Query 042988
Match_columns 255
No_of_seqs 151 out of 1474
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 20:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042988.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042988hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 17.3 55 0.004 25.0 4.0 6 78-83 45-50 (417)
2 d1xioa_ f.13.1.1 (A:) Sensory 9.9 3.3E+02 0.024 20.2 9.6 33 153-186 150-182 (226)
3 d1vf5c3 f.23.23.1 (C:250-286) 9.1 1.4E+02 0.011 16.3 2.9 17 150-166 18-34 (37)
4 d1hn6a_ g.61.1.1 (A:) Apical m 8.5 1.1E+02 0.0077 20.8 2.6 10 235-244 29-38 (110)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 8.1 1.3E+02 0.0095 15.3 2.2 17 78-94 10-26 (30)
6 d1pv7a_ f.38.1.2 (A:) Lactose 7.9 1.8E+02 0.013 21.7 4.3 15 214-228 400-414 (417)
7 d1vi0a2 a.121.1.1 (A:78-194) H 6.1 2.9E+02 0.021 17.2 4.2 35 153-187 57-92 (117)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 94 0.0069 20.2 1.3 20 199-218 29-48 (91)
9 d1rkla_ f.23.30.1 (A:) Oligosa 5.2 1.3E+02 0.0092 16.2 1.2 20 196-215 8-27 (36)
10 d1t27a_ d.129.3.4 (A:) Phoshat 5.1 1.4E+02 0.01 23.8 1.9 33 223-255 112-144 (269)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=17.33 E-value=55 Score=25.04 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.3
Q ss_pred hhHHHH
Q 042988 78 AGAAIE 83 (255)
Q Consensus 78 ~G~~l~ 83 (255)
+|.+.+
T Consensus 45 ~g~i~s 50 (417)
T d1pv7a_ 45 TGIIFA 50 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=9.94 E-value=3.3e+02 Score=20.18 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=17.8
Q ss_pred HHHHHhcCCccccchHHHHHHhhhhHHHHHhhhh
Q 042988 153 MKMVISTKSVKYMPLALAIGNAANGAVWVVYACL 186 (255)
Q Consensus 153 i~~vi~tks~~~l~~~~~~~~~~~~~lW~~YG~l 186 (255)
.++..++++.+ ....-.....+..++|.+|++.
T Consensus 150 ~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 150 LRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444332 2222233445567899999975
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.10 E-value=1.4e+02 Score=16.34 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCccccc
Q 042988 150 LTVMKMVISTKSVKYMP 166 (255)
Q Consensus 150 L~~i~~vi~tks~~~l~ 166 (255)
+.|+--|+|+|..|.+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677777666543
No 4
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=8.53 E-value=1.1e+02 Score=20.80 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=5.6
Q ss_pred CCCCCCCCcC
Q 042988 235 NGNGSNNNRR 244 (255)
Q Consensus 235 ~~~~~~~~~~ 244 (255)
|.|++||++|
T Consensus 29 ~~~d~~gn~~ 38 (110)
T d1hn6a_ 29 NDNDDEGNKK 38 (110)
T ss_dssp TCCCCCSSCC
T ss_pred cccCcCCcce
Confidence 5566665544
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.13 E-value=1.3e+02 Score=15.35 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHhhcc
Q 042988 78 AGAAIELFYVLIFVIFS 94 (255)
Q Consensus 78 ~G~~l~~~y~~v~~~y~ 94 (255)
+.++++.++..+|++-.
T Consensus 10 fac~i~lfffaiffrep 26 (30)
T d2axtt1 10 FACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 44555555555555443
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=1.8e+02 Score=21.70 Aligned_cols=15 Identities=7% Similarity=-0.319 Sum_probs=5.9
Q ss_pred cCCCCCCCCcccccc
Q 042988 214 YKTTNWDGDDDENRN 228 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~ 228 (255)
.+++++...++|+-|
T Consensus 400 l~~~~~~~~~r~~~~ 414 (417)
T d1pv7a_ 400 LSGPGPLSLLRRQVN 414 (417)
T ss_dssp SCCSSCTTHHHHHHH
T ss_pred hcCCCccchhHhhhc
Confidence 344433433344333
No 7
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=6.13 E-value=2.9e+02 Score=17.23 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=27.3
Q ss_pred HHHHHhcCCcc-ccchHHHHHHhhhhHHHHHhhhhc
Q 042988 153 MKMVISTKSVK-YMPLALAIGNAANGAVWVVYACLR 187 (255)
Q Consensus 153 i~~vi~tks~~-~l~~~~~~~~~~~~~lW~~YG~l~ 187 (255)
+++-++.+... ++++......+++.+.|.+|-.+.
T Consensus 57 i~~g~~~G~ir~d~d~~~~a~~i~g~i~~~~~~w~~ 92 (117)
T d1vi0a2 57 LTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVM 92 (117)
T ss_dssp HHHHHHTTCBCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788885 699999999999999898764444
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.04 E-value=94 Score=20.22 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhheeecCCCC
Q 042988 199 GTLSGILQLTLYAIFYKTTN 218 (255)
Q Consensus 199 G~~l~~~ql~l~~~y~~~~~ 218 (255)
++.....-+...++|++++.
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHhhheeeeccCC
Confidence 33333444445555655543
No 9
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.17 E-value=1.3e+02 Score=16.16 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhhheeecC
Q 042988 196 NGLGTLSGILQLTLYAIFYK 215 (255)
Q Consensus 196 N~iG~~l~~~ql~l~~~y~~ 215 (255)
|.+.+.+++..+.+..+|..
T Consensus 8 n~~~i~fgi~mmtliviyh~ 27 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHhh
Confidence 88888899999999888854
No 10
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.10 E-value=1.4e+02 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCCCCCCCcCCCCcccccccC
Q 042988 223 DDENRNDNNGNGNGNGSNNNRRGRGEVQLVDVA 255 (255)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (255)
|..|.+|+..++|.-+-+.+....-||-.+|||
T Consensus 112 ET~h~~d~g~~eNv~~L~~e~l~~ReV~~IDIa 144 (269)
T d1t27a_ 112 ETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIA 144 (269)
T ss_dssp EEEEESSCSCCTTTTCCCTTGGGGCEEEEECTT
T ss_pred EEEEcCCCCCcccccCCCHHHhcceEEEEeccc
Done!