BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042990
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
EC +CL+E G+ R LP+C HGFH C+D WL SHS+CP CR
Sbjct: 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 66 NLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
N T CV+C+ +F + LR+LP CNH FH +C+DKWL ++ +CP CR
Sbjct: 18 NHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120
G EC +C ++A G+ +R LP CNH FH CI WL H SCP CR L
Sbjct: 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 45 NKGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104
N ++++ P + + + G + C IC SE+ GD LP C+H FH C+
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSI 72
Query: 105 WLSSHSSCPKCR 116
WL +CP CR
Sbjct: 73 WLQKSGTCPVCR 84
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+C ICLS G+ +R LP C H FH C+D+WL ++ CP CR
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 64 ELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETC 123
ELNL L C +CL +F D L + P C H FH +C+ KWL CP C +++
Sbjct: 11 ELNLHEL---CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66
Query: 124 Q 124
Q
Sbjct: 67 Q 67
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+ EC IC+ R L+ C H F +CIDKW H +CP CR
Sbjct: 15 EEECCICMD-----GRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 75 CNHAFHFHCISRWLKTRQVCP 95
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 84 CNHAFHFHCISRWLKTRQVCP 104
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 67 CNHAFHFHCISRWLKTRQVCP 87
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 57 CNHAFHFHCISRWLKTRQVCP 77
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 65 CNHAFHFHCISRWLKTRQVCP 85
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117
C+ C +E D + + +CNH FH C+ W+ ++ CP C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 73 CNHAFHFHCISRWLKTRQVCP 93
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 CNHGFHVRCIDKWLSSHSSCP 113
CNH FH CI +WL + CP
Sbjct: 73 CNHAFHFHCISRWLKTRQVCP 93
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115
C IC F ++P+C+H + CI K+LS + CP C
Sbjct: 25 CGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+ +C+IC F L C H F CI++W+ CP CR
Sbjct: 53 ELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+ +C+IC F L C H F CI++W+ CP CR
Sbjct: 53 ELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+ +C+IC F L C H F CI++W+ CP CR
Sbjct: 64 ELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICR 105
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 67 LAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
+A + C ICL + + LP C H F CI +W+ + +CP C+
Sbjct: 1 MATVAERCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 69 GLDTECVICL---SEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
G C IC+ SE RL + +C H F +C+ L + ++CP CR
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 74 CVICL---SEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
C IC+ SE RL + +C H F +C+ L + ++CP CR
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 74 CVICL---SEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
C IC+ SE RL + +C H F +C+ L + ++CP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 74 CVICL---SEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
C IC+ SE RL + +C H F +C+ L + ++CP CR
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 74 CVICL---SEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116
C IC+ SE RL + +C H F +C+ L + ++CP CR
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 188 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 24 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 16 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCR 116
C +C G D+ + +C+ FH+ C+D LSS S CP+CR
Sbjct: 21 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 15/59 (25%)
Query: 58 VVSYSAELNLAGLDTECVICLSEFAAG-------DRLRLLP-------KCNHGFHVRCI 102
+ Y+ EL +A + +C+IC+ + A D L P KC+H FH+ C+
Sbjct: 13 IRKYTEELKVA-PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCL 70
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 16 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 74 CVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCRH 117
C +C G D+ + +C+ FH+ C+D LSS S CP+CR+
Sbjct: 18 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 70
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 85 DRLRLLPKCNHGFHVRCIDKWLSSHSS-----CPKCR 116
D+ + +C+ FH+ C+D LSS S CP+CR
Sbjct: 18 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117
C ICL + + + C H H C ++ L CP C H
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,424,891
Number of Sequences: 62578
Number of extensions: 152624
Number of successful extensions: 404
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 48
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)