Query 042991
Match_columns 93
No_of_seqs 101 out of 1863
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 1.4E-17 3E-22 102.1 9.9 86 1-88 6-104 (229)
2 COG4566 TtrR Response regulato 99.7 2.2E-17 4.8E-22 97.2 8.3 89 1-90 10-110 (202)
3 COG2204 AtoC Response regulato 99.6 2.7E-15 5.9E-20 99.1 9.7 88 1-89 10-109 (464)
4 COG4567 Response regulator con 99.5 6.8E-14 1.5E-18 80.1 7.8 87 1-88 15-113 (182)
5 PF00072 Response_reg: Respons 99.5 1.2E-13 2.5E-18 75.6 8.5 88 1-89 4-104 (112)
6 COG4753 Response regulator con 99.5 1.4E-13 3.1E-18 91.1 8.0 88 1-88 7-108 (475)
7 COG3437 Response regulator con 99.4 5.6E-13 1.2E-17 85.2 7.4 89 1-90 20-123 (360)
8 COG4565 CitB Response regulato 99.4 2.4E-12 5.1E-17 77.4 8.7 88 1-88 6-106 (224)
9 COG3706 PleD Response regulato 99.3 1.2E-11 2.6E-16 81.5 9.2 87 1-88 138-238 (435)
10 PRK09836 DNA-binding transcrip 99.3 8.6E-11 1.9E-15 71.1 9.6 88 1-89 6-105 (227)
11 PRK10816 DNA-binding transcrip 99.3 9.2E-11 2E-15 70.8 9.6 88 1-89 6-105 (223)
12 PRK10529 DNA-binding transcrip 99.3 1.4E-10 3E-15 70.1 10.0 88 1-89 7-105 (225)
13 PRK11173 two-component respons 99.3 1.5E-10 3.2E-15 70.7 9.9 87 1-88 9-106 (237)
14 PRK10766 DNA-binding transcrip 99.2 1.8E-10 3.9E-15 69.4 9.9 88 1-89 8-106 (221)
15 PLN03029 type-a response regul 99.2 1.6E-10 3.6E-15 70.6 9.4 87 1-88 14-134 (222)
16 PRK10841 hybrid sensory kinase 99.2 1.5E-10 3.2E-15 82.7 9.9 87 1-88 807-905 (924)
17 PRK09468 ompR osmolarity respo 99.2 3E-10 6.6E-15 69.3 9.8 87 1-88 11-109 (239)
18 COG2197 CitB Response regulato 99.2 3.5E-10 7.6E-15 68.8 9.8 89 1-89 6-107 (211)
19 KOG0519 Sensory transduction h 99.2 4.1E-11 8.8E-16 84.3 6.3 88 1-89 672-773 (786)
20 PRK10046 dpiA two-component re 99.2 3.8E-10 8.2E-15 68.9 9.8 88 1-88 10-110 (225)
21 PRK10701 DNA-binding transcrip 99.2 4.8E-10 1E-14 68.5 9.9 87 1-88 7-104 (240)
22 PRK10161 transcriptional regul 99.2 5.4E-10 1.2E-14 67.7 9.9 87 1-88 8-108 (229)
23 PRK11107 hybrid sensory histid 99.2 3E-10 6.5E-15 80.4 9.9 88 1-89 673-774 (919)
24 COG0784 CheY FOG: CheY-like re 99.2 6.5E-10 1.4E-14 62.0 9.4 87 1-88 11-111 (130)
25 PRK10336 DNA-binding transcrip 99.2 5.9E-10 1.3E-14 66.8 9.8 87 1-88 6-104 (219)
26 PRK13856 two-component respons 99.2 5.6E-10 1.2E-14 68.4 9.7 87 1-88 7-105 (241)
27 TIGR03787 marine_sort_RR prote 99.2 5.6E-10 1.2E-14 67.5 9.6 87 1-88 6-106 (227)
28 PRK10643 DNA-binding transcrip 99.2 6E-10 1.3E-14 66.9 9.5 87 1-88 6-104 (222)
29 PRK15347 two component system 99.2 4.9E-10 1.1E-14 79.4 10.0 87 1-88 696-798 (921)
30 TIGR01387 cztR_silR_copR heavy 99.1 9.4E-10 2E-14 65.9 9.6 87 1-88 4-102 (218)
31 PRK11083 DNA-binding response 99.1 9.7E-10 2.1E-14 66.2 9.5 88 1-89 9-108 (228)
32 TIGR02154 PhoB phosphate regul 99.1 1.2E-09 2.5E-14 65.7 9.6 88 1-89 8-109 (226)
33 PRK11517 transcriptional regul 99.1 1.4E-09 3E-14 65.5 9.9 87 1-88 6-103 (223)
34 TIGR02956 TMAO_torS TMAO reduc 99.1 8.3E-10 1.8E-14 78.7 9.8 87 1-88 708-809 (968)
35 PRK10955 DNA-binding transcrip 99.1 2E-09 4.3E-14 65.2 9.5 86 1-88 7-103 (232)
36 TIGR02915 PEP_resp_reg putativ 99.1 1.3E-09 2.9E-14 72.3 9.4 86 1-89 4-106 (445)
37 PRK15115 response regulator Gl 99.1 1E-09 2.2E-14 72.8 8.8 87 1-88 11-109 (444)
38 CHL00148 orf27 Ycf27; Reviewed 99.1 2.4E-09 5.2E-14 65.1 9.7 86 1-88 12-109 (240)
39 PRK10923 glnG nitrogen regulat 99.1 1.5E-09 3.2E-14 72.5 9.5 87 1-88 9-107 (469)
40 PRK11466 hybrid sensory histid 99.1 1.4E-09 3.1E-14 77.2 9.7 87 1-88 687-786 (914)
41 PRK09959 hybrid sensory histid 99.1 1.8E-09 3.8E-14 78.6 10.2 88 1-89 964-1063(1197)
42 PRK11361 acetoacetate metaboli 99.1 1.8E-09 3.9E-14 71.8 9.4 87 1-88 10-108 (457)
43 PRK09958 DNA-binding transcrip 99.1 4E-09 8.6E-14 62.8 9.7 87 1-88 6-105 (204)
44 PRK10360 DNA-binding transcrip 99.0 5.9E-09 1.3E-13 61.7 9.8 89 1-89 7-105 (196)
45 PRK10840 transcriptional regul 99.0 6.7E-09 1.4E-13 62.9 9.9 88 1-88 9-112 (216)
46 TIGR01818 ntrC nitrogen regula 99.0 3.6E-09 7.8E-14 70.5 9.3 87 1-88 4-102 (463)
47 PRK10365 transcriptional regul 99.0 2.2E-09 4.8E-14 71.0 8.1 87 1-88 11-109 (441)
48 PRK10430 DNA-binding transcrip 99.0 8.5E-09 1.8E-13 63.4 10.0 89 1-89 7-110 (239)
49 PRK10710 DNA-binding transcrip 99.0 1.2E-08 2.7E-13 61.9 9.8 87 1-88 16-113 (240)
50 PRK09581 pleD response regulat 99.0 4E-09 8.6E-14 69.4 7.2 87 1-89 161-261 (457)
51 PRK13558 bacterio-opsin activa 98.9 8.2E-09 1.8E-13 71.4 8.9 87 1-88 13-111 (665)
52 PRK09483 response regulator; P 98.9 2.3E-08 4.9E-13 60.0 9.7 89 1-89 7-108 (217)
53 PRK15479 transcriptional regul 98.9 2.4E-08 5.1E-13 59.9 9.7 88 1-89 6-105 (221)
54 PRK09581 pleD response regulat 98.9 1.9E-08 4.2E-13 66.2 10.0 87 1-88 8-108 (457)
55 COG3947 Response regulator con 98.9 2.4E-09 5.2E-14 67.5 5.3 86 1-89 6-103 (361)
56 PRK11091 aerobic respiration c 98.9 1.5E-08 3.3E-13 71.1 9.8 86 1-88 531-631 (779)
57 PRK09935 transcriptional regul 98.9 7.1E-08 1.5E-12 57.4 9.9 87 1-88 9-109 (210)
58 TIGR02875 spore_0_A sporulatio 98.9 5.2E-08 1.1E-12 60.5 9.3 89 1-89 8-111 (262)
59 PRK09390 fixJ response regulat 98.8 4.5E-08 9.7E-13 57.6 8.4 88 1-89 9-108 (202)
60 PRK13837 two-component VirA-li 98.8 4.3E-08 9.4E-13 69.6 9.2 87 1-89 703-801 (828)
61 PRK12555 chemotaxis-specific m 98.8 9.6E-08 2.1E-12 61.6 9.5 87 1-87 6-106 (337)
62 PRK11475 DNA-binding transcrip 98.8 1.1E-07 2.4E-12 57.8 8.9 81 8-89 3-102 (207)
63 PRK14084 two-component respons 98.8 9.3E-08 2E-12 58.8 8.6 86 1-88 6-104 (246)
64 COG3707 AmiR Response regulato 98.7 2.9E-08 6.2E-13 59.2 4.2 86 2-88 12-109 (194)
65 COG2201 CheB Chemotaxis respon 98.7 2.3E-07 5E-12 60.1 8.5 88 1-88 7-108 (350)
66 PRK00742 chemotaxis-specific m 98.7 3.4E-07 7.5E-12 59.4 9.3 87 1-88 9-110 (354)
67 PRK11697 putative two-componen 98.7 5.6E-07 1.2E-11 55.0 9.2 86 1-88 7-104 (238)
68 PRK10610 chemotaxis regulatory 98.6 2.1E-06 4.5E-11 46.5 10.1 88 1-88 11-112 (129)
69 PRK10651 transcriptional regul 98.6 1.2E-06 2.7E-11 52.1 9.7 88 1-88 12-112 (216)
70 PRK15369 two component system 98.6 1.3E-06 2.7E-11 51.6 9.5 89 1-89 9-110 (211)
71 PRK10403 transcriptional regul 98.6 1.5E-06 3.2E-11 51.6 9.5 87 1-88 12-112 (215)
72 PRK13435 response regulator; P 98.5 2.6E-06 5.6E-11 48.4 8.7 85 1-89 11-108 (145)
73 PRK10693 response regulator of 98.5 1.1E-06 2.4E-11 56.1 7.2 64 25-88 2-77 (303)
74 cd00156 REC Signal receiver do 98.5 5.3E-06 1.1E-10 43.1 8.8 88 1-89 3-102 (113)
75 PRK13557 histidine kinase; Pro 98.4 4.9E-06 1.1E-10 55.9 8.9 87 1-88 421-521 (540)
76 PRK10100 DNA-binding transcrip 98.3 1.1E-05 2.5E-10 49.3 8.0 85 1-88 16-113 (216)
77 PRK09191 two-component respons 98.2 2.4E-05 5.3E-10 48.4 9.3 86 1-89 143-241 (261)
78 PRK15411 rcsA colanic acid cap 98.0 6.1E-05 1.3E-09 45.8 7.9 88 1-89 6-110 (207)
79 PRK15029 arginine decarboxylas 97.6 0.00032 6.9E-09 50.0 6.6 60 7-67 20-96 (755)
80 COG3279 LytT Response regulato 97.1 0.0018 3.8E-08 40.5 5.2 86 1-88 7-105 (244)
81 PRK11107 hybrid sensory histid 96.6 0.0084 1.8E-07 43.3 6.2 83 1-89 542-639 (919)
82 PF03709 OKR_DC_1_N: Orn/Lys/A 93.6 0.19 4.2E-06 27.8 3.9 76 9-85 7-96 (115)
83 TIGR03815 CpaE_hom_Actino heli 91.9 0.26 5.6E-06 31.9 3.4 35 55-89 40-75 (322)
84 smart00448 REC cheY-homologous 91.1 0.66 1.4E-05 19.7 4.1 35 2-37 7-41 (55)
85 COG3706 PleD Response regulato 90.8 0.31 6.8E-06 33.2 3.0 68 20-88 13-90 (435)
86 cd04728 ThiG Thiazole synthase 90.8 2.9 6.3E-05 26.5 9.1 69 17-85 121-204 (248)
87 PRK11840 bifunctional sulfur c 90.4 3.7 7.9E-05 27.2 8.7 69 17-85 195-278 (326)
88 PRK00208 thiG thiazole synthas 89.1 4.2 9.1E-05 25.9 9.1 68 17-85 121-204 (250)
89 PF06490 FleQ: Flagellar regul 87.3 3.3 7.2E-05 22.7 6.0 82 1-88 5-96 (109)
90 cd02071 MM_CoA_mut_B12_BD meth 86.1 4.2 9.1E-05 22.6 7.2 78 8-86 16-110 (122)
91 COG0134 TrpC Indole-3-glycerol 84.5 8.3 0.00018 24.6 7.4 73 13-85 150-236 (254)
92 PRK12704 phosphodiesterase; Pr 84.5 0.48 1E-05 33.1 1.0 35 55-89 248-284 (520)
93 PF05690 ThiG: Thiazole biosyn 81.1 3 6.4E-05 26.4 3.4 31 55-85 174-204 (247)
94 TIGR00640 acid_CoA_mut_C methy 79.4 9.3 0.0002 21.7 8.1 77 7-85 18-112 (132)
95 COG2022 ThiG Uncharacterized e 75.0 6 0.00013 25.1 3.4 31 55-85 181-211 (262)
96 cd04727 pdxS PdxS is a subunit 71.8 17 0.00037 23.7 5.0 39 46-84 182-224 (283)
97 COG1908 FrhD Coenzyme F420-red 70.6 8.2 0.00018 21.9 3.0 24 62-85 37-60 (132)
98 TIGR00343 pyridoxal 5'-phospha 70.0 16 0.00036 23.8 4.6 30 55-84 196-227 (287)
99 CHL00162 thiG thiamin biosynth 69.1 28 0.00061 22.5 8.7 31 55-85 188-218 (267)
100 cd00331 IGPS Indole-3-glycerol 67.8 14 0.0003 22.5 4.0 30 55-84 171-200 (217)
101 KOG4175 Tryptophan synthase al 67.7 7.5 0.00016 24.2 2.7 31 55-85 94-130 (268)
102 PF02662 FlpD: Methyl-viologen 67.1 8.8 0.00019 21.6 2.8 22 63-84 37-58 (124)
103 PF04131 NanE: Putative N-acet 67.0 23 0.00051 21.7 4.7 70 13-84 86-172 (192)
104 PRK01130 N-acetylmannosamine-6 66.8 16 0.00034 22.4 4.1 30 55-84 172-201 (221)
105 PRK15400 lysine decarboxylase 64.8 20 0.00043 26.5 4.7 57 8-65 19-85 (714)
106 PRK04180 pyridoxal biosynthesi 64.4 30 0.00065 22.7 5.0 30 55-84 202-233 (293)
107 PF00218 IGPS: Indole-3-glycer 62.6 38 0.00083 21.7 5.5 76 10-85 149-238 (254)
108 cd04729 NanE N-acetylmannosami 62.0 22 0.00047 21.7 4.1 31 55-85 176-206 (219)
109 PRK15399 lysine decarboxylase 61.4 25 0.00054 26.0 4.7 58 8-66 19-86 (713)
110 COG4999 Uncharacterized domain 60.1 7.5 0.00016 22.1 1.6 19 70-88 95-113 (140)
111 PRK13111 trpA tryptophan synth 59.7 44 0.00094 21.4 6.0 32 55-86 88-125 (258)
112 PF08844 DUF1815: Domain of un 58.3 8.4 0.00018 20.8 1.5 28 6-33 17-45 (105)
113 cd02067 B12-binding B12 bindin 57.1 30 0.00066 18.8 6.1 77 8-86 16-110 (119)
114 PRK00278 trpC indole-3-glycero 57.1 24 0.00052 22.4 3.7 74 11-84 152-239 (260)
115 COG0159 TrpA Tryptophan syntha 56.6 52 0.0011 21.3 5.6 31 55-85 93-129 (265)
116 cd04732 HisA HisA. Phosphorib 56.3 29 0.00063 21.2 4.0 30 55-84 189-218 (234)
117 cd04722 TIM_phosphate_binding 55.9 33 0.00071 19.8 4.0 30 55-84 169-198 (200)
118 PRK13802 bifunctional indole-3 55.5 84 0.0018 23.4 6.9 75 10-84 151-239 (695)
119 PRK10128 2-keto-3-deoxy-L-rham 54.7 34 0.00074 22.0 4.1 33 55-87 67-99 (267)
120 TIGR03239 GarL 2-dehydro-3-deo 54.3 31 0.00066 21.9 3.8 33 55-87 61-93 (249)
121 TIGR00007 phosphoribosylformim 52.5 40 0.00086 20.7 4.1 30 55-84 188-217 (230)
122 PF01408 GFO_IDH_MocA: Oxidore 52.3 19 0.00041 19.3 2.5 35 55-89 63-97 (120)
123 cd06822 PLPDE_III_YBL036c_euk 52.2 29 0.00063 21.7 3.5 28 55-82 22-49 (227)
124 PRK10618 phosphotransfer inter 51.4 17 0.00036 27.5 2.6 28 1-29 695-722 (894)
125 COG1832 Predicted CoA-binding 49.7 51 0.0011 19.2 5.0 30 7-37 31-60 (140)
126 PRK10558 alpha-dehydro-beta-de 48.9 41 0.00089 21.4 3.8 33 55-87 68-100 (256)
127 PRK04302 triosephosphate isome 48.9 40 0.00086 20.8 3.7 31 55-85 172-202 (223)
128 PF02310 B12-binding: B12 bind 47.9 44 0.00096 17.9 4.1 30 7-37 16-48 (121)
129 PLN02591 tryptophan synthase 47.1 51 0.0011 21.0 4.0 32 55-86 188-219 (250)
130 COG2216 KdpB High-affinity K+ 46.6 22 0.00049 25.5 2.5 34 55-88 462-497 (681)
131 cd00945 Aldolase_Class_I Class 46.5 44 0.00095 19.5 3.6 29 56-84 172-200 (201)
132 TIGR00273 iron-sulfur cluster- 46.1 41 0.00089 23.3 3.7 29 7-36 52-80 (432)
133 PRK00748 1-(5-phosphoribosyl)- 44.5 57 0.0012 20.0 3.9 30 55-84 189-219 (233)
134 cd02809 alpha_hydroxyacid_oxid 44.3 53 0.0011 21.3 3.9 29 56-84 227-255 (299)
135 TIGR00262 trpA tryptophan synt 44.0 84 0.0018 20.0 6.3 32 55-86 86-123 (256)
136 cd04730 NPD_like 2-Nitropropan 42.9 65 0.0014 19.7 4.0 31 55-85 155-185 (236)
137 PRK13587 1-(5-phosphoribosyl)- 42.0 74 0.0016 19.9 4.1 31 55-85 191-221 (234)
138 PF01976 DUF116: Protein of un 41.7 60 0.0013 19.2 3.5 32 10-42 77-108 (158)
139 cd04740 DHOD_1B_like Dihydroor 41.6 68 0.0015 20.6 4.1 28 55-82 230-257 (296)
140 COG0107 HisF Imidazoleglycerol 41.5 40 0.00087 21.5 2.8 33 55-87 198-231 (256)
141 TIGR03151 enACPred_II putative 41.0 63 0.0014 21.2 3.8 73 12-84 102-189 (307)
142 PRK13585 1-(5-phosphoribosyl)- 40.9 73 0.0016 19.7 4.0 30 55-84 192-221 (241)
143 PF11307 DUF3109: Protein of u 39.7 17 0.00037 22.1 1.0 20 71-91 105-124 (183)
144 PRK05718 keto-hydroxyglutarate 39.7 93 0.002 19.3 7.8 22 65-87 74-95 (212)
145 PRK05458 guanosine 5'-monophos 39.6 71 0.0015 21.3 3.9 30 55-84 200-229 (326)
146 cd04723 HisA_HisF Phosphoribos 38.9 87 0.0019 19.5 4.1 30 55-84 188-217 (233)
147 PF03102 NeuB: NeuB family; I 38.8 1E+02 0.0022 19.6 6.4 69 6-75 56-132 (241)
148 cd04731 HisF The cyclase subun 38.3 79 0.0017 19.6 3.9 30 55-84 192-222 (243)
149 COG2185 Sbm Methylmalonyl-CoA 37.9 85 0.0018 18.4 5.3 77 7-85 28-122 (143)
150 cd02811 IDI-2_FMN Isopentenyl- 37.7 67 0.0014 21.2 3.6 29 55-83 254-282 (326)
151 cd08555 PI-PLCc_GDPD_SF Cataly 37.4 66 0.0014 18.9 3.3 30 55-84 148-177 (179)
152 KOG2335 tRNA-dihydrouridine sy 37.2 1.3E+02 0.0029 20.4 7.3 30 55-84 202-232 (358)
153 cd04737 LOX_like_FMN L-Lactate 37.2 85 0.0018 21.1 4.0 30 55-84 275-304 (351)
154 PRK01033 imidazole glycerol ph 36.6 97 0.0021 19.6 4.1 30 55-84 195-225 (258)
155 cd04726 KGPDC_HPS 3-Keto-L-gul 36.6 86 0.0019 18.6 3.8 30 55-85 157-186 (202)
156 TIGR01304 IMP_DH_rel_2 IMP deh 36.4 80 0.0017 21.5 3.8 29 56-84 255-283 (369)
157 PF13653 GDPD_2: Glycerophosph 35.6 41 0.00089 14.0 3.1 19 66-84 8-26 (30)
158 PRK00994 F420-dependent methyl 35.6 58 0.0013 21.0 2.9 34 55-89 86-119 (277)
159 COG3684 LacD Tagatose-1,6-bisp 35.2 90 0.002 20.4 3.7 30 55-84 229-262 (306)
160 PRK11152 ilvM acetolactate syn 35.1 31 0.00066 17.8 1.4 23 2-25 11-33 (76)
161 COG1139 Uncharacterized conser 35.0 1.1E+02 0.0024 21.5 4.3 27 9-36 68-94 (459)
162 PRK07259 dihydroorotate dehydr 34.9 84 0.0018 20.3 3.7 28 55-82 233-260 (301)
163 PRK06806 fructose-bisphosphate 34.7 1.3E+02 0.0028 19.5 4.6 37 46-82 188-227 (281)
164 PLN02274 inosine-5'-monophosph 34.7 82 0.0018 22.3 3.8 30 55-84 350-379 (505)
165 cd02810 DHOD_DHPD_FMN Dihydroo 34.6 83 0.0018 20.0 3.6 27 56-82 243-269 (289)
166 PRK06843 inosine 5-monophospha 34.5 89 0.0019 21.6 3.8 30 55-84 255-284 (404)
167 PF02589 DUF162: Uncharacteris 34.2 45 0.00098 19.8 2.3 26 10-36 3-28 (189)
168 cd02940 DHPD_FMN Dihydropyrimi 34.1 89 0.0019 20.2 3.7 28 56-83 252-279 (299)
169 PRK06737 acetolactate synthase 34.1 32 0.00069 17.7 1.4 24 2-26 10-33 (76)
170 PRK00043 thiE thiamine-phospha 34.1 1.1E+02 0.0023 18.4 3.9 29 55-84 159-187 (212)
171 TIGR00736 nifR3_rel_arch TIM-b 34.0 1E+02 0.0022 19.4 3.9 29 56-84 191-219 (231)
172 TIGR03572 WbuZ glycosyl amidat 33.8 1.1E+02 0.0025 18.7 4.1 30 55-84 196-226 (232)
173 PRK03094 hypothetical protein; 33.4 27 0.00058 18.3 1.0 19 9-28 11-29 (80)
174 TIGR01037 pyrD_sub1_fam dihydr 33.2 1E+02 0.0022 19.8 3.9 28 55-82 233-260 (300)
175 cd04824 eu_ALAD_PBGS_cysteine_ 33.2 1.5E+02 0.0033 19.8 4.6 36 46-81 250-288 (320)
176 PF01180 DHO_dh: Dihydroorotat 33.2 58 0.0012 21.0 2.8 28 55-82 243-270 (295)
177 cd02911 arch_FMN Archeal FMN-b 33.2 1.1E+02 0.0023 19.2 3.9 35 49-83 184-218 (233)
178 TIGR01306 GMP_reduct_2 guanosi 32.9 1E+02 0.0022 20.6 3.8 31 55-85 197-227 (321)
179 PRK02083 imidazole glycerol ph 32.5 1.1E+02 0.0023 19.2 3.8 31 55-85 196-227 (253)
180 cd04724 Tryptophan_synthase_al 32.3 90 0.0019 19.6 3.4 30 55-84 75-110 (242)
181 PRK05437 isopentenyl pyrophosp 32.3 96 0.0021 20.8 3.7 29 55-83 260-288 (352)
182 TIGR00735 hisF imidazoleglycer 32.3 1.1E+02 0.0024 19.2 3.9 30 55-84 198-228 (254)
183 cd04741 DHOD_1A_like Dihydroor 32.2 1.1E+02 0.0024 19.8 3.9 28 56-83 243-270 (294)
184 TIGR02151 IPP_isom_2 isopenten 32.1 86 0.0019 20.8 3.5 29 55-83 253-281 (333)
185 KOG2663 Acetolactate synthase, 32.0 75 0.0016 20.7 3.0 36 1-36 84-121 (309)
186 PRK08649 inosine 5-monophospha 31.8 94 0.002 21.1 3.6 29 56-84 256-284 (368)
187 PRK12858 tagatose 1,6-diphosph 31.7 90 0.0019 20.9 3.5 30 55-84 240-275 (340)
188 PRK07455 keto-hydroxyglutarate 31.6 1.2E+02 0.0026 18.2 4.3 56 26-82 112-177 (187)
189 PRK15320 transcriptional activ 31.5 70 0.0015 20.1 2.7 77 9-86 15-103 (251)
190 cd00381 IMPDH IMPDH: The catal 31.3 1E+02 0.0022 20.4 3.7 29 56-84 197-225 (325)
191 cd05212 NAD_bind_m-THF_DH_Cycl 30.8 1.1E+02 0.0024 17.6 3.6 32 3-35 36-71 (140)
192 PF03698 UPF0180: Uncharacteri 30.8 52 0.0011 17.2 1.8 21 9-30 11-31 (80)
193 TIGR01305 GMP_reduct_1 guanosi 30.2 1E+02 0.0022 20.8 3.5 31 55-85 211-241 (343)
194 PRK07695 transcriptional regul 30.2 1.3E+02 0.0028 18.1 3.9 27 55-82 148-174 (201)
195 KOG0538 Glycolate oxidase [Ene 30.1 84 0.0018 21.1 3.1 33 55-88 222-254 (363)
196 TIGR02708 L_lactate_ox L-lacta 30.0 1.2E+02 0.0026 20.7 3.8 33 55-87 282-315 (367)
197 PRK08673 3-deoxy-7-phosphohept 29.9 1.1E+02 0.0024 20.5 3.6 29 55-83 261-295 (335)
198 PLN02535 glycolate oxidase 29.9 1.3E+02 0.0027 20.5 3.9 33 55-87 277-310 (364)
199 cd02072 Glm_B12_BD B12 binding 29.6 1.2E+02 0.0025 17.4 4.8 32 8-40 16-50 (128)
200 TIGR01302 IMP_dehydrog inosine 29.4 1.2E+02 0.0027 21.0 4.0 31 55-85 326-356 (450)
201 PRK09283 delta-aminolevulinic 29.2 1.8E+02 0.0039 19.6 4.4 37 45-81 252-290 (323)
202 cd02069 methionine_synthase_B1 28.8 1.5E+02 0.0032 18.3 5.6 31 8-39 105-138 (213)
203 PLN02626 malate synthase 28.5 63 0.0014 23.2 2.4 23 62-84 95-117 (551)
204 PRK03958 tRNA 2'-O-methylase; 28.1 1.5E+02 0.0032 18.1 3.8 35 2-37 38-74 (176)
205 PF01993 MTD: methylene-5,6,7, 28.1 48 0.001 21.3 1.7 34 55-89 85-118 (276)
206 TIGR00734 hisAF_rel hisA/hisF 28.0 1.5E+02 0.0034 18.3 4.1 31 55-85 183-213 (221)
207 PF04895 DUF651: Archaeal prot 27.9 1.2E+02 0.0025 16.9 3.1 27 7-37 55-81 (110)
208 COG4396 Mu-like prophage host- 27.8 25 0.00054 20.5 0.4 16 76-91 154-169 (170)
209 cd00429 RPE Ribulose-5-phospha 27.8 1.3E+02 0.0028 17.9 3.6 29 56-85 166-194 (211)
210 COG0329 DapA Dihydrodipicolina 27.4 1.5E+02 0.0033 19.4 3.9 32 55-86 72-107 (299)
211 PF00387 PI-PLC-Y: Phosphatidy 27.4 29 0.00064 19.4 0.6 36 55-90 79-118 (118)
212 cd04733 OYE_like_2_FMN Old yel 27.3 1.5E+02 0.0032 19.6 3.9 29 55-83 291-319 (338)
213 PRK07565 dihydroorotate dehydr 27.3 1.3E+02 0.0028 19.8 3.7 29 55-83 238-266 (334)
214 cd04823 ALAD_PBGS_aspartate_ri 26.8 2E+02 0.0044 19.3 4.6 36 46-81 250-287 (320)
215 PRK06512 thiamine-phosphate py 26.8 1.4E+02 0.003 18.6 3.5 28 55-83 163-190 (221)
216 TIGR01036 pyrD_sub2 dihydrooro 26.5 1.3E+02 0.0028 20.1 3.5 27 55-81 287-313 (335)
217 COG0673 MviM Predicted dehydro 26.3 57 0.0012 21.0 1.9 36 55-90 68-103 (342)
218 PRK07107 inosine 5-monophospha 26.3 1E+02 0.0023 21.8 3.2 30 56-85 352-381 (502)
219 cd00564 TMP_TenI Thiamine mono 26.2 1.4E+02 0.0031 17.3 4.0 29 55-84 149-177 (196)
220 cd08605 GDPD_GDE5_like_1_plant 26.0 1.6E+02 0.0034 18.8 3.8 30 55-84 249-279 (282)
221 PRK05581 ribulose-phosphate 3- 25.9 1.6E+02 0.0034 17.8 3.7 28 58-85 171-198 (220)
222 PF01081 Aldolase: KDPG and KH 25.7 1.7E+02 0.0037 18.0 6.2 25 64-88 66-90 (196)
223 TIGR03128 RuMP_HxlA 3-hexulose 25.7 1.5E+02 0.0032 17.8 3.5 27 58-84 159-185 (206)
224 cd04738 DHOD_2_like Dihydrooro 25.7 1.4E+02 0.0031 19.6 3.6 27 56-82 280-306 (327)
225 TIGR01344 malate_syn_A malate 25.6 1E+02 0.0022 22.1 3.0 24 61-84 70-93 (511)
226 PF08415 NRPS: Nonribosomal pe 25.6 90 0.0019 14.8 2.2 13 55-67 22-34 (58)
227 PRK05286 dihydroorotate dehydr 25.5 1.4E+02 0.003 19.9 3.6 27 56-82 289-315 (344)
228 PRK02506 dihydroorotate dehydr 25.3 1.5E+02 0.0033 19.4 3.7 28 55-82 240-267 (310)
229 PRK13384 delta-aminolevulinic 25.2 2.2E+02 0.0048 19.1 4.6 36 46-81 254-291 (322)
230 PRK08999 hypothetical protein; 25.1 2E+02 0.0043 18.6 4.5 28 55-83 279-306 (312)
231 PRK10799 metal-binding protein 24.7 1.6E+02 0.0035 18.5 3.6 28 60-87 168-195 (247)
232 TIGR02370 pyl_corrinoid methyl 24.6 1.7E+02 0.0037 17.7 5.9 31 8-39 101-134 (197)
233 PRK03659 glutathione-regulated 24.5 2.8E+02 0.0061 20.1 7.6 31 55-87 490-520 (601)
234 cd04906 ACT_ThrD-I_1 First of 24.2 1.1E+02 0.0025 15.5 3.8 23 6-29 53-75 (85)
235 cd04739 DHOD_like Dihydroorota 24.2 1.6E+02 0.0035 19.4 3.7 29 55-83 236-264 (325)
236 TIGR02313 HpaI-NOT-DapA 2,4-di 23.9 1.9E+02 0.0041 18.7 3.9 32 55-86 68-103 (294)
237 cd00727 malate_synt_A Malate s 23.9 1.1E+02 0.0024 21.8 3.0 23 62-84 71-93 (511)
238 PRK00724 formate dehydrogenase 23.9 1.6E+02 0.0036 18.8 3.6 28 58-85 201-228 (263)
239 COG0327 Uncharacterized conser 23.7 2E+02 0.0044 18.3 4.0 35 56-90 167-201 (250)
240 cd00952 CHBPH_aldolase Trans-o 23.5 2.1E+02 0.0045 18.7 4.0 32 55-86 76-111 (309)
241 PRK11197 lldD L-lactate dehydr 23.5 1.7E+02 0.0036 20.1 3.6 30 55-84 299-328 (381)
242 cd08563 GDPD_TtGDE_like Glycer 23.4 1.8E+02 0.0039 17.8 3.6 29 55-84 199-227 (230)
243 COG1778 Low specificity phosph 23.4 1.8E+02 0.0039 17.5 3.7 29 55-83 50-78 (170)
244 PRK05567 inosine 5'-monophosph 23.3 1.7E+02 0.0036 20.6 3.7 30 55-84 330-359 (486)
245 cd03332 LMO_FMN L-Lactate 2-mo 23.2 1.8E+02 0.0038 20.0 3.7 30 55-84 307-336 (383)
246 cd02801 DUS_like_FMN Dihydrour 23.2 1.9E+02 0.004 17.6 3.8 28 55-82 182-210 (231)
247 cd02808 GltS_FMN Glutamate syn 23.1 1.7E+02 0.0037 19.9 3.7 28 55-82 284-311 (392)
248 PF07688 KaiA: KaiA domain; I 23.0 1.4E+02 0.0031 19.4 3.1 61 4-65 9-80 (283)
249 PF02887 PK_C: Pyruvate kinase 22.9 45 0.00098 18.2 0.8 34 53-87 36-69 (117)
250 PF02634 FdhD-NarQ: FdhD/NarQ 22.9 1.6E+02 0.0035 18.5 3.3 31 55-85 169-199 (236)
251 cd02070 corrinoid_protein_B12- 22.8 1.9E+02 0.0041 17.5 6.2 74 8-86 99-192 (201)
252 PF00356 LacI: Bacterial regul 22.7 97 0.0021 14.1 1.8 17 5-21 28-44 (46)
253 TIGR00044 pyridoxal phosphate 22.6 1.7E+02 0.0037 18.1 3.4 28 55-82 27-54 (229)
254 PRK09255 malate synthase; Vali 22.5 1.2E+02 0.0027 21.8 3.0 25 60-84 90-114 (531)
255 cd08570 GDPD_YPL206cp_fungi Gl 22.4 2E+02 0.0043 17.7 3.7 29 55-84 203-231 (234)
256 cd00897 UGPase_euk Eukaryotic 22.2 1.3E+02 0.0028 19.8 2.9 23 55-77 51-73 (300)
257 TIGR00486 YbgI_SA1388 dinuclea 22.2 1.6E+02 0.0036 18.5 3.3 32 57-88 167-198 (249)
258 PRK07315 fructose-bisphosphate 22.2 2.2E+02 0.0049 18.6 4.0 29 56-84 77-105 (293)
259 cd08606 GDPD_YPL110cp_fungi Gl 22.0 2.1E+02 0.0046 18.2 3.8 31 55-85 244-275 (286)
260 PRK08318 dihydropyrimidine deh 21.9 1.8E+02 0.0039 19.9 3.6 28 56-83 253-280 (420)
261 COG1954 GlpP Glycerol-3-phosph 21.8 1.5E+02 0.0032 18.1 2.8 27 55-81 143-169 (181)
262 cd04908 ACT_Bt0572_1 N-termina 21.8 1.1E+02 0.0024 14.5 2.2 20 2-21 9-28 (66)
263 COG3010 NanE Putative N-acetyl 21.7 2.3E+02 0.0049 18.0 4.7 62 23-84 131-208 (229)
264 TIGR01232 lacD tagatose 1,6-di 21.5 2.4E+02 0.0052 19.0 4.0 30 55-84 240-275 (325)
265 PF01784 NIF3: NIF3 (NGG1p int 21.4 1.5E+02 0.0032 18.6 3.0 28 60-87 173-200 (241)
266 COG2873 MET17 O-acetylhomoseri 21.3 3E+02 0.0064 19.2 5.0 72 9-82 116-202 (426)
267 PRK10206 putative oxidoreducta 21.3 1.1E+02 0.0024 20.2 2.5 25 65-89 75-99 (344)
268 PRK12399 tagatose 1,6-diphosph 21.0 2.5E+02 0.0053 18.9 4.0 30 55-84 239-274 (324)
269 cd08581 GDPD_like_1 Glyceropho 21.0 2.1E+02 0.0045 17.7 3.5 30 55-85 198-227 (229)
270 PRK05282 (alpha)-aspartyl dipe 20.8 2.3E+02 0.0051 17.9 5.2 29 8-37 50-78 (233)
271 cd04736 MDH_FMN Mandelate dehy 20.7 2.2E+02 0.0048 19.4 3.8 33 55-87 288-321 (361)
272 cd03422 YedF YedF is a bacteri 20.6 1.3E+02 0.0028 14.8 2.4 16 6-21 37-52 (69)
273 cd08572 GDPD_GDE5_like Glycero 20.6 2.4E+02 0.0052 18.3 3.9 30 55-84 260-290 (293)
274 PRK07807 inosine 5-monophospha 20.5 1.8E+02 0.004 20.5 3.5 31 55-85 329-359 (479)
275 PRK13562 acetolactate synthase 20.5 68 0.0015 16.9 1.1 20 2-21 10-29 (84)
276 PF06953 ArsD: Arsenical resis 20.3 55 0.0012 18.6 0.8 65 8-78 29-101 (123)
277 cd02922 FCB2_FMN Flavocytochro 20.3 2.3E+02 0.005 19.0 3.8 29 55-83 270-298 (344)
278 smart00149 PLCYc Phospholipase 20.2 62 0.0014 18.1 1.0 33 55-87 77-113 (115)
279 PLN02826 dihydroorotate dehydr 20.1 2E+02 0.0043 19.9 3.5 28 55-82 340-367 (409)
280 PTZ00314 inosine-5'-monophosph 20.0 2E+02 0.0043 20.4 3.6 30 55-84 343-372 (495)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.76 E-value=1.4e-17 Score=102.09 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh----cCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS----REIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~----~~~pii~lt~~~~ 67 (93)
|||++..+..+..+|+..||+ +.++.++.+|++.+... ++ +++|++++..+. ..+|||++|+.++
T Consensus 6 veDd~~i~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~ 83 (229)
T COG0745 6 VEDDPELAELLKEYLEEEGYE-VDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDD 83 (229)
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCc
Confidence 689999999999999999999 99999999999998754 32 345666644333 7789999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
..+.+.+++.|||||++|||+
T Consensus 84 ~~d~v~gl~~GADDYl~KPf~ 104 (229)
T COG0745 84 EEDRVLGLEAGADDYLTKPFS 104 (229)
T ss_pred HHHHHHHHhCcCCeeeeCCCC
Confidence 999999999999999999998
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.74 E-value=2.2e-17 Score=97.23 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=76.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc---------cCCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE---------QSANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
||||...++.+..+|+..||+ +..+.|+++.+.......+ ++++|+++ +......+|||++|++++.
T Consensus 10 VDDD~~vr~al~~Ll~s~G~~-v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDI 88 (202)
T COG4566 10 VDDDESVRDALAFLLESAGFQ-VKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDI 88 (202)
T ss_pred EcCcHHHHHHHHHHHHhCCce-eeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 689999999999999999999 9999999999988643332 24567776 5555599999999999999
Q ss_pred HHHHHHHHcCCcceeeccchhh
Q 042991 69 VRIDRYLEDGAEDSETCQMWAR 90 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~~ 90 (93)
...++++++||.|||.||++.+
T Consensus 89 pmaV~AmK~GAvDFLeKP~~~q 110 (202)
T COG4566 89 PMAVQAMKAGAVDFLEKPFSEQ 110 (202)
T ss_pred HHHHHHHHcchhhHHhCCCchH
Confidence 9999999999999999999743
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.64 E-value=2.7e-15 Score=99.11 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc---------cCCCchHHHh---hhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE---------QSANGFDVRT---IYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~l~---~~~~~~pii~lt~~~~~ 68 (93)
|||+...+..+...|+..||. +..+.++.+|+..+..... ++++|++++. ...+++|||++|++++.
T Consensus 10 VDDd~~ir~~l~~~L~~~G~~-v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i 88 (464)
T COG2204 10 VDDDPDIRELLEQALELAGYE-VVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDI 88 (464)
T ss_pred EeCCHHHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCH
Confidence 689999999999999999999 9999999999999976632 1345666643 33389999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+..++|++.||.||+.||++.
T Consensus 89 ~~AV~A~k~GA~Dfl~KP~~~ 109 (464)
T COG2204 89 DTAVEALRLGAFDFLEKPFDL 109 (464)
T ss_pred HHHHHHHhcCcceeeeCCCCH
Confidence 999999999999999999973
No 4
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.54 E-value=6.8e-14 Score=80.15 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=75.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
||||......|++.+++.||. +..+.+.++++..++...+. +-+|+++ +++...++.||++|++.+-
T Consensus 15 vdDD~~f~~~LaRa~e~RGf~-v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sI 93 (182)
T COG4567 15 VDDDTPFLRTLARAMERRGFA-VVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASI 93 (182)
T ss_pred ecCChHHHHHHHHHHhccCce-eEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEecchHH
Confidence 689999999999999999999 99999999999998754431 2267776 5555599999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
...++|.+.||.+||.||-+
T Consensus 94 ATAV~AvKlGA~~YLaKPAd 113 (182)
T COG4567 94 ATAVEAVKLGACDYLAKPAD 113 (182)
T ss_pred HHHHHHHHhhhhhhcCCCCC
Confidence 99999999999999999976
No 5
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.54 E-value=1.2e-13 Score=75.55 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=73.4
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+..+|+..|+ . +..+.++.++++.+....++ +..++++ +....+.+|+|++|+..+
T Consensus 4 vd~~~~~~~~l~~~l~~~~~~~-v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 4 VDDDPEIRELLEKLLERAGYEE-VTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp EESSHHHHHHHHHHHHHTTEEE-EEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred EECCHHHHHHHHHHHHhCCCCE-EEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 57899999999999999999 7 99999999999999655432 2344554 333338999999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....+++++|+++|+.||++.
T Consensus 83 ~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 83 SDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp HHHHHHHHHTTESEEEESSSSH
T ss_pred HHHHHHHHHCCCCEEEECCCCH
Confidence 9999999999999999999863
No 6
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-13 Score=91.13 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHHHHHh--hcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLT--ISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~--~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
|||++..|+.|+.++. +.|++.|-.|.||.+|++.++..+++ .+.|+|++ ....+.+.+|++|+..
T Consensus 7 VDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~IILSGy~ 86 (475)
T COG4753 7 VDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFIILSGYD 86 (475)
T ss_pred ecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHhCCCceEEEEeccc
Confidence 6999999999999996 56787789999999999999765542 34667763 3444999999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+-+.+.+|+++|+.|||+||++
T Consensus 87 eFeYak~Am~lGV~dYLLKP~~ 108 (475)
T COG4753 87 EFEYAKKAMKLGVKDYLLKPVD 108 (475)
T ss_pred hhHHHHHHHhcCchhheeCcCC
Confidence 9999999999999999999987
No 7
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=5.6e-13 Score=85.17 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh------cCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS------REIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~------~~~pii~lt~~ 65 (93)
|||.+..+..+..+|+..+|+ +..+.+|++|++.......+ .+.|.+++..+. ..+|++++|+.
T Consensus 20 vDD~~~~~~~~~~lL~~~~y~-v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~ 98 (360)
T COG3437 20 VDDEPDNLEALRQLLRMIGYR-VIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAY 98 (360)
T ss_pred ecCchhHHHHHHHHHHhcccc-eeeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEeec
Confidence 689999999999999999999 99999999999998654321 234555533222 78999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchhh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWAR 90 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~~ 90 (93)
.+.+...++++.|+++|+.||++..
T Consensus 99 ~d~~~~~~~~~~g~~dyl~KP~~~~ 123 (360)
T COG3437 99 ADSEDRQRALEAGADDYLSKPISPK 123 (360)
T ss_pred CChHHHHHHHHhhHHHHhcCCCCHH
Confidence 9999999999999999999999844
No 8
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=2.4e-12 Score=77.43 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh---cCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS---REIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~---~~~pii~lt~~~~ 67 (93)
||||+...+.-+.+++. .||+.|-.+.++++|...++...++ +-.|++++.... ..+-||++|+.++
T Consensus 6 iEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d 85 (224)
T COG4565 6 IEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASD 85 (224)
T ss_pred EcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccch
Confidence 68999999999999986 5787788999999999999754431 235666644433 7778999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.+.+++.+|+.|||.|||.
T Consensus 86 ~~tI~~alr~Gv~DYLiKPf~ 106 (224)
T COG4565 86 METIKEALRYGVVDYLIKPFT 106 (224)
T ss_pred HHHHHHHHhcCchhheeccee
Confidence 999999999999999999996
No 9
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-11 Score=81.55 Aligned_cols=87 Identities=23% Similarity=0.306 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
|||+...+..+..+|...||. +..+.++++|+..+.+..+. .+.|+++...+. ..+|||++++..
T Consensus 138 vdD~~~~~~~l~~~L~~~g~~-v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~ 216 (435)
T COG3706 138 VDDDATQRERLRRILQVEGFR-VVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKD 216 (435)
T ss_pred EcCcHHHHHHHHHHHHhccce-eeeecCHHHHHHHHhcCCCcEEEEecCCCccCHHHHHHHHhcccccccccEEEEeccc
Confidence 578889999999999999999 99999999999999755321 234555433222 799999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....+|++.|++||++||+.
T Consensus 217 d~~~~~~Af~~G~~Dyi~kPi~ 238 (435)
T COG3706 217 DDELVVRAFELGVNDYITKPIE 238 (435)
T ss_pred chHHHHHHHHcCCcceEecCCC
Confidence 9999999999999999999986
No 10
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.28 E-value=8.6e-11 Score=71.12 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=70.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..|++++ ....+.+|+|++|+..+.
T Consensus 6 v~d~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~ 84 (227)
T PRK09836 6 VEDEKKTGEYLTKGLTEAGFV-VDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTI 84 (227)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 478889999999999988998 99999999999877543321 22344443 222368999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 85 ~~~~~~~~~Ga~~~l~kp~~~ 105 (227)
T PRK09836 85 EHRVKGLELGADDYLVKPFAF 105 (227)
T ss_pred HHHHHHHhCCCCEEEeCCCCH
Confidence 999999999999999999873
No 11
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.27 E-value=9.2e-11 Score=70.82 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..|++++. ...+.+|+|++|+..+.
T Consensus 6 v~d~~~~~~~l~~~L~~~g~~-v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~ 84 (223)
T PRK10816 6 VEDNALLRHHLKVQLQDAGHQ-VDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESW 84 (223)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 478888999999999999999 99999999999887644321 223444432 22368999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....+++.|+++|+.||++.
T Consensus 85 ~~~~~~l~~Ga~d~l~kp~~~ 105 (223)
T PRK10816 85 QDKVEVLSAGADDYVTKPFHI 105 (223)
T ss_pred HHHHHHHHcCCCeeEeCCCCH
Confidence 999999999999999999863
No 12
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.26 E-value=1.4e-10 Score=70.08 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+||++..+..+...|+..|+. +..+.++.+++..+....++ +..|++++... ...+|+|++|+..+..
T Consensus 7 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~ 85 (225)
T PRK10529 7 VEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEES 85 (225)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHH
Confidence 578899999999999988998 99999999998877543321 22344442222 2678999999999999
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||+..
T Consensus 86 ~~~~~~~~ga~~~l~kP~~~ 105 (225)
T PRK10529 86 DKIAALDAGADDYLSKPFGI 105 (225)
T ss_pred HHHHHHHcCCCEEEeCCCCH
Confidence 99999999999999999873
No 13
>PRK11173 two-component response regulator; Provisional
Probab=99.25 E-value=1.5e-10 Score=70.67 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..|++++... ...+|+|++|+..+..
T Consensus 9 v~dd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt~~~~~~ 87 (237)
T PRK11173 9 VEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEV 87 (237)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 478899999999999989999 99999999999888644321 22344442222 1678999999999988
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
....+++.|+++|+.||++
T Consensus 88 ~~~~~~~~ga~d~l~kP~~ 106 (237)
T PRK11173 88 DKILGLEIGADDYITKPFN 106 (237)
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 8889999999999999986
No 14
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.25 E-value=1.8e-10 Score=69.38 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=69.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
++|++.....+...|+..|+. +..+.++.+++..+....++ ++.|++++... ...+|+|++++..+..
T Consensus 8 v~d~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~ 86 (221)
T PRK10766 8 VEDEPVTRARLQGYFEQEGYT-VSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVTGRTDSI 86 (221)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHH
Confidence 478888899999999988999 99999999999887644321 22344442222 1678999999999998
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||+..
T Consensus 87 ~~~~~l~~Ga~d~l~kP~~~ 106 (221)
T PRK10766 87 DRIVGLEMGADDYVTKPLEL 106 (221)
T ss_pred HHHHHHHcCCCcEEeCCCCH
Confidence 88899999999999999873
No 15
>PLN03029 type-a response regulator protein; Provisional
Probab=99.24 E-value=1.6e-10 Score=70.65 Aligned_cols=87 Identities=45% Similarity=0.647 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-------------------c----------CCCchHHHh
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE-------------------Q----------SANGFDVRT 51 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-------------------~----------~~~~~d~l~ 51 (93)
|+|+...+..+..+|+..||. +..+.++.+++..+..... . .+.|++++.
T Consensus 14 Vdd~~~~~~~l~~~L~~~g~~-v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G~e~l~ 92 (222)
T PLN03029 14 VDDSLIDRKLIEKLLKTSSYQ-VTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTGYDLLK 92 (222)
T ss_pred EeCCHHHHHHHHHHHHHcCce-EEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCHHHHHH
Confidence 578899999999999999999 9999999999998742210 1 223444432
Q ss_pred hhh-----cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 52 IYS-----REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 52 ~~~-----~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+. ..+|+|++|+........++++.|+++|+.||+.
T Consensus 93 ~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~ 134 (222)
T PLN03029 93 KIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQ 134 (222)
T ss_pred HHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCC
Confidence 221 5789999999999999999999999999999986
No 16
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.22 E-value=1.5e-10 Score=82.67 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+..+|++.||. +..+.++.+|++.+....++ .++|+++ ++...+.+|||++|+....
T Consensus 807 VdD~~~~~~~l~~~L~~~G~~-v~~a~~g~eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~lTa~~~~ 885 (924)
T PRK10841 807 VDDHPINRRLLADQLGSLGYQ-CKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIGVTANALA 885 (924)
T ss_pred ECCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 589999999999999999999 99999999999998654432 2345555 3333478999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
+...++++.|+++|+.||++
T Consensus 886 ~~~~~~~~aG~d~~L~KPv~ 905 (924)
T PRK10841 886 EEKQRCLEAGMDSCLSKPVT 905 (924)
T ss_pred HHHHHHHHCCCCEEEeCCCC
Confidence 99999999999999999997
No 17
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.21 E-value=3e-10 Score=69.25 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..||. +..+.++.+++..+....++ ...|++++ ....+.+|+|++++..+.
T Consensus 11 v~d~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~ 89 (239)
T PRK09468 11 VDDDMRLRALLERYLTEQGFQ-VRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEE 89 (239)
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcH
Confidence 478888999999999999999 99999999999887643321 22344443 222268899999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....+++.|+++|+.||+.
T Consensus 90 ~~~~~~l~~Ga~~~l~kP~~ 109 (239)
T PRK09468 90 VDRIVGLEIGADDYLPKPFN 109 (239)
T ss_pred HHHHHHHhcCCCeEEECCCC
Confidence 88889999999999999987
No 18
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.21 E-value=3.5e-10 Score=68.81 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..++.+|...+ ++.+..+.++.++++.+....++ +++|+++ +....++++++++|...+
T Consensus 6 vDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~ 85 (211)
T COG2197 6 VDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDD 85 (211)
T ss_pred ECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCC
Confidence 5899999999999998665 66677888899999987544432 2456665 343349999999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+....++++.||++|+.|....
T Consensus 86 ~~~v~~al~~Ga~Gyl~K~~~~ 107 (211)
T COG2197 86 PAYVIRALRAGADGYLLKDASP 107 (211)
T ss_pred HHHHHHHHHcCCCEEEeCCCCH
Confidence 9999999999999999998653
No 19
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.20 E-value=4.1e-11 Score=84.27 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccC----------CCchHH---Hhhh-hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQS----------ANGFDV---RTIY-SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~----------~~~~d~---l~~~-~~~~pii~lt~~~ 66 (93)
|||+...+.....+|+++|.. +..+.++.+|++.++..++++ ++|+++ ++.. ..++|||++|+..
T Consensus 672 vddn~vn~~Va~~~l~~~g~~-~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~ 750 (786)
T KOG0519|consen 672 VDDNPVNRKVATGMLKKLGAE-VTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALTADA 750 (786)
T ss_pred EecccchHHHHHHHHHHhCCe-eEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEEEEecCC
Confidence 588899999999999999999 888889999999998444432 234443 2222 1699999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+....++++.|.|+||.||+.-
T Consensus 751 ~~~~~~~c~~~Gmd~yl~KP~~~ 773 (786)
T KOG0519|consen 751 DPSTEEECLEVGMDGYLSKPFTL 773 (786)
T ss_pred cHHHHHHHHHhCCceEEcccccH
Confidence 99999999999999999999973
No 20
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.20 E-value=3.8e-10 Score=68.90 Aligned_cols=88 Identities=8% Similarity=-0.014 Sum_probs=69.0
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh---hcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY---SREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~---~~~~pii~lt~~~~ 67 (93)
+||++..+..+...|+. .++..+..+.++.++++.+....++ ++.|++++... .+..|||++|+..+
T Consensus 10 vdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~ 89 (225)
T PRK10046 10 VEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASD 89 (225)
T ss_pred ECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 58899999999999986 4674378899999999998644321 23455543322 25678999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....++++.|+++|+.||++
T Consensus 90 ~~~~~~al~~Ga~~yl~Kp~~ 110 (225)
T PRK10046 90 METVSEAVRCGVFDYLIKPIA 110 (225)
T ss_pred HHHHHHHHHcCccEEEECCcC
Confidence 999999999999999999986
No 21
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.19 E-value=4.8e-10 Score=68.49 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ ...|++++..+ ....|+|++++..+..
T Consensus 7 vedd~~~~~~l~~~L~~~g~~-v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~~~~ 85 (240)
T PRK10701 7 VEDDAEVGSLIAAYLAKHDID-VTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLDSDM 85 (240)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCHH
Confidence 578899999999999999999 99999999999988644321 23445542222 2567999999988888
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
....+++.|+++|+.||+.
T Consensus 86 ~~~~~~~~Ga~d~l~kP~~ 104 (240)
T PRK10701 86 NHILALEMGACDYILKTTP 104 (240)
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 8889999999999999986
No 22
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.19 E-value=5.4e-10 Score=67.69 Aligned_cols=87 Identities=21% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
+||++..+..+...|+..|+. +..+.++.+++..+....++ +..+++++..+. +.+|+|++|+..
T Consensus 8 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~ 86 (229)
T PRK10161 8 VEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARG 86 (229)
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCC
Confidence 578889999999999988999 88999999999887644321 123444432221 578999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||++
T Consensus 87 ~~~~~~~~~~~Ga~~~l~kp~~ 108 (229)
T PRK10161 87 EEEDRVRGLETGADDYITKPFS 108 (229)
T ss_pred CHHHHHHHHHcCCCEEEECCCC
Confidence 9999999999999999999986
No 23
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.18 E-value=3e-10 Score=80.41 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=72.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
|||++..+..++.+|+..|+. +..+.++.+|++.+....++ .++|++++..+ .+.+|||++|+..
T Consensus 673 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~ 751 (919)
T PRK11107 673 VDDNPANLKLIGALLEEQVEH-VVLCDSGHQAVEQAKQRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHA 751 (919)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCC
Confidence 589999999999999999999 99999999999998654432 23455542222 2679999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
......++++.|+++|+.||+..
T Consensus 752 ~~~~~~~~~~~G~~~~l~KP~~~ 774 (919)
T PRK11107 752 MAGERERLLSAGMDDYLAKPIDE 774 (919)
T ss_pred CHHHHHHHHHcCCCeEeeCCCCH
Confidence 99999999999999999999973
No 24
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.18 E-value=6.5e-10 Score=61.97 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=69.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHH-HHHHHhccCc-cc---------CCCchHHHhhhh---cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGR-RALQFLGLDE-EQ---------SANGFDVRTIYS---REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~-~a~~~~~~~~-~~---------~~~~~d~l~~~~---~~~pii~lt~~~ 66 (93)
+||++..+..+...|...|+. +..+.++. +|+..++... .+ .++|++++..+. +.+|++++|+..
T Consensus 11 vdD~~~~~~~~~~~l~~~g~~-v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv~~t~~~ 89 (130)
T COG0784 11 VDDEPVNRRLLKRLLEDLGYE-VVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVILLTAYA 89 (130)
T ss_pred EcCCHHHHHHHHHHHHHcCCe-EEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEcCc
Confidence 589999999999999999999 99999995 9999997542 21 234555544333 578888899988
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.......+++.|+++|+.||+.
T Consensus 90 ~~~~~~~~~~~g~~~~l~kP~~ 111 (130)
T COG0784 90 DEADRERALAAGADDYLTKPIF 111 (130)
T ss_pred CHHHHHHHHHcCCCeEEcCCCC
Confidence 8877677889999999999964
No 25
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.18 E-value=5.9e-10 Score=66.83 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|+..++. +..+.++.+++..+....++ +..|++++ ....+.+|+|++|+..+.
T Consensus 6 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~ 84 (219)
T PRK10336 6 IEDDMLIGDGIKTGLSKMGFS-VDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDAL 84 (219)
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCH
Confidence 578889999999999988998 88999999999887543321 22344442 232378899999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 85 ~~~~~~~~~ga~~~i~kp~~ 104 (219)
T PRK10336 85 AERVEGLRLGADDYLCKPFA 104 (219)
T ss_pred HHHHHHHhCCCCeEEECCCC
Confidence 88889999999999999986
No 26
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.18 E-value=5.6e-10 Score=68.41 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCC-CCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPE-IIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~-~~~ 68 (93)
++|++..+..+...|+..||. +..+.++.+++..+....++ +.+|++++.... ..+|++++|+. .+.
T Consensus 7 ved~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~~~~~~ 85 (241)
T PRK13856 7 IDDDVAMRHLIVEYLTIHAFK-VTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISGDRLEE 85 (241)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCcH
Confidence 578899999999999988999 99999999999887544321 234455433221 67899999985 466
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 86 ~~~~~~l~~Ga~~yl~kP~~ 105 (241)
T PRK13856 86 ADKVVALELGATDFIAKPFG 105 (241)
T ss_pred HHHHHHHhcCcCeEEeCCCC
Confidence 66778999999999999997
No 27
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.18 E-value=5.6e-10 Score=67.48 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------CC-----CchHHHhhh---hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------SA-----NGFDVRTIY---SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~~-----~~~d~l~~~---~~~~pii~lt~~~ 66 (93)
+||+...+..+...|+..||. +..+.++.+++..+....++ .+ .|++++..+ .+.+|+|++|+..
T Consensus 6 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~ 84 (227)
T TIGR03787 6 VEDEAAIRENYADALKRQGYQ-VTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARD 84 (227)
T ss_pred EeCCHHHHHHHHHHHHHCCcE-EEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 578889999999999988998 88899999999887543321 11 244543222 2678999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+......+++.|+++|+.||+.
T Consensus 85 ~~~~~~~~~~~Ga~~~l~kp~~ 106 (227)
T TIGR03787 85 SDFDTVSGLRLGADDYLTKDIS 106 (227)
T ss_pred CHHHHHHHHhcCCCEEEECCCC
Confidence 9999999999999999999986
No 28
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.17 E-value=6e-10 Score=66.88 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhh---hhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTI---YSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~---~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..|++++.. ..+.+|+|++|+..+.
T Consensus 6 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~ 84 (222)
T PRK10643 6 VEDDTLLLQGLILALQTEGYA-CDCASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILTARDTL 84 (222)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCH
Confidence 578889999999999988998 99999999999887543321 2234444322 2267899999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 85 ~~~~~~~~~ga~~~l~kp~~ 104 (222)
T PRK10643 85 EDRVAGLDVGADDYLVKPFA 104 (222)
T ss_pred HHHHHHHhcCCCeEEeCCCC
Confidence 99999999999999999986
No 29
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.16 E-value=4.9e-10 Score=79.42 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-------hcCCcEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-------SREIPVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-------~~~~pii~lt~ 64 (93)
|||++..+..+..+|+..|+. +..+.++.+|++.+....++ .++|++++..+ .+.+|||++|+
T Consensus 696 vdd~~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~ 774 (921)
T PRK15347 696 VDDVETNRDIIGMMLVELGQQ-VTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTA 774 (921)
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeC
Confidence 589999999999999999999 99999999999998654431 23455553221 26789999999
Q ss_pred CCCHHHHHHHHHcCCcceeeccch
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
........++++.|+++|+.||+.
T Consensus 775 ~~~~~~~~~~~~~G~~~~l~KP~~ 798 (921)
T PRK15347 775 NAAPEEIHRCKKAGMNHYLTKPVT 798 (921)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCC
Confidence 999999999999999999999986
No 30
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.15 E-value=9.4e-10 Score=65.85 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhh---hhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTI---YSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~---~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..+++++.. ..+.+|+|++++..+.
T Consensus 4 idd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~ 82 (218)
T TIGR01387 4 VEDEQKTAEYLQQGLSESGYV-VDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSV 82 (218)
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCH
Confidence 478888999999999988998 99999999999887544321 2234444322 2378899999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 83 ~~~~~~~~~Ga~~~l~kp~~ 102 (218)
T TIGR01387 83 ADKVKGLDLGADDYLVKPFS 102 (218)
T ss_pred HHHHHHHHcCCCeEEECCCC
Confidence 99999999999999999986
No 31
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.14 E-value=9.7e-10 Score=66.19 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|...++. +..+.++.+++..+....++ +..+++++ ....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 87 (228)
T PRK11083 9 VEDEQAIADTLVYALQSEGFT-VEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLTARSDE 87 (228)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEEcCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcCCcH
Confidence 478888999999999888998 88999999999887543321 22344442 222378999999999888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....+++.|+++|+.||+..
T Consensus 88 ~~~~~a~~~Ga~~~l~kp~~~ 108 (228)
T PRK11083 88 VDRLVGLEIGADDYVAKPFSP 108 (228)
T ss_pred HHHHHHhhcCCCeEEECCCCH
Confidence 888899999999999999863
No 32
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.13 E-value=1.2e-09 Score=65.70 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..+...|+..++. +..+.++.+++..+....++ +..|++++... .+.+|++++|+..
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 86 (226)
T TIGR02154 8 VEDEPAIRELIAYNLEKAGYD-VVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARG 86 (226)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCC
Confidence 478889999999999888888 88999999999888644321 22344443222 1578999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||+..
T Consensus 87 ~~~~~~~~~~~Ga~~~l~kp~~~ 109 (226)
T TIGR02154 87 EEEDRVRGLETGADDYITKPFSP 109 (226)
T ss_pred CHHHHHHHHhcCcceEEeCCCCH
Confidence 98888899999999999999863
No 33
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.13 E-value=1.4e-09 Score=65.50 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
++|++..+..+...|+..|+. +..+.++.+++..+....++ +..+++++... ...+|++++++..+..
T Consensus 6 v~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~ 84 (223)
T PRK11517 6 IEDNQRTQEWVTQGLSEAGYV-IDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVD 84 (223)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHH
Confidence 478888999999999988988 99999999999887543321 22344443222 1578999999999999
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||+.
T Consensus 85 ~~~~a~~~Ga~~~l~kp~~ 103 (223)
T PRK11517 85 DRVRGLDSGANDYLVKPFS 103 (223)
T ss_pred HHHHHHhcCCCEEEECCCC
Confidence 9999999999999999986
No 34
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.12 E-value=8.3e-10 Score=78.67 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcC---CcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSRE---IPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~---~pii~lt~~ 65 (93)
|||++..+..+..+|+..||. +..+.++.+|++.+....++ ++.|++++ +...+. +|||++|+.
T Consensus 708 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~ 786 (968)
T TIGR02956 708 VEDNEVNQMVAQGFLTRLGHK-VTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAH 786 (968)
T ss_pred EcCcHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECC
Confidence 589999999999999999999 99999999999998654332 23444442 222233 899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.......++++.|+++|+.||+.
T Consensus 787 ~~~~~~~~~~~~G~~~~l~KP~~ 809 (968)
T TIGR02956 787 VFNEDVAQYLAAGFDGFLAKPVV 809 (968)
T ss_pred CCHHHHHHHHHCCCCEEEeCCCC
Confidence 99999999999999999999997
No 35
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.10 E-value=2e-09 Score=65.16 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~~ 69 (93)
+||++..+..+...|+..|+. +..+.++.+++..+.. .++ +..|++++..+. ..+|+|++|+..+..
T Consensus 7 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~-~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~ 84 (232)
T PRK10955 7 VDDDRELTSLLKELLEMEGFN-VIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLTARGSEL 84 (232)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHhhc-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEECCCCHH
Confidence 578999999999999988898 8899999999988753 221 223444422221 338999999998888
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||++
T Consensus 85 ~~~~~~~~ga~~~l~kp~~ 103 (232)
T PRK10955 85 DRVLGLELGADDYLPKPFN 103 (232)
T ss_pred HHHHHHHcCCCEEEcCCCC
Confidence 8889999999999999986
No 36
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.10 E-value=1.3e-09 Score=72.26 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------C--------CCchHHH---hhhhcCCcEEEEc
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------S--------ANGFDVR---TIYSREIPVVIMS 63 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~--------~~~~d~l---~~~~~~~pii~lt 63 (93)
+||++..+..+...+ .+|. +..+.++.+|++.+....++ . ++|++++ ....+.+|||++|
T Consensus 4 vddd~~~~~~l~~~l--~~~~-v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt 80 (445)
T TIGR02915 4 VEDDLGLQKQLKWSF--ADYE-LAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVIT 80 (445)
T ss_pred EECCHHHHHHHHHHh--CCCe-EEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 578888888888888 6898 99999999999998644321 1 2344443 2333789999999
Q ss_pred CCCCHHHHHHHHHcCCcceeeccchh
Q 042991 64 PEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 64 ~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+..+.+...++++.|+++|+.||++.
T Consensus 81 ~~~~~~~~~~a~~~Ga~dyl~KP~~~ 106 (445)
T TIGR02915 81 GNDDRENAVKAIGLGAYDFYQKPIDP 106 (445)
T ss_pred cCCCHHHHHHHHHCCccEEEeCCCCH
Confidence 99999999999999999999999873
No 37
>PRK15115 response regulator GlrR; Provisional
Probab=99.09 E-value=1e-09 Score=72.83 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+...|+..||. +..+.++.+|+..+....++ ++.|++++. ...+.+|+|++|+..+.
T Consensus 11 Vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~eal~~l~~~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvlt~~~~~ 89 (444)
T PRK15115 11 VDDDPGLLKLLGMRLTSEGYS-VVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSI 89 (444)
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCH
Confidence 578999999999999999998 99999999999988644321 234455432 22378999999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 90 ~~~~~a~~~Ga~~~l~KP~~ 109 (444)
T PRK15115 90 PDAVAATQQGVFSFLTKPVD 109 (444)
T ss_pred HHHHHHHhcChhhhccCCCC
Confidence 88999999999999999986
No 38
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.09 E-value=2.4e-09 Score=65.08 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=68.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
++|++.....+...|...++. +..+.++.+++..+....++ +..|+++ +... +.+|+|++|+..+.
T Consensus 12 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~ 89 (240)
T CHL00148 12 VDDEAYIRKILETRLSIIGYE-VITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIMLTALGDV 89 (240)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEECCCCH
Confidence 478888899999999988888 88899999999887543321 2234444 2222 68999999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....+++.|+++|+.||++
T Consensus 90 ~~~~~~~~~Ga~~~l~kp~~ 109 (240)
T CHL00148 90 SDRITGLELGADDYVVKPFS 109 (240)
T ss_pred HhHHHHHHCCCCEEEeCCCC
Confidence 88889999999999999986
No 39
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.09 E-value=1.5e-09 Score=72.50 Aligned_cols=87 Identities=21% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+...|+..||. +..+.++.+++..+....++ ++.|++++ ....+.+|+|++|+..+.
T Consensus 9 Vdd~~~~~~~L~~~L~~~g~~-v~~~~s~~~al~~l~~~~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvlt~~~~~ 87 (469)
T PRK10923 9 VDDDSSIRWVLERALAGAGLT-CTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDL 87 (469)
T ss_pred EECCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhcCCCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCH
Confidence 578999999999999999999 99999999999998644321 23445542 333378899999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....+++.|+.+|+.||+.
T Consensus 88 ~~~~~a~~~Ga~~~l~KP~~ 107 (469)
T PRK10923 88 DAAVSAYQQGAFDYLPKPFD 107 (469)
T ss_pred HHHHHHHhcCcceEEecCCc
Confidence 88899999999999999986
No 40
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.09 E-value=1.4e-09 Score=77.20 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc----------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ----------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~----------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+..+|+..||. +..+.++.+|+..+.....+ +++|+++ +....+.+|+|++|+...
T Consensus 687 vdD~~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~ 765 (914)
T PRK11466 687 IEDNPLTQRITAEMLNTSGAQ-VVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVI 765 (914)
T ss_pred EeCCHHHHHHHHHHHHhcCCc-eEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCc
Confidence 588999999999999999999 99999999999987532222 2345555 333337899999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....++++.|+++|+.||+.
T Consensus 766 ~~~~~~~~~~g~~~~l~KP~~ 786 (914)
T PRK11466 766 DETLRQRTSSLFRGIIPKPVP 786 (914)
T ss_pred hhhHHHHHhcCcCCEEeCCCC
Confidence 988889999999999999996
No 41
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.08 E-value=1.8e-09 Score=78.61 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+..+|+..|++ +..+.++.+|+..+...+++ +++|++++ ....+.+|+|++|+....
T Consensus 964 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~ 1042 (1197)
T PRK09959 964 ADDHPTNRLLLKRQLNLLGYD-VDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQA 1042 (1197)
T ss_pred cCCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 689999999999999999999 99999999999998644321 23455543 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||+..
T Consensus 1043 ~~~~~~~~~G~~~~l~KP~~~ 1063 (1197)
T PRK09959 1043 NEREKGLSCGMNLCLFKPLTL 1063 (1197)
T ss_pred HHHHHHHHCCCCEEEeCCCCH
Confidence 999999999999999999863
No 42
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.08 E-value=1.8e-09 Score=71.80 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
++|++..+..+...|+..||. +..+.++.+++..+....++ ++.|++++ ....+.+|+|++|+..+.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI~lt~~~~~ 88 (457)
T PRK11361 10 VDDEDNVRRMLSTAFALQGFE-THCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEV 88 (457)
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 578889999999999988999 99999999999988644321 22344442 223378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 89 ~~~~~a~~~Ga~d~l~KP~~ 108 (457)
T PRK11361 89 ETAVEALRCGAFDYVIKPFD 108 (457)
T ss_pred HHHHHHHHCCccEEEecccC
Confidence 99999999999999999986
No 43
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.07 E-value=4e-09 Score=62.76 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=68.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~ 67 (93)
++|++..+..+...|+..|+. +. .+.++.+++..+....++ +..|++++. ...+..|+|++++..+
T Consensus 6 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 84 (204)
T PRK09958 6 IDDHPLAIAAIRNLLIKNDIE-ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKND 84 (204)
T ss_pred ECCcHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 578888999999999888888 76 699999999888644321 223444432 2226789999999989
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....++++.|+++|+.||++
T Consensus 85 ~~~~~~~~~~ga~~~i~kp~~ 105 (204)
T PRK09958 85 HFYGKHCADAGANGFVSKKEG 105 (204)
T ss_pred HHHHHHHHHCCCCEEEecCCC
Confidence 888889999999999999986
No 44
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.04 E-value=5.9e-09 Score=61.66 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhhcCCcEEEEcCCCCHHH
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYSREIPVVIMSPEIILVR 70 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~~~~pii~lt~~~~~~~ 70 (93)
++|++..+..+...|+.. ++..+..+.++.+++..+....++ +..|++++....+.+|+++++...+...
T Consensus 7 vd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~ 86 (196)
T PRK10360 7 IDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPAL 86 (196)
T ss_pred ECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHH
Confidence 578888999999999754 554356889999999988644321 1223333444446789999999999988
Q ss_pred HHHHHHcCCcceeeccchh
Q 042991 71 IDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 71 ~~~~~~~ga~d~l~kP~~~ 89 (93)
..++++.|+++|+.||+..
T Consensus 87 ~~~~~~~ga~~~i~kp~~~ 105 (196)
T PRK10360 87 VEQALNAGARGFLSKRCSP 105 (196)
T ss_pred HHHHHHcCCcEEEECCCCH
Confidence 8899999999999999874
No 45
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.03 E-value=6.7e-09 Score=62.89 Aligned_cols=88 Identities=9% Similarity=-0.060 Sum_probs=67.6
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccCccc---------C---CCchHHHh---hhhcCCcEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLDEEQ---------S---ANGFDVRT---IYSREIPVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~~~~---------~---~~~~d~l~---~~~~~~pii~lt~ 64 (93)
+||++..+..++.+|+..++ ..+..+.++.+++..+....++ + ..|++++. ...+.+|||++|.
T Consensus 9 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~ 88 (216)
T PRK10840 9 ADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTM 88 (216)
T ss_pred ECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEe
Confidence 57889999999999987654 3367789999999887543321 1 13455432 2237889999999
Q ss_pred CCCHHHHHHHHHcCCcceeeccch
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
..+......+++.|+++|+.||..
T Consensus 89 ~~~~~~~~~a~~~Ga~~yl~K~~~ 112 (216)
T PRK10840 89 NNNPAILSAVLDLDIEGIVLKQGA 112 (216)
T ss_pred cCCHHHHHHHHHCCCeEEEECCCC
Confidence 999888889999999999999986
No 46
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.03 E-value=3.6e-09 Score=70.51 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|+..||. +..+.++.+|+..+....++ ++.|+++ +....+.+|+|++|+..+.
T Consensus 4 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~~~~ 82 (463)
T TIGR01818 4 VDDDRSIRWVLEKALSRAGYE-VRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAHSDL 82 (463)
T ss_pred EECCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCCCCH
Confidence 578899999999999989999 99999999999888644321 2234444 2233378899999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 83 ~~~~~a~~~Ga~~~l~KP~~ 102 (463)
T TIGR01818 83 DTAVAAYQRGAFEYLPKPFD 102 (463)
T ss_pred HHHHHHHHcCcceeecCCCC
Confidence 88899999999999999986
No 47
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.02 E-value=2.2e-09 Score=71.03 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|+..|+. +..+.++.+++..+....++ ++.|+++ +....+.+|+|++|+..+.
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi~lt~~~~~ 89 (441)
T PRK10365 11 VDDDISHCTILQALLRGWGYN-VALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSV 89 (441)
T ss_pred EECCHHHHHHHHHHHHHCCCe-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCH
Confidence 578899999999999999999 99999999999888644321 2345554 3333378999999999988
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+.+|+.||+.
T Consensus 90 ~~~~~a~~~ga~~~l~Kp~~ 109 (441)
T PRK10365 90 ETAVEALKTGALDYLIKPLD 109 (441)
T ss_pred HHHHHHHHhhhHHHhcCCCC
Confidence 89999999999999999986
No 48
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.02 E-value=8.5e-09 Score=63.43 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhcc--Cccc---------CCCchHHHh---hhhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGL--DEEQ---------SANGFDVRT---IYSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~--~~~~---------~~~~~d~l~---~~~~~~pii~lt~~ 65 (93)
+||++..+..+..+|.. .++..+..+.++.+++..+.. ..++ +++|++++. ...+.+|+|++|+.
T Consensus 7 vdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~~ 86 (239)
T PRK10430 7 VDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISSA 86 (239)
T ss_pred EcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEEEEECC
Confidence 58899999999999975 356534578899999888742 2211 234555533 33378999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~al~~Ga~~yl~Kp~~~ 110 (239)
T PRK10430 87 ADAATIKDSLHYGVVDYLIKPFQA 110 (239)
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCH
Confidence 999999999999999999999863
No 49
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=98.98 E-value=1.2e-08 Score=61.94 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+++++.....+...|...++. +..+.++.+++..+....++ +..+++++... ...+|++++++.....
T Consensus 16 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~~~~~~~ 94 (240)
T PRK10710 16 VEDEPKLGQLLIDYLQAASYA-TTLLSHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEI 94 (240)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEcCCCHH
Confidence 478888999999999988998 88999999999888644321 22344442222 2678999999988888
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
....+++.|+++|+.||+.
T Consensus 95 ~~~~~~~~ga~~~l~kp~~ 113 (240)
T PRK10710 95 DRLLGLEIGADDYICKPYS 113 (240)
T ss_pred HHHHHHhcCCCeEEECCCC
Confidence 8888999999999999986
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.95 E-value=4e-09 Score=69.39 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
+||++..+..+...+.. .+. +..+.++.+|+..+....++ .+.|++++.... +.+|+|++|+..
T Consensus 161 vdd~~~~~~~l~~~l~~-~~~-~~~~~~~~~a~~~~~~~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~ 238 (457)
T PRK09581 161 VDDDVSQAERIANILKE-EFR-VVVVSDPSEALFNAAETNYDLVIVSANFENYDPLRLCSQLRSKERTRYVPILLLVDED 238 (457)
T ss_pred EecccchHHHHHHHHhh-cce-eeeecChHHHHHhcccCCCCEEEecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCC
Confidence 47888889999999964 466 77899999999987543321 224445433221 789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|++||+.||+..
T Consensus 239 ~~~~~~~a~~~Ga~d~l~kp~~~ 261 (457)
T PRK09581 239 DDPRLVKALELGVNDYLMRPIDK 261 (457)
T ss_pred ChHHHHHHHHccchhhhhCCCcH
Confidence 99999999999999999999863
No 51
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.95 E-value=8.2e-09 Score=71.42 Aligned_cols=87 Identities=13% Similarity=-0.076 Sum_probs=69.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+..+|...+|. +..+.++.+++..+....++ ++.|++++ ....+.+|+|++|+..+.
T Consensus 13 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~al~~~~~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~~~~ 91 (665)
T PRK13558 13 VGDDPEAGPVDCDLDEDGRLD-VTQIRDFVAARDRVEAGEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVVPTAGDE 91 (665)
T ss_pred EccCcchHHHHHHHhhccCcc-eEeeCCHHHHHHHhhccCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 578888999999999888998 99999999999987643321 22344443 232378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+.+|+.||..
T Consensus 92 ~~~~~al~~Ga~dyl~k~~~ 111 (665)
T PRK13558 92 AVARRAVDADAAAYVPAVSD 111 (665)
T ss_pred HHHHHHHhcCcceEEeccch
Confidence 99999999999999999965
No 52
>PRK09483 response regulator; Provisional
Probab=98.94 E-value=2.3e-08 Score=60.02 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~ 67 (93)
+|+++..+..+..+|+.. ++..+..+.++.+++..+....++ +..|++++ ....+.+|++++|...+
T Consensus 7 vd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 86 (217)
T PRK09483 7 VDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIMLTVHTE 86 (217)
T ss_pred ECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence 578889999999999864 677234789999999888644321 22344442 23337899999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....+++..|+++|+.||...
T Consensus 87 ~~~~~~~~~~g~~~~l~k~~~~ 108 (217)
T PRK09483 87 NPLPAKVMQAGAAGYLSKGAAP 108 (217)
T ss_pred HHHHHHHHHcCCCEEEeCCCCH
Confidence 8888899999999999999863
No 53
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=98.94 E-value=2.4e-08 Score=59.88 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+++++.....+...++..++. +..+.++.++...+....++ +..+++.+ ....+.+|++++++..+.
T Consensus 6 vd~~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~lt~~~~~ 84 (221)
T PRK15479 6 AEDNRELAHWLEKALVQNGFA-VDCVFDGLAADHLLQSEMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLLTARSAV 84 (221)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 477888888999999888888 88999999998777543321 22334432 222268899999999888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||+..
T Consensus 85 ~~~~~~~~~g~~~~i~kp~~~ 105 (221)
T PRK15479 85 ADRVKGLNVGADDYLPKPFEL 105 (221)
T ss_pred HHHHHHHHcCCCeeEeCCCCH
Confidence 888899999999999999863
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.94 E-value=1.9e-08 Score=66.18 Aligned_cols=87 Identities=24% Similarity=0.255 Sum_probs=68.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
+++++..+..+...|...++. +..+.++.+++..+....+. +..|++++.... +.+|+|++|+..
T Consensus 8 i~~~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~ 86 (457)
T PRK09581 8 VDDIPANVKLLEAKLLAEYYT-VLTASSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALD 86 (457)
T ss_pred EeCCHHHHHHHHHHHHhCCCE-EEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCC
Confidence 478888889999999888899 99999999999998644321 223444433221 468999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||++
T Consensus 87 ~~~~~~~~~~~ga~~~l~kp~~ 108 (457)
T PRK09581 87 DPEDRVRGLEAGADDFLTKPIN 108 (457)
T ss_pred CHHHHHHHHHCCCCEEEECCCC
Confidence 9989999999999999999986
No 55
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.94 E-value=2.4e-09 Score=67.54 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
|||+......|..+|++.+.. +..|++..+|+..+....++ ++.|+|+ +++..+.+|||++|++...
T Consensus 6 VDdd~a~~~~l~~iLs~~~~~-~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh~ey 84 (361)
T COG3947 6 VDDDAAIVKLLSVILSRAGHE-VRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSHAEY 84 (361)
T ss_pred EcchHHHHHHHHHHHHhccch-hhccCCHHHHHHHHHhcCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEEecchhh
Confidence 688899999999999998877 99999999999999754432 2346666 4555699999999987665
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.. .++..-+.||++||+..
T Consensus 85 a~--dsf~~n~~dYl~KPvt~ 103 (361)
T COG3947 85 AD--DSFGMNLDDYLPKPVTP 103 (361)
T ss_pred hh--hhcccchHhhccCCCCH
Confidence 44 35556679999999973
No 56
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.93 E-value=1.5e-08 Score=71.15 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhh--cC-CcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYS--RE-IPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~--~~-~pii~lt~~ 65 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....++ +++|++++ +... .. +|+|++|+.
T Consensus 531 vdD~~~~~~~l~~~L~~~g~~-v~~a~~~~eal~~~~~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~ 609 (779)
T PRK11091 531 VEDIELNVIVARSVLEKLGNS-VDVAMTGKEALEMFDPDEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTAN 609 (779)
T ss_pred EcCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHhhcCCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECC
Confidence 589999999999999999999 99999999999998644321 23455543 2221 34 488988887
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
... ...++++.|+++|+.||+.
T Consensus 610 ~~~-~~~~~~~~G~~~~l~KP~~ 631 (779)
T PRK11091 610 VLK-DKKEYLDAGMDDVLSKPLS 631 (779)
T ss_pred chH-hHHHHHHCCCCEEEECCCC
Confidence 654 4567899999999999986
No 57
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=98.87 E-value=7.1e-08 Score=57.38 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
++|++..+..+...++.. ++. +. .+.++.+++..+....++ ...|++++ ....+.+|+|++|+..
T Consensus 9 v~d~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (210)
T PRK09935 9 MDTHPIIRMSIEVLLQKNSELQ-IVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKS 87 (210)
T ss_pred ECCcHHHHHHHHHHHhhCCCce-EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCC
Confidence 478888889999999865 466 54 688999998887543321 12334432 2222678999999998
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 88 ~~~~~~~~~~~g~~~~l~kp~~ 109 (210)
T PRK09935 88 ECFYAGRAIQAGANGFVSKCND 109 (210)
T ss_pred cHHHHHHHHHcCCCEEEeCCCC
Confidence 8888889999999999999986
No 58
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=98.85 E-value=5.2e-08 Score=60.54 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=66.0
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh---hc--CCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY---SR--EIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~---~~--~~pii~lt~~ 65 (93)
+||++..+..+...|+.. ++..+..+.++.+++..+....++ .+.|++++..+ .. .+|+|++|+.
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~ 87 (262)
T TIGR02875 8 ADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAF 87 (262)
T ss_pred EcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCC
Confidence 578889999999999754 445245789999999988644321 22344442222 12 3899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.......++++.|+++|+.||+..
T Consensus 88 ~~~~~~~~~~~~G~~~~l~KP~~~ 111 (262)
T TIGR02875 88 GQEKITQRAVALGADYYVLKPFDL 111 (262)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCH
Confidence 999888899999999999999863
No 59
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=98.84 E-value=4.5e-08 Score=57.57 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=69.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+++++.....+...|...++. +..+.++.+++..+....+. ...+++.+ ....+.+|++++++..+.
T Consensus 9 v~~~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~ 87 (202)
T PRK09390 9 VDDDEAMRDSLAFLLDSAGFE-VRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDV 87 (202)
T ss_pred EeCCHHHHHHHHHHHHHCCCe-EEEeCCHHHHHHHhccCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 478888889999999888998 88999999998887544321 22344442 222378999999999888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....+++.|+.+|+.||+..
T Consensus 88 ~~~~~~~~~g~~~~l~~p~~~ 108 (202)
T PRK09390 88 PLAVEAMKLGAVDFIEKPFED 108 (202)
T ss_pred HHHHHHHHcChHHHhhCCCCH
Confidence 888899999999999999863
No 60
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.83 E-value=4.3e-08 Score=69.57 Aligned_cols=87 Identities=6% Similarity=-0.037 Sum_probs=69.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCc-cc--------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDE-EQ--------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~--------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|+..||. +..+.++.+++..+.... .+ .+.++++ +....+.+|||++++....
T Consensus 703 Vddd~~~~~~l~~~L~~~G~~-v~~~~s~~~al~~l~~~~~~~DlVll~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~ 781 (828)
T PRK13837 703 VEPDDATLERYEEKLAALGYE-PVGFSTLAAAIAWISKGPERFDLVLVDDRLLDEEQAAAALHAAAPTLPIILGGNSKTM 781 (828)
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHhhCCCCCEEEEeCCCch
Confidence 578999999999999999999 999999999999985322 11 1233443 2233388999999999888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.| ++|+.||++.
T Consensus 782 ~~~~~~~~~G-~d~L~KP~~~ 801 (828)
T PRK13837 782 ALSPDLLASV-AEILAKPISS 801 (828)
T ss_pred hhhhhHhhcc-CcEEeCCCCH
Confidence 8888899999 9999999973
No 61
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=98.80 E-value=9.6e-08 Score=61.64 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHHh-hcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCC-
Q 042991 1 LNDSFVDRKVIERLLT-ISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEII- 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~-~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~- 67 (93)
+||++..+..+..+|+ ..++..+..+.++.++++.+....++ .+.|++++... ...+|++++++...
T Consensus 6 Vdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~~~~~~pvivvs~~~~~ 85 (337)
T PRK12555 6 VNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIMAERPCPILIVTSLTER 85 (337)
T ss_pred EeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEEEeCCCCc
Confidence 5889999999999995 55677234789999999998644321 23444542222 25689999998643
Q ss_pred -HHHHHHHHHcCCcceeeccc
Q 042991 68 -LVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 68 -~~~~~~~~~~ga~d~l~kP~ 87 (93)
.....++++.|+++|+.||+
T Consensus 86 ~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 86 NASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred CHHHHHHHHhcCceEEEECCC
Confidence 45566889999999999998
No 62
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.78 E-value=1.1e-07 Score=57.78 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=57.4
Q ss_pred HHHHHHHHhh---cCCCceEEeCCHHHHHHHhccCccc------------CCCchHHHh---hhhcCCcEEEEcCCCCHH
Q 042991 8 RKVIERLLTI---SSSRDLYCSCSGRRALQFLGLDEEQ------------SANGFDVRT---IYSREIPVVIMSPEIILV 69 (93)
Q Consensus 8 ~~~l~~~l~~---~~~~~v~~~~~~~~a~~~~~~~~~~------------~~~~~d~l~---~~~~~~pii~lt~~~~~~ 69 (93)
|..+..+|+. .++. +..+.++.++++.+....++ +++|++++. ...+.+|||++|+..++.
T Consensus 3 r~gi~~lL~~~~~~~~~-v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 3 SIGIESLFRKFPGNPYK-LHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEA 81 (207)
T ss_pred hHHHHHHHhcCCCCeeE-EEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHH
Confidence 5667778864 3444 67899999999988643321 224455533 333899999999987776
Q ss_pred HHHHHH-HcCCcceeeccchh
Q 042991 70 RIDRYL-EDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~-~~ga~d~l~kP~~~ 89 (93)
...+++ +.||.+|+.||.+.
T Consensus 82 ~~~~~~~~~Ga~gyl~K~~~~ 102 (207)
T PRK11475 82 RLIGSLSPSPLDGVLSKASTL 102 (207)
T ss_pred HHHHHHHHcCCeEEEecCCCH
Confidence 666655 79999999999863
No 63
>PRK14084 two-component response regulator; Provisional
Probab=98.78 E-value=9.3e-08 Score=58.79 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+..+++..+ +..+..+.++.+++..+....++ ++.|+++ +....+..++|++|+...
T Consensus 6 vdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI~~t~~~~ 85 (246)
T PRK14084 6 VDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDINLMDESGIELAAKIQKMKEPPAIIFATAHDQ 85 (246)
T ss_pred ECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEecChH
Confidence 5788999999999998755 43377899999999887543321 2345555 333335667888887643
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+.+|+.||+.
T Consensus 86 --~~~~~~~~~~~~yl~KP~~ 104 (246)
T PRK14084 86 --FAVKAFELNATDYILKPFE 104 (246)
T ss_pred --HHHHHHhcCCcEEEECCCC
Confidence 4567899999999999986
No 64
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=98.70 E-value=2.9e-08 Score=59.17 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=62.7
Q ss_pred CCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCCCchHH----------Hhhh--hcCCcEEEEcCCCCHH
Q 042991 2 NDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSANGFDV----------RTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~~~d~----------l~~~--~~~~pii~lt~~~~~~ 69 (93)
+|.+..+-.+...|...||+.|..+.++..+.......+ +++..+|+ +.-. ....|||++|+++++.
T Consensus 12 ~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~-pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~ 90 (194)
T COG3707 12 DDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ-PDVVILDIEMPRRDIIEALLLASENVARPIVALTAYSDPA 90 (194)
T ss_pred cccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC-CCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEEccCChH
Confidence 455666777888888889986777777777766654333 22222222 1111 1577899999999999
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
.+..+.++|+..|+.||+.
T Consensus 91 ~i~~a~~~Gv~ayivkpi~ 109 (194)
T COG3707 91 LIEAAIEAGVMAYIVKPLD 109 (194)
T ss_pred HHHHHHHcCCeEEEecCcc
Confidence 9999999999999999997
No 65
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.69 E-value=2.3e-07 Score=60.10 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCC-
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEII- 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~- 67 (93)
|||+...|..++.+|...+ .+.+..+.|+.+|++.+..-.++ .++|++.+...+ ..+|||++++.+.
T Consensus 7 Vddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimvsslt~~ 86 (350)
T COG2201 7 VDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMVSSLTEE 86 (350)
T ss_pred EcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEEeccccc
Confidence 6899999999999999888 33488999999999998644322 234555433332 7899999997544
Q ss_pred -HHHHHHHHHcCCcceeeccch
Q 042991 68 -LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 -~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+...++++.||.||+.||..
T Consensus 87 g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 87 GAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cHHHHHHHHhcCcceeecCCCc
Confidence 455567899999999999984
No 66
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=98.68 E-value=3.4e-07 Score=59.41 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=62.8
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceE-EeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCC-
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEI- 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~- 66 (93)
++|+...+..+..+|... ++. +. .+.++.+++..+....++ .+.|++++..+. ..+|+|++|+..
T Consensus 9 Vdd~~~~~~~L~~~L~~~~~~~-vv~~a~~~~~al~~~~~~~~DlVllD~~mp~~dgle~l~~i~~~~~~piIvls~~~~ 87 (354)
T PRK00742 9 VDDSAFMRRLISEILNSDPDIE-VVGTAPDGLEAREKIKKLNPDVITLDVEMPVMDGLDALEKIMRLRPTPVVMVSSLTE 87 (354)
T ss_pred ECCCHHHHHHHHHHHhhCCCCE-EEEEECCHHHHHHHHhhhCCCEEEEeCCCCCCChHHHHHHHHHhCCCCEEEEecCCC
Confidence 578889999999999865 677 55 789999999887644321 223444432221 339999999753
Q ss_pred -CHHHHHHHHHcCCcceeeccch
Q 042991 67 -ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 -~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
......++++.|+++|+.||+.
T Consensus 88 ~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 88 RGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCHHHHHHHHhCCCcEEEeCCcc
Confidence 3455668899999999999983
No 67
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.65 E-value=5.6e-07 Score=54.99 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=60.2
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..+. ..+..+.++.+++..+....++ ++.|+++..... ...++|++|+..
T Consensus 7 vdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~~-- 84 (238)
T PRK11697 7 VDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLKPDVVFLDIQMPRISGLELVGMLDPEHMPYIVFVTAFD-- 84 (238)
T ss_pred ECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEEEeccH--
Confidence 58899999999999987763 3245788999999887543321 234555433222 234677777654
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
+...++++.|+.+|+.||+.
T Consensus 85 ~~~~~a~~~~~~~yl~KP~~ 104 (238)
T PRK11697 85 EYAIKAFEEHAFDYLLKPID 104 (238)
T ss_pred HHHHHHHhcCCcEEEECCCC
Confidence 45678899999999999986
No 68
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=98.62 E-value=2.1e-06 Score=46.47 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
+++++.....+...++..+++.+..+.++.+++..+...... ...+++++.... +.+|+++++...
T Consensus 11 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 90 (129)
T PRK10610 11 VDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90 (129)
T ss_pred EcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCC
Confidence 367778888898999888874366788999988877533321 122333322221 567999999888
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
......++++.|+++|+.||+.
T Consensus 91 ~~~~~~~~~~~g~~~~i~~p~~ 112 (129)
T PRK10610 91 KKENIIAAAQAGASGYVVKPFT 112 (129)
T ss_pred CHHHHHHHHHhCCCeEEECCCC
Confidence 8888888999999999999986
No 69
>PRK10651 transcriptional regulator NarL; Provisional
Probab=98.61 E-value=1.2e-06 Score=52.08 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+++++..+..+...|+.. ++..+..+.++.+++..+....++ +.++++. +....+..|+++++....
T Consensus 12 v~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~vi~l~~~~~ 91 (216)
T PRK10651 12 IDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNH 91 (216)
T ss_pred ECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 478888888899988764 455244688999999887543321 1233443 222236789999999888
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
......+++.|+++|+.||+.
T Consensus 92 ~~~~~~~~~~g~~~~i~k~~~ 112 (216)
T PRK10651 92 EEDVVTALKRGADGYLLKDME 112 (216)
T ss_pred HHHHHHHHHcCCCEEEeCCCC
Confidence 888889999999999999986
No 70
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=98.60 E-value=1.3e-06 Score=51.60 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=65.0
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+++++..+..+...|... ++..+..+.++.+++..+....++ +..|+++ +....+..|++++|+...
T Consensus 9 v~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ii~ls~~~~ 88 (211)
T PRK15369 9 VDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLEPDIVILDLGLPGMNGLDVIPQLHQRWPAMNILVLTARQE 88 (211)
T ss_pred ECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 477888889999999765 355244788999988776533321 2234444 222237789999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
......+++.|+++|+.||+..
T Consensus 89 ~~~~~~~~~~g~~~~l~kp~~~ 110 (211)
T PRK15369 89 EHMASRTLAAGALGYVLKKSPQ 110 (211)
T ss_pred HHHHHHHHHhCCCEEEeCCCCH
Confidence 8888899999999999999863
No 71
>PRK10403 transcriptional regulator NarP; Provisional
Probab=98.58 E-value=1.5e-06 Score=51.64 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+++++..+..+...|+. .++. +. .+.++.+++..+....++ ...+++++ ....+..|+++++...
T Consensus 12 i~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~ 90 (215)
T PRK10403 12 VDDHPLMRRGVRQLLELDPGFE-VVAEAGDGASAIDLANRLDPDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSD 90 (215)
T ss_pred EcCCHHHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 46788888888888874 4666 54 688999999877543321 12334432 2222678999999888
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.......+++.|+++|+.||+.
T Consensus 91 ~~~~~~~~~~~g~~~~i~kp~~ 112 (215)
T PRK10403 91 ASSDVFALIDAGADGYLLKDSD 112 (215)
T ss_pred ChHHHHHHHHcCCCeEEecCCC
Confidence 8888888999999999999986
No 72
>PRK13435 response regulator; Provisional
Probab=98.51 E-value=2.6e-06 Score=48.40 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc----------CCCchHHHhhh--hcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ----------SANGFDVRTIY--SREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~----------~~~~~d~l~~~--~~~~pii~lt~~~~ 67 (93)
++++......+...|+..|+. +. .+.++.+++..+....++ ...+++.+... ...+|+|++++..+
T Consensus 11 id~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii~ls~~~~ 89 (145)
T PRK13435 11 VEDEALIALELEKLVEEAGHE-VVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVEVVFMTGNPE 89 (145)
T ss_pred EcCcHHHHHHHHHHHHhcCCe-EEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEEEEeCCHH
Confidence 467778888899999888888 65 789999998887533221 11233332222 16789999987543
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
. ..++..|+++|+.||++.
T Consensus 90 ~---~~~~~~ga~~~l~kp~~~ 108 (145)
T PRK13435 90 R---VPHDFAGALGVIAKPYSP 108 (145)
T ss_pred H---HHHHhcCcceeEeCCCCH
Confidence 2 457789999999999863
No 73
>PRK10693 response regulator of RpoS; Provisional
Probab=98.47 E-value=1.1e-06 Score=56.10 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=47.1
Q ss_pred EeCCHHHHHHHhccCcc---------cCCCchHHH---hhhhcCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 25 CSCSGRRALQFLGLDEE---------QSANGFDVR---TIYSREIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 25 ~~~~~~~a~~~~~~~~~---------~~~~~~d~l---~~~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.++.+|++.+....+ +++.|++++ ....+.+|+|++|+..+.+...++++.|+++|+.||+.
T Consensus 2 ~a~~g~~al~~l~~~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 35677788777754332 123455543 22237799999999999999999999999999999984
No 74
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.46 E-value=5.3e-06 Score=43.06 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+++++..+..+...+...|+. +..+.+..+++..+...... ...+.+. +....+.+|+++++.....
T Consensus 3 ~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 81 (113)
T cd00156 3 VDDDPLIRELLRRLLEKEGYE-VVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGDD 81 (113)
T ss_pred ecCcHHHHHHHHHHHhhcCce-EEEecCHHHHHHHHHhCCCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEecccH
Confidence 366777888899989888888 88999999988877533221 1122332 2222367899999887777
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+.+|+.||+..
T Consensus 82 ~~~~~~~~~~~~~~i~~p~~~ 102 (113)
T cd00156 82 EDAVEALKAGADDYLTKPFSP 102 (113)
T ss_pred HHHHHHHHcChhhHccCCCCH
Confidence 777788899999999999873
No 75
>PRK13557 histidine kinase; Provisional
Probab=98.37 E-value=4.9e-06 Score=55.94 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=67.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCc-cc---------C-CCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDE-EQ---------S-ANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~---------~-~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+++++..+..+..+|+..||. +..+.++.+++..+.... ++ + ..+++++ ....+.+|+++++...
T Consensus 421 v~~~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~ 499 (540)
T PRK13557 421 VDDRPDVAELARMILEDFGYR-TLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYA 499 (540)
T ss_pred EcCcHHHHHHHHHHHHhcCCe-EEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCC
Confidence 467888889999999989999 999999999999885332 11 1 2344442 2223779999999988
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.......++..|+.+|+.||+.
T Consensus 500 ~~~~~~~~~~~g~~~~l~kp~~ 521 (540)
T PRK13557 500 EASIERTDAGGSEFDILNKPYR 521 (540)
T ss_pred chhhhhhhccccCCceeeCCCC
Confidence 8887778889999999999987
No 76
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=98.27 E-value=1.1e-05 Score=49.35 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=59.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-------cCCCchHHHh----hhhcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE-------QSANGFDVRT----IYSREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-------~~~~~~d~l~----~~~~~~pii~lt~~~~~~ 69 (93)
++|++..+..++.+|. .++..+..+.++.+++..+...+. ++.+|++.+. ...+.++||++|+..+.
T Consensus 16 v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~- 93 (216)
T PRK10100 16 ITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDY- 93 (216)
T ss_pred EeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCCCCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchh-
Confidence 5789999999999998 344436678899999887653121 1234555432 22378999999998763
Q ss_pred HHHHHHH--cCCcceeeccch
Q 042991 70 RIDRYLE--DGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~--~ga~d~l~kP~~ 88 (93)
...++. .||.+|+.|+.+
T Consensus 94 -~~~~~~~~~Ga~G~l~K~~~ 113 (216)
T PRK10100 94 -PYREIENWPHINGVFYAMED 113 (216)
T ss_pred -HHHHHHHhcCCeEEEECCCC
Confidence 334455 599999999875
No 77
>PRK09191 two-component response regulator; Provisional
Probab=98.24 E-value=2.4e-05 Score=48.38 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc------C----CCchHHHhhhh--cCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ------S----ANGFDVRTIYS--REIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~------~----~~~~d~l~~~~--~~~pii~lt~~~~ 67 (93)
+++++..+..+...|+..|+. +. .+.++.+++..+.....+ . ..|++.+.... ..+|+|++|+..+
T Consensus 143 idd~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii~ls~~~~ 221 (261)
T PRK09191 143 IEDEPIIAMDLEQLVESLGHR-VTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTFDVPVIFITAFPE 221 (261)
T ss_pred EcCcHHHHHHHHHHHhcCCCE-EEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 478888888999999888888 66 788999999887643321 1 22344432221 3799999998766
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.... ....|+.+|+.||++.
T Consensus 222 ~~~~--~~~~~~~~~l~kP~~~ 241 (261)
T PRK09191 222 RLLT--GERPEPAFLITKPFQP 241 (261)
T ss_pred HHHH--HHhcccCceEECCCCH
Confidence 5443 3346788999999963
No 78
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=98.04 E-value=6.1e-05 Score=45.77 Aligned_cols=88 Identities=6% Similarity=-0.136 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhccCccc----C----C---CchHHHh---hhhcCCcEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLGLDEEQ----S----A---NGFDVRT---IYSREIPVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~~~~~~----~----~---~~~d~l~---~~~~~~pii~lt~ 64 (93)
+||++..+..++.+|...++ ..+..+.++.+++..++...++ + + .|.+++. ...+++++|++|+
T Consensus 6 vDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~ 85 (207)
T PRK15411 6 MDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMA 85 (207)
T ss_pred EcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEEC
Confidence 58999999999999986553 3367889999999887543321 2 2 2333322 2237899999998
Q ss_pred CCCHHHHHHHHHcCCcc-eeeccchh
Q 042991 65 EIILVRIDRYLEDGAED-SETCQMWA 89 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d-~l~kP~~~ 89 (93)
..+.... .++..|+.. |+.|+.+.
T Consensus 86 ~~~~~~~-~~~~~~~~~~~~~K~~~~ 110 (207)
T PRK15411 86 IANIHFD-EYLLVRKNLLISSKSIKP 110 (207)
T ss_pred CCchhHH-HHHHHHhhceeeeccCCH
Confidence 8776553 345555544 78998763
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=97.60 E-value=0.00032 Score=50.03 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCCceEEeCCHHHHHHHhccC-ccc---------CCCch----HHH---hhhhcCCcEEEEcCCCC
Q 042991 7 DRKVIERLLTISSSRDLYCSCSGRRALQFLGLD-EEQ---------SANGF----DVR---TIYSREIPVVIMSPEII 67 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~-~~~---------~~~~~----d~l---~~~~~~~pii~lt~~~~ 67 (93)
.++.++..|+..||+ +.++.++.+|+..+... ..+ +++|+ +++ +....++|||++|+..+
T Consensus 20 i~~~L~~~Le~~G~e-V~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 20 AVERLADALSQQNVT-VIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHhhCCCCCEEEEEcCCc
Confidence 688999999999999 99999999999999642 321 23344 342 22236899999999885
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=97.10 E-value=0.0018 Score=40.47 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+..++.... .+.+..+.++.++++.++..... +++|+++ ++...+..+|+++|++..
T Consensus 7 ~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfvt~~~~ 86 (244)
T COG3279 7 VDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFVTAHDE 86 (244)
T ss_pred ecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccCCCeEEEeeccCccchHHHHHHhcccCCCCeEEEEEehHH
Confidence 4788999999999888433 23233788888888888644211 2345554 333336778999998655
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
-. ..+++..+-||+.||+.
T Consensus 87 ~a--~~afev~a~d~i~kp~~ 105 (244)
T COG3279 87 YA--VAAFEVEALDYLLKPIS 105 (244)
T ss_pred HH--HHHHhHHHHhhhcCcch
Confidence 44 45678889999999994
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.63 E-value=0.0084 Score=43.27 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCC----------CchHH----Hhhh-hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSA----------NGFDV----RTIY-SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~----------~~~d~----l~~~-~~~~pii~lt~~ 65 (93)
+++++..+..+..+|...|+. +..+.++.+ + .... +++ .+... +... ....+++++++.
T Consensus 542 ~d~~~~~~~~l~~~L~~~g~~-v~~~~~~~~-l---~~~~-~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 615 (919)
T PRK11107 542 VEPNSAAAQATLDILSETPLE-VTYSPTLSQ-L---PEAH-YDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPC 615 (919)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEcCCHHH-h---ccCC-CCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCC
Confidence 367888999999999999999 988888887 2 1111 111 11111 1111 144567778888
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
........+.+.|+++|+.||+..
T Consensus 616 ~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 616 HEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cchhhHHHHhhCCCceEECCCCCH
Confidence 888888888999999999999863
No 82
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=93.55 E-value=0.19 Score=27.77 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCC--CchH---------H---HhhhhcCCcEEEEcCCCCHHHHHHH
Q 042991 9 KVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSA--NGFD---------V---RTIYSREIPVVIMSPEIILVRIDRY 74 (93)
Q Consensus 9 ~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~--~~~d---------~---l~~~~~~~pii~lt~~~~~~~~~~~ 74 (93)
..+...|.+.|++ +..+.+..+++..++....... ..+| + +......+||.+++.....+.+...
T Consensus 7 ~~l~~~L~~~~~~-vv~~~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~~~ 85 (115)
T PF03709_consen 7 RELAEALEQRGRE-VVDADSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLPAE 85 (115)
T ss_dssp HHHHHHHHHTTTE-EEEESSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCCHH
T ss_pred HHHHHHHHHCCCE-EEEeCChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCCHH
Confidence 4566777778999 9999999999999974432211 1122 1 3334499999999986644333222
Q ss_pred HHcCCcceeec
Q 042991 75 LEDGAEDSETC 85 (93)
Q Consensus 75 ~~~ga~d~l~k 85 (93)
.=..+++|+-.
T Consensus 86 ~l~~v~~~i~l 96 (115)
T PF03709_consen 86 VLGEVDGFIWL 96 (115)
T ss_dssp HHCCESEEEET
T ss_pred HHhhccEEEEe
Confidence 22235555544
No 83
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.91 E-value=0.26 Score=31.93 Aligned_cols=35 Identities=20% Similarity=-0.021 Sum_probs=26.4
Q ss_pred cCCcEEEEcC-CCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSP-EIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~-~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
++..++++.+ ..+.....+++..|+.+|+.+|...
T Consensus 40 ~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~ 75 (322)
T TIGR03815 40 RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAE 75 (322)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCH
Confidence 4444665555 5567777789999999999999873
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=91.10 E-value=0.66 Score=19.70 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhc
Q 042991 2 NDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~ 37 (93)
++++.....+...+...+++ +..+.+..+++..+.
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 41 (55)
T smart00448 7 DDDPLLRELLKALLEREGYE-VDEATDGEEALELLK 41 (55)
T ss_pred cCCHHHHHHHHHHHhhcCcE-EEEeCCHHHHHHHHH
Confidence 56777778888888888888 889999999887774
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=90.79 E-value=0.31 Score=33.20 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=46.0
Q ss_pred CCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 20 SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 20 ~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+. +..+.++..+++........ ++.|+++..... -..+++++|.........+.+++|++++++||..
T Consensus 13 ~~-v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (435)
T COG3706 13 KE-VATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPVN 90 (435)
T ss_pred hh-hhhccchHHHHHHHhcCCCCeEEeecccCCcCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCCC
Confidence 34 66688899988887433221 223344322221 2223788888888888889999999999999986
No 86
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.76 E-value=2.9 Score=26.53 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=45.0
Q ss_pred hcCCCce-EEeCCHHHHHHHhccCcc---c---------CCCchHHHhhhh--cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 17 ISSSRDL-YCSCSGRRALQFLGLDEE---Q---------SANGFDVRTIYS--REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 17 ~~~~~~v-~~~~~~~~a~~~~~~~~~---~---------~~~~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
+.||.++ +..+|...|.+....... + .+...+.+..+. ..+|||+=.+-.++++..++++.|++.
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdg 200 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADA 200 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCE
Confidence 4698844 566677777666532211 0 111233333222 578999888889999999999999999
Q ss_pred eeec
Q 042991 82 SETC 85 (93)
Q Consensus 82 ~l~k 85 (93)
++.-
T Consensus 201 VlV~ 204 (248)
T cd04728 201 VLLN 204 (248)
T ss_pred EEEC
Confidence 8753
No 87
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=90.45 E-value=3.7 Score=27.16 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=46.0
Q ss_pred hcCCCc-eEEeCCHHHHHHHhccCcc-----c-------CCCchHHHhhhh--cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 17 ISSSRD-LYCSCSGRRALQFLGLDEE-----Q-------SANGFDVRTIYS--REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 17 ~~~~~~-v~~~~~~~~a~~~~~~~~~-----~-------~~~~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
+.||.+ +++.+|...|.+....... . .+...+.+.... ..+|+|+=.+=..+++...+++.|++.
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadg 274 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDG 274 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCE
Confidence 469984 5667777777666532221 1 111223222211 779999888889999999999999999
Q ss_pred eeec
Q 042991 82 SETC 85 (93)
Q Consensus 82 ~l~k 85 (93)
.+..
T Consensus 275 VL~n 278 (326)
T PRK11840 275 VLMN 278 (326)
T ss_pred EEEc
Confidence 8864
No 88
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.05 E-value=4.2 Score=25.86 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=44.9
Q ss_pred hcCCCce-EEeCCHHHHHHHhccCcc---c---------CCCchHH---HhhhhcCCcEEEEcCCCCHHHHHHHHHcCCc
Q 042991 17 ISSSRDL-YCSCSGRRALQFLGLDEE---Q---------SANGFDV---RTIYSREIPVVIMSPEIILVRIDRYLEDGAE 80 (93)
Q Consensus 17 ~~~~~~v-~~~~~~~~a~~~~~~~~~---~---------~~~~~d~---l~~~~~~~pii~lt~~~~~~~~~~~~~~ga~ 80 (93)
+.||.++ +..+|...|.+....... + .+...+. +... ..+|||+=.+-..+++..++++.|++
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAd 199 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGAD 199 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 4699844 566777777666532211 0 1112333 2232 67899988888999999999999999
Q ss_pred ceeec
Q 042991 81 DSETC 85 (93)
Q Consensus 81 d~l~k 85 (93)
.++.-
T Consensus 200 gVlV~ 204 (250)
T PRK00208 200 AVLLN 204 (250)
T ss_pred EEEEC
Confidence 98753
No 89
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=87.34 E-value=3.3 Score=22.66 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------CCCc-hHH---HhhhhcCCcEEEEcCCCCHHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------SANG-FDV---RTIYSREIPVVIMSPEIILVR 70 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~~~~-~d~---l~~~~~~~pii~lt~~~~~~~ 70 (93)
|||+...+..+..+|+-.|++ +..+.+..-........... ...+ .+. +....+++|++++........
T Consensus 5 Iddd~~R~~~L~~ILeFlGe~-~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~l~~l~~~~~~~Pvlllg~~~~~~~ 83 (109)
T PF06490_consen 5 IDDDAERRQRLSTILEFLGEQ-CEAVSSSDWSQADWSSPWEACAVILGSCSKLAELLKELLKWAPHIPVLLLGEHDSPEE 83 (109)
T ss_pred ECCcHHHHHhhhhhhhhcCCC-eEEecHHHHHHhhhhcCCcEEEEEecCchhHHHHHHHHHhhCCCCCEEEECCCCcccc
Confidence 589999999999999988988 88877644411111111111 0110 111 223339999999987766622
Q ss_pred HHHHHHcCCcceeeccch
Q 042991 71 IDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 71 ~~~~~~~ga~d~l~kP~~ 88 (93)
.. .+.+-|..|+.
T Consensus 84 ~~-----nvvg~Le~Pl~ 96 (109)
T PF06490_consen 84 LP-----NVVGELEEPLN 96 (109)
T ss_pred cc-----CeeEecCCCCC
Confidence 11 14455666664
No 90
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=86.09 E-value=4.2 Score=22.58 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCceEEeCC---HHHHHHHhccCccc--CCCchH---------H---HhhhhcCCcEEEEcCCCCHHH
Q 042991 8 RKVIERLLTISSSRDLYCSCS---GRRALQFLGLDEEQ--SANGFD---------V---RTIYSREIPVVIMSPEIILVR 70 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~---~~~a~~~~~~~~~~--~~~~~d---------~---l~~~~~~~pii~lt~~~~~~~ 70 (93)
...+..+|+..||+ +..... .++..+.+...... .++..+ + +....+.-+.+++.+...++.
T Consensus 16 ~~~~~~~l~~~G~~-vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 16 AKVIARALRDAGFE-VIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 35667788889999 665553 56666665433321 111111 1 111113233444565555666
Q ss_pred HHHHHHcCCcceeecc
Q 042991 71 IDRYLEDGAEDSETCQ 86 (93)
Q Consensus 71 ~~~~~~~ga~d~l~kP 86 (93)
..++.++|++.|+..-
T Consensus 95 ~~~~~~~G~d~~~~~~ 110 (122)
T cd02071 95 YELLKEMGVAEIFGPG 110 (122)
T ss_pred HHHHHHCCCCEEECCC
Confidence 6777899999998763
No 91
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=84.51 E-value=8.3 Score=24.64 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=45.1
Q ss_pred HHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCchHH----Hhhhh----cCCcEEEEcCCCCHHHHHHHHHcC
Q 042991 13 RLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANGFDV----RTIYS----REIPVVIMSPEIILVRIDRYLEDG 78 (93)
Q Consensus 13 ~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~~d~----l~~~~----~~~pii~lt~~~~~~~~~~~~~~g 78 (93)
.+-++.|...++.+.|.++.-..++.... . ++..+.+ ...+. .+.-+|.-|+=.+++++.+..+.|
T Consensus 150 ~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g 229 (254)
T COG0134 150 DRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAG 229 (254)
T ss_pred HHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC
Confidence 33345777768889999998877752221 0 1111111 11112 334455556667799999999999
Q ss_pred Ccceeec
Q 042991 79 AEDSETC 85 (93)
Q Consensus 79 a~d~l~k 85 (93)
++.||.-
T Consensus 230 a~a~LVG 236 (254)
T COG0134 230 ADAFLVG 236 (254)
T ss_pred CCEEEec
Confidence 9999864
No 92
>PRK12704 phosphodiesterase; Provisional
Probab=84.50 E-value=0.48 Score=33.05 Aligned_cols=35 Identities=17% Similarity=-0.037 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCCHH--HHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILV--RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~--~~~~~~~~ga~d~l~kP~~~ 89 (93)
....+|++|+.+... ....+++.|+.|+..||+..
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~i 284 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARI 284 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCH
Confidence 445678899988766 67788999999999999863
No 93
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=81.13 E-value=3 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+|+=.+-+.+.+...+++.|+|..|..
T Consensus 174 ~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 174 ADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp GSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 6999999999999999999999999999875
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=79.44 E-value=9.3 Score=21.73 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCceEEeC---CHHHHHHHhccCccc--CCCchH-----H-------Hhhhhc-CCcEEEEcCCCCH
Q 042991 7 DRKVIERLLTISSSRDLYCSC---SGRRALQFLGLDEEQ--SANGFD-----V-------RTIYSR-EIPVVIMSPEIIL 68 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~---~~~~a~~~~~~~~~~--~~~~~d-----~-------l~~~~~-~~pii~lt~~~~~ 68 (93)
-...+..+|+..||+ |.... +.+++.+...+.... .+++++ . +..... .++ +++-+....
T Consensus 18 g~~iv~~~l~~~Gfe-Vi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~-vivGG~~~~ 95 (132)
T TIGR00640 18 GAKVIATAYADLGFD-VDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL-VVVGGVIPP 95 (132)
T ss_pred HHHHHHHHHHhCCcE-EEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCE-EEEeCCCCh
Confidence 446788889999999 55443 577777776544322 122222 1 111112 333 334443445
Q ss_pred HHHHHHHHcCCcceeec
Q 042991 69 VRIDRYLEDGAEDSETC 85 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~k 85 (93)
++.....++|++.|+..
T Consensus 96 ~~~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 96 QDFDELKEMGVAEIFGP 112 (132)
T ss_pred HhHHHHHHCCCCEEECC
Confidence 55666778999998875
No 95
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=74.97 E-value=6 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+|+=.+-+.+++...+++.|+|..+..
T Consensus 181 a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 181 ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 6999999999999999999999999998865
No 96
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.82 E-value=17 Score=23.67 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=27.7
Q ss_pred chHHHhhhh--cCCcEE--EEcCCCCHHHHHHHHHcCCcceee
Q 042991 46 GFDVRTIYS--REIPVV--IMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 46 ~~d~l~~~~--~~~pii--~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+++++.... ..+||+ ...+-.+++....+++.|++.++.
T Consensus 182 d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 182 PYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 444443332 468997 555556899999999999998765
No 97
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=70.60 E-value=8.2 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=20.8
Q ss_pred EcCCCCHHHHHHHHHcCCcceeec
Q 042991 62 MSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 62 lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
-|+.-+++.+.+|+..|||+.+.-
T Consensus 37 CsGrvn~~fvl~Al~~GaDGV~v~ 60 (132)
T COG1908 37 CSGRVNPEFVLKALRKGADGVLVA 60 (132)
T ss_pred ccCccCHHHHHHHHHcCCCeEEEe
Confidence 467889999999999999998763
No 98
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.95 E-value=16 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.0
Q ss_pred cCCcEE--EEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVV--IMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii--~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||+ ...+-.+++....++++|++.++.
T Consensus 196 ~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 196 GKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 568998 555555899999999999998764
No 99
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=69.12 E-value=28 Score=22.47 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|||+=.+=..+++...+++.|++..+..
T Consensus 188 ~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 188 AKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 7799999888899999999999999998764
No 100
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=67.81 E-value=14 Score=22.53 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++...+-.+.+.+.+..+.|++.++.
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 357999888888889999999999999875
No 101
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=67.71 E-value=7.5 Score=24.24 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.6
Q ss_pred cCCcEEEEcC------CCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSP------EIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~------~~~~~~~~~~~~~ga~d~l~k 85 (93)
-.+||++++= +.....+..+-++|+++||.-
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiiv 130 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIV 130 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEec
Confidence 5689998874 355677778889999999975
No 102
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=67.08 E-value=8.8 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHcCCcceee
Q 042991 63 SPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 63 t~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++.-++..+.+|++.|||+.+.
T Consensus 37 ~Grv~~~~il~Af~~GADGV~V 58 (124)
T PF02662_consen 37 SGRVDPEFILRAFEKGADGVLV 58 (124)
T ss_pred CCccCHHHHHHHHHcCCCEEEE
Confidence 4678899999999999999876
No 103
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.98 E-value=23 Score=21.69 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHhhcCCC-ceEEeCCHHHHHHHhccCcc-------------cCCCchHH--Hhhhh-cCCcEEEEcCCCCHHHHHHHH
Q 042991 13 RLLTISSSR-DLYCSCSGRRALQFLGLDEE-------------QSANGFDV--RTIYS-REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 13 ~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~-------------~~~~~~d~--l~~~~-~~~pii~lt~~~~~~~~~~~~ 75 (93)
..++..+ . ..--|.+.++++...+..-. .. .+.|+ +.++. ..+|+|.=-...+++...+++
T Consensus 86 ~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al 163 (192)
T PF04131_consen 86 REIKEKY-QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQADVPVIAEGRIHTPEQAAKAL 163 (192)
T ss_dssp HHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHH
T ss_pred HHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHH
Confidence 3344444 4 34456788888877632210 11 34444 44433 678888777778899999999
Q ss_pred HcCCcceee
Q 042991 76 EDGAEDSET 84 (93)
Q Consensus 76 ~~ga~d~l~ 84 (93)
++||+..+.
T Consensus 164 ~~GA~aVVV 172 (192)
T PF04131_consen 164 ELGAHAVVV 172 (192)
T ss_dssp HTT-SEEEE
T ss_pred hcCCeEEEE
Confidence 999998764
No 104
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=66.79 E-value=16 Score=22.38 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++...+-.+.+...++++.|++.++.
T Consensus 172 ~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 468999877777889999999999988765
No 105
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=64.83 E-value=20 Score=26.48 Aligned_cols=57 Identities=7% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCCCc-----hH--H---HhhhhcCCcEEEEcCC
Q 042991 8 RKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSANG-----FD--V---RTIYSREIPVVIMSPE 65 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~~-----~d--~---l~~~~~~~pii~lt~~ 65 (93)
...|...|++.||+ +..+.+..++...++......... .. + ++.....+||+++...
T Consensus 19 ~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~~~~~ 85 (714)
T PRK15400 19 IRELHRALERLNFQ-IVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANT 85 (714)
T ss_pred HHHHHHHHHHCCcE-EEEeCCHHHHHHHHhcccceeEEEEecchhhHHHHHHHHHhCCCCCEEEEccc
Confidence 35566778889999 999999999999886332111100 01 1 3333489999998864
No 106
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=64.37 E-value=30 Score=22.70 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=24.1
Q ss_pred cCCcEE--EEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVV--IMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii--~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||+ ...+-.+++....++++|++.++.
T Consensus 202 ~~iPVV~~AeGGI~TPedaa~vme~GAdgVaV 233 (293)
T PRK04180 202 GRLPVVNFAAGGIATPADAALMMQLGADGVFV 233 (293)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEE
Confidence 568998 555556899999999999998764
No 107
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=62.56 E-value=38 Score=21.66 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCch--HH--Hhhhh----cCCcEEEEcCCCCHHHHHHHH
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANGF--DV--RTIYS----REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~~--d~--l~~~~----~~~pii~lt~~~~~~~~~~~~ 75 (93)
.+..+-+..|-+.++.+.+.++....+..... . ++..+ |+ ...+. .+..+|.-|+-.+++++.+..
T Consensus 149 ~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~ 228 (254)
T PF00218_consen 149 ELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA 228 (254)
T ss_dssp HHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC
T ss_pred HHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH
Confidence 33444456776668889999997777642211 0 11111 11 11111 445566666778888888888
Q ss_pred HcCCcceeec
Q 042991 76 EDGAEDSETC 85 (93)
Q Consensus 76 ~~ga~d~l~k 85 (93)
+.|++.++.-
T Consensus 229 ~~G~davLVG 238 (254)
T PF00218_consen 229 RAGADAVLVG 238 (254)
T ss_dssp TTT-SEEEES
T ss_pred HCCCCEEEEC
Confidence 9999999864
No 108
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=61.95 E-value=22 Score=21.75 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|++...+-.+.+...++++.|++.++.-
T Consensus 176 ~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 176 LGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 4689998777778889999999999987653
No 109
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=61.41 E-value=25 Score=25.99 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCCC-------chHH---HhhhhcCCcEEEEcCCC
Q 042991 8 RKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSAN-------GFDV---RTIYSREIPVVIMSPEI 66 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~-------~~d~---l~~~~~~~pii~lt~~~ 66 (93)
...|...|++.||+ +..+.+..++...++........ .-.+ ++.....+||+++....
T Consensus 19 ~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~~~~~~ 86 (713)
T PRK15399 19 IKELESALQAQGFQ-TIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTH 86 (713)
T ss_pred HHHHHHHHHHCCcE-EEEecCHHHHHHHHhcccceeEEEEecccchHHHHHHHHHhCCCCCEEEEcCcc
Confidence 34566677889999 99999999999988632211110 0011 33344899999988643
No 110
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=60.13 E-value=7.5 Score=22.12 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...+....|+.++|.||++
T Consensus 95 ~AeqLkQ~g~~~CllKPls 113 (140)
T COG4999 95 NAEQLKQDGAGACLLKPLS 113 (140)
T ss_pred hHHHHhhcchHhHhhCcch
Confidence 3445567899999999996
No 111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.66 E-value=44 Score=21.37 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=23.6
Q ss_pred cCCcEEEEcCC------CCHHHHHHHHHcCCcceeecc
Q 042991 55 REIPVVIMSPE------IILVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~------~~~~~~~~~~~~ga~d~l~kP 86 (93)
..+|+++++=. +-+....++.++|+++.|..-
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipD 125 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPD 125 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECC
Confidence 67898888833 334556678899999998853
No 112
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=58.28 E-value=8.4 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCC-ceEEeCCHHHHH
Q 042991 6 VDRKVIERLLTISSSR-DLYCSCSGRRAL 33 (93)
Q Consensus 6 ~~~~~l~~~l~~~~~~-~v~~~~~~~~a~ 33 (93)
.....+...|++.||. +|..|.+|.++-
T Consensus 17 m~LqALa~~Le~rG~~AsCYtC~dG~~~~ 45 (105)
T PF08844_consen 17 MSLQALAIVLERRGYLASCYTCGDGRDMN 45 (105)
T ss_pred HHHHHHHHHHHhCCceeEEEecCCCCCCC
Confidence 3557788889999987 799998877643
No 113
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.07 E-value=30 Score=18.77 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCCceEEeC---CHHHHHHHhccCccc--CCCch---------HH---Hhhhhc-CCcEEEEcCCCCHH
Q 042991 8 RKVIERLLTISSSRDLYCSC---SGRRALQFLGLDEEQ--SANGF---------DV---RTIYSR-EIPVVIMSPEIILV 69 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~---~~~~a~~~~~~~~~~--~~~~~---------d~---l~~~~~-~~pii~lt~~~~~~ 69 (93)
...+..+|+..||+ +.... +.++..+.+.+..+. .++.. ++ +....+ .++|+ +.+.....
T Consensus 16 ~~~~~~~l~~~G~~-V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~-vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFE-VIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL-VGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE-EECCCCCh
Confidence 45677888899999 65433 455555655433321 11111 11 222224 55555 55544444
Q ss_pred HHHHHHHcCCcceeecc
Q 042991 70 RIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP 86 (93)
....+.+.|+|.|+...
T Consensus 94 ~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 94 DFKFLKEIGVDAYFGPA 110 (119)
T ss_pred hHHHHHHcCCeEEECCH
Confidence 33457788998777643
No 114
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=57.06 E-value=24 Score=22.44 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCceEEeCCHHHHHHHhccCcc-cCCCc---------hHHHhhhh---c-CCcEEEEcCCCCHHHHHHHHH
Q 042991 11 IERLLTISSSRDLYCSCSGRRALQFLGLDEE-QSANG---------FDVRTIYS---R-EIPVVIMSPEIILVRIDRYLE 76 (93)
Q Consensus 11 l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~~~~~---------~d~l~~~~---~-~~pii~lt~~~~~~~~~~~~~ 76 (93)
+....+..|...+..+.+.+++......... ....+ ++....+. + ..++|..++-.+++.+.++.+
T Consensus 152 li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~ 231 (260)
T PRK00278 152 LLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAK 231 (260)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHH
Confidence 3334445676546677888887665532211 01111 11111111 3 358888888889999999999
Q ss_pred cCCcceee
Q 042991 77 DGAEDSET 84 (93)
Q Consensus 77 ~ga~d~l~ 84 (93)
.|++.++.
T Consensus 232 ~Gad~vlV 239 (260)
T PRK00278 232 AGADAVLV 239 (260)
T ss_pred cCCCEEEE
Confidence 99999765
No 115
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.58 E-value=52 Score=21.30 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCC------CHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEI------ILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~------~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+++++=.+ -.....++.+.|+++.|..
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 889999998433 2444567889999999876
No 116
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=56.27 E-value=29 Score=21.24 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.++..++++.|++.++.
T Consensus 189 ~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 189 TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 578999888888888888899999998765
No 117
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=55.87 E-value=33 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++...+-...+...++++.||+.+..
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 678999877777768888899999987653
No 118
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=55.50 E-value=84 Score=23.35 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCchHH----Hhhhh----cCCcEEEEcCCCCHHHHHHHH
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANGFDV----RTIYS----REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~~d~----l~~~~----~~~pii~lt~~~~~~~~~~~~ 75 (93)
.+..+-++.|.+.++.+.+.+|....+..... . ++..+.+ ...+. .+..+|.-|+-.+++++.+..
T Consensus 151 ~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~ 230 (695)
T PRK13802 151 HLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYA 230 (695)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHH
Confidence 33344456777768889999998777753211 0 1111111 11111 333445556667788888888
Q ss_pred HcCCcceee
Q 042991 76 EDGAEDSET 84 (93)
Q Consensus 76 ~~ga~d~l~ 84 (93)
+.|+|.+|.
T Consensus 231 ~~G~davLI 239 (695)
T PRK13802 231 RAGADAVLV 239 (695)
T ss_pred HCCCCEEEE
Confidence 999999986
No 119
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.74 E-value=34 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.007 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
..++.++-....++..+.++++.||++.+..-+
T Consensus 67 ~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V 99 (267)
T PRK10128 67 YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMV 99 (267)
T ss_pred cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCc
Confidence 555556667788889999999999999887644
No 120
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=54.31 E-value=31 Score=21.89 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=25.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
..++.++=....++..+.++++.|+++++..=+
T Consensus 61 ~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v 93 (249)
T TIGR03239 61 SASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFV 93 (249)
T ss_pred cCCCcEEECCCCCHHHHHHHhcCCCCEEEecCc
Confidence 555556667788899999999999999876543
No 121
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=52.51 E-value=40 Score=20.68 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+++.++++.|++.++.
T Consensus 188 ~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 188 VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 678999888888888998888999998875
No 122
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=52.35 E-value=19 Score=19.33 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.-+|........+....+++.|.+=++-||+..
T Consensus 63 ~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 63 VDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp ESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSS
T ss_pred CCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcC
Confidence 44433433334556777789999999999999853
No 123
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=52.23 E-value=29 Score=21.72 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.++.+|++|..-..+.+..++++|..+|
T Consensus 22 ~~v~LvaVsK~~~~~~i~~~~~~G~~~f 49 (227)
T cd06822 22 SKPRLVAVSKTKPAELIKEAYDAGQRHF 49 (227)
T ss_pred CCcEEEEEECCCCHHHHHHHHHcCCccc
Confidence 4578999999999999999999998765
No 124
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=51.40 E-value=17 Score=27.47 Aligned_cols=28 Identities=18% Similarity=-0.038 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSG 29 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~ 29 (93)
+||++..+..+..+|++.|++ |..+.++
T Consensus 695 vdD~~~~r~~l~~~L~~~G~~-v~~a~~~ 722 (894)
T PRK10618 695 DITSEEVRKIVTRQLENWGAT-CITPDER 722 (894)
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEcCcc
Confidence 478999999999999999999 8887753
No 125
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=49.72 E-value=51 Score=19.19 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCCceEEeCCHHHHHHHhc
Q 042991 7 DRKVIERLLTISSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~ 37 (93)
....+.++|.++||+ +.-++-...+-+.+.
T Consensus 31 ~sy~V~kyL~~~GY~-ViPVNP~~~~~eiLG 60 (140)
T COG1832 31 PSYRVAKYLQQKGYR-VIPVNPKLAGEEILG 60 (140)
T ss_pred cHHHHHHHHHHCCCE-EEeeCcccchHHhcC
Confidence 345677888889999 888887555545553
No 126
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.92 E-value=41 Score=21.43 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
..++.++=....++..+.++++.|+++++..-+
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v 100 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFV 100 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCc
Confidence 555666677788899999999999999876543
No 127
>PRK04302 triosephosphate isomerase; Provisional
Probab=48.87 E-value=40 Score=20.77 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|++.-.+-.+++....+.+.|+|+++.-
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 4689998777778888888888999998764
No 128
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.93 E-value=44 Score=17.95 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCCCceEEe---CCHHHHHHHhc
Q 042991 7 DRKVIERLLTISSSRDLYCS---CSGRRALQFLG 37 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~---~~~~~a~~~~~ 37 (93)
-...+..+|++.|++ +... .+.++..+.+.
T Consensus 16 Gl~~la~~l~~~G~~-v~~~d~~~~~~~l~~~~~ 48 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHE-VDILDANVPPEELVEALR 48 (121)
T ss_dssp HHHHHHHHHHHTTBE-EEEEESSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCe-EEEECCCCCHHHHHHHHh
Confidence 346788889999998 6655 23345555554
No 129
>PLN02591 tryptophan synthase
Probab=47.12 E-value=51 Score=21.00 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP 86 (93)
.++|+++=.+-.+++.+.+..+.|||+.+.-.
T Consensus 188 ~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 188 TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 78999987777888898888899999988754
No 130
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=46.59 E-value=22 Score=25.51 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee--ccch
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET--CQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~--kP~~ 88 (93)
-.+..++.|+.+.-.-..-+.++|+|+|+. ||.+
T Consensus 462 MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEd 497 (681)
T COG2216 462 MGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPED 497 (681)
T ss_pred cCCeEEEEeCCCHHHHHHHHHHhCchhhhhcCChHH
Confidence 567889999987776666678999999985 4554
No 131
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.53 E-value=44 Score=19.51 Aligned_cols=29 Identities=21% Similarity=0.089 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|+++..+..+.+....++..|++.++.
T Consensus 172 ~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 172 RVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCcEEEECCCCCHHHHHHHHHhccceeec
Confidence 67898888777678888899999988753
No 132
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=46.13 E-value=41 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcCCCceEEeCCHHHHHHHh
Q 042991 7 DRKVIERLLTISSSRDLYCSCSGRRALQFL 36 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~ 36 (93)
..+.+.+.+++.|+. +.++.+.++|.+.+
T Consensus 52 ~l~~~~~~~~~~g~~-v~~a~t~~eA~~~v 80 (432)
T TIGR00273 52 YLDQLKENVTQRGGH-VYYAKTAEEARKII 80 (432)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHH
Confidence 344555666778899 99999999998885
No 133
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=44.51 E-value=57 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcC-Ccceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDG-AEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~g-a~d~l~ 84 (93)
..+|++.-.+-.+.++..+.++.| ++.++.
T Consensus 189 ~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 189 VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 468999888888999999999988 988765
No 134
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=44.28 E-value=53 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||.-.+-.+..++.+++..||+....
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 69999888888899999999999998543
No 135
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=43.95 E-value=84 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCC------HHHHHHHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEII------LVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~------~~~~~~~~~~ga~d~l~kP 86 (93)
..+|++.++-.+. .....++.++|++..+...
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECC
Confidence 4778887776554 5566677889998877664
No 136
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.88 E-value=65 Score=19.71 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+++.-+-...+...++++.|++.+..-
T Consensus 155 ~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4789998777666688888899999887654
No 137
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.98 E-value=74 Score=19.91 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+++--+-.+.+++.++++.|++..+.-
T Consensus 191 ~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 191 TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 6789998777888999999999999987763
No 138
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=41.71 E-value=60 Score=19.15 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCccc
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ 42 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~ 42 (93)
.+.++-+++||+ +..++.+.-|.+.++...+.
T Consensus 77 ~l~~lae~~g~~-v~i~~Ggt~ar~~ik~~~p~ 108 (158)
T PF01976_consen 77 DLKKLAEKYGYK-VYIATGGTLARKIIKEYRPK 108 (158)
T ss_pred HHHHHHHHcCCE-EEEEcChHHHHHHHHHhCCC
Confidence 345566789999 99999999999998755543
No 139
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.65 E-value=68 Score=20.57 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|||...+-.+.+...+++.+||+.+
T Consensus 230 ~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 230 VEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 4789998888788999999999998764
No 140
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=41.47 E-value=40 Score=21.54 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcC-Ccceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDG-AEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~g-a~d~l~kP~ 87 (93)
.++|+|+=.+-...+...+++..| ++..|.-.+
T Consensus 198 v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsi 231 (256)
T COG0107 198 VNIPVIASGGAGKPEHFVEAFTEGKADAALAASI 231 (256)
T ss_pred CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhh
Confidence 899999888888999999999877 776665444
No 141
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=40.96 E-value=63 Score=21.15 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=42.9
Q ss_pred HHHHhhcCCCceEEeCCHHHHHHHhccCcc-------------cCCCchHHHhhhh--cCCcEEEEcCCCCHHHHHHHHH
Q 042991 12 ERLLTISSSRDLYCSCSGRRALQFLGLDEE-------------QSANGFDVRTIYS--REIPVVIMSPEIILVRIDRYLE 76 (93)
Q Consensus 12 ~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-------------~~~~~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~ 76 (93)
...++..|...+..+.+.++|....+..-. ...+.++++.... ..+|||.--+-.+.....+++.
T Consensus 102 i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~ 181 (307)
T TIGR03151 102 IPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA 181 (307)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH
Confidence 344555565434456777777665432110 0011223333222 4689998777788888889999
Q ss_pred cCCcceee
Q 042991 77 DGAEDSET 84 (93)
Q Consensus 77 ~ga~d~l~ 84 (93)
.||+....
T Consensus 182 ~GA~gV~i 189 (307)
T TIGR03151 182 LGAEAVQM 189 (307)
T ss_pred cCCCEeec
Confidence 99988654
No 142
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.92 E-value=73 Score=19.67 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+.+.+..+.|++.++.
T Consensus 192 ~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 192 VDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 578999887778788888888899998765
No 143
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=39.67 E-value=17 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.9
Q ss_pred HHHHHHcCCcceeeccchhhh
Q 042991 71 IDRYLEDGAEDSETCQMWARL 91 (93)
Q Consensus 71 ~~~~~~~ga~d~l~kP~~~~~ 91 (93)
+.+|++.|..+|. ||++=+|
T Consensus 105 iE~Ay~~G~~~~~-KPISChL 124 (183)
T PF11307_consen 105 IEKAYREGKIDFK-KPISCHL 124 (183)
T ss_pred HHHHHHcCCCCCC-CCceEee
Confidence 4568999999988 9998544
No 144
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.66 E-value=93 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHcCCcceeeccc
Q 042991 65 EIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
-.+.+....+.++|| +|++-|.
T Consensus 74 Vl~~~~a~~a~~aGA-~FivsP~ 95 (212)
T PRK05718 74 VLNPEQLAQAIEAGA-QFIVSPG 95 (212)
T ss_pred ccCHHHHHHHHHcCC-CEEECCC
Confidence 455677778899998 4555554
No 145
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.61 E-value=71 Score=21.29 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++..||+.+..
T Consensus 200 ~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 200 ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 578999888888899999999999987654
No 146
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=38.87 E-value=87 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+++.++++.|++..+.
T Consensus 188 ~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 188 ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 678999888888999999999999998775
No 147
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.76 E-value=1e+02 Score=19.55 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc--c-----CCCchHHHhhhh-cCCcEEEEcCCCCHHHHHHHH
Q 042991 6 VDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE--Q-----SANGFDVRTIYS-REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 6 ~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~--~-----~~~~~d~l~~~~-~~~pii~lt~~~~~~~~~~~~ 75 (93)
+....|..+.++.|.. .....-..++++++..-.. . ++..+.++..+. ...|||+=|+..+.+++.+|+
T Consensus 56 e~~~~L~~~~~~~gi~-f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av 132 (241)
T PF03102_consen 56 EQHKELFEYCKELGID-FFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAV 132 (241)
T ss_dssp HHHHHHHHHHHHTT-E-EEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCE-EEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHH
Confidence 4456677777888866 3333333444555532111 1 222223333322 888999888888888777664
No 148
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.31 E-value=79 Score=19.60 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc-CCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLED-GAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~-ga~d~l~ 84 (93)
..+|+++.-+-.+.+.+.++++. |++..+.
T Consensus 192 ~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 192 VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 57899987777888899888887 8987665
No 149
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.92 E-value=85 Score=18.36 Aligned_cols=77 Identities=16% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcCCCceE---EeCCHHHHHHHhccCccc--CCCchHH------------Hhhhh-cCCcEEEEcCCCCH
Q 042991 7 DRKVIERLLTISSSRDLY---CSCSGRRALQFLGLDEEQ--SANGFDV------------RTIYS-REIPVVIMSPEIIL 68 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~---~~~~~~~a~~~~~~~~~~--~~~~~d~------------l~~~~-~~~pii~lt~~~~~ 68 (93)
-.+.+.+.|+..||+ |. ...+.+++.+..-++... .+++++. ++... .++. ++.-+...+
T Consensus 28 gakvia~~l~d~Gfe-Vi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~ 105 (143)
T COG2185 28 GAKVIARALADAGFE-VINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPP 105 (143)
T ss_pred chHHHHHHHHhCCce-EEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE-EeecCccCc
Confidence 346788899999998 44 455778877776333221 2233221 12211 3333 345556666
Q ss_pred HHHHHHHHcCCcceeec
Q 042991 69 VRIDRYLEDGAEDSETC 85 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~k 85 (93)
++..+..+.|++.++..
T Consensus 106 ~d~~~l~~~G~~~if~p 122 (143)
T COG2185 106 GDYQELKEMGVDRIFGP 122 (143)
T ss_pred hhHHHHHHhCcceeeCC
Confidence 66666667999998765
No 150
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=37.68 E-value=67 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||+-.+-.+..++.+++..||+.+-
T Consensus 254 ~~ipIiasGGIr~~~dv~kal~lGAd~V~ 282 (326)
T cd02811 254 PDLPLIASGGIRNGLDIAKALALGADLVG 282 (326)
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 37999988888889999999999998743
No 151
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=37.41 E-value=66 Score=18.94 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
...++.+.|...+++...+.++.|++..++
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 577888888765477888889999988765
No 152
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.22 E-value=1.3e+02 Score=20.43 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHH-cCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLE-DGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~-~ga~d~l~ 84 (93)
+++|+++--.=...++..++++ .|++++++
T Consensus 202 ~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 202 PDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred cCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 6688887777677888888888 89998875
No 153
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=37.16 E-value=85 Score=21.14 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||++-.+-.+..++.+++..||+....
T Consensus 275 ~~i~vi~dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 275 HRVPIIFDSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 469999888888999999999999997543
No 154
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.59 E-value=97 Score=19.63 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHH-HcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYL-EDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~-~~ga~d~l~ 84 (93)
..+|+|+--+-.+.++..+++ +.|+++.+.
T Consensus 195 ~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 195 LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 789999877888889999888 789998664
No 155
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=36.56 E-value=86 Score=18.64 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|+++ ++.-+.+...++++.|++.++.-
T Consensus 157 ~~~~i~~-~GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 157 LGVKVAV-AGGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred cCCCEEE-ECCcCHHHHHHHHhcCCCEEEEe
Confidence 5678875 45556888888999999987653
No 156
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=36.37 E-value=80 Score=21.45 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++|||.=-+-.+..++.+++..||+.+..
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 58999877778899999999999998654
No 157
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=35.59 E-value=41 Score=14.01 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHcCCcceee
Q 042991 66 IILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~ 84 (93)
+......+++++|+|...+
T Consensus 8 d~~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 8 DKPASWRELLDLGVDGIMT 26 (30)
T ss_dssp -SHHHHHHHHHHT-SEEEE
T ss_pred CCHHHHHHHHHcCCCEeeC
Confidence 4566777889999988765
No 158
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.58 E-value=58 Score=20.95 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.++|.|+++........ ++++...-+||.-|-+.
T Consensus 86 ~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 86 AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKADP 119 (277)
T ss_pred cCCCEEEEcCCCccchH-HHHHhcCCcEEEEecCc
Confidence 68899999987776654 77888778888876653
No 159
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=35.20 E-value=90 Score=20.43 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCHHH----HHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVR----IDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~----~~~~~~~ga~d~l~ 84 (93)
.++|-|++|+.-+... +.-|+++||+++|.
T Consensus 229 ~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~ 262 (306)
T COG3684 229 INLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLA 262 (306)
T ss_pred CCCCeEEEecCccHHHhHHHHHHHHHcCCceeEe
Confidence 6899999998766443 33468899999886
No 160
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=35.15 E-value=31 Score=17.75 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=16.7
Q ss_pred CCcHHHHHHHHHHHhhcCCCceEE
Q 042991 2 NDSFVDRKVIERLLTISSSRDLYC 25 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~~v~~ 25 (93)
++.+.....+..++++.||. +..
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfn-I~s 33 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQ-VCS 33 (76)
T ss_pred ECCccHHHHHHHHHhcCCee-eee
Confidence 45666777788888888888 444
No 161
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=34.97 E-value=1.1e+02 Score=21.51 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCceEEeCCHHHHHHHh
Q 042991 9 KVIERLLTISSSRDLYCSCSGRRALQFL 36 (93)
Q Consensus 9 ~~l~~~l~~~~~~~v~~~~~~~~a~~~~ 36 (93)
..+..-+++.|.+ ++++.+.++|.+.+
T Consensus 68 ~~~~~~v~~~Gg~-vy~A~~aedA~~ii 94 (459)
T COG1139 68 EQLEENVTRNGGH-VYFAKDAEDAREII 94 (459)
T ss_pred HHHHHHHHHcCCE-EEEeCCHHHHHHHH
Confidence 4455556678888 99999999999987
No 162
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=34.94 E-value=84 Score=20.26 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|||...+-.+.+...+.+.+||+.+
T Consensus 233 ~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 233 VDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 4789999888889999999999998653
No 163
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.74 E-value=1.3e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.2
Q ss_pred chHHHhhhh--cCCcEEEEcCCC-CHHHHHHHHHcCCcce
Q 042991 46 GFDVRTIYS--REIPVVIMSPEI-ILVRIDRYLEDGAEDS 82 (93)
Q Consensus 46 ~~d~l~~~~--~~~pii~lt~~~-~~~~~~~~~~~ga~d~ 82 (93)
+++.+..+. ..+|+++.-+++ +.+...++.+.|+..+
T Consensus 188 ~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~ki 227 (281)
T PRK06806 188 RFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKI 227 (281)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 445444443 578999887544 5667778889998764
No 164
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=34.70 E-value=82 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||+=.+-....++.+|+.+||+.+..
T Consensus 350 ~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 350 HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 468999888888999999999999998764
No 165
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.63 E-value=83 Score=20.04 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
++|||...+-.+.+...+.+.+||+.+
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 799998888888999999999998764
No 166
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.50 E-value=89 Score=21.56 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||+=.+-....++.+|+.+||+.+..
T Consensus 255 ~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 255 TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 468998777778899999999999998764
No 167
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=34.23 E-value=45 Score=19.76 Aligned_cols=26 Identities=8% Similarity=0.026 Sum_probs=17.9
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHh
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFL 36 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~ 36 (93)
...+.+++.|++ +..+.+.++|.+.+
T Consensus 3 ~f~~~l~~~g~~-v~~~~~~~ea~~~i 28 (189)
T PF02589_consen 3 KFIKNLEANGGE-VHRAKTKEEAAEAI 28 (189)
T ss_dssp HHHHHHHHTT-E-EEEE-T-TTHHHHH
T ss_pred HHHHHHHHCCCE-EEEECCHHHHHHHH
Confidence 455667778888 99999988888876
No 168
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=34.14 E-value=89 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||...+-.+.++..+.+.+||+.+.
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 7999999998999999999999998754
No 169
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=34.11 E-value=32 Score=17.71 Aligned_cols=24 Identities=4% Similarity=-0.115 Sum_probs=17.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCceEEe
Q 042991 2 NDSFVDRKVIERLLTISSSRDLYCS 26 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~~v~~~ 26 (93)
++.+.....+..++++.||. +...
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfN-I~Sl 33 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYY-ISSL 33 (76)
T ss_pred ecCCCHHHHHHHHHhccCcc-eEEE
Confidence 45667777888888888988 5543
No 170
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=34.09 E-value=1.1e+02 Score=18.35 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++||++..+ .+.+.+.++.+.|++.+..
T Consensus 159 ~~~~v~a~GG-I~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 159 GDIPIVAIGG-ITPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCCCEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 4489887655 4677778889999998875
No 171
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.01 E-value=1e+02 Score=19.43 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||..-+-.+.++..+.+++||+.+..
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 58999888888889999999999987643
No 172
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.84 E-value=1.1e+02 Score=18.74 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCHHHHHH-HHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDR-YLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~-~~~~ga~d~l~ 84 (93)
..+|+++.-+-.+.+++.+ ..+.|++..+.
T Consensus 196 ~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 196 VSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 5789998887888888888 56789988764
No 173
>PRK03094 hypothetical protein; Provisional
Probab=33.43 E-value=27 Score=18.29 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCCCceEEeCC
Q 042991 9 KVIERLLTISSSRDLYCSCS 28 (93)
Q Consensus 9 ~~l~~~l~~~~~~~v~~~~~ 28 (93)
..++..|++.||+ |....+
T Consensus 11 s~i~~~L~~~GYe-Vv~l~~ 29 (80)
T PRK03094 11 TDVQQALKQKGYE-VVQLRS 29 (80)
T ss_pred HHHHHHHHHCCCE-EEecCc
Confidence 4578899999999 776554
No 174
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=33.23 E-value=1e+02 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|||..-+-.+.++..+.+..||+.+
T Consensus 233 ~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 233 VDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 4689998888889999999999998863
No 175
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=33.20 E-value=1.5e+02 Score=19.84 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=24.7
Q ss_pred chHHHhhhh---cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 46 GFDVRTIYS---REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 46 ~~d~l~~~~---~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
=+|++++.. +++|+.+..-+++..++..|.+.|.-|
T Consensus 250 YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 250 YLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred HHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 356655443 589999988878777777776666543
No 176
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=33.19 E-value=58 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.++|||...+-.+.++..+.+.+||+-+
T Consensus 243 ~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 243 QDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp TSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred cceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 4799999999999999999999999864
No 177
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.16 E-value=1.1e+02 Score=19.20 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=26.9
Q ss_pred HHhhhhcCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 49 VRTIYSREIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 49 ~l~~~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+.+....+|||..-+-.+.+...+.++.|++.+.
T Consensus 184 ~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 184 KIRDISTELFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred HHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 34444347899988888889999999999988754
No 178
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=32.85 E-value=1e+02 Score=20.59 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|||.-.+-....++.+|+.+||+.+..-
T Consensus 197 ~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 197 ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 5789998888888899999999999986653
No 179
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.46 E-value=1.1e+02 Score=19.22 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc-CCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLED-GAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~-ga~d~l~k 85 (93)
..+|+|+--+-.+.++..++++. |++..+.-
T Consensus 196 ~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 196 VNVPVIASGGAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhCCccEEeEh
Confidence 57899988888888899888874 99887753
No 180
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.35 E-value=90 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCC------HHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEII------LVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~------~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++++-.+. +.....+.++|++..+.
T Consensus 75 ~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 75 NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 3689888776443 55566778999998887
No 181
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=32.32 E-value=96 Score=20.77 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+||+...+-.+..++.+++..||+.+-
T Consensus 260 ~~ipvia~GGI~~~~dv~k~l~~GAd~v~ 288 (352)
T PRK05437 260 PDLPIIASGGIRNGLDIAKALALGADAVG 288 (352)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 47899988888899999999999998753
No 182
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.29 E-value=1.1e+02 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcC-Ccceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDG-AEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~g-a~d~l~ 84 (93)
..+|+++.-+-.+.+++.++++.| ++..+.
T Consensus 198 ~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 198 VKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 678999888889999999999888 888554
No 183
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=32.23 E-value=1.1e+02 Score=19.79 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
++|||...+-.+.++..+.+.+||+.+-
T Consensus 243 ~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 243 EIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 6999999999999999999999998753
No 184
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=32.08 E-value=86 Score=20.75 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||.-.+-.+..++.+++..||+.+-
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalGAd~V~ 281 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALGADAVG 281 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCeeh
Confidence 46899987777889999999999987653
No 185
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=32.03 E-value=75 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCC--ceEEeCCHHHHHHHh
Q 042991 1 LNDSFVDRKVIERLLTISSSR--DLYCSCSGRRALQFL 36 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~--~v~~~~~~~~a~~~~ 36 (93)
|.|++-....+...|...||. +...|.+...++..+
T Consensus 84 VqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~Lsrm 121 (309)
T KOG2663|consen 84 VQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRM 121 (309)
T ss_pred ecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhc
Confidence 467788888999999998987 577788888777644
No 186
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.78 E-value=94 Score=21.07 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||.=-+-.+..++.+|+.+||+.+..
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 58999877778899999999999998654
No 187
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.69 E-value=90 Score=20.94 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCCHHHH----HHHHHcCC--cceee
Q 042991 55 REIPVVIMSPEIILVRI----DRYLEDGA--EDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~----~~~~~~ga--~d~l~ 84 (93)
..+|+|++++..+.+.. ..++++|+ .+++.
T Consensus 240 ~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~ 275 (340)
T PRK12858 240 TDLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLC 275 (340)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhh
Confidence 78999999988765433 34678898 77764
No 188
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.63 E-value=1.2e+02 Score=18.23 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=33.5
Q ss_pred eCCHHHHHHHhccCcc-------cCCCchHHHhhhh---cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 26 SCSGRRALQFLGLDEE-------QSANGFDVRTIYS---REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 26 ~~~~~~a~~~~~~~~~-------~~~~~~d~l~~~~---~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
|.+..++.+..+..-. ....|++.+..+. +++|++.+ +..+.+....+++.|++.+
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvai-GGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPT-GGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEe-CCCCHHHHHHHHHCCCeEE
Confidence 5666666555532110 0122555544332 57898864 5567788888999998764
No 189
>PRK15320 transcriptional activator SprB; Provisional
Probab=31.50 E-value=70 Score=20.14 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=45.2
Q ss_pred HHHHHHHhh--cCCCceEEeCCHHHHHHHhccCcccCC----CchH-H-----HhhhhcCCcEEEEcCCCCHHHHHHHHH
Q 042991 9 KVIERLLTI--SSSRDLYCSCSGRRALQFLGLDEEQSA----NGFD-V-----RTIYSREIPVVIMSPEIILVRIDRYLE 76 (93)
Q Consensus 9 ~~l~~~l~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~----~~~d-~-----l~~~~~~~pii~lt~~~~~~~~~~~~~ 76 (93)
-.++.++++ .+.. |.+|.+...-+..++..+...+ ..-+ + +....++-|+++++.+.-..+..-..-
T Consensus 15 ~a~~~~~~~~~p~~~-~~t~~~l~~ll~~l~~~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv~d~l~~~dr~vl~~ 93 (251)
T PRK15320 15 YALQSIFKQKYPEKC-VKTCNSLTALLHSLSDMPDAGLILALNPHEHVYLFHALLTRLQNRKVLVVADRLYYIDRCVLQY 93 (251)
T ss_pred HHHHHHHHHHCCccc-hhhhhhHHHHHHHHhhCCCceEEEeeCchhHHHHHHHHHHHcCCCceEEEecceeehhhhhhhh
Confidence 345555554 2456 8889988888888864443322 0001 0 233338889999998655444332334
Q ss_pred cCCcceeecc
Q 042991 77 DGAEDSETCQ 86 (93)
Q Consensus 77 ~ga~d~l~kP 86 (93)
.|+-+|+.|-
T Consensus 94 ~g~~~~~l~~ 103 (251)
T PRK15320 94 FGVMDYVLKD 103 (251)
T ss_pred hcchhHHHHH
Confidence 6777777663
No 190
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.28 E-value=1e+02 Score=20.35 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||.--+-.+...+.+++.+||+....
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 68988655667788999999999998765
No 191
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.83 E-value=1.1e+02 Score=17.58 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEeC----CHHHHHHH
Q 042991 3 DSFVDRKVIERLLTISSSRDLYCSC----SGRRALQF 35 (93)
Q Consensus 3 d~~~~~~~l~~~l~~~~~~~v~~~~----~~~~a~~~ 35 (93)
.+....+.+..+|.+.|.. +..|. +.+++.+.
T Consensus 36 rs~~vG~pla~lL~~~gat-V~~~~~~t~~l~~~v~~ 71 (140)
T cd05212 36 RSGIVGAPLQCLLQRDGAT-VYSCDWKTIQLQSKVHD 71 (140)
T ss_pred CCchHHHHHHHHHHHCCCE-EEEeCCCCcCHHHHHhh
Confidence 3445566777777777777 77777 55554433
No 192
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.79 E-value=52 Score=17.20 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCCceEEeCCHH
Q 042991 9 KVIERLLTISSSRDLYCSCSGR 30 (93)
Q Consensus 9 ~~l~~~l~~~~~~~v~~~~~~~ 30 (93)
.-++.+|++.||+ +....+..
T Consensus 11 s~v~~~L~~~Gye-Vv~l~~~~ 31 (80)
T PF03698_consen 11 SNVKEALREKGYE-VVDLENEQ 31 (80)
T ss_pred hHHHHHHHHCCCE-EEecCCcc
Confidence 4578899999999 77766444
No 193
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.21 E-value=1e+02 Score=20.81 Aligned_cols=31 Identities=6% Similarity=-0.125 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|||+=.+-....++.+|+.+||+..+.=
T Consensus 211 ~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 211 LKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 4789999888888899999999999987654
No 194
>PRK07695 transcriptional regulator TenI; Provisional
Probab=30.17 E-value=1.3e+02 Score=18.09 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|++++-+- +++...++.+.|++.+
T Consensus 148 ~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 148 LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 46899976554 7888888899999876
No 195
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=30.08 E-value=84 Score=21.11 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
...|||+ -+--..++...|.++|+++.+....-
T Consensus 222 T~LPIvv-KGilt~eDA~~Ave~G~~GIIVSNHG 254 (363)
T KOG0538|consen 222 TKLPIVV-KGVLTGEDARKAVEAGVAGIIVSNHG 254 (363)
T ss_pred CcCCeEE-EeecccHHHHHHHHhCCceEEEeCCC
Confidence 7789984 45555667788999999998876543
No 196
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=30.01 E-value=1.2e+02 Score=20.67 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee-ccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET-CQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~-kP~ 87 (93)
..+|||+=.+-....++.+++..||+.+.. .|+
T Consensus 282 ~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~ 315 (367)
T TIGR02708 282 KRVPIVFDSGVRRGQHVFKALASGADLVALGRPV 315 (367)
T ss_pred CCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHH
Confidence 468999877778889999999999998543 454
No 197
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.91 E-value=1.1e+02 Score=20.53 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCCH------HHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIIL------VRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~------~~~~~~~~~ga~d~l 83 (93)
.+.|||+.+++..- .....|..+||++.+
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGli 295 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLI 295 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEE
Confidence 67999988877554 455567899999644
No 198
>PLN02535 glycolate oxidase
Probab=29.89 E-value=1.3e+02 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee-eccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE-TCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l-~kP~ 87 (93)
..+|||+-.+-.+..++.+++..||+... -.|+
T Consensus 277 ~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 277 GRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred cCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 47999988888889999999999998743 3344
No 199
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.64 E-value=1.2e+02 Score=17.36 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=21.9
Q ss_pred HHHHHHHHhhcCCCceEE---eCCHHHHHHHhccCc
Q 042991 8 RKVIERLLTISSSRDLYC---SCSGRRALQFLGLDE 40 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~---~~~~~~a~~~~~~~~ 40 (93)
...+..+|+.+||+ |.. ..+.++..+...++.
T Consensus 16 kniv~~~L~~~Gfe-VidLG~~v~~e~~v~aa~~~~ 50 (128)
T cd02072 16 NKILDHAFTEAGFN-VVNLGVLSPQEEFIDAAIETD 50 (128)
T ss_pred HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHcC
Confidence 35778889999999 543 346677777765443
No 200
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=29.43 E-value=1.2e+02 Score=20.98 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|||.=-+-....++.+|+.+||+.+..=
T Consensus 326 ~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 326 SGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788887667788999999999999887653
No 201
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=29.18 E-value=1.8e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=25.3
Q ss_pred CchHHHhhhh--cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 45 NGFDVRTIYS--REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 45 ~~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
.=+|++.+.. ..+|+.+..-+++...+..|.+.|.-|
T Consensus 252 ~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 252 PYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred hHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 3456655443 578999888888887777777766544
No 202
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=28.83 E-value=1.5e+02 Score=18.35 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCceEEeC---CHHHHHHHhccC
Q 042991 8 RKVIERLLTISSSRDLYCSC---SGRRALQFLGLD 39 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~---~~~~a~~~~~~~ 39 (93)
...+..+|+..||+ +.... ..++..+.+.+.
T Consensus 105 ~~iv~~~l~~~G~~-Vi~LG~~vp~e~~v~~~~~~ 138 (213)
T cd02069 105 KNLVGVILSNNGYE-VIDLGVMVPIEKILEAAKEH 138 (213)
T ss_pred HHHHHHHHHhCCCE-EEECCCCCCHHHHHHHHHHc
Confidence 35667788889999 66655 355666665433
No 203
>PLN02626 malate synthase
Probab=28.51 E-value=63 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.7
Q ss_pred EcCCCCHHHHHHHHHcCCcceee
Q 042991 62 MSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 62 lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+|+..+.++..+|+++||..|+.
T Consensus 95 ItgP~drkm~inalNSga~~~ma 117 (551)
T PLN02626 95 ITGPVERKMVINALNSGAKVFMA 117 (551)
T ss_pred ecCCCcHHHHHHHHcCCCCEEEe
Confidence 57888899999999999999986
No 204
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=28.06 E-value=1.5e+02 Score=18.07 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHHhhcC--CCceEEeCCHHHHHHHhc
Q 042991 2 NDSFVDRKVIERLLTISS--SRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~--~~~v~~~~~~~~a~~~~~ 37 (93)
..++..++.++.++...| |. +....+.+++++.++
T Consensus 38 ~~~~~q~~~v~~I~~~WGg~fn-v~~~~s~~~~i~~~k 74 (176)
T PRK03958 38 SNDEHVKESVEDIVERWGGPFE-VEVTKSWKKEIREWK 74 (176)
T ss_pred cCcHHHHHHHHHHHHhcCCceE-EEEcCCHHHHHHHHH
Confidence 456778888999998876 66 999999999999886
No 205
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=28.05 E-value=48 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.++|.|++|....... .++++...-+||.-|.+.
T Consensus 85 ~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 85 KGIPCIVISDAPTKKA-KDALEEEGFGYIIVKADP 118 (276)
T ss_dssp SSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS-
T ss_pred CCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecCc
Confidence 8999999998666554 567888888998877664
No 206
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=27.99 E-value=1.5e+02 Score=18.31 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+++=-+-.+.++..+..+.|++..+.-
T Consensus 183 ~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 183 SEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 6789887666788888888888999987754
No 207
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=27.93 E-value=1.2e+02 Score=16.92 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCCceEEeCCHHHHHHHhc
Q 042991 7 DRKVIERLLTISSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~ 37 (93)
+|+.++.+|+.. ...+++..+|+..++
T Consensus 55 VRE~vR~A~~~~----p~~f~~l~eAl~~~~ 81 (110)
T PF04895_consen 55 VRENVRKAMKGK----PEKFETLEEALEYVS 81 (110)
T ss_pred HHHHHHHHHhCC----CcccCCHHHHHHHHH
Confidence 567777777754 345889999998885
No 208
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=27.83 E-value=25 Score=20.51 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=12.8
Q ss_pred HcCCcceeeccchhhh
Q 042991 76 EDGAEDSETCQMWARL 91 (93)
Q Consensus 76 ~~ga~d~l~kP~~~~~ 91 (93)
..|+.||+.+|+...+
T Consensus 154 ~~G~EdFviePfEQda 169 (170)
T COG4396 154 VSGVEDFVIEPFEQDA 169 (170)
T ss_pred eccchhheecchhhhc
Confidence 4689999999997654
No 209
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=27.80 E-value=1.3e+02 Score=17.85 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
+.|++ +.+..+.+.+.++.+.|++.++.-
T Consensus 166 ~~pi~-v~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 166 NLLIE-VDGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CeEEE-EECCCCHHHHHHHHHcCCCEEEEC
Confidence 47776 445666777778889999987654
No 210
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=1.5e+02 Score=19.35 Aligned_cols=32 Identities=13% Similarity=-0.000 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~kP 86 (93)
..+|+|+=++.++..+.. .+.+.|++..+.-|
T Consensus 72 grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 72 GRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred CCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 678999878777655554 35688999977653
No 211
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=27.35 E-value=29 Score=19.44 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCC--HHHHHHHH--HcCCcceeeccchhh
Q 042991 55 REIPVVIMSPEII--LVRIDRYL--EDGAEDSETCQMWAR 90 (93)
Q Consensus 55 ~~~pii~lt~~~~--~~~~~~~~--~~ga~d~l~kP~~~~ 90 (93)
..+.++++-=.+. ...+-+++ ..|.-+|+.||-.-|
T Consensus 79 ~G~Q~vALN~Qt~d~~m~ln~g~F~~NG~cGYVLKP~~lR 118 (118)
T PF00387_consen 79 CGCQMVALNFQTPDEPMQLNQGMFRQNGGCGYVLKPEYLR 118 (118)
T ss_dssp TT-SEEEB-TTS-SHHHHHHHHHTTTGGG-SEEE--GGGT
T ss_pred ccCccceeeccCCChhHHHHHhhhccCCCCCeEeCchhhC
Confidence 6777887764433 33333454 458899999997543
No 212
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.34 E-value=1.5e+02 Score=19.59 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+||++...-.+.+...++++.|.-|++
T Consensus 291 v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 291 TKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 57899988777789899999999866654
No 213
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.30 E-value=1.3e+02 Score=19.82 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||..-+-.+.+++.+.+.+||+..-
T Consensus 238 ~~ipIig~GGI~s~~Da~e~l~aGA~~V~ 266 (334)
T PRK07565 238 VGADLAATTGVHDAEDVIKMLLAGADVVM 266 (334)
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCcee
Confidence 47899988888999999999999997643
No 214
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.85 E-value=2e+02 Score=19.29 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=25.0
Q ss_pred chHHHhhhh--cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 46 GFDVRTIYS--REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 46 ~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
=+|++.+.. ..+|+.+..-+++..++..|.+.|.-|
T Consensus 250 YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 287 (320)
T cd04823 250 YLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLD 287 (320)
T ss_pred HHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 356554432 678999988888887777777776544
No 215
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.84 E-value=1.4e+02 Score=18.61 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|++.+-+ .+.+.+.++.++|++++-
T Consensus 163 ~~iPvvAIGG-I~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 163 IEIPCIVQAG-SDLASAVEVAETGAEFVA 190 (221)
T ss_pred CCCCEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 6799998875 466677788899998764
No 216
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=26.50 E-value=1.3e+02 Score=20.06 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
..+|||...+-.+.++..+.+.+||+-
T Consensus 287 ~~ipiig~GGI~~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 287 GRLPIIGVGGISSAQDALEKIRAGASL 313 (335)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence 368999999989999999999999864
No 217
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.34 E-value=57 Score=21.02 Aligned_cols=36 Identities=8% Similarity=-0.126 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchhh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWAR 90 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~ 90 (93)
.+.-+|........+...+|+++|.+=+.=||+..-
T Consensus 68 iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t 103 (342)
T COG0673 68 IDAVYIATPNALHAELALAALEAGKHVLCEKPLALT 103 (342)
T ss_pred CCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCC
Confidence 344444444456678888999999999999998643
No 218
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.28 E-value=1e+02 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.+|||+=.+-....++.+|+.+||+....=
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 389998888888899999999999986653
No 219
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=26.22 E-value=1.4e+02 Score=17.30 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++|+++..+ .+.+.+.++.+.|++.+..
T Consensus 149 ~~~pv~a~GG-i~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 149 VEIPVVAIGG-ITPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCCEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 6788887655 4567777888999987654
No 220
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=26.00 E-value=1.6e+02 Score=18.77 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=24.0
Q ss_pred cCCcEEEEcC-CCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSP-EIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~-~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+++.+.|- .++++...+..+.|+++.++
T Consensus 249 ~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiT 279 (282)
T cd08605 249 SGLELGTYGKLNNDAEAVERQADLGVDGVIV 279 (282)
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHcCCCEEEe
Confidence 6778888884 46778888889999998876
No 221
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=25.92 E-value=1.6e+02 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=20.5
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 58 PVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
|.|.+.+..+++.+.++.+.|++.++.-
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4565777777777777788999876653
No 222
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.71 E-value=1.7e+02 Score=17.99 Aligned_cols=25 Identities=8% Similarity=-0.041 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHcCCcceeeccch
Q 042991 64 PEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 64 ~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+-.+.+...++.++||+-.++.-++
T Consensus 66 TV~~~e~a~~a~~aGA~FivSP~~~ 90 (196)
T PF01081_consen 66 TVLTAEQAEAAIAAGAQFIVSPGFD 90 (196)
T ss_dssp S--SHHHHHHHHHHT-SEEEESS--
T ss_pred eccCHHHHHHHHHcCCCEEECCCCC
Confidence 3466777778888888544443333
No 223
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.70 E-value=1.5e+02 Score=17.77 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=20.5
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 58 PVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+.+.+++..+.+...++++.|++.+..
T Consensus 159 ~~i~v~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 159 ARVAVAGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 345556777888888899999997665
No 224
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=25.69 E-value=1.4e+02 Score=19.63 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
++||+...+-.+.++..+.+.+||+..
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~aGAd~V 306 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIRAGASLV 306 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCHH
Confidence 789999888889999999999998764
No 225
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=25.56 E-value=1e+02 Score=22.06 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=20.4
Q ss_pred EEcCCCCHHHHHHHHHcCCcceee
Q 042991 61 IMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 61 ~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|+..+...+.+|+.+||+.|+.
T Consensus 70 eitgP~d~km~inAlnsgad~~m~ 93 (511)
T TIGR01344 70 EITGPVDRKMVINALNAGAKVFMA 93 (511)
T ss_pred EEeCCCCHHHHHHHhcCCCCEEEe
Confidence 356667899999999999999886
No 226
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=25.55 E-value=90 Score=14.78 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=8.7
Q ss_pred cCCcEEEEcCCCC
Q 042991 55 REIPVVIMSPEII 67 (93)
Q Consensus 55 ~~~pii~lt~~~~ 67 (93)
.-+|||+.+.-..
T Consensus 22 ~~~PVVFTS~Lg~ 34 (58)
T PF08415_consen 22 AVMPVVFTSMLGV 34 (58)
T ss_pred CcCCEEEeCCCCC
Confidence 6679997665433
No 227
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.52 E-value=1.4e+02 Score=19.90 Aligned_cols=27 Identities=11% Similarity=0.040 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.+||+...+-.+.++..+.+.+||+.+
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 789999999899999999999998754
No 228
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=25.35 E-value=1.5e+02 Score=19.43 Aligned_cols=28 Identities=11% Similarity=-0.157 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.++|||...+-.+.++..+.+.+||+-.
T Consensus 240 ~~ipIig~GGI~s~~da~e~i~aGA~~V 267 (310)
T PRK02506 240 PSIQIIGTGGVKTGRDAFEHILCGASMV 267 (310)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 4799999999999999999999999753
No 229
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=25.21 E-value=2.2e+02 Score=19.14 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=24.4
Q ss_pred chHHHhhhh--cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 46 GFDVRTIYS--REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 46 ~~d~l~~~~--~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
=+|++.+.. .++|+.+..-+++..++..|.+.|.-|
T Consensus 254 YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 254 YLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred HHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 356554433 788999888777777777766666543
No 230
>PRK08999 hypothetical protein; Provisional
Probab=25.10 E-value=2e+02 Score=18.57 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=21.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.++|++++-+ .+.+.+....+.|++++-
T Consensus 279 ~~~Pv~AiGG-I~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 279 VPLPVYALGG-LGPGDLEEAREHGAQGIA 306 (312)
T ss_pred CCCCEEEECC-CCHHHHHHHHHhCCCEEE
Confidence 6789999876 466677778899998753
No 231
>PRK10799 metal-binding protein; Provisional
Probab=24.68 E-value=1.6e+02 Score=18.52 Aligned_cols=28 Identities=18% Similarity=-0.061 Sum_probs=18.4
Q ss_pred EEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 60 VIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 60 i~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
|.+.+.+.......+.+.|+|-||+--+
T Consensus 168 VAi~~GsG~~~i~~a~~~gaD~~ITGd~ 195 (247)
T PRK10799 168 VAWCTGGGQSFIDSAARFGVDAFITGEV 195 (247)
T ss_pred EEEECCchHHHHHHHHHcCCCEEEECCc
Confidence 3343434455667778889999987544
No 232
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=24.63 E-value=1.7e+02 Score=17.70 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCceEEeC---CHHHHHHHhccC
Q 042991 8 RKVIERLLTISSSRDLYCSC---SGRRALQFLGLD 39 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~---~~~~a~~~~~~~ 39 (93)
...+..+|+..||+ +.... ..++..+.+...
T Consensus 101 ~~~v~~~l~~~G~~-vi~LG~~vp~e~~v~~~~~~ 134 (197)
T TIGR02370 101 KNIVVTMLRANGFD-VIDLGRDVPIDTVVEKVKKE 134 (197)
T ss_pred HHHHHHHHHhCCcE-EEECCCCCCHHHHHHHHHHc
Confidence 35677788889999 66544 345555555433
No 233
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=24.49 E-value=2.8e+02 Score=20.11 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
++.+|++-+ .+++......+.|++..+.--+
T Consensus 490 p~~~IiaRa--~~~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 490 PHLHILARA--RGRVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred CCCeEEEEe--CCHHHHHHHHhCCCCEEEccHH
Confidence 777777655 3445555567889987765433
No 234
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.23 E-value=1.1e+02 Score=15.55 Aligned_cols=23 Identities=4% Similarity=-0.126 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcCCCceEEeCCH
Q 042991 6 VDRKVIERLLTISSSRDLYCSCSG 29 (93)
Q Consensus 6 ~~~~~l~~~l~~~~~~~v~~~~~~ 29 (93)
.....+...|++.||. +...++-
T Consensus 53 ~~~~~i~~~L~~~G~~-~~~~~~~ 75 (85)
T cd04906 53 EELAELLEDLKSAGYE-VVDLSDD 75 (85)
T ss_pred HHHHHHHHHHHHCCCC-eEECCCC
Confidence 3344455555666666 5444433
No 235
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=24.19 E-value=1.6e+02 Score=19.39 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+||+...+-.+.+++.+.+.+||+..-
T Consensus 236 ~~ipIig~GGI~s~~Da~e~l~aGA~~Vq 264 (325)
T cd04739 236 VKASLAASGGVHDAEDVVKYLLAGADVVM 264 (325)
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCeeE
Confidence 57899998888999999999999998754
No 236
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.94 E-value=1.9e+02 Score=18.72 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCHHHH----HHHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRI----DRYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~----~~~~~~ga~d~l~kP 86 (93)
..+||++-++..+..+. ..+.+.|++.++.-|
T Consensus 68 g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 68 GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC
Confidence 66899987776555444 345778999976653
No 237
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=23.94 E-value=1.1e+02 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=19.8
Q ss_pred EcCCCCHHHHHHHHHcCCcceee
Q 042991 62 MSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 62 lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+|+..+...+.+|+.+||+.|+.
T Consensus 71 itgP~~~km~~nAlnsgAd~~m~ 93 (511)
T cd00727 71 ITGPVDRKMVINALNSGAKVFMA 93 (511)
T ss_pred EeCCCCHHHHHHHhcCCCCEEEe
Confidence 56777799999999999999884
No 238
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=23.93 E-value=1.6e+02 Score=18.83 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=24.2
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 58 PVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
-++++|++.+.+...++..+|+--.+++
T Consensus 201 ~~l~~SGR~s~emv~Ka~~aGipvivS~ 228 (263)
T PRK00724 201 GALLVSGRASSEMVQKAAMAGIPILVAV 228 (263)
T ss_pred cEEEEeCCchHHHHHHHHHcCCcEEEEc
Confidence 4888999999999999999998777766
No 239
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=23.74 E-value=2e+02 Score=18.27 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceeeccchhh
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWAR 90 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~ 90 (93)
.+.-+.+-+.........|.+.|+|-||+--++.+
T Consensus 167 ~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~ 201 (250)
T COG0327 167 EIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHH 201 (250)
T ss_pred cCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHH
Confidence 45445444445566667778999999999876643
No 240
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.52 E-value=2.1e+02 Score=18.74 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~kP 86 (93)
..+|||+=++..+..+.. .+.+.|++..+.-|
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 668999888765554444 35678999877653
No 241
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=23.46 E-value=1.7e+02 Score=20.11 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||++=.+-....++.+++..||+.+..
T Consensus 299 ~~~~vi~dGGIr~g~Di~KALaLGA~~V~i 328 (381)
T PRK11197 299 GDITILADSGIRNGLDVVRMIALGADTVLL 328 (381)
T ss_pred CCCeEEeeCCcCcHHHHHHHHHcCcCceeE
Confidence 578999888888899999999999988543
No 242
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=23.43 E-value=1.8e+02 Score=17.78 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
...++.+.|- ++.+...++++.|++.+++
T Consensus 199 ~g~~v~~Wtv-n~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 199 RGIPVRLWTV-NEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred CCCEEEEEec-CCHHHHHHHHHCCCCEEeC
Confidence 5778887775 5677778889999998876
No 243
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=23.37 E-value=1.8e+02 Score=17.54 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+.+-++|++.++....++-+.|+..+.
T Consensus 50 ~Gi~vAIITGr~s~ive~Ra~~LGI~~~~ 78 (170)
T COG1778 50 SGIKVAIITGRDSPIVEKRAKDLGIKHLY 78 (170)
T ss_pred cCCeEEEEeCCCCHHHHHHHHHcCCceee
Confidence 77788889999999999999999987554
No 244
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=23.25 E-value=1.7e+02 Score=20.60 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+|.=.+-....++.+|+.+||+.+..
T Consensus 330 ~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 330 YGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 467888766778899999999999988664
No 245
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=23.23 E-value=1.8e+02 Score=20.00 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||++=.+-....++.+++.+||+.+..
T Consensus 307 ~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 307 DRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 468999777778888999999999988543
No 246
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.16 E-value=1.9e+02 Score=17.58 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc-CCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLED-GAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~-ga~d~ 82 (93)
..+||+..-+-.+.++..+.++. |++.+
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 67899977777788888888887 67764
No 247
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=23.09 E-value=1.7e+02 Score=19.94 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=23.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+||++-.+-.+..++.+++.+||+.+
T Consensus 284 ~~i~viasGGI~~g~Dv~kalaLGAd~V 311 (392)
T cd02808 284 DRVSLIASGGLRTGADVAKALALGADAV 311 (392)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCee
Confidence 3689998777788999999999999875
No 248
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=23.02 E-value=1.4e+02 Score=19.44 Aligned_cols=61 Identities=18% Similarity=0.048 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-cCC-------CchHH---HhhhhcCCcEEEEcCC
Q 042991 4 SFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE-QSA-------NGFDV---RTIYSREIPVVIMSPE 65 (93)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~~~-------~~~d~---l~~~~~~~pii~lt~~ 65 (93)
++.....+..+|....|. +.++.++++.++++..+.. .++ ....+ +..-..-.|+|++...
T Consensus 9 s~~Laqsl~~~L~~dRY~-l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~~~~~~~L~e~g~LLPaVil~~~ 80 (283)
T PF07688_consen 9 SPALAQSLRQWLPGDRYE-LVQVDSPEEFLEFLEQHREQIDCLVLEQSPLLPPLFNQLYEQGILLPAVILGSS 80 (283)
T ss_dssp -HHHHHHHHHHT-STTEE-EEEESSCHHHHHHHCCTTTT-SEEEEETTSTTHHHHHHHHHCT----EEEES--
T ss_pred CHHHHHHHHHHcccCceE-EEEcCcHHHHHHHHHhchhccCEEEEecCCCcHHHHHHHHHcCccccEEEEecC
Confidence 455667788888887888 9999999999999974432 221 11111 2222266788888763
No 249
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=22.94 E-value=45 Score=18.18 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=15.5
Q ss_pred hhcCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 53 YSREIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 53 ~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
+.+..||+++|......... .+-.|+.-++.++.
T Consensus 36 ~RP~~pIiavt~~~~~~r~l-~l~~GV~p~~~~~~ 69 (117)
T PF02887_consen 36 YRPKVPIIAVTPNESVARQL-SLYWGVYPVLIEEF 69 (117)
T ss_dssp T-TSSEEEEEESSHHHHHHG-GGSTTEEEEECSSH
T ss_pred hCCCCeEEEEcCcHHHHhhh-hcccceEEEEeccc
Confidence 33666777777533322111 13445555444433
No 250
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=22.85 E-value=1.6e+02 Score=18.47 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..-.++++|++-+.+.+.++..+|+--.+++
T Consensus 169 ~~~~~l~~SGR~s~emv~Ka~~aGipvivS~ 199 (236)
T PF02634_consen 169 LSDKILLTSGRISSEMVQKAARAGIPVIVSR 199 (236)
T ss_dssp -SSSEEEESS-B-HHHHHHHHHHT-SEEEES
T ss_pred ccCcEEEEcCccCHHHHHHHHHcCCCEEEEc
Confidence 4456888999999999999999998777666
No 251
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.75 E-value=1.9e+02 Score=17.50 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCceEEeC---CHHHHHHHhccCcccCCCchH---------H------Hhhhhc--CCcEEEEcCCCC
Q 042991 8 RKVIERLLTISSSRDLYCSC---SGRRALQFLGLDEEQSANGFD---------V------RTIYSR--EIPVVIMSPEII 67 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~---~~~~a~~~~~~~~~~~~~~~d---------~------l~~~~~--~~pii~lt~~~~ 67 (93)
...+..+|+..||+ +.... +.++..+.+....+ ++.++- + ++...+ +++|++=-..-+
T Consensus 99 ~~~v~~~l~~~G~~-vi~lG~~~p~~~l~~~~~~~~~-d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 99 KNLVATMLEANGFE-VIDLGRDVPPEEFVEAVKEHKP-DILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHcCC-CEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 45677888899999 66543 45666666654332 221111 1 222213 566665443333
Q ss_pred HHHHHHHHHcCCcceeecc
Q 042991 68 LVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP 86 (93)
.+ -+-+.|||.|-.-.
T Consensus 177 ~~---~~~~~GaD~~~~da 192 (201)
T cd02070 177 QE---FADEIGADGYAEDA 192 (201)
T ss_pred HH---HHHHcCCcEEECCH
Confidence 32 35577998886543
No 252
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.69 E-value=97 Score=14.13 Aligned_cols=17 Identities=18% Similarity=-0.083 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhcCCC
Q 042991 5 FVDRKVIERLLTISSSR 21 (93)
Q Consensus 5 ~~~~~~l~~~l~~~~~~ 21 (93)
+..++.+....++.||.
T Consensus 28 ~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 28 EETRERILEAAEELGYR 44 (46)
T ss_dssp HHHHHHHHHHHHHHTB-
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 45566666666666664
No 253
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=22.55 E-value=1.7e+02 Score=18.15 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.++.++.++.......+..+.+.|+..|
T Consensus 27 ~~~~l~aV~K~~~~~~i~~l~~~G~~~f 54 (229)
T TIGR00044 27 SKVKLLAVSKTKPASAIQIAYDAGQRAF 54 (229)
T ss_pred CCeEEEEEECCCCHHHHHHHHHcCCccc
Confidence 4566888887777766666667887665
No 254
>PRK09255 malate synthase; Validated
Probab=22.54 E-value=1.2e+02 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.8
Q ss_pred EEEcCCCCHHHHHHHHHcCCcceee
Q 042991 60 VIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 60 i~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+.+|+..+...+.+|+.+||+.|+.
T Consensus 90 veitgP~~~km~~nAlnsgad~~m~ 114 (531)
T PRK09255 90 VEITGPVDRKMVINALNSGAKVFMA 114 (531)
T ss_pred eEEeCCCCHHHHHHHhcCCCCEEEe
Confidence 4467777799999999999999884
No 255
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=22.43 E-value=2e+02 Score=17.68 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+++.+.|- +++....++++.|++++++
T Consensus 203 ~gl~v~~wTv-n~~~~~~~l~~~gvdgiiT 231 (234)
T cd08570 203 NGKKVFVWTV-NTEEDMRYAIRLGVDGVIT 231 (234)
T ss_pred CCCEEEEEec-CCHHHHHHHHHCCCCEEEe
Confidence 5778887775 4566777888999988876
No 256
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=22.25 E-value=1.3e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc
Q 042991 55 REIPVVIMSPEIILVRIDRYLED 77 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ 77 (93)
..+|.+++|+..+.+...+.++.
T Consensus 51 ~~iPl~iMtS~~T~~~T~~~l~~ 73 (300)
T cd00897 51 VDVPLVLMNSFNTDEDTKKILKK 73 (300)
T ss_pred CCceEEEECCCcchHHHHHHHHH
Confidence 88999999999998888887754
No 257
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=22.25 E-value=1.6e+02 Score=18.53 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 57 IPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 57 ~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.-|.+-+.........+.+.|+|-||+--+.
T Consensus 167 i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k 198 (249)
T TIGR00486 167 VKKVAVVSGSGLSFIMKALREGVDAYITGDLS 198 (249)
T ss_pred eeEEEEEcCchHHHHHHHHHcCCCEEEecCCc
Confidence 33344444445556667888999999875443
No 258
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.21 E-value=2.2e+02 Score=18.62 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+||.+-..+.+.+.+.++++.|++.+..
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~GftSVm~ 105 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVGYTSIMF 105 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 67999999999778888999999977654
No 259
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=21.97 E-value=2.1e+02 Score=18.21 Aligned_cols=31 Identities=6% Similarity=-0.071 Sum_probs=24.3
Q ss_pred cCCcEEEEcC-CCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSP-EIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~-~~~~~~~~~~~~~ga~d~l~k 85 (93)
...++.+.|- .++++...+..+.|+++.++-
T Consensus 244 ~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD 275 (286)
T cd08606 244 SGLVCVSYGVLNNDPENAKTQVKAGVDAVIVD 275 (286)
T ss_pred CCcEEEEECCccCCHHHHHHHHHcCCCEEEEC
Confidence 5778888874 366777788889999998875
No 260
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=21.90 E-value=1.8e+02 Score=19.87 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||...+-.+.++..+.+.+||+.+-
T Consensus 253 ~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 253 GLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred CCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 7899998888899999999999998754
No 261
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=21.81 E-value=1.5e+02 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAED 81 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d 81 (93)
.++|||.=-=-.+.++..+|+++||..
T Consensus 143 t~~piIAGGLi~t~Eev~~Al~aGA~a 169 (181)
T COG1954 143 THIPIIAGGLIETEEEVREALKAGAVA 169 (181)
T ss_pred cCCCEEeccccccHHHHHHHHHhCcEE
Confidence 677887533346677888899999854
No 262
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.81 E-value=1.1e+02 Score=14.52 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=12.0
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q 042991 2 NDSFVDRKVIERLLTISSSR 21 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~ 21 (93)
+|.+-....+..+|.++|+.
T Consensus 9 ~d~pG~La~v~~~l~~~~in 28 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGIN 28 (66)
T ss_pred cCCCChHHHHHHHHHHCCCC
Confidence 34455555666666666666
No 263
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=21.65 E-value=2.3e+02 Score=18.00 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=39.8
Q ss_pred eEEeCCHHHHHHHhccCccc---CC------------CchHHHhhhh-cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 23 LYCSCSGRRALQFLGLDEEQ---SA------------NGFDVRTIYS-REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 23 v~~~~~~~~a~~~~~~~~~~---~~------------~~~d~l~~~~-~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
---|.+.+|++...+..-.. .+ +-++++..+. ...++|.=-..++++...++++.|++....
T Consensus 131 MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 131 MADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred EeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 34467788888775422100 01 1122344433 777888777789999999999999988754
No 264
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=21.50 E-value=2.4e+02 Score=19.02 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCCHHHHHH----HHHcCC--cceee
Q 042991 55 REIPVVIMSPEIILVRIDR----YLEDGA--EDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~----~~~~ga--~d~l~ 84 (93)
.++|.|+||+.-+.+.-.+ |.++|+ ++||.
T Consensus 240 ~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 275 (325)
T TIGR01232 240 THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC 275 (325)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 7899999999877655544 456788 78875
No 265
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=21.35 E-value=1.5e+02 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.027 Sum_probs=18.2
Q ss_pred EEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 60 VIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 60 i~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
|.+.+.........+.+.|+|-||+--+
T Consensus 173 Vav~~GsG~~~i~~a~~~g~D~~ITGd~ 200 (241)
T PF01784_consen 173 VAVCGGSGGSFIEEAAEAGADVYITGDI 200 (241)
T ss_dssp EEEECSSSGGGHHHHHHTTSSEEEESS-
T ss_pred EEEEcccCccHHHHHHhCCCeEEEEccC
Confidence 3444444446666788899999987544
No 266
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=21.30 E-value=3e+02 Score=19.24 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCceEEeCCHH-HHHH-HhccCc---------ccCCCchHH--Hhhhh--cCCcEEEEcCCCCHHHHHH
Q 042991 9 KVIERLLTISSSRDLYCSCSGR-RALQ-FLGLDE---------EQSANGFDV--RTIYS--REIPVVIMSPEIILVRIDR 73 (93)
Q Consensus 9 ~~l~~~l~~~~~~~v~~~~~~~-~a~~-~~~~~~---------~~~~~~~d~--l~~~~--~~~pii~lt~~~~~~~~~~ 73 (93)
.++...|++.|.+ +.+++... +.++ .+++.. ++.+..+|+ +.+.. ..+|.|+=..-..+ ...+
T Consensus 116 ~lf~~tl~~~Gi~-v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atp-yl~r 193 (426)
T COG2873 116 NLFSHTLKRLGIE-VRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATP-YLCR 193 (426)
T ss_pred HHHHHHHHhcCcE-EEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcc-eecc
Confidence 4556667888988 77766433 3333 343221 122233443 44333 77888865555555 5666
Q ss_pred HHHcCCcce
Q 042991 74 YLEDGAEDS 82 (93)
Q Consensus 74 ~~~~ga~d~ 82 (93)
-++.|||=.
T Consensus 194 P~~hGADIV 202 (426)
T COG2873 194 PIEHGADIV 202 (426)
T ss_pred hhhcCCCEE
Confidence 778887644
No 267
>PRK10206 putative oxidoreductase; Provisional
Probab=21.26 E-value=1.1e+02 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHcCCcceeeccchh
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....+...+++++|.+=++=||+..
T Consensus 75 ~~H~~~~~~al~aGkhVl~EKPla~ 99 (344)
T PRK10206 75 DSHFEYAKRALEAGKNVLVEKPFTP 99 (344)
T ss_pred hHHHHHHHHHHHcCCcEEEecCCcC
Confidence 3456777789999999999999864
No 268
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.02 E-value=2.5e+02 Score=18.94 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCCHHHHHH----HHHcCC--cceee
Q 042991 55 REIPVVIMSPEIILVRIDR----YLEDGA--EDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~----~~~~ga--~d~l~ 84 (93)
.++|.|+||+.-+.+.-.+ |.++|+ ++||.
T Consensus 239 ~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 274 (324)
T PRK12399 239 THLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLC 274 (324)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 7999999999877655544 456788 78875
No 269
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.97 E-value=2.1e+02 Score=17.72 Aligned_cols=30 Identities=17% Similarity=-0.118 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.+.|- +++....+..+.|+++.++-
T Consensus 198 ~G~~v~vWTV-n~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 198 GTWKWVIYEV-NEPAEALALAARGVALIETD 227 (229)
T ss_pred CCceEEEEEc-CCHHHHHHHHHhCCcEEEcC
Confidence 5677887775 55666678889999988763
No 270
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.81 E-value=2.3e+02 Score=17.86 Aligned_cols=29 Identities=3% Similarity=-0.102 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcCCCceEEeCCHHHHHHHhc
Q 042991 8 RKVIERLLTISSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~ 37 (93)
.......+++.|+. +.......+..+.+.
T Consensus 50 ~~~~~~af~~lG~~-v~~l~~~~d~~~~l~ 78 (233)
T PRK05282 50 TAKVAEALAPLGIE-VTGIHRVADPVAAIE 78 (233)
T ss_pred HHHHHHHHHHCCCE-EEEeccchhhHHHHh
Confidence 34566677777877 666665555444443
No 271
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=20.72 E-value=2.2e+02 Score=19.36 Aligned_cols=33 Identities=24% Similarity=-0.005 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee-ccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET-CQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~-kP~ 87 (93)
..+|||+=.+-....++.+++..||+.+.. .|+
T Consensus 288 ~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 288 TYKPVLIDSGIRRGSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred hCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 358888777778889999999999988543 344
No 272
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.60 E-value=1.3e+02 Score=14.77 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhcCCC
Q 042991 6 VDRKVIERLLTISSSR 21 (93)
Q Consensus 6 ~~~~~l~~~l~~~~~~ 21 (93)
.....+..+++..||+
T Consensus 37 ~s~~ni~~~~~~~g~~ 52 (69)
T cd03422 37 QSINNIPIDARNHGYK 52 (69)
T ss_pred hHHHHHHHHHHHcCCE
Confidence 3334444444444444
No 273
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.60 E-value=2.4e+02 Score=18.28 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=23.4
Q ss_pred cCCcEEEEcCC-CCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPE-IILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~-~~~~~~~~~~~~ga~d~l~ 84 (93)
..+++.+.|-. ++++......+.|++++++
T Consensus 260 ~Gl~v~~wTv~~n~~~~~~~l~~~GVdgIiT 290 (293)
T cd08572 260 LGLVLFTYGDDNNDPENVKKQKELGVDGVIY 290 (293)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 67788888874 5577777788999999876
No 274
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.47 E-value=1.8e+02 Score=20.52 Aligned_cols=31 Identities=13% Similarity=-0.129 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+|.=-+-..+..+.+++.+||+....-
T Consensus 329 ~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 329 LGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred cCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 4789998888888999999999999876643
No 275
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.46 E-value=68 Score=16.94 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=15.2
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q 042991 2 NDSFVDRKVIERLLTISSSR 21 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~ 21 (93)
++.+-....+..+|.+.||.
T Consensus 10 eN~~GVL~Rit~lFsRRg~N 29 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYN 29 (84)
T ss_pred ECCCCHHHHHHHHHhccCcC
Confidence 45666677788888888887
No 276
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=20.32 E-value=55 Score=18.56 Aligned_cols=65 Identities=8% Similarity=-0.027 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCCCchHHHh-hhhcCCcEEEEc-------CCCCHHHHHHHHHcC
Q 042991 8 RKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSANGFDVRT-IYSREIPVVIMS-------PEIILVRIDRYLEDG 78 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~~~d~l~-~~~~~~pii~lt-------~~~~~~~~~~~~~~g 78 (93)
.......|++.|+. +..++-..+-..++..+.. .++|. .-..-+||+++- .+.+.++..+++..+
T Consensus 29 ~a~~~~~Lk~~gv~-v~RyNL~~~P~aF~~n~~V-----~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~ 101 (123)
T PF06953_consen 29 FAADLDWLKEQGVE-VERYNLAQNPQAFVENPEV-----NQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGIS 101 (123)
T ss_dssp HHHHHHHHHHTT-E-EEEEETTT-TTHHHHSHHH-----HHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--
T ss_pred HHHHHHHHHhCCce-EEEEccccCHHHHHhCHHH-----HHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCC
Confidence 34555666778888 7777655554444432211 11222 111455665544 456666766666544
No 277
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=20.30 E-value=2.3e+02 Score=19.03 Aligned_cols=29 Identities=17% Similarity=-0.010 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||+-.+-.+..++.+++.+||+.+.
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 35898887777889999999999998743
No 278
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=20.19 E-value=62 Score=18.09 Aligned_cols=33 Identities=6% Similarity=-0.001 Sum_probs=20.8
Q ss_pred cCCcEEEEcCCCCH--HHHHHHH--HcCCcceeeccc
Q 042991 55 REIPVVIMSPEIIL--VRIDRYL--EDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~--~~~~~~~--~~ga~d~l~kP~ 87 (93)
....+|.+-=.+.. ..+-.++ ..|--+|+.||-
T Consensus 77 ~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVLKP~ 113 (115)
T smart00149 77 AGCQMVALNFQTPDKPMQLNQGMFRANGGCGYVLKPD 113 (115)
T ss_pred CCceEeEeecCCCChHHHHHhhHhhcCCCCCeEeCCC
Confidence 66677777654443 2333342 347889999994
No 279
>PLN02826 dihydroorotate dehydrogenase
Probab=20.10 E-value=2e+02 Score=19.93 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|||...+-.+.+++.+.+.+||+-+
T Consensus 340 ~~ipIIgvGGI~sg~Da~e~i~AGAs~V 367 (409)
T PLN02826 340 GKIPLVGCGGVSSGEDAYKKIRAGASLV 367 (409)
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCCCee
Confidence 4789999999999999999999999764
No 280
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.05 E-value=2e+02 Score=20.41 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+|.=-+-.+..++.+|+.+||+.+..
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 467877655667889999999999988664
Done!