (481)
.+.+|-... .++ ..+++ ||. +=|.| +.+||+++|+|.|+....+ |.-.......+.. +.|..++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---
Confidence 345663322 233 34666 775 34444 6689999998777764422 3221111000111 46777776
Q ss_pred cCcccCHHHHHHHHHH---HhcCch
Q 042987 415 KDRLVSAAELEQRVSE---LMDSEK 436 (481)
Q Consensus 415 ~~~~~~~~~l~~~i~~---~l~~~~ 436 (481)
-+++++.++|.+ +++|++
T Consensus 429 ----~d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 429 ----VTADALAAALRKTAALFADPV 449 (485)
T ss_pred ----CCHHHHHHHHHHHHHHhcCHH
Confidence 468999999987 555654
No 316
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=29.22 E-value=2.8e+02 Score=27.36 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=49.5
Q ss_pred hhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhcee-eEeecCCccCcccCHHHHHHHHHHH
Q 042987 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVG-LAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 353 ~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
..+++++++ +|.- =+=++.-|++.|+|.+++- =|+-+.... +++|+- ..++... ++.+.+...+.+.
T Consensus 280 ~~~l~~~dl--~Vg~-R~HsaI~al~~g~p~i~i~---Y~~K~~~l~-~~~gl~~~~~~i~~-----~~~~~l~~~~~e~ 347 (385)
T COG2327 280 GGILAACDL--IVGM-RLHSAIMALAFGVPAIAIA---YDPKVRGLM-QDLGLPGFAIDIDP-----LDAEILSAVVLER 347 (385)
T ss_pred HHHhccCce--EEee-hhHHHHHHHhcCCCeEEEe---ecHHHHHHH-HHcCCCcccccCCC-----CchHHHHHHHHHH
Confidence 557888887 6631 1226778999999999994 445555444 566765 3344444 8899999998888
Q ss_pred hcCch
Q 042987 432 MDSEK 436 (481)
Q Consensus 432 l~~~~ 436 (481)
+.+..
T Consensus 348 ~~~~~ 352 (385)
T COG2327 348 LTKLD 352 (385)
T ss_pred HhccH
Confidence 87554
No 317
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.22 E-value=73 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
-|++..+|+.|-..-.-.||++|.+++ |+|.-++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i--~~vi~l~ 36 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI--WRVIHLE 36 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh--hhccccc
Confidence 466777799999999999999999999 9987764
No 318
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.19 E-value=2.8e+02 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=22.0
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488988855 6779999999999994
No 319
>PRK11269 glyoxylate carboligase; Provisional
Probab=29.07 E-value=1.9e+02 Score=30.50 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=21.5
Q ss_pred cceeeeccC------chhHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCG------WNSVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG------~gt~~eal~~GvP~l~~P 387 (481)
.++++.|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 343677766 668889999999999984
No 320
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=29.06 E-value=70 Score=27.92 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+||++--.|+.|=..-.+.+.++|.+.| ++|+++.+..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g--~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEG--AEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCc--CEEEEEEchh
Confidence 3677777777777666679999999999 9999887553
No 321
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=29.06 E-value=60 Score=30.39 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=32.5
Q ss_pred ccCchhHH--HhHhcCCcEEecccccchhHHHHHHHHHhcee
Q 042987 367 HCGWNSVL--EGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVG 406 (481)
Q Consensus 367 HgG~gt~~--eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 406 (481)
=||||+++ -|-.+|+=++.+-++..|..++..-.+..|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 46888665 56667999999999999999998744666888
No 322
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.01 E-value=1.1e+02 Score=27.34 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.+|++.+.++..|-....=++..|+.+| .+|+++....+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G--~~Vi~LG~~vp 127 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNG--YEVIDLGVMVP 127 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--CEEEECCCCCC
Confidence 4899999999999999999999999999 99999965543
No 323
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=28.99 E-value=84 Score=29.16 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=25.0
Q ss_pred cEEEEecCCCcCCCHH-HHHHHHHHHHh--CCCeEEEEEeCC
Q 042987 278 SVLFLCFGSLGSFSSK-QLKEMAIGLER--SGVKFLWVVRAP 316 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 316 (481)
.+|+|||||......+ .+..+.+.+++ .+..+.|++.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 3899999998755444 67777777776 588999988653
No 324
>PRK05636 replicative DNA helicase; Provisional
Probab=28.79 E-value=1.6e+02 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~ 41 (481)
|++...|+.|=..=.+.+|...+ +.| ..|.|++.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlE 303 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLE 303 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEee
Confidence 56777799999999999998776 457 888888654
No 325
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.78 E-value=1.2e+02 Score=30.83 Aligned_cols=37 Identities=5% Similarity=0.164 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCCeEEEEEeCC
Q 042987 3 DTIVFYTSPGRGHLNSM------------VELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~------------l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+||++...|++=.+.|. .+||+++..+| ++||+++..
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G--A~VtlI~Gp 305 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG--AEVTLISGP 305 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC--CcEEEEeCC
Confidence 47888888887777775 68999999999 999999643
No 326
>PTZ00413 lipoate synthase; Provisional
Probab=28.76 E-value=5.5e+02 Score=25.35 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcC--CCeEeecccc-------hhhhhccc
Q 042987 289 SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKD--RGLVVESWAP-------QVEVLNHE 359 (481)
Q Consensus 289 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~--~~v~v~~~~p-------~~~ll~~~ 359 (481)
..++++....+++.+..+.++++++.....+-. |.+ ...+- ...+.++. .++.+.--+| +...|..+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~--D~g-a~~~a-~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eA 251 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLP--DGG-ASHVA-RCVELIKESNPELLLEALVGDFHGDLKSVEKLANS 251 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCC--hhh-HHHHH-HHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhc
Confidence 457888888888888888877766665321100 000 00010 11122222 2333333333 34445555
Q ss_pred CcceeeeccCchhHHHhHhcCCcEEecc-cccchhHHHHHHHHHh---ce----eeEeecCCccCcccCHHHHHHHHHHH
Q 042987 360 SVGGFVTHCGWNSVLEGVCAGVPMLAWP-LYAEQKMIRAVVVEEM---KV----GLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 360 ~~~~~I~HgG~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~---G~----G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
.+ -+.|-...| .+.++ |.|+-| ...||....-+.+++. |+ |+.+..++ |.+++.+.+.++
T Consensus 252 G~--dvynHNLET-v~rLy---p~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE------T~eEvie~m~dL 319 (398)
T PTZ00413 252 PL--SVYAHNIEC-VERIT---PYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE------TEEEVRQTLRDL 319 (398)
T ss_pred CC--CEEeccccc-CHhHH---HHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC------CHHHHHHHHHHH
Confidence 54 555556666 66666 778865 5778887776554544 43 77777776 788888888877
Q ss_pred h
Q 042987 432 M 432 (481)
Q Consensus 432 l 432 (481)
.
T Consensus 320 r 320 (398)
T PTZ00413 320 R 320 (398)
T ss_pred H
Confidence 4
No 327
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.67 E-value=3.8e+02 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=21.7
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33489998865 6679999999999883
No 328
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=28.57 E-value=1.8e+02 Score=29.74 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=57.7
Q ss_pred hhhcccCcceeee--ccCchhHH-HhHhcCCc---EEecccccchhHHHHHHHHHhc-eeeEeecCCccCcccCHHHHHH
Q 042987 354 EVLNHESVGGFVT--HCGWNSVL-EGVCAGVP---MLAWPLYAEQKMIRAVVVEEMK-VGLAVTRSEEKDRLVSAAELEQ 426 (481)
Q Consensus 354 ~ll~~~~~~~~I~--HgG~gt~~-eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~l~~ 426 (481)
.++..+++ ++|| ..|+|.+. |-+++-.+ +|++.-+. -|+ +.|+ .++.+.+ ++.+++++
T Consensus 368 aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefa----Gaa---~~L~~~al~VNP-------~d~~~~A~ 432 (474)
T PF00982_consen 368 ALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFA----GAA---EQLSEAALLVNP-------WDIEEVAD 432 (474)
T ss_dssp HHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEETTB----GGG---GT-TTS-EEE-T-------T-HHHHHH
T ss_pred HHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEeeccC----CHH---HHcCCccEEECC-------CChHHHHH
Confidence 46777887 4454 68999765 77776554 44443322 221 4567 4488888 78999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042987 427 RVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 427 ~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (481)
+|.++|+=+ .++-+++.+++.+.++. .+.....+.++++|.+
T Consensus 433 ai~~AL~M~-~~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~~ 474 (474)
T PF00982_consen 433 AIHEALTMP-PEERKERHARLREYVRE-----HDVQWWAESFLRDLKR 474 (474)
T ss_dssp HHHHHHT---HHHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhhC
Confidence 999999744 22356666666666652 3444788888888764
No 329
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.56 E-value=5.8e+02 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042987 439 AVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 439 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 468 (481)
.||.+..+++..+.+...+-|.. ++++.|
T Consensus 313 ~Mr~Ri~~mR~~lv~~L~~~~~~-~~f~~i 341 (396)
T COG1448 313 EMRQRILEMRQALVDALKALGAP-RNFDFI 341 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC-cccchH
Confidence 57777777777777666664444 344433
No 330
>PRK05748 replicative DNA helicase; Provisional
Probab=28.52 E-value=66 Score=32.55 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~~~ 43 (481)
+++...|+.|=..=.+.++...+ +.| ..|.|++.+-.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms 243 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMG 243 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 67777899999999999999876 458 89999876533
No 331
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=28.49 E-value=1.5e+02 Score=23.69 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHhhccCCccEEEEC
Q 042987 96 LNNPKLHETLITISKRSNLKAFVID 120 (481)
Q Consensus 96 ~~~~~~~~ll~~~~~~~~pD~VI~D 120 (481)
.....+.++++++ +||+|++-
T Consensus 87 ~~~~~l~~~i~~~----~p~~V~t~ 107 (128)
T PF02585_consen 87 ELVRDLEDLIREF----RPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHH-----ESEEEEE
T ss_pred HHHHHHHHHHHHc----CCCEEEEC
Confidence 3556788888888 99999854
No 332
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=28.47 E-value=5.1e+02 Score=25.13 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=42.3
Q ss_pred cccchhhhhcccCcceeee------ccCchhHHHhHhcCCcEEe-cccccchhHHHHHHHHHhceeeEe
Q 042987 348 SWAPQVEVLNHESVGGFVT------HCGWNSVLEGVCAGVPMLA-WPLYAEQKMIRAVVVEEMKVGLAV 409 (481)
Q Consensus 348 ~~~p~~~ll~~~~~~~~I~------HgG~gt~~eal~~GvP~l~-~P~~~DQ~~na~~v~~~~G~G~~l 409 (481)
.|....+++...++.++.. +-+.--+.+||.+|+.++| -|+..++-.-...++++-|+=..+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667788888888877775 2345678899999999988 577655555555555544544443
No 333
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.41 E-value=1.2e+02 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=21.3
Q ss_pred hhcccCcceeeeccCchhHHHhHhc----------CCcEEeccc
Q 042987 355 VLNHESVGGFVTHCGWNSVLEGVCA----------GVPMLAWPL 388 (481)
Q Consensus 355 ll~~~~~~~~I~HgG~gt~~eal~~----------GvP~l~~P~ 388 (481)
+|-..+-..++.-||.||..|.... .+|++++=.
T Consensus 49 ~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 49 IMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 4333343468889999999887432 449888763
No 334
>PRK07586 hypothetical protein; Validated
Probab=28.41 E-value=4.5e+02 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=19.9
Q ss_pred eeeeccCchhHH------HhHhcCCcEEecc
Q 042987 363 GFVTHCGWNSVL------EGVCAGVPMLAWP 387 (481)
Q Consensus 363 ~~I~HgG~gt~~------eal~~GvP~l~~P 387 (481)
+++.|.|-|.++ +|.+.++|+|++.
T Consensus 67 v~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 67 ATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 377887766544 7999999999985
No 335
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.11 E-value=1e+02 Score=26.95 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCc-chHHhhhhhcCCceEEEeccc
Q 042987 99 PKLHETLITISKRSNLKAFVIDFFCN-PAFQVSSSTLSIPTYYYFTTA 145 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~-~~~~~A~~~lgiP~v~~~~~~ 145 (481)
..+++++++... +..++|...+-. ++..+| +++|+|.|.+.++-
T Consensus 47 ~~l~~~i~~~~~--~~~~liGSSlGG~~A~~La-~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEELKP--ENVVLIGSSLGGFYATYLA-ERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHhCCC--CCeEEEEEChHHHHHHHHH-HHhCCCEEEEcCCC
Confidence 455666666621 123666665444 355588 99999999886643
No 336
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.86 E-value=2.8e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEe
Q 042987 15 HLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 15 Hv~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
+=.-++.+|+.|.+.| +++ ++|
T Consensus 10 ~K~~~~~~a~~l~~~G--~~i-~AT 31 (112)
T cd00532 10 VKAMLVDLAPKLSSDG--FPL-FAT 31 (112)
T ss_pred cHHHHHHHHHHHHHCC--CEE-EEC
Confidence 4456889999999999 886 344
No 337
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.83 E-value=1e+02 Score=30.53 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=29.9
Q ss_pred HHhhhHHHHHHHHHhhccCCccEEEECCCCcch------H----HhhhhhcCCceEEEe
Q 042987 94 GELNNPKLHETLITISKRSNLKAFVIDFFCNPA------F----QVSSSTLSIPTYYYF 142 (481)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~----~~A~~~lgiP~v~~~ 142 (481)
.+.....+.+++++. +||++|+.+-+..+ . .+. +++|||.++-.
T Consensus 61 ~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDK----EPDIFIAGPAFNAGRYGVACGEICKVVQ-DKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEe
Confidence 334455666677776 99999988755432 1 144 67999999865
No 338
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.68 E-value=3.9e+02 Score=22.80 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred CchhhhHHHHHHHHcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHHHHH
Q 042987 219 TFELLEERAIKAMLEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEM 298 (481)
Q Consensus 219 ~~~~le~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~ 298 (481)
+-++.-..+...+...+ |++..+|-....... ...+++.+.++...+. +|+|++|+=- .+ .+
T Consensus 54 ~~~~~~~~~~~~l~~~y-------p~l~i~g~~~g~~~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk---QE---~~ 115 (171)
T cd06533 54 AKPEVLEKAAERLRARY-------PGLKIVGYHHGYFGP----EEEEEIIERINASGAD-ILFVGLGAPK---QE---LW 115 (171)
T ss_pred CCHHHHHHHHHHHHHHC-------CCcEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH---HH---HH
Confidence 33333333444555554 888888743332221 2334477777765444 9999998842 22 22
Q ss_pred HHHH-HhCCCeEEEEEeCC
Q 042987 299 AIGL-ERSGVKFLWVVRAP 316 (481)
Q Consensus 299 ~~al-~~~~~~~i~~~~~~ 316 (481)
+... ...+..++..+|+.
T Consensus 116 ~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 116 IARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHHHCCCCEEEEecee
Confidence 2222 33466766667653
No 339
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.66 E-value=1e+02 Score=30.52 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHhhhHHHHHHHHHhhccCCccEEEECCCCcch------H----HhhhhhcCCceEEEe
Q 042987 94 GELNNPKLHETLITISKRSNLKAFVIDFFCNPA------F----QVSSSTLSIPTYYYF 142 (481)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~----~~A~~~lgiP~v~~~ 142 (481)
.+.....+.+++++. +||++|+.+-+..+ . .+. +++|||.++-.
T Consensus 61 ~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA----NPDIFIAGPAFNAGRYGMAAGAITKAVQ-DELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEe
Confidence 334456666667776 99999988755432 1 144 67999999865
No 340
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=27.64 E-value=87 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~-~G~~h~Vt~~~~~~~ 43 (481)
+||++.-.|+-| ..=...|.++|.+ .| ++|.++.+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g--~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGE--IETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcC--CeEEEEECHHH
Confidence 477777777777 6669999999999 58 99999987644
No 341
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=27.64 E-value=1.5e+02 Score=27.87 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhccCCccEEEE
Q 042987 97 NNPKLHETLITISKRSNLKAFVI 119 (481)
Q Consensus 97 ~~~~~~~ll~~~~~~~~pD~VI~ 119 (481)
....+.++++++ +||+||.
T Consensus 109 ~~~~L~~iIr~~----~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREF----RPHVITT 127 (283)
T ss_pred HHHHHHHHHHHc----CCEEEEe
Confidence 446677777777 9999985
No 342
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.60 E-value=2.7e+02 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=19.1
Q ss_pred eeeccCchhHHHhHhc-----CCcEE-eccc
Q 042987 364 FVTHCGWNSVLEGVCA-----GVPML-AWPL 388 (481)
Q Consensus 364 ~I~HgG~gt~~eal~~-----GvP~l-~~P~ 388 (481)
+|.-||=||+.|++.. ..|.| ++|.
T Consensus 61 ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 61 VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 9999999999996643 34444 5896
No 343
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=27.51 E-value=90 Score=23.86 Aligned_cols=53 Identities=6% Similarity=0.074 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCC-eeEEEc
Q 042987 16 LNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPS-VTFHQL 69 (481)
Q Consensus 16 v~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~ 69 (481)
+.|++++.+.+.+++...+|+++-.....+.. .+++.+.......++ +.+...
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 61 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTPEDL-LFRDELEALAQEYPNRFHVVYV 61 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSGGGS-TTHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcccccc-cchhHHHHHHhhcccccccccc
Confidence 78999999999954333788888655444444 566666665444444 555555
No 344
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=27.24 E-value=58 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.++-.|..|+ ++|..|.++| |+|++.+..
T Consensus 2 I~ViGaG~~G~-----AlA~~la~~g--~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGT-----ALAALLADNG--HEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHH-----HHHHHHHHCT--EEEEEETSC
T ss_pred EEEECcCHHHH-----HHHHHHHHcC--CEEEEEecc
Confidence 56666666664 7999999999 999999654
No 345
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=27.14 E-value=82 Score=27.74 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+||++--.|+.|=..-...|+++|.++| |+|.++.+..
T Consensus 6 k~IllgVTGsiaa~k~a~~lir~L~k~G--~~V~vv~T~a 43 (196)
T PRK08305 6 KRIGFGLTGSHCTYDEVMPEIEKLVDEG--AEVTPIVSYT 43 (196)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHhCc--CEEEEEECHh
Confidence 4677666565444333699999999999 9999987653
No 346
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.13 E-value=80 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEe
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~ 142 (481)
.+.+++++. +||++|.... ...+| +++|||++.+.
T Consensus 360 e~~~~i~~~----~pDliig~~~---~~~~a-~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL----KPDLIGSGIK---EKYVF-QKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh----CCCEEEecCc---chhhh-hhcCCCeEeCC
Confidence 445666666 9999998854 55678 99999997653
No 347
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.12 E-value=94 Score=32.59 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred ccCcceeeeccCchhHHHhHh----cCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 358 HESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
.+++ +|+-||=||++.+.+ .++|++.+-... +|. ..+ ++.+++.++|+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~--------------lGF---L~~-----~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT--------------VGF---LTE-----FSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC--------------CCc---Ccc-----cCHHHHHHHHHHHHc
Confidence 3455 999999999999976 478999884321 121 112 567888888888886
Q ss_pred Cc
Q 042987 434 SE 435 (481)
Q Consensus 434 ~~ 435 (481)
++
T Consensus 404 g~ 405 (569)
T PRK14076 404 GE 405 (569)
T ss_pred CC
Confidence 54
No 348
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=6e+02 Score=24.78 Aligned_cols=145 Identities=16% Similarity=0.274 Sum_probs=80.4
Q ss_pred CCCcEEEEecCCCcCCCHHHHHHHHHHHHhC---------CC-eEEEEEeCCCCCCccccccccccCchhhHhhhcCCC-
Q 042987 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGLERS---------GV-KFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRG- 343 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~---------~~-~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~- 343 (481)
++++.++||.-|-+ +.+.+..+++||... +. ..+.++.+ ++.+-+.+.+.+...+
T Consensus 252 ~~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG------------KGPlkE~Y~~~I~~~~~ 317 (444)
T KOG2941|consen 252 PERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG------------KGPLKEKYSQEIHEKNL 317 (444)
T ss_pred cCCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC------------CCchhHHHHHHHHHhcc
Confidence 34557888643322 334477788887621 22 23333333 2223344444444322
Q ss_pred --e-Eeecccc---hhhhhcccCcceeeeccCch-----hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecC
Q 042987 344 --L-VVESWAP---QVEVLNHESVGGFVTHCGWN-----SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 344 --v-~v~~~~p---~~~ll~~~~~~~~I~HgG~g-----t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
+ +...|+. +-.+|..+|+|+..|-.-.| -+.+-.-+|+|++.+-+.- .-..| ++---|...
T Consensus 318 ~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc----l~ELV-kh~eNGlvF--- 389 (444)
T KOG2941|consen 318 QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC----LDELV-KHGENGLVF--- 389 (444)
T ss_pred cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh----HHHHH-hcCCCceEe---
Confidence 2 3446864 56699999998888876555 3556667788888775532 11223 331233333
Q ss_pred CccCcccCHHHHHHHHHHHhc----Cch-hHHHHHHHHHH
Q 042987 413 EEKDRLVSAAELEQRVSELMD----SEK-GRAVKERAVAM 447 (481)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~~l~----~~~-~~~~~~~a~~l 447 (481)
-..+++.+.+.-+++ |.+ .+.+|+|+++-
T Consensus 390 ------~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 390 ------EDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred ------ccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 246788888888876 333 34566666554
No 349
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=26.77 E-value=2.4e+02 Score=25.36 Aligned_cols=116 Identities=21% Similarity=0.272 Sum_probs=68.2
Q ss_pred EE-EEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccc--hhhh
Q 042987 279 VL-FLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAP--QVEV 355 (481)
Q Consensus 279 ~v-~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p--~~~l 355 (481)
+| .+|-||.- ....++....++.+|..+.-.+.-+ . .| +.+-++ +...
T Consensus 119 ~vgvlsAGTSD---lPvAeEa~~tae~lG~ev~~~~DvG--------------V-AG-----------iHRLl~~l~r~~ 169 (254)
T COG1691 119 KVGVLSAGTSD---LPVAEEAAVTAEELGVEVQKVYDVG--------------V-AG-----------IHRLLSALKRLK 169 (254)
T ss_pred eEEEEecCCCC---cchHHHHHHHHHHhCceEEEEEeec--------------c-ch-----------HHhhhhHHHHHH
Confidence 55 88999974 4455666666677777766554322 0 01 112333 4445
Q ss_pred hcccCcceeeeccCchhHHHhHhcC---CcEEeccccc--------chhHHH--HHHHHHhceeeEeecCCccCcccCHH
Q 042987 356 LNHESVGGFVTHCGWNSVLEGVCAG---VPMLAWPLYA--------EQKMIR--AVVVEEMKVGLAVTRSEEKDRLVSAA 422 (481)
Q Consensus 356 l~~~~~~~~I~HgG~gt~~eal~~G---vP~l~~P~~~--------DQ~~na--~~v~~~~G~G~~l~~~~~~~~~~~~~ 422 (481)
...+++ +|--.|+-.++-++.+| +|+|.+|... --+.-. .-+ .-|+|+.-..+. +.+.
T Consensus 170 ~~~~~~--lIVvAGMEGaLPsvvagLvD~PVIavPTsVGYG~g~gGiaaLltMLqSC--spGv~VVNIdNG-----fGAa 240 (254)
T COG1691 170 IEDADV--LIVVAGMEGALPSVVAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSC--SPGVGVVNIDNG-----FGAA 240 (254)
T ss_pred hhCCCe--EEEEcccccchHHHHHhccCCCeEecccccccCcCCccHHHHHHHHHhc--CCCeEEEEccCc-----hHHH
Confidence 555666 88899998888888777 7999999842 111111 111 126665544444 6666
Q ss_pred HHHHHHHHHh
Q 042987 423 ELEQRVSELM 432 (481)
Q Consensus 423 ~l~~~i~~~l 432 (481)
.++..|.+..
T Consensus 241 ~~A~~I~r~~ 250 (254)
T COG1691 241 VLAVQILRRI 250 (254)
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 350
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.74 E-value=86 Score=26.97 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCcc--hHHhhhhhcCCceEEEe
Q 042987 99 PKLHETLITISKRSNLKAFVIDFFCNP--AFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~~A~~~lgiP~v~~~ 142 (481)
..++.++. + +||+||....... ....- +..|||++.+.
T Consensus 60 ~n~E~ll~-l----~PDlii~~~~~~~~~~~~~l-~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-L----KPDLVILYGGFQAQTILDKL-EQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-c----CCCEEEEecCCCchhHHHHH-HHcCCCEEEeC
Confidence 34555544 3 9999998654332 22345 67899998874
No 351
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.46 E-value=88 Score=32.32 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEEe
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~ 142 (481)
.+++++++. +||+||.+. +...+| +++|||++.++
T Consensus 365 ei~~~I~~~----~pdliiGs~---~er~ia-~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV----EPSAIFGTQ---MERHIG-KRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc----CCCEEEECc---hhhHHH-HHhCCCEEEee
Confidence 334444444 899999985 455668 99999998764
No 352
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=26.46 E-value=5.1e+02 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=29.1
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 7 FYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 7 ~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
=++.|+.|=+-=.+.|++.|+++| .+|.+++-.
T Consensus 35 NitvGGTGKTP~v~~La~~l~~~G--~~~~IlSRG 67 (311)
T TIGR00682 35 NLSVGGTGKTPVVVWLAELLKDRG--LRVGVLSRG 67 (311)
T ss_pred ccccCCcChHHHHHHHHHHHHHCC--CEEEEECCC
Confidence 356799999999999999999999 999999754
No 353
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.30 E-value=1.3e+02 Score=23.77 Aligned_cols=34 Identities=12% Similarity=-0.098 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
++..+.++..|..-...++..|.++| ++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G--~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNG--FEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCC--CEEEEcCC
Confidence 67888899999999999999999999 99999854
No 354
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=26.29 E-value=3.4e+02 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=32.1
Q ss_pred ecccccchhHHHHHHHHHhceeeEeecCCccC-------cccCHHHHH----HHHHHHhcCch
Q 042987 385 AWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKD-------RLVSAAELE----QRVSELMDSEK 436 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~-------~~~~~~~l~----~~i~~~l~~~~ 436 (481)
+.|.+.||......+-|-+-+|+....--++. -.+.++.|+ +.|+++|+|++
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 34567888888777767777887654310000 015556664 66888888876
No 355
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=26.07 E-value=2.3e+02 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.1
Q ss_pred eeeeccCch------hHHHhHhcCCcEEeccc
Q 042987 363 GFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 363 ~~I~HgG~g------t~~eal~~GvP~l~~P~ 388 (481)
+++.|.|-| .++||-..++|+|++.-
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG 106 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLTA 106 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEEC
Confidence 378887755 67799999999999943
No 356
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=26.02 E-value=39 Score=17.60 Aligned_cols=17 Identities=29% Similarity=1.023 Sum_probs=13.3
Q ss_pred hhhhhhcCCCCCcEEEE
Q 042987 266 ECLSWLDSKPSRSVLFL 282 (481)
Q Consensus 266 ~l~~~l~~~~~~~~v~v 282 (481)
.|.+|.++..++..+|+
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 47889988877777775
No 357
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.00 E-value=3.7e+02 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888866 5679999999999984
No 358
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.86 E-value=3e+02 Score=27.65 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~ 45 (481)
-|+++..++.|=..-...||..|. ++| .+|.+++...++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccch
Confidence 366777789999999999999997 689 9999998776543
No 359
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.85 E-value=1e+02 Score=30.98 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=21.7
Q ss_pred CccEEEECCCCcchHHhhhhhcCCceEEEec
Q 042987 113 NLKAFVIDFFCNPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 113 ~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~ 143 (481)
+||++|.+. ....+| +++|+|++.++.
T Consensus 370 ~pdliig~~---~~~~~a-~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQ---MERHIG-KRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecc---hhhHHH-HHcCCCEEEEeC
Confidence 899999985 455578 999999988643
No 360
>PRK13057 putative lipid kinase; Reviewed
Probab=25.80 E-value=1.5e+02 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=24.2
Q ss_pred cccCcceeeeccCchhHHHhH----hcCCcEEeccc
Q 042987 357 NHESVGGFVTHCGWNSVLEGV----CAGVPMLAWPL 388 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal----~~GvP~l~~P~ 388 (481)
...++ +|.-||=||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 99999999999885 34789999997
No 361
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.80 E-value=62 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=22.6
Q ss_pred cCcceeeeccCchhHHHhHhc----CCcEEeccc
Q 042987 359 ESVGGFVTHCGWNSVLEGVCA----GVPMLAWPL 388 (481)
Q Consensus 359 ~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~ 388 (481)
+++ +|+-||=||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 9999999999988664 689888854
No 362
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=25.73 E-value=4.6e+02 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.1
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 042987 5 IVFY-TSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 5 il~~-~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|++. |....|=..-...|++.|+++| ++|..+=
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G--~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRK--LRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCC--CceeEEc
Confidence 4444 3345777899999999999999 9998884
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=25.68 E-value=1.3e+02 Score=25.74 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++.-.|+.|=..=.+.++.+..+.| ..|.+++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 56677789999999999999999999 99999976543
No 364
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.40 E-value=4.8e+02 Score=23.12 Aligned_cols=47 Identities=19% Similarity=0.049 Sum_probs=31.4
Q ss_pred cchhhhhhcCC--CCCcEEEEecCCCcCCCHHHHHHHHHHHHhC-CCeEEEE
Q 042987 264 RHECLSWLDSK--PSRSVLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWV 312 (481)
Q Consensus 264 ~~~l~~~l~~~--~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~ 312 (481)
.+.+.+++... ....++||...|. ...+....+.+++++. +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 44566666554 3345999988776 3445577788999988 8766543
No 365
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=25.35 E-value=3.4e+02 Score=25.35 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=55.2
Q ss_pred hhhhhcCCCCCcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEe
Q 042987 267 CLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVV 346 (481)
Q Consensus 267 l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v 346 (481)
..++|..... ++++++|+... ....+...|.+.+.++......+ .
T Consensus 123 av~~L~~A~r--I~~~G~g~S~~----vA~~~~~~l~~ig~~~~~~~d~~-----------------~------------ 167 (281)
T COG1737 123 AVELLAKARR--IYFFGLGSSGL----VASDLAYKLMRIGLNVVALSDTH-----------------G------------ 167 (281)
T ss_pred HHHHHHcCCe--EEEEEechhHH----HHHHHHHHHHHcCCceeEecchH-----------------H------------
Confidence 4455655433 77777777542 23446666777787766553221 0
Q ss_pred ecccchhhhhcccCcceeeeccCch-----hHHHhHhcCCcEEecccccchh
Q 042987 347 ESWAPQVEVLNHESVGGFVTHCGWN-----SVLEGVCAGVPMLAWPLYAEQK 393 (481)
Q Consensus 347 ~~~~p~~~ll~~~~~~~~I~HgG~g-----t~~eal~~GvP~l~~P~~~DQ~ 393 (481)
.+ -+...+..-++-.+|+|.|.. .+..|-..|+|+|.+--..+-+
T Consensus 168 -~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 168 -QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred -HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 11 134445555565699999976 4556678999999996655544
No 366
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.10 E-value=4.7e+02 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=25.1
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 042987 3 DTIVFYT-SPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 3 ~~il~~~-~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
++|+++- .|..|. .||+.|+++| |+|++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G--~~V~~~d~ 130 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSG--YQVRILEQ 130 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCC--CeEEEeCC
Confidence 4788886 677775 6899999999 99999853
No 367
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=24.87 E-value=4.1e+02 Score=25.53 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=39.9
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHH-hCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLE-RSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~-~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
.+-.|++|++. +.+++-++ ..|.+++..-... ++..... .++ .+.+..++|
T Consensus 147 tvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~---------------~~~~~~~---~~~---~~~~l~ell 198 (323)
T PRK15409 147 TLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH---------------HKEAEER---FNA---RYCDLDTLL 198 (323)
T ss_pred EEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC---------------chhhHHh---cCc---EecCHHHHH
Confidence 38899999986 55566565 6788876432110 0110000 121 345778899
Q ss_pred cccCcceeeeccCchh
Q 042987 357 NHESVGGFVTHCGWNS 372 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt 372 (481)
..+|+ ++.|+-.+.
T Consensus 199 ~~sDv--v~lh~plt~ 212 (323)
T PRK15409 199 QESDF--VCIILPLTD 212 (323)
T ss_pred HhCCE--EEEeCCCCh
Confidence 99999 998887654
No 368
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=24.72 E-value=1.3e+02 Score=26.99 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=39.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.| .-+.|++++++++.+.++..+|+++-.....+.. .+.+.+.......+++++..+
T Consensus 110 ~~vliagG--tGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 110 PRWFVAGG--TGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAEL-FYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cEEEEccC--cchhHHHHHHHHHHhcCCCceEEEEEecCCHHHh-hhHHHHHHHHHhCCCeEEEEE
Confidence 57777765 4699999999999887644677777544332222 344444444334466776544
No 369
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=24.55 E-value=1.1e+02 Score=31.75 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=21.2
Q ss_pred CccEEEECCCCcchHHhhhhhcCCceEEEe
Q 042987 113 NLKAFVIDFFCNPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 113 ~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~ 142 (481)
+||+||.+. ....+| +++|||++.+.
T Consensus 362 ~PdliiG~~---~er~~a-~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSA-KRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHH-HHcCCCEEEec
Confidence 899999874 456688 99999998764
No 370
>PRK07773 replicative DNA helicase; Validated
Probab=24.47 E-value=2.6e+02 Score=31.23 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~-G~~h~Vt~~~~~ 41 (481)
|++..-|+.|=..=.+.+|...+.+ | ..|.|++.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlE 255 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLE 255 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 6677779999999999999988754 7 889888754
No 371
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.47 E-value=4.1e+02 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.0
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.++++.|.|-| .+++|...++|+|++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489998865 6779999999999994
No 372
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.28 E-value=1.3e+02 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHhhc---cCCccEEEECCCCcchHHhhhhhcCCceEEEec
Q 042987 101 LHETLITISK---RSNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 101 ~~~ll~~~~~---~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~ 143 (481)
++++++.+.. ..+..+||+|.-...+..-| ++.|||+..+..
T Consensus 14 lqaiida~~~~~~~a~i~~Visd~~~A~~lerA-~~~gIpt~~~~~ 58 (200)
T COG0299 14 LQAIIDAIKGGKLDAEIVAVISDKADAYALERA-AKAGIPTVVLDR 58 (200)
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHH-HHcCCCEEEecc
Confidence 4455555532 13678899998777888899 999999988643
No 373
>PRK05713 hypothetical protein; Provisional
Probab=24.23 E-value=1.3e+02 Score=28.76 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=38.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.|+ =+.|++++++.+.++++..+|+++......+.. .+.+.+..+....+++++..+
T Consensus 194 ~~vlIAgGt--GiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~~~~~~~~ 256 (312)
T PRK05713 194 PLWLLAAGT--GLAPLWGILREALRQGHQGPIRLLHLARDSAGH-YLAEPLAALAGRHPQLSVELV 256 (312)
T ss_pred cEEEEecCc--ChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHh-hhHHHHHHHHHHCCCcEEEEE
Confidence 566666443 389999999999988754567777544332222 345555544334456666543
No 374
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.06 E-value=1e+02 Score=29.11 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCcc-CHH---HHHHHHHHHHhCCCCeEEEEEe
Q 042987 1 MKDTIVFYTSPGRG-HLN---SMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~p~~G-Hv~---P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|+++|++++.+..- |-. -...|.++|.++| |+|.++.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g--~~v~~i~ 43 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAG--YDAHPID 43 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCC--CEEEEEe
Confidence 56689988854222 222 4578999999999 9999884
No 375
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.90 E-value=3.2e+02 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.2
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
+++++|.|-| .+.+|.+.++|+|++-
T Consensus 72 ~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 72 GVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred eEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3488888755 6679999999999984
No 376
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=23.86 E-value=1.4e+02 Score=29.55 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=40.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.|+ | +.|++++.+.+.+.++..+|+++-.....+.. .+++.++.+....+++++..+
T Consensus 263 ~~vlIagGt-G-IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~~~~~~~~~ 325 (399)
T PRK13289 263 PVVLISGGV-G-ITPMLSMLETLAAQQPKRPVHFIHAARNGGVH-AFRDEVEALAARHPNLKAHTW 325 (399)
T ss_pred cEEEEecCc-c-HHHHHHHHHHHHhcCCCCCEEEEEEeCChhhc-hHHHHHHHHHHhCCCcEEEEE
Confidence 677777554 3 99999999999866533678876544333333 455666555444556666554
No 377
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=23.79 E-value=1.6e+02 Score=28.46 Aligned_cols=63 Identities=6% Similarity=-0.007 Sum_probs=39.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.|+ -+.|++++.+++.+.++..+|+++-.....+.. .+....+.+....++++++.+
T Consensus 206 ~ivlIagGt--GiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~~~~~~~~~ 268 (339)
T PRK07609 206 PIVLLASGT--GFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDL-YLSALAEQWAEELPNFRYVPV 268 (339)
T ss_pred CEEEEecCc--ChhHHHHHHHHHHhcCCCCcEEEEEecCChHHh-ccHHHHHHHHHhCCCeEEEEE
Confidence 678887654 589999999999988743467777544333222 334444444334567776654
No 378
>PRK08266 hypothetical protein; Provisional
Probab=23.72 E-value=5.4e+02 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
++++.|.|-| .+.+|...++|+|++-
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3488888865 6779999999999984
No 379
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.71 E-value=3.4e+02 Score=26.37 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=61.8
Q ss_pred hhcccCcceeeecc---Cch-hHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHH
Q 042987 355 VLNHESVGGFVTHC---GWN-SVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSE 430 (481)
Q Consensus 355 ll~~~~~~~~I~Hg---G~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~ 430 (481)
+-.|.|+ ||+|= |.| .-.|+|+.|-|+|- |+..+. ++|-.-+. +...+=+++|.+
T Consensus 267 la~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l~---d~GYYY~~-------fD~~~G~r~L~~ 325 (364)
T PF10933_consen 267 LAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLLK---DVGYYYPD-------FDAFEGARQLLR 325 (364)
T ss_pred HHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchhc---ccCcCCCC-------ccHHHHHHHHHH
Confidence 4567777 99984 333 45699999999984 888773 58887776 446555666666
Q ss_pred Hhc--CchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042987 431 LMD--SEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 431 ~l~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 472 (481)
++. |...++|+++|+++=..+- -.. ..+++...+.|
T Consensus 326 A~~~HD~~~~~Y~~ra~~~l~~~~-----p~n-~~nv~~y~~~L 363 (364)
T PF10933_consen 326 AIREHDADLDAYRARARRLLDRLS-----PEN-PANVRAYEARL 363 (364)
T ss_pred HHHHccccHHHHHHHHHHHHHhhC-----CCC-HHHHHHHHHhh
Confidence 664 4446789999998877654 222 25666665543
No 380
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.71 E-value=3.8e+02 Score=23.15 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=41.4
Q ss_pred EEcCchhhhHHHHHHHHcccCCCCCCCCCeEEeCcccCCCCCCCCCCCcchhhhhhcCCCCCcEEEEecCCCcCCCHHHH
Q 042987 216 IVNTFELLEERAIKAMLEGQCTPGETSPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQL 295 (481)
Q Consensus 216 ~~~~~~~le~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~ 295 (481)
++-+-++.-......+...+ |++..+|- ..-..+ ...+++.+.++...++ +|+|++|+= ..|.+
T Consensus 53 llG~~~~v~~~~~~~l~~~y-------P~l~i~g~-~g~f~~----~~~~~i~~~I~~s~~d-il~VglG~P---kQE~~ 116 (177)
T TIGR00696 53 LYGGKPDVLQQLKVKLIKEY-------PKLKIVGA-FGPLEP----EERKAALAKIARSGAG-IVFVGLGCP---KQEIW 116 (177)
T ss_pred EECCCHHHHHHHHHHHHHHC-------CCCEEEEE-CCCCCh----HHHHHHHHHHHHcCCC-EEEEEcCCc---HhHHH
Confidence 33344444444445555554 76666663 111111 2335566676664443 999999883 22221
Q ss_pred HHHHHHHHhCCCeEEEEEeCC
Q 042987 296 KEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~~ 316 (481)
+.+-....+..++..+|+.
T Consensus 117 --~~~~~~~~~~~v~~gvGg~ 135 (177)
T TIGR00696 117 --MRNHRHLKPDAVMIGVGGS 135 (177)
T ss_pred --HHHhHHhCCCcEEEEecee
Confidence 1222233455666666653
No 381
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=23.68 E-value=1.3e+02 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
++.++-.|-.| ..||++|.+.| |+|++.+....
T Consensus 3 ~~~i~GtGniG-----~alA~~~a~ag--~eV~igs~r~~ 35 (211)
T COG2085 3 IIAIIGTGNIG-----SALALRLAKAG--HEVIIGSSRGP 35 (211)
T ss_pred EEEEeccChHH-----HHHHHHHHhCC--CeEEEecCCCh
Confidence 45554444333 57899999999 99999865444
No 382
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.67 E-value=1.3e+02 Score=29.37 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhh---hhcccCcc
Q 042987 286 SLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVE---VLNHESVG 362 (481)
Q Consensus 286 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~---ll~~~~~~ 362 (481)
|........+..+++++++.+.++...+..+........--....+..|-......-.+.+.+|+||.+ +|-.||+-
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~N 267 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFN 267 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccc
Q ss_pred eeeeccCchhHHHhHhcCCcEE
Q 042987 363 GFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 363 ~~I~HgG~gt~~eal~~GvP~l 384 (481)
.|= |==|+.-|..+|+|.|
T Consensus 268 fVR---GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 268 FVR---GEDSFVRAQWAGKPFV 286 (374)
T ss_pred eEe---cchHHHHHHHhCCCce
No 383
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=23.65 E-value=1.1e+02 Score=31.69 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=22.3
Q ss_pred CCccEEEECCCCcchHHhhhhhcCCceEEEec
Q 042987 112 SNLKAFVIDFFCNPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 112 ~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~~ 143 (481)
.+||+||.+. ....+| +++|||++.+..
T Consensus 363 ~~pdliiG~~---~er~~a-~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSA-KRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHH-HHcCCCEEEecC
Confidence 3899999984 466678 999999987643
No 384
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.48 E-value=1.7e+02 Score=27.40 Aligned_cols=75 Identities=11% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeecc
Q 042987 289 SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHC 368 (481)
Q Consensus 289 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~Hg 368 (481)
..+.+..+.+.+|+.+.+.+.||.+.++..- ..+.++++...+-.++.. ||=..
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga------------------------~rlL~~ld~~~~~~~pK~--~iGyS 98 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYGA------------------------NRLLPYLDYDLIRANPKI--FVGYS 98 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH------------------------HHhhhhCCHHHHhhCCeE--EEEec
Confidence 3455668889999999999999998775100 112244555555566666 77666
Q ss_pred CchhHHHhHhc--CCcEEecccc
Q 042987 369 GWNSVLEGVCA--GVPMLAWPLY 389 (481)
Q Consensus 369 G~gt~~eal~~--GvP~l~~P~~ 389 (481)
-..+++-+++. |++.+--|+.
T Consensus 99 DiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 99 DITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHHHHHHhcCceEEECccc
Confidence 66666666643 6777666654
No 385
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=23.47 E-value=2e+02 Score=26.12 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=28.1
Q ss_pred chhhhhhcCCCCCc-EEEEecCCCcCC-------C--HHHHHHHHHHHHhCCCeEEEEEeCC
Q 042987 265 HECLSWLDSKPSRS-VLFLCFGSLGSF-------S--SKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 265 ~~l~~~l~~~~~~~-~v~vs~GS~~~~-------~--~~~~~~~~~al~~~~~~~i~~~~~~ 316 (481)
..+.+||.....++ .|++ .|-+... . ...+..++..+.+.+.+++++.|..
T Consensus 20 ~~~~~~l~~~~~~~d~l~i-~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 20 AAFLRFLRGEARQADALYI-LGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred HHHHHHHHhhhccCCEEEE-ccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34666664422222 5554 5776521 1 2234456666666778888887765
No 386
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=23.44 E-value=5.4e+02 Score=27.14 Aligned_cols=52 Identities=4% Similarity=0.148 Sum_probs=28.1
Q ss_pred eccCchhHHHhHhc--CCcEE--eccc-ccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHh
Q 042987 366 THCGWNSVLEGVCA--GVPML--AWPL-YAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 366 ~HgG~gt~~eal~~--GvP~l--~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l 432 (481)
.+||+|+....... ++|+. .+|. +.+.- ....+.++.| ++++.|.+.+++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g-~~~~l~~~~G--------------l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRV-PVEELYKRNH--------------LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCC-CHHHHHHHHC--------------cCHHHHHHHHHHHh
Confidence 46999886665553 33333 3333 22222 2222323322 78888888887664
No 387
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.33 E-value=3.8e+02 Score=25.14 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhcccCcceeeeccCchhHHH
Q 042987 296 KEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLE 375 (481)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~e 375 (481)
..+++.+++.+..+|+..+.. .-+|+.+.+....+-+-+ |+++ .=...|.+.+..
T Consensus 150 ~~~~~~l~~~~~Dlivlagym------------~il~~~~l~~~~~~iINi-----------HpSL--LP~f~G~~p~~~ 204 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYM------------QILSPDFVKRYPNKIINI-----------HHSF--LPAFIGANPYQR 204 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCch------------hhCCHHHHhhccCCEEEe-----------cCCc--CCCCCCcCHHHH
Confidence 346666666677777766552 235555554443221112 3333 333468889999
Q ss_pred hHhcCCcEEecccc--cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 376 GVCAGVPMLAWPLY--AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 376 al~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
|+..|+....+-.+ .+..+.+..+. + --+.+... .|.++|.+.+.++
T Consensus 205 ai~~G~k~tG~TvH~V~e~lD~GpII~-Q--~~v~I~~~------dt~~~L~~ri~~~ 253 (280)
T TIGR00655 205 AYERGVKIIGATAHYVTEELDEGPIIE-Q--DVVRVDHT------DNVEDLIRAGRDI 253 (280)
T ss_pred HHHcCCCeEEEEEEEEcCCCcCCCeEE-E--EEEEcCCC------CCHHHHHHHHHHH
Confidence 99999999888764 23333444332 1 12222222 4788887777654
No 388
>PRK13059 putative lipid kinase; Reviewed
Probab=23.32 E-value=4.3e+02 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.1
Q ss_pred eeeccCchhHHHhH---h---cCCcEEeccc
Q 042987 364 FVTHCGWNSVLEGV---C---AGVPMLAWPL 388 (481)
Q Consensus 364 ~I~HgG~gt~~eal---~---~GvP~l~~P~ 388 (481)
+|.-||=||+.|++ . .++|+-++|.
T Consensus 60 vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 60 ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 99999999988874 2 3589999997
No 389
>PRK08051 fre FMN reductase; Validated
Probab=23.28 E-value=1e+02 Score=27.86 Aligned_cols=63 Identities=10% Similarity=0.039 Sum_probs=38.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.| .-+.|++.+++++.+.++..+|+++-.....+.. .+.+.+.......++++++.+
T Consensus 104 ~~vliagG--~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 104 PLLLIAGG--TGFSYARSILLTALAQGPNRPITLYWGGREEDHL-YDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred cEEEEecC--cCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHh-hhhHHHHHHHHHCCCcEEEEE
Confidence 57777733 3479999999999987655677765433322222 344444444444457777654
No 390
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=3.4e+02 Score=24.78 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhhccCCccEEEECCCCcc---hHHhhhhhcCCceEE
Q 042987 97 NNPKLHETLITISKRSNLKAFVIDFFCNP---AFQVSSSTLSIPTYY 140 (481)
Q Consensus 97 ~~~~~~~ll~~~~~~~~pD~VI~D~~~~~---~~~~A~~~lgiP~v~ 140 (481)
-...++.+++++. +-++.+.|..+.+ +..+| .+.|||++.
T Consensus 136 n~~aM~~~m~~Lk---~r~l~flDs~T~a~S~a~~iA-k~~gVp~~~ 178 (250)
T COG2861 136 NEDAMEKLMEALK---ERGLYFLDSGTIANSLAGKIA-KEIGVPVIK 178 (250)
T ss_pred cHHHHHHHHHHHH---HCCeEEEcccccccchhhhhH-hhcCCceee
Confidence 3456666666663 6789999987765 34478 999999887
No 391
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.51 E-value=74 Score=29.79 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.3
Q ss_pred ccCcceeeeccCchhHHHhHh---cCCcEEeccc
Q 042987 358 HESVGGFVTHCGWNSVLEGVC---AGVPMLAWPL 388 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~---~GvP~l~~P~ 388 (481)
.+++ +|.-||-||+++++. .++|++.++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 3455 999999999999874 4578888876
No 392
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=22.36 E-value=1.7e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCcchHH--hhhhhcCCceE
Q 042987 99 PKLHETLITISKRSNLKAFVIDFFCNPAFQ--VSSSTLSIPTY 139 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~--~A~~~lgiP~v 139 (481)
+.+..+++.. +.|+||.|.-.++... +. +.+|++++
T Consensus 47 eei~~~~~~~----~~d~vvfd~~Lsp~Q~rNLe-~~~~~~V~ 84 (95)
T PF13167_consen 47 EEIKELIEEL----DADLVVFDNELSPSQQRNLE-KALGVKVI 84 (95)
T ss_pred HHHHHHHhhc----CCCEEEECCCCCHHHHHHHH-HHHCCeee
Confidence 3444555554 8999999987777655 77 88888765
No 393
>PRK08617 acetolactate synthase; Reviewed
Probab=22.27 E-value=3.5e+02 Score=28.24 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=20.8
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
+++++|.|-| .+.+|...++|+|++-
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 3378887755 6779999999999995
No 394
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.26 E-value=3.5e+02 Score=23.64 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=42.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPP 72 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (481)
|+|+..+..-|-.=+..+++.|++.| .+|.+++.....+....++.+++.. ....+=.|..+|..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~--I~v~vI~~G~~~~~~~~l~~~~~~~-~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNN--VSVDIINFGEIDDNTEKLTAFIDAV-NGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCCCHHHHHHHHHHh-cCCCCceEEEeCCC
Confidence 77777787777767779999999999 9999888765543322344444443 12224566666643
No 395
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=22.21 E-value=2.1e+02 Score=25.78 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=39.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.|+ =+.|++++.+++.++++..+|+++......+.. .+.+.++......+++.++..
T Consensus 111 ~~v~iagG~--GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 111 PIIFIAGGS--GLSSPRSMILDLLERGDTRKITLFFGARTRAEL-YYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred CEEEEeCCc--CHHHHHHHHHHHHhcCCCCcEEEEEecCChhhh-ccHHHHHHHHHhCCCeEEEEE
Confidence 677777444 489999999999988733367777554333323 455555554444456666543
No 396
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=22.13 E-value=4.9e+02 Score=26.64 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 5 IVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++.-.|+.|=..=.+.++.+.+++| .+|.+++.+..
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs 302 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANK--ERAILFAYEES 302 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCC
Confidence 56666789999999999999999999 99999976644
No 397
>PRK07524 hypothetical protein; Provisional
Probab=22.09 E-value=5.7e+02 Score=26.46 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.9
Q ss_pred ceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
++++.|.|-| .+.+|...++|+|++-
T Consensus 66 gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 66 GVCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred eEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3388888866 6679999999999883
No 398
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.06 E-value=8.6e+02 Score=24.87 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=78.4
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecc-------cc
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESW-------AP 351 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~-------~p 351 (481)
+++.-.||+... ....+++.|.+.|..+-+++... ..+..-|..+. ......++..-| +.
T Consensus 73 IllgVtGsIAay---ka~~lvr~L~k~G~~V~VvmT~s---------A~~fv~p~~~~-~ls~~~V~~d~~~~~~~~~~~ 139 (475)
T PRK13982 73 VTLIIGGGIAAY---KALDLIRRLKERGAHVRCVLTKA---------AQQFVTPLTAS-ALSGQRVYTDLFDPESEFDAG 139 (475)
T ss_pred EEEEEccHHHHH---HHHHHHHHHHhCcCEEEEEECcC---------HHHHhhHHHHH-HhcCCceEecCCCcccccCcc
Confidence 666666776532 34456677777787766665442 11111122221 222222333222 23
Q ss_pred hhhhhcccCcceeeeccCchhHH-------------HhHhcCCcEEecccccch----h---HHHHHHHHHhceeeEeec
Q 042987 352 QVEVLNHESVGGFVTHCGWNSVL-------------EGVCAGVPMLAWPLYAEQ----K---MIRAVVVEEMKVGLAVTR 411 (481)
Q Consensus 352 ~~~ll~~~~~~~~I~HgG~gt~~-------------eal~~GvP~l~~P~~~DQ----~---~na~~v~~~~G~G~~l~~ 411 (481)
|-++-..+++ .+|.-+=+||+. -.+..++|++++|-.... + .|-.++. ..|+-+.-+.
T Consensus 140 Hi~la~~aD~-~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~-~~G~~vi~P~ 217 (475)
T PRK13982 140 HIRLARDCDL-IVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLK-RDGVHMIGPN 217 (475)
T ss_pred chhhhhhcCE-EEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHH-HCCCEEECCC
Confidence 4555556665 566666666544 347789999999986543 2 5778884 5587665443
Q ss_pred C--------CccCcccCHHHHHHHHHHHhc
Q 042987 412 S--------EEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 412 ~--------~~~~~~~~~~~l~~~i~~~l~ 433 (481)
. ....+...+++|...+.+++.
T Consensus 218 ~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 218 AGEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 2 122355667888888877763
No 399
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=22.05 E-value=5.1e+02 Score=22.27 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
-|.+++..+.|=..-.+.+|-+...+| ++|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g--~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHG--KKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEE
Confidence 478899999999999999999999999 999665
No 400
>PRK13055 putative lipid kinase; Reviewed
Probab=21.91 E-value=4.6e+02 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.152 Sum_probs=21.4
Q ss_pred eeeccCchhHHHhHhc------CCcEEeccc
Q 042987 364 FVTHCGWNSVLEGVCA------GVPMLAWPL 388 (481)
Q Consensus 364 ~I~HgG~gt~~eal~~------GvP~l~~P~ 388 (481)
+|--||=||+.|++.. .+|+-++|.
T Consensus 63 vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999998753 478999997
No 401
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.87 E-value=5e+02 Score=22.09 Aligned_cols=94 Identities=6% Similarity=-0.090 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEcCCCCCCCCCCCCCCCCchHHHHHHHHhhh
Q 042987 19 MVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQLPPPVSGLPDTLRSPADFPALVYELGELNN 98 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (481)
+..|.+...+.| .+|.++..... ......+......|++.+...... .- -....
T Consensus 37 ~~~l~~~~~~~~--~~ifllG~~~~-----~~~~~~~~l~~~yP~l~ivg~~~g---~f----------------~~~~~ 90 (172)
T PF03808_consen 37 FPDLLRRAEQRG--KRIFLLGGSEE-----VLEKAAANLRRRYPGLRIVGYHHG---YF----------------DEEEE 90 (172)
T ss_pred HHHHHHHHHHcC--CeEEEEeCCHH-----HHHHHHHHHHHHCCCeEEEEecCC---CC----------------ChhhH
Confidence 345566666778 89988865533 333344444456678887765432 00 00112
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCc----chHHhhhhhcCCceEEEecc
Q 042987 99 PKLHETLITISKRSNLKAFVIDFFCN----PAFQVSSSTLSIPTYYYFTT 144 (481)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~----~~~~~A~~~lgiP~v~~~~~ 144 (481)
+.+.+.+.+. +||+|++-.-++ |..... ++++.+ +.++..
T Consensus 91 ~~i~~~I~~~----~pdiv~vglG~PkQE~~~~~~~-~~l~~~-v~i~vG 134 (172)
T PF03808_consen 91 EAIINRINAS----GPDIVFVGLGAPKQERWIARHR-QRLPAG-VIIGVG 134 (172)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHH-HHCCCC-EEEEEC
Confidence 2333344444 999999886665 445555 667777 444443
No 402
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=21.84 E-value=4.4e+02 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=27.1
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCC
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 316 (481)
++++++|+... ..-+..++++|.+.|+++.+.+...
T Consensus 3 Il~~~~p~~GH--v~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 3 VLITTIGSRGD--VQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred EEEEeCCCcch--HHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 78888887663 3335678888889999988887653
No 403
>PLN03139 formate dehydrogenase; Provisional
Probab=21.84 E-value=6.7e+02 Score=24.84 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=40.3
Q ss_pred CcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
+.+-.|++|.+. ..+++.+...|.+++. +.... .+...... .++. ......+++
T Consensus 200 ktVGIVG~G~IG-------~~vA~~L~afG~~V~~-~d~~~-------------~~~~~~~~---~g~~--~~~~l~ell 253 (386)
T PLN03139 200 KTVGTVGAGRIG-------RLLLQRLKPFNCNLLY-HDRLK-------------MDPELEKE---TGAK--FEEDLDAML 253 (386)
T ss_pred CEEEEEeecHHH-------HHHHHHHHHCCCEEEE-ECCCC-------------cchhhHhh---cCce--ecCCHHHHH
Confidence 348899999986 5667777778888654 33210 11111111 1221 122567889
Q ss_pred cccCcceeeeccCchhH
Q 042987 357 NHESVGGFVTHCGWNSV 373 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~ 373 (481)
+.+++ ++.|.-.+.-
T Consensus 254 ~~sDv--V~l~lPlt~~ 268 (386)
T PLN03139 254 PKCDV--VVINTPLTEK 268 (386)
T ss_pred hhCCE--EEEeCCCCHH
Confidence 99998 8888765433
No 404
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.75 E-value=10 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.8
Q ss_pred CchhHHHhHhcCCcEEe
Q 042987 369 GWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 369 G~gt~~eal~~GvP~l~ 385 (481)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888664
No 405
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.73 E-value=1.3e+02 Score=30.26 Aligned_cols=34 Identities=9% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHhhccCCccEEEECCCCcchHHhhhhhcCCceEEE
Q 042987 100 KLHETLITISKRSNLKAFVIDFFCNPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~~A~~~lgiP~v~~ 141 (481)
.+++++++. +||++|.+.. ...+| +++|||++.+
T Consensus 363 e~~~~l~~~----~~dliiG~s~---~~~~a-~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL----KIDVLIGNSY---GRRIA-EKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc----CCCEEEECch---hHHHH-HHcCCCEEEe
Confidence 344444444 8999999853 45788 9999999875
No 406
>PRK06487 glycerate dehydrogenase; Provisional
Probab=21.57 E-value=4.8e+02 Score=24.94 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=39.3
Q ss_pred CcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
+.+-.|++|++. +.+++-++..|.+++..-... -+. ...++...++|
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~--------------~~~------------~~~~~~l~ell 195 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG--------------RPA------------RPDRLPLDELL 195 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC--------------Ccc------------cccccCHHHHH
Confidence 348999999986 566677777788876432110 000 11345678899
Q ss_pred cccCcceeeeccCch
Q 042987 357 NHESVGGFVTHCGWN 371 (481)
Q Consensus 357 ~~~~~~~~I~HgG~g 371 (481)
+.+|+ ++-|.-.+
T Consensus 196 ~~sDi--v~l~lPlt 208 (317)
T PRK06487 196 PQVDA--LTLHCPLT 208 (317)
T ss_pred HhCCE--EEECCCCC
Confidence 99999 88887544
No 407
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=21.52 E-value=1.2e+02 Score=28.71 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=47.2
Q ss_pred hhcCCCeEeecccchhhhhcccCcceeeeccCchhHHHhHhcCCcEEecccccchhHHHHHHHHHhceeeEeecCCccCc
Q 042987 338 RTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEKDR 417 (481)
Q Consensus 338 ~~~~~~v~v~~~~p~~~ll~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
+..-+++++.+|+.-..+.. .|+-...+..|+.+|+=|++++...+... ..+.+. +....
T Consensus 224 ~lgf~G~viSD~~~m~~~~~--------~~~~~~~~~~al~AG~D~~l~~~~~~~~~--~~l~~a------v~~g~---- 283 (299)
T PF00933_consen 224 ELGFDGVVISDDLEMGALSS--------NYSIEEAAVRALNAGCDMLLVCNDPDDDI--DALVEA------VESGR---- 283 (299)
T ss_dssp CS---SEEEESTTTSHHHHC--------CTTHHHHHHHHHHHT-SBEESSSSHHHHH--HHHHHH------HHTTS----
T ss_pred cccCCCeEecccchHHHHHh--------ccccchHHHHHHhCccCeeCCCCchhHHH--HHHHHH------HHcCC----
Confidence 34456889989886555432 23345578899999999999998765431 111122 12233
Q ss_pred ccCHHHHHHHHHHHhc
Q 042987 418 LVSAAELEQRVSELMD 433 (481)
Q Consensus 418 ~~~~~~l~~~i~~~l~ 433 (481)
++.++|.++++++|.
T Consensus 284 -i~~~~ld~av~RIl~ 298 (299)
T PF00933_consen 284 -ISEERLDEAVRRILR 298 (299)
T ss_dssp -SGHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhc
Confidence 899999999999873
No 408
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.49 E-value=3.2e+02 Score=28.71 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeec-----ccchhhhhcccCcceeeeccCc
Q 042987 296 KEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVES-----WAPQVEVLNHESVGGFVTHCGW 370 (481)
Q Consensus 296 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~-----~~p~~~ll~~~~~~~~I~HgG~ 370 (481)
+.+++.|++.|++.|+.+.+ .....+-+.+.+...-+-|...+ ++=...-.-.-..+++++|.|-
T Consensus 8 ~~l~~~L~~~Gv~~vFgvpG----------~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~Gp 77 (572)
T PRK08979 8 SMIVRSLIDEGVKHIFGYPG----------GSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGP 77 (572)
T ss_pred HHHHHHHHHcCCCEEEEcCC----------cchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCc
Q ss_pred h------hHHHhHhcCCcEEecc-------------cccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHH
Q 042987 371 N------SVLEGVCAGVPMLAWP-------------LYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSEL 431 (481)
Q Consensus 371 g------t~~eal~~GvP~l~~P-------------~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~ 431 (481)
| .+.+|...++|+|++. +..||....+-+. .....+...+ --.+.|.++++..
T Consensus 78 G~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~it---k~~~~v~~~~-----~~~~~l~~A~~~A 149 (572)
T PRK08979 78 GATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVV---KHSFLVKDAE-----DIPEIIKKAFYIA 149 (572)
T ss_pred hHhHHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhce---eEEEecCCHH-----HHHHHHHHHHHHH
Q ss_pred hcCc
Q 042987 432 MDSE 435 (481)
Q Consensus 432 l~~~ 435 (481)
++.+
T Consensus 150 ~~~~ 153 (572)
T PRK08979 150 STGR 153 (572)
T ss_pred hCCC
No 409
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=21.41 E-value=3.9e+02 Score=26.89 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=51.4
Q ss_pred hhhhc-ccCcceeeeccCc--------------hhHHHhHhcCCcEEecccccc-----hhHHHHHHHHHhcee-eEeec
Q 042987 353 VEVLN-HESVGGFVTHCGW--------------NSVLEGVCAGVPMLAWPLYAE-----QKMIRAVVVEEMKVG-LAVTR 411 (481)
Q Consensus 353 ~~ll~-~~~~~~~I~HgG~--------------gt~~eal~~GvP~l~~P~~~D-----Q~~na~~v~~~~G~G-~~l~~ 411 (481)
..++. |++++++|+-.|. -.+.|--.-|+|.|++=-..| ....+..+.++.++- +.+.-
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c 217 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDV 217 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEH
Confidence 45666 9999999996552 256667788999999855444 222234555555655 34444
Q ss_pred CCccCcccCHHHHHHHHHHHh
Q 042987 412 SEEKDRLVSAAELEQRVSELM 432 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~~l 432 (481)
.. ++.++|.+.++++|
T Consensus 218 ~~-----l~~~DI~~il~~vL 233 (492)
T TIGR02836 218 ES-----MRESDILSVLEEVL 233 (492)
T ss_pred HH-----cCHHHHHHHHHHHH
Confidence 45 88999999999886
No 410
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=21.40 E-value=2.4e+02 Score=24.94 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=38.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 3 DTIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
.++++++.|+ -+.|++.+++.|.+.++..+|+++-.....+.. .+.+.+..+....+.+.+..+
T Consensus 99 ~~~lliagG~--GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 99 RPVLCIAGGT--GLAPLRAIVEDALRRGEPRPVHLFFGARTERDL-YDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred CCEEEEecCc--CHHHHHHHHHHHHhcCCCCCEEEEEecCChhhh-cChHHHHHHHHhCCCeEEEEE
Confidence 3677777444 589999999999987643567766544333322 344444444334455665443
No 411
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.33 E-value=91 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 14 GHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 14 GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+.|+..|.+ |.++| |+|+++...
T Consensus 49 Ghlv~l~kL~~-fQ~aG--h~~ivLigd 73 (401)
T COG0162 49 GHLVPLMKLRR-FQDAG--HKPIVLIGD 73 (401)
T ss_pred hhHHHHHHHHH-HHHCC--CeEEEEecc
Confidence 89999998876 99999 999999654
No 412
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=21.22 E-value=2.8e+02 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=22.4
Q ss_pred ccCcceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 358 HESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 358 ~~~~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 64 kpgv--~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 64 KPSA--CMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CCeE--EEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 3444 89998855 6679999999999994
No 413
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.14 E-value=4.8e+02 Score=24.57 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=26.4
Q ss_pred CCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCC
Q 042987 285 GSLGSFSSKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 285 GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 316 (481)
|.+...+.+.++.+++|.+..+.++|..+...
T Consensus 21 ~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~ 52 (285)
T PRK07709 21 GQFNMNNLEWTQAILAAAEEEKSPVILGVSEG 52 (285)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc
Confidence 44455688899999999999999999998653
No 414
>PRK13337 putative lipid kinase; Reviewed
Probab=21.03 E-value=4.6e+02 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=21.2
Q ss_pred eeeccCchhHHHhHhc------CCcEEeccc
Q 042987 364 FVTHCGWNSVLEGVCA------GVPMLAWPL 388 (481)
Q Consensus 364 ~I~HgG~gt~~eal~~------GvP~l~~P~ 388 (481)
+|.-||=||+.|++.. ..|+-++|.
T Consensus 61 vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 61 VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 9999999999998862 358889997
No 415
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=21.01 E-value=1.6e+02 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=31.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
-++|+-.|+.|=..=..+||.+|.++| +.|+|++..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~ 142 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAP 142 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 478888888898889999999999999 999998543
No 416
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=20.95 E-value=4.8e+02 Score=21.47 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=33.9
Q ss_pred eeeccCchhHHHhHhcCCc-EEecc--cccchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc
Q 042987 364 FVTHCGWNSVLEGVCAGVP-MLAWP--LYAEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD 433 (481)
Q Consensus 364 ~I~HgG~gt~~eal~~GvP-~l~~P--~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~ 433 (481)
++..+|++.+-......-. ...-+ ......+.+... +.+|+- ...-.. .+.+++.+++++.++
T Consensus 79 v~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a-~a~G~~-~~~v~~-----~~~~el~~al~~a~~ 144 (153)
T PF02775_consen 79 VLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALA-EAFGIK-GARVTT-----PDPEELEEALREALE 144 (153)
T ss_dssp EEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHH-HHTTSE-EEEESC-----HSHHHHHHHHHHHHH
T ss_pred EEeCCcceEeccccccCcCcccccccccccccCCHHHHH-HHcCCc-EEEEcc-----CCHHHHHHHHHHHHh
Confidence 8888888877655221111 11111 113334455554 555655 222222 456999999998884
No 417
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=20.95 E-value=1.1e+02 Score=27.71 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=23.6
Q ss_pred EEEEcCCCccCHHH------------HHHHHHHHHhCCCCeEEEEEe
Q 042987 5 IVFYTSPGRGHLNS------------MVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 5 il~~~~p~~GHv~P------------~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|++...|+.=.+.| -.+||++|.++| ++|+++.
T Consensus 3 vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G--~~V~li~ 47 (229)
T PRK06732 3 ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAG--HEVTLVT 47 (229)
T ss_pred EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCC--CEEEEEE
Confidence 55555555544443 267889999999 9999985
No 418
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.95 E-value=84 Score=29.92 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.1
Q ss_pred ccCcceeeeccCchhHHHhHhc----CCcEEeccc
Q 042987 358 HESVGGFVTHCGWNSVLEGVCA----GVPMLAWPL 388 (481)
Q Consensus 358 ~~~~~~~I~HgG~gt~~eal~~----GvP~l~~P~ 388 (481)
.+++ +|.-||-||+++++.. ++|++.+..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4556 9999999999999864 889998865
No 419
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.92 E-value=2.4e+02 Score=25.53 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 1 MKDTIVFYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 1 m~~~il~~~~-p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|+ -|.|... |+.|=..-.+.||.+|+++| -.|+++=..+.
T Consensus 1 M~-vItf~s~KGGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn 41 (231)
T PF07015_consen 1 MP-VITFASSKGGAGKTTAAMALASELAARG--ARVALIDADPN 41 (231)
T ss_pred CC-eEEEecCCCCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 53 3444444 89999999999999999999 99999954433
No 420
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=20.91 E-value=1.4e+02 Score=27.94 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=38.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCC-CeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHP-CFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~-~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.|+ | +.|++++++.+.+.+. ..+|+++-.....+.. .+.+.++.+....++++++..
T Consensus 152 ~~vlIAgGt-G-ItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~~~~~~~~ 215 (283)
T cd06188 152 EMVFIGGGA-G-MAPLRSHIFHLLKTLKSKRKISFWYGARSLKEL-FYQEEFEALEKEFPNFKYHPV 215 (283)
T ss_pred cEEEEEecc-c-HhHHHHHHHHHHhcCCCCceEEEEEecCCHHHh-hHHHHHHHHHHHCCCeEEEEE
Confidence 677887553 4 9999999999765541 1478876543332222 455555555444567766544
No 421
>PHA00490 terminal protein
Probab=20.91 E-value=2.4e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhccCCCC
Q 042987 440 VKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRGCIAPF 480 (481)
Q Consensus 440 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 480 (481)
|.++..+|+.-+.++++..-.+.-..+++++.|++.+.++|
T Consensus 175 Ye~~m~qlq~NFI~sVEgsFNS~~~aDelve~LkkiPpDDF 215 (266)
T PHA00490 175 YEESMRQLQDNFIRSVEGSFNSYWEADELVEKLKKIPPDDF 215 (266)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHhcCCchHH
Confidence 78889999998888776666666789999999999988765
No 422
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.91 E-value=1.4e+02 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=26.5
Q ss_pred eecccchhhhhcccCc--ceeeeccCchhHHHhHhcCCcEE
Q 042987 346 VESWAPQVEVLNHESV--GGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 346 v~~~~p~~~ll~~~~~--~~~I~HgG~gt~~eal~~GvP~l 384 (481)
+.+|.-+..+|..++= =+.+||||.-++-.++..|.=+|
T Consensus 467 vsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viV 507 (561)
T COG2987 467 VSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIV 507 (561)
T ss_pred hhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEE
Confidence 5588777777766441 13789999877777766665444
No 423
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.51 E-value=5.2e+02 Score=21.75 Aligned_cols=138 Identities=19% Similarity=0.313 Sum_probs=77.1
Q ss_pred EEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHh---hhcCCCeEeecccchhhh
Q 042987 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLD---RTKDRGLVVESWAPQVEV 355 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~v~v~~~~p~~~l 355 (481)
.|-|-+||-+ +.+.++..++.|+++++.+-..+-+. +.-|+.+.+ ....+++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA------------HRTPe~m~~ya~~a~~~g~----------- 58 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA------------HRTPEKMFEYAEEAEERGV----------- 58 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec------------cCCHHHHHHHHHHHHHCCC-----------
Confidence 4666788876 66778888899999888775444221 112332221 1222233
Q ss_pred hcccCcceeeeccCchhH---HHhHhcCCcEEecccccc----hhHHHHHHHHHhceeeEeec---CCccCcccCHHHHH
Q 042987 356 LNHESVGGFVTHCGWNSV---LEGVCAGVPMLAWPLYAE----QKMIRAVVVEEMKVGLAVTR---SEEKDRLVSAAELE 425 (481)
Q Consensus 356 l~~~~~~~~I~HgG~gt~---~eal~~GvP~l~~P~~~D----Q~~na~~v~~~~G~G~~l~~---~~~~~~~~~~~~l~ 425 (481)
+++|.-.|.--= +-|-..-+|+|.+|.... +..--..+ ++--|+-+.. .+. .|+.-+.
T Consensus 59 ------~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiV--QMP~GvPVaTvaIg~a----~NAallA 126 (162)
T COG0041 59 ------KVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIV--QMPAGVPVATVAIGNA----ANAALLA 126 (162)
T ss_pred ------eEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHh--cCCCCCeeEEEeecch----hhHHHHH
Confidence 237765553211 123445789999999732 22222222 4455553332 110 3555555
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHhc
Q 042987 426 QRVSELMDSEKGRAVKERAVAMKEAAAAAMRD 457 (481)
Q Consensus 426 ~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~ 457 (481)
..|..+ .|++ ++++.+++++..++.+.+
T Consensus 127 a~ILa~-~d~~---l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 127 AQILAI-KDPE---LAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHHHcC-CCHH---HHHHHHHHHHHHHHHHHh
Confidence 544433 4676 999999999998865433
No 424
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=20.50 E-value=4.5e+02 Score=27.51 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.0
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.+++++|.|-| .+.+|.+.++|+|++.
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488898866 5679999999999995
No 425
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=20.50 E-value=1.9e+02 Score=25.98 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=38.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeeEEEc
Q 042987 4 TIVFYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVSSAGTDDYIASVSATAPSVTFHQL 69 (481)
Q Consensus 4 ~il~~~~p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (481)
++++++.| .| +.|++++++++.+.++..+|+++......+.. .+.+.+..+....+++++..+
T Consensus 105 ~~l~iagG-~G-iap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 105 PIVLIGGG-SG-MAPLLSLLRDMAASGSDRPVRFFYGARTARDL-FYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cEEEEecC-cc-hhHHHHHHHHHHhcCCCCcEEEEEeccchHHh-ccHHHHHHHHHhCCCEEEEEE
Confidence 67777633 33 88999999999988744468887544333322 445555544334456665433
No 426
>PRK06932 glycerate dehydrogenase; Provisional
Probab=20.43 E-value=5.3e+02 Score=24.63 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred cEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhhc
Q 042987 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll~ 357 (481)
.+..|++|++. +.+++.++..|.+++. +... . .. .. ...+.+.+++|+
T Consensus 149 tvgIiG~G~IG-------~~va~~l~~fg~~V~~-~~~~------------~--~~---------~~-~~~~~~l~ell~ 196 (314)
T PRK06932 149 TLGVFGKGCLG-------TEVGRLAQALGMKVLY-AEHK------------G--AS---------VC-REGYTPFEEVLK 196 (314)
T ss_pred EEEEECCCHHH-------HHHHHHHhcCCCEEEE-ECCC------------c--cc---------cc-ccccCCHHHHHH
Confidence 48899999986 5666667778888654 2211 0 00 00 113567889999
Q ss_pred ccCcceeeeccCch
Q 042987 358 HESVGGFVTHCGWN 371 (481)
Q Consensus 358 ~~~~~~~I~HgG~g 371 (481)
.+|+ ++-|+-.+
T Consensus 197 ~sDi--v~l~~Plt 208 (314)
T PRK06932 197 QADI--VTLHCPLT 208 (314)
T ss_pred hCCE--EEEcCCCC
Confidence 9999 88787544
No 427
>PLN02939 transferase, transferring glycosyl groups
Probab=20.38 E-value=1.7e+02 Score=32.67 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.4
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 042987 3 DTIVFYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~------p~~GHv~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+||++++. -+.|=-.-.-.|.++|++.| |+|.+++|...
T Consensus 482 mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G--hdV~VIlP~Y~ 526 (977)
T PLN02939 482 LHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG--HLVEIVLPKYD 526 (977)
T ss_pred CEEEEEEcccccccccccHHHHHHHHHHHHHHcC--CeEEEEeCCCc
Confidence 57898875 13344445678999999999 99999998643
No 428
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=1.8e+02 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=31.8
Q ss_pred cEEEEEcC-------CCccCHHHHHH---HHHHHHhCCCCeEEEEEeCCCCCC
Q 042987 3 DTIVFYTS-------PGRGHLNSMVE---LGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 3 ~~il~~~~-------p~~GHv~P~l~---La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
+++++.|. +=-||+.++++ +|+-++.+| ++|.|+|.+..+-
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G--~~v~fvtGtDeHG 55 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRG--YEVFFLTGTDEHG 55 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC--CeEEEEeccCCCC
Confidence 46666654 34699998885 899999999 9999999765543
No 429
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=20.32 E-value=3.2e+02 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=22.9
Q ss_pred EEEecCCCc---CCCHHHHHHHHHHHHhCCCeEEEEE
Q 042987 280 LFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVV 313 (481)
Q Consensus 280 v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~ 313 (481)
|.|-||..+ ..+......++++|++.+.++...-
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 334445444 4455667779999999999877663
No 430
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=20.21 E-value=2.7e+02 Score=25.78 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHhceeeEeecCCccCcccCHHHHHHHHHHHhc--Cch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 042987 390 AEQKMIRAVVVEEMKVGLAVTRSEEKDRLVSAAELEQRVSELMD--SEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALD 466 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~~i~~~l~--~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 466 (481)
++..+-+.|+ ..--|-...-.. ..-+.+.++|.++|+ |.+ .+..+.+-+++.+++...-.+.||+...+.
T Consensus 60 ae~~fl~er~--~ip~gY~~~~~~-----e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIA 132 (302)
T PTZ00119 60 AERDFLSERN--QIPNGYIGLWQY-----DDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIG 132 (302)
T ss_pred HHHHHHHHhc--cCCccceecccc-----cchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 3445555554 224454444433 456778889999975 544 345555666666666654456788877777
Q ss_pred HHHHHHHh
Q 042987 467 NLVESFKR 474 (481)
Q Consensus 467 ~~~~~~~~ 474 (481)
.|.+.|..
T Consensus 133 iLTeRI~~ 140 (302)
T PTZ00119 133 CLTEKILN 140 (302)
T ss_pred HHHHHHHH
Confidence 66665554
No 431
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.12 E-value=5.8e+02 Score=26.75 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=21.9
Q ss_pred cceeeeccCch------hHHHhHhcCCcEEecc
Q 042987 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~I~HgG~g------t~~eal~~GvP~l~~P 387 (481)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488888855 6779999999999994
No 432
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=20.09 E-value=1.4e+02 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.4
Q ss_pred CccEEEECCCCcchHHhhhhhcCCceEEEe
Q 042987 113 NLKAFVIDFFCNPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 113 ~pD~VI~D~~~~~~~~~A~~~lgiP~v~~~ 142 (481)
+||++|.. +.+..+| +++|||.+.+.
T Consensus 350 ~pDl~Ig~---s~~~~~a-~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGT---TPLVQYA-KEKGIPALYYT 375 (416)
T ss_pred CCCEEEeC---ChhhHHH-HHhCCCEEEec
Confidence 99999988 3356678 99999998853
No 433
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=20.08 E-value=4.8e+02 Score=24.86 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=56.0
Q ss_pred CcEEEEecCCCcCCCHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchhhhh
Q 042987 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p~~~ll 356 (481)
+.+-.|++|++. +.+++-++..|.+++.. ... ... ...+ + .+.+..++|
T Consensus 146 ktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~-d~~--------------~~~------~~~~--~-~~~~l~ell 194 (311)
T PRK08410 146 KKWGIIGLGTIG-------KRVAKIAQAFGAKVVYY-STS--------------GKN------KNEE--Y-ERVSLEELL 194 (311)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhcCCEEEEE-CCC--------------ccc------cccC--c-eeecHHHHh
Confidence 348999999986 45566666678886543 221 000 0001 1 355788899
Q ss_pred cccCcceeeeccCchhHHHhHhcCCcEEeccccc--chhHHHHHHHHHhceeeEe-ecCCccCcccCHHHHHHHHH
Q 042987 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--EQKMIRAVVVEEMKVGLAV-TRSEEKDRLVSAAELEQRVS 429 (481)
Q Consensus 357 ~~~~~~~~I~HgG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l-~~~~~~~~~~~~~~l~~~i~ 429 (481)
+.+|+ ++-|. |... ....|+..+ +.++=|..+ ...+ .+.+..+.|.++++
T Consensus 195 ~~sDv--v~lh~------------------Plt~~T~~li~~~~~-~~Mk~~a~lIN~aR--G~vVDe~AL~~AL~ 247 (311)
T PRK08410 195 KTSDI--ISIHA------------------PLNEKTKNLIAYKEL-KLLKDGAILINVGR--GGIVNEKDLAKALD 247 (311)
T ss_pred hcCCE--EEEeC------------------CCCchhhcccCHHHH-HhCCCCeEEEECCC--ccccCHHHHHHHHH
Confidence 99998 88775 4432 334566666 455655443 2222 34455555555554
Done!