Citrus Sinensis ID: 042990

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MVLSVLLCALICSLGLNSIIRCVVRCSSLVASRSGASNSAAILPNKGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQKIIGCSQAASSSENPVTAQETIVTITPLEPEGLIRNYRGIS
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MVLSVLLCALICSLGLNSIIRCVVRCSS*****************KGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIET***********************IV******************
xxxHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVLSVLLCALICSLGLNSIIRCVVRCSSLVASRSGASNSAAILPNKGIKQKALKTFPVVSYSAELNLAGLDTECVICLSEFAAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQKIIGCSQAASSSENPVTAQETIVTITPLEPEGLIRNYRGIS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
RING-H2 finger protein ATL78 probableQ6NQG7

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2L0B, chain A
Confidence level:very confident
Coverage over the Query: 37-121
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
2ks1, chain Bprobable Alignment | Template Structure