Query 042988
Match_columns 255
No_of_seqs 151 out of 1474
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6.6E-47 1.4E-51 330.7 17.3 212 5-220 3-214 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 3.6E-22 7.9E-27 150.0 8.5 87 132-218 1-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 7.1E-21 1.5E-25 142.9 6.1 86 10-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 1E-13 2.2E-18 121.9 4.6 91 6-99 123-213 (243)
5 COG4095 Uncharacterized conser 99.3 8.1E-12 1.8E-16 92.7 6.9 83 131-216 5-87 (89)
6 COG4095 Uncharacterized conser 99.0 8.1E-10 1.8E-14 82.0 7.3 83 6-94 3-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.5 1.3E-05 2.8E-10 70.3 18.8 194 13-213 6-219 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 1.9E-05 4.1E-10 54.9 5.7 55 13-69 4-58 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 2.1E-05 4.5E-10 54.7 5.7 56 133-191 4-59 (61)
10 KOG3211 Predicted endoplasmic 97.4 0.0047 1E-07 53.3 12.4 194 9-220 32-229 (230)
11 KOG2913 Predicted membrane pro 96.9 0.014 3.1E-07 52.4 11.7 200 10-217 8-249 (260)
12 PRK01021 lpxB lipid-A-disaccha 95.9 0.35 7.7E-06 48.4 15.4 180 14-208 13-213 (608)
13 TIGR00951 2A43 Lysosomal Cysti 95.5 0.022 4.7E-07 50.0 4.8 49 132-183 5-53 (220)
14 PF03650 MPC: Uncharacterised 94.7 0.0068 1.5E-07 48.0 -0.7 63 159-221 39-103 (119)
15 smart00679 CTNS Repeated motif 93.5 0.077 1.7E-06 31.7 2.5 27 25-51 2-28 (32)
16 PHA02246 hypothetical protein 93.0 4.6 0.0001 33.7 15.6 172 13-206 7-185 (192)
17 KOG1589 Uncharacterized conser 92.9 0.025 5.5E-07 43.9 -0.4 59 159-217 43-103 (118)
18 smart00679 CTNS Repeated motif 91.8 0.16 3.5E-06 30.3 2.4 29 148-176 2-30 (32)
19 PF10688 Imp-YgjV: Bacterial i 91.0 0.84 1.8E-05 38.1 6.6 125 47-206 29-153 (163)
20 KOG1589 Uncharacterized conser 89.9 0.17 3.6E-06 39.5 1.3 58 36-94 43-100 (118)
21 PF03650 MPC: Uncharacterised 89.8 0.17 3.7E-06 40.1 1.4 59 36-95 39-97 (119)
22 PHA02246 hypothetical protein 85.2 6.8 0.00015 32.7 8.2 65 16-82 114-178 (192)
23 KOG2489 Transmembrane protein 82.4 34 0.00073 33.8 12.8 167 17-185 327-520 (592)
24 COG3952 Predicted membrane pro 77.7 8.7 0.00019 29.9 5.9 81 133-217 28-108 (113)
25 KOG3145 Cystine transporter Cy 77.6 7.9 0.00017 35.7 6.6 34 12-45 125-158 (372)
26 PF07578 LAB_N: Lipid A Biosyn 77.0 2.3 4.9E-05 30.9 2.4 45 159-203 22-66 (72)
27 PF06027 DUF914: Eukaryotic pr 74.6 66 0.0014 30.0 12.1 46 154-204 251-297 (334)
28 KOG2913 Predicted membrane pro 72.4 7.6 0.00017 35.0 5.1 85 131-218 9-94 (260)
29 PF07857 DUF1632: CEO family ( 71.3 9.7 0.00021 34.2 5.5 44 174-217 93-139 (254)
30 PF06946 Phage_holin_5: Phage 65.1 14 0.00031 28.0 4.5 54 171-224 39-92 (93)
31 KOG2325 Predicted transporter/ 64.6 43 0.00092 33.0 8.9 27 194-220 209-235 (488)
32 KOG3211 Predicted endoplasmic 54.6 29 0.00062 30.4 5.1 68 24-93 155-222 (230)
33 PF06123 CreD: Inner membrane 54.3 1.1E+02 0.0023 29.8 9.5 36 153-193 370-406 (430)
34 PRK11715 inner membrane protei 49.9 1.3E+02 0.0029 29.1 9.5 49 134-193 363-412 (436)
35 PF05602 CLPTM1: Cleft lip and 49.8 30 0.00064 33.3 5.1 70 14-86 305-375 (438)
36 PF03219 TLC: TLC ATP/ADP tran 49.3 2.7E+02 0.0058 27.4 12.8 32 3-34 174-205 (491)
37 TIGR00341 conserved hypothetic 48.9 1.2E+02 0.0026 28.2 8.7 44 180-223 256-299 (325)
38 PF05961 Chordopox_A13L: Chord 48.0 18 0.00039 25.8 2.4 22 198-219 8-29 (68)
39 TIGR00910 2A0307_GadC glutamat 46.2 2.3E+02 0.0051 27.6 10.8 13 175-187 410-422 (507)
40 KOG2887 Membrane protein invol 43.8 1.9E+02 0.0041 24.6 8.3 70 133-213 82-151 (175)
41 PF15102 TMEM154: TMEM154 prot 42.0 32 0.0007 28.3 3.4 30 191-220 60-89 (146)
42 PRK11387 S-methylmethionine tr 39.6 97 0.0021 29.7 6.9 32 196-227 438-469 (471)
43 TIGR02003 PTS-II-BC-unk1 PTS s 39.5 2.3E+02 0.0051 28.3 9.6 31 180-212 397-433 (548)
44 cd08764 Cyt_b561_CG1275_like N 39.4 2.6E+02 0.0057 24.4 9.8 22 131-152 97-118 (214)
45 PRK05771 V-type ATP synthase s 38.8 4.3E+02 0.0093 26.7 14.4 40 23-68 325-364 (646)
46 PF07578 LAB_N: Lipid A Biosyn 38.4 60 0.0013 23.5 3.9 60 19-82 6-65 (72)
47 PF06196 DUF997: Protein of un 37.4 44 0.00094 24.6 3.2 23 169-191 10-32 (80)
48 smart00730 PSN Presenilin, sig 37.1 2.1E+02 0.0044 25.5 8.1 7 249-255 174-180 (249)
49 PF09586 YfhO: Bacterial membr 35.8 5.1E+02 0.011 26.7 16.3 17 26-42 231-247 (843)
50 PRK10255 PTS system N-acetyl g 35.6 3.5E+02 0.0076 27.7 10.3 59 144-210 284-355 (648)
51 PF06570 DUF1129: Protein of u 35.3 2.8E+02 0.0061 23.6 10.0 48 170-217 150-201 (206)
52 KOG1590 Uncharacterized conser 34.0 50 0.0011 26.3 3.2 66 146-213 36-103 (132)
53 PF10688 Imp-YgjV: Bacterial i 33.3 31 0.00068 28.7 2.1 36 48-86 118-153 (163)
54 KOG3618 Adenylyl cyclase [Gene 31.7 6.6E+02 0.014 26.8 12.6 45 26-81 73-118 (1318)
55 TIGR01998 PTS-II-BC-nag PTS sy 31.3 3.1E+02 0.0068 26.8 8.9 33 178-212 336-370 (476)
56 PRK10591 hypothetical protein; 31.1 96 0.0021 23.5 4.1 27 194-220 57-83 (92)
57 PHA03049 IMV membrane protein; 30.5 50 0.0011 23.5 2.4 23 198-220 8-30 (68)
58 PF07690 MFS_1: Major Facilita 29.8 3.7E+02 0.008 23.3 8.8 6 182-187 140-145 (352)
59 PRK10110 bifunctional PTS syst 28.9 4E+02 0.0086 26.5 9.3 61 144-209 345-414 (530)
60 PF07214 DUF1418: Protein of u 28.3 1E+02 0.0022 23.6 3.9 23 194-216 57-79 (96)
61 TIGR02004 PTS-IIBC-malX PTS sy 27.3 4.6E+02 0.01 26.0 9.4 56 144-207 336-403 (517)
62 KOG4314 Predicted carbohydrate 26.3 2.7E+02 0.0059 24.5 6.6 56 126-181 127-183 (290)
63 PF13965 SID-1_RNA_chan: dsRNA 26.3 6.8E+02 0.015 25.2 13.5 39 140-182 461-499 (570)
64 PTZ00207 hypothetical protein; 26.1 90 0.002 31.4 4.3 40 146-186 470-511 (591)
65 KOG3106 ER lumen protein retai 26.0 2.3E+02 0.005 24.6 6.1 60 146-210 128-191 (212)
66 TIGR01943 rnfA electron transp 24.0 4.6E+02 0.01 22.5 11.1 28 150-177 150-181 (190)
67 KOG2504 Monocarboxylate transp 23.5 7.1E+02 0.015 24.4 12.9 103 40-149 333-441 (509)
68 PRK10746 putative transport pr 22.8 2.2E+02 0.0048 27.3 6.1 29 195-223 430-458 (461)
69 PF07857 DUF1632: CEO family ( 22.6 1.6E+02 0.0035 26.4 4.8 66 131-196 180-254 (254)
70 KOG3807 Predicted membrane pro 22.5 1.3E+02 0.0029 28.5 4.3 33 186-218 58-90 (556)
71 PF08693 SKG6: Transmembrane a 22.2 1E+02 0.0022 19.8 2.4 20 198-217 21-40 (40)
72 PRK11387 S-methylmethionine tr 21.0 4.5E+02 0.0098 25.1 7.9 22 14-35 370-391 (471)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6.6e-47 Score=330.66 Aligned_cols=212 Identities=40% Similarity=0.733 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHH
Q 042988 5 GLIRTVVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIEL 84 (255)
Q Consensus 5 ~~~~~i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~ 84 (255)
+....++|.+|.+.|++++++|.|+++||+|+||+|+.+..||+++++||.+|+.|| ++.+++..++.+|++|+.+++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 455546668999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccc
Q 042988 85 FYVLIFVIFSSWGKRRKIFVALVVEVVFMAILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKY 164 (255)
Q Consensus 85 ~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~ 164 (255)
+|+..|+.|+++|++. .........++++.++.+....|+++.+.+.+|.+|++++++||+|||..+|+|+|+||+|.
T Consensus 81 ~Yi~~f~~ya~~k~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTV--KIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHHheecCchhee--EeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 9999999999987632 22222333334444444556677788889999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhheeecCCCCCC
Q 042988 165 MPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 165 l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
||++++++.++++..|++||++++|.||.+||++|+.++++|+.+|++||+++.+.
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~ 214 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKI 214 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999988433
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.87 E-value=3.6e-22 Score=149.97 Aligned_cols=87 Identities=30% Similarity=0.514 Sum_probs=84.5
Q ss_pred eehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhhe
Q 042988 132 TVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLYA 211 (255)
Q Consensus 132 ~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~ 211 (255)
+++|.+|.+.++++++||++++++++|+|+++++|+.++++.++||.+|+.||++++|++++++|++|++++.+|+.+|+
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 042988 212 IFYKTTN 218 (255)
Q Consensus 212 ~y~~~~~ 218 (255)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=7.1e-21 Score=142.94 Aligned_cols=86 Identities=30% Similarity=0.682 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHH
Q 042988 10 VVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLI 89 (255)
Q Consensus 10 i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v 89 (255)
++|++|.++++++++||+|++++++|+||+|++|+.|+++.++||.+|+.|| ++.+|+ +++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d~-~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILINDW-PIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCCe-eEEeeHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999 677666 6899999999999999999
Q ss_pred Hhhcccchh
Q 042988 90 FVIFSSWGK 98 (255)
Q Consensus 90 ~~~y~~~~~ 98 (255)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998764
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.43 E-value=1e-13 Score=121.90 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHH
Q 042988 6 LIRTVVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELF 85 (255)
Q Consensus 6 ~~~~i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~ 85 (255)
...+.+|.+|..++++||.||+..+++++|+||++.+|+....+.++++..|+.|| ++.+|.+ |..+|.+|..++..
T Consensus 123 ~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli~D~~-IaipN~iG~~l~~~ 199 (243)
T KOG1623|consen 123 RRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLIKDFF-IAIPNVLGFLLGLI 199 (243)
T ss_pred eeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHhcCeE-EEcccHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999 5776655 78999999999999
Q ss_pred HHHHHhhcccchhh
Q 042988 86 YVLIFVIFSSWGKR 99 (255)
Q Consensus 86 y~~v~~~y~~~~~~ 99 (255)
++.+|++|++++.+
T Consensus 200 QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 200 QLILYFKYPKTTEK 213 (243)
T ss_pred HHHHhhhcCCCccc
Confidence 99999999876543
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=8.1e-12 Score=92.66 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=76.9
Q ss_pred ceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhh
Q 042988 131 TTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLY 210 (255)
Q Consensus 131 ~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~ 210 (255)
...+|++|+.++.++| +||+-+++|+||+++++++++.......++|++||++++|.++.+.|.++.+++.+-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4578999999999988 8999999999999999999999999999999999999999999999999999999988887
Q ss_pred eeecCC
Q 042988 211 AIFYKT 216 (255)
Q Consensus 211 ~~y~~~ 216 (255)
..|.-+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 777544
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=8.1e-10 Score=82.05 Aligned_cols=83 Identities=16% Similarity=0.358 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHH
Q 042988 6 LIRTVVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELF 85 (255)
Q Consensus 6 ~~~~i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~ 85 (255)
...++.|..|.+.+... .+||..++.|+|+++++|+..++.....+++|+.|| ++.+ +.|+...|.++..++..
T Consensus 3 ~~~~viG~ia~ilttf~---flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~-~lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTTFA---FLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIN-DLPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHHHH---HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHc-cCcchhHHHHHHHHHHH
Confidence 34566666666665544 799999999999999999999999999999999999 6775 57789999999999887
Q ss_pred HHHHHhhcc
Q 042988 86 YVLIFVIFS 94 (255)
Q Consensus 86 y~~v~~~y~ 94 (255)
-+....+|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 777666663
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.55 E-value=1.3e-05 Score=70.28 Aligned_cols=194 Identities=13% Similarity=0.038 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHH--------hcccccCCceEEEee----hhhhH
Q 042988 13 IIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFY--------GLPFVHPDSTLVVTI----NGAGA 80 (255)
Q Consensus 13 ~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~Y--------G~~~l~~d~~~v~~~----N~~G~ 80 (255)
.+|.+..++-..+-+||+.+..|+||++++|+..+..-.....+|..| . .. +.++.-.. |-+-.
T Consensus 6 ~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~-~~~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 6 ILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---IT-NEFPLSSPGVTQNDVFF 81 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hh-hccccccCCCcHHHHHH
Confidence 344444455556689999999999999999999999999999999999 3 12 22331111 22222
Q ss_pred HHHHHH-----HHHHhhcccchhhHHHHHHHHHHHHHHHHHH--HhhhhhhccCCccceehhhHHHHHHHHHhHhhHHHH
Q 042988 81 AIELFY-----VLIFVIFSSWGKRRKIFVALVVEVVFMAILI--FVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAPLTVM 153 (255)
Q Consensus 81 ~l~~~y-----~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sPL~~i 153 (255)
.++... ..-+.+|.+..+|............+.+.+. .+.......+.+....++.+...++ ..+-+||+
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is---~ikyiPQi 158 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVT---LVKYFPQA 158 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---HHHHhHHH
Confidence 222111 1112223222122111111011111111111 1111111122333344455555555 44558999
Q ss_pred HHHHhcCCccccchHHHHHHhhhhHHHHHhhhh-cCCceeEechhHHHHHHHHHHhhheee
Q 042988 154 KMVISTKSVKYMPLALAIGNAANGAVWVVYACL-RFDPYVLIPNGLGTLSGILQLTLYAIF 213 (255)
Q Consensus 154 ~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l-~~D~~i~ipN~iG~~l~~~ql~l~~~y 213 (255)
..-.|.|+++.+|.......+..++.-..-... .+|...+.--.+++.+..+-+.-.+.|
T Consensus 159 ~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 159 ATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888887666655552 368877777778887776655444333
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=97.98 E-value=1.9e-05 Score=54.92 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCc
Q 042988 13 IIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDS 69 (255)
Q Consensus 13 ~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~ 69 (255)
.+|.+..++..++.+||+++.+|+|+++++|+..+........+|+.|. ++.+++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 3455555666677999999999999999999999999999999999999 565543
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.96 E-value=2.1e-05 Score=54.72 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=47.8
Q ss_pred ehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCce
Q 042988 133 VVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPY 191 (255)
Q Consensus 133 ~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~ 191 (255)
++|+++.++..+ +.+||+.+.+|+|+++++++.+....+.++++|++|.+..++.+
T Consensus 4 ~~g~i~~~~~~~---~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 4 ILGIISIVLWII---SFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHH---HHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666666644 45899999999999999999999999999999999999987653
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.37 E-value=0.0047 Score=53.33 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceE-EEeehhhhHHHHHHHH
Q 042988 9 TVVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTL-VVTINGAGAAIELFYV 87 (255)
Q Consensus 9 ~i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~-v~~~N~~G~~l~~~y~ 87 (255)
+.+|+.-...++.. -+||+.+|+..||++++|...+..-++.-..-+.|. ..++ +| .-.--.+=.+++.+-+
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g-~pFss~gE~~fLl~Q~vil 104 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSG-YPFSSYGEYPFLLLQAVIL 104 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcC-CCchhHHHHHHHHHHHHHH
Confidence 34444444444444 799999999999999999999999999999999999 3443 33 1111122233343333
Q ss_pred HHHhh-cccchh-hHHHHHHHHHHHHHHHHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhhHHHHHHHHhcCCcccc
Q 042988 88 LIFVI-FSSWGK-RRKIFVALVVEVVFMAILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYM 165 (255)
Q Consensus 88 ~v~~~-y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l 165 (255)
+.+.. |+-... ....+...... . ...+ +......++-+..+...-+.-.+-+.|+-.-.|+|++..+
T Consensus 105 i~~if~f~~~~~~~v~~l~~~~~v-------~-~~~~---sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgql 173 (230)
T KOG3211|consen 105 ILCIFHFSGQTVTVVQFLGYIALV-------V-SVLA---SKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQL 173 (230)
T ss_pred HHHHHHhccceeehhhHHHHHHHH-------H-HHHH---HhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchh
Confidence 33332 331111 11111111110 0 0000 1112222222333322223347788999999999999999
Q ss_pred chHHHHHHhhhhHHHHHhhhhc-CCceeEechhHHHHHHHHHHhhheeecCCCCCC
Q 042988 166 PLALAIGNAANGAVWVVYACLR-FDPYVLIPNGLGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 166 ~~~~~~~~~~~~~lW~~YG~l~-~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
++..+..++-.+.--..|.+.. +|.-+...=++...+..+-.+-.++|+++++++
T Consensus 174 s~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~~~ 229 (230)
T KOG3211|consen 174 SLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAIKA 229 (230)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999876 588777777788877777777777777766543
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.93 E-value=0.014 Score=52.42 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHH
Q 042988 10 VVGIIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLI 89 (255)
Q Consensus 10 i~g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v 89 (255)
.-..+|++.+++-..+-.||+.+..|+|+++++|+.+.+.-.+....=+.|. .+.+. -++...-..=-.++...+.+
T Consensus 8 ~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-~~~~~~~~~yy~~~d~~l~~ 84 (260)
T KOG2913|consen 8 LSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-GSTLKVQAVYYTLADSVLFV 84 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-chhHHHHHHHHHHHHHHHHH
Confidence 3445666666666677899999999999999999999998888888888888 44432 21111111111111111223
Q ss_pred Hhhcccchhh---------HHHH-H---HHH----------------HHHHHHHHHHHhhhhh-h----cc-CC-cccee
Q 042988 90 FVIFSSWGKR---------RKIF-V---ALV----------------VEVVFMAILIFVTLYF-L----HT-TD-DRTTV 133 (255)
Q Consensus 90 ~~~y~~~~~~---------~~~~-~---~~~----------------~~~~~~~~~~~~~~~~-~----~~-~~-~~~~~ 133 (255)
...|.+.+.+ .+.. . ... ....+...+....... . .. .. ...+-
T Consensus 85 q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (260)
T KOG2913|consen 85 QCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDS 164 (260)
T ss_pred HHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcc
Confidence 3333332211 0000 0 000 0000111111111000 0 00 11 22334
Q ss_pred hhh-HHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCcee-EechhH----HHHHHHHHH
Q 042988 134 VGI-IAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYV-LIPNGL----GTLSGILQL 207 (255)
Q Consensus 134 ~G~-~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i-~ipN~i----G~~l~~~ql 207 (255)
+|. +|.....+..++++||+..-.|.|+.+++++.+++...+.+. .|+.- |..+ -.|+.. +..+-+.-.
T Consensus 165 lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~---~y~~s--~~~~~n~~w~~~~~~~~~~D~~~~ 239 (260)
T KOG2913|consen 165 LGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNT---TYILS--SYLVTNLPWLVDSKGTIYLDIFIF 239 (260)
T ss_pred hHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccc---ccccc--cccccCCcccccCCcchhHHHHHH
Confidence 555 444555666789999999999999999999977766555543 45544 1111 123322 334455566
Q ss_pred hhheeecCCC
Q 042988 208 TLYAIFYKTT 217 (255)
Q Consensus 208 ~l~~~y~~~~ 217 (255)
.-+++|+++|
T Consensus 240 ~q~~~~~~~~ 249 (260)
T KOG2913|consen 240 LQFFNYRASK 249 (260)
T ss_pred HHHHHhhccc
Confidence 6677777776
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.87 E-value=0.35 Score=48.37 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHHHhhc
Q 042988 14 IGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLIFVIF 93 (255)
Q Consensus 14 l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y 93 (255)
+|.+..++...--+-|-..-.|+|.. -+|..-...++..+.+=+.|| ++..| .+++.-..+|.++ |++.
T Consensus 13 ~G~~~q~~F~~rf~~QW~~sek~~~s-~~p~~FW~~Sl~g~~~l~~y~--~~~~~-~~~~~~q~~~~~i-------y~rN 81 (608)
T PRK01021 13 LGLFANLFFGSAFCIQWFLSKKRKYS-YVPKIFWILSSIGAVLMICHG--FIQSQ-FPIALLHSFNLII-------YFRN 81 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-cCchHHHHHHHHHHHHHHHHH--HHhcC-CcEEEecccceEE-------Eeeh
Confidence 45555554444445566555555542 235555667889999999999 56644 4466656665544 3332
Q ss_pred ----ccchhhHHHH-HHHHHHHHHHHH-HHHhhhhhhcc----------C--Cccc---eehhhHHHHHHHHHhHhhHHH
Q 042988 94 ----SSWGKRRKIF-VALVVEVVFMAI-LIFVTLYFLHT----------T--DDRT---TVVGIIAVVFNIVMYAAPLTV 152 (255)
Q Consensus 94 ----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~----------~--~~~~---~~~G~~~~~~si~~~~sPL~~ 152 (255)
...+.-.|.. .++..+.++.++ +....+..... . +... ..+|++|-++-..-|. -|
T Consensus 82 l~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf~---~Q 158 (608)
T PRK01021 82 LNIASSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRFF---IQ 158 (608)
T ss_pred hhhcccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHHH---HH
Confidence 1111111111 111111111110 11111111110 1 1222 3456666655544442 12
Q ss_pred HHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHh
Q 042988 153 MKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLT 208 (255)
Q Consensus 153 i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~ 208 (255)
-. .-+++.-+.+|..-...+++.+++=++|++.++|+-.++....|.+..+--+.
T Consensus 159 w~-~se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~ 213 (608)
T PRK01021 159 WF-YLEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLR 213 (608)
T ss_pred HH-HHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHH
Confidence 11 11345566789999999999999999999999999999999999987666643
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.49 E-value=0.022 Score=50.00 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=43.2
Q ss_pred eehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHh
Q 042988 132 TVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVY 183 (255)
Q Consensus 132 ~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~Y 183 (255)
+.+|+...+.....+ +||+.+..|+||++++|+......+++...|.+|
T Consensus 5 ~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 456777777776655 8999999999999999999999999999999999
No 14
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.67 E-value=0.0068 Score=48.02 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=56.2
Q ss_pred cCCccccchHHHHHHhhhhHHHHHhhhhc--CCceeEechhHHHHHHHHHHhhheeecCCCCCCC
Q 042988 159 TKSVKYMPLALAIGNAANGAVWVVYACLR--FDPYVLIPNGLGTLSGILQLTLYAIFYKTTNWDG 221 (255)
Q Consensus 159 tks~~~l~~~~~~~~~~~~~lW~~YG~l~--~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~~ 221 (255)
+|..|.++..|..+.++.+++|.-|.+.+ +|+.++..|+.-...+..|+.=++.|...+++..
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 103 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEA 103 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 68999999999999999999999999988 6999999999999999999998888877655444
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.45 E-value=0.077 Score=31.73 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.0
Q ss_pred hcHHHHHHHHHhccCCcccchhHHHHH
Q 042988 25 SPIPTMAAIVRQKSVENFKADPYIATV 51 (255)
Q Consensus 25 Splp~i~~i~k~kstg~~s~~p~~~~~ 51 (255)
+-+||+.+.+|+|+++++|+..+...+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 568999999999999999988776544
No 16
>PHA02246 hypothetical protein
Probab=93.04 E-value=4.6 Score=33.66 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCC--ceEEEeehhhhHHHHHHHHHHH
Q 042988 13 IIGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPD--STLVVTINGAGAAIELFYVLIF 90 (255)
Q Consensus 13 ~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d--~~~v~~~N~~G~~l~~~y~~v~ 90 (255)
.+....+++......|+.+.+.|.|++.++|-+ |+-......+-..|-+ +..| .|.+ .+=.....++..++.+-
T Consensus 7 ~~s~~yailit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNl--L~T~~~~fqi-~svg~nl~lgivcLlv~ 82 (192)
T PHA02246 7 YLSILYAILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNL--LLTDASVFQI-VSVGLNLTLGIVCLLVA 82 (192)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHH--HhcCCceEEE-eeeehhhhhhhhheeee
Confidence 344555666667789999999999999998754 5666666778888884 4433 3543 44445555666555332
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHH
Q 042988 91 VIFSSWGKRRKIFVALVVEVVFMAILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALA 170 (255)
Q Consensus 91 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~ 170 (255)
- |+ ||......+... +.++ ++...+.....+. +|...-+..| .+|+.+-.|||++|+.++...
T Consensus 83 ~-~r---kkd~f~~~fiii---fSLl----lfll~~~~evtQt---Vat~tIiLaY---i~QIIqfyKTK~SEg~n~~l~ 145 (192)
T PHA02246 83 S-YR---KKDYFSIPFIIV---FSLL----LFLLSDFTALTQT---VATITIILAY---VTQITTFYKTKSAEGTNRFLF 145 (192)
T ss_pred h-hh---ccccccchHHHH---HHHH----HHHHhhhHHHHHH---HHHHHHHHHH---HHHHHHHhhhcccCCCChhHH
Confidence 2 21 121111111111 1111 1111111112222 2333333334 789999999999999998776
Q ss_pred HHHhhhhHHHHHhhhhcC--CceeEec---hhHHHHHHHHH
Q 042988 171 IGNAANGAVWVVYACLRF--DPYVLIP---NGLGTLSGILQ 206 (255)
Q Consensus 171 ~~~~~~~~lW~~YG~l~~--D~~i~ip---N~iG~~l~~~q 206 (255)
+.-.+ ++.-+.....+. -.+|++. |.+=.+.+-.|
T Consensus 146 lii~~-GL~~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 146 LIIGL-GLASLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred HHHHH-HHHHHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 54333 233333444443 3455555 44444444444
No 17
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.025 Score=43.90 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=53.2
Q ss_pred cCCccccchHHHHHHhhhhHHHHHhhhhc--CCceeEechhHHHHHHHHHHhhheeecCCC
Q 042988 159 TKSVKYMPLALAIGNAANGAVWVVYACLR--FDPYVLIPNGLGTLSGILQLTLYAIFYKTT 217 (255)
Q Consensus 159 tks~~~l~~~~~~~~~~~~~lW~~YG~l~--~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~ 217 (255)
.|..|.+|....++-+..++.|.-|.+.+ +|+.+.-.|+.=.+-++.|+.=++.|....
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999988 699999999999999999999999995443
No 18
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.84 E-value=0.16 Score=30.29 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhcCCccccchHHHHHHhhh
Q 042988 148 APLTVMKMVISTKSVKYMPLALAIGNAAN 176 (255)
Q Consensus 148 sPL~~i~~vi~tks~~~l~~~~~~~~~~~ 176 (255)
+-+||+.+.+|+|+++++|+.+.+..+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~G 30 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLLG 30 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHhc
Confidence 45799999999999999998887765543
No 19
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=90.98 E-value=0.84 Score=38.14 Aligned_cols=125 Identities=13% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 042988 47 YIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLIFVIFSSWGKRRKIFVALVVEVVFMAILIFVTLYFLHT 126 (255)
Q Consensus 47 ~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (255)
.......|.++...- .+.+. .+-+.++.++..-..+..++.. +. .. ..+. .+........
T Consensus 29 ~~~~~~~~~~~~ihf--~LLGa-----~taa~~~~ls~~R~~~s~~~~~---~~-v~-~~Fi-----~~~~~~~~~~--- 88 (163)
T PF10688_consen 29 LLLQAISCLLFAIHF--ALLGA-----WTAALSMLLSAVRNFVSIRTRS---RW-VM-AVFI-----ALSLVMGLFT--- 88 (163)
T ss_pred HHHHHHHHHHHHHHH--HHhCh-----HHHHHHHHHHHHHHHHHHHhCC---HH-HH-HHHH-----HHHHHHHHHH---
Confidence 345566666666665 34443 2445666777776666655543 11 11 1111 1111111221
Q ss_pred CCccceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHH
Q 042988 127 TDDRTTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQ 206 (255)
Q Consensus 127 ~~~~~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~q 206 (255)
-+...+.++.+|+++...... .++.+| |=...++++.+|.+|++..+++.-.+-|...++.....
T Consensus 89 ~~g~~~~l~~~as~~~t~a~f-----~~~~~~----------mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 89 WQGWIELLPYAASVLGTIALF-----MLDGIK----------MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-----hcCchh----------HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 234445666666655544321 122222 22457899999999999999998888888777766655
No 20
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=0.17 Score=39.45 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=50.7
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHHHhhcc
Q 042988 36 QKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLIFVIFS 94 (255)
Q Consensus 36 ~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~ 94 (255)
.|..+.+|.......+...++|..|.+ .+.+.++.++.+|.+=++.+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999996 5566666689999999999999998888884
No 21
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=89.81 E-value=0.17 Score=40.13 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=51.7
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHHHhhccc
Q 042988 36 QKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLIFVIFSS 95 (255)
Q Consensus 36 ~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~ 95 (255)
+|..+.+|..+-.+.++.+.+|+.|++ .+.+.++.++.+|.+-...+.+++.=++.|..
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999996 56666677899999999999999987777743
No 22
>PHA02246 hypothetical protein
Probab=85.25 E-value=6.8 Score=32.69 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHH
Q 042988 16 NVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAI 82 (255)
Q Consensus 16 ~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l 82 (255)
+++++.+.++.+||+.+-+|+|+.++.|...++.....-.+=..=- .+++-..-++.+-...+++
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m--~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSM--VLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHH--hhhCCcceeeHHHHHHHHH
Confidence 4556666778999999999999999999988776655444333222 2444444456666655554
No 23
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=82.43 E-value=34 Score=33.76 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=109.8
Q ss_pred HHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHH--------
Q 042988 17 VISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVL-------- 88 (255)
Q Consensus 17 i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~-------- 88 (255)
+-++.=+++-=.++.-+.++||.+++|.-..+..++++++=+.|= +=.+..+.|.++-.+|.++.++=+-
T Consensus 327 lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl--lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id 404 (592)
T KOG2489|consen 327 LHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL--LDNETSFMVLVSVGVGLLIELWKIKKAMKVEID 404 (592)
T ss_pred HHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee--ecCCccEEEEEeccceeeeeeeecceEEEEEEe
Confidence 334455566667788899999999999999999999999988887 2333467788999999988764321
Q ss_pred ----HH-----------hhcccchhh---HHHHHHHHHHHH-HHHHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhh
Q 042988 89 ----IF-----------VIFSSWGKR---RKIFVALVVEVV-FMAILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAP 149 (255)
Q Consensus 89 ----v~-----------~~y~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sP 149 (255)
+. -.|+.++.+ ...++.++..+. ++..++++.+...+...-..-++-.+...+-.+-|.--
T Consensus 405 ~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M 484 (592)
T KOG2489|consen 405 WSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFM 484 (592)
T ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHh
Confidence 11 112211111 123344444333 23334445554444344555566666666666667777
Q ss_pred HHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhh
Q 042988 150 LTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYAC 185 (255)
Q Consensus 150 L~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~ 185 (255)
+||+--=.|-||...+|-.+..-=++|.+.==++.+
T Consensus 485 ~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAF 520 (592)
T KOG2489|consen 485 LPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAF 520 (592)
T ss_pred ChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 899888889999999999998877788765444443
No 24
>COG3952 Predicted membrane protein [Function unknown]
Probab=77.66 E-value=8.7 Score=29.89 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=58.1
Q ss_pred ehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhhee
Q 042988 133 VVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLYAI 212 (255)
Q Consensus 133 ~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~~ 212 (255)
.+|..|..+-..-|. -| --..+.++.+.+|.+---++++.+.+-+.|.+-++|..-++-|..|+..++.-+-+...
T Consensus 28 LiG~~g~~lFt~Rf~---VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 28 LIGFSGQLLFTGRFV---VQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred HHHHHHHHHHHHHHH---HH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHH
Confidence 445555544443342 11 11345788889999999999999999999999999999889999999887777655444
Q ss_pred ecCCC
Q 042988 213 FYKTT 217 (255)
Q Consensus 213 y~~~~ 217 (255)
-++.|
T Consensus 104 er~~~ 108 (113)
T COG3952 104 ERRWK 108 (113)
T ss_pred Hhccc
Confidence 33333
No 25
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=77.64 E-value=7.9 Score=35.65 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhccCCcccch
Q 042988 12 GIIGNVISLGLFLSPIPTMAAIVRQKSVENFKAD 45 (255)
Q Consensus 12 g~l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~ 45 (255)
.++|.+.-+.--.|..|++..-.|+||+.++++-
T Consensus 125 ~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfD 158 (372)
T KOG3145|consen 125 QIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFD 158 (372)
T ss_pred hhhheeEEEEEeeeechHHHhhhhhcceeccccc
Confidence 3344333333334668999999999999998864
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=76.99 E-value=2.3 Score=30.86 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=37.1
Q ss_pred cCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHH
Q 042988 159 TKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSG 203 (255)
Q Consensus 159 tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~ 203 (255)
++.-+.+|..--..+++.+++=++||+.++|+.+++....|.+..
T Consensus 22 k~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 22 KAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 444567788888999999999999999999998887777777643
No 27
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=74.60 E-value=66 Score=30.03 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHhcCCccccchHHHHHHhhhhHHH-HHhhhhcCCceeEechhHHHHHHH
Q 042988 154 KMVISTKSVKYMPLALAIGNAANGAVW-VVYACLRFDPYVLIPNGLGTLSGI 204 (255)
Q Consensus 154 ~~vi~tks~~~l~~~~~~~~~~~~~lW-~~YG~l~~D~~i~ipN~iG~~l~~ 204 (255)
.-++|.-++..++..+ +.+-.| ++.|+...+...--.-.+|+++-+
T Consensus 251 p~~l~~ssAt~~nLsL-----LTsd~~ali~~i~~f~~~~~~ly~~af~lIi 297 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSL-----LTSDFYALIIDIFFFGYKFSWLYILAFALII 297 (334)
T ss_pred HHHHHhCccceeehHH-----HHhhHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 3456666665555544 444445 245554444333222345554333
No 28
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=72.41 E-value=7.6 Score=34.99 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=55.3
Q ss_pred ceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCce-eEechhHHHHHHHHHHhh
Q 042988 131 TTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPY-VLIPNGLGTLSGILQLTL 209 (255)
Q Consensus 131 ~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~-i~ipN~iG~~l~~~ql~l 209 (255)
..+.|.+..+.....+ .||+.+..|+|+.+++|+...+...+..+.=+.|-.+.+-.. ..+.-..=.+...++++-
T Consensus 9 s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~~~~~~~~yy~~~d~~l~~q 85 (260)
T KOG2913|consen 9 STILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGSTLKVQAVYYTLADSVLFVQ 85 (260)
T ss_pred HHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 799999999999999999999988888888888877665221 111222223334555666
Q ss_pred heeecCCCC
Q 042988 210 YAIFYKTTN 218 (255)
Q Consensus 210 ~~~y~~~~~ 218 (255)
+..|+...+
T Consensus 86 ~~yy~~~~~ 94 (260)
T KOG2913|consen 86 CLYYGNIYP 94 (260)
T ss_pred HHhcchhcc
Confidence 666766554
No 29
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=71.29 E-value=9.7 Score=34.21 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=29.6
Q ss_pred hhhhHHHHHhhhhc---CCceeEechhHHHHHHHHHHhhheeecCCC
Q 042988 174 AANGAVWVVYACLR---FDPYVLIPNGLGTLSGILQLTLYAIFYKTT 217 (255)
Q Consensus 174 ~~~~~lW~~YG~l~---~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~ 217 (255)
.+.+-.|.-||+.- ++...-.-|.+|+.+.++-..+|..-.++.
T Consensus 93 ~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 93 CLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34444555566653 444555669999999999988887765544
No 30
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=65.08 E-value=14 Score=28.02 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhheeecCCCCCCCCcc
Q 042988 171 IGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLYAIFYKTTNWDGDDD 224 (255)
Q Consensus 171 ~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~~~~~ 224 (255)
+...+..++=.++..+.+|.-+..--..|.+.+..-..++=.+.++.++..|++
T Consensus 39 Is~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~ 92 (93)
T PF06946_consen 39 ISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDD 92 (93)
T ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCC
Confidence 334444455556666676665555456788888888888777777665555543
No 31
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=64.63 E-value=43 Score=32.99 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=15.0
Q ss_pred echhHHHHHHHHHHhhheeecCCCCCC
Q 042988 194 IPNGLGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 194 ipN~iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
.|..+.+++.+..+++.+.+-++..+.
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhheeecccC
Confidence 456666666666666655554444333
No 32
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=54.60 E-value=29 Score=30.41 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=51.5
Q ss_pred hhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHHHHHHhhc
Q 042988 24 LSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFYVLIFVIF 93 (255)
Q Consensus 24 lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y 93 (255)
.+-++|+..-.|+|++|..+.......+..|..=..|. ...++++.+...-++...+...-..-.++|
T Consensus 155 ~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y 222 (230)
T KOG3211|consen 155 VSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRY 222 (230)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999 677766655555555555544333333333
No 33
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.31 E-value=1.1e+02 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhc-CCceeE
Q 042988 153 MKMVISTKSVKYMPLALAIGNAANGAVWVVYACLR-FDPYVL 193 (255)
Q Consensus 153 i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~-~D~~i~ 193 (255)
...+.|.|.. ...++..+..+-=++|+++. .|.-+.
T Consensus 370 ~~~vl~~~k~-----~~~~~~~L~~LY~~Ly~lLq~EdyALL 406 (430)
T PF06123_consen 370 LSSVLKSWKR-----GLIFAGLLAALYGFLYVLLQSEDYALL 406 (430)
T ss_pred HHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456665432 44455566666667777777 466653
No 34
>PRK11715 inner membrane protein; Provisional
Probab=49.91 E-value=1.3e+02 Score=29.12 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhc-CCceeE
Q 042988 134 VGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLR-FDPYVL 193 (255)
Q Consensus 134 ~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~-~D~~i~ 193 (255)
+.-.+++..+..| ...+.|.+.. ...++..+..+-=++|+++. .|.-+.
T Consensus 363 iAa~a~v~li~~Y------~~~vl~~~k~-----g~~~~~~L~~LYg~Ly~lLq~EDyALL 412 (436)
T PRK11715 363 IAALACVLLIGFY------LSAVLRSWKR-----GLLFAAALAALYGVLYGLLQSEDYALL 412 (436)
T ss_pred HHHHHHHHHHHHH------HHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555556 3445555432 44455666677777788877 476663
No 35
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=49.83 E-value=30 Score=33.35 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhccccc-CCceEEEeehhhhHHHHHHH
Q 042988 14 IGNVISLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVH-PDSTLVVTINGAGAAIELFY 86 (255)
Q Consensus 14 l~~i~ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~-~d~~~v~~~N~~G~~l~~~y 86 (255)
+..+-++.=+++-=.++.-++++||.+++|....+.-++..++=+.|= +. +..+.|.+++++|++++++=
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhhee
Confidence 344456666788889999999999999999999988888888877776 33 34677899999999998753
No 36
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=49.31 E-value=2.7e+02 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 042988 3 ETGLIRTVVGIIGNVISLGLFLSPIPTMAAIV 34 (255)
Q Consensus 3 ~~~~~~~i~g~l~~i~ti~~~lSplp~i~~i~ 34 (255)
+.+++....|.+|..+.+++.+|+.-.-.-..
T Consensus 174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999988888766555444
No 37
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=48.92 E-value=1.2e+02 Score=28.24 Aligned_cols=44 Identities=9% Similarity=-0.094 Sum_probs=28.3
Q ss_pred HHHhhhhcCCceeEechhHHHHHHHHHHhhheeecCCCCCCCCc
Q 042988 180 WVVYACLRFDPYVLIPNGLGTLSGILQLTLYAIFYKTTNWDGDD 223 (255)
Q Consensus 180 W~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~~~~ 223 (255)
|--+....+-...+..|.+|+.++..-...+.-|++.+-.+.++
T Consensus 256 ~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~~~~~~~ 299 (325)
T TIGR00341 256 ISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYRYYKKKV 299 (325)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHH
Confidence 33333344445677889999999887777666777665444333
No 38
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=47.97 E-value=18 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhheeecCCCCC
Q 042988 198 LGTLSGILQLTLYAIFYKTTNW 219 (255)
Q Consensus 198 iG~~l~~~ql~l~~~y~~~~~~ 219 (255)
++++..++-+++|-+|.+++..
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 5666677788899999877643
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.24 E-value=2.3e+02 Score=27.58 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=7.1
Q ss_pred hhhHHHHHhhhhc
Q 042988 175 ANGAVWVVYACLR 187 (255)
Q Consensus 175 ~~~~lW~~YG~l~ 187 (255)
.-+++|.++++..
T Consensus 410 ~~~~~~~~~~~v~ 422 (507)
T TIGR00910 410 GIGFLLSIFAFFI 422 (507)
T ss_pred HHHHHHHHHHHhe
Confidence 3345566666553
No 40
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=1.9e+02 Score=24.56 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=40.7
Q ss_pred ehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhhee
Q 042988 133 VVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLYAI 212 (255)
Q Consensus 133 ~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~~~ 212 (255)
.+|-+..+.+.+....|..|+++....+ .+| .-..++.+++=++|.-+.-+..+ .-+++++.|..-..+
T Consensus 82 TlGnll~i~sf~fLmGP~~ql~~m~~p~---Rl~---~T~~~l~~~~~Tly~al~~ks~i-----Ltllf~ilq~laliw 150 (175)
T KOG2887|consen 82 TLGNLLAIGSFAFLMGPVSQLKHMFSPE---RLP---ATLSYLATMVLTLYVALWLKSKI-----LTLLFCILQVLALIW 150 (175)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcChh---HHH---HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 4677777777777889999999977432 222 23344555555566555533333 334445555554444
Q ss_pred e
Q 042988 213 F 213 (255)
Q Consensus 213 y 213 (255)
|
T Consensus 151 Y 151 (175)
T KOG2887|consen 151 Y 151 (175)
T ss_pred H
Confidence 4
No 41
>PF15102 TMEM154: TMEM154 protein family
Probab=42.03 E-value=32 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=19.7
Q ss_pred eeEechhHHHHHHHHHHhhheeecCCCCCC
Q 042988 191 YVLIPNGLGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 191 ~i~ipN~iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
.|++|-++++++-+.-+.+..+|+|++.++
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 456787777666666677777776665544
No 42
>PRK11387 S-methylmethionine transporter; Provisional
Probab=39.63 E-value=97 Score=29.69 Aligned_cols=32 Identities=9% Similarity=-0.111 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHhhheeecCCCCCCCCccccc
Q 042988 196 NGLGTLSGILQLTLYAIFYKTTNWDGDDDENR 227 (255)
Q Consensus 196 N~iG~~l~~~ql~l~~~y~~~~~~~~~~~~~~ 227 (255)
..+|..+-..-+..|..+++++++-.||..|-
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T PRK11387 438 LWCGIPFVALCYGAYYLTQRLKRNMTQEARHV 469 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHhhhhc
Confidence 34566555666667777777666666665553
No 43
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=39.47 E-value=2.3e+02 Score=28.34 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=17.7
Q ss_pred HHHhhhhc------CCceeEechhHHHHHHHHHHhhhee
Q 042988 180 WVVYACLR------FDPYVLIPNGLGTLSGILQLTLYAI 212 (255)
Q Consensus 180 W~~YG~l~------~D~~i~ipN~iG~~l~~~ql~l~~~ 212 (255)
|++|+.+- .+|..+++ +|++...++..++..
T Consensus 397 ~~l~~~~~~~~g~~~~~~~~~~--iGi~~~~iYy~vF~f 433 (548)
T TIGR02003 397 LITRTPMALKAGLGMDLINFVI--VSILFAGIMFFIADF 433 (548)
T ss_pred HHHhcccccccccccCchhHHH--HHHHHHHHHHHHHHH
Confidence 66666522 35555554 677766666555443
No 44
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=39.36 E-value=2.6e+02 Score=24.41 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=13.2
Q ss_pred ceehhhHHHHHHHHHhHhhHHH
Q 042988 131 TTVVGIIAVVFNIVMYAAPLTV 152 (255)
Q Consensus 131 ~~~~G~~~~~~si~~~~sPL~~ 152 (255)
...+|+.+.++..+.++..+..
T Consensus 97 HSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 97 HSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777666655555433
No 45
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=38.84 E-value=4.3e+02 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.491 Sum_probs=31.3
Q ss_pred HhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCC
Q 042988 23 FLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPD 68 (255)
Q Consensus 23 ~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d 68 (255)
+..|+..+-+.+-.=+-++++|.|+++.+ .++.|| ++.+|
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFG--mM~gD 364 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFG--MMLGD 364 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHH--HHHHh
Confidence 35678888888888888999999988765 478888 67767
No 46
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=38.36 E-value=60 Score=23.49 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHhhcHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeehhhhHHH
Q 042988 19 SLGLFLSPIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAI 82 (255)
Q Consensus 19 ti~~~lSplp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l 82 (255)
.++...--+-|-....|+|. ..+|..-....+..+.+=+.|| +..+|. ..+....+|.+.
T Consensus 6 q~lF~~Rf~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~--i~r~Dp-V~ilgq~~gl~i 65 (72)
T PF07578_consen 6 QLLFSSRFIVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYA--IIRKDP-VFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHH--HHHcCh-HHHHHHhcChHH
Confidence 33333444566666666655 3456667778899999999999 677663 334455555444
No 47
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=37.44 E-value=44 Score=24.62 Aligned_cols=23 Identities=13% Similarity=-0.242 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHhhhhcCCce
Q 042988 169 LAIGNAANGAVWVVYACLRFDPY 191 (255)
Q Consensus 169 ~~~~~~~~~~lW~~YG~l~~D~~ 191 (255)
.....++..+.|...+...+|..
T Consensus 10 tl~l~l~yf~~W~~~ay~~~~~~ 32 (80)
T PF06196_consen 10 TLGLTLIYFAWWYGFAYGLGNGD 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Confidence 34556678888887777765443
No 48
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=37.07 E-value=2.1e+02 Score=25.51 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=5.4
Q ss_pred ccccccC
Q 042988 249 VQLVDVA 255 (255)
Q Consensus 249 ~~~~~~~ 255 (255)
-+++|+.
T Consensus 174 LGLGDiv 180 (249)
T smart00730 174 LGLGDIV 180 (249)
T ss_pred ecCCCee
Confidence 7888873
No 49
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=35.81 E-value=5.1e+02 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=13.3
Q ss_pred cHHHHHHHHHhccCCcc
Q 042988 26 PIPTMAAIVRQKSVENF 42 (255)
Q Consensus 26 plp~i~~i~k~kstg~~ 42 (255)
-+|.+.....++..+.-
T Consensus 231 llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 231 LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHhCCCccCC
Confidence 47888888888877775
No 50
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=35.56 E-value=3.5e+02 Score=27.73 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHhHhhHHHHHHHHhcCCccccchHHHHHHhhh----------hHHHHHhhhhc---CCceeEechhHHHHHHHHHHhhh
Q 042988 144 VMYAAPLTVMKMVISTKSVKYMPLALAIGNAAN----------GAVWVVYACLR---FDPYVLIPNGLGTLSGILQLTLY 210 (255)
Q Consensus 144 ~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~----------~~lW~~YG~l~---~D~~i~ipN~iG~~l~~~ql~l~ 210 (255)
++|.||+.-+-+++=+. +++ .++.+++ .+=|++|+.+. .+|+.++ .+|++...++..++
T Consensus 284 FlFvAP~Ly~vHa~l~G----~s~--~~~~~l~v~ig~~fs~GliD~~~~~~~~~~~~~~~~~~--~vGi~~~~iYy~vF 355 (648)
T PRK10255 284 FMFLAPLLYLLHALLTG----ISL--FVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLL--VMGVVFFAIYFVLF 355 (648)
T ss_pred HHHHhHHHHHHHHHHHH----HHH--HHHHHhcceEecccCCceeHHHHhccccccccCceeeh--hHHHHHHHHHHHHH
Confidence 46888887776655543 111 1222221 13466677654 4555443 35666555555444
No 51
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.31 E-value=2.8e+02 Score=23.58 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHhhhhHHHHHhhh----hcCCceeEechhHHHHHHHHHHhhheeecCCC
Q 042988 170 AIGNAANGAVWVVYAC----LRFDPYVLIPNGLGTLSGILQLTLYAIFYKTT 217 (255)
Q Consensus 170 ~~~~~~~~~lW~~YG~----l~~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~ 217 (255)
.+...+..++|+.--. +-.-....+|+.+.++++++-+.+++...+|-
T Consensus 150 ~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 150 ILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667753222 22344567899999999999999988776654
No 52
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=50 Score=26.33 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=52.9
Q ss_pred hHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHHhhhhc--CCceeEechhHHHHHHHHHHhhheee
Q 042988 146 YAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVVYACLR--FDPYVLIPNGLGTLSGILQLTLYAIF 213 (255)
Q Consensus 146 ~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l~--~D~~i~ipN~iG~~l~~~ql~l~~~y 213 (255)
++-|+..+.+ -+|+-+-++-+|..+.++=+....-|.+.. +|+.++.-.........+|..=|+.|
T Consensus 36 wGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~ 103 (132)
T KOG1590|consen 36 WGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNY 103 (132)
T ss_pred ccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778887777 568889999999999888888888888877 58888877777777888887766665
No 53
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=33.33 E-value=31 Score=28.65 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcccccCCceEEEeehhhhHHHHHHH
Q 042988 48 IATVLNCFVWTFYGLPFVHPDSTLVVTINGAGAAIELFY 86 (255)
Q Consensus 48 ~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~G~~l~~~y 86 (255)
...++++.+|+.|+ ++.+++. ....|........+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS~~-g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGSWG-GTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcCHH-HHHHHHHHHHHHHHH
Confidence 45889999999999 6776544 456666555554433
No 54
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=31.68 E-value=6.6e+02 Score=26.78 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhccCCcccchhHHHHHHHHHHHHHHhcccccCCc-eEEEeehhhhHH
Q 042988 26 PIPTMAAIVRQKSVENFKADPYIATVLNCFVWTFYGLPFVHPDS-TLVVTINGAGAA 81 (255)
Q Consensus 26 plp~i~~i~k~kstg~~s~~p~~~~~~n~~~W~~YG~~~l~~d~-~~v~~~N~~G~~ 81 (255)
-+|+.++-.|- ...-..+.|++|..|- -+.... +...++-.++++
T Consensus 73 ~Fpq~r~RfR~---------~L~YI~~~~l~W~lYf--av~~rs~fi~~~~~slc~l 118 (1318)
T KOG3618|consen 73 CFPQTRRRFRY---------ALFYIGFACLLWSLYF--AVHMRSRFIVMVAPSLCFL 118 (1318)
T ss_pred hCHHHHHHHHH---------HHHHHHHHHHHHHHHh--eeccCceeeeehHHHHHHH
Confidence 46666665543 2333456789999998 344333 444444444443
No 55
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=31.26 E-value=3.1e+02 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=17.0
Q ss_pred HHHHHhhhhc--CCceeEechhHHHHHHHHHHhhhee
Q 042988 178 AVWVVYACLR--FDPYVLIPNGLGTLSGILQLTLYAI 212 (255)
Q Consensus 178 ~lW~~YG~l~--~D~~i~ipN~iG~~l~~~ql~l~~~ 212 (255)
+=|++|+... .+|+.++ .+|++...++..++..
T Consensus 336 id~~~~~~~~~~~~~~~~~--~iG~~~~~iyy~~F~~ 370 (476)
T TIGR01998 336 IDYVLSFNNPTANQPLMLL--VQGLVFFALYYVVFRF 370 (476)
T ss_pred hHHHHhCcccccccchHHH--HHHHHHHHHHHHHHHH
Confidence 3455666544 4554443 3566655555554443
No 56
>PRK10591 hypothetical protein; Provisional
Probab=31.08 E-value=96 Score=23.53 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=13.3
Q ss_pred echhHHHHHHHHHHhhheeecCCCCCC
Q 042988 194 IPNGLGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 194 ipN~iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
+|-.+-++--++|..-...+.+++.++
T Consensus 57 iPAav~ivWR~a~~lap~l~~~~~~~~ 83 (92)
T PRK10591 57 LPAAVVIIWRVAKGLAPQLMNRPPQYS 83 (92)
T ss_pred hHHHHHHHHHHHHHhcHHhccCCchhh
Confidence 344444444555555555555544433
No 57
>PHA03049 IMV membrane protein; Provisional
Probab=30.50 E-value=50 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhheeecCCCCCC
Q 042988 198 LGTLSGILQLTLYAIFYKTTNWD 220 (255)
Q Consensus 198 iG~~l~~~ql~l~~~y~~~~~~~ 220 (255)
++++..++-+++|-+|.+++...
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccC
Confidence 45566677788999998876444
No 58
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=29.76 E-value=3.7e+02 Score=23.26 Aligned_cols=6 Identities=17% Similarity=-0.048 Sum_probs=2.3
Q ss_pred Hhhhhc
Q 042988 182 VYACLR 187 (255)
Q Consensus 182 ~YG~l~ 187 (255)
+-|.+.
T Consensus 140 l~~~l~ 145 (352)
T PF07690_consen 140 LGGFLI 145 (352)
T ss_dssp HHHHCC
T ss_pred hhhhhh
Confidence 334333
No 59
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=28.87 E-value=4e+02 Score=26.54 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHhHhhHHHHHHHHhcCCccccchHHHHHHh------hhhHHHHHhhhhc---CCceeEechhHHHHHHHHHHhh
Q 042988 144 VMYAAPLTVMKMVISTKSVKYMPLALAIGNA------ANGAVWVVYACLR---FDPYVLIPNGLGTLSGILQLTL 209 (255)
Q Consensus 144 ~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~------~~~~lW~~YG~l~---~D~~i~ipN~iG~~l~~~ql~l 209 (255)
++|.||+.-+-+++=+.-+.- .+.+... -+-+=|++||.+. .+|+.++ .+|++...++..+
T Consensus 345 FlFvaP~L~~vha~l~g~~~~---~~~~l~v~~g~~~~g~id~i~~~~~~~~~~~~~~~~--~~g~~~~~iyy~v 414 (530)
T PRK10110 345 FLFVAPVLYVIHALLTGLGFT---VMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVP--VVAAIWFVVYYVI 414 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---HHHHhCceeccCCCchHHHHHhccccccccCchhHH--HHHHHHHHHHHHH
Confidence 457788776666554431111 1111100 1125577888755 4555543 4666655555443
No 60
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=28.33 E-value=1e+02 Score=23.56 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=11.8
Q ss_pred echhHHHHHHHHHHhhheeecCC
Q 042988 194 IPNGLGTLSGILQLTLYAIFYKT 216 (255)
Q Consensus 194 ipN~iG~~l~~~ql~l~~~y~~~ 216 (255)
+|-.+-++-.++|..-...+.++
T Consensus 57 lPAav~ivWR~a~~lap~l~~~~ 79 (96)
T PF07214_consen 57 LPAAVNIVWRVAKGLAPLLIDRP 79 (96)
T ss_pred HHHHHHHHHHHHHHhchHhhcCC
Confidence 44444555555665555555443
No 61
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=27.32 E-value=4.6e+02 Score=26.00 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHhHhhHHHHHHHHhcCCccccchHHHHHHhh---------hhHHHHHhhhhc---CCceeEechhHHHHHHHHHH
Q 042988 144 VMYAAPLTVMKMVISTKSVKYMPLALAIGNAA---------NGAVWVVYACLR---FDPYVLIPNGLGTLSGILQL 207 (255)
Q Consensus 144 ~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~---------~~~lW~~YG~l~---~D~~i~ipN~iG~~l~~~ql 207 (255)
++|+||+.-+-+++=+. + ...++..+ +-+=+++||.+. .+|+.++ .+|++...++.
T Consensus 336 FlFvaP~Ly~vha~l~G----~--~~~~~~~~~v~ig~~s~glid~~~~~~~~~~~~~~~~~~--~vGi~~~~iyy 403 (517)
T TIGR02004 336 FLFVAPLLYLVHAILTG----L--GFMVMALLGVVIGNTDGNLIDFLVFGVLQGTYTKWYLVP--IVAAIWFVVYY 403 (517)
T ss_pred HHHHhHHHHHHHHHHHH----H--HHHHHHHhCceeecCCCchHHHHHhccccccccCchhhH--HHHHHHHHHHH
Confidence 45788877766655433 1 11111112 124577777755 4555544 46666555554
No 62
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=26.35 E-value=2.7e+02 Score=24.50 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=40.3
Q ss_pred cCCccceehhhHHHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhh-hHHHH
Q 042988 126 TTDDRTTVVGIIAVVFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAAN-GAVWV 181 (255)
Q Consensus 126 ~~~~~~~~~G~~~~~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~-~~lW~ 181 (255)
+.+..++++|..|.+.|..|-+-.=-..|+++-+.+-.+.+.-|+...++| |+.|+
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 456777888998888887776654455677888888877777777777776 44443
No 63
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=26.25 E-value=6.8e+02 Score=25.20 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHHHH
Q 042988 140 VFNIVMYAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVWVV 182 (255)
Q Consensus 140 ~~si~~~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW~~ 182 (255)
+...++|.. ..-+.|=++.|.+.....+...+..+.|..
T Consensus 461 i~n~~lY~~----fYiimKi~~~E~i~~~~~~~~~~~~~~W~~ 499 (570)
T PF13965_consen 461 IGNLLLYLF----FYIIMKIRHREKILLKPIIYLVLAFVSWGF 499 (570)
T ss_pred HHHHHHHHH----HHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Confidence 456666643 233334456677777777777777777765
No 64
>PTZ00207 hypothetical protein; Provisional
Probab=26.07 E-value=90 Score=31.44 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=26.5
Q ss_pred hHhhHHHHHHHHhcCCccccchHHHHHHhhhhHHH--HHhhhh
Q 042988 146 YAAPLTVMKMVISTKSVKYMPLALAIGNAANGAVW--VVYACL 186 (255)
Q Consensus 146 ~~sPL~~i~~vi~tks~~~l~~~~~~~~~~~~~lW--~~YG~l 186 (255)
++.-.+..+++.- |+-..+-=-...++.+.+.+- .+||.+
T Consensus 470 ~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~ 511 (591)
T PTZ00207 470 AATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW 511 (591)
T ss_pred HHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 3333456788888 877776656667777777776 677754
No 65
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.00 E-value=2.3e+02 Score=24.62 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=38.4
Q ss_pred hHhhHHHHHHHHhcCCccccchHHH----HHHhhhhHHHHHhhhhcCCceeEechhHHHHHHHHHHhhh
Q 042988 146 YAAPLTVMKMVISTKSVKYMPLALA----IGNAANGAVWVVYACLRFDPYVLIPNGLGTLSGILQLTLY 210 (255)
Q Consensus 146 ~~sPL~~i~~vi~tks~~~l~~~~~----~~~~~~~~lW~~YG~l~~D~~i~ipN~iG~~l~~~ql~l~ 210 (255)
-.|=|||++...|++.+|.+-..-. +.=++-+.-|. |-....|.+- + +.++.|++|..+|
T Consensus 128 sVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI-~r~~~e~~~~---~-iai~agiVQT~ly 191 (212)
T KOG3106|consen 128 SVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWI-YRYVTEDFWD---P-IAIVAGIVQTVLY 191 (212)
T ss_pred HHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc---c-hHHHHHHHHHHHH
Confidence 3467999999999999999864433 33344555564 3334455332 2 4566677777765
No 66
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=24.02 E-value=4.6e+02 Score=22.46 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCc----cccchHHHHHHhhhh
Q 042988 150 LTVMKMVISTKSV----KYMPLALAIGNAANG 177 (255)
Q Consensus 150 L~~i~~vi~tks~----~~l~~~~~~~~~~~~ 177 (255)
+..+||.++..+. +++|..+..++...-
T Consensus 150 ~a~iRE~l~~~~vP~~~~G~pI~li~aglmal 181 (190)
T TIGR01943 150 FAGIRERLDLSDVPKAFRGSPIALITAGLMSL 181 (190)
T ss_pred HHHHHHHHccCCCCccccCcCHHHHHHHHHHH
Confidence 4569999998777 888877666555443
No 67
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=23.54 E-value=7.1e+02 Score=24.44 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=50.6
Q ss_pred CcccchhHHHHHHHHHHHHHHhcccccCCceE--EEeehhhhHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH----
Q 042988 40 ENFKADPYIATVLNCFVWTFYGLPFVHPDSTL--VVTINGAGAAIELFYVLIFVIFSSWGKRRKIFVALVVEVVFM---- 113 (255)
Q Consensus 40 g~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~--v~~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~~~~~~~~~~~---- 113 (255)
.+.+....+....+...=...| ++. |..+ ....+.++.+...+... +...+..-. .+..+...+-+.
T Consensus 333 ~~aa~l~Siigi~~i~gRi~~G--~la-D~~~~~~~~~~~~~ll~~gl~~~-~~p~~~~~~---~l~~~~~~fG~~~g~~ 405 (509)
T KOG2504|consen 333 NDAAFLLSIIGVSDIIGRIILG--LLA-DKPGIRALVLFLLTLLIAGLARL-FLPFATTYV---GLIVFSILFGFCVGSF 405 (509)
T ss_pred hhhHHHHHHHHHhhhhhhhhhh--hhc-CccccchHHHHHHHHHHHHHHHH-HHHHhccHH---HHHHHHHHHHHHHHHH
Confidence 3447778888888899999999 455 3332 33444455544443331 111111110 111111111111
Q ss_pred HHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhh
Q 042988 114 AILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAP 149 (255)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sP 149 (255)
..+...+.....+.|......|++..+-++.....|
T Consensus 406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp 441 (509)
T KOG2504|consen 406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP 441 (509)
T ss_pred HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence 111111112223467778888888888887776544
No 68
>PRK10746 putative transport protein YifK; Provisional
Probab=22.78 E-value=2.2e+02 Score=27.30 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHhhheeecCCCCCCCCc
Q 042988 195 PNGLGTLSGILQLTLYAIFYKTTNWDGDD 223 (255)
Q Consensus 195 pN~iG~~l~~~ql~l~~~y~~~~~~~~~~ 223 (255)
....|..+-...+..|+.|...++.+.|+
T Consensus 430 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 458 (461)
T PRK10746 430 SLFVGIIFLLAVTLIYKVFGLNRHGKAHK 458 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhh
Confidence 45566666566666677765555444444
No 69
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.57 E-value=1.6e+02 Score=26.43 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=37.6
Q ss_pred ceehhhHHHHHHHHHhHhhHHHHHHHHhc------CCccccchH--HHHHHhh-hhHHHHHhhhhcCCceeEech
Q 042988 131 TTVVGIIAVVFNIVMYAAPLTVMKMVIST------KSVKYMPLA--LAIGNAA-NGAVWVVYACLRFDPYVLIPN 196 (255)
Q Consensus 131 ~~~~G~~~~~~si~~~~sPL~~i~~vi~t------ks~~~l~~~--~~~~~~~-~~~lW~~YG~l~~D~~i~ipN 196 (255)
++++|.+.++++-++|++-+-=+.-+..+ .+.+.+++. -+...++ +.+.+.+|.+..++..-+=||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 47889999999999988533333333222 234555433 2333333 455556777777766554444
No 70
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.46 E-value=1.3e+02 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=23.4
Q ss_pred hcCCceeEechhHHHHHHHHHHhhheeecCCCC
Q 042988 186 LRFDPYVLIPNGLGTLSGILQLTLYAIFYKTTN 218 (255)
Q Consensus 186 l~~D~~i~ipN~iG~~l~~~ql~l~~~y~~~~~ 218 (255)
++...|+.+.-.-.++.|++-+.-+|.|++...
T Consensus 58 LTPKFYVALTGTSSLiSGlILIFEWWYF~k~gt 90 (556)
T KOG3807|consen 58 LTPKFYVALTGTSSLISGLILIFEWWYFHKHGT 90 (556)
T ss_pred CCcceEEEeecchHHHhhHHHHHHhHhhhccCc
Confidence 556777777777777777777777777766533
No 71
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.15 E-value=1e+02 Score=19.78 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhheeecCCC
Q 042988 198 LGTLSGILQLTLYAIFYKTT 217 (255)
Q Consensus 198 iG~~l~~~ql~l~~~y~~~~ 217 (255)
+|.+.-+.-+.+|++|+++|
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 34455555566777787764
No 72
>PRK11387 S-methylmethionine transporter; Provisional
Probab=21.01 E-value=4.5e+02 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHH
Q 042988 14 IGNVISLGLFLSPIPTMAAIVR 35 (255)
Q Consensus 14 l~~i~ti~~~lSplp~i~~i~k 35 (255)
+++...+..|+.+.-...+.+|
T Consensus 370 l~~~~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 370 ISGFAVVAVWLSICASHFMFRR 391 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444544444333333
Done!