Query 042990
Match_columns 165
No_of_seqs 131 out of 1509
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.2E-19 4.2E-24 122.7 8.0 84 37-121 6-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 7.9E-18 2.7E-22 109.5 3.6 69 52-122 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 6.3E-17 2.2E-21 98.9 4.5 52 69-120 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 3.2E-16 1.1E-20 101.4 5.6 53 69-122 13-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 7E-16 2.4E-20 98.5 5.3 53 69-122 12-64 (69)
6 2ecl_A Ring-box protein 2; RNF 99.6 3.5E-16 1.2E-20 103.5 3.9 53 70-122 14-77 (81)
7 2ect_A Ring finger protein 126 99.6 1E-15 3.5E-20 100.0 5.9 53 69-122 13-65 (78)
8 2ecm_A Ring finger and CHY zin 99.5 5.1E-15 1.8E-19 90.2 4.7 50 70-120 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.4E-19 100.8 5.3 52 70-122 24-95 (114)
10 3dpl_R Ring-box protein 1; ubi 99.5 1.4E-14 4.7E-19 100.6 4.8 51 70-121 36-101 (106)
11 3ng2_A RNF4, snurf, ring finge 99.5 7.6E-15 2.6E-19 93.9 3.2 53 69-122 8-64 (71)
12 2ea6_A Ring finger protein 4; 99.5 1.8E-14 6.2E-19 91.5 4.2 52 69-121 13-68 (69)
13 2xeu_A Ring finger protein 4; 99.5 1.2E-14 4.2E-19 90.9 2.9 52 70-122 2-57 (64)
14 2d8s_A Cellular modulator of i 99.5 3E-14 1E-18 94.0 4.8 53 68-122 12-71 (80)
15 2d8t_A Dactylidin, ring finger 99.4 4E-14 1.4E-18 90.9 3.5 50 69-122 13-62 (71)
16 1chc_A Equine herpes virus-1 r 99.4 1.1E-13 3.7E-18 87.9 5.2 50 70-122 4-53 (68)
17 2ecn_A Ring finger protein 141 99.4 2.5E-14 8.5E-19 91.4 2.0 50 69-123 13-62 (70)
18 2djb_A Polycomb group ring fin 99.4 1.2E-13 3.9E-18 89.0 4.6 50 69-122 13-63 (72)
19 2ct2_A Tripartite motif protei 99.4 2.9E-13 1E-17 89.8 6.5 52 69-121 13-68 (88)
20 4a0k_B E3 ubiquitin-protein li 99.4 1.8E-14 6.2E-19 101.5 0.3 52 70-121 47-112 (117)
21 2yur_A Retinoblastoma-binding 99.4 3E-13 1E-17 87.5 5.0 52 69-123 13-66 (74)
22 2csy_A Zinc finger protein 183 99.4 3.8E-13 1.3E-17 88.4 4.9 48 69-120 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.4 5.5E-13 1.9E-17 85.6 5.1 50 69-122 18-70 (73)
24 2ct0_A Non-SMC element 1 homol 99.4 5.9E-13 2E-17 86.5 5.0 50 70-122 14-65 (74)
25 2ecy_A TNF receptor-associated 99.4 4.3E-13 1.5E-17 84.8 4.2 50 69-122 13-63 (66)
26 4ayc_A E3 ubiquitin-protein li 99.3 3.6E-13 1.2E-17 97.2 3.3 48 70-121 52-99 (138)
27 3lrq_A E3 ubiquitin-protein li 99.3 1.1E-12 3.8E-17 89.7 3.9 49 70-122 21-71 (100)
28 1t1h_A Gspef-atpub14, armadill 99.3 2.6E-12 8.7E-17 83.6 4.8 49 69-121 6-55 (78)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.9E-17 92.4 3.9 54 70-124 6-63 (133)
30 2ecw_A Tripartite motif-contai 99.3 2.9E-12 1E-16 84.1 5.1 49 69-121 17-71 (85)
31 2ysj_A Tripartite motif-contai 99.3 3E-12 1E-16 80.0 4.9 43 69-115 18-63 (63)
32 2ecv_A Tripartite motif-contai 99.3 3.1E-12 1E-16 84.0 4.9 49 69-121 17-71 (85)
33 1g25_A CDK-activating kinase a 99.3 2.3E-12 7.7E-17 81.2 4.0 52 70-122 2-56 (65)
34 2egp_A Tripartite motif-contai 99.3 8.2E-13 2.8E-17 86.0 1.5 49 69-121 10-65 (79)
35 2y43_A E3 ubiquitin-protein li 99.3 2.8E-12 9.7E-17 87.2 4.1 48 70-121 21-69 (99)
36 2ecj_A Tripartite motif-contai 99.3 4.2E-12 1.4E-16 77.8 4.1 43 69-115 13-58 (58)
37 2ckl_A Polycomb group ring fin 99.2 3.8E-12 1.3E-16 88.0 3.7 49 70-122 14-63 (108)
38 4ap4_A E3 ubiquitin ligase RNF 99.2 3.6E-12 1.2E-16 90.3 3.5 53 69-122 70-126 (133)
39 3ztg_A E3 ubiquitin-protein li 99.2 1.3E-11 4.4E-16 82.7 4.8 49 69-120 11-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 87.8 4.4 48 70-121 51-99 (124)
41 1e4u_A Transcriptional repress 99.2 3.4E-11 1.2E-15 78.9 5.9 55 69-124 9-65 (78)
42 2ckl_B Ubiquitin ligase protei 99.2 2.1E-11 7E-16 90.3 4.4 48 70-121 53-102 (165)
43 1jm7_A BRCA1, breast cancer ty 99.1 2.3E-11 7.8E-16 84.1 4.0 49 70-122 20-71 (112)
44 3hct_A TNF receptor-associated 99.1 2.6E-11 8.9E-16 85.1 3.6 50 69-122 16-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.1 3.2E-11 1.1E-15 84.2 3.9 49 70-122 22-71 (116)
46 1z6u_A NP95-like ring finger p 99.1 5.2E-11 1.8E-15 87.2 4.3 49 70-122 77-126 (150)
47 2vje_A E3 ubiquitin-protein li 99.1 5.2E-11 1.8E-15 75.0 3.2 48 70-121 7-57 (64)
48 3l11_A E3 ubiquitin-protein li 99.1 2.2E-11 7.4E-16 85.0 1.1 48 70-121 14-62 (115)
49 2y1n_A E3 ubiquitin-protein li 99.1 1.3E-10 4.5E-15 96.7 5.7 50 70-123 331-381 (389)
50 2kr4_A Ubiquitin conjugation f 99.0 2.1E-10 7.2E-15 76.1 5.1 48 70-121 13-60 (85)
51 1bor_A Transcription factor PM 99.0 7.1E-11 2.4E-15 72.3 2.3 47 69-122 4-50 (56)
52 3knv_A TNF receptor-associated 99.0 7.6E-11 2.6E-15 85.5 2.2 49 69-121 29-78 (141)
53 2vje_B MDM4 protein; proto-onc 99.0 1.5E-10 5E-15 72.7 2.9 48 70-121 6-56 (63)
54 2kre_A Ubiquitin conjugation f 99.0 2.6E-10 9E-15 78.0 4.2 48 70-121 28-75 (100)
55 1wgm_A Ubiquitin conjugation f 99.0 3.8E-10 1.3E-14 76.9 4.9 48 70-121 21-69 (98)
56 1jm7_B BARD1, BRCA1-associated 98.9 1.9E-10 6.6E-15 80.5 2.0 45 70-120 21-66 (117)
57 3k1l_B Fancl; UBC, ring, RWD, 98.9 3.7E-10 1.3E-14 92.3 2.5 54 69-122 306-374 (381)
58 4ic3_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 72.9 1.8 45 70-122 23-68 (74)
59 3hcs_A TNF receptor-associated 98.9 1.2E-09 4.1E-14 81.0 3.6 50 69-122 16-66 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.4E-09 8.2E-14 66.6 3.8 48 69-120 4-58 (60)
61 2yu4_A E3 SUMO-protein ligase 98.8 3.3E-09 1.1E-13 71.5 4.4 46 70-118 6-59 (94)
62 2c2l_A CHIP, carboxy terminus 98.8 3.9E-09 1.3E-13 83.2 4.9 48 70-121 207-255 (281)
63 1wim_A KIAA0161 protein; ring 98.7 5.3E-09 1.8E-13 70.3 3.3 51 70-121 4-66 (94)
64 2ecg_A Baculoviral IAP repeat- 98.7 7E-09 2.4E-13 66.9 2.8 44 70-121 24-68 (75)
65 2ea5_A Cell growth regulator w 98.7 2E-08 6.7E-13 63.8 4.8 46 69-122 13-59 (68)
66 2f42_A STIP1 homology and U-bo 98.6 1.7E-08 5.7E-13 75.9 4.1 49 69-121 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.6 8.5E-09 2.9E-13 67.4 1.3 45 70-122 17-62 (79)
68 2bay_A PRE-mRNA splicing facto 98.5 7.7E-08 2.6E-12 59.8 3.3 48 71-122 3-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 4.5E-08 1.6E-12 80.5 1.8 44 70-121 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1.1E-07 3.8E-12 75.1 3.5 49 70-121 180-232 (267)
71 3nw0_A Non-structural maintena 98.2 1.4E-06 4.7E-11 68.2 4.5 50 70-122 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.0 3.5E-06 1.2E-10 56.9 3.7 49 73-124 3-52 (101)
73 2ko5_A Ring finger protein Z; 97.1 0.00063 2.1E-08 45.3 4.1 45 71-121 28-73 (99)
74 1wil_A KIAA1045 protein; ring 96.1 0.0079 2.7E-07 39.2 4.2 35 69-105 13-47 (89)
75 2lri_C Autoimmune regulator; Z 95.8 0.0076 2.6E-07 37.6 3.2 47 69-119 10-60 (66)
76 1we9_A PHD finger family prote 95.2 0.0034 1.2E-07 38.6 0.1 49 69-117 4-57 (64)
77 2jun_A Midline-1; B-BOX, TRIM, 94.8 0.022 7.7E-07 37.7 3.3 34 71-105 3-36 (101)
78 3lqh_A Histone-lysine N-methyl 94.2 0.023 7.9E-07 42.4 2.4 49 72-120 3-65 (183)
79 2k16_A Transcription initiatio 93.8 0.014 4.7E-07 37.0 0.5 51 70-121 17-71 (75)
80 2vpb_A Hpygo1, pygopus homolog 93.6 0.057 2E-06 33.4 3.0 36 69-104 6-42 (65)
81 2kgg_A Histone demethylase jar 93.1 0.038 1.3E-06 32.5 1.6 44 73-116 4-52 (52)
82 1wep_A PHF8; structural genomi 93.0 0.099 3.4E-06 33.4 3.6 48 71-119 12-64 (79)
83 2ysm_A Myeloid/lymphoid or mix 92.6 0.044 1.5E-06 37.2 1.5 47 69-116 5-55 (111)
84 2l5u_A Chromodomain-helicase-D 92.0 0.095 3.2E-06 31.8 2.4 45 69-117 9-57 (61)
85 3o36_A Transcription intermedi 91.6 0.053 1.8E-06 40.1 1.1 46 70-119 3-52 (184)
86 3u5n_A E3 ubiquitin-protein li 91.2 0.057 2E-06 40.7 1.0 47 69-119 5-55 (207)
87 2lbm_A Transcriptional regulat 91.1 0.28 9.5E-06 35.0 4.4 47 68-118 60-117 (142)
88 1mm2_A MI2-beta; PHD, zinc fin 90.9 0.068 2.3E-06 32.5 0.9 48 69-120 7-58 (61)
89 2xb1_A Pygopus homolog 2, B-ce 90.9 0.15 5.2E-06 34.4 2.8 49 71-119 3-62 (105)
90 1f62_A Transcription factor WS 90.2 0.15 5.2E-06 29.5 2.0 44 73-117 2-49 (51)
91 2ri7_A Nucleosome-remodeling f 89.6 0.059 2E-06 39.3 -0.2 48 70-118 7-59 (174)
92 2l43_A N-teminal domain from h 89.5 0.039 1.3E-06 36.2 -1.1 50 69-118 23-75 (88)
93 3ql9_A Transcriptional regulat 88.5 0.67 2.3E-05 32.5 4.6 47 69-119 55-112 (129)
94 2puy_A PHD finger protein 21A; 88.3 0.044 1.5E-06 33.1 -1.5 48 70-121 4-55 (60)
95 3v43_A Histone acetyltransfera 88.0 0.89 3.1E-05 30.7 4.9 47 70-116 4-62 (112)
96 1wev_A Riken cDNA 1110020M19; 87.7 0.095 3.2E-06 34.3 -0.2 51 70-120 15-74 (88)
97 2yt5_A Metal-response element- 87.7 0.35 1.2E-05 29.4 2.5 49 69-117 4-60 (66)
98 1wem_A Death associated transc 87.5 0.18 6.1E-06 31.8 1.0 46 71-118 16-70 (76)
99 1xwh_A Autoimmune regulator; P 86.7 0.1 3.5E-06 32.1 -0.4 46 69-118 6-55 (66)
100 3o70_A PHD finger protein 13; 86.4 0.14 4.7E-06 31.9 0.0 46 70-117 18-66 (68)
101 2yql_A PHD finger protein 21A; 85.7 0.079 2.7E-06 31.5 -1.3 44 69-116 7-54 (56)
102 1fp0_A KAP-1 corepressor; PHD 85.5 0.55 1.9E-05 30.7 2.6 46 69-118 23-72 (88)
103 2lv9_A Histone-lysine N-methyl 85.3 0.31 1.1E-05 32.4 1.4 44 72-117 29-75 (98)
104 3v43_A Histone acetyltransfera 84.6 0.29 9.9E-06 33.2 1.0 45 73-117 63-111 (112)
105 1weo_A Cellulose synthase, cat 84.5 2.3 8E-05 27.8 5.2 51 70-120 15-69 (93)
106 2cs3_A Protein C14ORF4, MY039 83.8 2.3 7.9E-05 27.3 4.9 39 70-108 14-52 (93)
107 1weu_A Inhibitor of growth fam 83.7 0.63 2.1E-05 30.6 2.3 46 70-118 35-85 (91)
108 1wen_A Inhibitor of growth fam 83.3 0.85 2.9E-05 28.4 2.7 46 70-118 15-65 (71)
109 2kwj_A Zinc finger protein DPF 83.2 0.96 3.3E-05 30.7 3.2 45 72-116 2-59 (114)
110 2ks1_B Epidermal growth factor 83.0 2.6 9.1E-05 23.8 4.4 23 4-26 16-38 (44)
111 2ku3_A Bromodomain-containing 82.6 1.5 5.1E-05 27.3 3.7 49 69-117 14-65 (71)
112 2ro1_A Transcription intermedi 82.3 0.35 1.2E-05 35.9 0.7 44 71-118 2-49 (189)
113 3m62_A Ubiquitin conjugation f 79.9 1.6 5.3E-05 40.2 4.2 48 70-121 890-938 (968)
114 1vfy_A Phosphatidylinositol-3- 79.4 1.6 5.4E-05 27.2 3.0 33 71-103 11-43 (73)
115 3o7a_A PHD finger protein 13 v 78.4 0.31 1.1E-05 28.4 -0.6 41 76-117 8-51 (52)
116 2e6s_A E3 ubiquitin-protein li 78.3 0.73 2.5E-05 29.2 1.1 46 71-117 26-76 (77)
117 2knc_A Integrin alpha-IIB; tra 77.8 5.2 0.00018 23.6 4.7 24 2-25 16-39 (54)
118 2yw8_A RUN and FYVE domain-con 77.7 1.7 5.9E-05 27.6 2.8 35 70-104 18-52 (82)
119 4gne_A Histone-lysine N-methyl 77.2 1.6 5.5E-05 29.5 2.7 46 69-120 13-64 (107)
120 2l2t_A Receptor tyrosine-prote 76.7 4.1 0.00014 23.0 3.8 16 10-25 21-36 (44)
121 3shb_A E3 ubiquitin-protein li 76.1 0.47 1.6E-05 30.2 -0.3 44 73-117 28-76 (77)
122 2l8s_A Integrin alpha-1; trans 75.6 5 0.00017 23.6 4.2 24 2-25 13-36 (54)
123 1wee_A PHD finger family prote 75.5 1.4 4.7E-05 27.3 1.8 46 71-117 16-65 (72)
124 1z2q_A LM5-1; membrane protein 74.4 2.8 9.4E-05 26.8 3.1 36 70-105 20-55 (84)
125 1dvp_A HRS, hepatocyte growth 74.0 1.8 6.3E-05 32.5 2.5 35 70-104 160-194 (220)
126 1wfk_A Zinc finger, FYVE domai 73.4 3.1 0.0001 26.9 3.2 51 70-120 8-65 (88)
127 2jwa_A Receptor tyrosine-prote 73.3 6.1 0.00021 22.3 4.0 7 20-26 32-38 (44)
128 1zfo_A LAsp-1; LIM domain, zin 73.2 1.2 4.1E-05 23.0 0.9 28 72-102 4-31 (31)
129 3zyq_A Hepatocyte growth facto 72.9 2.1 7.1E-05 32.5 2.6 36 70-105 163-198 (226)
130 1joc_A EEA1, early endosomal a 72.9 2.5 8.5E-05 29.2 2.8 34 71-104 69-102 (125)
131 1y02_A CARP2, FYVE-ring finger 72.1 0.42 1.5E-05 33.1 -1.3 46 71-116 19-64 (120)
132 3asl_A E3 ubiquitin-protein li 72.0 0.93 3.2E-05 28.1 0.4 44 73-117 20-68 (70)
133 3c6w_A P28ING5, inhibitor of g 71.5 0.87 3E-05 27.3 0.1 45 70-117 8-57 (59)
134 1wew_A DNA-binding family prot 71.4 4 0.00014 25.6 3.3 48 70-118 15-72 (78)
135 3t7l_A Zinc finger FYVE domain 71.4 2.7 9.1E-05 27.3 2.5 36 71-106 20-55 (90)
136 2e6r_A Jumonji/ARID domain-con 71.2 1.6 5.3E-05 28.6 1.3 48 70-118 15-66 (92)
137 3ask_A E3 ubiquitin-protein li 70.5 1.3 4.4E-05 34.0 0.9 45 72-117 175-224 (226)
138 1x4u_A Zinc finger, FYVE domai 70.4 3.7 0.00013 26.1 3.0 34 70-103 13-46 (84)
139 1g47_A Pinch protein; LIM doma 66.3 7.6 0.00026 23.5 3.8 43 70-122 10-52 (77)
140 2vnf_A ING 4, P29ING4, inhibit 66.1 0.9 3.1E-05 27.3 -0.6 43 70-117 9-58 (60)
141 2cu8_A Cysteine-rich protein 2 65.8 5.8 0.0002 24.1 3.2 41 70-121 8-48 (76)
142 3kqi_A GRC5, PHD finger protei 63.9 4.2 0.00014 25.3 2.2 47 72-119 11-62 (75)
143 3f6q_B LIM and senescent cell 63.8 5.8 0.0002 23.5 2.9 43 70-122 10-52 (72)
144 2jo1_A Phospholemman; FXYD1, N 62.0 16 0.00054 22.6 4.5 18 3-20 19-36 (72)
145 2g6q_A Inhibitor of growth pro 62.0 0.75 2.6E-05 27.9 -1.6 45 70-117 10-59 (62)
146 2o35_A Hypothetical protein DU 61.8 3.1 0.00011 27.7 1.3 13 96-108 42-54 (105)
147 2co8_A NEDD9 interacting prote 61.4 8.9 0.00031 23.8 3.5 42 70-122 14-55 (82)
148 2ysm_A Myeloid/lymphoid or mix 61.3 1.1 3.8E-05 30.0 -1.0 44 73-117 56-103 (111)
149 3fyb_A Protein of unknown func 61.2 3.2 0.00011 27.6 1.3 12 96-107 41-52 (104)
150 2dj7_A Actin-binding LIM prote 60.3 9.5 0.00033 23.6 3.5 40 70-120 14-53 (80)
151 1wyh_A SLIM 2, skeletal muscle 60.3 8.2 0.00028 23.0 3.1 41 71-121 5-45 (72)
152 1x4k_A Skeletal muscle LIM-pro 60.3 8.5 0.00029 22.9 3.2 41 71-121 5-45 (72)
153 1iml_A CRIP, cysteine rich int 58.2 6.5 0.00022 23.9 2.4 11 73-83 29-39 (76)
154 1zbd_B Rabphilin-3A; G protein 58.1 7 0.00024 27.3 2.8 35 69-103 53-88 (134)
155 3a1b_A DNA (cytosine-5)-methyl 57.2 10 0.00035 27.3 3.5 35 69-107 77-113 (159)
156 1z60_A TFIIH basal transcripti 57.1 5.6 0.00019 23.9 1.8 43 72-115 16-58 (59)
157 1x63_A Skeletal muscle LIM-pro 56.6 12 0.00042 22.8 3.5 41 71-121 15-55 (82)
158 2gmg_A Hypothetical protein PF 56.5 2.5 8.5E-05 28.5 0.2 28 92-124 72-99 (105)
159 3kv4_A PHD finger protein 8; e 56.2 1.9 6.5E-05 36.3 -0.6 47 74-120 7-58 (447)
160 2d8v_A Zinc finger FYVE domain 55.6 9.6 0.00033 23.4 2.7 32 69-105 6-38 (67)
161 2k1a_A Integrin alpha-IIB; sin 54.5 12 0.00041 20.8 2.8 22 2-23 14-35 (42)
162 1x61_A Thyroid receptor intera 54.3 12 0.0004 22.3 3.1 40 71-120 5-44 (72)
163 3mpx_A FYVE, rhogef and PH dom 52.8 2.9 9.9E-05 34.3 0.0 36 71-106 375-410 (434)
164 1x64_A Alpha-actinin-2 associa 52.5 16 0.00053 22.9 3.6 40 70-121 24-63 (89)
165 1x4l_A Skeletal muscle LIM-pro 51.9 17 0.00057 21.6 3.5 40 71-120 5-46 (72)
166 2l9u_A Receptor tyrosine-prote 51.2 16 0.00055 19.5 2.8 23 3-25 10-32 (40)
167 2klu_A T-cell surface glycopro 51.1 11 0.00039 23.1 2.5 7 93-99 59-65 (70)
168 2d8y_A Eplin protein; LIM doma 50.0 16 0.00055 22.9 3.3 40 71-121 15-54 (91)
169 2knc_B Integrin beta-3; transm 49.9 16 0.00054 23.1 3.2 18 4-21 16-33 (79)
170 1x68_A FHL5 protein; four-and- 49.5 15 0.00052 22.1 3.1 40 71-120 5-46 (76)
171 2pv0_B DNA (cytosine-5)-methyl 49.3 13 0.00043 30.7 3.3 46 69-118 91-148 (386)
172 2rsd_A E3 SUMO-protein ligase 48.9 7.6 0.00026 23.5 1.5 45 72-117 11-64 (68)
173 3i2d_A E3 SUMO-protein ligase 48.2 21 0.00072 29.2 4.4 47 72-121 250-300 (371)
174 2l3k_A Rhombotin-2, linker, LI 47.7 13 0.00044 24.9 2.7 11 73-83 10-20 (123)
175 2cor_A Pinch protein; LIM doma 47.3 19 0.00064 22.1 3.2 41 70-122 14-54 (79)
176 2zet_C Melanophilin; complex, 47.3 11 0.00036 27.0 2.3 32 70-102 67-100 (153)
177 4fo9_A E3 SUMO-protein ligase 46.9 21 0.00071 29.1 4.2 46 72-120 216-265 (360)
178 2l4z_A DNA endonuclease RBBP8, 45.3 16 0.00054 24.7 2.9 39 71-120 61-99 (123)
179 3kv5_D JMJC domain-containing 44.4 13 0.00043 31.6 2.7 47 72-119 38-89 (488)
180 1iij_A ERBB-2 receptor protein 43.9 10 0.00035 20.3 1.3 6 20-25 28-33 (35)
181 2kwj_A Zinc finger protein DPF 40.8 11 0.00039 25.1 1.5 46 73-119 60-109 (114)
182 1x62_A C-terminal LIM domain p 40.4 29 0.00099 21.0 3.3 40 70-121 14-53 (79)
183 2ku7_A MLL1 PHD3-CYP33 RRM chi 39.8 45 0.0015 22.0 4.6 28 92-119 7-45 (140)
184 2k9j_B Integrin beta-3; transm 39.6 34 0.0012 18.9 3.2 21 4-24 15-35 (43)
185 1a7i_A QCRP2 (LIM1); LIM domai 39.2 10 0.00034 23.3 1.0 40 71-121 7-46 (81)
186 1afo_A Glycophorin A; integral 39.1 36 0.0012 18.5 3.0 22 3-24 13-34 (40)
187 2jp3_A FXYD domain-containing 39.0 23 0.0008 21.6 2.5 18 3-20 20-37 (67)
188 2d8x_A Protein pinch; LIM doma 38.8 37 0.0012 19.9 3.6 39 71-121 5-43 (70)
189 2ehe_A Four and A half LIM dom 38.4 27 0.00092 21.2 3.0 41 71-121 15-55 (82)
190 1nyp_A Pinch protein; LIM doma 37.3 20 0.0007 20.8 2.2 39 71-121 5-43 (66)
191 1v6g_A Actin binding LIM prote 37.0 33 0.0011 20.8 3.2 39 71-121 15-53 (81)
192 2egq_A FHL1 protein; LIM domai 36.7 28 0.00097 20.8 2.8 41 71-121 15-58 (77)
193 2jne_A Hypothetical protein YF 36.0 11 0.00039 24.9 0.8 41 72-121 33-73 (101)
194 2jvx_A NF-kappa-B essential mo 36.0 7.8 0.00027 19.6 0.0 12 109-120 3-14 (28)
195 2zxe_G FXYD10, phospholemman-l 35.4 18 0.00061 22.6 1.6 18 3-20 22-39 (74)
196 2jmo_A Parkin; IBR, E3 ligase, 34.8 5.5 0.00019 25.1 -0.8 16 92-107 55-70 (80)
197 1j2o_A FLIN2, fusion of rhombo 34.7 36 0.0012 22.3 3.3 34 72-107 31-65 (114)
198 1wig_A KIAA1808 protein; LIM d 34.6 36 0.0012 20.3 3.1 38 71-120 5-42 (73)
199 2dar_A PDZ and LIM domain prot 34.4 24 0.00083 22.0 2.3 40 70-121 24-63 (90)
200 3mjh_B Early endosome antigen 34.4 11 0.00039 19.9 0.5 14 71-84 5-18 (34)
201 2d8z_A Four and A half LIM dom 33.9 30 0.001 20.2 2.6 38 71-120 5-42 (70)
202 2jrp_A Putative cytoplasmic pr 33.6 21 0.00073 22.7 1.8 13 72-84 3-15 (81)
203 1rut_X Flinc4, fusion protein 33.6 27 0.00094 25.1 2.7 28 73-102 71-98 (188)
204 2lcq_A Putative toxin VAPC6; P 33.0 13 0.00043 26.4 0.8 26 92-123 137-162 (165)
205 2jmi_A Protein YNG1, ING1 homo 32.6 23 0.00077 22.9 1.9 45 70-117 25-75 (90)
206 2l34_A TYRO protein tyrosine k 32.5 56 0.0019 17.0 3.4 19 5-23 12-30 (33)
207 2pk7_A Uncharacterized protein 32.4 11 0.00037 23.2 0.3 20 103-122 2-21 (69)
208 2cur_A Skeletal muscle LIM-pro 31.3 38 0.0013 19.7 2.7 38 71-120 5-42 (69)
209 2das_A Zinc finger MYM-type pr 31.1 54 0.0019 19.6 3.2 36 70-105 19-55 (62)
210 1x4i_A Inhibitor of growth pro 31.0 46 0.0016 20.2 3.0 48 70-120 5-57 (70)
211 2kpi_A Uncharacterized protein 30.6 16 0.00056 21.4 0.9 13 71-83 10-22 (56)
212 2jtn_A LIM domain-binding prot 30.3 25 0.00087 25.1 2.1 44 72-121 88-131 (182)
213 1m3v_A FLIN4, fusion of the LI 29.6 60 0.0021 21.4 3.8 51 72-123 33-83 (122)
214 2iyb_E Testin, TESS, TES; LIM 29.1 37 0.0013 19.7 2.4 39 72-120 3-43 (65)
215 2cup_A Skeletal muscle LIM-pro 28.8 26 0.00089 22.2 1.7 30 71-102 66-95 (101)
216 2cuq_A Four and A half LIM dom 27.8 47 0.0016 19.9 2.8 38 71-120 15-52 (80)
217 2jny_A Uncharacterized BCR; st 27.0 10 0.00035 23.2 -0.5 20 103-122 4-23 (67)
218 1x3h_A Leupaxin; paxillin fami 26.4 60 0.0021 19.4 3.1 39 71-121 15-53 (80)
219 2csz_A Synaptotagmin-like prot 26.2 41 0.0014 21.1 2.2 33 69-101 23-56 (76)
220 2fiy_A Protein FDHE homolog; F 24.7 6.6 0.00023 31.3 -2.2 48 70-118 181-231 (309)
221 1b8t_A Protein (CRP1); LIM dom 24.5 48 0.0016 23.8 2.7 39 71-120 115-153 (192)
222 2ct7_A Ring finger protein 31; 24.4 8.1 0.00028 24.5 -1.4 18 88-105 44-61 (86)
223 2dlo_A Thyroid receptor-intera 24.3 42 0.0014 20.3 2.1 39 71-121 15-53 (81)
224 2xjy_A Rhombotin-2; oncoprotei 23.0 60 0.002 21.5 2.8 48 72-121 30-78 (131)
225 2lq6_A Bromodomain-containing 22.1 47 0.0016 21.1 1.9 33 71-104 17-50 (87)
226 1wd2_A Ariadne-1 protein homol 20.2 28 0.00095 20.6 0.5 13 109-121 6-18 (60)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=122.67 Aligned_cols=84 Identities=27% Similarity=0.664 Sum_probs=74.1
Q ss_pred CCccccCCCCCCCHHHhhcCCeEeeccccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 37 SNSAAILPNKGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
..........+++++.++.+|...+.......+.+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||
T Consensus 6 ~~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 6 HHHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp CCSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred ccCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcC
Confidence 3555667788999999999999999876655667789999999999999999998 999999999999999999999999
Q ss_pred ccccc
Q 042990 117 HCLIE 121 (165)
Q Consensus 117 ~~~~~ 121 (165)
..+..
T Consensus 85 ~~~~~ 89 (91)
T 2l0b_A 85 CMFPP 89 (91)
T ss_dssp CBSSC
T ss_pred ccCCC
Confidence 98764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-18 Score=109.51 Aligned_cols=69 Identities=35% Similarity=0.834 Sum_probs=57.9
Q ss_pred HhhcCCeEeeccccccCCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 52 ALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 52 ~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.++.+|..++.... ....+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+.+.
T Consensus 5 ~i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 35677877776543 2345689999999999988899998 999999999999999999999999988753
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=6.3e-17 Score=98.91 Aligned_cols=52 Identities=48% Similarity=1.204 Sum_probs=47.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
+++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999999998888888679999999999999999999999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=101.42 Aligned_cols=53 Identities=36% Similarity=0.946 Sum_probs=48.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..+..|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 45789999999999988888888 999999999999999888999999998764
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=98.49 Aligned_cols=53 Identities=40% Similarity=0.934 Sum_probs=47.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999999888888998 999999999999999889999999988754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=103.46 Aligned_cols=53 Identities=26% Similarity=0.693 Sum_probs=43.5
Q ss_pred CCCcCccccccccC-----------CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAA-----------GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+++.|+||+++|.+ ++.++.++.|+|.||.+||.+|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888888854 455666656999999999999999999999999998754
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1e-15 Score=100.02 Aligned_cols=53 Identities=47% Similarity=1.049 Sum_probs=48.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..+..|+||++.|..+..+..++ |+|.||..||.+|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45689999999999888888888 999999999999999889999999998864
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=5.1e-15 Score=90.21 Aligned_cols=50 Identities=28% Similarity=0.629 Sum_probs=43.2
Q ss_pred CCCcCccccccccCCC-eeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGD-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.+..|+||++.|.+++ .+..++ |+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5689999999996644 566777 9999999999999988899999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.6e-14 Score=100.81 Aligned_cols=52 Identities=29% Similarity=0.728 Sum_probs=42.0
Q ss_pred CCCcCccccccccCCC---------------eeeecCCCCccccHhhHHHHH-----hcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGD---------------RLRLLPKCNHGFHVRCIDKWL-----SSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~~~~~ 122 (165)
.++.|+||++.|..+. .++.++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4679999999996643 333666 99999999999999 3467899999988753
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=1.4e-14 Score=100.57 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=43.0
Q ss_pred CCCcCccccccccCC--------------C-eeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAG--------------D-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~--------------~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.++.|+||++.|... + .++.++ |+|.||.+||..|++.+.+||+||+.+.-
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 578999999999754 1 245566 99999999999999999999999998653
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=7.6e-15 Score=93.90 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=45.2
Q ss_pred CCCCcCccccccccC----CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAA----GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~----~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+++..|+||++.|.+ ++....++ |||.||..||..|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 457899999999875 24456777 999999999999999999999999988754
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=91.47 Aligned_cols=52 Identities=23% Similarity=0.591 Sum_probs=43.9
Q ss_pred CCCCcCccccccccCC----CeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..+..|+||++.|.+. ..+..++ |||.||..||..|++.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3568999999999753 3446777 99999999999999989999999998753
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=90.91 Aligned_cols=52 Identities=23% Similarity=0.591 Sum_probs=44.4
Q ss_pred CCCcCccccccccCC----CeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
++..|+||++.+.+. ..+..++ |||.||..||.+|++.+..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 467899999999752 4456777 999999999999999899999999988764
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=94.02 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.3
Q ss_pred CCCCCcCccccccccCCCeeeecCCCC-----ccccHhhHHHHHhcC--CCCCCCCcccccc
Q 042990 68 AGLDTECVICLSEFAAGDRLRLLPKCN-----HGFHVRCIDKWLSSH--SSCPKCRHCLIET 122 (165)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 122 (165)
...++.|.||+++|++++.+ .+| |+ |.||.+||++|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34678999999999877766 577 96 999999999999654 5899999998754
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=90.89 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=43.9
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
..+..|+||++.+.+ ...++ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 356789999999876 56777 999999999999999889999999998764
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=1.1e-13 Score=87.87 Aligned_cols=50 Identities=30% Similarity=0.780 Sum_probs=43.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.+..|+||++.+.+ ....++ |||.||..|+..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 56799999999875 246777 999999999999999889999999988643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-14 Score=91.44 Aligned_cols=50 Identities=40% Similarity=0.918 Sum_probs=43.9
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 123 (165)
..+..|+||++.+.+ ..++ |+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456899999999877 5677 9999999999999999999999999887643
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=88.96 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=43.0
Q ss_pred CCCCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.++..|+||++.+.+ ...+ + |||.||..||..|++.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC---cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 356789999999987 4444 6 999999999999998899999999988764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=89.83 Aligned_cols=52 Identities=31% Similarity=0.631 Sum_probs=44.6
Q ss_pred CCCCcCccccccccCCCe-eeecCCCCccccHhhHHHHHhcC---CCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDR-LRLLPKCNHGFHVRCIDKWLSSH---SSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~ 121 (165)
.++..|+||++.|.+.+. ++.++ |||.||..||..|++.+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456799999999988664 67787 99999999999999765 789999998765
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.41 E-value=1.8e-14 Score=101.53 Aligned_cols=52 Identities=27% Similarity=0.589 Sum_probs=1.2
Q ss_pred CCCcCccccccccCC-------------C-eeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAG-------------D-RLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~-------------~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.++.|+||++.|... + ..+.+..|+|.||.+||.+|++.+.+||+||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 568999999999752 2 222322499999999999999999999999998654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=87.52 Aligned_cols=52 Identities=21% Similarity=0.528 Sum_probs=42.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC--CCCCCCCccccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH--SSCPKCRHCLIETC 123 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 123 (165)
..+..|+||++.|.+ ...++.|||.||..||..|++.+ ..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 356789999999987 45565599999999999999754 68999999766543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=88.36 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=42.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
..+..|+||++.|.+ +..++ |||.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 346789999999977 55677 9999999999999998999999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.5e-13 Score=85.64 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh---cCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS---SHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~~~~~ 122 (165)
..+..|+||++.+.+ +..++ |||.||..||..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 457899999999986 56677 999999999999996 466899999988753
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=86.46 Aligned_cols=50 Identities=26% Similarity=0.640 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC--CCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH--SSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 122 (165)
..++|+||.+.+..++... .|+|.||.+||.+||+.+ .+||+||..+.-.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4589999999998765443 499999999999999876 7899999887743
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=84.77 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=41.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~ 122 (165)
.++..|+||++.+.+ ...++ |||.||..||..|+ +.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 356789999999987 34466 99999999999999 5677899999988753
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=3.6e-13 Score=97.25 Aligned_cols=48 Identities=31% Similarity=0.814 Sum_probs=42.5
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
++..|+||++.|.+ +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34679999999976 66788 99999999999999999999999998864
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=89.71 Aligned_cols=49 Identities=31% Similarity=0.726 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCCeeee-cCCCCccccHhhHHHHHhcC-CCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRL-LPKCNHGFHVRCIDKWLSSH-SSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~-l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 122 (165)
++..|+||++.|.+ ++. ++ |||.||..||..|++.+ ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 46789999999976 556 76 99999999999999776 7999999998653
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.29 E-value=2.6e-12 Score=83.63 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=42.4
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
..+..|+||++.|.+ +..++ |||.||+.||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 357899999999987 56677 9999999999999976 7889999988764
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1.4e-12 Score=92.35 Aligned_cols=54 Identities=22% Similarity=0.544 Sum_probs=45.8
Q ss_pred CCCcCccccccccCC----CeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccccc
Q 042990 70 LDTECVICLSEFAAG----DRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 124 (165)
++..|+||++.|.+. ..+..++ |||.||..||.+|++.+.+||+||..+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 567999999999763 4457777 99999999999999999999999998876543
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=2.9e-12 Score=84.12 Aligned_cols=49 Identities=31% Similarity=0.541 Sum_probs=42.1
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc------CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS------HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~ 121 (165)
..+..|+||++.+.+ ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356799999999977 45677 9999999999999976 6789999998765
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=80.03 Aligned_cols=43 Identities=28% Similarity=0.672 Sum_probs=37.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh---cCCCCCCC
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS---SHSSCPKC 115 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 115 (165)
.++..|+||++.+.+ +..++ |||.||..||..|++ .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457899999999986 56677 999999999999997 45689998
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=84.04 Aligned_cols=49 Identities=31% Similarity=0.605 Sum_probs=42.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc------CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS------HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~ 121 (165)
..+..|+||++.+.+ ...++ |||.||..|+..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 356899999999977 45677 9999999999999976 7789999998875
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=2.3e-12 Score=81.16 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=41.2
Q ss_pred CCCcCccccc-cccCCCee-eecCCCCccccHhhHHHHHh-cCCCCCCCCcccccc
Q 042990 70 LDTECVICLS-EFAAGDRL-RLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~-~~~~~~~~-~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~ 122 (165)
++..|+||++ .+.+.... ..++ |||.||..||.+|+. ....||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3578999999 77765433 3466 999999999999975 456899999988754
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=8.2e-13 Score=86.01 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=42.1
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-------CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-------HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~~~~ 121 (165)
.++..|+||++.|.+ +..++ |||.||..||..|++. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 457899999999977 45677 9999999999999966 5689999998875
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=87.23 Aligned_cols=48 Identities=31% Similarity=0.705 Sum_probs=41.9
Q ss_pred CCCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
++..|+||++.|.+ ...+ + |||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45789999999987 4455 6 99999999999999988999999998875
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.2e-12 Score=77.80 Aligned_cols=43 Identities=28% Similarity=0.880 Sum_probs=36.3
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHH---hcCCCCCCC
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL---SSHSSCPKC 115 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~C 115 (165)
.++..|+||++.+.+ ...++ |||.||..||..|+ +.+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356899999999987 45677 99999999999995 356789998
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=3.8e-12 Score=87.99 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=42.7
Q ss_pred CCCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.+..|+||++.|.+ ...+ + |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 56899999999976 4555 7 999999999999999889999999988753
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=3.6e-12 Score=90.27 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=44.9
Q ss_pred CCCCcCccccccccC----CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAA----GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~----~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+++..|+||++.|.+ +.....++ |||.||..||.+|++.+.+||+||..+.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 456889999999875 23346676 999999999999999999999999998764
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=82.71 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=40.7
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--CCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--HSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 120 (165)
.++..|+||++.|.+ +..++.|||.||..||..|+.. +..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456899999999986 4566559999999999999954 368999999874
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=87.79 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
.+..|+||++.|.+ +..++ |||.||..||..|+.. ...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45789999999986 56677 9999999999999974 4589999998865
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=3.4e-11 Score=78.87 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=42.2
Q ss_pred CCCCcCccccccccCCCe-eeecCCCCccccHhhHHHHHh-cCCCCCCCCcccccccc
Q 042990 69 GLDTECVICLSEFAAGDR-LRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~ 124 (165)
+++..|+||++.+...+. ...++ |||.||..|+..|+. .+..||.||..+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456799999999864332 22244 999999999999984 46789999999886433
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=2.1e-11 Score=90.28 Aligned_cols=48 Identities=33% Similarity=0.663 Sum_probs=40.6
Q ss_pred CCCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
.+..|+||++.|.+ ...+ + |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC---cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34689999999987 4444 6 9999999999999976 7789999998854
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2.3e-11 Score=84.12 Aligned_cols=49 Identities=31% Similarity=0.574 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC---CCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH---SSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~~ 122 (165)
.+..|+||++.+.+ +..++ |||.||..||..|+..+ ..||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 35689999999976 45577 99999999999999764 4899999987753
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.13 E-value=2.6e-11 Score=85.08 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=42.1
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC-CCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH-SSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 122 (165)
.++..|+||++.+.+ ...++ |||.||..||..|++.+ ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 356799999999987 46677 99999999999999664 4999999988753
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=3.2e-11 Score=84.21 Aligned_cols=49 Identities=33% Similarity=0.517 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 122 (165)
++..|+||++.+.+ +..++ |||.||..||..|+.. +..||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 35789999999976 55677 9999999999999976 77899999988764
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=5.2e-11 Score=87.18 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=41.7
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC-CCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH-SSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 122 (165)
.+..|+||++.|.+ +..++ |||.||..||..|+..+ ..||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999987 56677 99999999999999765 4899999988754
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.08 E-value=5.2e-11 Score=75.02 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=40.7
Q ss_pred CCCcCccccccccCCCeeeec--CCCCcc-ccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL--PKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l--~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
++.+|.||++...+ ...+ | |||. |+..|+..|.+.+..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 46789999998766 3444 8 9999 8999999999888899999998753
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=84.95 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=41.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
++..|+||++.|.+ +..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 35789999999976 56677 9999999999999965 6789999998874
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.06 E-value=1.3e-10 Score=96.68 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh-cCCCCCCCCccccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-SHSSCPKCRHCLIETC 123 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~~ 123 (165)
....|+||++.+.+ +..++ |||.||..|+..|+. .+..||+||..+....
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 45799999999866 67788 999999999999997 6889999999988643
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.04 E-value=2.1e-10 Score=76.15 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+..|+||++-|.+ +..++ |||.|++.||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 56899999999998 77888 99999999999999888899999988764
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=7.1e-11 Score=72.34 Aligned_cols=47 Identities=26% Similarity=0.469 Sum_probs=39.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.++..|+||++.|.+ ++.++ |||.||..|+..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 456789999999987 57788 9999999999884 67899999987753
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=7.6e-11 Score=85.47 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=41.4
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC-CCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH-SSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 121 (165)
+.+..|+||++.+.+ +..++ |||.||..||..|++.+ ..||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 467899999999987 45676 99999999999999755 489999998653
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.00 E-value=1.5e-10 Score=72.68 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCCcCccccccccCCCeeeec--CCCCcc-ccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL--PKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l--~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+..|.||++...+ ...+ | |||. |+..|+..|.+.+..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 46789999998765 3344 7 9998 9999999999888899999998853
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=2.6e-10 Score=78.00 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=43.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+..|+||++-|.+ +..++ |||.|++.||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 56899999999998 77888 99999999999999888899999988764
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=3.8e-10 Score=76.91 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=43.2
Q ss_pred CCCcCccccccccCCCeeeecCCCC-ccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCN-HGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+..|+||++.|.+ +..++ || |.|++.||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 56899999999998 67787 99 999999999999888899999988764
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.9e-10 Score=80.49 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=39.4
Q ss_pred CCCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
.+..|+||++.|.+ +..+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46799999999977 5566 6 999999999999987 78999999874
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.91 E-value=3.7e-10 Score=92.27 Aligned_cols=54 Identities=24% Similarity=0.597 Sum_probs=40.6
Q ss_pred CCCCcCccccccccCCC-eeee---cCCCCccccHhhHHHHHhcC-----------CCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGD-RLRL---LPKCNHGFHVRCIDKWLSSH-----------SSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~-~~~~---l~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~~ 122 (165)
+...+|+||++.+.++. .+.. .++|+|.||..|+.+||++. ..||+||.++.-.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45679999999998733 2211 23599999999999999652 2599999987644
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=3.7e-10 Score=72.92 Aligned_cols=45 Identities=24% Similarity=0.617 Sum_probs=38.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
++..|+||++.+.+ +..++ |||. |+..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 45789999999876 67788 9999 999999998 8899999988653
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=80.99 Aligned_cols=50 Identities=32% Similarity=0.588 Sum_probs=42.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 122 (165)
.++..|+||++.+.+ +..++ |||.|+..||..|++. +..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 356899999999987 46677 9999999999999965 45999999988753
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=2.4e-09 Score=66.58 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=36.9
Q ss_pred CCCCcCccccccccCCCeeeecCCCC--c---cccHhhHHHHHh--cCCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCN--H---GFHVRCIDKWLS--SHSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~FH~~Ci~~Wl~--~~~~CP~CR~~~~ 120 (165)
+++..|.||+++..+ .. .+| |. + .||..|+.+|+. ++.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356789999998432 33 466 65 4 999999999995 3678999998764
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.3e-09 Score=71.54 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC------CCCCC--CCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH------SSCPK--CRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 118 (165)
.+..|+||++.|.+ +..++.|||.|++.||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999999987 56663499999999999999653 58999 9865
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=3.9e-09 Score=83.15 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=41.8
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
.+..|+||++.|.+ +..++ |||.|++.||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 56789999999988 77888 9999999999999965 5569999998864
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=5.3e-09 Score=70.28 Aligned_cols=51 Identities=25% Similarity=0.632 Sum_probs=41.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc--------CCCCCC--CCcc--ccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS--------HSSCPK--CRHC--LIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~--~~~ 121 (165)
....|+||++.+...+.....+ |||.|+.+|+..|+.. ...||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4578999999998776666666 9999999999999853 236999 9988 544
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=7e-09 Score=66.93 Aligned_cols=44 Identities=25% Similarity=0.634 Sum_probs=36.8
Q ss_pred CCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
++..|+||++.+.+ +..++ |||. |+..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 35689999999876 66788 9999 99999964 4789999998865
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2e-08 Score=63.85 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=38.7
Q ss_pred CCCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
.++..|.||++...+ +..+| |||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 356789999998766 77888 9999 99999884 57899999988764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=1.7e-08 Score=75.87 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=42.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc-CCCCCCCCccccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS-HSSCPKCRHCLIE 121 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 121 (165)
..+..|+||++.|.+ +..++ |||.|++.||..|+.. +.+||+|+..+..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 356789999999998 67777 9999999999999965 4579999988754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=8.5e-09 Score=67.41 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
++..|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999998776 67888 9999 999999887 3899999988764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.49 E-value=7.7e-08 Score=59.83 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCcCccccccccCCCeeeec-CCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 71 DTECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
...|+||++.|.+ +..+ + +||.|.+.||.+|++++.+||+.+..+...
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCC---CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4689999999987 5566 5 999999999999998777899999988754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.44 E-value=4.5e-08 Score=80.47 Aligned_cols=44 Identities=23% Similarity=0.675 Sum_probs=38.7
Q ss_pred CCCcCccccccccCCCeeeecCCCCcc-ccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHG-FHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
.+..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 56799999999877 67788 9999 999999988 789999998764
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.1e-07 Score=75.10 Aligned_cols=49 Identities=27% Similarity=0.568 Sum_probs=39.2
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC--CCCCC--CCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH--SSCPK--CRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~~~~ 121 (165)
.+..|+||++.|.+ .++... |||.|++.||..|+..+ ..||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 44679999999977 233345 99999999999999653 47999 9987654
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.17 E-value=1.4e-06 Score=68.15 Aligned_cols=50 Identities=26% Similarity=0.621 Sum_probs=40.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcC--CCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSH--SSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 122 (165)
....|.||.+-...+. ..+.|+|.||..|+..|++.+ ..||.|+..+.-.
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4678999999988753 333499999999999999764 4899999987654
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.04 E-value=3.5e-06 Score=56.95 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=39.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccccccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~~~ 124 (165)
-|.+|--.+.. ..|..| |+|+|+-+|+..|. ++.++||.|+..+...+.
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47777766654 578888 99999999999998 457899999998875544
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.05 E-value=0.00063 Score=45.29 Aligned_cols=45 Identities=31% Similarity=0.568 Sum_probs=37.3
Q ss_pred CCcCccccccccCCCeeeecCCCC-ccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCN-HGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
-..|--|+-..+. .+. |. |.++..|+...++....||+|+.+++-
T Consensus 28 ~~nCKsCWf~~k~---LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENKG---LVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCSS---EEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccChhhccccCC---eee---ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 4689999988654 333 55 999999999999999999999998874
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.06 E-value=0.0079 Score=39.20 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=24.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
..|+.|.||- .+..++....- .|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 4789999995 34443333233 39999999999996
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.80 E-value=0.0076 Score=37.57 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 119 (165)
..+..|.||.+. ++ +.....|...||..|++..+.. .-.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 356789999853 33 4444469999999999887743 34799996543
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.23 E-value=0.0034 Score=38.65 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=35.4
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----cCCCCCCCCc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----SHSSCPKCRH 117 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 117 (165)
+++..|++|...+.++...+..-.|...||..|+..-.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 356779999999876555555556999999999865421 3457999965
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.81 E-value=0.022 Score=37.74 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
+..|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 568999998754333333476 9999999999984
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.16 E-value=0.023 Score=42.40 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=35.9
Q ss_pred CcCccccccccCCCe---eeecCCCCccccHhhHHHH------Hh-----cCCCCCCCCcccc
Q 042990 72 TECVICLSEFAAGDR---LRLLPKCNHGFHVRCIDKW------LS-----SHSSCPKCRHCLI 120 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~---~~~l~~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~~~ 120 (165)
..|+||...|.+++. .+....|...||..|+.-- +. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999999988762 4555569999999997431 11 2678999987644
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.84 E-value=0.014 Score=37.00 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=35.5
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~~ 121 (165)
+...|.+|..... ++..+..-.|...||..|+..-.. ....||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3457999988764 333444445999999999876542 24569999776543
No 80
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=93.56 E-value=0.057 Score=33.38 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=27.1
Q ss_pred CCCCcCccccccccCCCeeeecC-CCCccccHhhHHH
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP-KCNHGFHVRCIDK 104 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~ 104 (165)
+....|.+|...+.+++..+..- .|...||..|+.-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 35678999999998776666665 6999999999753
No 81
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=93.08 E-value=0.038 Score=32.48 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=31.2
Q ss_pred cCccccccccCCCeeeecC-CCCccccHhhHHHHH----hcCCCCCCCC
Q 042990 73 ECVICLSEFAAGDRLRLLP-KCNHGFHVRCIDKWL----SSHSSCPKCR 116 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 116 (165)
.|.+|...+.+++..+..- .|...||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779999987666555554 599999999976422 2566799885
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.96 E-value=0.099 Score=33.35 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=33.3
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----cCCCCCCCCccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----SHSSCPKCRHCL 119 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~~ 119 (165)
...| ||...+.++...+....|...||..|+.---. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4556 99998864444444446999999999864221 355799998754
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.58 E-value=0.044 Score=37.23 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=32.2
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCC
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCR 116 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR 116 (165)
.+++.|.||.+.-+..+.+.- ..|+..||..|+...+. ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 467899999887433333433 45999999999988763 233566664
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.95 E-value=0.095 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=32.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRH 117 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~ 117 (165)
..+..|.+|.+. ++ +.....|...||..|+..-+. ..-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 457889999873 33 444445999999999987442 2446999965
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.59 E-value=0.053 Score=40.08 Aligned_cols=46 Identities=28% Similarity=0.571 Sum_probs=33.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHCL 119 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 119 (165)
+++.|.+|.+. ++ +.....|...||..|+..-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 56889999854 33 4455569999999998766532 44699997643
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.24 E-value=0.057 Score=40.71 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=34.0
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 119 (165)
.+++.|.+|.+. + .+.....|...||..|+..-+.. ...||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 467889999854 2 35555569999999999776532 34699997643
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=91.10 E-value=0.28 Score=35.01 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=34.2
Q ss_pred CCCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----------cCCCCCCCCcc
Q 042990 68 AGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----------SHSSCPKCRHC 118 (165)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~ 118 (165)
.+.++.|.+|.+. ++ +.....|...||..|+.+-+. ....||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3567899999875 33 344445999999999997652 24469999754
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.92 E-value=0.068 Score=32.47 Aligned_cols=48 Identities=23% Similarity=0.594 Sum_probs=32.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~ 120 (165)
.++..|.+|.+. ++ +.....|...||..|+..-+. ..-.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 356789999863 33 334445999999999885432 2346999976543
No 89
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.92 E-value=0.15 Score=34.41 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=35.0
Q ss_pred CCcCccccccccCCCeeeecC-CCCccccHhhHHHHH----------hcCCCCCCCCccc
Q 042990 71 DTECVICLSEFAAGDRLRLLP-KCNHGFHVRCIDKWL----------SSHSSCPKCRHCL 119 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~~ 119 (165)
...|.+|...|.++...+..- .|...||..|+.-=- .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 467999999997665555543 599999999985321 1455799997643
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.17 E-value=0.15 Score=29.49 Aligned_cols=44 Identities=27% Similarity=0.688 Sum_probs=29.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~ 117 (165)
.|.||...-..++.+ ....|...||..|+..=+. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888764443334 4445999999999965332 2335999864
No 91
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=89.62 E-value=0.059 Score=39.35 Aligned_cols=48 Identities=21% Similarity=0.484 Sum_probs=34.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH-----hcCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-----SSHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 118 (165)
....| +|...+.++...+....|...||..|+..-- .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9999876555455555699999999985321 235579999753
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.51 E-value=0.039 Score=36.20 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=34.1
Q ss_pred CCCCcCccccccc-cCCCeeeecCCCCccccHhhHHHHH--hcCCCCCCCCcc
Q 042990 69 GLDTECVICLSEF-AAGDRLRLLPKCNHGFHVRCIDKWL--SSHSSCPKCRHC 118 (165)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~ 118 (165)
+++..|.||.+.- .+.+.+.....|.-.||..|+..-. .....||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4678999999764 2333455555699999999987532 234468888654
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=88.51 E-value=0.67 Score=32.47 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=33.5
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHH------h-----cCCCCCCCCccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL------S-----SHSSCPKCRHCL 119 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~~~ 119 (165)
..++.|.+|.+. ..+.....|...||..||.+-+ + ..-.|++|+..-
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 467889999875 3344545699999999999752 1 234799996543
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.26 E-value=0.044 Score=33.14 Aligned_cols=48 Identities=25% Similarity=0.719 Sum_probs=33.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~~ 121 (165)
++..|.+|.+. ++.+ ....|...||..|+..=+. ..-.||.|+.....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 57889999874 3334 4445999999999885432 23469999665543
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.96 E-value=0.89 Score=30.72 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=31.1
Q ss_pred CCCcCccccccc-----cCCCeeeecCCCCccccHhhHHH------HH-hcCCCCCCCC
Q 042990 70 LDTECVICLSEF-----AAGDRLRLLPKCNHGFHVRCIDK------WL-SSHSSCPKCR 116 (165)
Q Consensus 70 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~FH~~Ci~~------Wl-~~~~~CP~CR 116 (165)
....|.+|+..- ..++.+..-..|+..||..|+.. .+ ...-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 467899998763 12334445556999999999953 22 3345677775
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.73 E-value=0.095 Score=34.28 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=35.4
Q ss_pred CCCcCccccccccC-CCeeeecCCCCccccHhhHHHHHh--------cCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAA-GDRLRLLPKCNHGFHVRCIDKWLS--------SHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~~~ 120 (165)
.+..|.+|...-.. +..+...-.|...||..|+..=+. ....|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35789999987442 234555556999999999886442 2446999976554
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=87.67 E-value=0.35 Score=29.41 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=33.6
Q ss_pred CCCCcCcccccccc-CCCeeeecCCCCccccHhhHHHHH-------hcCCCCCCCCc
Q 042990 69 GLDTECVICLSEFA-AGDRLRLLPKCNHGFHVRCIDKWL-------SSHSSCPKCRH 117 (165)
Q Consensus 69 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~FH~~Ci~~Wl-------~~~~~CP~CR~ 117 (165)
.++..|.||..... ++..+.....|...||..|+..=+ .....|+.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 46789999998753 233444555699999999987532 23446888854
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.50 E-value=0.18 Score=31.81 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=31.6
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHH---------hcCCCCCCCCcc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL---------SSHSSCPKCRHC 118 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~ 118 (165)
...| ||...+..+..+.-- .|...||..|+..-. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3567 899887644444444 599999999985321 246789999653
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.72 E-value=0.1 Score=32.14 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=31.8
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCcc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRHC 118 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~ 118 (165)
.+++.|.||.+. ++ +.....|...||..|+..-+. ..-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 467899999874 33 344445999999999885432 24469999643
No 100
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=86.37 E-value=0.14 Score=31.85 Aligned_cols=46 Identities=24% Similarity=0.519 Sum_probs=30.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH---hcCCCCCCCCc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL---SSHSSCPKCRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 117 (165)
+...| ||...+..+..+ ....|...||..|+.--- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MI-qCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEE-ECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEE-ECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44668 998877633344 444599999999986422 12446888854
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.71 E-value=0.079 Score=31.54 Aligned_cols=44 Identities=30% Similarity=0.797 Sum_probs=29.6
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCC
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCR 116 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR 116 (165)
.++..|.+|.+. ++ +.....|...||..|+..=+. ..-.||.|+
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 457889999875 33 334445999999999875332 233577774
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.47 E-value=0.55 Score=30.70 Aligned_cols=46 Identities=30% Similarity=0.603 Sum_probs=32.6
Q ss_pred CCCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCcc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHC 118 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 118 (165)
.+++.|.+|.+. ++ +.....|.-.||..|+..=+.. ...||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 467899999875 33 3444459999999999764422 3469999754
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.29 E-value=0.31 Score=32.38 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=30.5
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHh---cCCCCCCCCc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS---SHSSCPKCRH 117 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 117 (165)
..| ||......+..+.- ..|...||..|+..=.. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 89877666555544 45999999999865321 2347999974
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.60 E-value=0.29 Score=33.23 Aligned_cols=45 Identities=29% Similarity=0.658 Sum_probs=30.5
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 117 (165)
.|.+|.+.-.+++.+.....|...||..|+..-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888753333445555569999999998754422 346999864
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.49 E-value=2.3 Score=27.77 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=37.9
Q ss_pred CCCcCcccccccc---CCCeeeecCCCCccccHhhHHHHH-hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFA---AGDRLRLLPKCNHGFHVRCIDKWL-SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~ 120 (165)
....|.||-+++. +++.-.....|+--.++.|..-=. ..+..||.|++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999999964 344444444588889999988766 45778999998886
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.84 E-value=2.3 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS 108 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 108 (165)
....|.+|.+.+++..-+..-..=+|.|+..|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 457899999999986655332234599999999998854
No 107
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.70 E-value=0.63 Score=30.61 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=28.7
Q ss_pred CCCcCccccccccCCCeeeecCC--CC-ccccHhhHHHHH--hcCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPK--CN-HGFHVRCIDKWL--SSHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~ 118 (165)
+..-| ||..... ++ .+..-. |. ..||..|+..=- ..+..||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 44567 9988753 33 333334 55 689999987211 124579999754
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=83.25 E-value=0.85 Score=28.44 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=28.7
Q ss_pred CCCcCccccccccCCCeeeecCC--CC-ccccHhhHHHHH--hcCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPK--CN-HGFHVRCIDKWL--SSHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~ 118 (165)
+..-| ||..... ++ .+..-. |. ..||..|+..=- ..+..||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 44668 8988643 33 334444 55 699999997211 124469999654
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=83.20 E-value=0.96 Score=30.68 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=29.1
Q ss_pred CcCcccccccc------CCCeeeecCCCCccccHhhHHHH------H-hcCCCCCCCC
Q 042990 72 TECVICLSEFA------AGDRLRLLPKCNHGFHVRCIDKW------L-SSHSSCPKCR 116 (165)
Q Consensus 72 ~~C~ICl~~~~------~~~~~~~l~~C~H~FH~~Ci~~W------l-~~~~~CP~CR 116 (165)
+.|.+|+..-. +++.......|+..||..|+..+ + ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 57999987642 12344444469999999998754 2 2344677664
No 110
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=82.95 E-value=2.6 Score=23.78 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 042990 4 SVLLCALICSLGLNSIIRCVVRC 26 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i~~~~~r~ 26 (165)
+++..++++++.+..++++++|+
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehhHHHHHHHHHHHHHHHHhhhh
Confidence 34443444444444444444443
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.63 E-value=1.5 Score=27.29 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=33.1
Q ss_pred CCCCcCccccccc-cCCCeeeecCCCCccccHhhHHHHH--hcCCCCCCCCc
Q 042990 69 GLDTECVICLSEF-AAGDRLRLLPKCNHGFHVRCIDKWL--SSHSSCPKCRH 117 (165)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~ 117 (165)
.++..|.||.+.- .+++.......|.-.||..|+..-. ...-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4678999998764 2334455555699999999987432 22445887754
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.32 E-value=0.35 Score=35.94 Aligned_cols=44 Identities=30% Similarity=0.625 Sum_probs=30.7
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCcc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRHC 118 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~ 118 (165)
++.|.+|.+. ++.+ ....|...||..|+..=+. ....||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999865 3333 3445999999999865332 23469999765
No 113
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=79.93 E-value=1.6 Score=40.22 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCCeeeecCCCC-ccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCN-HGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
++..|+|-++-|.+ +..++ -| +.|-+.+|.+|+..+.+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45679999999998 77887 76 689999999999888999999888764
No 114
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=79.43 E-value=1.6 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCID 103 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~ 103 (165)
+..|.+|...|..-..---...||++|+..|-.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 468999999997643222333599999999854
No 115
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=78.42 E-value=0.31 Score=28.42 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=26.2
Q ss_pred cccccccCCCeeeecCCCCccccHhhHHHHH---hcCCCCCCCCc
Q 042990 76 ICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL---SSHSSCPKCRH 117 (165)
Q Consensus 76 ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 117 (165)
||......+..+. ...|+..||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6777655334444 44599999999986422 23456888864
No 116
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.27 E-value=0.73 Score=29.22 Aligned_cols=46 Identities=26% Similarity=0.689 Sum_probs=29.9
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHh----c-CCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----S-HSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~ 117 (165)
+..|.||...-..++.+ ..-.|...||..|+..=+. . .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788998653333344 4445999999999884332 2 346888864
No 117
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=77.83 E-value=5.2 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r 25 (165)
+++++..++++.+.++.++.|-+-
T Consensus 16 i~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcc
Confidence 445555555555555666655443
No 118
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.72 E-value=1.7 Score=27.60 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=25.1
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
+...|.+|...|.....---...||++|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34689999999976432233345999999999654
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.23 E-value=1.6 Score=29.45 Aligned_cols=46 Identities=22% Similarity=0.513 Sum_probs=30.0
Q ss_pred CCCCcCccccccccCCCeeeecC--CCCccccHhhHHHHHhc----CCCCCCCCcccc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP--KCNHGFHVRCIDKWLSS----HSSCPKCRHCLI 120 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 120 (165)
.+++.|.+|.+. + .+.... .|...||..|+. +.. .-.||.|+-.+-
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 467889999842 3 344443 488999999987 432 335887654443
No 120
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.68 E-value=4.1 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 042990 10 LICSLGLNSIIRCVVR 25 (165)
Q Consensus 10 ll~~~~l~~i~~~~~r 25 (165)
+++++....++++++|
T Consensus 21 ~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 21 FILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333333333444444
No 121
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=76.14 E-value=0.47 Score=30.20 Aligned_cols=44 Identities=34% Similarity=0.794 Sum_probs=27.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhc----C-CCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----H-SSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 117 (165)
.|.+|...-.. +.+...-.|...||..|+..-+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45566554332 334444469999999998865422 2 46998875
No 122
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=75.57 E-value=5 Score=23.64 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 042990 2 VLSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~~r 25 (165)
+++++..++++++.++.++.|-+-
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcc
Confidence 445555555555555566655543
No 123
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.49 E-value=1.4 Score=27.31 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=31.7
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHH----hcCCCCCCCCc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL----SSHSSCPKCRH 117 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~ 117 (165)
...| ||...+.+++..+..-.|...||..|+..-- .....||.|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3468 7998876665444555699999999976531 23456998864
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.38 E-value=2.8 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
+...|.+|...|..-..---...||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 346899999999764332333459999999996553
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.02 E-value=1.8 Score=32.55 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
++..|.+|...|..-..---...||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35799999999975432233345999999988544
No 126
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.43 E-value=3.1 Score=26.90 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=33.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH-------hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-------SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-------~~~~~CP~CR~~~~ 120 (165)
+...|.+|...|..-..---...||++|+..|....+ +..+.|-.|...+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4568999999998643223334599999999976542 11234666654444
No 127
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=73.32 E-value=6.1 Score=22.26 Aligned_cols=7 Identities=14% Similarity=-0.211 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 042990 20 IRCVVRC 26 (165)
Q Consensus 20 ~~~~~r~ 26 (165)
..+++|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444443
No 128
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=73.18 E-value=1.2 Score=22.99 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=20.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhH
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCI 102 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 102 (165)
+.|+.|-...-..+.+.. -|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 579999888766544432 5789999884
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.85 E-value=2.1 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=25.7
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 105 (165)
++..|.+|...|..-..--....||++|+..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999864332334459999999996543
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.85 E-value=2.5 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDK 104 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 104 (165)
...|.+|...|.....---...||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3589999999976432223335999999998543
No 131
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.11 E-value=0.42 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=29.6
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCC
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCR 116 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 116 (165)
...|..|...|..-..---...||.+|+..|........+.|-.|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4689999999975322223335999999999766554456677773
No 132
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=72.02 E-value=0.93 Score=28.13 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=27.6
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHh----c-CCCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----S-HSSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~ 117 (165)
.|.+|...-..+ .+...-.|...||..|+..=+. . .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456777543333 3444445999999999884332 2 346888864
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=71.47 E-value=0.87 Score=27.29 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=27.5
Q ss_pred CCCcCccccccccCCCeeeecCC--CC-ccccHhhHHHHH--hcCCCCCCCCc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPK--CN-HGFHVRCIDKWL--SSHSSCPKCRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 117 (165)
+..-| +|.+... + ..+..-. |. ..||..|+.-=- ..+..||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44567 8988642 3 3444445 65 699999987211 12446888854
No 134
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.43 E-value=4 Score=25.60 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=31.4
Q ss_pred CCCcCccccccccCCCeeeecC-CCCccccHhhHHHHHh---------cCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLP-KCNHGFHVRCIDKWLS---------SHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~ 118 (165)
....| ||......+..+.--. .|...||..|+.---. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34568 7988855554444330 4999999999864211 35579999653
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.41 E-value=2.7 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=26.1
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
...|.+|...|..-..--....||++|+..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999997543333344599999999977653
No 136
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.24 E-value=1.6 Score=28.57 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=32.6
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHH----hcCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL----SSHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 118 (165)
++..|.||...-..+. +...-.|...||..|+..=+ ...-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~-ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDK-LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGG-CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCC-EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 5678999998754333 34444599999999987433 224469999654
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=70.50 E-value=1.3 Score=33.99 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=26.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHh----c-CCCCCCCCc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----S-HSSCPKCRH 117 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~ 117 (165)
..|.+|...=..+. ....-.|...||..|+..=+. . .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~-lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--C-CEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCC-eEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35888876433333 334445999999999985332 2 346999964
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.39 E-value=3.7 Score=26.08 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=23.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCID 103 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~ 103 (165)
+...|.+|...|..-..---...||.+|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3468999999997533222233599999998843
No 139
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.32 E-value=7.6 Score=23.49 Aligned_cols=43 Identities=21% Similarity=0.486 Sum_probs=29.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
....|+-|.+.+...+.+... -+..||.+| ..|-.|...+...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 457899999998765544322 577899877 3477887776643
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.09 E-value=0.9 Score=27.26 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=26.9
Q ss_pred CCCcCccccccccCCCeeeecCC--CC-ccccHhhHHHHHh----cCCCCCCCCc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPK--CN-HGFHVRCIDKWLS----SHSSCPKCRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~ 117 (165)
+..-| ||..... + ..+..-. |. ..||..|+. +. .+..||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 8988643 3 3444444 54 689999987 32 2446888853
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.78 E-value=5.8 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.514 Sum_probs=30.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
....|+.|.+.+.+++.+.. -+..||.+| ..|-.|+..+..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 34689999999987766543 578899877 347888777764
No 142
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=63.93 E-value=4.2 Score=25.26 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=31.7
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----cCCCCCCCCccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----SHSSCPKCRHCL 119 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~~ 119 (165)
..| ||...+..+...+..-.|.-.||..|+.---. ....||.|+...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 344 89888765444445556999999999864321 346799997643
No 143
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=63.78 E-value=5.8 Score=23.50 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=31.4
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
....|+-|...+..++.+... -+..||..|+ .|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 356899999999876655332 5778998884 578888777654
No 144
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=62.01 E-value=16 Score=22.63 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSII 20 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~ 20 (165)
.+.+++++++++++.++.
T Consensus 19 GGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 19 GGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 355666666666666665
No 145
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=61.98 E-value=0.75 Score=27.89 Aligned_cols=45 Identities=29% Similarity=0.583 Sum_probs=27.4
Q ss_pred CCCcCccccccccCCCeeeecCC--CC-ccccHhhHHHHH--hcCCCCCCCCc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPK--CN-HGFHVRCIDKWL--SSHSSCPKCRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 117 (165)
+..-| +|.... .++ .+..-. |. ..||..|+..=- ..+..||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34567 898863 343 444445 44 899999987311 12446888854
No 146
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=61.76 E-value=3.1 Score=27.71 Aligned_cols=13 Identities=31% Similarity=1.035 Sum_probs=11.1
Q ss_pred cccHhhHHHHHhc
Q 042990 96 GFHVRCIDKWLSS 108 (165)
Q Consensus 96 ~FH~~Ci~~Wl~~ 108 (165)
.||+.|+..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999954
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.43 E-value=8.9 Score=23.79 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=30.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
....|+.|.+.+...+.+.. -+..||.+| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 35689999999876665543 578899888 3477787776654
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.26 E-value=1.1 Score=30.02 Aligned_cols=44 Identities=20% Similarity=0.597 Sum_probs=28.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHh----cCCCCCCCCc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS----SHSSCPKCRH 117 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~ 117 (165)
.|.+|...-.+. .+.....|...||..|+..=+. ....||.|+.
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 577887664433 3444446999999999875332 2345887744
No 149
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=61.25 E-value=3.2 Score=27.59 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=10.7
Q ss_pred cccHhhHHHHHh
Q 042990 96 GFHVRCIDKWLS 107 (165)
Q Consensus 96 ~FH~~Ci~~Wl~ 107 (165)
.||+.|+..|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 150
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.32 E-value=9.5 Score=23.61 Aligned_cols=40 Identities=28% Similarity=0.581 Sum_probs=29.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
....|+-|.+.+.+++.+.. -+..||.+| ..|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 35689999999887665544 567899877 44777877664
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.31 E-value=8.2 Score=22.98 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=28.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+-|.+.+.+++.+.. .-+..||.+|+ .|-.|...+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 4689999999886543332 25788998773 47778776654
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.25 E-value=8.5 Score=22.90 Aligned_cols=41 Identities=20% Similarity=0.471 Sum_probs=28.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+.+.+..... -+..||.+| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 35799999998875443332 567888877 347778776654
No 153
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=58.21 E-value=6.5 Score=23.89 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=4.9
Q ss_pred cCccccccccC
Q 042990 73 ECVICLSEFAA 83 (165)
Q Consensus 73 ~C~ICl~~~~~ 83 (165)
.|..|...+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 44444444443
No 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.09 E-value=7 Score=27.27 Aligned_cols=35 Identities=14% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCCCcCccccccccC-CCeeeecCCCCccccHhhHH
Q 042990 69 GLDTECVICLSEFAA-GDRLRLLPKCNHGFHVRCID 103 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~ 103 (165)
.++..|.+|...|.. ...-+....|.|.++..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 356899999999952 22233444599999988844
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=57.23 E-value=10 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.649 Sum_probs=26.5
Q ss_pred CCCCcCccccccccCCCeeeecC--CCCccccHhhHHHHHh
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP--KCNHGFHVRCIDKWLS 107 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~ 107 (165)
+.+..|.||-+. ..+.... .|...|+..||+.++.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 456789999864 3455544 5999999999999973
No 156
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.09 E-value=5.6 Score=23.85 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=29.9
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCC
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKC 115 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 115 (165)
..|-.|+..+.+.. ....+.|++.|+.+|=.---..=.+||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 34566799999999933322445579988
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.62 E-value=12 Score=22.84 Aligned_cols=41 Identities=22% Similarity=0.548 Sum_probs=29.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+..++..... -+..||.+| ..|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 46899999998876554332 577899877 357788777654
No 158
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.47 E-value=2.5 Score=28.46 Aligned_cols=28 Identities=36% Similarity=0.732 Sum_probs=18.5
Q ss_pred CCCccccHhhHHHHHhcCCCCCCCCcccccccc
Q 042990 92 KCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQ 124 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 124 (165)
.||+.|. +. +.....||.|+..-++.+.
T Consensus 72 ~CG~~F~----~~-~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 72 KCGFVFK----AE-INIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TTCCBCC----CC-SSCCSSCSSSCCCCBCCCC
T ss_pred hCcCeec----cc-CCCCCCCcCCCCCccCCcc
Confidence 4999981 11 2344579999998776543
No 159
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=56.19 E-value=1.9 Score=36.28 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=31.8
Q ss_pred CccccccccCCCeeeecCCCCccccHhhHHHHH-----hcCCCCCCCCcccc
Q 042990 74 CVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL-----SSHSSCPKCRHCLI 120 (165)
Q Consensus 74 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~~~ 120 (165)
.-+|...+.++...+..-.|...||..|+.--- .....||.|+....
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 348988876444444555699999999985321 13568999976544
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.55 E-value=9.6 Score=23.39 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=25.6
Q ss_pred CCCCcCccccccccCCCeeeecCCC-CccccHhhHHHH
Q 042990 69 GLDTECVICLSEFAAGDRLRLLPKC-NHGFHVRCIDKW 105 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~FH~~Ci~~W 105 (165)
++..-|.||.++ ..++-+. | +-+|+..|+.+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 455789999887 3477887 9 789999998875
No 161
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.46 E-value=12 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 042990 2 VLSVLLCALICSLGLNSIIRCV 23 (165)
Q Consensus 2 Il~ill~~ll~~~~l~~i~~~~ 23 (165)
+++++..++++.+..+.++.|-
T Consensus 14 i~s~l~GLllL~li~~~LwK~G 35 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMWKVG 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444554455555443
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.35 E-value=12 Score=22.30 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+.|.+.+...+.... . -+..||.+| ..|-.|...+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 4678888888775433322 1 567888777 34777777764
No 163
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.80 E-value=2.9 Score=34.26 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWL 106 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 106 (165)
...|.+|...|.....-.....||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 468999999987532222333599999999987764
No 164
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.53 E-value=16 Score=22.89 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
....|+-|.+.+.. +. +. .-+..||.+| ..|-.|...+..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VK-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EE-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EE-ECCceECccC--------CEecCCCCCCCC
Confidence 34689999998875 22 22 2678999887 347788777654
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.86 E-value=17 Score=21.62 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=27.8
Q ss_pred CCcCccccccccC--CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAA--GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+-|.+.+.. ++.... . -+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCC
Confidence 4679999999875 333322 2 6788998773 5778877765
No 166
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=51.25 E-value=16 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042990 3 LSVLLCALICSLGLNSIIRCVVR 25 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~~~~~r 25 (165)
+.+++.+.++++.+..-+.+++.
T Consensus 10 lt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcc
Confidence 34444444455555555555544
No 167
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=51.08 E-value=11 Score=23.09 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.5
Q ss_pred CCccccH
Q 042990 93 CNHGFHV 99 (165)
Q Consensus 93 C~H~FH~ 99 (165)
|.|-|-+
T Consensus 59 C~hr~qk 65 (70)
T 2klu_A 59 SPHRFQK 65 (70)
T ss_dssp CCCCCCC
T ss_pred CcHHHhh
Confidence 5555443
No 168
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.96 E-value=16 Score=22.93 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=27.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+-|.+.+.+.+.+. . -+..||.+|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCC
Confidence 468999999887766543 2 6778888773 35566555543
No 169
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.89 E-value=16 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 4 SVLLCALICSLGLNSIIR 21 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i~~ 21 (165)
+++.+++++.+++.++++
T Consensus 16 gvi~gilliGllllliwk 33 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 170
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.51 E-value=15 Score=22.13 Aligned_cols=40 Identities=25% Similarity=0.673 Sum_probs=27.0
Q ss_pred CCcCccccccccC--CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAA--GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+.|.+.+.. ...... . -+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-F-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE-E-CCcccCcccC--------ChhhCCCcCC
Confidence 4679999999875 333322 2 6788998883 4777776664
No 171
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=49.27 E-value=13 Score=30.70 Aligned_cols=46 Identities=24% Similarity=0.612 Sum_probs=31.9
Q ss_pred CCCCcCccccccccCCCeeeecC--CCCccccHhhHHHHHhc----------CCCCCCCCcc
Q 042990 69 GLDTECVICLSEFAAGDRLRLLP--KCNHGFHVRCIDKWLSS----------HSSCPKCRHC 118 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~ 118 (165)
+.+..|.+|-+. ..+.... .|...||..||.+++.. +-.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456778888764 2344444 59999999999999822 3368778543
No 172
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=48.87 E-value=7.6 Score=23.54 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=28.5
Q ss_pred CcCccccccccCCCeeeec-CCCCccccHhhHHHHH--------hcCCCCCCCCc
Q 042990 72 TECVICLSEFAAGDRLRLL-PKCNHGFHVRCIDKWL--------SSHSSCPKCRH 117 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl--------~~~~~CP~CR~ 117 (165)
..| ||......+..+.-- ..|...||..|+.--- -.+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 797776666554432 1489999999974210 01456999964
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.20 E-value=21 Score=29.20 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=29.5
Q ss_pred CcCccccccccCCCeeeecCCCCcc--ccHhhHHHHHh--cCCCCCCCCccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHG--FHVRCIDKWLS--SHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~~~~ 121 (165)
..|++=...|.. .++... |.|. |=..-+..... ....||+|...+..
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 468887777655 355565 9998 44444444332 24469999887643
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=47.69 E-value=13 Score=24.94 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=5.6
Q ss_pred cCccccccccC
Q 042990 73 ECVICLSEFAA 83 (165)
Q Consensus 73 ~C~ICl~~~~~ 83 (165)
.|+.|...+..
T Consensus 10 ~C~~C~~~I~~ 20 (123)
T 2l3k_A 10 LCASCDKRIRA 20 (123)
T ss_dssp CCSSSSCCCCT
T ss_pred cccCCCCeecC
Confidence 45555555543
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.26 E-value=19 Score=22.06 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.9
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 122 (165)
....|+-|.+.+. ++.+ . .-+..||.+| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCCC
Confidence 3468999999887 3332 2 2677889877 4577887776643
No 176
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.26 E-value=11 Score=26.97 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=23.4
Q ss_pred CCCcCccccccccC--CCeeeecCCCCccccHhhH
Q 042990 70 LDTECVICLSEFAA--GDRLRLLPKCNHGFHVRCI 102 (165)
Q Consensus 70 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci 102 (165)
++..|++|...|.. +...... .|+|.++..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc
Confidence 56899999998753 2333334 49999999886
No 177
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.87 E-value=21 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=29.3
Q ss_pred CcCccccccccCCCeeeecCCCCcc--ccHhhHHHHHhc--CCCCCCCCcccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHG--FHVRCIDKWLSS--HSSCPKCRHCLI 120 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~~~ 120 (165)
..|++=...++. .+|... |.|. |=..-+.....+ ...||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 358877777655 355555 9998 554444444322 446999988765
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=45.27 E-value=16 Score=24.70 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=29.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+-|...+.....+.. -+..||.+| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3689999999876433333 678899888 45888988876
No 179
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=44.41 E-value=13 Score=31.59 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=32.2
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHh-----cCCCCCCCCccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLS-----SHSSCPKCRHCL 119 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~~ 119 (165)
..| +|...+.++...+..-.|...||..|+.---. ....||.|+...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 456 99988864444445556999999999854321 245799997543
No 180
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=43.88 E-value=10 Score=20.25 Aligned_cols=6 Identities=17% Similarity=-0.125 Sum_probs=2.5
Q ss_pred HHHHhh
Q 042990 20 IRCVVR 25 (165)
Q Consensus 20 ~~~~~r 25 (165)
..+++|
T Consensus 28 ~~~iRR 33 (35)
T 1iij_A 28 GILIKR 33 (35)
T ss_dssp THHHHH
T ss_pred heEEee
Confidence 344444
No 181
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.79 E-value=11 Score=25.15 Aligned_cols=46 Identities=24% Similarity=0.657 Sum_probs=29.7
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhHHHHHhc----CCCCCCCCccc
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSS----HSSCPKCRHCL 119 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 119 (165)
.|.||...-..++.+ ....|...||..|+..=+.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLL-FCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEE-ECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceE-EcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887764444444 44459999999998853322 33588885543
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.37 E-value=29 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
....|+-|.+.+.. +. +. .-+..||.+|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VK-LRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EE-CSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC-cE--EE-ECcceeCcCcC--------eeCCCCCCCCC
Confidence 34689999998875 22 22 26789998884 47888777653
No 183
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=39.84 E-value=45 Score=21.98 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=18.3
Q ss_pred CCCccccHhhHH------HHHhc-----CCCCCCCCccc
Q 042990 92 KCNHGFHVRCID------KWLSS-----HSSCPKCRHCL 119 (165)
Q Consensus 92 ~C~H~FH~~Ci~------~Wl~~-----~~~CP~CR~~~ 119 (165)
.|++.||..|+. +-+.. ...||.|....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 499999999952 11222 36799996543
No 184
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.65 E-value=34 Score=18.87 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 042990 4 SVLLCALICSLGLNSIIRCVV 24 (165)
Q Consensus 4 ~ill~~ll~~~~l~~i~~~~~ 24 (165)
+++.+++++-+.+..+++.+.
T Consensus 15 gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445554443
No 185
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=39.17 E-value=10 Score=23.30 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=27.7
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+.+++.+.. -+..||.+|+ .|-.|+..+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 4689999999877665433 5678888773 36777766654
No 186
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=39.11 E-value=36 Score=18.50 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042990 3 LSVLLCALICSLGLNSIIRCVV 24 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~~~~~ 24 (165)
+.+++++...+++..++..+..
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444433
No 187
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=38.99 E-value=23 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSII 20 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~ 20 (165)
.+.+++++++++++.++.
T Consensus 20 gGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 355666666777766665
No 188
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.78 E-value=37 Score=19.87 Aligned_cols=39 Identities=21% Similarity=0.581 Sum_probs=25.5
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+-|.+.+.. +.+.. -+..||.+|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCC
Confidence 4678888888763 22222 5678888773 47777766654
No 189
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.39 E-value=27 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=27.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|...+..++.+.. .-+..||.+| ..|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 3579999999884333322 2568889877 347778776653
No 190
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.28 E-value=20 Score=20.78 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=26.9
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+. ++. +.. -+..||.+| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCC
Confidence 467999999887 333 222 677899877 347788777653
No 191
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.97 E-value=33 Score=20.78 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=27.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+.. +.+. .-+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCCC
Confidence 3589999998873 3332 26788998773 47788777653
No 192
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.71 E-value=28 Score=20.79 Aligned_cols=41 Identities=22% Similarity=0.493 Sum_probs=28.1
Q ss_pred CCcCccccccccC---CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAA---GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+-|.+.+.. ...... . -+..||.+| ..|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 3679999999885 223322 2 578899877 458888877753
No 193
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.99 E-value=11 Score=24.89 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=23.8
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
-.|+.|..+++..........|+.- +.....||-|..++-.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHH
Confidence 5899999887542222222224432 2345569999877653
No 194
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.95 E-value=7.8 Score=19.61 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.3
Q ss_pred CCCCCCCCcccc
Q 042990 109 HSSCPKCRHCLI 120 (165)
Q Consensus 109 ~~~CP~CR~~~~ 120 (165)
+..||+|+...+
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 346888887655
No 195
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=35.44 E-value=18 Score=22.59 Aligned_cols=18 Identities=17% Similarity=0.737 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042990 3 LSVLLCALICSLGLNSII 20 (165)
Q Consensus 3 l~ill~~ll~~~~l~~i~ 20 (165)
.+.+++++++++++.++.
T Consensus 22 gGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 22 VGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 455666677777776665
No 196
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.79 E-value=5.5 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=13.2
Q ss_pred CCCccccHhhHHHHHh
Q 042990 92 KCNHGFHVRCIDKWLS 107 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~ 107 (165)
.|++.|+..|-..|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999888733
No 197
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.71 E-value=36 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=18.1
Q ss_pred CcCccccccccC-CCeeeecCCCCccccHhhHHHHHh
Q 042990 72 TECVICLSEFAA-GDRLRLLPKCNHGFHVRCIDKWLS 107 (165)
Q Consensus 72 ~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~ 107 (165)
..|..|...+.. +..- .. .=+..|+..|..+-+.
T Consensus 31 F~C~~C~~~L~~~g~~~-~~-~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRL-YY-KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCC-CC-BTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCee-EE-ECCeeechHHHHHHhC
Confidence 467777766653 2111 12 1456677777666443
No 198
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.64 E-value=36 Score=20.29 Aligned_cols=38 Identities=18% Similarity=0.499 Sum_probs=24.8
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+-|...+.. +. +. .-+..||.+| ..|-.|...+.
T Consensus 5 ~~~C~~C~~~I~~-~~--v~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RV--LE-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CC--BC-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-ee--EE-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 3578888888765 22 22 3677888877 34667766665
No 199
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.42 E-value=24 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.0
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
....|+-|.+.+. ++.+. . -+..||.+| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3578999999985 33332 2 678999877 357788777664
No 200
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.38 E-value=11 Score=19.89 Aligned_cols=14 Identities=14% Similarity=0.517 Sum_probs=10.6
Q ss_pred CCcCccccccccCC
Q 042990 71 DTECVICLSEFAAG 84 (165)
Q Consensus 71 ~~~C~ICl~~~~~~ 84 (165)
...|++|+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46799999887653
No 201
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.87 E-value=30 Score=20.22 Aligned_cols=38 Identities=24% Similarity=0.562 Sum_probs=26.0
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+.|.+.+.. +.+ .. -+..||.+| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 4579999988874 332 22 678889877 34778877764
No 202
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.60 E-value=21 Score=22.68 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=8.0
Q ss_pred CcCccccccccCC
Q 042990 72 TECVICLSEFAAG 84 (165)
Q Consensus 72 ~~C~ICl~~~~~~ 84 (165)
..|+.|..++..+
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 3577777766543
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.58 E-value=27 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHhhH
Q 042990 73 ECVICLSEFAAGDRLRLLPKCNHGFHVRCI 102 (165)
Q Consensus 73 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 102 (165)
.|..|...+...+.+.. .-++.||.+|+
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGGC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCCC
Confidence 69999988876554433 25788998883
No 204
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=33.02 E-value=13 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=17.0
Q ss_pred CCCccccHhhHHHHHhcCCCCCCCCccccccc
Q 042990 92 KCNHGFHVRCIDKWLSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 92 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 123 (165)
.|||.|-.. .....||.|-..+...+
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEEECC
T ss_pred CCCCcccCC------CCCCcCCCCCCcceeCC
Confidence 588888643 22347999988764443
No 205
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.55 E-value=23 Score=22.92 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=27.8
Q ss_pred CCCcCccccccccCCCeeeecCCCC---ccccHhhHHHHH--hcCCCCCC-CCc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCN---HGFHVRCIDKWL--SSHSSCPK-CRH 117 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 117 (165)
+..-| ||..... ++ .+..-.|. ..||..|+..=- .....||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44567 9987533 34 33444455 789999986211 13457999 863
No 206
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=32.52 E-value=56 Score=16.95 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042990 5 VLLCALICSLGLNSIIRCV 23 (165)
Q Consensus 5 ill~~ll~~~~l~~i~~~~ 23 (165)
+++.-++..+++...++++
T Consensus 12 IVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHhhe
Confidence 3344444444444444444
No 207
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.44 E-value=11 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=14.2
Q ss_pred HHHHhcCCCCCCCCcccccc
Q 042990 103 DKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 103 ~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+.|+..--.||.|+.++.-.
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 44566677899999987743
No 208
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.28 E-value=38 Score=19.70 Aligned_cols=38 Identities=21% Similarity=0.609 Sum_probs=25.4
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+-|.+.+.. +.+.. -+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 4678888888864 33322 5678888773 4777877765
No 209
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=31.10 E-value=54 Score=19.59 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCCcCccccccccCCCeeeecCCCCccccH-hhHHHH
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCNHGFHV-RCIDKW 105 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~-~Ci~~W 105 (165)
....|+-|...+..+.....-...-|.|+. .||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 467899999999998877666658899996 688875
No 210
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.99 E-value=46 Score=20.20 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCCcCccccccccCCCeeeecCCCC---ccccHhhHHHHH--hcCCCCCCCCcccc
Q 042990 70 LDTECVICLSEFAAGDRLRLLPKCN---HGFHVRCIDKWL--SSHSSCPKCRHCLI 120 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~~~ 120 (165)
+..-| +|.... .++.+ ..-.|. ..||..|+..-- .....||.|+....
T Consensus 5 ~~~yC-~C~~~~-~g~MI-~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGEMV-GCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCCS-TTSCCC-CSSEE-CCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCeEE-EcCCCC-CCCEe-EeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 34556 587763 34443 333353 799999987321 22446999976543
No 211
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.63 E-value=16 Score=21.37 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=9.5
Q ss_pred CCcCccccccccC
Q 042990 71 DTECVICLSEFAA 83 (165)
Q Consensus 71 ~~~C~ICl~~~~~ 83 (165)
--.|++|..++..
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 3579999987653
No 212
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.26 E-value=25 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=24.8
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..|..|...+.... ... =|..|+..|..+ +....|..|...+..
T Consensus 88 F~C~~C~~~L~~~~---f~~-~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERC---FSR-GESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCC---EEE-TTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCc---eeE-CCEeeecCcccc--ccccccccCCCccCC
Confidence 56777777766532 122 456666666544 224457777666654
No 213
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.60 E-value=60 Score=21.42 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=33.8
Q ss_pred CcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETC 123 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 123 (165)
..|..|...+.+....-... =+..|+..|..+-+..+..|-.|...|....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEE-CCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 46888888875311111222 5778888888886655557999988888643
No 214
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=29.12 E-value=37 Score=19.66 Aligned_cols=39 Identities=26% Similarity=0.554 Sum_probs=26.6
Q ss_pred CcCccccccccCCCeeeecCCCCcccc--HhhHHHHHhcCCCCCCCCcccc
Q 042990 72 TECVICLSEFAAGDRLRLLPKCNHGFH--VRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 72 ~~C~ICl~~~~~~~~~~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
..|+-|.+.+..++.... .-+..|| .+| ..|-.|+..+.
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCC--------EECCCCCCcCC
Confidence 468899998886433322 1578899 877 35778877765
No 215
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.79 E-value=26 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=20.4
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhH
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCI 102 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 102 (165)
...|..|...+.+++.++.. =+..||.+|+
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 46788888888766544332 5678887763
No 216
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.84 E-value=47 Score=19.88 Aligned_cols=38 Identities=21% Similarity=0.600 Sum_probs=26.2
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+.|.+.+... . +.. -+..||.+|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~-~--v~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG-G--VTY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC-C--EES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc-E--EEE-CCchhhhhhC--------CcccCCCcCC
Confidence 35799999888653 2 222 6788898773 4778877764
No 217
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.02 E-value=10 Score=23.23 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHhcCCCCCCCCcccccc
Q 042990 103 DKWLSSHSSCPKCRHCLIET 122 (165)
Q Consensus 103 ~~Wl~~~~~CP~CR~~~~~~ 122 (165)
+.|+..--.||+|+.++.-.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 34566667899999987654
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.39 E-value=60 Score=19.37 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=26.7
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+.|.+.+.+ +.+.. -+..||.+| ..|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 3579999988875 33322 567888877 347788777754
No 219
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.21 E-value=41 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=20.3
Q ss_pred CCCCcCccccccccC-CCeeeecCCCCccccHhh
Q 042990 69 GLDTECVICLSEFAA-GDRLRLLPKCNHGFHVRC 101 (165)
Q Consensus 69 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~C 101 (165)
+.+..|+.|.+.|.. .+.-...+.|.|..+..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 467899999999863 112223334666666555
No 220
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.69 E-value=6.6 Score=31.33 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCCcCccccccccCCCeeee-cCCCC--ccccHhhHHHHHhcCCCCCCCCcc
Q 042990 70 LDTECVICLSEFAAGDRLRL-LPKCN--HGFHVRCIDKWLSSHSSCPKCRHC 118 (165)
Q Consensus 70 ~~~~C~ICl~~~~~~~~~~~-l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~ 118 (165)
....|++|-..-..+ .++. -..=| +.+|..|-.+|--.+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 456899998874322 1111 00022 566667777886677789999664
No 221
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.52 E-value=48 Score=23.81 Aligned_cols=39 Identities=23% Similarity=0.523 Sum_probs=26.1
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCcccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLI 120 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 120 (165)
...|+.|.+.+.+++.+.. -+..||.+| ..|-.|+..+.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 3569999888876655543 567888776 34666666554
No 222
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.40 E-value=8.1 Score=24.52 Aligned_cols=18 Identities=39% Similarity=1.056 Sum_probs=13.7
Q ss_pred eecCCCCccccHhhHHHH
Q 042990 88 RLLPKCNHGFHVRCIDKW 105 (165)
Q Consensus 88 ~~l~~C~H~FH~~Ci~~W 105 (165)
+..+.|++.|+..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 455569999998887776
No 223
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.35 E-value=42 Score=20.25 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=26.7
Q ss_pred CCcCccccccccCCCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 71 DTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
...|+-|...+.+ .. +. .-+..||.+| ..|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RI--LR-AMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CC--EE-ETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc-ee--EE-ECCccccHHh--------cCcccCCCccCC
Confidence 4679999988874 22 22 2678899877 358888777653
No 224
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.02 E-value=60 Score=21.48 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=24.2
Q ss_pred CcCccccccccC-CCeeeecCCCCccccHhhHHHHHhcCCCCCCCCccccc
Q 042990 72 TECVICLSEFAA-GDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIE 121 (165)
Q Consensus 72 ~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 121 (165)
..|..|...+.. +.... .. =|..|+..|..+-+.....|..|...+..
T Consensus 30 F~C~~C~~~L~~~~~~~~-~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEE-EE-TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEE-EE-CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 456666666643 11121 11 45566666655543332356677665543
No 225
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=22.09 E-value=47 Score=21.10 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=20.8
Q ss_pred CCcCccccccccCCCeeee-cCCCCccccHhhHHH
Q 042990 71 DTECVICLSEFAAGDRLRL-LPKCNHGFHVRCIDK 104 (165)
Q Consensus 71 ~~~C~ICl~~~~~~~~~~~-l~~C~H~FH~~Ci~~ 104 (165)
...|.||.+.= .|..+.- .+.|.-.||-.|-.+
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 46799997641 1222221 124999999999776
No 226
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.15 E-value=28 Score=20.56 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=8.5
Q ss_pred CCCCCCCCccccc
Q 042990 109 HSSCPKCRHCLIE 121 (165)
Q Consensus 109 ~~~CP~CR~~~~~ 121 (165)
-+.||.|+..+..
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 4567888766654
Done!