Query 042988
Match_columns 255
No_of_seqs 151 out of 1474
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 74.8 7.3 0.00025 35.8 7.5 16 135-150 371-386 (511)
2 3l1l_A Arginine/agmatine antip 35.5 1.5E+02 0.0052 26.0 8.8 22 198-219 412-433 (445)
3 4gc0_A D-xylose-proton symport 27.6 72 0.0024 28.2 5.1 16 208-223 458-473 (491)
4 2knc_A Integrin alpha-IIB; tra 16.1 53 0.0018 21.5 1.1 11 165-175 10-20 (54)
5 4aps_A DI-OR tripeptide H+ sym 12.4 6.8E+02 0.023 21.6 10.7 13 49-61 288-300 (491)
6 2jln_A MHP1; hydantoin, transp 12.1 64 0.0022 30.0 1.0 26 197-222 431-457 (501)
7 2nr1_A NR1 M2, M2; receptor, s 11.7 74 0.0025 17.7 0.7 14 175-188 9-22 (27)
8 3bkd_A Transmembrane domain of 8.9 54 0.0019 17.9 -0.5 14 188-201 2-15 (26)
9 2lat_A Dolichyl-diphosphooligo 7.4 4.2E+02 0.015 15.7 3.5 20 1-20 1-20 (37)
10 3tlw_A GLR4197 protein, GLIC; 7.3 1E+03 0.034 20.0 9.8 104 77-185 207-321 (321)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=74.84 E-value=7.3 Score=35.77 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHhHhhH
Q 042988 135 GIIAVVFNIVMYAAPL 150 (255)
Q Consensus 135 G~~~~~~si~~~~sPL 150 (255)
.-++++...+.|+.+.
T Consensus 371 ~~~~~~~~~~~y~~~~ 386 (511)
T 4djk_A 371 LALTVVIYLCAYFMLF 386 (511)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444555443
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.54 E-value=1.5e+02 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhheeecCCCCC
Q 042988 198 LGTLSGILQLTLYAIFYKTTNW 219 (255)
Q Consensus 198 iG~~l~~~ql~l~~~y~~~~~~ 219 (255)
.|...-..=+.+|+++++++++
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3444445555566666555443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=27.58 E-value=72 Score=28.22 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=9.3
Q ss_pred hhheeecCCCCCCCCc
Q 042988 208 TLYAIFYKTTNWDGDD 223 (255)
Q Consensus 208 ~l~~~y~~~~~~~~~~ 223 (255)
..++..|..|.+..||
T Consensus 458 ~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 458 FMWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHHCCCCTTCCHHH
T ss_pred HHHheecCCCCCCHHH
Confidence 3445566666666655
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.10 E-value=53 Score=21.47 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.5
Q ss_pred cchHHHHHHhh
Q 042988 165 MPLALAIGNAA 175 (255)
Q Consensus 165 l~~~~~~~~~~ 175 (255)
+|.+..+.+.+
T Consensus 10 vp~wiIi~svl 20 (54)
T 2knc_A 10 IPIWWVLVGVL 20 (54)
T ss_dssp CCHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 44444443333
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=12.35 E-value=6.8e+02 Score=21.61 Aligned_cols=13 Identities=8% Similarity=0.324 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q 042988 49 ATVLNCFVWTFYG 61 (255)
Q Consensus 49 ~~~~n~~~W~~YG 61 (255)
........|..|+
T Consensus 288 ~~~~~~~~~~~~~ 300 (491)
T 4aps_A 288 LFIAAVLFWAIEE 300 (491)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHh
Confidence 3334455565555
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=12.14 E-value=64 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=11.1
Q ss_pred hHHHHHH-HHHHhhheeecCCCCCCCC
Q 042988 197 GLGTLSG-ILQLTLYAIFYKTTNWDGD 222 (255)
Q Consensus 197 ~iG~~l~-~~ql~l~~~y~~~~~~~~~ 222 (255)
.+|++.+ +.+..+....|+..++..|
T Consensus 431 ~~g~~va~v~Y~~l~~~~~~~~~~~~~ 457 (501)
T 2jln_A 431 VTGLIAALLLHIPAMRWVAKTFPLFSE 457 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCCG
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 4444443 3444444445553333333
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.73 E-value=74 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.5
Q ss_pred hhhHHHHHhhhhcC
Q 042988 175 ANGAVWVVYACLRF 188 (255)
Q Consensus 175 ~~~~lW~~YG~l~~ 188 (255)
+.+.+|+..|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678999998763
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=8.93 E-value=54 Score=17.92 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.8
Q ss_pred CCceeEechhHHHH
Q 042988 188 FDPYVLIPNGLGTL 201 (255)
Q Consensus 188 ~D~~i~ipN~iG~~ 201 (255)
+|..++..|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57778888888874
No 9
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.38 E-value=4.2e+02 Score=15.72 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 042988 1 MVETGLIRTVVGIIGNVISL 20 (255)
Q Consensus 1 ~~~~~~~~~i~g~l~~i~ti 20 (255)
|+++++...+.-.+|...-+
T Consensus 1 MIsD~qL~~lan~lG~~~~~ 20 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFL 20 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 78777776666666655444
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=7.34 E-value=1e+03 Score=20.02 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCCccceehhhHHHHHHHHHhHhhHHHHHHH
Q 042988 77 GAGAAIELFYVLIFVIFSSWGKRRKIFVALVVEVVFMAILIFVTLYFLHTTDDRTTVVGIIAVVFNIVMYAAPLTVMKMV 156 (255)
Q Consensus 77 ~~G~~l~~~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~si~~~~sPL~~i~~v 156 (255)
.+..++.+.-.+.|+ +.....|+. +++..++...+.........++......+|..-.++-+++++|=+..+--.
T Consensus 207 iP~~li~~ls~~sF~---p~~~~~Rv~--l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~ 281 (321)
T 3tlw_A 207 LPMLFILFISWTAFW---STSYEANVT--LVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQH 281 (321)
T ss_dssp HHHHHHHHHHGGGGG---CCCHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeec---cCCCCCcEE--EEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HhcCCccccc-----------hHHHHHHhhhhHHHHHhhh
Q 042988 157 ISTKSVKYMP-----------LALAIGNAANGAVWVVYAC 185 (255)
Q Consensus 157 i~tks~~~l~-----------~~~~~~~~~~~~lW~~YG~ 185 (255)
.-.+....-. ++........-..|.+||.
T Consensus 282 ~l~~~~~~~~a~~~p~w~r~~fp~~f~~~~~i~~~~~~~~ 321 (321)
T 3tlw_A 282 YLKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF 321 (321)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhcCCccccccccChhheeeehHHHHHHHHHHHhhhccC
Done!