Query 042990
Match_columns 165
No_of_seqs 131 out of 1509
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3.3E-20 7.1E-25 152.3 9.2 79 44-124 203-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 6E-17 1.3E-21 96.1 2.1 44 72-116 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.5 5.9E-14 1.3E-18 92.0 4.0 47 70-116 18-73 (73)
4 PHA02929 N1R/p28-like protein; 99.5 6.6E-14 1.4E-18 110.5 4.8 76 46-121 148-228 (238)
5 COG5243 HRD1 HRD ubiquitin lig 99.4 1.4E-12 3.1E-17 107.2 8.0 71 50-124 269-349 (491)
6 COG5540 RING-finger-containing 99.3 1.1E-12 2.4E-17 105.2 3.5 51 70-121 322-373 (374)
7 KOG0317 Predicted E3 ubiquitin 99.3 6.3E-12 1.4E-16 100.4 5.5 50 69-122 237-286 (293)
8 PF12861 zf-Apc11: Anaphase-pr 99.2 7.7E-12 1.7E-16 83.4 3.5 52 70-121 20-83 (85)
9 PLN03208 E3 ubiquitin-protein 99.2 3.2E-11 7E-16 92.0 7.1 49 69-121 16-80 (193)
10 COG5194 APC11 Component of SCF 99.2 1.6E-11 3.5E-16 80.1 2.8 53 72-124 32-85 (88)
11 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.3E-11 7.3E-16 73.1 3.4 46 71-120 2-48 (50)
12 cd00162 RING RING-finger (Real 99.1 8.6E-11 1.9E-15 68.5 3.6 44 73-119 1-45 (45)
13 PF13923 zf-C3HC4_2: Zinc fing 99.1 9.8E-11 2.1E-15 67.5 3.1 39 74-115 1-39 (39)
14 PHA02926 zinc finger-like prot 99.0 3.1E-10 6.7E-15 88.0 3.6 53 68-120 167-230 (242)
15 KOG0802 E3 ubiquitin ligase [P 99.0 2E-10 4.4E-15 100.8 1.9 50 70-120 290-341 (543)
16 KOG0320 Predicted E3 ubiquitin 98.9 5.9E-10 1.3E-14 83.5 3.2 50 69-120 129-178 (187)
17 PF15227 zf-C3HC4_4: zinc fing 98.9 7.8E-10 1.7E-14 64.8 3.1 38 74-115 1-42 (42)
18 PF14634 zf-RING_5: zinc-RING 98.9 9.3E-10 2E-14 65.0 3.2 44 73-117 1-44 (44)
19 KOG0823 Predicted E3 ubiquitin 98.9 7.5E-10 1.6E-14 86.2 2.9 50 68-121 44-96 (230)
20 KOG1493 Anaphase-promoting com 98.9 2.8E-10 6.1E-15 73.8 0.0 51 70-120 19-81 (84)
21 KOG2930 SCF ubiquitin ligase, 98.9 6.4E-10 1.4E-14 76.1 1.0 53 71-123 46-111 (114)
22 PF00097 zf-C3HC4: Zinc finger 98.9 2.3E-09 5E-14 62.1 3.2 39 74-115 1-41 (41)
23 smart00184 RING Ring finger. E 98.9 2.5E-09 5.4E-14 60.1 3.2 38 74-115 1-39 (39)
24 smart00504 Ubox Modified RING 98.8 7.6E-09 1.7E-13 65.2 4.1 46 72-121 2-47 (63)
25 TIGR00599 rad18 DNA repair pro 98.7 1.3E-08 2.7E-13 86.0 3.7 49 69-121 24-72 (397)
26 KOG1734 Predicted RING-contain 98.6 7.7E-09 1.7E-13 82.2 0.4 50 70-120 223-281 (328)
27 COG5574 PEX10 RING-finger-cont 98.6 2.7E-08 5.9E-13 78.8 2.4 50 69-122 213-264 (271)
28 KOG0828 Predicted E3 ubiquitin 98.6 6.5E-08 1.4E-12 82.5 4.6 51 70-121 570-635 (636)
29 smart00744 RINGv The RING-vari 98.5 1.6E-07 3.4E-12 56.8 3.2 42 73-116 1-49 (49)
30 PF11793 FANCL_C: FANCL C-term 98.4 6.2E-08 1.3E-12 62.9 0.5 50 71-120 2-66 (70)
31 PF13445 zf-RING_UBOX: RING-ty 98.4 2.9E-07 6.4E-12 54.0 2.7 33 74-108 1-34 (43)
32 KOG2164 Predicted E3 ubiquitin 98.3 2.6E-07 5.5E-12 79.2 2.7 47 71-121 186-237 (513)
33 KOG0827 Predicted E3 ubiquitin 98.3 3.6E-07 7.8E-12 76.0 1.9 49 71-119 4-55 (465)
34 COG5432 RAD18 RING-finger-cont 98.3 3.3E-07 7.1E-12 73.8 1.6 52 69-124 23-74 (391)
35 KOG0804 Cytoplasmic Zn-finger 98.3 3.2E-07 7E-12 77.5 1.4 48 70-120 174-222 (493)
36 COG5219 Uncharacterized conser 98.2 2.3E-07 5E-12 84.3 0.3 52 69-120 1467-1523(1525)
37 TIGR00570 cdk7 CDK-activating 98.2 1.1E-06 2.4E-11 71.7 4.1 52 71-123 3-57 (309)
38 PF04564 U-box: U-box domain; 98.2 1.1E-06 2.3E-11 57.4 3.1 49 70-122 3-52 (73)
39 KOG0287 Postreplication repair 98.2 3.8E-07 8.3E-12 74.8 1.1 51 71-125 23-73 (442)
40 PF14835 zf-RING_6: zf-RING of 98.1 7.7E-07 1.7E-11 56.2 0.5 50 71-125 7-56 (65)
41 KOG1645 RING-finger-containing 98.1 2.9E-06 6.3E-11 71.1 3.2 49 70-118 3-54 (463)
42 KOG2177 Predicted E3 ubiquitin 98.1 1.7E-06 3.8E-11 68.4 1.8 44 69-116 11-54 (386)
43 KOG0311 Predicted E3 ubiquitin 97.9 1.2E-06 2.5E-11 72.3 -1.4 55 69-126 41-96 (381)
44 KOG4265 Predicted E3 ubiquitin 97.9 8.2E-06 1.8E-10 67.4 3.0 50 69-122 288-338 (349)
45 KOG3970 Predicted E3 ubiquitin 97.8 1.6E-05 3.5E-10 62.1 2.8 58 63-122 42-107 (299)
46 KOG1785 Tyrosine kinase negati 97.7 3E-05 6.4E-10 65.1 3.6 51 72-126 370-422 (563)
47 KOG0824 Predicted E3 ubiquitin 97.7 1.5E-05 3.3E-10 64.5 1.9 48 71-122 7-55 (324)
48 KOG0825 PHD Zn-finger protein 97.6 8.7E-06 1.9E-10 73.1 -0.5 49 72-121 124-172 (1134)
49 KOG1039 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 64.6 2.4 51 69-119 159-220 (344)
50 KOG1941 Acetylcholine receptor 97.6 2.8E-05 6.1E-10 65.1 2.0 46 70-116 364-412 (518)
51 PF11789 zf-Nse: Zinc-finger o 97.5 6.8E-05 1.5E-09 46.6 2.0 42 70-114 10-53 (57)
52 KOG4445 Uncharacterized conser 97.5 2.6E-05 5.7E-10 63.2 0.0 53 69-122 113-188 (368)
53 KOG0978 E3 ubiquitin ligase in 97.4 5E-05 1.1E-09 68.1 1.3 49 70-122 642-691 (698)
54 PHA02862 5L protein; Provision 97.4 0.00014 2.9E-09 53.2 2.9 48 71-121 2-54 (156)
55 PF05883 Baculo_RING: Baculovi 97.4 5.8E-05 1.3E-09 54.6 0.9 35 71-106 26-66 (134)
56 KOG4172 Predicted E3 ubiquitin 97.4 5.2E-05 1.1E-09 46.3 0.3 47 70-120 6-54 (62)
57 KOG4159 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 61.2 2.1 49 69-121 82-130 (398)
58 KOG1428 Inhibitor of type V ad 97.2 0.00028 6.1E-09 67.3 3.1 64 56-120 3471-3544(3738)
59 PHA02825 LAP/PHD finger-like p 97.1 0.00049 1.1E-08 51.1 3.4 50 69-122 6-61 (162)
60 KOG0297 TNF receptor-associate 97.1 0.00026 5.6E-09 60.2 2.2 51 69-122 19-69 (391)
61 COG5236 Uncharacterized conser 97.0 0.00098 2.1E-08 55.3 4.3 70 47-120 37-108 (493)
62 PF12906 RINGv: RING-variant d 96.9 0.0007 1.5E-08 40.4 2.1 41 74-115 1-47 (47)
63 PF10367 Vps39_2: Vacuolar sor 96.9 0.00048 1E-08 47.4 1.4 34 69-104 76-109 (109)
64 COG5152 Uncharacterized conser 96.8 0.00039 8.4E-09 53.5 0.9 44 72-119 197-240 (259)
65 KOG0801 Predicted E3 ubiquitin 96.8 0.00036 7.9E-09 52.0 0.6 30 70-100 176-205 (205)
66 PF14570 zf-RING_4: RING/Ubox 96.6 0.0018 4E-08 38.7 2.3 45 74-119 1-47 (48)
67 KOG1952 Transcription factor N 96.6 0.0012 2.6E-08 60.1 2.0 51 69-119 189-246 (950)
68 KOG1002 Nucleotide excision re 96.5 0.001 2.2E-08 58.0 1.2 48 69-120 534-586 (791)
69 KOG2660 Locus-specific chromos 96.5 0.0008 1.7E-08 55.3 0.4 51 69-122 13-63 (331)
70 KOG3268 Predicted E3 ubiquitin 96.3 0.0022 4.8E-08 48.6 1.9 29 92-120 189-228 (234)
71 PF08746 zf-RING-like: RING-li 96.3 0.0028 6E-08 37.1 1.8 41 74-115 1-43 (43)
72 KOG3039 Uncharacterized conser 96.2 0.0049 1.1E-07 49.0 3.2 52 70-121 220-271 (303)
73 KOG0826 Predicted E3 ubiquitin 96.1 0.021 4.6E-07 47.1 6.8 48 69-119 298-345 (357)
74 KOG1571 Predicted E3 ubiquitin 95.7 0.0068 1.5E-07 50.5 2.2 46 69-121 303-348 (355)
75 PF14446 Prok-RING_1: Prokaryo 95.7 0.015 3.2E-07 35.6 3.1 35 70-104 4-38 (54)
76 PHA03096 p28-like protein; Pro 95.6 0.0071 1.5E-07 49.4 1.8 48 72-119 179-236 (284)
77 KOG1813 Predicted E3 ubiquitin 95.3 0.0065 1.4E-07 49.4 0.7 45 72-120 242-286 (313)
78 KOG4185 Predicted E3 ubiquitin 95.2 0.014 2.9E-07 47.6 2.4 48 71-119 3-54 (296)
79 PF10272 Tmpp129: Putative tra 95.0 0.031 6.8E-07 47.0 4.2 52 69-121 269-352 (358)
80 KOG1814 Predicted E3 ubiquitin 95.0 0.013 2.8E-07 49.6 1.9 37 70-107 183-219 (445)
81 KOG3053 Uncharacterized conser 94.9 0.011 2.4E-07 47.2 1.2 55 69-123 18-85 (293)
82 KOG2879 Predicted E3 ubiquitin 94.9 0.034 7.3E-07 44.9 3.8 50 69-121 237-288 (298)
83 COG5175 MOT2 Transcriptional r 94.9 0.02 4.4E-07 47.5 2.5 52 69-121 12-65 (480)
84 PF14447 Prok-RING_4: Prokaryo 94.7 0.019 4.1E-07 35.2 1.4 43 73-121 9-51 (55)
85 COG5222 Uncharacterized conser 94.6 0.02 4.4E-07 46.8 2.0 43 72-117 275-318 (427)
86 PF04641 Rtf2: Rtf2 RING-finge 94.6 0.047 1E-06 43.9 4.1 52 69-121 111-162 (260)
87 KOG2034 Vacuolar sorting prote 94.5 0.016 3.5E-07 53.3 1.3 36 69-106 815-850 (911)
88 KOG4739 Uncharacterized protei 94.5 0.013 2.8E-07 46.3 0.6 44 73-120 5-48 (233)
89 KOG4692 Predicted E3 ubiquitin 94.3 0.049 1.1E-06 45.6 3.5 49 69-121 420-468 (489)
90 KOG0827 Predicted E3 ubiquitin 94.3 0.0024 5.2E-08 53.7 -4.2 50 71-121 196-246 (465)
91 KOG4275 Predicted E3 ubiquitin 94.2 0.0061 1.3E-07 49.6 -1.8 43 71-121 300-343 (350)
92 KOG0309 Conserved WD40 repeat- 94.1 0.028 6E-07 51.2 1.8 23 92-114 1047-1069(1081)
93 KOG2114 Vacuolar assembly/sort 94.0 0.026 5.6E-07 51.8 1.4 41 72-118 841-881 (933)
94 PF07800 DUF1644: Protein of u 93.7 0.079 1.7E-06 39.5 3.4 36 71-107 2-47 (162)
95 COG5220 TFB3 Cdk activating ki 93.5 0.033 7.2E-07 44.2 1.2 47 70-116 9-60 (314)
96 KOG1940 Zn-finger protein [Gen 93.4 0.05 1.1E-06 44.2 2.0 46 71-117 158-204 (276)
97 KOG1609 Protein involved in mR 92.3 0.082 1.8E-06 43.0 1.9 52 70-121 77-135 (323)
98 KOG3800 Predicted E3 ubiquitin 91.7 0.17 3.6E-06 41.2 2.9 48 73-120 2-51 (300)
99 KOG1001 Helicase-like transcri 91.3 0.074 1.6E-06 48.4 0.6 47 72-123 455-503 (674)
100 KOG2817 Predicted E3 ubiquitin 90.9 0.86 1.9E-05 38.7 6.5 48 70-118 333-383 (394)
101 KOG3161 Predicted E3 ubiquitin 90.1 0.094 2E-06 47.0 0.2 39 72-113 12-51 (861)
102 KOG0298 DEAD box-containing he 89.9 0.085 1.8E-06 50.5 -0.3 49 70-121 1152-1200(1394)
103 KOG3899 Uncharacterized conser 89.7 0.17 3.7E-06 41.4 1.3 29 93-121 325-366 (381)
104 PF05290 Baculo_IE-1: Baculovi 89.3 0.34 7.3E-06 35.1 2.5 52 70-123 79-135 (140)
105 COG5183 SSM4 Protein involved 89.0 0.31 6.7E-06 45.0 2.6 52 69-121 10-67 (1175)
106 PF01102 Glycophorin_A: Glycop 88.5 0.69 1.5E-05 33.1 3.6 27 2-28 66-92 (122)
107 PF03854 zf-P11: P-11 zinc fin 88.0 0.22 4.7E-06 29.7 0.6 29 93-121 18-47 (50)
108 PF13901 DUF4206: Domain of un 87.2 0.51 1.1E-05 36.6 2.5 41 70-116 151-196 (202)
109 KOG1812 Predicted E3 ubiquitin 87.0 0.25 5.5E-06 42.0 0.8 38 70-108 145-183 (384)
110 KOG2932 E3 ubiquitin ligase in 86.3 0.31 6.7E-06 40.2 0.9 41 73-118 92-132 (389)
111 KOG0802 E3 ubiquitin ligase [P 86.3 0.5 1.1E-05 41.9 2.3 50 69-126 477-526 (543)
112 KOG1829 Uncharacterized conser 85.6 0.29 6.4E-06 43.6 0.5 41 71-115 511-556 (580)
113 PF12273 RCR: Chitin synthesis 85.4 0.78 1.7E-05 32.9 2.5 25 5-29 4-28 (130)
114 KOG3002 Zn finger protein [Gen 85.2 0.68 1.5E-05 38.2 2.4 43 71-121 48-92 (299)
115 KOG1100 Predicted E3 ubiquitin 84.8 0.71 1.5E-05 36.0 2.2 40 74-121 161-201 (207)
116 KOG0269 WD40 repeat-containing 83.6 1 2.3E-05 41.2 3.0 42 71-114 779-820 (839)
117 smart00249 PHD PHD zinc finger 83.2 0.9 1.9E-05 25.5 1.7 31 73-104 1-31 (47)
118 KOG4718 Non-SMC (structural ma 81.9 0.78 1.7E-05 35.9 1.4 44 71-117 181-224 (235)
119 KOG3113 Uncharacterized conser 81.8 1.7 3.6E-05 35.0 3.2 53 70-124 110-162 (293)
120 PF00628 PHD: PHD-finger; Int 80.5 1.1 2.4E-05 26.3 1.5 42 74-116 2-49 (51)
121 KOG4362 Transcriptional regula 79.0 0.47 1E-05 43.0 -0.8 48 71-122 21-71 (684)
122 PF10571 UPF0547: Uncharacteri 78.4 1.3 2.9E-05 22.9 1.1 23 73-97 2-24 (26)
123 PF07975 C1_4: TFIIH C1-like d 77.8 1.8 3.9E-05 26.1 1.8 43 74-116 2-50 (51)
124 PF15050 SCIMP: SCIMP protein 77.4 3.2 7E-05 29.6 3.2 23 7-29 14-36 (133)
125 KOG3005 GIY-YIG type nuclease 76.4 1.5 3.2E-05 35.5 1.5 49 71-119 182-242 (276)
126 PF13908 Shisa: Wnt and FGF in 76.3 2.5 5.3E-05 31.9 2.6 13 2-14 81-93 (179)
127 PF13719 zinc_ribbon_5: zinc-r 76.2 1.6 3.4E-05 24.4 1.2 26 73-98 4-36 (37)
128 KOG1815 Predicted E3 ubiquitin 75.5 1.8 3.9E-05 37.5 1.8 37 69-108 68-104 (444)
129 COG5109 Uncharacterized conser 75.5 2.2 4.7E-05 35.5 2.2 46 70-116 335-383 (396)
130 KOG4367 Predicted Zn-finger pr 74.9 1.4 3E-05 38.2 1.0 33 70-106 3-35 (699)
131 PF15102 TMEM154: TMEM154 prot 74.2 2.2 4.7E-05 31.5 1.7 7 100-106 128-134 (146)
132 TIGR00622 ssl1 transcription f 73.6 5.2 0.00011 28.2 3.4 46 71-116 55-110 (112)
133 PF14569 zf-UDP: Zinc-binding 72.4 5.6 0.00012 26.2 3.1 51 70-120 8-62 (80)
134 KOG2066 Vacuolar assembly/sort 72.0 1.6 3.4E-05 40.3 0.7 44 70-115 783-830 (846)
135 smart00132 LIM Zinc-binding do 70.3 5.2 0.00011 21.4 2.4 37 73-119 1-37 (39)
136 PF01363 FYVE: FYVE zinc finge 68.7 2.5 5.4E-05 26.5 0.9 36 70-105 8-43 (69)
137 PF06844 DUF1244: Protein of u 68.5 3 6.6E-05 26.5 1.2 13 96-108 11-23 (68)
138 PLN02189 cellulose synthase 67.5 6 0.00013 37.8 3.4 51 70-120 33-87 (1040)
139 cd00065 FYVE FYVE domain; Zinc 66.4 5.2 0.00011 23.9 2.0 35 72-106 3-37 (57)
140 PF00412 LIM: LIM domain; Int 65.6 6.2 0.00013 23.4 2.2 39 74-122 1-39 (58)
141 KOG3039 Uncharacterized conser 65.4 4 8.6E-05 32.8 1.6 34 70-107 42-75 (303)
142 PF07649 C1_3: C1-like domain; 65.4 5.5 0.00012 20.9 1.7 29 73-102 2-30 (30)
143 KOG0825 PHD Zn-finger protein 65.2 3.2 7E-05 38.5 1.2 55 70-124 95-158 (1134)
144 PF06024 DUF912: Nucleopolyhed 64.8 4.4 9.6E-05 27.8 1.6 22 3-24 65-86 (101)
145 PF13717 zinc_ribbon_4: zinc-r 63.2 4.7 0.0001 22.3 1.2 26 73-98 4-36 (36)
146 PF01102 Glycophorin_A: Glycop 60.5 10 0.00022 27.1 2.9 28 1-28 69-96 (122)
147 smart00064 FYVE Protein presen 60.3 8.6 0.00019 23.9 2.2 36 71-106 10-45 (68)
148 KOG3842 Adaptor protein Pellin 58.6 11 0.00024 31.4 3.1 51 69-120 339-414 (429)
149 PF02891 zf-MIZ: MIZ/SP-RING z 58.5 9.2 0.0002 22.7 2.0 42 72-117 3-49 (50)
150 KOG3579 Predicted E3 ubiquitin 58.4 6 0.00013 32.4 1.5 40 70-109 267-306 (352)
151 KOG3799 Rab3 effector RIM1 and 58.0 2.6 5.6E-05 30.8 -0.6 51 68-119 62-117 (169)
152 PLN02436 cellulose synthase A 57.9 11 0.00025 36.2 3.4 51 70-120 35-89 (1094)
153 KOG2807 RNA polymerase II tran 57.2 12 0.00027 31.2 3.2 66 51-117 309-375 (378)
154 PF14575 EphA2_TM: Ephrin type 56.1 12 0.00025 24.3 2.3 24 2-25 2-25 (75)
155 KOG1812 Predicted E3 ubiquitin 55.7 5.5 0.00012 34.0 0.9 44 71-115 306-351 (384)
156 PF04216 FdhE: Protein involve 55.0 1.4 3.1E-05 35.8 -2.6 46 71-117 172-219 (290)
157 PLN02195 cellulose synthase A 54.1 19 0.00041 34.4 4.2 52 70-121 5-60 (977)
158 PLN02638 cellulose synthase A 53.7 15 0.00033 35.3 3.5 50 71-120 17-70 (1079)
159 PF15176 LRR19-TM: Leucine-ric 53.3 17 0.00037 25.1 2.8 26 1-26 19-44 (102)
160 PLN02248 cellulose synthase-li 53.0 19 0.00041 34.9 4.0 35 92-126 149-183 (1135)
161 PF06906 DUF1272: Protein of u 52.5 29 0.00063 21.4 3.5 47 72-123 6-55 (57)
162 PF14979 TMEM52: Transmembrane 52.1 35 0.00076 25.2 4.5 10 19-28 42-51 (154)
163 PF06365 CD34_antigen: CD34/Po 51.2 13 0.00029 28.9 2.3 26 3-28 103-130 (202)
164 PF14311 DUF4379: Domain of un 50.8 10 0.00022 22.8 1.3 23 92-115 33-55 (55)
165 PF14169 YdjO: Cold-inducible 49.9 8.7 0.00019 23.9 0.9 16 109-124 39-54 (59)
166 PF10497 zf-4CXXC_R1: Zinc-fin 49.1 22 0.00047 24.6 2.9 47 71-117 7-69 (105)
167 PF15050 SCIMP: SCIMP protein 48.9 26 0.00056 25.1 3.3 28 2-29 13-40 (133)
168 PLN02915 cellulose synthase A 47.7 20 0.00044 34.4 3.4 51 70-120 14-68 (1044)
169 KOG1094 Discoidin domain recep 46.3 1.9E+02 0.0042 26.7 9.0 12 151-162 498-509 (807)
170 KOG2071 mRNA cleavage and poly 46.1 12 0.00026 33.6 1.6 35 69-105 511-556 (579)
171 PF15330 SIT: SHP2-interacting 45.3 47 0.001 23.1 4.1 17 3-19 4-20 (107)
172 KOG4218 Nuclear hormone recept 44.1 20 0.00044 30.3 2.5 15 69-83 13-27 (475)
173 PF15069 FAM163: FAM163 family 43.9 21 0.00045 26.2 2.3 25 2-26 8-32 (143)
174 PF13832 zf-HC5HC2H_2: PHD-zin 43.5 17 0.00038 24.8 1.8 35 70-105 54-88 (110)
175 PLN02400 cellulose synthase 43.0 20 0.00043 34.7 2.5 51 70-120 35-89 (1085)
176 PF07010 Endomucin: Endomucin; 42.8 64 0.0014 25.7 4.9 28 2-29 190-217 (259)
177 KOG2068 MOT2 transcription fac 42.8 48 0.001 27.7 4.5 48 72-120 250-298 (327)
178 PF04710 Pellino: Pellino; In 42.7 8.1 0.00018 33.1 0.0 44 71-118 277-337 (416)
179 PRK01844 hypothetical protein; 41.5 42 0.00091 21.7 3.1 21 5-25 11-31 (72)
180 KOG2979 Protein involved in DN 41.4 16 0.00034 29.5 1.4 41 71-114 176-218 (262)
181 PRK05978 hypothetical protein; 41.4 17 0.00036 26.9 1.5 27 91-122 37-65 (148)
182 PF07191 zinc-ribbons_6: zinc- 41.2 8.4 0.00018 24.8 -0.1 39 73-120 3-41 (70)
183 PF03107 C1_2: C1 domain; Int 41.1 18 0.00038 19.0 1.2 28 73-101 2-29 (30)
184 PF05191 ADK_lid: Adenylate ki 40.7 15 0.00032 20.4 0.9 32 89-122 3-34 (36)
185 PF11057 Cortexin: Cortexin of 40.3 34 0.00075 22.3 2.6 18 8-25 34-51 (81)
186 KOG4323 Polycomb-like PHD Zn-f 39.7 11 0.00025 32.9 0.4 55 70-124 167-230 (464)
187 KOG1538 Uncharacterized conser 39.6 14 0.00031 34.0 1.0 35 86-120 1043-1077(1081)
188 PF05454 DAG1: Dystroglycan (D 39.5 9.8 0.00021 31.3 0.0 13 2-14 150-162 (290)
189 COG3492 Uncharacterized protei 39.5 15 0.00032 25.0 0.9 13 96-108 42-54 (104)
190 PF11023 DUF2614: Protein of u 39.4 30 0.00065 24.4 2.4 17 106-122 82-98 (114)
191 PF04423 Rad50_zn_hook: Rad50 38.5 12 0.00025 22.5 0.2 13 111-123 22-34 (54)
192 KOG1729 FYVE finger containing 38.4 5.6 0.00012 32.6 -1.6 38 72-110 215-252 (288)
193 PF03672 UPF0154: Uncharacteri 38.4 58 0.0013 20.6 3.4 24 3-26 2-25 (64)
194 KOG2041 WD40 repeat protein [G 38.3 27 0.00058 32.6 2.5 47 69-119 1129-1184(1189)
195 PF05568 ASFV_J13L: African sw 38.0 31 0.00068 25.5 2.4 17 12-28 42-58 (189)
196 PF13771 zf-HC5HC2H: PHD-like 37.8 24 0.00051 23.0 1.7 34 70-104 35-68 (90)
197 PF02038 ATP1G1_PLM_MAT8: ATP1 37.7 67 0.0015 19.3 3.4 18 3-20 17-34 (50)
198 PF06750 DiS_P_DiS: Bacterial 37.7 39 0.00084 22.7 2.7 38 71-121 33-70 (92)
199 PRK00523 hypothetical protein; 37.6 52 0.0011 21.3 3.1 17 9-25 16-32 (72)
200 smart00647 IBR In Between Ring 37.5 11 0.00023 22.7 -0.0 19 87-105 40-58 (64)
201 PF11770 GAPT: GRB2-binding ad 36.9 7.7 0.00017 28.8 -0.9 18 3-20 14-31 (158)
202 PF04689 S1FA: DNA binding pro 36.9 48 0.001 21.0 2.8 21 4-24 19-39 (69)
203 PF07282 OrfB_Zn_ribbon: Putat 36.3 29 0.00063 21.5 1.8 34 71-104 28-63 (69)
204 PRK11088 rrmA 23S rRNA methylt 36.1 24 0.00052 28.1 1.7 25 72-97 3-27 (272)
205 PF02318 FYVE_2: FYVE-type zin 34.7 34 0.00074 23.9 2.2 35 70-104 53-88 (118)
206 PF07406 NICE-3: NICE-3 protei 34.6 49 0.0011 25.4 3.1 26 2-27 14-39 (186)
207 smart00531 TFIIE Transcription 33.5 46 0.00099 24.2 2.8 15 110-124 124-138 (147)
208 PF11980 DUF3481: Domain of un 33.4 1.4E+02 0.003 20.0 4.7 24 5-28 23-46 (87)
209 TIGR01562 FdhE formate dehydro 32.7 12 0.00026 30.9 -0.5 46 71-117 184-232 (305)
210 PF10577 UPF0560: Uncharacteri 32.4 60 0.0013 30.5 3.8 23 3-25 276-298 (807)
211 KOG0956 PHD finger protein AF1 31.9 16 0.00035 33.6 0.1 51 70-121 116-183 (900)
212 KOG4185 Predicted E3 ubiquitin 31.8 7.6 0.00017 31.4 -1.8 50 71-120 207-267 (296)
213 KOG4443 Putative transcription 31.8 28 0.0006 31.8 1.6 49 71-120 18-73 (694)
214 PF13908 Shisa: Wnt and FGF in 31.7 35 0.00077 25.5 2.0 14 5-18 80-93 (179)
215 KOG2789 Putative Zn-finger pro 30.8 39 0.00084 29.2 2.2 54 71-126 74-151 (482)
216 PF09723 Zn-ribbon_8: Zinc rib 30.3 14 0.0003 21.1 -0.4 24 92-117 10-34 (42)
217 PF03119 DNA_ligase_ZBD: NAD-d 30.2 25 0.00054 18.3 0.6 14 111-124 1-14 (28)
218 PF00130 C1_1: Phorbol esters/ 29.7 42 0.00092 19.5 1.7 34 70-104 10-45 (53)
219 PF05715 zf-piccolo: Piccolo Z 29.6 35 0.00076 21.3 1.3 13 109-121 2-14 (61)
220 PRK03564 formate dehydrogenase 29.4 25 0.00054 29.2 0.8 47 70-117 186-234 (309)
221 COG4357 Zinc finger domain con 29.3 44 0.00095 23.0 1.9 32 93-125 65-96 (105)
222 PF05605 zf-Di19: Drought indu 29.1 7.7 0.00017 23.2 -1.7 13 71-83 2-14 (54)
223 KOG0824 Predicted E3 ubiquitin 28.9 19 0.00042 29.7 0.1 47 70-119 104-150 (324)
224 KOG1512 PHD Zn-finger protein 28.7 26 0.00057 28.9 0.8 32 72-104 315-346 (381)
225 PF06667 PspB: Phage shock pro 28.7 1.2E+02 0.0027 19.7 3.9 16 4-19 7-22 (75)
226 PF06937 EURL: EURL protein; 27.8 60 0.0013 26.4 2.7 20 97-116 57-77 (285)
227 PF12072 DUF3552: Domain of un 27.5 91 0.002 23.9 3.7 19 2-20 2-20 (201)
228 cd00729 rubredoxin_SM Rubredox 27.2 36 0.00079 18.4 1.0 8 110-117 19-26 (34)
229 KOG1973 Chromatin remodeling p 27.0 14 0.00031 29.9 -1.0 28 92-119 239-269 (274)
230 TIGR00686 phnA alkylphosphonat 26.9 40 0.00087 23.6 1.4 11 72-82 3-13 (109)
231 PF12877 DUF3827: Domain of un 26.8 63 0.0014 29.6 2.9 25 1-25 271-295 (684)
232 KOG2231 Predicted E3 ubiquitin 26.8 51 0.0011 30.3 2.4 45 73-121 2-53 (669)
233 KOG1815 Predicted E3 ubiquitin 26.5 22 0.00048 30.8 0.0 37 71-108 226-267 (444)
234 PF15353 HECA: Headcase protei 26.5 39 0.00085 23.6 1.2 13 93-105 40-52 (107)
235 PF11395 DUF2873: Protein of u 26.5 1.2E+02 0.0026 17.0 3.0 10 14-23 21-30 (43)
236 PF05502 Dynactin_p62: Dynacti 26.4 61 0.0013 28.6 2.7 39 71-122 26-65 (483)
237 PF11119 DUF2633: Protein of u 26.2 1.5E+02 0.0032 18.5 3.6 11 5-15 13-23 (59)
238 smart00109 C1 Protein kinase C 25.4 69 0.0015 17.8 2.1 33 71-104 11-44 (49)
239 PF09943 DUF2175: Uncharacteri 25.3 57 0.0012 22.6 1.9 32 73-106 4-35 (101)
240 PRK11827 hypothetical protein; 24.9 29 0.00063 21.6 0.3 20 103-122 2-21 (60)
241 COG1545 Predicted nucleic-acid 24.2 50 0.0011 24.0 1.5 22 90-119 32-53 (140)
242 cd00350 rubredoxin_like Rubred 24.1 49 0.0011 17.6 1.1 10 108-117 16-25 (33)
243 COG3364 Zn-ribbon containing p 23.2 28 0.0006 24.2 0.0 9 92-100 7-15 (112)
244 COG5627 MMS21 DNA repair prote 23.1 41 0.0009 26.9 1.0 40 71-113 189-230 (275)
245 PF08274 PhnA_Zn_Ribbon: PhnA 23.0 41 0.00089 17.9 0.7 24 73-96 4-28 (30)
246 KOG1245 Chromatin remodeling c 22.8 31 0.00067 34.5 0.3 49 70-119 1107-1159(1404)
247 PF02480 Herpes_gE: Alphaherpe 22.1 30 0.00064 30.1 0.0 10 19-28 372-381 (439)
248 PRK06266 transcription initiat 21.9 1.4E+02 0.0029 22.6 3.6 18 106-123 133-150 (178)
249 PF11174 DUF2970: Protein of u 21.9 1.4E+02 0.0031 18.2 3.0 19 2-20 34-52 (56)
250 COG4847 Uncharacterized protei 21.5 91 0.002 21.4 2.2 36 71-108 6-41 (103)
251 PRK10220 hypothetical protein; 21.1 73 0.0016 22.4 1.8 11 72-82 4-14 (111)
252 PRK00241 nudC NADH pyrophospha 21.0 74 0.0016 25.5 2.1 24 99-122 89-112 (256)
253 TIGR02300 FYDLN_acid conserved 20.7 65 0.0014 23.3 1.5 14 109-122 26-39 (129)
254 PF15168 TRIQK: Triple QxxK/R 20.7 1.9E+02 0.0041 19.0 3.5 17 6-22 55-71 (79)
255 PF06677 Auto_anti-p27: Sjogre 20.7 85 0.0018 17.9 1.7 17 105-121 13-29 (41)
256 PF05961 Chordopox_A13L: Chord 20.5 2.4E+02 0.0053 18.0 4.3 15 6-20 5-19 (68)
257 cd00730 rubredoxin Rubredoxin; 20.4 99 0.0021 18.4 2.0 12 72-83 2-13 (50)
258 COG5415 Predicted integral mem 20.3 41 0.00089 26.5 0.5 28 92-119 194-224 (251)
259 PF06422 PDR_CDR: CDR ABC tran 20.2 1.8E+02 0.0039 19.7 3.6 22 4-25 53-74 (103)
260 PF07227 DUF1423: Protein of u 20.2 74 0.0016 27.8 2.0 33 72-105 129-164 (446)
261 KOG4021 Mitochondrial ribosoma 20.1 48 0.001 25.8 0.8 27 99-125 97-124 (239)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.3e-20 Score=152.26 Aligned_cols=79 Identities=34% Similarity=0.841 Sum_probs=67.1
Q ss_pred CCCCCCHHHhhcCCeEeeccccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCcccccc
Q 042990 44 PNKGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIET 122 (165)
Q Consensus 44 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 122 (165)
...+..+..++++|...|......... +.|+||+|+|+.|+++|.|| |+|.||..||+.||.. +..||+||.++...
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 456778899999999999986554433 79999999999999999999 9999999999999955 56699999988765
Q ss_pred cc
Q 042990 123 CQ 124 (165)
Q Consensus 123 ~~ 124 (165)
..
T Consensus 281 ~~ 282 (348)
T KOG4628|consen 281 SG 282 (348)
T ss_pred CC
Confidence 43
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.64 E-value=6e-17 Score=96.10 Aligned_cols=44 Identities=52% Similarity=1.235 Sum_probs=40.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
++|+||+++|.+++.+..++ |+|.||.+||..|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999998 999999999999999899999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.46 E-value=5.9e-14 Score=92.02 Aligned_cols=47 Identities=34% Similarity=0.877 Sum_probs=36.1
Q ss_pred CCCcCccccccccCC---------CeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 70 LDTECVICLSEFAAG---------DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~---------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
.++.|+||+++|.+. +....+..|||.||..||.+|++.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 456799999999331 23333334999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.45 E-value=6.6e-14 Score=110.51 Aligned_cols=76 Identities=36% Similarity=0.673 Sum_probs=57.0
Q ss_pred CCCCHHHhhcCCeEeeccc-cccCCCCCcCccccccccCCCe----eeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 46 KGIKQKALKTFPVVSYSAE-LNLAGLDTECVICLSEFAAGDR----LRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 46 ~~~~~~~~~~lp~~~~~~~-~~~~~~~~~C~ICl~~~~~~~~----~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.+..+..++.+|....... ......+.+|+||++.+.+.+. ...++.|+|.||.+||.+|++.+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4556778888888765542 2223457899999999876431 2344459999999999999999999999999876
Q ss_pred c
Q 042990 121 E 121 (165)
Q Consensus 121 ~ 121 (165)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 4
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-12 Score=107.21 Aligned_cols=71 Identities=27% Similarity=0.665 Sum_probs=54.2
Q ss_pred HHHhhcCCeEeeccccccCCCCCcCccccccc-cCC---------CeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 50 QKALKTFPVVSYSAELNLAGLDTECVICLSEF-AAG---------DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 50 ~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~-~~~---------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
++..+.++.++..+. ..+|..|+||||++ ..+ .++..+| |||+||-+|++-|+.++.+||.||.++
T Consensus 269 kdl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 269 KDLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hHHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 455555665555543 23678999999994 433 3567898 999999999999999999999999996
Q ss_pred ccccc
Q 042990 120 IETCQ 124 (165)
Q Consensus 120 ~~~~~ 124 (165)
+-...
T Consensus 345 ifd~~ 349 (491)
T COG5243 345 IFDQS 349 (491)
T ss_pred ccccC
Confidence 65433
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-12 Score=105.25 Aligned_cols=51 Identities=51% Similarity=1.158 Sum_probs=46.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh-cCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 121 (165)
.+.+|+|||+.|..+++++.+| |.|.||..|++.|+. -+..||+||..+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4589999999999999999999 999999999999996 57789999998875
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.3e-12 Score=100.36 Aligned_cols=50 Identities=30% Similarity=0.713 Sum_probs=44.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+....|.+||+..++ +..+| |||+||..||..|...+..||+||..+.++
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 466899999999877 67888 999999999999999999999999988764
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.23 E-value=7.7e-12 Score=83.42 Aligned_cols=52 Identities=42% Similarity=0.839 Sum_probs=41.5
Q ss_pred CCCcCccccccccC--------C-CeeeecCCCCccccHhhHHHHHhc---CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAA--------G-DRLRLLPKCNHGFHVRCIDKWLSS---HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~--------~-~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~ 121 (165)
.|+.|.||+..|+. + +.+.++..|+|.||.+||.+|+.. +..||+||+.+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 48899999999963 2 234455679999999999999964 5679999998753
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.22 E-value=3.2e-11 Score=92.02 Aligned_cols=49 Identities=35% Similarity=0.746 Sum_probs=40.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----------------CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----------------HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~~~~ 121 (165)
+.+.+|+||++.+++ ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 356899999999876 46676 9999999999999842 3479999998865
No 10
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.17 E-value=1.6e-11 Score=80.13 Aligned_cols=53 Identities=30% Similarity=0.632 Sum_probs=38.8
Q ss_pred CcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccccc
Q 042990 72 TECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 72 ~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 124 (165)
+.|+-|...+.+++ .+.....|+|.||.+||.+||..+..||++|+.+.-++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~ 85 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADG 85 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEecc
Confidence 33444444333433 455566799999999999999999999999998876543
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.15 E-value=3.3e-11 Score=73.13 Aligned_cols=46 Identities=37% Similarity=0.843 Sum_probs=39.8
Q ss_pred CCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
+..|.||++...+ +..+| |||. |+..|+.+|++.+..||+||.++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999999766 77888 9999 999999999999999999999875
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.10 E-value=8.6e-11 Score=68.49 Aligned_cols=44 Identities=55% Similarity=1.194 Sum_probs=36.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCL 119 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~ 119 (165)
+|+||++.+. +.....+ |+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 2355555 9999999999999976 77899998764
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.08 E-value=9.8e-11 Score=67.48 Aligned_cols=39 Identities=41% Similarity=1.063 Sum_probs=32.5
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
|+||++.+.+ .+..++ |||.|+.+||.+|++++..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 7999999887 335676 99999999999999888899998
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.99 E-value=3.1e-10 Score=87.96 Aligned_cols=53 Identities=32% Similarity=0.741 Sum_probs=39.9
Q ss_pred CCCCCcCccccccccCC-----CeeeecCCCCccccHhhHHHHHhcC------CCCCCCCcccc
Q 042990 68 AGLDTECVICLSEFAAG-----DRLRLLPKCNHGFHVRCIDKWLSSH------SSCPKCRHCLI 120 (165)
Q Consensus 68 ~~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~~~ 120 (165)
.+.+.+|+||||..-.. .....++.|+|.||..||..|.+.+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34678999999986332 1234565699999999999998643 35999998765
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-10 Score=100.83 Aligned_cols=50 Identities=40% Similarity=1.012 Sum_probs=44.6
Q ss_pred CCCcCccccccccCCCe--eeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDR--LRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~--~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.+..|+||+|++..+.. +..++ |+|+||..|+..|++++.+||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 47899999999987654 77888 9999999999999999999999999444
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-10 Score=83.52 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=41.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
+.-..|+|||+.+..... ... +|||+||+.||..-++....||+|+..+.
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsT-kCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VST-KCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccc-ccc-ccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 344789999999987433 234 59999999999999999999999997554
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=7.8e-10 Score=64.78 Aligned_cols=38 Identities=39% Similarity=0.955 Sum_probs=29.5
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHhcC----CCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH----SSCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~C 115 (165)
|+||++-|.+ +..++ |||.|+..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 78888 99999999999999543 469987
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.92 E-value=9.3e-10 Score=65.04 Aligned_cols=44 Identities=34% Similarity=0.850 Sum_probs=38.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
.|.||+++|.+.....+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666788887 9999999999999866778999984
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.5e-10 Score=86.16 Aligned_cols=50 Identities=28% Similarity=0.594 Sum_probs=40.9
Q ss_pred CCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc---CCCCCCCCccccc
Q 042990 68 AGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS---HSSCPKCRHCLIE 121 (165)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~ 121 (165)
.....+|.||||.-++ ++++. |||.||+-||.+|+.. .+.||+||..+-.
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 3567899999999766 56666 9999999999999954 4569999987764
No 20
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.8e-10 Score=73.77 Aligned_cols=51 Identities=37% Similarity=0.799 Sum_probs=40.4
Q ss_pred CCCcCccccccccC---------CCeeeecCCCCccccHhhHHHHHhc---CCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAA---------GDRLRLLPKCNHGFHVRCIDKWLSS---HSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~---------~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~ 120 (165)
.++.|.||+-.|+. ++.+.++..|.|.||.+||.+|+.. +..||+||+.+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 56799999999853 3345566679999999999999954 456999998765
No 21
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.4e-10 Score=76.12 Aligned_cols=53 Identities=26% Similarity=0.633 Sum_probs=41.2
Q ss_pred CCcCccccccc-------------cCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccccc
Q 042990 71 DTECVICLSEF-------------AAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 71 ~~~C~ICl~~~-------------~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 123 (165)
-+.|+||+.-+ ..++.......|+|.||.+||.+|++++..||+|..+..-+.
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQR 111 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEee
Confidence 35677776543 234556667779999999999999999999999988876544
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.86 E-value=2.3e-09 Score=62.14 Aligned_cols=39 Identities=46% Similarity=1.145 Sum_probs=32.9
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHh--cCCCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS--SHSSCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~C 115 (165)
|+||++.+... ...++ |||.|+..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 78999998773 24676 999999999999997 56679988
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.85 E-value=2.5e-09 Score=60.07 Aligned_cols=38 Identities=47% Similarity=1.164 Sum_probs=32.1
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHh-cCCCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~C 115 (165)
|+||++... ....++ |+|.||..|+..|++ .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999843 367777 999999999999997 66779987
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.78 E-value=7.6e-09 Score=65.21 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=40.1
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..|+||++.+++ +..++ |||.|.+.||..|++.+..||.|+..+..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999999987 46677 99999999999999888899999987743
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.3e-08 Score=85.96 Aligned_cols=49 Identities=35% Similarity=0.654 Sum_probs=42.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
+....|+||++.|.+ +..++ |||.||..||..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456899999999976 45677 99999999999999888889999997654
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.7e-09 Score=82.16 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCC-------eeeecCCCCccccHhhHHHHH--hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGD-------RLRLLPKCNHGFHVRCIDKWL--SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~-------~~~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~~~ 120 (165)
+|..|+||-..+.... ....+. |+|+||..||.-|- .++.+||+|+..+-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 5789999999986544 566787 99999999999995 67889999987554
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.7e-08 Score=78.83 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=42.1
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHH-HHhcCCC-CCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK-WLSSHSS-CPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~~~~~ 122 (165)
..|..|+||++.... ...++ |||+|+..||.. |=+++.. ||+||+...+.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 357899999999766 67777 999999999999 8766555 99999988764
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-08 Score=82.49 Aligned_cols=51 Identities=33% Similarity=0.831 Sum_probs=38.8
Q ss_pred CCCcCccccccccCCC----------ee----eecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGD----------RL----RLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~----------~~----~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
...+|+|||..+.--. .+ ..+| |.|+||..|+.+|... +-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999975311 11 1346 9999999999999984 5589999998864
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.47 E-value=1.6e-07 Score=56.81 Aligned_cols=42 Identities=26% Similarity=0.783 Sum_probs=31.7
Q ss_pred cCccccccccCCCeeeecCCCC-----ccccHhhHHHHHhc--CCCCCCCC
Q 042990 73 ECVICLSEFAAGDRLRLLPKCN-----HGFHVRCIDKWLSS--HSSCPKCR 116 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 116 (165)
.|.||++..++ +.....| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~-~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDE-GDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCC-CCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994434 3444677 75 89999999999943 55899995
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.41 E-value=6.2e-08 Score=62.89 Aligned_cols=50 Identities=32% Similarity=0.786 Sum_probs=23.1
Q ss_pred CCcCcccccccc-CCCeee-ec--CCCCccccHhhHHHHHhc---CC--------CCCCCCcccc
Q 042990 71 DTECVICLSEFA-AGDRLR-LL--PKCNHGFHVRCIDKWLSS---HS--------SCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~-~~~~~~-~l--~~C~H~FH~~Ci~~Wl~~---~~--------~CP~CR~~~~ 120 (165)
+.+|.||.+.+. .++.+. .. +.|++.||..|+.+||+. .+ .||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999865 333322 22 269999999999999953 11 3999998775
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.37 E-value=2.9e-07 Score=54.04 Aligned_cols=33 Identities=33% Similarity=0.768 Sum_probs=21.6
Q ss_pred CccccccccC-CCeeeecCCCCccccHhhHHHHHhc
Q 042990 74 CVICLSEFAA-GDRLRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 74 C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
|+||++ |.. ...+.+|+ |||.|+++|+.+|+++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhc
Confidence 899999 754 44678898 9999999999999964
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.6e-07 Score=79.24 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=38.5
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC-----CCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH-----SSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~ 121 (165)
+..|+||++.... ...+. |||+||..||.++|... ..||+||..+-.
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999998654 44555 99999999999998543 469999998776
No 33
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.6e-07 Score=75.99 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=37.1
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc---CCCCCCCCccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS---HSSCPKCRHCL 119 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~ 119 (165)
.-.|.||-+-+.....+.....|||+||..|+.+||.. ++.||.|+-.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 34799995555555556556579999999999999965 45799998333
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.26 E-value=3.3e-07 Score=73.78 Aligned_cols=52 Identities=27% Similarity=0.502 Sum_probs=44.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 124 (165)
+....|-||.+.+.. +..++ |||-||.-||...|..+..||+||.+.-+...
T Consensus 23 Ds~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 23 DSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred hhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 345789999999877 45666 99999999999999999999999998776544
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.25 E-value=3.2e-07 Score=77.48 Aligned_cols=48 Identities=38% Similarity=0.888 Sum_probs=39.4
Q ss_pred CCCcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
+-..|+||||.|...- .++... |.|.||..|+..| ...+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 3478999999998754 344455 9999999999999 6778999998765
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.24 E-value=2.3e-07 Score=84.32 Aligned_cols=52 Identities=37% Similarity=0.809 Sum_probs=39.2
Q ss_pred CCCCcCccccccccCCC---eeeecCCCCccccHhhHHHHHhc--CCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGD---RLRLLPKCNHGFHVRCIDKWLSS--HSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 120 (165)
+..++|+||...+..-+ .-...+.|.|.||..|+..|++. +.+||+||.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 46689999998875211 12334569999999999999954 567999997764
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=1.1e-06 Score=71.75 Aligned_cols=52 Identities=25% Similarity=0.598 Sum_probs=38.1
Q ss_pred CCcCcccccc-ccCCC-eeeecCCCCccccHhhHHHHH-hcCCCCCCCCccccccc
Q 042990 71 DTECVICLSE-FAAGD-RLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIETC 123 (165)
Q Consensus 71 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~~ 123 (165)
+..|++|+.. |-+.+ ..-..+ |||.||..|++..| .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5689999996 33323 223334 99999999999977 44568999998877643
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.22 E-value=1.1e-06 Score=57.41 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=38.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 122 (165)
+...|+|+.+-|.+ +..++ +||.|.+.+|..|++. +..||.|+..+...
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 35689999999998 77888 9999999999999977 88999998877653
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=3.8e-07 Score=74.76 Aligned_cols=51 Identities=33% Similarity=0.698 Sum_probs=44.5
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQK 125 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~ 125 (165)
-..|.||.+-|.. +..+| |+|.||.-||..+|+.+..||.|+..+-+.+.+
T Consensus 23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 4689999999887 56777 999999999999999999999999988776543
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.11 E-value=7.7e-07 Score=56.22 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=24.8
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQK 125 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~ 125 (165)
-..|++|.+-++. +..+..|.|+|++.||..-+.. .||+|+.+.-.++-+
T Consensus 7 lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHH
Confidence 3579999999877 4555569999999999885543 499999887665443
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.9e-06 Score=71.07 Aligned_cols=49 Identities=37% Similarity=0.866 Sum_probs=39.3
Q ss_pred CCCcCcccccccc-CCCeeeecCCCCccccHhhHHHHHh--cCCCCCCCCcc
Q 042990 70 LDTECVICLSEFA-AGDRLRLLPKCNHGFHVRCIDKWLS--SHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~-~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~ 118 (165)
....|+||+++|. .+++....++|||.|..+||..|+- ....||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3578999999997 4566666667999999999999993 24469999764
No 42
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.7e-06 Score=68.45 Aligned_cols=44 Identities=39% Similarity=0.834 Sum_probs=39.1
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
.....|+||++.|... ..++ |+|.|+..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3567999999999985 7887 999999999999988667899999
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.2e-06 Score=72.25 Aligned_cols=55 Identities=33% Similarity=0.593 Sum_probs=45.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccccccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIETCQKI 126 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~~~~~ 126 (165)
..+..|+|||+-++. .+..+.|.|-||.+||..-+ ..++.||.||..+.......
T Consensus 41 ~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 457899999999877 45555799999999999998 46889999999998754433
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=8.2e-06 Score=67.41 Aligned_cols=50 Identities=36% Similarity=0.693 Sum_probs=42.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCc-cccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNH-GFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
++..+|.|||.+-.+ +.+|| |.| -.|..|-+..--..+.||+||+++.+.
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 346799999999877 78999 999 689999998655677899999998764
No 45
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.6e-05 Score=62.08 Aligned_cols=58 Identities=28% Similarity=0.667 Sum_probs=47.2
Q ss_pred cccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--------CCCCCCCCcccccc
Q 042990 63 AELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--------HSSCPKCRHCLIET 122 (165)
Q Consensus 63 ~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~~~~~ 122 (165)
+...+.+.+..|..|-..+..++.+|.. |-|.||..|+++|-.. +..||.|..++++.
T Consensus 42 qWL~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 42 QWLQDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred HHHhhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 3444455678999999999999998875 9999999999999633 44699999988854
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.72 E-value=3e-05 Score=65.14 Aligned_cols=51 Identities=29% Similarity=0.662 Sum_probs=40.3
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHH-h-cCCCCCCCCcccccccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-S-SHSSCPKCRHCLIETCQKI 126 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~-~~~~CP~CR~~~~~~~~~~ 126 (165)
..|-||-|.=++ +..-| |||..|..|+..|- . .+.+||.||..+.-.+.-+
T Consensus 370 eLCKICaendKd---vkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAENDKD---VKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhccCCC---ccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 469999887444 78888 99999999999996 2 3778999999887554433
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.5e-05 Score=64.46 Aligned_cols=48 Identities=29% Similarity=0.542 Sum_probs=39.9
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIET 122 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~ 122 (165)
+.+|+||+....- +..++ |+|.|+-.||.--+ +.+.+|++||.++.+.
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 5799999998654 57787 99999999999876 4566799999998864
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.65 E-value=8.7e-06 Score=73.06 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=37.6
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..|++|+..+.++.....-+ |+|.||.+||..|-+...+||+||..+.+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 34666666655544343444 99999999999999999999999987764
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3e-05 Score=64.56 Aligned_cols=51 Identities=39% Similarity=0.914 Sum_probs=38.6
Q ss_pred CCCCcCccccccccCCC----eeeecCCCCccccHhhHHHHH--hc-----CCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGD----RLRLLPKCNHGFHVRCIDKWL--SS-----HSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~~ 119 (165)
..+.+|.|||+...+.. ....+|+|.|.|+..||..|- ++ .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 35789999999976533 122346799999999999997 33 36799999853
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.62 E-value=2.8e-05 Score=65.07 Aligned_cols=46 Identities=39% Similarity=0.936 Sum_probs=37.7
Q ss_pred CCCcCccccccccCC-CeeeecCCCCccccHhhHHHHHhc--CCCCCCCC
Q 042990 70 LDTECVICLSEFAAG-DRLRLLPKCNHGFHVRCIDKWLSS--HSSCPKCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 116 (165)
-+..|..|-+.+... +..-.+| |.|+||..|+...+.+ .++||.||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 456799999998643 4566788 9999999999999944 55899998
No 51
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.48 E-value=6.8e-05 Score=46.63 Aligned_cols=42 Identities=24% Similarity=0.592 Sum_probs=27.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--CCCCCC
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--HSSCPK 114 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~ 114 (165)
....|+|.+..|++ .++... |+|.|-++.|.+|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 45789999999987 244444 9999999999999943 446998
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.47 E-value=2.6e-05 Score=63.19 Aligned_cols=53 Identities=30% Similarity=0.770 Sum_probs=43.6
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-----------------------CCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-----------------------HSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----------------------~~~CP~CR~~~~~~ 122 (165)
.....|.|||--|.+++....+. |.|.||..|+.++|.. +..||+||..+.-.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 35678999999999999888888 9999999999988622 11399999988754
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=5e-05 Score=68.06 Aligned_cols=49 Identities=22% Similarity=0.603 Sum_probs=39.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~ 122 (165)
.-..|+.|-+..++ .... .|+|+||..|+..-+ -+++.||.|-..+-..
T Consensus 642 ~~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34679999988777 4444 499999999999999 4577899998877654
No 54
>PHA02862 5L protein; Provisional
Probab=97.39 E-value=0.00014 Score=53.19 Aligned_cols=48 Identities=19% Similarity=0.535 Sum_probs=35.3
Q ss_pred CCcCccccccccCCCeeeecCCC---CccccHhhHHHHHh--cCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKC---NHGFHVRCIDKWLS--SHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C---~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~ 121 (165)
++.|-||+++-++. ..-.. | ...-|.+|+.+|++ ++..|+.|+.++.-
T Consensus 2 ~diCWIC~~~~~e~--~~PC~-C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCG-CNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC--ccccc-ccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899999986443 22222 4 26899999999994 46689999998764
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.38 E-value=5.8e-05 Score=54.56 Aligned_cols=35 Identities=23% Similarity=0.581 Sum_probs=29.9
Q ss_pred CCcCccccccccCCCeeeecCCCC------ccccHhhHHHHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCN------HGFHVRCIDKWL 106 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~------H~FH~~Ci~~Wl 106 (165)
..+|.||++.+.+++.++.++ || |+||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 579999999999866666666 66 999999999994
No 56
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=5.2e-05 Score=46.31 Aligned_cols=47 Identities=28% Similarity=0.568 Sum_probs=33.8
Q ss_pred CCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHh-cCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLS-SHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~~~ 120 (165)
-+++|.||+|.--+ . ++-.|||+ .+-.|-.+.++ .+..||.||+++.
T Consensus 6 ~~dECTICye~pvd--s--VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVD--S--VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcch--H--HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 35899999987443 1 23349995 56778766655 6788999999874
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00017 Score=61.19 Aligned_cols=49 Identities=33% Similarity=0.825 Sum_probs=42.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..+.+|.||+.-+.+ +..+| |||.|+..||.+-+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 456899999888877 67777 99999999999987878889999999986
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.17 E-value=0.00028 Score=67.35 Aligned_cols=64 Identities=27% Similarity=0.599 Sum_probs=45.9
Q ss_pred CCeEeeccccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCC----------CCCCCCcccc
Q 042990 56 FPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHS----------SCPKCRHCLI 120 (165)
Q Consensus 56 lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~----------~CP~CR~~~~ 120 (165)
+|-+.-.......+.|+.|-||..+--.....+.+. |+|+||.+|..+-|.++. +||+|+..+.
T Consensus 3471 LPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3471 LPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 343333333334467899999998865555677887 999999999988764432 5999998765
No 59
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.12 E-value=0.00049 Score=51.10 Aligned_cols=50 Identities=24% Similarity=0.581 Sum_probs=36.2
Q ss_pred CCCCcCccccccccCCCeeeecC-CCCc---cccHhhHHHHHh--cCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP-KCNH---GFHVRCIDKWLS--SHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H---~FH~~Ci~~Wl~--~~~~CP~CR~~~~~~ 122 (165)
..+..|-||+++..+ .. .| .|.. ..|.+|+.+|+. +...|+.|+..+.-.
T Consensus 6 ~~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 357899999998543 22 24 2443 669999999994 355799999887654
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.12 E-value=0.00026 Score=60.19 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=42.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+.+..|++|+..+.+.-.. . +|||.|+..|+..|+..+..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchh
Confidence 4678999999999874221 3 4999999999999998899999998877754
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.98 E-value=0.00098 Score=55.30 Aligned_cols=70 Identities=23% Similarity=0.404 Sum_probs=51.1
Q ss_pred CCCHHHhhcCCeEeeccccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHH--HhcCCCCCCCCcccc
Q 042990 47 GIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW--LSSHSSCPKCRHCLI 120 (165)
Q Consensus 47 ~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W--l~~~~~CP~CR~~~~ 120 (165)
...+-.+..-|.........+.++...|-||-+.+.- ..++| |+|..+--|--+. |-+++.||.||...-
T Consensus 37 kqkKNnlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 37 KQKKNNLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred hccccccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3444455556666666655566677899999988654 56788 9999998887765 356889999998654
No 62
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.90 E-value=0.0007 Score=40.35 Aligned_cols=41 Identities=27% Similarity=0.853 Sum_probs=26.0
Q ss_pred CccccccccCCCeeeecC-CCC---ccccHhhHHHHHh--cCCCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLP-KCN---HGFHVRCIDKWLS--SHSSCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~-~C~---H~FH~~Ci~~Wl~--~~~~CP~C 115 (165)
|-||+++-+.++ ....| .|. ...|..|+.+|+. ++..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877665 23344 244 3889999999995 45678887
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.86 E-value=0.00048 Score=47.44 Aligned_cols=34 Identities=26% Similarity=0.694 Sum_probs=27.9
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
..+..|++|...+.. ......| |||+||..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEecccccC
Confidence 356789999999987 5566777 999999999753
No 64
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.85 E-value=0.00039 Score=53.46 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=37.7
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
..|.||..+|+. +++.. |||.||..|...-++....|-+|-...
T Consensus 197 F~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 479999999987 55665 999999999999889999999996543
No 65
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00036 Score=51.96 Aligned_cols=30 Identities=43% Similarity=0.855 Sum_probs=27.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHh
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVR 100 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~ 100 (165)
..-+|.||||+++.++++..+| |-.+||+.
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 4578999999999999999999 99999973
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.60 E-value=0.0018 Score=38.70 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=22.4
Q ss_pred CccccccccCCC-eeeecCCCCccccHhhHHHHHh-cCCCCCCCCccc
Q 042990 74 CVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCL 119 (165)
Q Consensus 74 C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~ 119 (165)
|++|.+++...+ ...-.+ |++.++..|...-+. .+..||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 333344 889999999988775 477899999864
No 67
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.56 E-value=0.0012 Score=60.12 Aligned_cols=51 Identities=31% Similarity=0.711 Sum_probs=38.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-------CCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-------HSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~~ 119 (165)
...++|.||.+.+.....+-....|-|+||..||..|-++ ...||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3558999999999876544444458899999999999743 12499997433
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.52 E-value=0.001 Score=57.98 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=37.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-----CCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-----HSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~~~ 120 (165)
....+|.+|.++-++ .+... |.|.||+-||.+++.. +.+||+|-..+.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 345789999998665 56666 9999999999998732 568999966554
No 69
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.49 E-value=0.0008 Score=55.27 Aligned_cols=51 Identities=25% Similarity=0.601 Sum_probs=41.6
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.....|.+|..=|-+..++. .|-|-||+.||...|....+||+|...+...
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 45689999988777643332 3999999999999998899999998877755
No 70
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0022 Score=48.59 Aligned_cols=29 Identities=31% Similarity=0.925 Sum_probs=23.7
Q ss_pred CCCccccHhhHHHHHhcC----C-------CCCCCCcccc
Q 042990 92 KCNHGFHVRCIDKWLSSH----S-------SCPKCRHCLI 120 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~----~-------~CP~CR~~~~ 120 (165)
+||.-||.-|+..||+.- . .||+|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 599999999999999652 1 3999987764
No 71
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.28 E-value=0.0028 Score=37.07 Aligned_cols=41 Identities=32% Similarity=0.765 Sum_probs=23.5
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHhcCC--CCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHS--SCPKC 115 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~C 115 (165)
|.+|.+-...|....... |+-.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777776665554444 999999999999996655 69987
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0049 Score=49.00 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=45.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.-+.|++|.+.+.+.-.+..+..|||+|..+|+...++....||+|-.++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3468999999999987777777799999999999999999999999877765
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.021 Score=47.11 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=37.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
.....|++|+..-.++..+ .--|-+||-.||..+++++..||+--.+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl---~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVL---EVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceE---EecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3567899999998774222 22689999999999999999999864443
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0068 Score=50.45 Aligned_cols=46 Identities=28% Similarity=0.566 Sum_probs=34.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...+.|.||+++.++ ...+| |||+-+ |..-- +...+||+||..+..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 356899999999877 67788 999965 55443 445569999987753
No 75
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.66 E-value=0.015 Score=35.64 Aligned_cols=35 Identities=29% Similarity=0.765 Sum_probs=30.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
....|.+|-++|.+++.+.+.+.||-.+|++|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35689999999998888889999999999999654
No 76
>PHA03096 p28-like protein; Provisional
Probab=95.56 E-value=0.0071 Score=49.36 Aligned_cols=48 Identities=23% Similarity=0.557 Sum_probs=33.8
Q ss_pred CcCccccccccCCC----eeeecCCCCccccHhhHHHHHhc---CCC---CCCCCccc
Q 042990 72 TECVICLSEFAAGD----RLRLLPKCNHGFHVRCIDKWLSS---HSS---CPKCRHCL 119 (165)
Q Consensus 72 ~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~Wl~~---~~~---CP~CR~~~ 119 (165)
..|.||++...... .-..++.|.|.|+..||..|... ... ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 68999999976432 23356679999999999999743 223 55555544
No 77
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0065 Score=49.36 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=38.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
..|-||...|.. +++.. |+|.|+..|...=+++...|.+|-+...
T Consensus 242 f~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccc---chhhc-CCceeehhhhccccccCCcceecccccc
Confidence 459999999987 56665 9999999999998888889999976544
No 78
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.014 Score=47.57 Aligned_cols=48 Identities=35% Similarity=0.719 Sum_probs=39.2
Q ss_pred CCcCccccccccCCC---eeeecCCCCccccHhhHHHHHh-cCCCCCCCCccc
Q 042990 71 DTECVICLSEFAAGD---RLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCL 119 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~ 119 (165)
-..|-||-++|+.++ .++.+. |||.|+..|+..-+. ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 358999999998653 566776 999999999998774 455799999985
No 79
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.05 E-value=0.031 Score=46.96 Aligned_cols=52 Identities=21% Similarity=0.535 Sum_probs=33.9
Q ss_pred CCCCcCccccccccCCC-------------------eeeecCCCCccccHhhHHHHHhcCC-------------CCCCCC
Q 042990 69 GLDTECVICLSEFAAGD-------------------RLRLLPKCNHGFHVRCIDKWLSSHS-------------SCPKCR 116 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~-------------------~~~~l~~C~H~FH~~Ci~~Wl~~~~-------------~CP~CR 116 (165)
++.+.|.-|+..-.+-. ...... |.-++|.+|+.+||..+. .||+||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~-CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCY-CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCcccc-ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 45678999998743210 111222 556788899999993322 499999
Q ss_pred ccccc
Q 042990 117 HCLIE 121 (165)
Q Consensus 117 ~~~~~ 121 (165)
+.+--
T Consensus 348 a~FCi 352 (358)
T PF10272_consen 348 AKFCI 352 (358)
T ss_pred cccee
Confidence 97653
No 80
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.013 Score=49.64 Aligned_cols=37 Identities=27% Similarity=0.736 Sum_probs=31.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS 107 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 107 (165)
.-..|.||+++.........+| |+|+|++.|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence 3578999999976667788888 999999999999983
No 81
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.011 Score=47.16 Aligned_cols=55 Identities=25% Similarity=0.681 Sum_probs=37.4
Q ss_pred CCCCcCccccccccCCCee-eecC-CCC---ccccHhhHHHHHhcCC--------CCCCCCccccccc
Q 042990 69 GLDTECVICLSEFAAGDRL-RLLP-KCN---HGFHVRCIDKWLSSHS--------SCPKCRHCLIETC 123 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~-~~l~-~C~---H~FH~~Ci~~Wl~~~~--------~CP~CR~~~~~~~ 123 (165)
+.+..|-||...=+++..- =+-| +|. |..|..|+.+|+..+. +||.|++.+...-
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 4578899999886554321 1122 243 8999999999993322 4999999877543
No 82
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.034 Score=44.90 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 121 (165)
..+.+|++|.+.=... -... .|+|+||=.||..-+.. ..+||.|-.+..+
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCC--eeec-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 4678999998874432 2233 49999999999987643 4689999777763
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.85 E-value=0.02 Score=47.54 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=37.0
Q ss_pred CCCCcCccccccccCCCeee-ecCCCCccccHhhHHHHHh-cCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLR-LLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~-~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 121 (165)
++++.|+.|+|++...++-- -.+ ||...|.-|...--. -+..||-||+-+-+
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 34566999999998665433 344 998888888766432 25579999987653
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.68 E-value=0.019 Score=35.25 Aligned_cols=43 Identities=28% Similarity=0.544 Sum_probs=30.9
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.|-.|... +.+-..++ |+|+....|+..+ +...||.|-+++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 44444443 33356777 9999999998875 67779999877654
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.64 E-value=0.02 Score=46.79 Aligned_cols=43 Identities=30% Similarity=0.673 Sum_probs=33.6
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRH 117 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~ 117 (165)
..|+.|..-+.+. ..++-|+|.|+.+||..-| .....||.|.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 5799998877663 2334499999999999877 67889999944
No 86
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.63 E-value=0.047 Score=43.91 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=41.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.....|+|...+|........+..|||+|-..++.+- +....||+|-.++.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 4567899999999766655555559999999999996 335679999887764
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.016 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.567 Sum_probs=29.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
+.++.|.+|.-.+-.. .-.+.+ |||.||++|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 5789999999987653 345666 99999999998765
No 88
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.49 E-value=0.013 Score=46.32 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=30.9
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
-|.-|.-.-. ++....+. |+|+||..|...- ....||+|+.++-
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceee
Confidence 3665654433 55666775 9999999997663 2338999999844
No 89
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.049 Score=45.59 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=40.4
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+|..|+||...--. -...| |+|.=|..||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~---Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch---hhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467899999776322 34566 99999999999999999999999998873
No 90
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.0024 Score=53.68 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=43.1
Q ss_pred CCcCccccccccCC-CeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAG-DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+||.+.|+.. +.+.... |||.+|..|+..|+.+...||.||+.+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 46799999999876 5677776 99999999999999888889999998763
No 91
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.0061 Score=49.55 Aligned_cols=43 Identities=26% Similarity=0.686 Sum_probs=32.1
Q ss_pred CCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
+..|+||++.-.+ ...|+ |||. -+..|-++. ..||+||+-+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHHH
Confidence 6789999998555 77887 9995 456775552 379999987654
No 92
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.08 E-value=0.028 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.902 Sum_probs=21.3
Q ss_pred CCCccccHhhHHHHHhcCCCCCC
Q 042990 92 KCNHGFHVRCIDKWLSSHSSCPK 114 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~~~CP~ 114 (165)
.|+|+.|.+|...||+.+..||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999983
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.026 Score=51.77 Aligned_cols=41 Identities=24% Similarity=0.755 Sum_probs=32.3
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHC 118 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 118 (165)
..|..|-..++-. .+-. .|||.||.+|+. .+...||.|+..
T Consensus 841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccchh
Confidence 5899999887752 3333 499999999988 467789999883
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.75 E-value=0.079 Score=39.48 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=22.0
Q ss_pred CCcCccccccccCCC---------eeeecCCCCc-cccHhhHHHHHh
Q 042990 71 DTECVICLSEFAAGD---------RLRLLPKCNH-GFHVRCIDKWLS 107 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~---------~~~~l~~C~H-~FH~~Ci~~Wl~ 107 (165)
+..|+||||---+.- ..|-- -|+- .-|..|++++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpy-mc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPY-MCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCcccc-ccCCccchhHHHHHHHH
Confidence 568999999744321 11111 1553 457899999753
No 95
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.55 E-value=0.033 Score=44.21 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=36.0
Q ss_pred CCCcCccccccc--cCCCeeeecCCCCccccHhhHHHHHh-cCCCCC--CCC
Q 042990 70 LDTECVICLSEF--AAGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCP--KCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~~--~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP--~CR 116 (165)
.|..|++|..+- .++-+.-.-|.|-|-.|.+|+++-|. ....|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 456899999873 34445555667999999999999995 566899 663
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.39 E-value=0.05 Score=44.16 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=37.7
Q ss_pred CCcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 71 DTECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
...|+||.+.+-... .+..++ |||.-|..|+......+.+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999876654 455666 9999999999999877799999977
No 97
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.31 E-value=0.082 Score=42.98 Aligned_cols=52 Identities=29% Similarity=0.705 Sum_probs=36.8
Q ss_pred CCCcCccccccccCCCe-eeecC-CCC---ccccHhhHHHHHh--cCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDR-LRLLP-KCN---HGFHVRCIDKWLS--SHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~-~~~l~-~C~---H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~ 121 (165)
++..|-||+++...... ....| .|. +..|+.|+..|+. .+..|..|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 35789999998765432 23333 243 6779999999995 66789999776554
No 98
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.17 Score=41.23 Aligned_cols=48 Identities=23% Similarity=0.640 Sum_probs=34.8
Q ss_pred cCcccccc-ccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccc
Q 042990 73 ECVICLSE-FAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLI 120 (165)
Q Consensus 73 ~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~ 120 (165)
.|++|... |-+.+.......|+|..|.+|+++-| .+...||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 58899876 33444333333499999999999998 55668999966554
No 99
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.25 E-value=0.074 Score=48.36 Aligned_cols=47 Identities=34% Similarity=0.784 Sum_probs=36.7
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--CCCCCCCCccccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--HSSCPKCRHCLIETC 123 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~~~ 123 (165)
..|.+|++ . +.....+ |+|.|+.+|+..-+.. ...||.||..+.+..
T Consensus 455 ~~c~ic~~-~---~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 2 3355666 9999999999998833 346999999887643
No 100
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.86 Score=38.69 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=40.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCC---CCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHS---SCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~ 118 (165)
+-..|||=.+.-.++..+..+. |||+..++-+.+..+++. -||+|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4578999998888888899998 999999999999876544 59999443
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.094 Score=47.02 Aligned_cols=39 Identities=31% Similarity=0.647 Sum_probs=29.7
Q ss_pred CcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCC
Q 042990 72 TECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCP 113 (165)
Q Consensus 72 ~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP 113 (165)
..|.||+..|-... .++.+ +|||..++.|+..- .+.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~l--yn~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLL--YNASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccc-cccchHHHHHHHhH--hhccCC
Confidence 47999998886544 34455 59999999999885 466777
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.92 E-value=0.085 Score=50.53 Aligned_cols=49 Identities=29% Similarity=0.604 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
....|.||++.+.+-..+ . .|||.++..|+..|+..+..||.|+...-.
T Consensus 1152 ~~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 345899999998752222 2 399999999999999999999999844433
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.67 E-value=0.17 Score=41.36 Aligned_cols=29 Identities=21% Similarity=0.633 Sum_probs=22.9
Q ss_pred CCccccHhhHHHHHhcC-------------CCCCCCCccccc
Q 042990 93 CNHGFHVRCIDKWLSSH-------------SSCPKCRHCLIE 121 (165)
Q Consensus 93 C~H~FH~~Ci~~Wl~~~-------------~~CP~CR~~~~~ 121 (165)
|..++|.+|+.+|+..+ .+||+||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 77899999999998432 259999987654
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.30 E-value=0.34 Score=35.14 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=35.9
Q ss_pred CCCcCccccccccCCC--eeeecCCCCccccHhhHHHHH---hcCCCCCCCCccccccc
Q 042990 70 LDTECVICLSEFAAGD--RLRLLPKCNHGFHVRCIDKWL---SSHSSCPKCRHCLIETC 123 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~--~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~~~~~~~ 123 (165)
.-.+|.||.|.-.+.. ++-. =||-..+.-|-...| ..+..||+|++++....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPne--CCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNE--CCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCccc--ccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 3579999999865533 2222 288888877655544 34778999999988653
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.03 E-value=0.31 Score=44.96 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=37.8
Q ss_pred CCCCcCccccccccCCCeeeecC-CCC---ccccHhhHHHHH--hcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP-KCN---HGFHVRCIDKWL--SSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~-~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~~~~ 121 (165)
+++..|-||+.+=.+++..- -| +|. ...|++|+.+|+ .+...|-.|+.++.-
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 45689999999866555432 23 244 578999999999 445679999887764
No 106
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.55 E-value=0.69 Score=33.12 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVRCSS 28 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r~~~ 28 (165)
|++|+++++..++++++++.|+.||.+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555444444333
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.96 E-value=0.22 Score=29.66 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=21.7
Q ss_pred CC-ccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 93 CN-HGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 93 C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
|. |..+..|+...+.....||.|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 76 999999999999999999999988763
No 108
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=87.21 E-value=0.51 Score=36.58 Aligned_cols=41 Identities=41% Similarity=0.834 Sum_probs=28.9
Q ss_pred CCCcCcccccc-----ccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 70 LDTECVICLSE-----FAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~-----~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
-+..|-+|.++ |+. +.+...+.|+.+||+.|+. +..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 35678888754 233 2455666799999999965 26799993
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=0.25 Score=42.03 Aligned_cols=38 Identities=32% Similarity=0.663 Sum_probs=28.5
Q ss_pred CCCcCccccccc-cCCCeeeecCCCCccccHhhHHHHHhc
Q 042990 70 LDTECVICLSEF-AAGDRLRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 70 ~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
...+|.||..+. ...+...... |+|.|+.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhh
Confidence 467999999554 4435555554 9999999999998853
No 110
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=0.31 Score=40.20 Aligned_cols=41 Identities=32% Similarity=0.667 Sum_probs=26.5
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHC 118 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 118 (165)
.|--|--.+.. .-|+.+ |.|+||-+|-.. ...+.||.|-..
T Consensus 92 fCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDR 132 (389)
T ss_pred eecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccH
Confidence 45556444332 346777 999999999654 345678877543
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=0.5 Score=41.93 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=40.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQKI 126 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~~ 126 (165)
+..+.|.+|.+++ ..+..+ |. |..|...|+..+..||+|+..+.++....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS 526 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence 4568999999998 245555 77 99999999999999999999888765543
No 112
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=85.63 E-value=0.29 Score=43.63 Aligned_cols=41 Identities=27% Similarity=0.757 Sum_probs=25.8
Q ss_pred CCcCcccccc-----ccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCC
Q 042990 71 DTECVICLSE-----FAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 71 ~~~C~ICl~~-----~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
...|.+|... |+ .+.++....|+++||+.|+.+ +..-||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4567777322 22 233444445999999999655 44459999
No 113
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=85.41 E-value=0.78 Score=32.90 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 042990 5 VLLCALICSLGLNSIIRCVVRCSSL 29 (165)
Q Consensus 5 ill~~ll~~~~l~~i~~~~~r~~~~ 29 (165)
++++++++++++++++.|+.+|+++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444433
No 114
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.25 E-value=0.68 Score=38.16 Aligned_cols=43 Identities=21% Similarity=0.576 Sum_probs=32.6
Q ss_pred CCcCccccccccCCCeeeecCCC--CccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKC--NHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
-.+|+||.+.+... +. +| ||+.+..|=. +....||.||.++-.
T Consensus 48 lleCPvC~~~l~~P---i~--QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP---IF--QCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hccCchhhccCccc---ce--ecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 36899999999873 33 26 5899988854 356779999998763
No 115
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=0.71 Score=36.03 Aligned_cols=40 Identities=30% Similarity=0.615 Sum_probs=28.4
Q ss_pred CccccccccCCCeeeecCCCCc-cccHhhHHHHHhcCCCCCCCCccccc
Q 042990 74 CVICLSEFAAGDRLRLLPKCNH-GFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
|-.|.+. +..+..+| |.| .+|..|=.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8788765 45588898 997 667778432 4559999876543
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.60 E-value=1 Score=41.23 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=30.5
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCC
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPK 114 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~ 114 (165)
...|.+|...+.. ...-.+.|+|.-|.+|+..|+....-||.
T Consensus 779 ~~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3478888776543 12223469999999999999988777765
No 117
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=81.95 E-value=0.78 Score=35.88 Aligned_cols=44 Identities=27% Similarity=0.712 Sum_probs=34.6
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
-..|.+|..-.-.+ + ....|+-.+|..|+..++.....||.|-.
T Consensus 181 lk~Cn~Ch~LvIqg--~-rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--I-RCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhhee--e-ccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 36899998875542 3 33348899999999999988889999943
No 119
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.76 E-value=1.7 Score=35.00 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=38.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 124 (165)
....|+|-.-+|........+..|||+|-..-+.+. +..+|++|-+.+-+.+-
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 346799988888765544444459999999887774 46789999887775443
No 120
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=80.49 E-value=1.1 Score=26.29 Aligned_cols=42 Identities=29% Similarity=0.664 Sum_probs=27.5
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHh------cCCCCCCCC
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS------SHSSCPKCR 116 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR 116 (165)
|.||...-..++.+.-- .|+..||..|+..=.. ....||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88998854444444444 5999999999765432 134577664
No 121
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.05 E-value=0.47 Score=43.04 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=37.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc---CCCCCCCCcccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS---HSSCPKCRHCLIET 122 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~ 122 (165)
..+|+||...+... ..+. |.|.|...|+..-|.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46999999998874 5565 9999999998876633 45799998766543
No 122
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=78.37 E-value=1.3 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.674 Sum_probs=13.0
Q ss_pred cCccccccccCCCeeeecCCCCccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGF 97 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~F 97 (165)
.|+-|...+... ....|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666665432 33444577766
No 123
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=77.77 E-value=1.8 Score=26.14 Aligned_cols=43 Identities=28% Similarity=0.639 Sum_probs=21.3
Q ss_pred CccccccccCC------CeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 74 CVICLSEFAAG------DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 74 C~ICl~~~~~~------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
|--|+..|... ......+.|++.|+.+|=.---..=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 45566666553 24556678999999999322113445799883
No 124
>PF15050 SCIMP: SCIMP protein
Probab=77.41 E-value=3.2 Score=29.56 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 042990 7 LCALICSLGLNSIIRCVVRCSSL 29 (165)
Q Consensus 7 l~~ll~~~~l~~i~~~~~r~~~~ 29 (165)
++++++.+++.+|.+|..|+..+
T Consensus 14 VaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 14 VAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666677777665444
No 125
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=76.39 E-value=1.5 Score=35.47 Aligned_cols=49 Identities=33% Similarity=0.700 Sum_probs=34.3
Q ss_pred CCcCccccccccCCCeeee---cCCCCccccHhhHHHHHhc---------CCCCCCCCccc
Q 042990 71 DTECVICLSEFAAGDRLRL---LPKCNHGFHVRCIDKWLSS---------HSSCPKCRHCL 119 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~---l~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~~ 119 (165)
..+|-+|.++|...+..+. -+.|+-.+|..|+..-+.. +..||.|+..+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3689999999954443332 2258899999999995422 22599998744
No 126
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=76.28 E-value=2.5 Score=31.88 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 042990 2 VLSVLLCALICSL 14 (165)
Q Consensus 2 Il~ill~~ll~~~ 14 (165)
|++|+++++++++
T Consensus 81 ivgvi~~Vi~Iv~ 93 (179)
T PF13908_consen 81 IVGVICGVIAIVV 93 (179)
T ss_pred eeehhhHHHHHHH
Confidence 3444444444433
No 127
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=76.21 E-value=1.6 Score=24.36 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=15.4
Q ss_pred cCccccccccCCCe-------eeecCCCCcccc
Q 042990 73 ECVICLSEFAAGDR-------LRLLPKCNHGFH 98 (165)
Q Consensus 73 ~C~ICl~~~~~~~~-------~~~l~~C~H~FH 98 (165)
.|+-|...|...+. ....+.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778887764331 223345777775
No 128
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=1.8 Score=37.51 Aligned_cols=37 Identities=27% Similarity=0.620 Sum_probs=30.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
..+..|.||.+.+.. ....+. |+|.|+..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 356899999999876 455565 9999999999999854
No 129
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.48 E-value=2.2 Score=35.46 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=36.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCC---CCCCCC
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHS---SCPKCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR 116 (165)
.-..|++=.+.-.+...+..+. |||+.-+.-+++.-+++. .||+|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4467998777777777788887 999999999998655433 599993
No 130
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=74.93 E-value=1.4 Score=38.17 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=28.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
++..|+||..-|.+ ++.++ |+|..+.-|-..-+
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhc
Confidence 46789999999887 78998 99999999987655
No 131
>PF15102 TMEM154: TMEM154 protein family
Probab=74.23 E-value=2.2 Score=31.47 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=4.2
Q ss_pred hhHHHHH
Q 042990 100 RCIDKWL 106 (165)
Q Consensus 100 ~Ci~~Wl 106 (165)
+=++.|+
T Consensus 128 eeldkwm 134 (146)
T PF15102_consen 128 EELDKWM 134 (146)
T ss_pred HHHHhHH
Confidence 3466776
No 132
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.65 E-value=5.2 Score=28.21 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCcCccccccccCC----------CeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 71 DTECVICLSEFAAG----------DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 71 ~~~C~ICl~~~~~~----------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
...|--|+..|... ......+.|++.|+.+|=.-+-..=.+||.|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45799999988642 12334567999999999777767777799995
No 133
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.40 E-value=5.6 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHHh-cCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 120 (165)
+...|-||-+.+. +++.-.....|+--.++.|..-=.+ .++.||.|++.+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4568999999975 3444444445888889999876554 4667999997665
No 134
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.99 E-value=1.6 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.480 Sum_probs=30.9
Q ss_pred CCCcCccccccccCC----CeeeecCCCCccccHhhHHHHHhcCCCCCCC
Q 042990 70 LDTECVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
.+..|.-|.+..-.. +.+.++. |||+||+.|+..-..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 345799999886532 3566776 999999999988764443 4333
No 135
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=70.35 E-value=5.2 Score=21.36 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=23.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
.|..|.+.+.+++..... =+..||.+|+ .|..|...+
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 377888888775333232 4678888773 466666554
No 136
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=68.70 E-value=2.5 Score=26.50 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=18.7
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
+...|.+|...|..-..-.....||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 357899999999764444444469999999887544
No 137
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=68.51 E-value=3 Score=26.51 Aligned_cols=13 Identities=38% Similarity=1.096 Sum_probs=9.1
Q ss_pred cccHhhHHHHHhc
Q 042990 96 GFHVRCIDKWLSS 108 (165)
Q Consensus 96 ~FH~~Ci~~Wl~~ 108 (165)
-||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999843
No 138
>PLN02189 cellulose synthase
Probab=67.49 E-value=6 Score=37.82 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~ 120 (165)
....|.||-+++. +|+.-+....|+--.|+.|.+-=. ..++.||.|++.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3468999999975 455555566688889999984433 33668999998776
No 139
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=66.37 E-value=5.2 Score=23.89 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=25.0
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
..|.+|...|.....-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57899988887644333344599999999977653
No 140
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=65.61 E-value=6.2 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
|+-|...+..++.+... -+..||.+| ..|-.|+..+...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 66777777765544322 667888766 4577777766544
No 141
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=4 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS 107 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 107 (165)
+-+.|..||..+.+ +...+ =||+|.++||.+++.
T Consensus 42 ~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 34789999999877 56676 899999999999973
No 142
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=65.37 E-value=5.5 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=10.7
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhH
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCI 102 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 102 (165)
.|.+|.+.... .....-.+|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47788888765 344555569999999885
No 143
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=65.20 E-value=3.2 Score=38.52 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=38.6
Q ss_pred CCCcCccccccccCCC---eeeecCCCCccccHhhHHHHHhc------CCCCCCCCcccccccc
Q 042990 70 LDTECVICLSEFAAGD---RLRLLPKCNHGFHVRCIDKWLSS------HSSCPKCRHCLIETCQ 124 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~~~~ 124 (165)
..+.|.+|.-++.+.. ..-.+.+|+|.||-.||..|..+ .-.|+.|...+..+..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 3467888888887622 11222359999999999999733 3358999888876544
No 144
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=64.83 E-value=4.4 Score=27.84 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042990 3 LSVLLCALICSLGLNSIIRCVV 24 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~~~~~ 24 (165)
+++++.++.+++.++.+++++.
T Consensus 65 li~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEE
Confidence 3344444444444444444333
No 145
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=63.20 E-value=4.7 Score=22.33 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=15.3
Q ss_pred cCccccccccCCCe-------eeecCCCCcccc
Q 042990 73 ECVICLSEFAAGDR-------LRLLPKCNHGFH 98 (165)
Q Consensus 73 ~C~ICl~~~~~~~~-------~~~l~~C~H~FH 98 (165)
.|+=|...|..++. ....+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778888764332 122334778774
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.55 E-value=10 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042990 1 MVLSVLLCALICSLGLNSIIRCVVRCSS 28 (165)
Q Consensus 1 vIl~ill~~ll~~~~l~~i~~~~~r~~~ 28 (165)
||++++..++++++++.++++-.+++..
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4667777776666655555555555543
No 147
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.57 E-value=11 Score=31.45 Aligned_cols=51 Identities=27% Similarity=0.589 Sum_probs=33.3
Q ss_pred CCCCcCcccccccc---------C------CCee-eecCCCCccccHhhHHHHHhc---------CCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFA---------A------GDRL-RLLPKCNHGFHVRCIDKWLSS---------HSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~---------~------~~~~-~~l~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~~~ 120 (165)
..+.+|++|+..-. . +-.. ...| |||+--+.-..-|-+. +..||.|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34689999998621 1 1111 1244 9999999998888643 235999976554
No 149
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.53 E-value=9.2 Score=22.74 Aligned_cols=42 Identities=19% Similarity=0.497 Sum_probs=17.5
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----cCCCCCCCCc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----SHSSCPKCRH 117 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 117 (165)
..|++....+.. .+|... |.|.-+.+ +..|+. ....||.|.+
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 358887777765 355554 99975432 223332 2336999975
No 150
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.44 E-value=6 Score=32.44 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH 109 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~ 109 (165)
.-..|.+|.|.+++..-+..-.-=.|.||.-|-.+-++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 3478999999999865441111124999999988888653
No 151
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.02 E-value=2.6 Score=30.77 Aligned_cols=51 Identities=31% Similarity=0.543 Sum_probs=27.1
Q ss_pred CCCCCcCcccccc-ccCCCeeeecCCCCccccHhhHHHHH-hcCC---CCCCCCccc
Q 042990 68 AGLDTECVICLSE-FAAGDRLRLLPKCNHGFHVRCIDKWL-SSHS---SCPKCRHCL 119 (165)
Q Consensus 68 ~~~~~~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~---~CP~CR~~~ 119 (165)
.+.+..|.||+.. |.+|-.-.... |.--||..|--+-- +.++ .|-+|+...
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3577899999875 55532222222 33344555544432 2233 488887643
No 152
>PLN02436 cellulose synthase A
Probab=57.92 E-value=11 Score=36.16 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=37.7
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHHh-cCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 120 (165)
....|-||-+++. +|+.-+....|+--.|+.|.+-=.+ .++.||.|++.+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999964 5666666666888899999854333 3667999998776
No 153
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=57.15 E-value=12 Score=31.21 Aligned_cols=66 Identities=23% Similarity=0.437 Sum_probs=40.6
Q ss_pred HHhhcCCeEeeccccccC-CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 51 KALKTFPVVSYSAELNLA-GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 51 ~~~~~lp~~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
+.--.+|...+....... ..+..|-.|.++.......+.-. |.+.|+.+|=.---..=..||.|..
T Consensus 309 SyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 309 SYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 333344554454432221 23456999988877665555554 9999999995443345557999963
No 154
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=56.08 E-value=12 Score=24.35 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r 25 (165)
|++++++++++++++..+..++.|
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~r 25 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFR 25 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred EEehHHHHHHHHHHhheeEEEEEe
Confidence 344444444444444434333333
No 155
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=5.5 Score=33.99 Aligned_cols=44 Identities=20% Similarity=0.507 Sum_probs=31.4
Q ss_pred CCcCccccccccCCCe--eeecCCCCccccHhhHHHHHhcCCCCCCC
Q 042990 71 DTECVICLSEFAAGDR--LRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~--~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
-..|+.|.-.++-.+. ..... |||.|+-.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4679999887754332 22344 99999999999998777766444
No 156
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.98 E-value=1.4 Score=35.83 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=19.7
Q ss_pred CCcCccccccccCCCeeeecC--CCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLRLLP--KCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
...|+||-..-..+. ++... .=.|.+|..|-.+|--.+..||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 368999987732211 11110 02467777888888767778999944
No 157
>PLN02195 cellulose synthase A
Probab=54.07 E-value=19 Score=34.41 Aligned_cols=52 Identities=15% Similarity=0.359 Sum_probs=37.7
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~ 121 (165)
....|.||-+++. +|+.-.....|+--.|+.|.+-=- ..++.||.|++.+.+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 4468999999875 455555555688889999984322 236679999998883
No 158
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=53.67 E-value=15 Score=35.34 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=36.8
Q ss_pred CCcCcccccccc---CCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~ 120 (165)
...|-||-+++. +|+.-.....|+--.|+.|.+-=. ..++.||.|++.+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 458999999975 455555555688889999984322 33667999998776
No 159
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=53.27 E-value=17 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhc
Q 042990 1 MVLSVLLCALICSLGLNSIIRCVVRC 26 (165)
Q Consensus 1 vIl~ill~~ll~~~~l~~i~~~~~r~ 26 (165)
+++++++.++++.+++.+.++|-..+
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35677777777777777777665443
No 160
>PLN02248 cellulose synthase-like protein
Probab=53.01 E-value=19 Score=34.89 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCCccccHhhHHHHHhcCCCCCCCCcccccccccc
Q 042990 92 KCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQKI 126 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~~ 126 (165)
.|++..|++|...-++..-.||-|+.++...+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTDLDD 183 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccccccccc
Confidence 38888899999999988889999999886544433
No 161
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=52.50 E-value=29 Score=21.37 Aligned_cols=47 Identities=21% Similarity=0.610 Sum_probs=33.0
Q ss_pred CcCccccccccCCC-eeeecCCCC--ccccHhhHHHHHhcCCCCCCCCccccccc
Q 042990 72 TECVICLSEFAAGD-RLRLLPKCN--HGFHVRCIDKWLSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 72 ~~C~ICl~~~~~~~-~~~~l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 123 (165)
..|--|-.++.+++ .-.. |. .-|+.+|.+.-| +..||.|-..++..+
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 45667777776654 2222 44 469999999865 778999988887654
No 162
>PF14979 TMEM52: Transmembrane 52
Probab=52.11 E-value=35 Score=25.24 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=5.1
Q ss_pred HHHHHhhccC
Q 042990 19 IIRCVVRCSS 28 (165)
Q Consensus 19 i~~~~~r~~~ 28 (165)
+.+|++|+..
T Consensus 42 ~rfCClrk~~ 51 (154)
T PF14979_consen 42 VRFCCLRKQA 51 (154)
T ss_pred HHHHHhcccc
Confidence 3336665554
No 163
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=51.16 E-value=13 Score=28.91 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhhccC
Q 042990 3 LSVLLCA--LICSLGLNSIIRCVVRCSS 28 (165)
Q Consensus 3 l~ill~~--ll~~~~l~~i~~~~~r~~~ 28 (165)
|++++.. ++++++++.+++|..||+.
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 3444444 5555555555666655543
No 164
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=50.77 E-value=10 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.795 Sum_probs=14.2
Q ss_pred CCCccccHhhHHHHHhcCCCCCCC
Q 042990 92 KCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
.|||.|...=-++ ...+..||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4777766543333 2567779988
No 165
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=49.91 E-value=8.7 Score=23.91 Aligned_cols=16 Identities=19% Similarity=0.702 Sum_probs=12.0
Q ss_pred CCCCCCCCcccccccc
Q 042990 109 HSSCPKCRHCLIETCQ 124 (165)
Q Consensus 109 ~~~CP~CR~~~~~~~~ 124 (165)
...||+|..+..+..+
T Consensus 39 ~p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTR 54 (59)
T ss_pred CccCCCcCCcccccee
Confidence 4469999998887543
No 166
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=49.10 E-value=22 Score=24.64 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=28.3
Q ss_pred CCcCccccccccCCCeee----ecCCC---CccccHhhHHHHHhc---------CCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLR----LLPKC---NHGFHVRCIDKWLSS---------HSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~----~l~~C---~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 117 (165)
...|..|...-.+....- ..+.| .-.|+..|+..++.. +..||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456777766533211100 11236 778999999988743 225999987
No 167
>PF15050 SCIMP: SCIMP protein
Probab=48.93 E-value=26 Score=25.07 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVRCSSL 29 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r~~~~ 29 (165)
.++|+++.+++.+.++++++..+|.-+.
T Consensus 13 AVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 13 AVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3578888888889999999999887553
No 168
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.72 E-value=20 Score=34.42 Aligned_cols=51 Identities=20% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHHh-cCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 120 (165)
....|-||-++.. +|+.-.....|+--.|+.|.+-=.+ .+..||.|++.+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4568999999975 4555555556888899999843333 3667999998776
No 169
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=46.29 E-value=1.9e+02 Score=26.71 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=6.4
Q ss_pred CCCccccccccc
Q 042990 151 PLEPEGLIRNYR 162 (165)
Q Consensus 151 ~~~~~~~~~~~~ 162 (165)
|+.+++.|++.-
T Consensus 498 p~yg~a~iv~~Q 509 (807)
T KOG1094|consen 498 PHYGEADIVTLQ 509 (807)
T ss_pred CCcCcccccccc
Confidence 455555555543
No 170
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=46.15 E-value=12 Score=33.56 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=24.4
Q ss_pred CCCCcCccccccccC-----------CCeeeecCCCCccccHhhHHHH
Q 042990 69 GLDTECVICLSEFAA-----------GDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
+....|+||.|.|+. .+.+. +. =|-+||..|+..=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVY-LE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceee-ec-cCceeeccccchH
Confidence 345789999999864 11232 32 4889999998774
No 171
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=45.27 E-value=47 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSI 19 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i 19 (165)
++++.+++++++++.++
T Consensus 4 l~il~llLll~l~asl~ 20 (107)
T PF15330_consen 4 LGILALLLLLSLAASLL 20 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 172
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=44.14 E-value=20 Score=30.30 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=11.7
Q ss_pred CCCCcCccccccccC
Q 042990 69 GLDTECVICLSEFAA 83 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~ 83 (165)
+.++.|++|-++.+.
T Consensus 13 dl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG 27 (475)
T ss_pred ccccccccccCcccc
Confidence 457899999998653
No 173
>PF15069 FAM163: FAM163 family
Probab=43.94 E-value=21 Score=26.23 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVRC 26 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r~ 26 (165)
|.+.+|+.++++.++..+.+|.+++
T Consensus 8 ItGgILAtVILLcIIaVLCYCRLQY 32 (143)
T PF15069_consen 8 ITGGILATVILLCIIAVLCYCRLQY 32 (143)
T ss_pred EechHHHHHHHHHHHHHHHHHhhHH
Confidence 4455555555555555555555443
No 174
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.46 E-value=17 Score=24.75 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
....|.||......--+.... .|...||-.|....
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 357899999983331122222 38899999997663
No 175
>PLN02400 cellulose synthase
Probab=43.05 E-value=20 Score=34.67 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=36.3
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~ 120 (165)
+...|-||-+++. +|+.-.....|+--.|+.|.+-=- ..++.||.|++.+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3458999999975 455555555688889999973222 23667999998776
No 176
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=42.82 E-value=64 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVRCSSL 29 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r~~~~ 29 (165)
|+-++++++++.+.++.++..++-++..
T Consensus 190 ilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 190 ILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444444444444444443
No 177
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.76 E-value=48 Score=27.71 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=32.6
Q ss_pred CcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 72 TECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 72 ~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
..|+||-+.....+ ...-.+ |++..|..|...-...+.+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 78999999874433 222333 7776666676666667888999994444
No 178
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.73 E-value=8.1 Score=33.05 Aligned_cols=44 Identities=23% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCcCccccccccC-----------CCeeeecCCCCccccHhhHHHHHh------cCCCCCCCCcc
Q 042990 71 DTECVICLSEFAA-----------GDRLRLLPKCNHGFHVRCIDKWLS------SHSSCPKCRHC 118 (165)
Q Consensus 71 ~~~C~ICl~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~ 118 (165)
-..|++=+..+.- .+....+. |||++..+ .|-. ..+.||+||..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeecc-ccceeeec---ccccccccccccccCCCcccc
Confidence 3567776666532 11233454 99977643 4542 14579999863
No 179
>PRK01844 hypothetical protein; Provisional
Probab=41.49 E-value=42 Score=21.73 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042990 5 VLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 5 ill~~ll~~~~l~~i~~~~~r 25 (165)
++.+++.++++++...+++.+
T Consensus 11 I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 180
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=41.40 E-value=16 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--CCCCCC
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--HSSCPK 114 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~ 114 (165)
+..|+|=...+.+ +.....|||+|-++-|...+.. ...||+
T Consensus 176 s~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 3568887666665 3344469999999999999865 445775
No 181
>PRK05978 hypothetical protein; Provisional
Probab=41.37 E-value=17 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.611 Sum_probs=20.2
Q ss_pred CCCC--ccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 91 PKCN--HGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 91 ~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
|+|| ++|+ .+++.+..||.|-.++...
T Consensus 37 P~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 37 PACGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCCCcccc-----cccccCCCccccCCccccC
Confidence 3455 7786 5778899999997777654
No 182
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=41.24 E-value=8.4 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=19.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.|+.|..+++... +|.++..|-.. +.....||-|..++-
T Consensus 3 ~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 3 TCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred cCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 6888888865422 44455555443 345556888877664
No 183
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=41.09 E-value=18 Score=18.95 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=18.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhh
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRC 101 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~C 101 (165)
.|.+|.++..... ...-..|.-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5888877766543 333344777777766
No 184
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=40.73 E-value=15 Score=20.37 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=18.6
Q ss_pred ecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 89 LLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 89 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..+.||++||..---. +....|..|-..++..
T Consensus 3 ~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPP--KVEGVCDNCGGELVQR 34 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEBEE
T ss_pred CcCCCCCccccccCCC--CCCCccCCCCCeeEeC
Confidence 3446999999532110 2344688887776653
No 185
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=40.33 E-value=34 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 042990 8 CALICSLGLNSIIRCVVR 25 (165)
Q Consensus 8 ~~ll~~~~l~~i~~~~~r 25 (165)
+++++++..++++||++-
T Consensus 34 V~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 34 VGLLCLFLGLLIVRCFRI 51 (81)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455566777754
No 186
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=39.71 E-value=11 Score=32.86 Aligned_cols=55 Identities=20% Similarity=0.481 Sum_probs=35.0
Q ss_pred CCCcCccccccc-cCCCeeeecCCCCccccHhhHHHHHhc--------CCCCCCCCcccccccc
Q 042990 70 LDTECVICLSEF-AAGDRLRLLPKCNHGFHVRCIDKWLSS--------HSSCPKCRHCLIETCQ 124 (165)
Q Consensus 70 ~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~~~~~~~ 124 (165)
.+..|.+|..-. .....+.....|+-.||..|.....+. ...|-+|.......+.
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r 230 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPR 230 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccc
Confidence 456699998543 233344455568999999997765422 1249999775554433
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.58 E-value=14 Score=34.03 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=27.4
Q ss_pred eeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 86 RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 86 ~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.+...|+|..+||.+=+..-..++-.||.||.+.-
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 34456678899998887777777888999998754
No 188
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=39.53 E-value=9.8 Score=31.28 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 042990 2 VLSVLLCALICSL 14 (165)
Q Consensus 2 Il~ill~~ll~~~ 14 (165)
|.++++++++++.
T Consensus 150 IpaVVI~~iLLIA 162 (290)
T PF05454_consen 150 IPAVVIAAILLIA 162 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 189
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.50 E-value=15 Score=24.96 Aligned_cols=13 Identities=31% Similarity=1.035 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhc
Q 042990 96 GFHVRCIDKWLSS 108 (165)
Q Consensus 96 ~FH~~Ci~~Wl~~ 108 (165)
.||+.|+..|++.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999954
No 190
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=39.36 E-value=30 Score=24.38 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=12.6
Q ss_pred HhcCCCCCCCCcccccc
Q 042990 106 LSSHSSCPKCRHCLIET 122 (165)
Q Consensus 106 l~~~~~CP~CR~~~~~~ 122 (165)
+.+...|+.|+.++.-.
T Consensus 82 LGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLD 98 (114)
T ss_pred hchhhccCcCCCcCccC
Confidence 34556799999988754
No 191
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=38.45 E-value=12 Score=22.46 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=6.7
Q ss_pred CCCCCCccccccc
Q 042990 111 SCPKCRHCLIETC 123 (165)
Q Consensus 111 ~CP~CR~~~~~~~ 123 (165)
.||+|.+++-+..
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 7999988887643
No 192
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=38.44 E-value=5.6 Score=32.65 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=28.7
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCC
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHS 110 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~ 110 (165)
.+|.+|.++|..+....... |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 48999999998755555554 666899999999975533
No 193
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.39 E-value=58 Score=20.58 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 042990 3 LSVLLCALICSLGLNSIIRCVVRC 26 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~~~~~r~ 26 (165)
++++.+++.+++++++..+++.+.
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~ 25 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQ 25 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666544
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.31 E-value=27 Score=32.61 Aligned_cols=47 Identities=32% Similarity=0.707 Sum_probs=30.1
Q ss_pred CCCCcCccccccccC----C-----CeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAA----G-----DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~----~-----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
..+..|+-|..+|-. | ...-..+.|.|.-|.+=|.. ...||+|...+
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 345677777777632 1 11223556999998876554 67899996544
No 195
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.97 E-value=31 Score=25.55 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhccC
Q 042990 12 CSLGLNSIIRCVVRCSS 28 (165)
Q Consensus 12 ~~~~l~~i~~~~~r~~~ 28 (165)
++++++.++.|-.|...
T Consensus 42 iiiiivli~lcssRKkK 58 (189)
T PF05568_consen 42 IIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHhhhhHH
Confidence 33334444444444333
No 196
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=37.76 E-value=24 Score=23.04 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
....|.+|.......-....- .|...||-.|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 356899999874432233333 5999999999655
No 197
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.73 E-value=67 Score=19.27 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSII 20 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~ 20 (165)
.+.+++++++++++..+.
T Consensus 17 gGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 17 GGLIFAGVLFILGILIIL 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 345566666666665554
No 198
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=37.67 E-value=39 Score=22.73 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
-..|.-|...+.-- -..| |-.|+..+-.|..|++.+..
T Consensus 33 rS~C~~C~~~L~~~---~lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWW---DLIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCccc---ccch----------HHHHHHhCCCCcccCCCCCh
Confidence 35788888887652 3445 77899888889999988764
No 199
>PRK00523 hypothetical protein; Provisional
Probab=37.60 E-value=52 Score=21.29 Aligned_cols=17 Identities=6% Similarity=-0.056 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042990 9 ALICSLGLNSIIRCVVR 25 (165)
Q Consensus 9 ~ll~~~~l~~i~~~~~r 25 (165)
++.++++++...+++.+
T Consensus 16 i~G~~~Gffiark~~~k 32 (72)
T PRK00523 16 IVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 200
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=37.49 E-value=11 Score=22.75 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=14.2
Q ss_pred eeecCCCCccccHhhHHHH
Q 042990 87 LRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 87 ~~~l~~C~H~FH~~Ci~~W 105 (165)
....+.|+|.|+..|-..|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 4445358999999888777
No 201
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=36.93 E-value=7.7 Score=28.76 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSII 20 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~ 20 (165)
+++++++++++.++.+++
T Consensus 14 igi~Ll~lLl~cgiGcvw 31 (158)
T PF11770_consen 14 IGISLLLLLLLCGIGCVW 31 (158)
T ss_pred HHHHHHHHHHHHhcceEE
Confidence 444444444444444443
No 202
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.91 E-value=48 Score=20.98 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 042990 4 SVLLCALICSLGLNSIIRCVV 24 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i~~~~~ 24 (165)
.+.-++++++++.+.++.|..
T Consensus 19 vV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 19 VVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 333344445555555555543
No 203
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.33 E-value=29 Score=21.53 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=22.7
Q ss_pred CCcCccccccccC--CCeeeecCCCCccccHhhHHH
Q 042990 71 DTECVICLSEFAA--GDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 71 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
...|+.|-..... ....-..+.||+.+|++--..
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 4579999888766 334445556888888765443
No 204
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.06 E-value=24 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=17.9
Q ss_pred CcCccccccccCCCeeeecCCCCccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGF 97 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~F 97 (165)
..|++|.+.+...+..-... .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 46999999997655444444 57877
No 205
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=34.73 E-value=34 Score=23.93 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCCcCccccccccCCC-eeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~ 104 (165)
++..|++|..+|..-. .-.....|+|.++..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 5679999999875321 1233345999999888544
No 206
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=34.56 E-value=49 Score=25.40 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVRCS 27 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r~~ 27 (165)
++.+..+++++++.+++.-|-+.|..
T Consensus 14 vlv~a~g~l~~vllfIfaKRQI~Rf~ 39 (186)
T PF07406_consen 14 VLVIAYGSLVFVLLFIFAKRQIMRFA 39 (186)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555545554443
No 207
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=33.46 E-value=46 Score=24.20 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.8
Q ss_pred CCCCCCCcccccccc
Q 042990 110 SSCPKCRHCLIETCQ 124 (165)
Q Consensus 110 ~~CP~CR~~~~~~~~ 124 (165)
..||.|...+.+.+.
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 679999998887543
No 208
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=33.45 E-value=1.4e+02 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042990 5 VLLCALICSLGLNSIIRCVVRCSS 28 (165)
Q Consensus 5 ill~~ll~~~~l~~i~~~~~r~~~ 28 (165)
.-+.+++..+.+..+.+|.+.++.
T Consensus 23 gga~llL~~v~l~vvL~C~r~~~a 46 (87)
T PF11980_consen 23 GGALLLLVAVCLGVVLYCHRFHWA 46 (87)
T ss_pred ccHHHHHHHHHHHHHHhhhhhccc
Confidence 334444555555555555554443
No 209
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.68 E-value=12 Score=30.93 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCcCccccccccCCCeeeec---CCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLRLL---PKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l---~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
...|++|-..=..+ .++.. ..=.+.+|..|-.+|--.+..||.|-.
T Consensus 184 ~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 34899998763111 01110 012255666788888767778999955
No 210
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.39 E-value=60 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042990 3 LSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~~~~~r 25 (165)
++|+-.+++++++|+++..|..|
T Consensus 276 l~ILG~~~livl~lL~vLl~yCr 298 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCR 298 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444445555554444333
No 211
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=31.90 E-value=16 Score=33.60 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=33.4
Q ss_pred CCCcCccccccccCCC-------eeeecCCCCccccHhhHHHH--H--------hcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGD-------RLRLLPKCNHGFHVRCIDKW--L--------SSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~-------~~~~l~~C~H~FH~~Ci~~W--l--------~~~~~CP~CR~~~~~ 121 (165)
....|-||-|+-.+.. .+-.. .|...||-.|-.+- | .+-+.|.+|+..+-+
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hcceeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 4468999998854422 22233 38899999997764 1 123359999886653
No 212
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=7.6 Score=31.41 Aligned_cols=50 Identities=26% Similarity=0.465 Sum_probs=37.7
Q ss_pred CCcCccccccccCC---CeeeecCC-------CCccccHhhHHHHHh-cCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAG---DRLRLLPK-------CNHGFHVRCIDKWLS-SHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~---~~~~~l~~-------C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 120 (165)
+..|.||...|+.. ...+++.. |+|..+..|++.-+. ....||.|+....
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~~ 267 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSHI 267 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccceee
Confidence 46799999999832 23444434 999999999999873 4568999987643
No 213
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=31.81 E-value=28 Score=31.80 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=31.1
Q ss_pred CCcCccccccccC--CCeeeecCCCCccccHhhHHHHHhc-----CCCCCCCCcccc
Q 042990 71 DTECVICLSEFAA--GDRLRLLPKCNHGFHVRCIDKWLSS-----HSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~~~ 120 (165)
...|.+|-..=+. +..+..- .|+-.+|..|+..|+.. ...||-||....
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~-~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACS-DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhhhhhhccccccccCcchhhh-hhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 4567776443222 2233334 48999999999999843 345888876544
No 214
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=31.71 E-value=35 Score=25.52 Aligned_cols=14 Identities=0% Similarity=0.178 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 042990 5 VLLCALICSLGLNS 18 (165)
Q Consensus 5 ill~~ll~~~~l~~ 18 (165)
+++.+++++++++.
T Consensus 80 iivgvi~~Vi~Iv~ 93 (179)
T PF13908_consen 80 IIVGVICGVIAIVV 93 (179)
T ss_pred eeeehhhHHHHHHH
Confidence 33334443443433
No 215
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=30.83 E-value=39 Score=29.16 Aligned_cols=54 Identities=20% Similarity=0.478 Sum_probs=33.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC------------------------CCCCCCCcccccccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH------------------------SSCPKCRHCLIETCQKI 126 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~------------------------~~CP~CR~~~~~~~~~~ 126 (165)
..+|+||+--|-..... ..- |..-.+..|+.+.-.-. ..||.|..+..-..++.
T Consensus 74 ~~ecpicflyyps~~n~-~rc-C~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~ 151 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNL-VRC-CSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIK 151 (482)
T ss_pred cccCceeeeecccccch-hhh-hccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeec
Confidence 35899999887542211 221 66777777766642111 02999998887666644
No 216
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.27 E-value=14 Score=21.06 Aligned_cols=24 Identities=33% Similarity=0.834 Sum_probs=13.6
Q ss_pred CCCccccHhh-HHHHHhcCCCCCCCCc
Q 042990 92 KCNHGFHVRC-IDKWLSSHSSCPKCRH 117 (165)
Q Consensus 92 ~C~H~FH~~C-i~~Wl~~~~~CP~CR~ 117 (165)
.|||.|...- +.. .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 3777776421 111 23456999977
No 217
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=30.16 E-value=25 Score=18.27 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=6.9
Q ss_pred CCCCCCcccccccc
Q 042990 111 SCPKCRHCLIETCQ 124 (165)
Q Consensus 111 ~CP~CR~~~~~~~~ 124 (165)
.||.|-..+...+.
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 48999888885443
No 218
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=29.72 E-value=42 Score=19.48 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=22.4
Q ss_pred CCCcCccccccc--cCCCeeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEF--AAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~--~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
....|.+|.+.+ ......+-.. |+-..|+.|+..
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 456899999998 2333444554 999999999654
No 219
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=29.61 E-value=35 Score=21.27 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=8.1
Q ss_pred CCCCCCCCccccc
Q 042990 109 HSSCPKCRHCLIE 121 (165)
Q Consensus 109 ~~~CP~CR~~~~~ 121 (165)
+..||+|+..+..
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 3457777776643
No 220
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.38 E-value=25 Score=29.20 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCcCccccccccCCCeeee--cCCCCccccHhhHHHHHhcCCCCCCCCc
Q 042990 70 LDTECVICLSEFAAGDRLRL--LPKCNHGFHVRCIDKWLSSHSSCPKCRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~--l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 117 (165)
....|++|-..=... .++. ...=.+.+|..|-.+|--.+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 356899997762211 0111 0112356667788888767778999954
No 221
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=29.32 E-value=44 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCccccHhhHHHHHhcCCCCCCCCccccccccc
Q 042990 93 CNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQK 125 (165)
Q Consensus 93 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~ 125 (165)
||+--|.--+.++ ..-.+||.|+.++.+..++
T Consensus 65 CGvC~~~LT~~EY-~~~~~Cp~C~spFNp~Ck~ 96 (105)
T COG4357 65 CGVCRKLLTRAEY-GMCGSCPYCQSPFNPGCKN 96 (105)
T ss_pred hhhhhhhhhHHHH-hhcCCCCCcCCCCCccccc
Confidence 7766666666665 3344599999998876653
No 222
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=29.06 E-value=7.7 Score=23.22 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=8.8
Q ss_pred CCcCccccccccC
Q 042990 71 DTECVICLSEFAA 83 (165)
Q Consensus 71 ~~~C~ICl~~~~~ 83 (165)
...|+.|.+.+..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 3578888885543
No 223
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=19 Score=29.75 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=35.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
....|-+|...+.-. .....|.|.|.-.|-..|....+.||.|+.-.
T Consensus 104 ~~~~~~~~~g~l~vp---t~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVP---TRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEec---ccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 456788888877542 12223899999999999999888898887643
No 224
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.68 E-value=26 Score=28.88 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=24.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
..|.||.....+.+.+-.-- |...||..|+-.
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVGL 346 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDV-CDRGPHTLCVGL 346 (381)
T ss_pred HhhhccCCcccchheecccc-ccCCCCcccccc
Confidence 45889998877766665554 889999988754
No 225
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.66 E-value=1.2e+02 Score=19.66 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 042990 4 SVLLCALICSLGLNSI 19 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i 19 (165)
++.+++++++++...+
T Consensus 7 ~~plivf~ifVap~WL 22 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWL 22 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 226
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.77 E-value=60 Score=26.45 Aligned_cols=20 Identities=25% Similarity=0.748 Sum_probs=15.4
Q ss_pred ccHhhHHHHH-hcCCCCCCCC
Q 042990 97 FHVRCIDKWL-SSHSSCPKCR 116 (165)
Q Consensus 97 FH~~Ci~~Wl-~~~~~CP~CR 116 (165)
-|++|+..|- ..+..||--|
T Consensus 57 GHrdCFEK~HlIanQ~~prsk 77 (285)
T PF06937_consen 57 GHRDCFEKYHLIANQDCPRSK 77 (285)
T ss_pred chHHHHHHHHHHHcCCCCccc
Confidence 5899999995 6678888443
No 227
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.55 E-value=91 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042990 2 VLSVLLCALICSLGLNSII 20 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~ 20 (165)
+++++++++++.+++.+++
T Consensus 2 ~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 228
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.24 E-value=36 Score=18.42 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=4.8
Q ss_pred CCCCCCCc
Q 042990 110 SSCPKCRH 117 (165)
Q Consensus 110 ~~CP~CR~ 117 (165)
..||+|.+
T Consensus 19 ~~CP~Cg~ 26 (34)
T cd00729 19 EKCPICGA 26 (34)
T ss_pred CcCcCCCC
Confidence 35777754
No 229
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=27.01 E-value=14 Score=29.93 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=21.3
Q ss_pred CCC-ccccHhhHHHHH--hcCCCCCCCCccc
Q 042990 92 KCN-HGFHVRCIDKWL--SSHSSCPKCRHCL 119 (165)
Q Consensus 92 ~C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~~ 119 (165)
.|. -.||..|+---. +.+-.||.|+...
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 488 899999987643 3456799998654
No 230
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=26.92 E-value=40 Score=23.58 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=7.5
Q ss_pred CcCcccccccc
Q 042990 72 TECVICLSEFA 82 (165)
Q Consensus 72 ~~C~ICl~~~~ 82 (165)
..|+-|..+|.
T Consensus 3 p~CP~C~seyt 13 (109)
T TIGR00686 3 PPCPKCNSEYT 13 (109)
T ss_pred CcCCcCCCcce
Confidence 46788877763
No 231
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=26.76 E-value=63 Score=29.61 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhh
Q 042990 1 MVLSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 1 vIl~ill~~ll~~~~l~~i~~~~~r 25 (165)
||+++++.++++++++++++.++.|
T Consensus 271 II~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 271 IIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred EEehHhHHHHHHHHHHHHHHHHHhc
Confidence 4566666555555555555544444
No 232
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=51 Score=30.29 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=32.7
Q ss_pred cCccccccccCCCeeeecCCCCc-cccHhhHHHHH--hc----CCCCCCCCccccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNH-GFHVRCIDKWL--SS----HSSCPKCRHCLIE 121 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl--~~----~~~CP~CR~~~~~ 121 (165)
.|+||-..++- +..- .||| ..+..|..+.. .. ...||+||..+..
T Consensus 2 ~c~ic~~s~~~---~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccc---cccc-cccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 58999887654 4444 4999 99999998875 23 3347999887664
No 233
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.47 E-value=22 Score=30.78 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=26.7
Q ss_pred CCcCccccccccCCCe-----eeecCCCCccccHhhHHHHHhc
Q 042990 71 DTECVICLSEFAAGDR-----LRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~-----~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
-..|+.|...++.+.. .... .|+|.||..|+..|-..
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~-~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSA-SCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccC-CcCCeeceeeecccccc
Confidence 3559999999876552 2222 39999999998888643
No 234
>PF15353 HECA: Headcase protein family homologue
Probab=26.46 E-value=39 Score=23.55 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=12.0
Q ss_pred CCccccHhhHHHH
Q 042990 93 CNHGFHVRCIDKW 105 (165)
Q Consensus 93 C~H~FH~~Ci~~W 105 (165)
.++..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 5799999999999
No 235
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=26.45 E-value=1.2e+02 Score=17.02 Aligned_cols=10 Identities=20% Similarity=-0.008 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 042990 14 LGLNSIIRCV 23 (165)
Q Consensus 14 ~~l~~i~~~~ 23 (165)
+.++.++.|+
T Consensus 21 v~imliif~f 30 (43)
T PF11395_consen 21 VIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 236
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=26.38 E-value=61 Score=28.58 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=21.7
Q ss_pred CCcCccccccccCCCeeeecCCCC-ccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCN-HGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
-.-|+-||+++...+....-..|. +-| .||.|-..+.-.
T Consensus 26 ~~yCp~CL~~~p~~e~~~~~nrC~r~Cf-------------~CP~C~~~L~~~ 65 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSEARSEKNRCSRNCF-------------DCPICFSPLSVR 65 (483)
T ss_pred eeECccccccCChhhheeccceeccccc-------------cCCCCCCcceeE
Confidence 356888888876543211111243 222 388887766644
No 237
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=26.21 E-value=1.5e+02 Score=18.46 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 042990 5 VLLCALICSLG 15 (165)
Q Consensus 5 ill~~ll~~~~ 15 (165)
|+++.++++++
T Consensus 13 VLLISfiIlfg 23 (59)
T PF11119_consen 13 VLLISFIILFG 23 (59)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 238
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=25.39 E-value=69 Score=17.77 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=23.2
Q ss_pred CCcCccccccccCCC-eeeecCCCCccccHhhHHH
Q 042990 71 DTECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~ 104 (165)
...|.+|.+.+.... ..+-. .|+-..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~-~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCS-WCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCC-CCCchHHHHHHhh
Confidence 457999999887532 23333 4888899998765
No 239
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=25.29 E-value=57 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
.|.||-+++-.|+.-..+.+ -..|.+|+.+=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999887777764 578999987754
No 240
>PRK11827 hypothetical protein; Provisional
Probab=24.86 E-value=29 Score=21.62 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=14.1
Q ss_pred HHHHhcCCCCCCCCcccccc
Q 042990 103 DKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 103 ~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+.|+..--.||.|+..+.-.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 34566666799998887753
No 241
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=24.17 E-value=50 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=16.3
Q ss_pred cCCCCccccHhhHHHHHhcCCCCCCCCccc
Q 042990 90 LPKCNHGFHVRCIDKWLSSHSSCPKCRHCL 119 (165)
Q Consensus 90 l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 119 (165)
.++|||+|+- -+..||.|..+.
T Consensus 32 C~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 32 CKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred cCCCCeEEcC--------CcccCCCCCCCC
Confidence 4469999984 455699998773
No 242
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.10 E-value=49 Score=17.63 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.2
Q ss_pred cCCCCCCCCc
Q 042990 108 SHSSCPKCRH 117 (165)
Q Consensus 108 ~~~~CP~CR~ 117 (165)
....||.|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3446888854
No 243
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=23.17 E-value=28 Score=24.20 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=6.0
Q ss_pred CCCccccHh
Q 042990 92 KCNHGFHVR 100 (165)
Q Consensus 92 ~C~H~FH~~ 100 (165)
+|||+|-..
T Consensus 7 rCG~vf~~g 15 (112)
T COG3364 7 RCGEVFDDG 15 (112)
T ss_pred ccccccccc
Confidence 388877753
No 244
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.09 E-value=41 Score=26.93 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=30.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCC--CC
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSS--CP 113 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~--CP 113 (165)
+-.|+|-+.++.. ++...+|+|.|-.+-|...++...+ ||
T Consensus 189 ~nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecc
Confidence 4579998777654 4555569999999999999875554 55
No 245
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.96 E-value=41 Score=17.88 Aligned_cols=24 Identities=33% Similarity=0.815 Sum_probs=7.4
Q ss_pred cCccccccccC-CCeeeecCCCCcc
Q 042990 73 ECVICLSEFAA-GDRLRLLPKCNHG 96 (165)
Q Consensus 73 ~C~ICl~~~~~-~~~~~~l~~C~H~ 96 (165)
.|+-|..++.- +..+-+.+.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 56777666541 1123334446664
No 246
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=22.80 E-value=31 Score=34.46 Aligned_cols=49 Identities=31% Similarity=0.589 Sum_probs=38.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHCL 119 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 119 (165)
..-.|-+|+...+....+-... |.-.||..|+..-+.. ...||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4568999999987755555554 9999999999998744 44799998766
No 247
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.11 E-value=30 Score=30.14 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhccC
Q 042990 19 IIRCVVRCSS 28 (165)
Q Consensus 19 i~~~~~r~~~ 28 (165)
++.|..++++
T Consensus 372 v~vc~~~rrr 381 (439)
T PF02480_consen 372 VWVCLRCRRR 381 (439)
T ss_dssp ----------
T ss_pred hheeeeehhc
Confidence 3344433333
No 248
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.87 E-value=1.4e+02 Score=22.63 Aligned_cols=18 Identities=28% Similarity=0.502 Sum_probs=13.8
Q ss_pred HhcCCCCCCCCccccccc
Q 042990 106 LSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 106 l~~~~~CP~CR~~~~~~~ 123 (165)
+..++.||.|-..+.+.+
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhcCCcCCCCCCCCeecc
Confidence 345888999998888743
No 249
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.86 E-value=1.4e+02 Score=18.17 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042990 2 VLSVLLCALICSLGLNSII 20 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~ 20 (165)
|++.++.++++++++..+.
T Consensus 34 Ii~gii~~~~fV~~Lv~lV 52 (56)
T PF11174_consen 34 IIVGIILAALFVAGLVLLV 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 250
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.48 E-value=91 Score=21.37 Aligned_cols=36 Identities=14% Similarity=0.450 Sum_probs=28.3
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
...|.||-+++..|+.-.-.+ .-..|.+|+.+=.++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHhc
Confidence 357999999999998877765 456899998886544
No 251
>PRK10220 hypothetical protein; Provisional
Probab=21.11 E-value=73 Score=22.35 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=7.1
Q ss_pred CcCcccccccc
Q 042990 72 TECVICLSEFA 82 (165)
Q Consensus 72 ~~C~ICl~~~~ 82 (165)
..|+-|..+|.
T Consensus 4 P~CP~C~seyt 14 (111)
T PRK10220 4 PHCPKCNSEYT 14 (111)
T ss_pred CcCCCCCCcce
Confidence 45777777653
No 252
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=21.00 E-value=74 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=18.4
Q ss_pred HhhHHHHHhcCCCCCCCCcccccc
Q 042990 99 VRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 99 ~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..=+..|.+.++.||.|-..+...
T Consensus 89 a~~l~~w~~~~~fC~~CG~~~~~~ 112 (256)
T PRK00241 89 AVQLAEFYRSHRFCGYCGHPMHPS 112 (256)
T ss_pred HHHHHHHhhcCccccccCCCCeec
Confidence 345778888899999998876654
No 253
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.70 E-value=65 Score=23.26 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=7.8
Q ss_pred CCCCCCCCcccccc
Q 042990 109 HSSCPKCRHCLIET 122 (165)
Q Consensus 109 ~~~CP~CR~~~~~~ 122 (165)
...||.|-..+...
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 33577776655443
No 254
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.70 E-value=1.9e+02 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042990 6 LLCALICSLGLNSIIRC 22 (165)
Q Consensus 6 ll~~ll~~~~l~~i~~~ 22 (165)
+.+++.+.++++.+++.
T Consensus 55 l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 55 LAAILVLLLAFYAFFYL 71 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 255
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.65 E-value=85 Score=17.89 Aligned_cols=17 Identities=29% Similarity=0.851 Sum_probs=12.6
Q ss_pred HHhcCCCCCCCCccccc
Q 042990 105 WLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 105 Wl~~~~~CP~CR~~~~~ 121 (165)
|-.-...||.|..++.+
T Consensus 13 ~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 13 WTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhcCccCCCCCeeEE
Confidence 44446679999888887
No 256
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.55 E-value=2.4e+02 Score=17.96 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042990 6 LLCALICSLGLNSII 20 (165)
Q Consensus 6 ll~~ll~~~~l~~i~ 20 (165)
++.++++++.+.++.
T Consensus 5 ~iLi~ICVaii~lIl 19 (68)
T PF05961_consen 5 FILIIICVAIIGLIL 19 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 257
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.41 E-value=99 Score=18.38 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=8.5
Q ss_pred CcCccccccccC
Q 042990 72 TECVICLSEFAA 83 (165)
Q Consensus 72 ~~C~ICl~~~~~ 83 (165)
..|.+|.-.|.+
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 367888777765
No 258
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.34 E-value=41 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCCccccHhhHHHHHh---cCCCCCCCCccc
Q 042990 92 KCNHGFHVRCIDKWLS---SHSSCPKCRHCL 119 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~~ 119 (165)
.|.|.||..-+.+.-. ....||.|..-.
T Consensus 194 IC~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 194 ICPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred ccccccccccccccccccchheecccchhhc
Confidence 3888888765555421 245799996643
No 259
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=20.19 E-value=1.8e+02 Score=19.74 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042990 4 SVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i~~~~~r 25 (165)
+|+++.+++++++.++...+.+
T Consensus 53 GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 53 GILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555544443
No 260
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.19 E-value=74 Score=27.80 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=21.7
Q ss_pred CcCccccccccCCC---eeeecCCCCccccHhhHHHH
Q 042990 72 TECVICLSEFAAGD---RLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 72 ~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~W 105 (165)
-.|.||.. |.... ..+....|||.-|.+|-.+-
T Consensus 129 C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 129 CMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CCccccCC-cccCCCCeeEEeccCCCceehhhhhccc
Confidence 46888855 65432 23333459999999997663
No 261
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=48 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=18.2
Q ss_pred HhhHHHHHh-cCCCCCCCCccccccccc
Q 042990 99 VRCIDKWLS-SHSSCPKCRHCLIETCQK 125 (165)
Q Consensus 99 ~~Ci~~Wl~-~~~~CP~CR~~~~~~~~~ 125 (165)
+.||.+--. .++-||+||....--+.+
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~DyR 124 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYFDYR 124 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEEecc
Confidence 567776432 355699999987765553
Done!