Query 042991
Match_columns 93
No_of_seqs 101 out of 1863
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.8 1.8E-19 6.2E-24 101.7 10.1 89 1-89 18-120 (134)
2 3gl9_A Response regulator; bet 99.7 5.9E-16 2E-20 85.1 10.7 88 1-89 8-109 (122)
3 3t6k_A Response regulator rece 99.6 2.6E-15 9E-20 83.9 9.8 88 1-89 10-111 (136)
4 3rqi_A Response regulator prot 99.6 2.2E-15 7.5E-20 88.2 9.6 88 1-89 13-112 (184)
5 3f6p_A Transcriptional regulat 99.6 2.4E-15 8.2E-20 82.4 9.2 88 1-89 8-106 (120)
6 2r25_B Osmosensing histidine p 99.6 2.2E-14 7.6E-19 79.8 10.6 88 1-88 8-113 (133)
7 3h1g_A Chemotaxis protein CHEY 99.6 2.2E-14 7.4E-19 79.3 10.3 89 1-89 11-114 (129)
8 1dbw_A Transcriptional regulat 99.6 2.5E-14 8.7E-19 78.6 10.2 88 1-89 9-108 (126)
9 3m6m_D Sensory/regulatory prot 99.6 2.5E-14 8.6E-19 80.5 9.8 87 1-88 20-122 (143)
10 3kto_A Response regulator rece 99.6 1.1E-14 3.7E-19 81.2 8.1 88 1-89 12-113 (136)
11 3crn_A Response regulator rece 99.6 3E-14 1E-18 79.1 9.7 87 1-88 9-107 (132)
12 2lpm_A Two-component response 99.6 1.7E-16 5.8E-21 88.4 0.3 85 1-89 14-109 (123)
13 2pl1_A Transcriptional regulat 99.6 4.8E-14 1.7E-18 76.8 10.1 88 1-89 6-105 (121)
14 3eod_A Protein HNR; response r 99.6 5.3E-14 1.8E-18 77.6 10.1 86 1-87 13-110 (130)
15 1srr_A SPO0F, sporulation resp 99.6 3.5E-14 1.2E-18 77.8 9.1 88 1-89 9-108 (124)
16 3gt7_A Sensor protein; structu 99.6 6.4E-14 2.2E-18 79.6 10.4 88 1-89 13-114 (154)
17 3dzd_A Transcriptional regulat 99.6 1.3E-14 4.4E-19 93.3 8.0 88 1-89 6-105 (368)
18 3r0j_A Possible two component 99.6 3.1E-14 1.1E-18 86.7 9.3 88 1-89 29-128 (250)
19 3snk_A Response regulator CHEY 99.6 1.1E-14 3.6E-19 81.1 6.1 88 1-89 20-120 (135)
20 3lua_A Response regulator rece 99.5 5.3E-14 1.8E-18 78.6 8.5 87 1-88 10-113 (140)
21 3mm4_A Histidine kinase homolo 99.5 7.5E-14 2.6E-18 83.1 9.4 89 1-91 67-186 (206)
22 1zgz_A Torcad operon transcrip 99.5 1.3E-13 4.5E-18 75.2 9.6 88 1-89 8-106 (122)
23 2a9o_A Response regulator; ess 99.5 1.2E-13 4.1E-18 75.0 9.4 88 1-89 7-105 (120)
24 1tmy_A CHEY protein, TMY; chem 99.5 1E-13 3.6E-18 75.4 9.1 88 1-88 8-107 (120)
25 1jbe_A Chemotaxis protein CHEY 99.5 3.2E-13 1.1E-17 74.2 11.1 88 1-89 10-112 (128)
26 3n0r_A Response regulator; sig 99.5 6.9E-15 2.4E-19 91.8 4.8 85 1-89 166-264 (286)
27 1xhf_A DYE resistance, aerobic 99.5 1.7E-13 5.8E-18 74.8 9.7 88 1-89 9-107 (123)
28 3hv2_A Response regulator/HD d 99.5 1.4E-13 4.7E-18 78.1 9.6 87 1-88 20-119 (153)
29 2qzj_A Two-component response 99.5 1.4E-13 4.6E-18 76.8 9.4 87 1-88 10-107 (136)
30 3jte_A Response regulator rece 99.5 2.2E-13 7.5E-18 76.2 10.1 87 1-88 9-109 (143)
31 3cfy_A Putative LUXO repressor 99.5 7.1E-14 2.4E-18 78.1 8.0 87 1-88 10-108 (137)
32 3hdg_A Uncharacterized protein 99.5 1.3E-13 4.3E-18 76.7 8.8 87 1-88 13-111 (137)
33 3luf_A Two-component system re 99.5 8E-14 2.7E-18 85.7 8.6 88 1-89 130-232 (259)
34 3eq2_A Probable two-component 99.5 4.3E-14 1.5E-18 91.1 7.6 87 1-88 11-109 (394)
35 1p6q_A CHEY2; chemotaxis, sign 99.5 2E-13 6.9E-18 75.1 9.3 88 1-89 12-114 (129)
36 3heb_A Response regulator rece 99.5 4.3E-13 1.5E-17 75.9 10.8 88 1-89 10-122 (152)
37 1mb3_A Cell division response 99.5 9.8E-14 3.3E-18 75.8 7.8 87 1-88 7-107 (124)
38 3hzh_A Chemotaxis response reg 99.5 2.3E-13 7.7E-18 77.6 9.5 87 1-88 42-143 (157)
39 2ayx_A Sensor kinase protein R 99.5 7.8E-14 2.7E-18 85.5 8.0 87 1-88 135-233 (254)
40 3hdv_A Response regulator; PSI 99.5 3.4E-13 1.2E-17 74.9 9.9 88 1-89 13-114 (136)
41 1yio_A Response regulatory pro 99.5 7.1E-14 2.4E-18 82.8 7.3 88 1-89 10-109 (208)
42 4e7p_A Response regulator; DNA 99.5 3.7E-13 1.3E-17 76.0 10.0 87 1-88 26-126 (150)
43 3b2n_A Uncharacterized protein 99.5 1.8E-13 6.3E-18 75.9 8.4 87 1-88 9-109 (133)
44 1i3c_A Response regulator RCP1 99.5 5.6E-13 1.9E-17 75.3 10.5 88 1-88 14-123 (149)
45 3kht_A Response regulator; PSI 99.5 7.3E-13 2.5E-17 74.2 10.6 88 1-88 11-114 (144)
46 1ny5_A Transcriptional regulat 99.5 1.3E-13 4.4E-18 89.2 8.3 87 1-88 6-104 (387)
47 3f6c_A Positive transcription 99.5 6.2E-14 2.1E-18 77.6 5.8 87 1-88 7-106 (134)
48 3i42_A Response regulator rece 99.5 6.9E-14 2.3E-18 76.9 5.8 87 1-89 9-109 (127)
49 3q9s_A DNA-binding response re 99.5 2E-13 6.7E-18 83.4 8.3 88 1-89 43-141 (249)
50 1mvo_A PHOP response regulator 99.5 2.1E-13 7.3E-18 75.6 7.8 87 1-88 9-107 (136)
51 1zh2_A KDP operon transcriptio 99.5 3.9E-13 1.3E-17 73.0 8.7 87 1-88 7-104 (121)
52 1k68_A Phytochrome response re 99.5 7.6E-13 2.6E-17 73.3 10.1 87 1-88 8-117 (140)
53 3grc_A Sensor protein, kinase; 99.5 1.1E-13 3.6E-18 77.3 6.5 87 1-88 12-113 (140)
54 1dcf_A ETR1 protein; beta-alph 99.5 8.8E-13 3E-17 73.2 10.3 87 1-88 13-115 (136)
55 1qkk_A DCTD, C4-dicarboxylate 99.5 6.1E-13 2.1E-17 75.4 9.7 87 1-88 9-107 (155)
56 1w25_A Stalked-cell differenti 99.5 2.2E-13 7.4E-18 89.1 8.3 87 1-88 7-107 (459)
57 2jba_A Phosphate regulon trans 99.5 8.5E-14 2.9E-18 76.4 5.4 87 1-88 8-108 (127)
58 1k66_A Phytochrome response re 99.5 9.9E-13 3.4E-17 73.6 9.8 88 1-89 12-125 (149)
59 3ilh_A Two component response 99.5 1.2E-12 4.2E-17 73.1 9.9 87 1-88 15-125 (146)
60 1kgs_A DRRD, DNA binding respo 99.5 3E-13 1E-17 80.8 7.8 88 1-89 8-107 (225)
61 2hqr_A Putative transcriptiona 99.5 1.4E-12 4.6E-17 78.0 10.5 86 1-88 6-101 (223)
62 2rjn_A Response regulator rece 99.5 1.3E-12 4.3E-17 74.1 9.9 87 1-88 13-112 (154)
63 1dz3_A Stage 0 sporulation pro 99.5 5.5E-13 1.9E-17 73.6 8.1 87 1-88 8-109 (130)
64 2pln_A HP1043, response regula 99.5 1.5E-12 5.1E-17 72.4 9.8 86 1-88 24-119 (137)
65 2qxy_A Response regulator; reg 99.4 1.1E-12 3.9E-17 73.2 9.2 87 1-88 10-107 (142)
66 3c3m_A Response regulator rece 99.4 1E-12 3.5E-17 73.3 8.9 88 1-89 9-110 (138)
67 2qr3_A Two-component system re 99.4 8.1E-13 2.8E-17 73.5 8.4 87 1-88 9-112 (140)
68 3cnb_A DNA-binding response re 99.4 2.5E-12 8.4E-17 71.6 10.0 88 1-88 14-116 (143)
69 3h5i_A Response regulator/sens 99.4 2E-13 6.8E-18 76.4 5.5 86 1-88 11-110 (140)
70 3lte_A Response regulator; str 99.4 1.9E-12 6.4E-17 71.4 9.4 87 1-89 12-112 (132)
71 1a04_A Nitrate/nitrite respons 99.4 9.1E-13 3.1E-17 78.4 8.5 88 1-89 11-112 (215)
72 2qvg_A Two component response 99.4 1.7E-12 5.6E-17 72.5 9.1 88 1-89 13-122 (143)
73 3a10_A Response regulator; pho 99.4 3.8E-13 1.3E-17 72.7 6.3 86 1-89 7-104 (116)
74 3eul_A Possible nitrate/nitrit 99.4 1.4E-12 4.8E-17 73.7 8.9 88 1-88 21-121 (152)
75 2zay_A Response regulator rece 99.4 5E-13 1.7E-17 75.0 6.7 87 1-88 14-114 (147)
76 1s8n_A Putative antiterminator 99.4 4.2E-13 1.4E-17 79.4 6.7 87 1-88 19-117 (205)
77 3cz5_A Two-component response 99.4 2.5E-12 8.5E-17 72.7 9.6 87 1-88 11-111 (153)
78 3nhm_A Response regulator; pro 99.4 8.8E-13 3E-17 72.8 7.5 86 1-89 10-109 (133)
79 4dad_A Putative pilus assembly 99.4 3.8E-13 1.3E-17 75.5 5.7 87 1-88 26-127 (146)
80 3kcn_A Adenylate cyclase homol 99.4 2.2E-12 7.4E-17 72.9 8.8 86 1-88 10-109 (151)
81 2oqr_A Sensory transduction pr 99.4 1.1E-12 3.8E-17 78.7 7.9 86 1-88 10-107 (230)
82 3cg0_A Response regulator rece 99.4 2.3E-12 7.9E-17 71.6 8.7 86 1-88 15-114 (140)
83 3cu5_A Two component transcrip 99.4 9.9E-13 3.4E-17 73.7 7.0 88 1-89 8-110 (141)
84 1ys7_A Transcriptional regulat 99.4 3.7E-13 1.3E-17 80.8 5.3 87 1-88 13-111 (233)
85 2jk1_A HUPR, hydrogenase trans 99.4 4.3E-12 1.5E-16 70.7 8.8 86 1-88 7-105 (139)
86 2gwr_A DNA-binding response re 99.4 1E-12 3.4E-17 79.5 6.3 88 1-89 11-109 (238)
87 3cg4_A Response regulator rece 99.4 3.4E-13 1.2E-17 75.3 3.6 87 1-88 13-113 (142)
88 3n53_A Response regulator rece 99.4 6E-13 2E-17 74.2 4.4 86 1-88 9-108 (140)
89 2qsj_A DNA-binding response re 99.4 4E-12 1.4E-16 71.9 7.6 88 1-88 9-110 (154)
90 3kyj_B CHEY6 protein, putative 99.4 2.2E-12 7.5E-17 72.4 6.3 88 1-88 19-121 (145)
91 3bre_A Probable two-component 99.4 1.4E-12 4.7E-17 82.8 6.0 87 1-88 24-125 (358)
92 3c3w_A Two component transcrip 99.4 1E-12 3.5E-17 78.9 5.1 89 1-89 7-108 (225)
93 2gkg_A Response regulator homo 99.3 3.8E-12 1.3E-16 69.4 7.0 87 1-89 11-112 (127)
94 3luf_A Two-component system re 99.3 1.7E-12 5.8E-17 79.8 5.9 88 1-90 10-108 (259)
95 3eqz_A Response regulator; str 99.3 3.7E-12 1.3E-16 70.3 5.9 87 1-89 9-112 (135)
96 1p2f_A Response regulator; DRR 99.3 1.3E-11 4.6E-16 73.5 8.6 87 1-89 8-104 (220)
97 2j48_A Two-component sensor ki 99.3 1.1E-11 3.9E-16 66.5 6.0 84 1-88 7-104 (119)
98 1dc7_A NTRC, nitrogen regulati 99.3 8.4E-13 2.9E-17 71.9 1.1 88 1-89 9-108 (124)
99 3t8y_A CHEB, chemotaxis respon 99.3 3.5E-11 1.2E-15 69.0 7.8 88 1-88 31-132 (164)
100 2rdm_A Response regulator rece 99.2 5.8E-11 2E-15 65.3 7.5 86 1-89 11-110 (132)
101 2qv0_A Protein MRKE; structura 99.2 6.9E-11 2.4E-15 65.9 7.6 86 1-88 15-113 (143)
102 3sy8_A ROCR; TIM barrel phosph 99.2 1.2E-11 4.1E-16 80.1 4.5 87 1-88 9-114 (400)
103 3c97_A Signal transduction his 99.2 4E-11 1.4E-15 66.8 5.2 85 1-89 16-117 (140)
104 1a2o_A CHEB methylesterase; ba 99.2 1.1E-10 3.7E-15 74.7 7.8 88 1-88 9-110 (349)
105 3klo_A Transcriptional regulat 99.2 1E-11 3.4E-16 74.5 2.1 88 1-89 13-116 (225)
106 2vyc_A Biodegradative arginine 99.2 1.6E-11 5.4E-16 85.0 3.4 88 1-89 6-119 (755)
107 1qo0_D AMIR; binding protein, 99.1 7.5E-11 2.6E-15 69.2 5.4 84 1-89 18-112 (196)
108 2b4a_A BH3024; flavodoxin-like 99.1 6E-11 2E-15 65.9 4.1 83 1-88 21-117 (138)
109 3cwo_X Beta/alpha-barrel prote 98.0 5.6E-06 1.9E-10 49.3 3.1 64 23-86 8-83 (237)
110 1w25_A Stalked-cell differenti 97.7 0.0008 2.7E-08 43.9 10.0 85 2-89 159-257 (459)
111 3q7r_A Transcriptional regulat 96.1 0.0088 3E-07 31.9 3.7 38 55-93 72-109 (121)
112 3n75_A LDC, lysine decarboxyla 95.6 0.0049 1.7E-07 43.0 2.0 79 8-87 19-107 (715)
113 3cwo_X Beta/alpha-barrel prote 93.1 0.14 4.7E-06 30.0 4.0 29 55-83 173-201 (237)
114 1wv2_A Thiazole moeity, thiazo 90.0 2.3 7.8E-05 26.4 9.3 74 12-85 128-216 (265)
115 3tsm_A IGPS, indole-3-glycerol 89.2 2.7 9.2E-05 26.1 7.1 75 10-84 160-248 (272)
116 4a29_A Engineered retro-aldol 73.2 14 0.00047 22.9 7.7 76 10-85 144-233 (258)
117 3q58_A N-acetylmannosamine-6-p 73.1 6.7 0.00023 23.5 4.3 72 13-84 123-209 (229)
118 3igs_A N-acetylmannosamine-6-p 71.6 7.5 0.00026 23.3 4.3 72 13-84 123-209 (232)
119 2lci_A Protein OR36; structura 70.1 9.8 0.00034 19.9 4.5 30 7-37 89-118 (134)
120 1xm3_A Thiazole biosynthesis p 67.9 7.8 0.00027 23.7 3.8 31 55-85 177-207 (264)
121 2w6r_A Imidazole glycerol phos 66.2 9.3 0.00032 22.9 4.0 31 55-85 199-229 (266)
122 2htm_A Thiazole biosynthesis p 65.7 10 0.00035 23.6 4.0 31 55-85 176-207 (268)
123 1ka9_F Imidazole glycerol phos 63.2 13 0.00045 22.1 4.2 30 55-84 195-224 (252)
124 1thf_D HISF protein; thermophI 62.9 14 0.00047 22.0 4.2 30 55-84 194-223 (253)
125 1y0e_A Putative N-acetylmannos 62.1 14 0.00047 21.5 4.1 30 55-84 174-203 (223)
126 2ayx_A Sensor kinase protein R 62.1 5.6 0.00019 23.7 2.4 27 1-28 17-43 (254)
127 1ka9_F Imidazole glycerol phos 61.4 13 0.00046 22.0 4.0 30 55-84 74-103 (252)
128 1h5y_A HISF; histidine biosynt 59.9 16 0.00056 21.4 4.2 30 55-84 197-226 (253)
129 1p0k_A Isopentenyl-diphosphate 58.7 16 0.00054 23.1 4.1 30 55-84 250-279 (349)
130 3o07_A Pyridoxine biosynthesis 58.2 19 0.00066 22.6 4.3 30 55-84 197-228 (291)
131 1yxy_A Putative N-acetylmannos 55.1 20 0.00068 21.1 4.0 29 56-84 186-214 (234)
132 3tha_A Tryptophan synthase alp 53.8 8.4 0.00029 23.6 2.2 36 50-85 82-123 (252)
133 3qja_A IGPS, indole-3-glycerol 50.9 41 0.0014 20.7 9.5 74 11-84 154-241 (272)
134 3hu3_A Transitional endoplasmi 48.8 0.34 1.2E-05 32.4 -4.9 20 70-89 121-140 (489)
135 2yxb_A Coenzyme B12-dependent 48.6 34 0.0012 19.1 4.9 75 8-84 35-127 (161)
136 1rd5_A Tryptophan synthase alp 47.6 33 0.0011 20.6 4.2 31 55-85 200-230 (262)
137 1ypf_A GMP reductase; GUAC, pu 47.4 27 0.00093 22.0 3.9 29 55-83 209-237 (336)
138 1gox_A (S)-2-hydroxy-acid oxid 46.7 30 0.001 22.2 4.0 30 55-84 279-308 (370)
139 2e6f_A Dihydroorotate dehydrog 46.6 30 0.001 21.4 3.9 29 55-83 243-271 (314)
140 1vzw_A Phosphoribosyl isomeras 46.5 22 0.00077 21.0 3.3 30 55-84 189-221 (244)
141 3tdn_A FLR symmetric alpha-bet 46.4 31 0.0011 20.5 3.9 30 55-84 78-107 (247)
142 3iv3_A Tagatose 1,6-diphosphat 46.1 32 0.0011 22.0 4.0 30 55-84 244-279 (332)
143 3kts_A Glycerol uptake operon 45.1 28 0.00096 20.4 3.4 30 55-84 149-178 (192)
144 2ekc_A AQ_1548, tryptophan syn 44.9 17 0.00056 22.2 2.5 31 56-86 94-130 (262)
145 3ip3_A Oxidoreductase, putativ 44.6 33 0.0011 21.4 3.9 35 55-89 66-102 (337)
146 1pii_A N-(5'phosphoribosyl)ant 44.1 70 0.0024 21.4 6.2 75 10-85 148-236 (452)
147 2y88_A Phosphoribosyl isomeras 44.1 26 0.00088 20.6 3.3 30 55-84 192-224 (244)
148 2nli_A Lactate oxidase; flavoe 43.8 32 0.0011 22.2 3.8 29 56-84 284-312 (368)
149 1vcf_A Isopentenyl-diphosphate 43.6 35 0.0012 21.4 3.9 34 55-88 255-289 (332)
150 2z6i_A Trans-2-enoyl-ACP reduc 43.4 41 0.0014 21.1 4.2 30 55-84 161-190 (332)
151 3sgz_A Hydroxyacid oxidase 2; 43.0 38 0.0013 21.8 4.0 30 55-84 271-300 (352)
152 1qo2_A Molecule: N-((5-phospho 42.8 27 0.00094 20.6 3.2 30 55-84 187-222 (241)
153 1jub_A Dihydroorotate dehydrog 42.7 37 0.0012 20.9 3.9 28 56-83 242-269 (311)
154 1eep_A Inosine 5'-monophosphat 42.2 34 0.0012 22.1 3.8 30 55-84 255-284 (404)
155 1f76_A Dihydroorotate dehydrog 41.7 39 0.0013 21.1 3.9 27 56-82 289-315 (336)
156 4fo4_A Inosine 5'-monophosphat 41.5 46 0.0016 21.5 4.3 30 55-84 210-239 (366)
157 1ep3_A Dihydroorotate dehydrog 41.0 33 0.0011 21.0 3.5 29 55-83 240-268 (311)
158 3bo9_A Putative nitroalkan dio 39.9 44 0.0015 21.0 3.9 30 55-84 175-204 (326)
159 2nzl_A Hydroxyacid oxidase 1; 39.6 37 0.0012 22.1 3.6 33 55-87 306-339 (392)
160 3usb_A Inosine-5'-monophosphat 39.4 49 0.0017 22.3 4.3 30 55-84 358-387 (511)
161 3khj_A Inosine-5-monophosphate 39.0 47 0.0016 21.4 4.0 30 55-84 206-235 (361)
162 2gjl_A Hypothetical protein PA 38.7 48 0.0016 20.7 4.0 30 55-84 171-200 (328)
163 4avf_A Inosine-5'-monophosphat 38.5 45 0.0016 22.3 4.0 30 55-84 331-360 (490)
164 3o63_A Probable thiamine-phosp 38.1 33 0.0011 20.7 3.1 29 55-84 190-218 (243)
165 1geq_A Tryptophan synthase alp 37.8 60 0.002 19.1 4.2 31 55-85 190-220 (248)
166 4fxs_A Inosine-5'-monophosphat 37.5 55 0.0019 22.0 4.3 30 55-84 333-362 (496)
167 3ffs_A Inosine-5-monophosphate 37.3 50 0.0017 21.7 3.9 30 55-84 245-274 (400)
168 2yzr_A Pyridoxal biosynthesis 37.2 38 0.0013 21.7 3.3 30 55-84 239-270 (330)
169 4adt_A Pyridoxine biosynthetic 37.0 48 0.0016 20.8 3.7 30 55-84 206-237 (297)
170 3bw2_A 2-nitropropane dioxygen 36.8 59 0.002 20.7 4.2 30 55-84 207-236 (369)
171 2c6q_A GMP reductase 2; TIM ba 36.6 56 0.0019 20.8 4.1 33 55-87 222-255 (351)
172 2v82_A 2-dehydro-3-deoxy-6-pho 36.5 28 0.00096 20.1 2.5 28 56-84 148-175 (212)
173 1vrd_A Inosine-5'-monophosphat 36.4 58 0.002 21.6 4.3 29 55-83 339-367 (494)
174 1yad_A Regulatory protein TENI 36.2 45 0.0015 19.3 3.4 29 55-84 163-191 (221)
175 3tqv_A Nicotinate-nucleotide p 36.0 66 0.0022 20.2 4.2 32 55-88 197-228 (287)
176 2qr6_A IMP dehydrogenase/GMP r 35.5 42 0.0015 21.6 3.4 28 57-84 278-305 (393)
177 1vc4_A Indole-3-glycerol phosp 34.9 24 0.00082 21.4 2.1 28 56-84 208-235 (254)
178 1jcn_A Inosine monophosphate d 34.6 64 0.0022 21.6 4.3 29 55-83 357-385 (514)
179 3zwt_A Dihydroorotate dehydrog 34.6 60 0.0021 20.9 4.0 28 56-83 298-325 (367)
180 1kbi_A Cytochrome B2, L-LCR; f 34.3 47 0.0016 22.5 3.6 29 56-84 403-431 (511)
181 2ixa_A Alpha-N-acetylgalactosa 34.0 97 0.0033 20.2 5.1 34 55-88 90-125 (444)
182 3vkj_A Isopentenyl-diphosphate 34.0 58 0.002 21.0 3.8 30 55-84 266-295 (368)
183 3fkr_A L-2-keto-3-deoxyarabona 33.3 83 0.0028 19.6 4.4 31 55-85 76-110 (309)
184 3oix_A Putative dihydroorotate 33.3 62 0.0021 20.7 3.9 28 56-83 275-302 (345)
185 1i4n_A Indole-3-glycerol phosp 32.8 85 0.0029 19.1 5.7 74 11-85 142-230 (251)
186 3e56_A Putative uncharacterize 32.6 25 0.00086 18.1 1.6 16 69-84 63-78 (113)
187 2h6r_A Triosephosphate isomera 32.2 57 0.002 19.2 3.4 31 55-85 169-199 (219)
188 3mz0_A Inositol 2-dehydrogenas 31.5 95 0.0032 19.3 5.1 33 56-88 66-100 (344)
189 2nv1_A Pyridoxal biosynthesis 31.3 31 0.0011 21.4 2.2 31 55-85 206-238 (305)
190 4ef8_A Dihydroorotate dehydrog 31.1 52 0.0018 21.2 3.2 29 55-83 276-304 (354)
191 3vk5_A MOEO5; TIM barrel, tran 30.7 92 0.0032 19.6 4.2 30 56-85 227-256 (286)
192 1mzh_A Deoxyribose-phosphate a 30.6 71 0.0024 18.9 3.6 26 55-80 174-199 (225)
193 3sr7_A Isopentenyl-diphosphate 29.8 62 0.0021 20.9 3.4 30 55-84 277-306 (365)
194 1qop_A Tryptophan synthase alp 29.8 95 0.0033 18.8 4.3 31 55-85 204-234 (268)
195 1zfj_A Inosine monophosphate d 29.8 80 0.0027 20.9 4.1 33 55-87 335-368 (491)
196 3ceu_A Thiamine phosphate pyro 29.8 46 0.0016 19.3 2.7 28 55-83 143-170 (210)
197 1vhn_A Putative flavin oxidore 28.8 87 0.003 19.5 4.0 29 55-83 182-211 (318)
198 2fyw_A Conserved hypothetical 28.6 54 0.0019 20.0 2.9 32 57-88 177-208 (267)
199 3b0p_A TRNA-dihydrouridine syn 28.4 80 0.0027 20.1 3.8 28 55-83 196-223 (350)
200 1qv9_A F420-dependent methylen 28.4 28 0.00097 21.5 1.6 34 55-89 90-123 (283)
201 1tv5_A Dhodehase, dihydroorota 28.4 76 0.0026 21.1 3.7 27 56-82 373-399 (443)
202 1xky_A Dihydrodipicolinate syn 28.3 1E+02 0.0034 19.2 4.1 31 55-85 80-114 (301)
203 3a5f_A Dihydrodipicolinate syn 28.2 1E+02 0.0035 18.9 4.2 31 55-85 69-103 (291)
204 1nmo_A Hypothetical protein YB 28.2 51 0.0017 19.9 2.7 32 57-88 165-196 (247)
205 3dz1_A Dihydrodipicolinate syn 28.1 92 0.0031 19.4 4.0 32 55-86 75-110 (313)
206 3qfe_A Putative dihydrodipicol 28.1 1E+02 0.0034 19.4 4.2 31 55-85 79-113 (318)
207 3i65_A Dihydroorotate dehydrog 28.0 53 0.0018 21.7 2.9 28 56-83 345-372 (415)
208 2agk_A 1-(5-phosphoribosyl)-5- 28.0 63 0.0022 19.6 3.2 29 56-84 205-235 (260)
209 3flu_A DHDPS, dihydrodipicolin 27.9 1E+02 0.0036 19.0 4.2 33 55-87 75-112 (297)
210 3ec7_A Putative dehydrogenase; 27.9 99 0.0034 19.4 4.1 33 56-88 87-121 (357)
211 3r2g_A Inosine 5'-monophosphat 27.7 85 0.0029 20.3 3.8 27 58-84 201-227 (361)
212 2pcq_A Putative dihydrodipicol 27.7 82 0.0028 19.3 3.6 33 56-88 62-99 (283)
213 2ehh_A DHDPS, dihydrodipicolin 27.6 96 0.0033 19.1 4.0 31 55-85 68-102 (294)
214 3cpr_A Dihydrodipicolinate syn 27.4 98 0.0034 19.2 4.0 31 55-85 84-118 (304)
215 3m5v_A DHDPS, dihydrodipicolin 27.2 1E+02 0.0035 19.1 4.0 30 56-85 77-110 (301)
216 3qze_A DHDPS, dihydrodipicolin 27.2 1.1E+02 0.0037 19.2 4.2 31 55-85 91-125 (314)
217 2wkj_A N-acetylneuraminate lya 26.8 90 0.0031 19.4 3.7 31 55-85 79-113 (303)
218 2r8w_A AGR_C_1641P; APC7498, d 26.6 96 0.0033 19.6 3.9 31 55-85 102-136 (332)
219 3ajx_A 3-hexulose-6-phosphate 26.5 76 0.0026 18.0 3.2 28 56-84 158-185 (207)
220 1wa3_A 2-keto-3-deoxy-6-phosph 26.4 48 0.0016 18.9 2.3 29 55-84 149-177 (205)
221 2l69_A Rossmann 2X3 fold prote 26.3 76 0.0026 16.5 5.2 30 5-35 87-116 (134)
222 2rfg_A Dihydrodipicolinate syn 26.1 97 0.0033 19.2 3.8 31 55-85 68-102 (297)
223 1xi3_A Thiamine phosphate pyro 26.0 55 0.0019 18.6 2.6 29 55-84 161-189 (215)
224 2yxg_A DHDPS, dihydrodipicolin 26.0 95 0.0032 19.1 3.7 31 55-85 68-102 (289)
225 4fb5_A Probable oxidoreductase 25.8 36 0.0012 21.3 1.8 35 55-89 93-129 (393)
226 2zbt_A Pyridoxal biosynthesis 25.8 44 0.0015 20.5 2.2 30 55-84 206-237 (297)
227 1o5k_A DHDPS, dihydrodipicolin 25.7 1E+02 0.0035 19.1 3.9 31 55-85 80-114 (306)
228 2kz7_C Carmil homolog, leucine 25.7 11 0.00038 19.1 -0.4 15 73-87 68-82 (85)
229 3daq_A DHDPS, dihydrodipicolin 25.6 1E+02 0.0036 18.9 3.9 31 55-85 70-104 (292)
230 3l12_A Putative glycerophospho 25.6 83 0.0028 19.4 3.4 30 55-85 267-296 (313)
231 3qvq_A Phosphodiesterase OLEI0 25.5 1.1E+02 0.0038 18.2 4.0 30 55-85 209-238 (252)
232 3na8_A Putative dihydrodipicol 25.5 1.1E+02 0.0039 19.1 4.1 31 55-85 92-126 (315)
233 1f6k_A N-acetylneuraminate lya 25.5 97 0.0033 19.1 3.7 31 55-85 72-106 (293)
234 2hmc_A AGR_L_411P, dihydrodipi 25.3 1.2E+02 0.0042 19.3 4.2 31 55-85 91-125 (344)
235 3s5o_A 4-hydroxy-2-oxoglutarat 25.1 1.2E+02 0.004 18.9 4.0 34 55-88 82-120 (307)
236 3mn1_A Probable YRBI family ph 25.0 98 0.0033 17.3 4.0 31 55-85 61-91 (189)
237 4hyl_A Stage II sporulation pr 24.9 77 0.0026 16.1 3.6 12 25-36 101-112 (117)
238 3si9_A DHDPS, dihydrodipicolin 24.9 1.1E+02 0.0037 19.2 3.8 31 55-85 90-124 (315)
239 3b4u_A Dihydrodipicolinate syn 24.8 1E+02 0.0035 19.0 3.7 31 55-85 71-105 (294)
240 2vc6_A MOSA, dihydrodipicolina 24.4 1.1E+02 0.0038 18.8 3.8 31 55-85 68-102 (292)
241 3gnn_A Nicotinate-nucleotide p 24.3 83 0.0028 19.8 3.2 31 55-87 208-238 (298)
242 2v9d_A YAGE; dihydrodipicolini 24.2 1.1E+02 0.0039 19.4 3.9 31 55-85 99-133 (343)
243 3tak_A DHDPS, dihydrodipicolin 24.2 1.2E+02 0.004 18.7 3.9 31 55-85 69-103 (291)
244 1p4c_A L(+)-mandelate dehydrog 24.0 99 0.0034 19.9 3.6 29 56-84 278-306 (380)
245 1gte_A Dihydropyrimidine dehyd 23.8 1.2E+02 0.0042 22.3 4.4 30 55-84 786-815 (1025)
246 3sy1_A UPF0001 protein YGGS; e 23.6 1E+02 0.0034 18.6 3.4 30 55-84 28-57 (245)
247 2tps_A Protein (thiamin phosph 23.2 58 0.002 18.8 2.3 28 56-84 172-199 (227)
248 3l21_A DHDPS, dihydrodipicolin 22.9 1.2E+02 0.004 18.9 3.7 31 55-85 83-117 (304)
249 3f4w_A Putative hexulose 6 pho 22.9 70 0.0024 18.3 2.6 29 55-84 158-186 (211)
250 3sz8_A 2-dehydro-3-deoxyphosph 22.6 1.5E+02 0.0051 18.5 5.0 34 50-83 189-239 (285)
251 3tjx_A Dihydroorotate dehydrog 22.5 78 0.0027 20.0 2.9 29 55-83 276-304 (354)
252 1vd6_A Glycerophosphoryl diest 22.4 1.2E+02 0.0042 17.6 4.0 30 55-85 185-214 (224)
253 3r79_A Uncharacterized protein 22.4 1.1E+02 0.0037 18.5 3.4 30 55-84 29-58 (244)
254 1to3_A Putative aldolase YIHT; 22.3 1.1E+02 0.0039 19.0 3.6 30 55-84 220-253 (304)
255 1me8_A Inosine-5'-monophosphat 22.3 1.4E+02 0.0046 20.1 4.1 29 56-84 352-380 (503)
256 3vnd_A TSA, tryptophan synthas 22.3 1.4E+02 0.0047 18.3 3.9 32 55-86 205-236 (267)
257 2otd_A Glycerophosphodiester p 22.1 1.3E+02 0.0045 17.7 3.8 30 55-85 206-235 (247)
258 4dpp_A DHDPS 2, dihydrodipicol 21.9 1.4E+02 0.0049 19.3 4.0 31 55-85 127-161 (360)
259 4gqa_A NAD binding oxidoreduct 21.8 51 0.0017 21.1 2.0 35 55-89 95-131 (412)
260 3t6o_A Sulfate transporter/ant 21.7 95 0.0032 15.9 2.9 19 18-37 80-98 (121)
261 3d0c_A Dihydrodipicolinate syn 21.6 1.5E+02 0.0052 18.5 4.1 30 55-85 80-113 (314)
262 3nav_A Tryptophan synthase alp 21.5 1.4E+02 0.0049 18.3 3.9 31 55-85 207-237 (271)
263 3kru_A NADH:flavin oxidoreduct 21.4 1.6E+02 0.0054 18.8 4.1 28 55-82 276-303 (343)
264 3oqb_A Oxidoreductase; structu 21.3 68 0.0023 20.2 2.5 34 55-88 82-117 (383)
265 2p10_A MLL9387 protein; putati 21.1 1.6E+02 0.0056 18.5 4.5 71 16-86 160-260 (286)
266 2cu0_A Inosine-5'-monophosphat 20.8 1.5E+02 0.0051 19.7 4.1 30 55-84 327-356 (486)
267 1vkf_A Glycerol uptake operon 20.7 1.4E+02 0.0047 17.5 3.6 30 55-85 148-177 (188)
268 4h3v_A Oxidoreductase domain p 20.6 43 0.0015 20.9 1.5 35 55-89 74-110 (390)
269 2p9j_A Hypothetical protein AQ 20.4 1.1E+02 0.0038 16.2 4.0 30 55-84 51-80 (162)
270 3l0g_A Nicotinate-nucleotide p 20.1 71 0.0024 20.2 2.3 32 55-88 206-237 (300)
271 3no3_A Glycerophosphodiester p 20.0 1.5E+02 0.005 17.5 3.8 30 55-85 195-224 (238)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.82 E-value=1.8e-19 Score=101.73 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=75.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc---------cCCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE---------QSANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
|||++..+..++.+|+..||+.+..+.+|.+|++.++..++ ++++|++++..+ .+++|||++|+..
T Consensus 18 VDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 18 VDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred EeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 68999999999999999998647789999999999875443 245677764332 2789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.+...+++++|+++|+.||++.
T Consensus 98 ~~~~~~~~~~~Ga~~yl~KP~~~ 120 (134)
T 3to5_A 98 KREQIIEAAQAGVNGYIVKPFTA 120 (134)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCH
T ss_pred CHHHHHHHHHCCCCEEEECCCCH
Confidence 99999999999999999999973
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.69 E-value=5.9e-16 Score=85.11 Aligned_cols=88 Identities=22% Similarity=0.169 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||+ +..+.++.+|++.++...++ +++|++++..+ .+.+|||++|+..
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 8 VDDSAVLRKIVSFNLKKEGYE-VIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred EeCCHHHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 589999999999999999999 99999999999999754432 33566664333 1679999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~~~~Ga~~~l~KP~~~ 109 (122)
T 3gl9_A 87 GEEDESLALSLGARKVMRKPFSP 109 (122)
T ss_dssp SHHHHHHHHHTTCSEEEESSCCH
T ss_pred chHHHHHHHhcChhhhccCCCCH
Confidence 99999999999999999999973
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.65 E-value=2.6e-15 Score=83.89 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +++|++++..+ .+.+|||++|+..
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 10 VDDDDTVAEMLELVLRGAGYE-VRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 589999999999999999999 99999999999998644321 33566653322 2689999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||+..
T Consensus 89 ~~~~~~~~~~~ga~~~l~KP~~~ 111 (136)
T 3t6k_A 89 DISAKIAGFEAGANDYLAKPFEP 111 (136)
T ss_dssp CHHHHHHHHHHTCSEEEETTCCH
T ss_pred CHHHHHHHHhcCcceEEeCCCCH
Confidence 99999999999999999999973
No 4
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.64 E-value=2.2e-15 Score=88.17 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..+..+|+..||. +..+.++.+|++.+....++ +++|++++ ....+.+|||++|+..+.
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 91 (184)
T 3rqi_A 13 IDDNEVFAGTLARGLERRGYA-VRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASI 91 (184)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 589999999999999999999 99999999999999755432 23456653 333388999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||+..
T Consensus 92 ~~~~~a~~~Ga~~~l~KP~~~ 112 (184)
T 3rqi_A 92 ATAVQAVKDGADNYLAKPANV 112 (184)
T ss_dssp HHHHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHHHhCHHHheeCCCCH
Confidence 999999999999999999873
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.64 E-value=2.4e-15 Score=82.38 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+||++..+..++.+|++.||. +..+.++.+|++.++...++ +.+|++++..+ ...+|+|++|+..+..
T Consensus 8 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 8 VDDEKPIADILEFNLRKEGYE-VHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEI 86 (120)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHH
T ss_pred EECCHHHHHHHHHHHHhCCEE-EEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChH
Confidence 589999999999999999999 99999999999998654432 22344443222 2678999999999999
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~ 106 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFST 106 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCH
T ss_pred HHHHHHhCCcceeEcCCCCH
Confidence 88999999999999999973
No 6
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.60 E-value=2.2e-14 Score=79.80 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhcc-----Cccc---------CCCchHHHhhh----hcCCcEEEE
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGL-----DEEQ---------SANGFDVRTIY----SREIPVVIM 62 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-----~~~~---------~~~~~d~l~~~----~~~~pii~l 62 (93)
|||++..+..++.+|+..|+..+..+.++.+|++.+.. ..++ +++|++++..+ .+.+|||++
T Consensus 8 vdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~l 87 (133)
T 2r25_B 8 VEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVAL 87 (133)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEE
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEE
Confidence 58999999999999998887438889999999998854 2221 33566653322 257899999
Q ss_pred cCCCCHHHHHHHHHcCCcceeeccch
Q 042991 63 SPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 63 t~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
|+..+.....++++.|+++|+.||++
T Consensus 88 t~~~~~~~~~~~~~~ga~~~l~KP~~ 113 (133)
T 2r25_B 88 TAFADDSNIKECLESGMNGFLSKPIK 113 (133)
T ss_dssp ESCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred ECCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 99999999999999999999999986
No 7
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.60 E-value=2.2e-14 Score=79.33 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccC-cc---------cCCCchHHHhhhh-----cCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLD-EE---------QSANGFDVRTIYS-----REIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~-~~---------~~~~~~d~l~~~~-----~~~pii~lt~~ 65 (93)
+||++..+..++.+|++.||..+..+.++.+|+..+... .+ ++++|++++..+. +.+|||++|+.
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 11 VDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESC
T ss_pred EeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCC
Confidence 589999999999999999985488999999999887533 22 1335666533221 67899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||+..
T Consensus 91 ~~~~~~~~~~~~g~~~~l~KP~~~ 114 (129)
T 3h1g_A 91 GGKAEVITALKAGVNNYIVKPFTP 114 (129)
T ss_dssp CSHHHHHHHHHHTCCEEEESCCCH
T ss_pred CChHHHHHHHHcCccEEEeCCCCH
Confidence 999999999999999999999973
No 8
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.59 E-value=2.5e-14 Score=78.61 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..||. +..+.++.++++.+....++ +.+|++++ ....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (126)
T 1dbw_A 9 VDDEEPVRKSLAFMLTMNGFA-VKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDV 87 (126)
T ss_dssp EESSHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCH
T ss_pred EcCCHHHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 578999999999999988999 99999999999988644321 23556653 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 88 ~~~~~~~~~ga~~~l~Kp~~~ 108 (126)
T 1dbw_A 88 PMAVEAMKAGAVDFIEKPFED 108 (126)
T ss_dssp HHHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHHhCHHHheeCCCCH
Confidence 899999999999999999863
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.59 E-value=2.5e-14 Score=80.52 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-------cCCcEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-------REIPVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-------~~~pii~lt~ 64 (93)
+||++..+..++.+|++.||. +..+.++++|++.+....++ +++|++++..+. +.+|+|++|+
T Consensus 20 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~ 98 (143)
T 3m6m_D 20 ADDHEANRMVLQRLLEKAGHK-VLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSA 98 (143)
T ss_dssp ECSSHHHHHHHHHHHHC--CE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeC
Confidence 589999999999999999999 99999999999988644321 345666533221 5689999999
Q ss_pred CCCHHHHHHHHHcCCcceeeccch
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
..+.....++++.|+++|+.||+.
T Consensus 99 ~~~~~~~~~~~~~Ga~~~l~KP~~ 122 (143)
T 3m6m_D 99 DVTPEAIRACEQAGARAFLAKPVV 122 (143)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCC
T ss_pred CCCHHHHHHHHHcChhheeeCCCC
Confidence 999999999999999999999997
No 10
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.58 E-value=1.1e-14 Score=81.23 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------C--CCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------S--ANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~--~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||+ +..+.++.+|++.++...++ + ..|++++ +...+.+|||++|+..
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 90 (136)
T 3kto_A 12 VDHQKDARAALSKLLSPLDVT-IQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSS 90 (136)
T ss_dssp ECSCHHHHHHHHHHHTTSSSE-EEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred EcCCHHHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 589999999999999999999 99999999999988654431 2 3344443 3333789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||+..
T Consensus 91 ~~~~~~~~~~~ga~~~l~KP~~~ 113 (136)
T 3kto_A 91 DIPTAVRAMRASAADFIEKPFIE 113 (136)
T ss_dssp CHHHHHHHHHTTCSEEEESSBCH
T ss_pred CHHHHHHHHHcChHHheeCCCCH
Confidence 99999999999999999999863
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.58 E-value=3e-14 Score=79.06 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..||. +..+.++.++++.+....++ +++|++++. ...+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (132)
T 3crn_A 9 VDDDTAILDSTKQILEFEGYE-VEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASL 87 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCH
T ss_pred EeCCHHHHHHHHHHHHHCCce-EEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccH
Confidence 589999999999999988999 99999999999988644321 234565533 33378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~ 107 (132)
T 3crn_A 88 ENSVFSLNAGADAYIMKPVN 107 (132)
T ss_dssp HHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHhccchhhccCCCC
Confidence 89899999999999999986
No 12
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.58 E-value=1.7e-16 Score=88.36 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHHhhhh-cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-~~~pii~lt~~~~~~ 69 (93)
|||++..+..++.+|+..||+ +. .+.|+++|++.++..+++ +++|++++..+. .++|||++|++.+..
T Consensus 14 VdD~~~~~~~l~~~L~~~G~~-v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~ 92 (123)
T 2lpm_A 14 VEDESMIAMLIEDTLCELGHE-VAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKG 92 (123)
T ss_dssp ESSSTTTSHHHHHHHHHHCCC-CCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTS
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHH
Confidence 689999999999999999999 64 789999999999755432 346666633322 789999999987654
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
. +.++|+.+||.||+..
T Consensus 93 ~---~~~~g~~~yl~KP~~~ 109 (123)
T 2lpm_A 93 L---DTRYSNIPLLTKPFLD 109 (123)
T ss_dssp C---CSSSCSCSCBCSSSSH
T ss_pred H---HHhCCCCcEEECCCCH
Confidence 3 3468999999999973
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.58 E-value=4.8e-14 Score=76.76 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++..|+..||. +..+.++.+|+..+....++ +.+|++++ ....+.+|+|++|+..+.
T Consensus 6 vdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 84 (121)
T 2pl1_A 6 VEDNALLRHHLKVQIQDAGHQ-VDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESW 84 (121)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCH
T ss_pred EeCcHHHHHHHHHHHhhcCCE-EEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCH
Confidence 588999999999999999999 99999999999988644321 23455553 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 85 ~~~~~~~~~g~~~~l~kp~~~ 105 (121)
T 2pl1_A 85 QDKVEVLSAGADDYVTKPFHI 105 (121)
T ss_dssp HHHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHHcCccceEECCCCH
Confidence 888999999999999999863
No 14
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.57 E-value=5.3e-14 Score=77.62 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..||. +..+.++.+|++.++...++ +..|++++ +...+.+|+|++|+..+.
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~ 91 (130)
T 3eod_A 13 VEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENM 91 (130)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCH
T ss_pred EeCCHHHHHHHHHHHHhCCce-EEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 588999999999999999999 99999999999998655432 22355543 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccc
Q 042991 69 VRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~ 87 (93)
....++++.|+++|+.||+
T Consensus 92 ~~~~~~~~~g~~~~l~KP~ 110 (130)
T 3eod_A 92 ADIAKALRLGVEDVLLKPV 110 (130)
T ss_dssp HHHHHHHHHCCSEEEESCC
T ss_pred HHHHHHHHcCCCEEEeCCC
Confidence 9989999999999999998
No 15
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.57 E-value=3.5e-14 Score=77.81 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..||. +..+.++.+|+..+....++ +.+|++++ ....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 9 VDDQSGIRILLNEVFNKEGYQ-TFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred EeCCHHHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCch
Confidence 589999999999999988999 99999999999988643321 23455553 333378999999999998
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~~ 108 (124)
T 1srr_A 88 DMIQESKELGALTHFAKPFDI 108 (124)
T ss_dssp HHHHHHHHHTCCCEEESSCCH
T ss_pred HHHHHHHhcChHhhccCCCCH
Confidence 888899999999999999873
No 16
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.57 E-value=6.4e-14 Score=79.64 Aligned_cols=88 Identities=24% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +..|++++..+ .+.+|||++|+..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 13 VEDSPTQAEHLKHILEETGYQ-TEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 589999999999999999999 99999999999998754432 23455553322 1688999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||+..
T Consensus 92 ~~~~~~~~~~~g~~~~l~KP~~~ 114 (154)
T 3gt7_A 92 DPRDVVRSLECGADDFITKPCKD 114 (154)
T ss_dssp SHHHHHHHHHHCCSEEEESSCCH
T ss_pred ChHHHHHHHHCCCCEEEeCCCCH
Confidence 99999999999999999999873
No 17
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.56 E-value=1.3e-14 Score=93.34 Aligned_cols=88 Identities=10% Similarity=-0.015 Sum_probs=74.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..++.+|+..||. +..+.++.+|++.+....++ +++|++++ ....+.+|||++|++.+.
T Consensus 6 VDDd~~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~ 84 (368)
T 3dzd_A 6 VDDEESITSSLSAILEEEGYH-PDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSV 84 (368)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCC
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCH
Confidence 689999999999999999999 99999999999998644432 23455553 333488999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+...++++.||++|+.||++.
T Consensus 85 ~~~~~a~~~Ga~~yl~KP~~~ 105 (368)
T 3dzd_A 85 DTAVKAIKKGAYEFLEKPFSV 105 (368)
T ss_dssp HHHHHHHHHTCCEEEESSCCH
T ss_pred HHHHHHHhcCcceEEeCCCCH
Confidence 999999999999999999973
No 18
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.56 E-value=3.1e-14 Score=86.74 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..++.+|+..||+ +..+.++.+|++.+....++ +++|++++ +...+.+|||++|+..+.
T Consensus 29 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~ 107 (250)
T 3r0j_A 29 VDDEANIVELLSVSLKFQGFE-VYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSL 107 (250)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTH
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 589999999999999999999 99999999999998644321 33566653 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.||++|+.||++.
T Consensus 108 ~~~~~~~~~Ga~~yl~Kp~~~ 128 (250)
T 3r0j_A 108 QDKIAGLTLGGDDYVTKPFSL 128 (250)
T ss_dssp HHHHHHHTSTTCEEEESSCCH
T ss_pred HHHHHHHHcCCcEEEeCCCCH
Confidence 999999999999999999973
No 19
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.55 E-value=1.1e-14 Score=81.11 Aligned_cols=88 Identities=9% Similarity=-0.062 Sum_probs=72.2
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..++.+|+..| |+ +..+.++.+|++.+....++ +..|+++ ++...+.+|+|++|+..+
T Consensus 20 vdd~~~~~~~l~~~L~~~g~~~-v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 20 FSSDPNFKRDVATRLDALAIYD-VRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELT 98 (135)
T ss_dssp ECSCHHHHHHHHHHHHHTSSEE-EEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCC
T ss_pred EcCCHHHHHHHHHHHhhcCCeE-EEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 5899999999999999999 99 99999999999888644432 1234444 333337899999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....++++.|+++|+.||+..
T Consensus 99 ~~~~~~~~~~g~~~~l~KP~~~ 120 (135)
T 3snk_A 99 SEQTRVLVRMNASDWLHKPLDG 120 (135)
T ss_dssp HHHHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHHHcCcHhhccCCCCH
Confidence 9999999999999999999873
No 20
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.54 E-value=5.3e-14 Score=78.59 Aligned_cols=87 Identities=10% Similarity=-0.032 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhcc-Cccc------CCC----chHH---Hhh--hhcCCcEEEEc
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGL-DEEQ------SAN----GFDV---RTI--YSREIPVVIMS 63 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~-~~~~------~~~----~~d~---l~~--~~~~~pii~lt 63 (93)
+||++..+..++.+|+. .||+ +..+.++.+|++.+.. ..++ .++ |+++ ++. ..+.+|||++|
T Consensus 10 vdd~~~~~~~l~~~L~~~~~~~-v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 10 IDYFEYEREKTKIIFDNIGEYD-FIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIAT 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHHCCCE-EEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhccCcc-EEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEe
Confidence 58999999999999998 8999 9999999999999876 4432 233 3343 333 34899999999
Q ss_pred CCCCHHHHHHHHHcCCcceeeccch
Q 042991 64 PEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 64 ~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+..+.....++++.|+++|+.||+.
T Consensus 89 ~~~~~~~~~~~~~~g~~~~l~KP~~ 113 (140)
T 3lua_A 89 KSDNPGYRHAALKFKVSDYILKPYP 113 (140)
T ss_dssp SCCCHHHHHHHHHSCCSEEEESSCC
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCC
Confidence 9999999999999999999999986
No 21
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.54 E-value=7.5e-14 Score=83.12 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccC-------------ccc---------CCCchHHH---hhh-
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLD-------------EEQ---------SANGFDVR---TIY- 53 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~-------------~~~---------~~~~~d~l---~~~- 53 (93)
|||++..+..+..+|+..|| . +..+.++.+|++.+... .++ +++|++++ +..
T Consensus 67 VdDd~~~~~~l~~~L~~~g~~~-v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~ 145 (206)
T 3mm4_A 67 VDDNFISRKVATGKLKKMGVSE-VEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVE 145 (206)
T ss_dssp ECSCHHHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCCCe-eeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhh
Confidence 58999999999999999998 7 99999999999998642 221 33566653 332
Q ss_pred ---hcCCcEEEEcCCC-CHHHHHHHHHcCCcceeeccchhhh
Q 042991 54 ---SREIPVVIMSPEI-ILVRIDRYLEDGAEDSETCQMWARL 91 (93)
Q Consensus 54 ---~~~~pii~lt~~~-~~~~~~~~~~~ga~d~l~kP~~~~~ 91 (93)
.+.+|||++|+.. +.....++++.|+++||.||+. .|
T Consensus 146 ~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~-~L 186 (206)
T 3mm4_A 146 KSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN-QL 186 (206)
T ss_dssp HTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT-TH
T ss_pred hhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH-HH
Confidence 3789999999988 7788888999999999999998 44
No 22
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.54 E-value=1.3e-13 Score=75.18 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=71.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+||++..+..++.+|+..||. +..+.++.++++.+....++ +.+|++++..+ .+.+|+|++|+..+..
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~ 86 (122)
T 1zgz_A 8 VEDEPVTQARLQSYFTQEGYT-VSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRI 86 (122)
T ss_dssp ECSSHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHH
T ss_pred EECCHHHHHHHHHHHHHCCCe-EEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChh
Confidence 588999999999999988999 99999999999888643321 23455553322 3789999999999998
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~ga~~~l~Kp~~~ 106 (122)
T 1zgz_A 87 DRIVGLEMGADDYVTKPLEL 106 (122)
T ss_dssp HHHHHHHHTCSEEEESSCCH
T ss_pred hHHHHHHhCHHHHccCCCCH
Confidence 88899999999999999863
No 23
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.54 E-value=1.2e-13 Score=74.98 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+||++..+..++..|+..||. +..+.++.++++.+....++ +..|++++..+ .+.+|+|++|+..+..
T Consensus 7 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~ 85 (120)
T 2a9o_A 7 VDDEKPISDIIKFNMTKEGYE-VVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEF 85 (120)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHH
T ss_pred EcCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchH
Confidence 588999999999999988999 99999999999988543321 23455553222 2789999999999988
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||+..
T Consensus 86 ~~~~~~~~g~~~~l~Kp~~~ 105 (120)
T 2a9o_A 86 DKVIGLELGADDYVTKPFSN 105 (120)
T ss_dssp HHHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHhCCHhheEeCCCCH
Confidence 88899999999999999863
No 24
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.53 E-value=1e-13 Score=75.39 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++..|+..||..+..+.++.+|++.+....++ +.+|++++. ...+.+|+|++|+..+.
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (120)
T 1tmy_A 8 VDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQ 87 (120)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCH
T ss_pred EcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCH
Confidence 588999999999999988988345799999999988643321 234555533 33378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~ 107 (120)
T 1tmy_A 88 AMVIEAIKAGAKDFIVKPFQ 107 (120)
T ss_dssp HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHhCcceeEeCCCC
Confidence 98899999999999999986
No 25
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.53 E-value=3.2e-13 Score=74.21 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+..|| . +..+.++.++++.+....++ +++|++++..+ .+.+|+|++|+.
T Consensus 10 vdd~~~~~~~l~~~l~~~~~~~-v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 10 VDDFSTMRRIVRNLLKELGFNN-VEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCC-EEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESS
T ss_pred ECCCHHHHHHHHHHHHHcCCcE-EEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecC
Confidence 57899999999999998898 6 99999999999998644321 23455553322 257899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||++.
T Consensus 89 ~~~~~~~~~~~~ga~~~l~KP~~~ 112 (128)
T 1jbe_A 89 AKKENIIAAAQAGASGYVVKPFTA 112 (128)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCH
T ss_pred ccHHHHHHHHHhCcCceeecCCCH
Confidence 999999999999999999999873
No 26
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.53 E-value=6.9e-15 Score=91.79 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=68.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCcc---------c-CCCchHH---HhhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEE---------Q-SANGFDV---RTIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~---------~-~~~~~d~---l~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +. .+.|+.+|++.+....+ + .++|+++ ++.. .++|||++|+..
T Consensus 166 VdD~~~~~~~l~~~L~~~g~~-v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~-~~~piI~lT~~~ 243 (286)
T 3n0r_A 166 IEDEPVIAADIEALVRELGHD-VTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGR-MDVPVIFITAFP 243 (286)
T ss_dssp ECCSHHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHH-TTCCEEEEESCG
T ss_pred EcCCHHHHHHHHHHhhccCce-EEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhc-CCCCEEEEeCCH
Confidence 589999999999999999999 88 99999999999975443 2 2445554 4444 499999999985
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+ ...++++.|+++||.||+..
T Consensus 244 ~--~~~~~~~~G~~~~l~KP~~~ 264 (286)
T 3n0r_A 244 E--RLLTGERPEPTFLITKPFQP 264 (286)
T ss_dssp G--GGCCSSSCCCSSEEESSCCH
T ss_pred H--HHHHHHhCCCcEEEeCCCCH
Confidence 3 45568899999999999973
No 27
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.53 E-value=1.7e-13 Score=74.84 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~~ 69 (93)
+||++..+..++..|+..||. +..+.++.++++.+....++ +.+|++++..+. +.+|+|++|+..+..
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~ 87 (123)
T 1xhf_A 9 VEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEV 87 (123)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHH
T ss_pred EeCCHHHHHHHHHHHhhCCcE-EEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChH
Confidence 588999999999999988999 99999999999988644321 234555533221 789999999999988
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||++.
T Consensus 88 ~~~~~~~~g~~~~l~KP~~~ 107 (123)
T 1xhf_A 88 DKILGLEIGADDYITKPFNP 107 (123)
T ss_dssp HHHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHhcCcceEEeCCCCH
Confidence 88899999999999999863
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.53 E-value=1.4e-13 Score=78.06 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....++ +..|++++ ....+.+|||++|+..+.
T Consensus 20 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 98 (153)
T 3hv2_A 20 VDSQEVILQRLQQLLSPLPYT-LHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDL 98 (153)
T ss_dssp ECSCHHHHHHHHHHHTTSSCE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCH
T ss_pred ECCCHHHHHHHHHHhcccCcE-EEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCH
Confidence 588999999999999999999 99999999999998654421 23455553 333388999999999999
Q ss_pred HHHHHHHHcC-Ccceeeccch
Q 042991 69 VRIDRYLEDG-AEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~g-a~d~l~kP~~ 88 (93)
....++++.| +++|+.||+.
T Consensus 99 ~~~~~~~~~g~~~~~l~KP~~ 119 (153)
T 3hv2_A 99 KLIAKAINEGEIYRYLSKPWD 119 (153)
T ss_dssp HHHHHHHHTTCCSEEECSSCC
T ss_pred HHHHHHHhCCCcceEEeCCCC
Confidence 9999999999 9999999986
No 29
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.53 E-value=1.4e-13 Score=76.85 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~~ 69 (93)
+||++..+..++.+|+..||. +..+.++.++++.+....++ +..|++++..+. ..+|+|++|+..+..
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~ 88 (136)
T 2qzj_A 10 IDGDKDNCQKLKGFLEEKGIS-IDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQ 88 (136)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHH
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHH
Confidence 589999999999999988999 99999999999988644321 224555533322 478999999999998
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||++
T Consensus 89 ~~~~~~~~ga~~~l~KP~~ 107 (136)
T 2qzj_A 89 SILNALNSGGDDYLIKPLN 107 (136)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCcEEEECCCC
Confidence 9999999999999999986
No 30
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.52 E-value=2.2e-13 Score=76.22 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhcc--Cccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGL--DEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+.. ..++ +..|++++ ....+.+|||++|+..
T Consensus 9 vdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 9 IDDESTILQNIKFLLEIDGNE-VLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred EcCCHHHHHHHHHHHHhCCce-EEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCC
Confidence 588999999999999999999 9999999999999862 2221 23455553 3333789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 88 ~~~~~~~~~~~g~~~~l~kp~~ 109 (143)
T 3jte_A 88 DLDNAILAMKEGAFEYLRKPVT 109 (143)
T ss_dssp CHHHHHHHHHTTCSEEEESSCC
T ss_pred CHHHHHHHHHhCcceeEeCCCC
Confidence 9999999999999999999986
No 31
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.52 E-value=7.1e-14 Score=78.10 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +..|++++ ....+.+|+|++|+..+.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~ 88 (137)
T 3cfy_A 10 VEDSTSLAILYKQYVKDEPYD-IFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSV 88 (137)
T ss_dssp ECSCTTHHHHHHHHTTTSSSE-EEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCH
T ss_pred EeCCHHHHHHHHHHHHhcCce-EEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcH
Confidence 578889999999999988999 99999999999988643321 23455553 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 89 ~~~~~~~~~ga~~~l~KP~~ 108 (137)
T 3cfy_A 89 DLAVNLIQKGAEDFLEKPIN 108 (137)
T ss_dssp HHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHCCccEEEeCCCC
Confidence 89899999999999999986
No 32
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.52 E-value=1.3e-13 Score=76.72 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..++. +..+.++.+|++.++...++ +..|++++ +...+.+|||++|+..+.
T Consensus 13 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 91 (137)
T 3hdg_A 13 VEDDTDAREWLSTIISNHFPE-VWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEM 91 (137)
T ss_dssp ECSCHHHHHHHHHHHHTTCSC-EEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCH
T ss_pred EeCCHHHHHHHHHHHHhcCcE-EEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcCh
Confidence 588999999999999998888 99999999999998644321 23455553 333378999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 92 ~~~~~~~~~g~~~~l~kP~~ 111 (137)
T 3hdg_A 92 KYFIKAIELGVHLFLPKPIE 111 (137)
T ss_dssp HHHHHHHHHCCSEECCSSCC
T ss_pred HHHHHHHhCCcceeEcCCCC
Confidence 99999999999999999986
No 33
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.52 E-value=8e-14 Score=85.71 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCc-c---------cCCCchHHHhhhh-----cCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDE-E---------QSANGFDVRTIYS-----REIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~---------~~~~~~d~l~~~~-----~~~pii~lt~~ 65 (93)
|||++..+..+...|+..++. +..+.++.+|++.++... + ++++|++++..+. ..+|||++|+.
T Consensus 130 vDD~~~~~~~l~~~L~~~~~~-v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~ 208 (259)
T 3luf_A 130 VDDSRTSRHRTMAQLRKQLLQ-VHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVS 208 (259)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECS
T ss_pred EeCCHHHHHHHHHHHHHcCcE-EEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEcc
Confidence 589999999999999999999 999999999999986442 2 1345666643322 46899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.||++|+.||++.
T Consensus 209 ~~~~~~~~a~~~Ga~~yl~KP~~~ 232 (259)
T 3luf_A 209 DKRGLSARYLKQGANDFLNQPFEP 232 (259)
T ss_dssp SSSSHHHHHHHTTCSEEEESSCCH
T ss_pred CCHHHHHHHHhcChhheEcCCCCH
Confidence 998888999999999999999973
No 34
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.52 E-value=4.3e-14 Score=91.09 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..++.+|+..||+ +..+.++.+|++.+....++ +++|++++ +...+++|||++|+..+.
T Consensus 11 vdD~~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~ 89 (394)
T 3eq2_A 11 IDDDEVVRESLAAYLEDSNFK-VLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVM 89 (394)
T ss_dssp ECSCHHHHHHHHHHHHHTTEE-EEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHH
T ss_pred EeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCH
Confidence 589999999999999999999 99999999999998654431 34566663 333488999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
+...++++.|+++|+.||+.
T Consensus 90 ~~~~~a~~~ga~~yl~KP~~ 109 (394)
T 3eq2_A 90 SDAVEALRLGAADYLIKPLE 109 (394)
T ss_dssp HHHHHHHHHTCSEECCSSCS
T ss_pred HHHHHHHhcChhhEEECCCC
Confidence 99999999999999999983
No 35
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.51 E-value=2e-13 Score=75.09 Aligned_cols=88 Identities=9% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCcHHHHHHHHHHHhhcCC-CceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSS-RDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~-~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+..|| . +..+.++.++++.+....++ +.+|++++..+ .+.+|+|++|+.
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 12 VDDQVTSRLLLGDALQQLGFKQ-ITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp ECSSHHHHHHHHHHHHTTTCSC-EECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred EcCCHHHHHHHHHHHHHCCCcE-EEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 58899999999999998898 6 88999999999988644321 23456653322 267899999999
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||++.
T Consensus 91 ~~~~~~~~~~~~g~~~~l~KP~~~ 114 (129)
T 1p6q_A 91 GDRALVQKAAALGANNVLAKPFTI 114 (129)
T ss_dssp CCHHHHHHHHHHTCSCEECCCSSH
T ss_pred CCHHHHHHHHHcCCCEEEECCCCH
Confidence 999888899999999999999863
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.51 E-value=4.3e-13 Score=75.86 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhc---------cCccc---------CCCchHH---Hhh--hhc
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLG---------LDEEQ---------SANGFDV---RTI--YSR 55 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~---------~~~~~---------~~~~~d~---l~~--~~~ 55 (93)
|||++..+..++.+|+..|+ . +..+.++.+|++.++ ...++ +..|+++ ++. ..+
T Consensus 10 vddd~~~~~~l~~~L~~~g~~~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~ 88 (152)
T 3heb_A 10 IEDDLGHARLIEKNIRRAGVNNE-IIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTR 88 (152)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCCC-EEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTT
T ss_pred EeCCHHHHHHHHHHHHhCCCcce-EEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhccccc
Confidence 58999999999999999998 6 999999999999984 22211 2345665 333 237
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+|||++|+..+.....++++.|+++|+.||+..
T Consensus 89 ~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~ 122 (152)
T 3heb_A 89 RSPVVILTTTDDQREIQRCYDLGANVYITKPVNY 122 (152)
T ss_dssp TSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSH
T ss_pred CCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCH
Confidence 8999999999999999999999999999999873
No 37
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.51 E-value=9.8e-14 Score=75.82 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|+..++...++ +++|++++..+ .+.+|+|++|+..
T Consensus 7 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 85 (124)
T 1mb3_A 7 VEDNELNMKLFHDLLEAQGYE-TLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFA 85 (124)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC---
T ss_pred EcCCHHHHHHHHHHHHHcCcE-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCC
Confidence 589999999999999999999 99999999999988543321 23456653322 2578999999988
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||++
T Consensus 86 ~~~~~~~~~~~g~~~~l~KP~~ 107 (124)
T 1mb3_A 86 MKGDEERIREGGCEAYISKPIS 107 (124)
T ss_dssp ---CHHHHHHHTCSEEECSSCC
T ss_pred CHHHHHHHHhCCCCEEEeCCCC
Confidence 8888888999999999999986
No 38
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.51 E-value=2.3e-13 Score=77.59 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccC--ccc---------CCCchHH---HhhhhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLD--EEQ---------SANGFDV---RTIYSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~--~~~---------~~~~~d~---l~~~~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+..||. +. .+.++.+|++.+... .++ +..|+++ ++...+.+|||++|+.
T Consensus 42 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 42 VDDSVFTVKQLTQIFTSEGFN-IIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EeCCHHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 588999999999999999999 77 999999999998644 221 2345555 3333488999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||+.
T Consensus 121 ~~~~~~~~~~~~g~~~~l~KP~~ 143 (157)
T 3hzh_A 121 GKEQLVKDCLIKGAKTFIVKPLD 143 (157)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCC
T ss_pred CcHHHHHHHHHcCCCEEEeCCCC
Confidence 99999999999999999999986
No 39
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.51 E-value=7.8e-14 Score=85.47 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|++.||+ +..+.++.+|++.++...++ +++|+++ ++...+.+|||++|+....
T Consensus 135 vdd~~~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~ 213 (254)
T 2ayx_A 135 VDDHPINRRLLADQLGSLGYQ-CKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALA 213 (254)
T ss_dssp EESSHHHHHHHHHHHHHHTSE-EEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTS
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCH
Confidence 589999999999999999999 99999999999998654321 3456665 3333478999999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 214 ~~~~~~~~~G~~~~l~KP~~ 233 (254)
T 2ayx_A 214 EEKQRCLESGMDSCLSKPVT 233 (254)
T ss_dssp HHHHHHHHCCCEEEEESSCC
T ss_pred HHHHHHHHcCCceEEECCCC
Confidence 88899999999999999986
No 40
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.51 E-value=3.4e-13 Score=74.86 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCc-cc---------CCCchHHH---hhh-hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDE-EQ---------SANGFDVR---TIY-SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~---------~~~~~d~l---~~~-~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||+ +..+.++.+++..+.... ++ +..|++++ +.. .+.+|+|++|+..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 13 VDDNAVNREALILYLKSRGID-AVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDT 91 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCC-EEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSC
T ss_pred ECCCHHHHHHHHHHHHHcCce-EEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCC
Confidence 588999999999999999999 999999999999886443 21 23455553 333 3778999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||+..
T Consensus 92 ~~~~~~~~~~~g~~~~l~KP~~~ 114 (136)
T 3hdv_A 92 DVEEAVDVMHLGVVDFLLKPVDL 114 (136)
T ss_dssp CHHHHHHHHHTTCSEEEESSCCH
T ss_pred ChHHHHHHHhCCcceEEeCCCCH
Confidence 99999999999999999999863
No 41
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.50 E-value=7.1e-14 Score=82.78 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....++ +++|++++ ....+.+|||++|+..+.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 88 (208)
T 1yio_A 10 VDDDMSVREGLRNLLRSAGFE-VETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDI 88 (208)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTS
T ss_pred EcCCHHHHHHHHHHHHhCCce-EEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 589999999999999988999 99999999999998654321 33566653 333378999999999888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||+..
T Consensus 89 ~~~~~a~~~Ga~~~l~Kp~~~ 109 (208)
T 1yio_A 89 PMTVRAMKAGAIEFLPKPFEE 109 (208)
T ss_dssp CCCHHHHHTTEEEEEESSCCH
T ss_pred HHHHHHHHCCCcEEEeCCCCH
Confidence 888899999999999999863
No 42
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.50 E-value=3.7e-13 Score=76.03 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHhhcC--CCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISS--SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~--~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..+..+|+..+ +. +..+.++.+|++.+....++ +..|++++ +...+.+|||++|+..
T Consensus 26 vdd~~~~~~~l~~~L~~~~~~~~-v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 26 AEDQSMLRDAMCQLLTLQPDVES-VLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp ECSCHHHHHHHHHHHHTSTTEEE-EEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred EcCCHHHHHHHHHHHHhCCCcEE-EEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 5889999999999999876 66 99999999999998755432 23455553 3333889999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 105 ~~~~~~~~~~~g~~~~l~Kp~~ 126 (150)
T 4e7p_A 105 RAGYFERAVKAGVDAYVLKERS 126 (150)
T ss_dssp CHHHHHHHHHTTCSEEEETTSC
T ss_pred CHHHHHHHHHCCCcEEEecCCC
Confidence 9999999999999999999986
No 43
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.50 E-value=1.8e-13 Score=75.90 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHhhcC--CCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISS--SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~--~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..+ +. +..+.++.++++.+....++ +++|++++ +...+.+|||++|+..
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~~~-v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 9 AEDQNMLRQAMVQLIKLHGDFEI-LADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp ECSCHHHHHHHHHHHHHHSSEEE-EEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred ECCCHHHHHHHHHHHhhCCCcEE-EEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 5889999999999999776 45 78899999999988543321 23456653 3333789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~~~ga~~~l~Kp~~ 109 (133)
T 3b2n_A 88 RPGYFEKAVVNDVDAYVLKERS 109 (133)
T ss_dssp CHHHHHHHHHTTCSEEEETTSC
T ss_pred CHHHHHHHHHcCCcEEEECCCC
Confidence 9999999999999999999986
No 44
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.50 E-value=5.6e-13 Score=75.30 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCC-ceEEeCCHHHHHHHhcc-------Cccc---------CCCchHHHhhhh-----cCCc
Q 042991 1 LNDSFVDRKVIERLLTISSSR-DLYCSCSGRRALQFLGL-------DEEQ---------SANGFDVRTIYS-----REIP 58 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~-------~~~~---------~~~~~d~l~~~~-----~~~p 58 (93)
+||++..+..++.+|+..|+. .+..+.++.+|++.++. ..++ +++|++++..+. +.+|
T Consensus 14 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~p 93 (149)
T 1i3c_A 14 VEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIP 93 (149)
T ss_dssp ECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSC
T ss_pred EECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCe
Confidence 589999999999999988872 28999999999999864 1221 234566533221 5789
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 59 VVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 59 ii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
||++|+..+.....++++.|+++|+.||++
T Consensus 94 iiils~~~~~~~~~~~~~~ga~~~l~KP~~ 123 (149)
T 1i3c_A 94 VVVLTTSHNEDDVIASYELHVNCYLTKSRN 123 (149)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEECCSS
T ss_pred EEEEECCCChHHHHHHHHcCCcEEEECCCC
Confidence 999999999888899999999999999986
No 45
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.49 E-value=7.3e-13 Score=74.20 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCC-ceEEeCCHHHHHHHhccCccc---------CCCchHH---Hhh--hhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSR-DLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTI--YSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~--~~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+..|+. .+..+.++.+|++.+....++ +..|+++ ++. ..+.+|||++|+.
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC
Confidence 588999999999999988876 488899999999998754432 2234554 333 2378999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccc-h
Q 042991 66 IILVRIDRYLEDGAEDSETCQM-W 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~-~ 88 (93)
.+.....++++.|+++|+.||+ .
T Consensus 91 ~~~~~~~~~~~~ga~~~l~Kp~~~ 114 (144)
T 3kht_A 91 VSDDRAKQCMAAGASSVVDKSSNN 114 (144)
T ss_dssp CCHHHHHHHHHTTCSEEEECCTTS
T ss_pred CCHHHHHHHHHcCCCEEEECCCCc
Confidence 9999999999999999999998 5
No 46
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.49 E-value=1.3e-13 Score=89.17 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
|||++..+..++.+|+..||. +..+.++.+|++.+....++ +++|++++ ....+++|||++|+..+.
T Consensus 6 VDDd~~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~ 84 (387)
T 1ny5_A 6 IEDDKVFRGLLEEYLSMKGIK-VESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTI 84 (387)
T ss_dssp ECCCHHHHHHHHHHHHHHTCE-EEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCH
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCH
Confidence 589999999999999988999 99999999999998644321 33566653 333488999999999999
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
+...++++.||++|+.||++
T Consensus 85 ~~~~~a~~~Ga~dyl~KP~~ 104 (387)
T 1ny5_A 85 KTAVEAMKMGAYDFLTKPCM 104 (387)
T ss_dssp HHHHHHHTTTCCEEEEESCC
T ss_pred HHHHHHHhcCceEEecCCCC
Confidence 99999999999999999986
No 47
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.49 E-value=6.2e-14 Score=77.63 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..++.+|++.||. +. .+.++.+|++.++...++ +..|++++ +...+.+|+|++|+..+
T Consensus 7 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 7 IDDHPLAIAAIRNLLIKNDIE-ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp ECCCHHHHHHHHHHHHHTTEE-EEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC--
T ss_pred EcCCHHHHHHHHHHHhhCCcE-EEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 588999999999999999988 76 899999999988644321 23455553 33348899999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....++++.|+++|+.||+.
T Consensus 86 ~~~~~~~~~~g~~~~l~kp~~ 106 (134)
T 3f6c_A 86 HFYGKHCADAGANGFVSKKEG 106 (134)
T ss_dssp -CTHHHHHHTTCSEEEEGGGC
T ss_pred hHHHHHHHHhCCCEEEeCCCC
Confidence 888889999999999999986
No 48
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.48 E-value=6.9e-14 Score=76.89 Aligned_cols=87 Identities=11% Similarity=-0.006 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhh--hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIY--SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~--~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.++...++ +..|++++ +.. .+.+|+|++|+..
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLGFQ-ADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTEE-EEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred EcCCHHHHHHHHHHHHHcCCC-EEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 588999999999999999998 99999999999998654421 23455553 333 3789999999988
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+... .+++..|+++|+.||++.
T Consensus 88 ~~~~-~~~~~~g~~~~l~KP~~~ 109 (127)
T 3i42_A 88 KNDL-GKEACELFDFYLEKPIDI 109 (127)
T ss_dssp CTTC-CHHHHHHCSEEEESSCCH
T ss_pred chhH-HHHHHHhhHHheeCCCCH
Confidence 8877 788999999999999973
No 49
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.48 E-value=2e-13 Score=83.42 Aligned_cols=88 Identities=18% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------CC---CchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------SA---NGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~~---~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
|||++..+..++.+|+..||. +..+.++.+|++.+....++ .+ +|++++..+ .+.+|||++|+..+..
T Consensus 43 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~ 121 (249)
T 3q9s_A 43 IEDDHDIANVLRMDLTDAGYV-VDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVE 121 (249)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHH
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHH
Confidence 589999999999999999998 99999999999998644422 12 334442222 2789999999999999
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...+++++||++|+.||+..
T Consensus 122 ~~~~a~~~Ga~~yl~Kp~~~ 141 (249)
T 3q9s_A 122 EKVRLLGLGADDYLIKPFHP 141 (249)
T ss_dssp HHHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHHCCCcEEEECCCCH
Confidence 99999999999999999873
No 50
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.48 E-value=2.1e-13 Score=75.60 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+...|+..||. +..+.++.+++..+....++ +..|++++ ....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (136)
T 1mvo_A 9 VDDEESIVTLLQYNLERSGYD-VITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEE 87 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCC
T ss_pred EECCHHHHHHHHHHHHHCCcE-EEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence 588999999999999988999 99999999999988543321 23455553 333378999999998888
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~ 107 (136)
T 1mvo_A 88 FDKVLGLELGADDYMTKPFS 107 (136)
T ss_dssp CCHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 88888999999999999986
No 51
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.48 E-value=3.9e-13 Score=73.04 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--hcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--SREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--~~~~pii~lt~~~~~~ 69 (93)
+||++..+..++..|+..||. +..+.++.+++..+....++ +..|++++... .+.+|+|++|+..+..
T Consensus 7 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~ 85 (121)
T 1zh2_A 7 VEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEES 85 (121)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHH
T ss_pred EeCCHHHHHHHHHHHhcCCCE-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHH
Confidence 588999999999999988999 99999999999887533221 22455553222 2789999999999998
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||++
T Consensus 86 ~~~~~~~~g~~~~l~Kp~~ 104 (121)
T 1zh2_A 86 DKIAALDAGADDYLSKPFG 104 (121)
T ss_dssp HHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHhcCCCeEEeCCcC
Confidence 8889999999999999986
No 52
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.48 E-value=7.6e-13 Score=73.34 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhcc-------Cccc---------CCCchHHHh---hhh--cCC
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLGL-------DEEQ---------SANGFDVRT---IYS--REI 57 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~~-------~~~~---------~~~~~d~l~---~~~--~~~ 57 (93)
+||++..+..++.+|+..|+ . +..+.++.+|++.+.. ..++ +..|++++. ... +.+
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~ 86 (140)
T 1k68_A 8 VEDNKADIRLIQEALANSTVPHE-VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRI 86 (140)
T ss_dssp ECCCHHHHHHHHHHHHTCSSCCE-EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGS
T ss_pred EeCCHHHHHHHHHHHHhcCCCce-EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccc
Confidence 58899999999999999888 6 9999999999999875 2221 234555533 322 678
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 58 PVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
|+|++|+..+.....++++.|+++|+.||++
T Consensus 87 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~ 117 (140)
T 1k68_A 87 PVVVLSTSINEDDIFHSYDLHVNCYITKSAN 117 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSS
T ss_pred cEEEEecCCcHHHHHHHHHhchhheecCCCC
Confidence 9999999999999999999999999999986
No 53
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.48 E-value=1.1e-13 Score=77.28 Aligned_cols=87 Identities=10% Similarity=0.035 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---Hhh--hhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTI--YSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~--~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|++.||. +..+.++.+|++.+....++ +..|+++ ++. ..+.+|||++|+..
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFD-SDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred EcCCHHHHHHHHHHHHHCCCe-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 589999999999999999999 99999999999998654431 2345565 333 23789999999988
Q ss_pred CHHHHH-HHHHcCCcceeeccch
Q 042991 67 ILVRID-RYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~-~~~~~ga~d~l~kP~~ 88 (93)
+..... .+++.|+++|+.||+.
T Consensus 91 ~~~~~~~~~~~~g~~~~l~kP~~ 113 (140)
T 3grc_A 91 REGELEFNSQPLAVSTWLEKPID 113 (140)
T ss_dssp HHHHHHHCCTTTCCCEEECSSCC
T ss_pred ChHHHHHHhhhcCCCEEEeCCCC
Confidence 877766 7889999999999986
No 54
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.48 E-value=8.8e-13 Score=73.24 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc--------cCCCchHHHhhhh---c----CC-cEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE--------QSANGFDVRTIYS---R----EI-PVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~--------~~~~~~d~l~~~~---~----~~-pii~lt~ 64 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+..... ++.+|++++..+. + .. |||++|+
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~ 91 (136)
T 1dcf_A 13 MDENGVSRMVTKGLLVHLGCE-VTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSG 91 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEES
T ss_pred EeCCHHHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeC
Confidence 589999999999999988999 9999999999998864321 1234555533221 2 23 5788999
Q ss_pred CCCHHHHHHHHHcCCcceeeccch
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
..+.....++++.|+++|+.||++
T Consensus 92 ~~~~~~~~~~~~~ga~~~l~KP~~ 115 (136)
T 1dcf_A 92 NTDKSTKEKCMSFGLDGVLLKPVS 115 (136)
T ss_dssp CCSHHHHHHHHHTTCCEEEESSCC
T ss_pred CCCHHHHHHHHHcCCCeEEECCCC
Confidence 999888889999999999999986
No 55
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.48 E-value=6.1e-13 Score=75.43 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|+..+....++ +..|++++ ....+.+|||++|+..+.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~ 87 (155)
T 1qkk_A 9 IDDDRDLRKAMQQTLELAGFT-VSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDI 87 (155)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGH
T ss_pred EeCCHHHHHHHHHHHHHcCcE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCh
Confidence 588999999999999999999 99999999999998654321 22455543 333378999999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||+.
T Consensus 88 ~~~~~~~~~g~~~~l~kP~~ 107 (155)
T 1qkk_A 88 PMAVQAIQDGAYDFIAKPFA 107 (155)
T ss_dssp HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHhcCCCeEEeCCCC
Confidence 88899999999999999986
No 56
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.47 E-value=2.2e-13 Score=89.12 Aligned_cols=87 Identities=25% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc---------cCCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE---------QSANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
|||++..+..+..+|+..||. +..+.++.+|++.+....+ ++++|++++..+ .+.+|||++|+..
T Consensus 7 vdD~~~~~~~l~~~L~~~~~~-v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~ 85 (459)
T 1w25_A 7 VDDIEANVRLLEAKLTAEYYE-VSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD 85 (459)
T ss_dssp ECSSTTHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSS
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCC
Confidence 589999999999999988999 9999999999998864332 134566663322 2578999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.||++||.||+.
T Consensus 86 ~~~~~~~a~~~Ga~~~l~KP~~ 107 (459)
T 1w25_A 86 GRGDRIQGLESGASDFLTKPID 107 (459)
T ss_dssp CHHHHHHHHHHTCCEEEESSCC
T ss_pred CHHHHHHHHHcCCCEEEeCCCC
Confidence 9999999999999999999986
No 57
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.47 E-value=8.5e-14 Score=76.36 Aligned_cols=87 Identities=22% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh---h--cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY---S--REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~---~--~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.++++.+....++ +.+|++++..+ . +.+|+|++|+..
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 8 VEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred EcCCHHHHHHHHHHHHHCCce-EEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 589999999999999988999 99999999999888654321 22345543322 2 678999999998
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||++
T Consensus 87 ~~~~~~~~~~~ga~~~l~Kp~~ 108 (127)
T 2jba_A 87 EEEDRVRGLETGADDCITKPFS 108 (127)
T ss_dssp HHHHHHTTCCCSCSEEEEESCC
T ss_pred CHHHHHHHHhcCCCeEEeCCCC
Confidence 8888888999999999999986
No 58
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.46 E-value=9.9e-13 Score=73.64 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhcc----------Cccc---------CCCchHHHhhh---h--
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLGL----------DEEQ---------SANGFDVRTIY---S-- 54 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~~----------~~~~---------~~~~~d~l~~~---~-- 54 (93)
+||++..+..++.+|+..|+ . +..+.++.+|++.+.. ..++ +..|++++..+ .
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 90 (149)
T 1k66_A 12 VEDSDEDFSTFQRLLQREGVVNP-IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVL 90 (149)
T ss_dssp ECCCHHHHHHHHHHHHHTTBCSC-EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTG
T ss_pred EECCHHHHHHHHHHHHHcCCCce-EEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCccc
Confidence 58899999999999999988 6 9999999999999864 2221 23455553322 2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.+|+|++|+..+.....++++.|+++|+.||++.
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~ 125 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEI 125 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCH
Confidence 67899999999999999999999999999999863
No 59
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.2e-12 Score=73.12 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=72.2
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhcc-----Cccc---------CCCchHH---Hhh----hhcCC
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLGL-----DEEQ---------SANGFDV---RTI----YSREI 57 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~~-----~~~~---------~~~~~d~---l~~----~~~~~ 57 (93)
+||++..+..++.+|+..|+ . +..+.++.+|++.+.. ..++ +..|+++ ++. ..+.+
T Consensus 15 vdd~~~~~~~l~~~l~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~ 93 (146)
T 3ilh_A 15 IDDDDIVNFLNTTIIRMTHRVEE-IQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKS 93 (146)
T ss_dssp ECSCHHHHHHHHHHHHTTCCEEE-EEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTC
T ss_pred EeCCHHHHHHHHHHHHhcCCCee-eeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCC
Confidence 58899999999999999998 7 9999999999999865 3321 2345665 333 33789
Q ss_pred cEEEEcCCCCHHHHHHHHHcC-Ccceeeccch
Q 042991 58 PVVIMSPEIILVRIDRYLEDG-AEDSETCQMW 88 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~g-a~d~l~kP~~ 88 (93)
|+|++|+..+.....++++.| +++|+.||+.
T Consensus 94 ~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~ 125 (146)
T 3ilh_A 94 IVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT 125 (146)
T ss_dssp EEEEECSSCCHHHHHHHHHCSSCCEEECSSCC
T ss_pred eEEEEeCCCChHHHHHHHhcCCcceeeeCCCC
Confidence 999999999999999999999 9999999997
No 60
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.46 E-value=3e-13 Score=80.82 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|+..+....++ +.+|++++ ....+.+|||++|+..+.
T Consensus 8 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~ 86 (225)
T 1kgs_A 8 VEDERDLADLITEALKKEMFT-VDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDV 86 (225)
T ss_dssp ECSSHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHH
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 589999999999999998999 99999999999988644321 23456653 333378999999999988
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~~ga~~~l~Kp~~~ 107 (225)
T 1kgs_A 87 EYRVKGLNMGADDYLPKPFDL 107 (225)
T ss_dssp HHHHHTCCCCCSEEEESSCCH
T ss_pred HHHHHHHhCCccEEEeCCCCH
Confidence 888899999999999999863
No 61
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.46 E-value=1.4e-12 Score=78.02 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-----cCCCchHHH---hhhhc-CCcEEEEcCCCCHHHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE-----QSANGFDVR---TIYSR-EIPVVIMSPEIILVRI 71 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-----~~~~~~d~l---~~~~~-~~pii~lt~~~~~~~~ 71 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....+ ++++|++++ ... + .+|||++|+..+....
T Consensus 6 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlvilp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~ 83 (223)
T 2hqr_A 6 IEKNSVLGGEIEKGLNVKGFM-ADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEE 83 (223)
T ss_dssp ECSCHHHHHHHHHHHGGGTCC-EEEESSHHHHHHHHTTSCCSEEEECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHHHH
T ss_pred EcCCHHHHHHHHHHHHHCCcE-EEEECCHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHHHH
Confidence 589999999999999999999 9999999999999875432 234566653 333 5 8999999999999999
Q ss_pred HHHHHcCCcceeeccc-h
Q 042991 72 DRYLEDGAEDSETCQM-W 88 (93)
Q Consensus 72 ~~~~~~ga~d~l~kP~-~ 88 (93)
.++++.|+++|+.||+ +
T Consensus 84 ~~~~~~Ga~~~l~Kp~~~ 101 (223)
T 2hqr_A 84 VHAFEQGADDYIAKPYRS 101 (223)
T ss_dssp HHHHHHTCSEEEETTCSC
T ss_pred HHHHHcCCCEEEECCCCC
Confidence 9999999999999998 5
No 62
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.46 E-value=1.3e-12 Score=74.06 Aligned_cols=87 Identities=15% Similarity=-0.026 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|+..+....++ +..|++++ ....+.+|||++|+..+.
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 91 (154)
T 2rjn_A 13 VDDEQPILNSLKRLIKRLGCN-IITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADA 91 (154)
T ss_dssp ECSCHHHHHHHHHHHHTTTCE-EEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGH
T ss_pred EcCCHHHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCH
Confidence 588999999999999999999 99999999999998754421 23455553 333378999999999998
Q ss_pred HHHHHHHHcC-Ccceeeccch
Q 042991 69 VRIDRYLEDG-AEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~g-a~d~l~kP~~ 88 (93)
....++++.| +++|+.||+.
T Consensus 92 ~~~~~~~~~g~~~~~l~kP~~ 112 (154)
T 2rjn_A 92 QATIDAVNRGKISRFLLKPWE 112 (154)
T ss_dssp HHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHhccchheeeeCCCC
Confidence 8888999998 9999999986
No 63
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.45 E-value=5.5e-13 Score=73.57 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=69.2
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhh-hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIY-SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~-~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+.. ||. +. .+.++.+|++.+....++ +.+|++++ ... .+.+|+|++|+.
T Consensus 8 vdd~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~ 86 (130)
T 1dz3_A 8 ADDNRELVSLLDEYISSQPDME-VIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAF 86 (130)
T ss_dssp ECSCHHHHHHHHHHHHTSTTEE-EEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEET
T ss_pred EcCCHHHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecC
Confidence 589999999999999876 777 54 899999999988643321 23566653 332 267889999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||++
T Consensus 87 ~~~~~~~~~~~~ga~~~l~KP~~ 109 (130)
T 1dz3_A 87 GQEDVTKKAVELGASYFILKPFD 109 (130)
T ss_dssp TCHHHHHHHHHTTCEEEEECSSC
T ss_pred CCHHHHHHHHHcCCCEEEeCCCC
Confidence 99989899999999999999986
No 64
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.45 E-value=1.5e-12 Score=72.39 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc-----CCCchHH---Hhhhhc-CCcEEEEcCCCCHHHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ-----SANGFDV---RTIYSR-EIPVVIMSPEIILVRI 71 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~-----~~~~~d~---l~~~~~-~~pii~lt~~~~~~~~ 71 (93)
+||++..+..++.+|+..||. +..+.++.+++..+....++ +..|+++ +... + .+|||++|+..+....
T Consensus 24 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlvi~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~ 101 (137)
T 2pln_A 24 IEKNSVLGGEIEKGLNVKGFM-ADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEE 101 (137)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHH-STTSEEEEEESSCCHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCcE-EEEeCCHHHHHHHHHcCCCCEEEEcCccHHHHHHHHHhc-CCCccEEEEeCCCCHHHH
Confidence 589999999999999999999 99999999999988644321 2345565 3333 6 8999999999999999
Q ss_pred HHHHHcCCcceeeccc-h
Q 042991 72 DRYLEDGAEDSETCQM-W 88 (93)
Q Consensus 72 ~~~~~~ga~d~l~kP~-~ 88 (93)
.++++.|+++|+.||+ .
T Consensus 102 ~~~~~~g~~~~l~kP~~~ 119 (137)
T 2pln_A 102 VHAFEQGADDYIAKPYRS 119 (137)
T ss_dssp HHHHHTTCSEEEESSCSC
T ss_pred HHHHHcCCceeeeCCCCC
Confidence 9999999999999998 5
No 65
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.45 E-value=1.1e-12 Score=73.18 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc----C-C---CchHHH---hhhhcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ----S-A---NGFDVR---TIYSREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~----~-~---~~~d~l---~~~~~~~pii~lt~~~~~~ 69 (93)
+||++..+..++.+|+..||+ +..+.++.+|++.+....++ + + .|++++ ....+.+|+|++|+..+..
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~ 88 (142)
T 2qxy_A 10 VDESRITFLAVKNALEKDGFN-VIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYVDKD 88 (142)
T ss_dssp ECSCHHHHHHHHHHHGGGTCE-EEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCCCHH
T ss_pred EeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECCCCHH
Confidence 588999999999999999999 99999999999998754421 1 1 123332 2223789999999999998
Q ss_pred HHHHHHHcCCcceeeccch
Q 042991 70 RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||+.
T Consensus 89 ~~~~~~~~g~~~~l~kP~~ 107 (142)
T 2qxy_A 89 LIINSVKAGAVDYILKPFR 107 (142)
T ss_dssp HHHHHHHHTCSCEEESSCC
T ss_pred HHHHHHHCCcceeEeCCCC
Confidence 8999999999999999986
No 66
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.45 E-value=1e-12 Score=73.25 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +.+|++++..+ .+.+|||++|+..
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 9 VDDSPMIVDVFVTMLERGGYR-PITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSC
T ss_pred EeCCHHHHHHHHHHHHHcCce-EEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCC
Confidence 589999999999999999999 99999999999988644321 23466653322 1578999999987
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.......+...|+++|+.||+..
T Consensus 88 ~~~~~~~~~~~~~~~~l~KP~~~ 110 (138)
T 3c3m_A 88 LTPEEANEYGSYIEDYILKPTTH 110 (138)
T ss_dssp CCHHHHHHTTTTCSEEEECCCHH
T ss_pred ChHHHHHHhhcCHhheEeCCCCH
Confidence 66555555667789999999873
No 67
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.44 E-value=8.1e-13 Score=73.48 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc--------------CCCchHHH---hhhhcCCcEEEEc
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ--------------SANGFDVR---TIYSREIPVVIMS 63 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~--------------~~~~~d~l---~~~~~~~pii~lt 63 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +..|++++ ....+.+|||++|
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 9 VDDNKGVLTAVQLLLKNHFSK-VITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp ECSCHHHHHHHHHHHTTTSSE-EEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEE
Confidence 588999999999999999999 99999999999998644321 22344443 3333789999999
Q ss_pred CCCCHHHHHHHHHcCCcceeeccch
Q 042991 64 PEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 64 ~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+..+.....++++.|+++|+.||+.
T Consensus 88 ~~~~~~~~~~~~~~g~~~~l~kp~~ 112 (140)
T 2qr3_A 88 AYADIDLAVRGIKEGASDFVVKPWD 112 (140)
T ss_dssp EGGGHHHHHHHHHTTCCEEEEESCC
T ss_pred CCCCHHHHHHHHHcCchheeeCCCC
Confidence 9999888899999999999999986
No 68
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.44 E-value=2.5e-12 Score=71.64 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---Hhh--hhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTI--YSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~--~~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+. .||..+..+.++.+|++.++...++ +..|+++ +.. ..+.+|+|++|+.
T Consensus 14 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 14 IEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred EECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCC
Confidence 58899999999999998 8887578899999999998644321 2345555 333 2378999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||+.
T Consensus 94 ~~~~~~~~~~~~g~~~~l~kP~~ 116 (143)
T 3cnb_A 94 LTDDNVSRIVALGAETCFGKPLN 116 (143)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCC
T ss_pred CCHHHHHHHHhcCCcEEEeCCCC
Confidence 99998899999999999999986
No 69
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.44 E-value=2e-13 Score=76.37 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhcc-Cccc----------CCCchHH---HhhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGL-DEEQ----------SANGFDV---RTIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-~~~~----------~~~~~d~---l~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+.. ..++ +..|+++ +... +.+|+|++|+..
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~~~ 88 (140)
T 3h5i_A 11 VEDSKFQAKTIANILNKYGYT-VEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTAHT 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEESSS
T ss_pred EeCCHHHHHHHHHHHHHcCCE-EEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEECCC
Confidence 589999999999999999999 9999999999999864 2221 1345555 3333 899999999998
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 89 ~~~~~~~~~~~g~~~~l~KP~~ 110 (140)
T 3h5i_A 89 EPAVVEKIRSVTAYGYVMKSAT 110 (140)
T ss_dssp SCCCCGGGGGSCEEEEEETTCC
T ss_pred CHHHHHHHHhCCCcEEEeCCCC
Confidence 8877778899999999999986
No 70
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.44 E-value=1.9e-12 Score=71.42 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh-----cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS-----REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~-----~~~pii~lt~~~ 66 (93)
+||++..+..++.+|++.||. +..+.++.+|++.++...++ +..|++++..+. ..++|+++++..
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~ 90 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQ-VEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLD 90 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSC
T ss_pred EECCHHHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCC
Confidence 588999999999999999999 99999999999998644421 234555533322 345566555555
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.. ...++++.|+++|+.||+..
T Consensus 91 ~~-~~~~~~~~g~~~~l~kP~~~ 112 (132)
T 3lte_A 91 KA-KLQQAVTEGADDYLEKPFDN 112 (132)
T ss_dssp SH-HHHHHHHHTCCEEECSSCCH
T ss_pred hH-HHHHHHHhChHHHhhCCCCH
Confidence 44 77789999999999999873
No 71
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.43 E-value=9.1e-13 Score=78.38 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCce-EEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDL-YCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v-~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+..+ |. + ..+.++.+|++.+....++ +++|++++. ...+.+|||++|+..
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~-vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 11 IDDHPMLRTGVKQLISMAPDIT-VVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp ECSCHHHHHHHHHHHTTCTTEE-EEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred ECCCHHHHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5899999999999999764 77 5 7899999999988643321 234566533 333789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.|+++|+.||++.
T Consensus 90 ~~~~~~~~~~~Ga~~~l~Kp~~~ 112 (215)
T 1a04_A 90 HEEDVVTALKRGADGYLLKDMEP 112 (215)
T ss_dssp CHHHHHHHHHTTCSEEEETTCCH
T ss_pred CHHHHHHHHHcCCcEEEeCCCCH
Confidence 99999999999999999999863
No 72
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.43 E-value=1.7e-12 Score=72.52 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CceEEeCCHHHHHHHhcc------Cccc---------CCCchHHHhh---hh--cCCc
Q 042991 1 LNDSFVDRKVIERLLTISSS--RDLYCSCSGRRALQFLGL------DEEQ---------SANGFDVRTI---YS--REIP 58 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~--~~v~~~~~~~~a~~~~~~------~~~~---------~~~~~d~l~~---~~--~~~p 58 (93)
+||++..+..++.+|+..|+ . +..+.++.+|++.++. ..++ +..|++++.. .. +.+|
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ 91 (143)
T 2qvg_A 13 LEDDEVDIQSVERVFHKISSLIK-IEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIE 91 (143)
T ss_dssp ECCCHHHHHHHHHHHHHHCTTCC-EEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCE
T ss_pred EeCCHHHHHHHHHHHHHhCCCce-EEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCc
Confidence 58899999999999998888 7 9999999999999864 2221 2245555332 22 6889
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 59 VVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 59 ii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+|++|+..+.....++++.|+++|+.||++.
T Consensus 92 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~ 122 (143)
T 2qvg_A 92 VFVLTAAYTSKDKLAFESLNIRGHLIKPLDY 122 (143)
T ss_dssp EEEEESCCCHHHHHHHTTTTCCEEEESSCCH
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEECCCCH
Confidence 9999999999898999999999999999963
No 73
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.43 E-value=3.8e-13 Score=72.73 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++..|+..||. +..+.++.++++.+....++ +.+|++++ +...+.+|+|++|+..+.
T Consensus 7 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 7 VDDEPNIRELLKEELQEEGYE-IDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcch
Confidence 589999999999999999999 99999999999988644321 23455553 333378999999987665
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
. .++.+.|+++|+.||+..
T Consensus 86 ~--~~~~~~g~~~~l~Kp~~~ 104 (116)
T 3a10_A 86 R--SDMSSWAADEYVVKSFNF 104 (116)
T ss_dssp G--GCGGGGGSSEEEECCSST
T ss_pred H--HHHHhccccceEECCCCH
Confidence 4 567889999999999863
No 74
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.43 E-value=1.4e-12 Score=73.72 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCC-ceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSR-DLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..++.+|+..|+. .+..+.++.+|++.++...++ +..|++++ ....+.+|||++|+..+
T Consensus 21 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 21 GDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDE 100 (152)
T ss_dssp ECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred EcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 589999999999999988843 356899999999998644321 23455553 33348899999999999
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.....++++.|+++|+.||+.
T Consensus 101 ~~~~~~~~~~g~~~~l~Kp~~ 121 (152)
T 3eul_A 101 PAIVYQALQQGAAGFLLKDST 121 (152)
T ss_dssp HHHHHHHHHTTCSEEEETTCC
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 999999999999999999986
No 75
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.43 E-value=5e-13 Score=75.04 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---Hhh--hhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTI--YSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~--~~~~~pii~lt~~~ 66 (93)
+||++..+..+...|+..||+ +..+.++.+++..+....++ +..|+++ +.. ..+.+|||++|+..
T Consensus 14 vd~~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 14 VDTQLPALAASISALSQEGFD-IIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp ECTTGGGGHHHHHHHHHHTEE-EEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred EeCCHHHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 478888899999999999999 99999999999988643321 2345555 333 23789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 93 ~~~~~~~~~~~g~~~~l~kp~~ 114 (147)
T 2zay_A 93 TAKEEAQLLDMGFIDFIAKPVN 114 (147)
T ss_dssp CHHHHHHHHHHTCSEEEESSCC
T ss_pred CHHHHHHHHhCCCCEEEeCCCC
Confidence 9999999999999999999986
No 76
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.43 E-value=4.2e-13 Score=79.40 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~ 68 (93)
|||++..+..+..+|+..||. +. .+.++.+|++.+....++ +++|++++..+. ...|||++|+..+.
T Consensus 19 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~ 97 (205)
T 1s8n_A 19 AEDEALIRMDLAEMLREEGYE-IVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQR 97 (205)
T ss_dssp ECSSHHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGH
T ss_pred EECCHHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCH
Confidence 589999999999999998999 77 899999999988643321 235566533221 34599999999998
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 98 ~~~~~~~~~ga~~~l~KP~~ 117 (205)
T 1s8n_A 98 DLVERARDAGAMAYLVKPFS 117 (205)
T ss_dssp HHHHTTGGGSCEEEEEESCC
T ss_pred HHHHHHHhcCCcEEEeCCCC
Confidence 88889999999999999986
No 77
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.42 E-value=2.5e-12 Score=72.73 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=70.8
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+. .||. +. .+.++.+|++.+....++ +..|++++ ....+.+|||++|+..
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~-v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 11 VDDHPIVREGYRRLIERRPGYA-VVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp ECSCHHHHHHHHHHHTTSTTEE-EEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred ECCcHHHHHHHHHHHhhCCCcE-EEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 58899999999999997 7888 76 899999999998654321 22455553 3333789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 90 ~~~~~~~~~~~g~~~~l~kp~~ 111 (153)
T 3cz5_A 90 GSAFALKAFEAGASGYVTKSSD 111 (153)
T ss_dssp SHHHHHHHHHTTCSEEEETTSC
T ss_pred CHHHHHHHHHCCCcEEEecCCC
Confidence 9999999999999999999986
No 78
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.42 E-value=8.8e-13 Score=72.84 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hh--hcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IY--SREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~--~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+ .+|. +..+.++.+|++.+....++ +..|++++. .. .+.+|||++|+..
T Consensus 10 vdd~~~~~~~l~~~l~-~~~~-v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 10 VENSWTMRETLRLLLS-GEFD-CTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp ECSCHHHHHHHHHHHT-TTSE-EEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred EcCCHHHHHHHHHHHh-CCcE-EEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCC
Confidence 5889999999999998 7899 99999999999998644431 234555533 22 2589999999988
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+... .++++.|+++|+.||+..
T Consensus 88 ~~~~-~~~~~~g~~~~l~KP~~~ 109 (133)
T 3nhm_A 88 PRTE-GPADQPVPDAYLVKPVKP 109 (133)
T ss_dssp C------TTSCCCSEEEESSCCH
T ss_pred cHhH-HHHhhcCCceEEeccCCH
Confidence 7777 788999999999999873
No 79
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.41 E-value=3.8e-13 Score=75.55 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=69.5
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhcc--Cccc------CC---CchHHH---hhhhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGL--DEEQ------SA---NGFDVR---TIYSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~--~~~~------~~---~~~d~l---~~~~~~~pii~lt~~ 65 (93)
+||++..+..++.+|+..| |. +..+.++.+++..+.. ..++ .+ .|++++ +...+.+|||++|+.
T Consensus 26 vdd~~~~~~~l~~~L~~~g~~~-v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 26 ASEDASRLAHLARLVGDAGRYR-VTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECSCHHHHHHHHHHHHHHCSCE-EEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCCHHHHHHHHHHHhhCCCeE-EEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 5899999999999999988 99 9999999988877643 2221 11 234442 333378999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||+.
T Consensus 105 ~~~~~~~~~~~~ga~~~l~Kp~~ 127 (146)
T 4dad_A 105 ASSQTLLDAMRAGVRDVLRWPLE 127 (146)
T ss_dssp CCHHHHHHHHTTTEEEEEESSCC
T ss_pred CCHHHHHHHHHhCCceeEcCCCC
Confidence 99999999999999999999986
No 80
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.41 E-value=2.2e-12 Score=72.91 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc----------CCCchHH---HhhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ----------SANGFDV---RTIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~----------~~~~~d~---l~~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+..+|+. +|. +..+.++.+|++.+....+. +..|+++ +....+.+|||++|+..+
T Consensus 10 vdd~~~~~~~l~~~L~~-~~~-v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 87 (151)
T 3kcn_A 10 VDDDYSLLNTLKRNLSF-DFE-VTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQD 87 (151)
T ss_dssp ECSCHHHHHHHHHHHTT-TSE-EEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGG
T ss_pred EeCCHHHHHHHHHHhcc-Cce-EEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 58899999999999975 889 99999999999998654321 2345555 333348899999999999
Q ss_pred HHHHHHHHHcC-Ccceeeccch
Q 042991 68 LVRIDRYLEDG-AEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~g-a~d~l~kP~~ 88 (93)
.....++++.| +++|+.||+.
T Consensus 88 ~~~~~~~~~~g~~~~~l~KP~~ 109 (151)
T 3kcn_A 88 LTTAMEAVNEGQVFRFLNKPCQ 109 (151)
T ss_dssp HHHHHHHHHHTCCSEEEESSCC
T ss_pred HHHHHHHHHcCCeeEEEcCCCC
Confidence 99999999999 9999999986
No 81
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.41 E-value=1.1e-12 Score=78.67 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....++ +.+|+++ +... +.+|||++|+..+.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt~~~~~ 87 (230)
T 2oqr_A 10 VEDEESLADPLAFLLRKEGFE-ATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSE 87 (230)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEECCHHH
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEeCCCcH
Confidence 589999999999999988999 99999999999988543321 2345555 3332 78999999999888
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~ga~~~l~Kp~~ 107 (230)
T 2oqr_A 88 IDKVVGLELGADDYVTKPYS 107 (230)
T ss_dssp HHHHHHHHHCCSCCCCSSCC
T ss_pred HHHHHHHHcCCCEEEeCCCC
Confidence 88889999999999999986
No 82
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.41 E-value=2.3e-12 Score=71.61 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceE-EeCCHHHHHHHhccCccc----------CCCchHH---HhhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLY-CSCSGRRALQFLGLDEEQ----------SANGFDV---RTIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~~----------~~~~~d~---l~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++..|+..||+ +. .+.++.+|++.+....++ +..|+++ +... +.+|||++|+..
T Consensus 15 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~ 92 (140)
T 3cg0_A 15 VEDGRLAAATLRIQLESLGYD-VLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITSSQ 92 (140)
T ss_dssp ECCBHHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEECCC
T ss_pred EECCHHHHHHHHHHHHHCCCe-eEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEecCC
Confidence 578999999999999999999 88 599999999988643321 2345555 3333 789999999999
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 93 ~~~~~~~~~~~g~~~~l~kp~~ 114 (140)
T 3cg0_A 93 DVETFQRAKRVNPFGYLAKPVA 114 (140)
T ss_dssp CHHHHHHHHTTCCSEEEEESCC
T ss_pred CHHHHHHHHhcCCCEEEeCCCC
Confidence 9998889999999999999986
No 83
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.40 E-value=9.9e-13 Score=73.70 Aligned_cols=88 Identities=13% Similarity=-0.003 Sum_probs=64.1
Q ss_pred CCCcHHHHHHHHHHHhh--cCCCceE-EeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTI--SSSRDLY-CSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~--~~~~~v~-~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~ 65 (93)
+||++..+..+...|.. .+|. +. .+.++.++++.+....++ +++|++++ ....+.+|||++|+.
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 8 VDDEKLTRDGLIANINWKALSFD-QIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp ECSCHHHHHHHHHHCCGGGSCCS-EEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCS
T ss_pred EeCCHHHHHHHHHHHHHccCCcE-EeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 58999999999999973 5787 66 999999999988654321 23556653 333378999999998
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~~~~~ga~~~l~KP~~~ 110 (141)
T 3cu5_A 87 SDKEYLKAAIKFRAIRYVEKPIDP 110 (141)
T ss_dssp TTTCCC------CCCEEECSSCCH
T ss_pred CcHHHHHHHHhCCccEEEeCCCCH
Confidence 888788889999999999999863
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.40 E-value=3.7e-13 Score=80.81 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..+..+|+..||. +..+.++.+|++.+....++ +.+|++++ ....+.+|||++|+..+.
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 91 (233)
T 1ys7_A 13 VDDDSDVLASLERGLRLSGFE-VATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSV 91 (233)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTT
T ss_pred EeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 589999999999999998999 99999999999988644321 23456653 333378999999999888
Q ss_pred HHHHHHHHcCCcceeeccch
Q 042991 69 VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~ 88 (93)
....++++.|+++|+.||++
T Consensus 92 ~~~~~~~~~ga~~~l~Kp~~ 111 (233)
T 1ys7_A 92 DDRVAGLEAGADDYLVKPFV 111 (233)
T ss_dssp TCCCTTTTTTCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEEeCCCC
Confidence 88888999999999999986
No 85
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.39 E-value=4.3e-12 Score=70.74 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=67.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+.. |. +..+.++.++++.+....++ +++|++++ ....+.+|+|++|+..+.
T Consensus 7 vdd~~~~~~~l~~~l~~~-~~-v~~~~~~~~a~~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 84 (139)
T 2jk1_A 7 VDDEPHSLAAMKLALEDD-FD-VLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDS 84 (139)
T ss_dssp ECSSHHHHHHHHHHHTTT-SC-EEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTC
T ss_pred EcCCHHHHHHHHHHhhcC-ce-EEEcCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCCh
Confidence 589999999999999865 88 99999999999988644321 33566653 333378899999998887
Q ss_pred HHHHHHHHc-CCcceeeccch
Q 042991 69 VRIDRYLED-GAEDSETCQMW 88 (93)
Q Consensus 69 ~~~~~~~~~-ga~d~l~kP~~ 88 (93)
....++++. |+++|+.||+.
T Consensus 85 ~~~~~~~~~~ga~~~l~KP~~ 105 (139)
T 2jk1_A 85 ASMMAAINDAGIHQFLTKPWH 105 (139)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHhhchhhhccCCCC
Confidence 787888876 59999999986
No 86
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.38 E-value=1e-12 Score=79.48 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~~ 69 (93)
+||++..+..++.+|+..||. +..+.++.+|++.+....++ +.+|++++..+. ..+|||++|+..+..
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~ 89 (238)
T 2gwr_A 11 VDDDASLAEMLTIVLRGEGFD-TAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTV 89 (238)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCS
T ss_pred EeCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHH
Confidence 589999999999999988999 99999999999988543321 234555533222 589999999998888
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||++.
T Consensus 90 ~~~~~~~~Ga~~~l~Kp~~~ 109 (238)
T 2gwr_A 90 DVVLGLESGADDYIMKPFKP 109 (238)
T ss_dssp CHHHHHHTTCCEEEEESCCH
T ss_pred HHHHHHHCCCCEEEeCCCCH
Confidence 88899999999999999863
No 87
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.37 E-value=3.4e-13 Score=75.29 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---Hhh--hhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTI--YSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~--~~~~~pii~lt~~~ 66 (93)
+||++..+..+..+|+..||+ +..+.++.+|++.++...++ +..|+++ +.. ..+.+|||++|+..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 13 VDDDAHVRIAVKTILSDAGFH-IISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred EcCCHHHHHHHHHHHHHCCeE-EEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCC
Confidence 588999999999999999999 99999999999998654321 2345555 333 23788999999988
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 92 ~~~~~~~~~~~g~~~~l~kp~~ 113 (142)
T 3cg4_A 92 APDAKMIGLQEYVVDYITKPFD 113 (142)
T ss_dssp CCCCSSTTGGGGEEEEEESSCC
T ss_pred CHHHHHHHHhcCccEEEeCCCC
Confidence 8777778899999999999986
No 88
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.37 E-value=6e-13 Score=74.25 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhh--cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYS--REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~--~~~pii~lt~~~ 66 (93)
+||++..+..+..+|+.. |. +..+.++.+|++.+....++ +..|++++ +... +.+|+|++|+..
T Consensus 9 vdd~~~~~~~l~~~l~~~-~~-v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 9 IDQQDFSRIELKNFLDSE-YL-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp ECSCHHHHHHHHHHHTTT-SE-EEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred EeCCHHHHHHHHHHHHhc-ce-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCC
Confidence 588999999999999877 88 99999999999998644321 12344442 3322 789999999998
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 87 ~~~~~~~~~~~g~~~~l~KP~~ 108 (140)
T 3n53_A 87 HKEAIVNGLHSGADDYLTKPFN 108 (140)
T ss_dssp ---CTTTTTTCCCSEEEESSCC
T ss_pred CHHHHHHHHhcCCCeeeeCCCC
Confidence 8888888999999999999986
No 89
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.36 E-value=4e-12 Score=71.88 Aligned_cols=88 Identities=22% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhcc-Cccc---------CCCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGL-DEEQ---------SANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~-~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++.+|+.. |+..+..+.++.+|+..++. ..++ +..|++++ ....+.+|||++|+..
T Consensus 9 vdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 9 VDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGET 88 (154)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC----
T ss_pred EcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCC
Confidence 588999999999999987 77328899999999999875 3321 12344443 3333789999999998
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.....++++.|+++|+.||+.
T Consensus 89 ~~~~~~~~~~~g~~~~l~kp~~ 110 (154)
T 2qsj_A 89 DHELIRAALEAGADGFIPKSAD 110 (154)
T ss_dssp -CHHHHHHHHTTCCBBCCTTSC
T ss_pred CHHHHHHHHHccCCEEEeCCCC
Confidence 8888889999999999999986
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.35 E-value=2.2e-12 Score=72.38 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccC-ccc---------CCCchHHHhhhh--cCCcEEEEcC--C
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLD-EEQ---------SANGFDVRTIYS--REIPVVIMSP--E 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~-~~~---------~~~~~d~l~~~~--~~~pii~lt~--~ 65 (93)
+||++..+..++.+|++. ||..+..+.++.+|++.+... .++ +..|++++..+. ...|++++++ .
T Consensus 19 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~ 98 (145)
T 3kyj_B 19 VDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAV 98 (145)
T ss_dssp ECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCS
T ss_pred EcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEecc
Confidence 589999999999999987 777345899999999988654 321 234555533222 4588999987 5
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||+.
T Consensus 99 ~~~~~~~~~~~~ga~~~l~KP~~ 121 (145)
T 3kyj_B 99 SGSPHAARARELGADGVVAKPSG 121 (145)
T ss_dssp TTSSHHHHHHHTTCSCCCBCCCS
T ss_pred CChHHHHHHHhCCCCEEEeCCCC
Confidence 55666778999999999999986
No 91
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.35 E-value=1.4e-12 Score=82.78 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHHh-hcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh-----hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLT-ISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY-----SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~-~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~-----~~~~pii~lt~~ 65 (93)
|||++..+..++.+|. ..||. +..+.++.+|++.+....++ +++|++++..+ .+.+|||++|+.
T Consensus 24 vdD~~~~~~~l~~~l~~~~~~~-v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~ 102 (358)
T 3bre_A 24 VDDQAMIGEAVRRSLASEAGID-FHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTK 102 (358)
T ss_dssp ECSCTTHHHHHHTTSSSCTTEE-EEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESS
T ss_pred EECCHHHHHHHHHHHHhccCcE-EEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCC
Confidence 5889999999999996 45888 89999999999998643321 34566653332 257999999999
Q ss_pred CCHHHHHHHHHcCCcceeeccch
Q 042991 66 IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
.+.....++++.|+++|+.||+.
T Consensus 103 ~~~~~~~~a~~~Ga~~~l~Kp~~ 125 (358)
T 3bre_A 103 EEPTVKSAAFAAGANDYLVKLPD 125 (358)
T ss_dssp CCHHHHHHHHHTTCSEEEESCCC
T ss_pred CCHHHHHHHHhcChheEeeccCC
Confidence 99999999999999999999986
No 92
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.35 E-value=1e-12 Score=78.95 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~~~~pii~lt~~~~ 67 (93)
|||++..+..++.+|+..+ |..+..+.++.+|++.+....++ +++|++++ ....+.+|||++|+..+
T Consensus 7 vdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 86 (225)
T 3c3w_A 7 VDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTS 86 (225)
T ss_dssp ECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSS
T ss_pred EcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 5899999999999999876 76244799999999988643321 22455553 33338899999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....++++.|+++|+.||++.
T Consensus 87 ~~~~~~~~~~Ga~~~l~Kp~~~ 108 (225)
T 3c3w_A 87 DEAMLDAILAGASGYVVKDIKG 108 (225)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCH
Confidence 9999999999999999999863
No 93
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.35 E-value=3.8e-12 Score=69.40 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc----------CCCchHH---Hhhh--hcCCcEEEEcCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ----------SANGFDV---RTIY--SREIPVVIMSPE 65 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~----------~~~~~d~---l~~~--~~~~pii~lt~~ 65 (93)
+||++..+..++..|+..||+ +..+.++.++++.++...++ +..|+++ ++.. .+.+|+|++ +.
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~ 88 (127)
T 2gkg_A 11 VESDTALSATLRSALEGRGFT-VDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GN 88 (127)
T ss_dssp ECSCHHHHHHHHHHHHHHTCE-EEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-EC
T ss_pred EeCCHHHHHHHHHHHHhcCce-EEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ec
Confidence 578999999999999999999 99999999999988643321 2234444 2332 378999999 88
Q ss_pred CCHHHHHHHHHcCCcceeeccchh
Q 042991 66 IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 66 ~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+.....++++.|+++|+.||++.
T Consensus 89 ~~~~~~~~~~~~g~~~~l~kp~~~ 112 (127)
T 2gkg_A 89 PDGFAQHRKLKAHADEYVAKPVDA 112 (127)
T ss_dssp GGGHHHHHHSTTCCSEEEESSCCH
T ss_pred CCchhHHHHHHhCcchheeCCCCH
Confidence 888888889999999999999863
No 94
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.34 E-value=1.7e-12 Score=79.79 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=63.3
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCcc---------cCCCchHHHhhhh-cCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEE---------QSANGFDVRTIYS-REIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~l~~~~-~~~pii~lt~~~~~~ 69 (93)
|||++..+..+...|... ++. +..+ ++.+++..+....+ ++++|++++.... ..+|||++|+..+.+
T Consensus 10 VdD~~~~~~~l~~~L~~~~~~~-v~~~-~~~~~~~~~~~~~~dlvllD~~mP~~~G~~~~~~lr~~~~pvi~lt~~~~~~ 87 (259)
T 3luf_A 10 VEDSMTIRRMLIQAIAQQTGLE-IDAF-DTLEGARHCQGDEYVVALVDLTLPDAPSGEAVKVLLERGLPVVILTADISED 87 (259)
T ss_dssp ECCCHHHHHHHHHHHHHHHCCE-EEEE-SSTGGGTTCCTTTEEEEEEESCBTTBTTSHHHHHHHHTTCCEEEEECC-CHH
T ss_pred EECCHHHHHHHHHHHHhcCCeE-EEEe-ChHHHHHHhhcCCCcEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEEccCCHH
Confidence 589999999999999764 666 6544 55555555443322 1345666543322 579999999999999
Q ss_pred HHHHHHHcCCcceeeccchhh
Q 042991 70 RIDRYLEDGAEDSETCQMWAR 90 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~~ 90 (93)
...++++.||++|+.||....
T Consensus 88 ~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 88 KREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp HHHHHHHTTCCEEEECSSHHH
T ss_pred HHHHHHHCCCcEEEeCCchhH
Confidence 999999999999999997643
No 95
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.32 E-value=3.7e-12 Score=70.28 Aligned_cols=87 Identities=8% Similarity=-0.005 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..++. +..+.++.+++..+... ++ +..|+++ +....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (135)
T 3eqz_A 9 VDDDTLTCNLLKTIVEPIFGN-VEAFQHPRAFLTLSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSG 86 (135)
T ss_dssp ECSCHHHHHHHHHHHTTTCSC-EEEESCHHHHTTSCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHH
T ss_pred EeCCHHHHHHHHHHHHhhcce-eeeecCHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccch
Confidence 589999999999999988778 99999999999887654 21 1234444 3333388999999998775
Q ss_pred -----HHHHHHHHcCCcceeeccchh
Q 042991 69 -----VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 -----~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||+..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~KP~~~ 112 (135)
T 3eqz_A 87 VLHSAETLALSCGLNVINTFTKPINT 112 (135)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSCCH
T ss_pred hHHHHHHHHHHcCCCcceeeCCCCCH
Confidence 566678899999999999973
No 96
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.32 E-value=1.3e-11 Score=73.52 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-------cCCCchHHH---hhhhcCCcEEEEcCCCCHHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE-------QSANGFDVR---TIYSREIPVVIMSPEIILVR 70 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-------~~~~~~d~l---~~~~~~~pii~lt~~~~~~~ 70 (93)
+||++..+..+..+|+..| . +..+.++.+|++.+...+. ++.+|++++ ....+.+|||++|+..+...
T Consensus 8 vdd~~~~~~~l~~~L~~~~-~-v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~ 85 (220)
T 1p2f_A 8 VDDDKNILKKVSEKLQQLG-R-VKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDES 85 (220)
T ss_dssp ECSCHHHHHHHHHHHTTTE-E-EEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHH
T ss_pred EeCCHHHHHHHHHHHHhCC-C-EEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHH
Confidence 5899999999999999888 7 9999999999988721111 123456653 33337899999999999999
Q ss_pred HHHHHHcCCcceeeccchh
Q 042991 71 IDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 71 ~~~~~~~ga~d~l~kP~~~ 89 (93)
..++++.|+++|+.||++.
T Consensus 86 ~~~~~~~ga~~~l~Kp~~~ 104 (220)
T 1p2f_A 86 VLKGFEAGADDYVTKPFNP 104 (220)
T ss_dssp HHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHcCCCEEEECCCCH
Confidence 9999999999999999863
No 97
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.27 E-value=1.1e-11 Score=66.54 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHH---hhhh--cCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVR---TIYS--REIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l---~~~~--~~~pii~lt~~~ 66 (93)
+++++..+..+...|+..||+ +..+.++.+++..++...++ +..+++++ .... +.+|+|++|+..
T Consensus 7 v~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTAAGFK-VIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp ECCCHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred EeCCHHHHHHHHHHHHhCCcE-EEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCC
Confidence 478899999999999999999 99999999999988643321 22344543 2222 688999999877
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.. .+++.|+++|+.||++
T Consensus 86 ~~~---~~~~~g~~~~l~kp~~ 104 (119)
T 2j48_A 86 PVD---PLLTAQASAILSKPLD 104 (119)
T ss_dssp CSS---HHHHHHCSEECSSCST
T ss_pred Cch---hhhhcCHHHhccCCCC
Confidence 665 7889999999999986
No 98
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.26 E-value=8.4e-13 Score=71.89 Aligned_cols=88 Identities=20% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------CCCc---hHH---HhhhhcCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------SANG---FDV---RTIYSREIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~~~~---~d~---l~~~~~~~pii~lt~~~~~ 68 (93)
+||++..+..++..|+..||. +..+.++.++++.+....++ .+++ +++ +....+.+|+|++|+..+.
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1dc7_A 9 VDDDSSIRWVLERALAGAGLT-CTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDL 87 (124)
T ss_dssp ECSSSSHHHHHHHHHTTTTCC-CEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTS
T ss_pred EeCCHHHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCH
Confidence 478888899999999988999 99999999999998654321 1122 222 2232378999999998888
Q ss_pred HHHHHHHHcCCcceeeccchh
Q 042991 69 VRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~kP~~~ 89 (93)
....++++.|+++|+.||++.
T Consensus 88 ~~~~~~~~~g~~~~l~kp~~~ 108 (124)
T 1dc7_A 88 DAAVSAYQQGAFDYLPKPFDI 108 (124)
T ss_dssp TTTTSSCTTCCCCCBCSSCCH
T ss_pred HHHHHHHhcCcceEeeCCCCH
Confidence 777788999999999999863
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.26 E-value=3.5e-11 Score=68.99 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHhhcC-CCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTISS-SRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~-~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~ 68 (93)
+||++..+..++.+|+..+ +..+..+.++.+|++.+....++ +..|++++..+. ...|+|++|+..+.
T Consensus 31 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~ 110 (164)
T 3t8y_A 31 VDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEE 110 (164)
T ss_dssp ECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCT
T ss_pred EcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCcc
Confidence 5899999999999999765 33355899999999988543321 234555533221 34899999987664
Q ss_pred H--HHHHHHHcCCcceeeccch
Q 042991 69 V--RIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 ~--~~~~~~~~ga~d~l~kP~~ 88 (93)
. ...++++.|+++||.||+.
T Consensus 111 ~~~~~~~~~~~ga~~~l~KP~~ 132 (164)
T 3t8y_A 111 GAAITIEALRNGAVDFITKPHG 132 (164)
T ss_dssp TCHHHHHHHHTTCCEEEECSSS
T ss_pred chHHHHHHHHcCcCEEEeCCCC
Confidence 3 5668999999999999987
No 100
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.23 E-value=5.8e-11 Score=65.25 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=66.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccC-ccc---------C-CCchHHH---hhhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLD-EEQ---------S-ANGFDVR---TIYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~-~~~---------~-~~~~d~l---~~~~~~~pii~lt~~~ 66 (93)
+||++..+..++..|+..||+ +..+.++.++++.+... .++ + ..|++++ ....+.+|+|++|+..
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 11 ADDEAILLLDFESTLTDAGFL-VTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp ECSSHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred EcCcHHHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 578999999999999988999 99999999999998654 321 2 3455553 3333789999999988
Q ss_pred CHHHHHHHHHcCCcceeeccchh
Q 042991 67 ILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+.....++++.| +|+.||+..
T Consensus 90 ~~~~~~~~~~~~--~~l~kP~~~ 110 (132)
T 2rdm_A 90 ALEWASNGVPDS--IILEKPFTS 110 (132)
T ss_dssp CTTHHHHSCTTC--EEEESSCCH
T ss_pred cHHHHHhhcCCc--ceEeCCCCH
Confidence 877776666665 799999863
No 101
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.22 E-value=6.9e-11 Score=65.91 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHHHh---hhhcCCcEEEEcCCCC
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRT---IYSREIPVVIMSPEII 67 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~~ 67 (93)
+||++..+..+...|+.. ++..+..+.++.+|++.+....++ +..|++++. ...+..|||++|+..+
T Consensus 15 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 94 (143)
T 2qv0_A 15 VEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE 94 (143)
T ss_dssp ECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT
T ss_pred EcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH
Confidence 588999999999999875 676345899999999988644321 234555533 3225677888888743
Q ss_pred HHHHHHHHHcCCcceeeccch
Q 042991 68 LVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~ 88 (93)
...++++.|+++|+.||+.
T Consensus 95 --~~~~~~~~g~~~~l~KP~~ 113 (143)
T 2qv0_A 95 --HAVEAFELEAFDYILKPYQ 113 (143)
T ss_dssp --THHHHHHTTCSEEEESSCC
T ss_pred --HHHHHHhCCcceEEeCCCC
Confidence 5667899999999999986
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.21 E-value=1.2e-11 Score=80.07 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceEEeCCHHHHHHHhcc-Cccc---------CCCchHHHh---hhhcCCcEEEEcCCC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLYCSCSGRRALQFLGL-DEEQ---------SANGFDVRT---IYSREIPVVIMSPEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~-~~~~---------~~~~~d~l~---~~~~~~pii~lt~~~ 66 (93)
|||++..+..++.+|+. .++. +..+.++.+|++.+.. ..++ +++|++++. ...+.+|||++|+..
T Consensus 9 vDD~~~~~~~l~~~L~~~~~~~-v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~ 87 (400)
T 3sy8_A 9 LEDEPFQRLVAVTALKKVVPGS-ILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVD 87 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHCSEE-EEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCC
T ss_pred EcCCHHHHHHHHHHHHhcCCcE-EEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCch
Confidence 58999999999999997 5678 8999999999999864 2321 345666633 333666777777766
Q ss_pred CH-----HHHHHHHHcCCcceeeccch
Q 042991 67 IL-----VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~-----~~~~~~~~~ga~d~l~kP~~ 88 (93)
.. ....++++.|+++|+.||++
T Consensus 88 ~~~~~~~~~~~~a~~~ga~~yl~KP~~ 114 (400)
T 3sy8_A 88 PILRQATISMIECLGLNFLGDLGKPFS 114 (400)
T ss_dssp GGGHHHHHHHHHTTTCEEEEECCSSCC
T ss_pred HHHHHHHHHHHHHcCCeeccCcCCCcC
Confidence 65 56677889999999999996
No 103
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.18 E-value=4e-11 Score=66.80 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhh--------hcCCcEEEEc
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIY--------SREIPVVIMS 63 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~--------~~~~pii~lt 63 (93)
+||++..+..++.+|+..|+. +..+.++.+|++.+....++ +.+|++++..+ .+.+|++++|
T Consensus 16 vdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s 94 (140)
T 3c97_A 16 AEDNDICRLVAAKALEKCTND-ITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAIT 94 (140)
T ss_dssp ECCCHHHHHHHHHHHTTTCSE-EEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEE
T ss_pred EcCCHHHHHHHHHHHHHcCCc-eEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEe
Confidence 588999999999999988898 99999999999988644321 23566653222 1578999999
Q ss_pred CCCCHHHHHHHHHcCCcceeeccchh
Q 042991 64 PEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 64 ~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+........ +.|+++|+.||++.
T Consensus 95 ~~~~~~~~~---~~g~~~~l~KP~~~ 117 (140)
T 3c97_A 95 ADTIDDDRP---GAELDEYVSKPLNP 117 (140)
T ss_dssp SSCCSCCCC---CSSCSEEEESSCCH
T ss_pred CccchhHHH---hCChhheEeCCCCH
Confidence 866544332 78999999999863
No 104
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.18 E-value=1.1e-10 Score=74.74 Aligned_cols=88 Identities=20% Similarity=0.153 Sum_probs=67.3
Q ss_pred CCCcHHHHHHHHHHHhhc-CCCceEEeCCHHHHHHHhccCccc---------CCCchHHHhhhh--cCCcEEEEcCCCCH
Q 042991 1 LNDSFVDRKVIERLLTIS-SSRDLYCSCSGRRALQFLGLDEEQ---------SANGFDVRTIYS--REIPVVIMSPEIIL 68 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~-~~~~v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~~~--~~~pii~lt~~~~~ 68 (93)
|||++..+..++.+|+.. +|+.+..+.++.+|++.++...++ +++|++++..+. ..+|+|++|+..+.
T Consensus 9 VDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~mp~~dGlell~~l~~~~p~pVIvlS~~~~~ 88 (349)
T 1a2o_A 9 VDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGK 88 (349)
T ss_dssp ECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHH
T ss_pred EECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHhcCCCcEEEEECCCcc
Confidence 589999999999999975 777456999999999988643321 235666533322 33999999988775
Q ss_pred --HHHHHHHHcCCcceeeccch
Q 042991 69 --VRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 69 --~~~~~~~~~ga~d~l~kP~~ 88 (93)
+...++++.|+++|+.||+.
T Consensus 89 ~~~~~~~al~~Ga~d~l~KP~~ 110 (349)
T 1a2o_A 89 GSEVTLRALELGAIDFVTKPQL 110 (349)
T ss_dssp HHHHHHHHHHHTCCEEEECSSS
T ss_pred cHHHHHHHHhCCceEEEECCCC
Confidence 34778999999999999986
No 105
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.15 E-value=1e-11 Score=74.51 Aligned_cols=88 Identities=10% Similarity=-0.099 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHHHHHhh-cCCCceE-EeCCHHHHHHH-hccCccc---------CCCchHH---Hhh-hhcCCcEEEEcC
Q 042991 1 LNDSFVDRKVIERLLTI-SSSRDLY-CSCSGRRALQF-LGLDEEQ---------SANGFDV---RTI-YSREIPVVIMSP 64 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~-~~~~~v~-~~~~~~~a~~~-~~~~~~~---------~~~~~d~---l~~-~~~~~pii~lt~ 64 (93)
|||++..+..++.+|+. .||. +. .+.++.+++.. +....++ +++|+++ +.. ..+++|||++|+
T Consensus 13 vdD~~~~~~~l~~~L~~~~~~~-v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~ 91 (225)
T 3klo_A 13 LSDVCMQSRLLKEALESKLPLA-LEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINC 91 (225)
T ss_dssp ESCCSHHHHHHHHHHHHHSSEE-EEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred EcCcHHHHHHHHHHHhhCCCce-EEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEEC
Confidence 58999999999999984 5777 54 34556665543 4433321 2234444 334 347899999999
Q ss_pred CCCHHHHHHHHHcCCcceeeccchh
Q 042991 65 EIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 65 ~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
..+......+++.|+++|+.||+..
T Consensus 92 ~~~~~~~~~~~~~Ga~~~l~Kp~~~ 116 (225)
T 3klo_A 92 PQDIEHKLLFKWNNLAGVFYIDDDM 116 (225)
T ss_dssp CTTCCHHHHTTSTTEEEEEETTCCH
T ss_pred CcchhHHHHHHHhCCCEEEecCCCH
Confidence 9888888889999999999999873
No 106
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.15 E-value=1.6e-11 Score=85.04 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCcH-HH-------HHHHHHHHhhcCCCceEEeCCHHHHHHHhccCc-cc------CCCc----hH---H---Hhhhhc
Q 042991 1 LNDSF-VD-------RKVIERLLTISSSRDLYCSCSGRRALQFLGLDE-EQ------SANG----FD---V---RTIYSR 55 (93)
Q Consensus 1 vdd~~-~~-------~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~------~~~~----~d---~---l~~~~~ 55 (93)
|||+. .. ++.|+..|++.||+ |..+.++++|+..++... .+ ++++ .+ + ++....
T Consensus 6 VdDd~~~~~~~~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~ 84 (755)
T 2vyc_A 6 VESEFLHQDTWVGNAVERLADALSQQNVT-VIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQ 84 (755)
T ss_dssp ECCTTSTTSHHHHHHHHHHHHHHHHTTCE-EEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHHHST
T ss_pred EeCCccccccccHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHHhCC
Confidence 46776 66 89999999999999 999999999999997543 21 2233 33 3 333336
Q ss_pred CCcEEEEcCCCC-HHHHHHHHHcCCcceeeccchh
Q 042991 56 EIPVVIMSPEII-LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 56 ~~pii~lt~~~~-~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.+||+++|+..+ .++....+..|++||+.||++.
T Consensus 85 ~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~ 119 (755)
T 2vyc_A 85 NVPVFLLGDREKALAAMDRDLLELVDEFAWILEDT 119 (755)
T ss_dssp TCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSC
T ss_pred CCCEEEEecCCcchhhccHhHhhcCCceEeCCCCC
Confidence 899999999877 7778888999999999999963
No 107
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.14 E-value=7.5e-11 Score=69.22 Aligned_cols=84 Identities=11% Similarity=-0.060 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCccc------CCCchH--H---HhhhhcCCcEEEEcCCCCHH
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQ------SANGFD--V---RTIYSREIPVVIMSPEIILV 69 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~------~~~~~d--~---l~~~~~~~pii~lt~~~~~~ 69 (93)
|||++..+..+..+|...||. +..+.++.+++ . ..++ .+++.+ + +....+.+|||++|+..+..
T Consensus 18 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al---~-~~~dlvl~D~~mp~~~g~l~~~~~~~~~~~~ii~lt~~~~~~ 92 (196)
T 1qo0_D 18 LNPPGEVSDALVLQLIRIGCS-VRQCWPPPEAF---D-VPVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPA 92 (196)
T ss_dssp ESCTTHHHHHHHHHHHHHTCE-EEEECSCCSSC---S-SCCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEEECCCSHH
T ss_pred EcCChhHHHHHHHHHHHcCCe-EEEecCchhhC---C-CCCCEEEEeCCCCccchHHHHHHhccCCCCCEEEEEcCCChH
Confidence 588999999999999988999 88888877765 2 1111 223332 2 11111789999999999999
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
...++++.|+++|+.||+..
T Consensus 93 ~~~~a~~~ga~~~l~KP~~~ 112 (196)
T 1qo0_D 93 VLSQIIELECHGVITQPLDA 112 (196)
T ss_dssp HHHHHHHHTCSEEEESSCCG
T ss_pred HHHHHHHcCCCeeEecCcCH
Confidence 99999999999999999863
No 108
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.12 E-value=6e-11 Score=65.88 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhcc-Cccc---------CCCchHHHh---hhhcCCcEEEEc-CCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGL-DEEQ---------SANGFDVRT---IYSREIPVVIMS-PEI 66 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-~~~~---------~~~~~d~l~---~~~~~~pii~lt-~~~ 66 (93)
+||++..+..++.+|+..||. +..+.++.+|++.++. ..++ +..|++++. ...+.+|+|++| +..
T Consensus 21 vdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 99 (138)
T 2b4a_A 21 VEDEPSHATLIQYHLNQLGAE-VTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH 99 (138)
T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC-
T ss_pred ECCCHHHHHHHHHHHHHcCCE-EEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 588999999999999998998 9999999999999875 4321 224555433 323789999999 876
Q ss_pred CHHHHHHHHHcCCcceeeccch
Q 042991 67 ILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 67 ~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+... .+++ +++|+.||+.
T Consensus 100 ~~~~-~~~~---~~~~l~KP~~ 117 (138)
T 2b4a_A 100 ELIE-SSEH---NLSYLQKPFA 117 (138)
T ss_dssp -CCC-CSSS---CEEEEESSCC
T ss_pred CHHH-HHHH---HHheeeCCCC
Confidence 6655 5555 9999999986
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.95 E-value=5.6e-06 Score=49.31 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=45.8
Q ss_pred eEEeCCHHHHHHHhccCccc---------CCCchHHHhh---hhcCCcEEEEcCCCCHHHHHHHHHcCCcceeecc
Q 042991 23 LYCSCSGRRALQFLGLDEEQ---------SANGFDVRTI---YSREIPVVIMSPEIILVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 23 v~~~~~~~~a~~~~~~~~~~---------~~~~~d~l~~---~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP 86 (93)
+..+.++.+|++.+....++ +++|++++.. ..+..++++++.....+...++++.|+++|+.||
T Consensus 8 v~~~~~~~~a~~~~~~~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 8 VDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EECCCSSSTTHHHHHHHCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEECCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 77788899988887543321 2345555333 3356667777776678888899999999999999
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.67 E-value=0.0008 Score=43.93 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcc---------cCCCchHHHhhh-----hcCCcEEEEcCCCC
Q 042991 2 NDSFVDRKVIERLLTISSSRDLYCSCSGRRALQFLGLDEE---------QSANGFDVRTIY-----SREIPVVIMSPEII 67 (93)
Q Consensus 2 dd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~---------~~~~~~d~l~~~-----~~~~pii~lt~~~~ 67 (93)
+|+......+...+.. .+. +....++.+++.. ....+ +.+.|+++.... ...+|++++|+...
T Consensus 159 dd~~~~~~~i~~~L~~-~~~-~~~~~~~~~~~~~-~~~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~ 235 (459)
T 1w25_A 159 DDNERQAQRVAAELGV-EHR-PVIESDPEKAKIS-AGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDD 235 (459)
T ss_dssp CSCHHHHHHHHHHHTT-TSE-EEEECCHHHHHHH-HHSSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTC
T ss_pred CCchhhHHHHHHHHhc-ccc-eeeccCHHHHhhh-ccCCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCc
Confidence 4555566666666653 345 6677788777532 11111 123455542211 27889999999999
Q ss_pred HHHHHHHHHcCCcceeeccchh
Q 042991 68 LVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 68 ~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.....++++.|+++|+.||+..
T Consensus 236 ~~~~~~~l~~Ga~d~~~kp~~~ 257 (459)
T 1w25_A 236 RGRMVKALEIGVNDILSRPIDP 257 (459)
T ss_dssp HHHHHHHHHTTCCEEEESSCCH
T ss_pred hHHHHHHHhccccccccCCCCH
Confidence 9888899999999999999863
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.08 E-value=0.0088 Score=31.85 Aligned_cols=38 Identities=11% Similarity=-0.089 Sum_probs=31.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchhhhcC
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWARLRD 93 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~~~~ 93 (93)
...-+|++-..=+++..++.++.|+. |+..|+..++.|
T Consensus 72 ~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvld 109 (121)
T 3q7r_A 72 EGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILK 109 (121)
T ss_dssp CSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHH
T ss_pred CcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHH
Confidence 44557777777888888999999999 999999987653
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.63 E-value=0.0049 Score=43.05 Aligned_cols=79 Identities=5% Similarity=0.001 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCceEEeCCHHHHHHHhccCcccCCCc-------hHH---HhhhhcCCcEEEEcCCCCHHHHHHHHHc
Q 042991 8 RKVIERLLTISSSRDLYCSCSGRRALQFLGLDEEQSANG-------FDV---RTIYSREIPVVIMSPEIILVRIDRYLED 77 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~~-------~d~---l~~~~~~~pii~lt~~~~~~~~~~~~~~ 77 (93)
...|...|++.||+ |..+.+..+|+..++......+.. .++ ++....++||.+++.......+....-.
T Consensus 19 i~~L~~~Le~~g~~-V~~a~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~~~ 97 (715)
T 3n75_A 19 IRELHRALERLNFQ-IVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLR 97 (715)
T ss_dssp HHHHHHHHHHTTCE-EECCSSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTTSC
T ss_pred HHHHHHHHHHCCcE-EEEeCCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHhCCCCCEEEEecCCcccccchhhhh
Confidence 34566788889999 999999999999997554322211 122 3444489999999987543332111123
Q ss_pred CCcceeeccc
Q 042991 78 GAEDSETCQM 87 (93)
Q Consensus 78 ga~d~l~kP~ 87 (93)
++++|+-+..
T Consensus 98 ~~~~~~~~~~ 107 (715)
T 3n75_A 98 LQISFFEYAL 107 (715)
T ss_dssp CEEEEECCCT
T ss_pred ccCeEEEeCC
Confidence 5666666543
No 113
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=93.06 E-value=0.14 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.++|+|.+++...++...++++.|+++++
T Consensus 173 ~~~Pvia~~g~~~~~~~~~~~~~G~~~~~ 201 (237)
T 3cwo_X 173 TTLPIIASGGAGKMEHFLEAFLAGADAAL 201 (237)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred cCCCEEecCCCCCHHHHHHHHHcCcHHHh
Confidence 68999999999999999999999999986
No 114
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.02 E-value=2.3 Score=26.40 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=47.4
Q ss_pred HHHHhhcCCCce-EEeCCHHHHHHHhccCcc-----c-------CCCchHHHhhh--hcCCcEEEEcCCCCHHHHHHHHH
Q 042991 12 ERLLTISSSRDL-YCSCSGRRALQFLGLDEE-----Q-------SANGFDVRTIY--SREIPVVIMSPEIILVRIDRYLE 76 (93)
Q Consensus 12 ~~~l~~~~~~~v-~~~~~~~~a~~~~~~~~~-----~-------~~~~~d~l~~~--~~~~pii~lt~~~~~~~~~~~~~ 76 (93)
.+.|.+.||..+ ++..+...|......... . .+..++++... ...+|||.=.+-.++++...+++
T Consensus 128 a~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Ame 207 (265)
T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME 207 (265)
T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH
Confidence 344556799833 467777777665432211 0 11223443222 27899998667788999999999
Q ss_pred cCCcceeec
Q 042991 77 DGAEDSETC 85 (93)
Q Consensus 77 ~ga~d~l~k 85 (93)
.|++.++.-
T Consensus 208 LGAdgVlVg 216 (265)
T 1wv2_A 208 LGCEAVLMN 216 (265)
T ss_dssp HTCSEEEES
T ss_pred cCCCEEEEC
Confidence 999998754
No 115
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=89.17 E-value=2.7 Score=26.07 Aligned_cols=75 Identities=11% Similarity=-0.079 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCc--hHH-----Hhh-hhcCCcEEEEcCCCCHHHHHHHH
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANG--FDV-----RTI-YSREIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~--~d~-----l~~-~~~~~pii~lt~~~~~~~~~~~~ 75 (93)
.+....+..|...+..+.+.+++...+..... . ++.. .|+ +.. ...++|+|.-++-.+++++.+..
T Consensus 160 ~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~ 239 (272)
T 3tsm_A 160 ELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLE 239 (272)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHH
Confidence 33344455676657778899998776643211 0 1111 111 111 11468889888888999999999
Q ss_pred HcCCcceee
Q 042991 76 EDGAEDSET 84 (93)
Q Consensus 76 ~~ga~d~l~ 84 (93)
++|++.++.
T Consensus 240 ~~Ga~gvLV 248 (272)
T 3tsm_A 240 KSGIGTFLI 248 (272)
T ss_dssp TTTCCEEEE
T ss_pred HcCCCEEEE
Confidence 999999986
No 116
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=73.21 E-value=14 Score=22.87 Aligned_cols=76 Identities=7% Similarity=-0.142 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCchH--H--Hhhhh----cCCcEEEEcCCCCHHHHHHHH
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANGFD--V--RTIYS----REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~~d--~--l~~~~----~~~pii~lt~~~~~~~~~~~~ 75 (93)
.+..+-...|-..+..+.+.+|....+..... . ++..++ + ...+. .+..+|.-|+-.+++++.+..
T Consensus 144 ~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~ 223 (258)
T 4a29_A 144 SLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELR 223 (258)
T ss_dssp HHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHH
Confidence 33444456776668889999997766643211 0 111111 1 11111 455566677778899998989
Q ss_pred HcCCcceeec
Q 042991 76 EDGAEDSETC 85 (93)
Q Consensus 76 ~~ga~d~l~k 85 (93)
+.|++.||.-
T Consensus 224 ~~G~~a~LVG 233 (258)
T 4a29_A 224 KLGVNAFLIS 233 (258)
T ss_dssp HTTCCEEEEC
T ss_pred HCCCCEEEEC
Confidence 9999999874
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=73.07 E-value=6.7 Score=23.51 Aligned_cols=72 Identities=8% Similarity=-0.075 Sum_probs=45.2
Q ss_pred HHHhhcCCCceEEeCCHHHHHHHhccCc-cc-------------CCCchHHHhhhh-cCCcEEEEcCCCCHHHHHHHHHc
Q 042991 13 RLLTISSSRDLYCSCSGRRALQFLGLDE-EQ-------------SANGFDVRTIYS-REIPVVIMSPEIILVRIDRYLED 77 (93)
Q Consensus 13 ~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~-------------~~~~~d~l~~~~-~~~pii~lt~~~~~~~~~~~~~~ 77 (93)
+.+++.|......+.+.+++....+..- .. ....++++..+. .++|+|.-.+-.+++...++++.
T Consensus 123 ~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~~~ 202 (229)
T 3q58_A 123 TRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEH 202 (229)
T ss_dssp HHHHHTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHHHT
T ss_pred HHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHc
Confidence 3345556544556778888776653211 00 012234343332 37999988887889999999999
Q ss_pred CCcceee
Q 042991 78 GAEDSET 84 (93)
Q Consensus 78 ga~d~l~ 84 (93)
|++.++.
T Consensus 203 GadgV~V 209 (229)
T 3q58_A 203 GAWAVTV 209 (229)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999874
No 118
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=71.62 E-value=7.5 Score=23.33 Aligned_cols=72 Identities=8% Similarity=-0.101 Sum_probs=44.8
Q ss_pred HHHhhcCCCceEEeCCHHHHHHHhccCc-cc-------------CCCchHHHhhhh-cCCcEEEEcCCCCHHHHHHHHHc
Q 042991 13 RLLTISSSRDLYCSCSGRRALQFLGLDE-EQ-------------SANGFDVRTIYS-REIPVVIMSPEIILVRIDRYLED 77 (93)
Q Consensus 13 ~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~-------------~~~~~d~l~~~~-~~~pii~lt~~~~~~~~~~~~~~ 77 (93)
+.+++.|......+.+.+++....+..- .. ....++++..+. .++|+|.-.+-.+.+...++++.
T Consensus 123 ~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~~~ 202 (232)
T 3igs_A 123 ARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRY 202 (232)
T ss_dssp HHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHc
Confidence 3345556544556777888776643211 00 012334433332 38999988877789999999999
Q ss_pred CCcceee
Q 042991 78 GAEDSET 84 (93)
Q Consensus 78 ga~d~l~ 84 (93)
|++.++.
T Consensus 203 GadgV~V 209 (232)
T 3igs_A 203 GAWAVTV 209 (232)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999874
No 119
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.05 E-value=9.8 Score=19.87 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCCceEEeCCHHHHHHHhc
Q 042991 7 DRKVIERLLTISSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 7 ~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~ 37 (93)
-.+..++-++..||+ +.-+.+-++|+..++
T Consensus 89 eleefkrkiesqgye-vrkvtddeealkivr 118 (134)
T 2lci_A 89 ELEEFKRKIESQGYE-VRKVTDDEEALKIVR 118 (134)
T ss_dssp HHHHHHHHHHTTTCE-EEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCee-eeecCChHHHHHHHH
Confidence 344455556667777 777778777777664
No 120
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=67.94 E-value=7.8 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|+++..+=.+.+.+.++++.||+.++.-
T Consensus 177 ~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 177 AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 6899998888778889999999999998754
No 121
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=66.24 E-value=9.3 Score=22.95 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+|...+-.+.+.+.+.++.|++.++.=
T Consensus 199 ~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 199 TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 5889999888888889888888999987653
No 122
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=65.66 E-value=10 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=26.5
Q ss_pred cC-CcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 RE-IPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~-~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.. +|||+=.+-.++++...+++.|++..+.-
T Consensus 176 ~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 176 ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp TTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 56 99998777788999999999999998753
No 123
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=63.21 E-value=13 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+|...+-.+.+.+.+..+.|++.++.
T Consensus 195 ~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 224 (252)
T 1ka9_F 195 VGVPVIASGGAGRMEHFLEAFQAGAEAALA 224 (252)
T ss_dssp CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEeCCCCCHHHHHHHHHCCCHHHHH
Confidence 589999888888888888888999998765
No 124
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=62.92 E-value=14 Score=21.98 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+.+.++.+.|++.++.
T Consensus 194 ~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 194 TTLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 478999887777788888888999998765
No 125
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=62.10 E-value=14 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++...+-.+.+...++++.|++.++.
T Consensus 174 ~~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 174 VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 478999777766899999999999988764
No 126
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=62.06 E-value=5.6 Score=23.72 Aligned_cols=27 Identities=11% Similarity=-0.137 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCceEEeCC
Q 042991 1 LNDSFVDRKVIERLLTISSSRDLYCSCS 28 (93)
Q Consensus 1 vdd~~~~~~~l~~~l~~~~~~~v~~~~~ 28 (93)
++|+...+..+...|+..|++ +..+.+
T Consensus 17 v~d~~~~~~~l~~~L~~~g~~-v~~~~~ 43 (254)
T 2ayx_A 17 AVRNASLCQFLETSLQRSGIV-VTTYEG 43 (254)
T ss_dssp ECCCHHHHHHHHHHHTTTTEE-EEECSS
T ss_pred EcCCHHHHHHHHHHHHHCCCE-EEEecC
Confidence 578999999999999999998 877764
No 127
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=61.41 E-value=13 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++...-.+.+....+++.|++..+.
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 578999888888888999999999988665
No 128
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=59.86 E-value=16 Score=21.37 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+...++++.|++.++.
T Consensus 197 ~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 197 VRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 578999877777778888888999998765
No 129
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=58.74 E-value=16 Score=23.11 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+.+++.+++.+||+.+..
T Consensus 250 ~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 250 PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 479999888888899999999999988654
No 130
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=58.25 E-value=19 Score=22.63 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred cCCcEEEEc-CC-CCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMS-PE-IILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt-~~-~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||+++. +. .+++...++++.|+++++.
T Consensus 197 ~~IPVV~IAnGGI~TpedA~~~le~GaDGVmV 228 (291)
T 3o07_A 197 GKLPVVNFAAGGVATPADAALLMQLGCDGVFV 228 (291)
T ss_dssp TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEE
T ss_pred cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEE
Confidence 678998763 33 4788999999999999765
No 131
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=55.15 E-value=20 Score=21.08 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++||++..+-.+.+.+.+++++|++.++.
T Consensus 186 ~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 186 GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 78999777767799999999999988754
No 132
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=53.81 E-value=8.4 Score=23.63 Aligned_cols=36 Identities=8% Similarity=-0.166 Sum_probs=25.0
Q ss_pred HhhhhcCCcEEEEcCC------CCHHHHHHHHHcCCcceeec
Q 042991 50 RTIYSREIPVVIMSPE------IILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 50 l~~~~~~~pii~lt~~------~~~~~~~~~~~~ga~d~l~k 85 (93)
+......+|+++++=. +-+....++.++|+++.|..
T Consensus 82 ~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~Iip 123 (252)
T 3tha_A 82 LARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVP 123 (252)
T ss_dssp HHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECT
T ss_pred HHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 3333345899998843 34556667889999999875
No 133
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=50.88 E-value=41 Score=20.69 Aligned_cols=74 Identities=11% Similarity=-0.087 Sum_probs=45.1
Q ss_pred HHHHHhhcCCCceEEeCCHHHHHHHhccCc-cc-----CC----CchHHHhhhh---c-CCcEEEEcCCCCHHHHHHHHH
Q 042991 11 IERLLTISSSRDLYCSCSGRRALQFLGLDE-EQ-----SA----NGFDVRTIYS---R-EIPVVIMSPEIILVRIDRYLE 76 (93)
Q Consensus 11 l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~~-----~~----~~~d~l~~~~---~-~~pii~lt~~~~~~~~~~~~~ 76 (93)
+....++.|...+..+.+.+++.......- .. ++ ..++.+..+. + ++|+|.-++-.+.+.+.+..+
T Consensus 154 l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~ 233 (272)
T 3qja_A 154 MLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAG 233 (272)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHH
Confidence 344445567654566788888665543111 00 00 1122222221 2 688998888788999999999
Q ss_pred cCCcceee
Q 042991 77 DGAEDSET 84 (93)
Q Consensus 77 ~ga~d~l~ 84 (93)
+|++.++.
T Consensus 234 ~GadgvlV 241 (272)
T 3qja_A 234 AGADAVLV 241 (272)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999886
No 134
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.81 E-value=0.34 Score=32.43 Aligned_cols=20 Identities=0% Similarity=-0.203 Sum_probs=16.1
Q ss_pred HHHHHHHcCCcceeeccchh
Q 042991 70 RIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~kP~~~ 89 (93)
..+++++.||.||+.||+..
T Consensus 121 ~av~a~~~ga~d~~~Kp~~~ 140 (489)
T 3hu3_A 121 DTVEGITGNLFEVYLKPYFL 140 (489)
T ss_dssp GGSSSCCSCHHHHTHHHHHT
T ss_pred cccccccchhHHHHhHHHHh
Confidence 34457889999999999964
No 135
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=48.56 E-value=34 Score=19.12 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCceEEe---CCHHHHHHHhccCccc--CCCc-----hHH-------Hhhhh-cCCcEEEEcCCCCHH
Q 042991 8 RKVIERLLTISSSRDLYCS---CSGRRALQFLGLDEEQ--SANG-----FDV-------RTIYS-REIPVVIMSPEIILV 69 (93)
Q Consensus 8 ~~~l~~~l~~~~~~~v~~~---~~~~~a~~~~~~~~~~--~~~~-----~d~-------l~~~~-~~~pii~lt~~~~~~ 69 (93)
...+..+|+..||+ |... .+.++..+.+...... .++. ++. +.... .+++|+ +.+.....
T Consensus 35 ~~~va~~l~~~G~e-Vi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~-vGG~~~~~ 112 (161)
T 2yxb_A 35 AKVVARALRDAGFE-VVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV-LGGTIPIP 112 (161)
T ss_dssp HHHHHHHHHHTTCE-EECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEECCCHH
T ss_pred HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCchh
Confidence 45677888999999 6543 4566777666544322 1111 111 22221 356666 44554454
Q ss_pred HHHHHHHcCCcceee
Q 042991 70 RIDRYLEDGAEDSET 84 (93)
Q Consensus 70 ~~~~~~~~ga~d~l~ 84 (93)
....+.+.|++.++.
T Consensus 113 ~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 113 DLEPLRSLGIREIFL 127 (161)
T ss_dssp HHHHHHHTTCCEEEC
T ss_pred cHHHHHHCCCcEEEC
Confidence 444456889987553
No 136
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.62 E-value=33 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+||++-.+=++.+.+.+..+.||+.++.-
T Consensus 200 ~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 200 TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5789998777676888888889999987753
No 137
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=47.42 E-value=27 Score=22.02 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||.-.+-.+..++.+++.+||+...
T Consensus 209 ~~ipVIa~GGI~~g~Dv~kalalGAdaV~ 237 (336)
T 1ypf_A 209 ASKPIIADGGIRTNGDVAKSIRFGATMVM 237 (336)
T ss_dssp CSSCEEEESCCCSTHHHHHHHHTTCSEEE
T ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 47999988888888999999999998854
No 138
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=46.66 E-value=30 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=25.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++|||.-.+-.+..++.+++.+||+.+..
T Consensus 279 ~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 279 GRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp TSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 379999888888899999999999988654
No 139
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=46.57 E-value=30 Score=21.38 Aligned_cols=29 Identities=10% Similarity=-0.224 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
+++|||..-+-.+.++..+++.+||+...
T Consensus 243 ~~ipvi~~GGI~~~~da~~~l~~GAd~V~ 271 (314)
T 2e6f_A 243 PDKLVFGCGGVYSGEDAFLHILAGASMVQ 271 (314)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHHTCSSEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 48999988887889999999999988753
No 140
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=46.50 E-value=22 Score=20.96 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc---CCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLED---GAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~---ga~d~l~ 84 (93)
..+||++-.+-.+.+.+.++++. |++.++.
T Consensus 189 ~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 189 TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 57899988777778899999988 9998764
No 141
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=46.44 E-value=31 Score=20.46 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++--+-.+.+.+.++++.|++..+.
T Consensus 78 ~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 78 TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 578999877778888888899999887653
No 142
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=46.14 E-value=32 Score=22.03 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCC--cceee
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGA--EDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga--~d~l~ 84 (93)
..+|+|++++..+.+.-. .|+++|+ .+++.
T Consensus 244 ~~~P~v~lsgG~~~~~fl~~v~~A~~aGa~f~Gv~~ 279 (332)
T 3iv3_A 244 TDLPYIYLSAGVSAELFQETLVFAHKAGAKFNGVLC 279 (332)
T ss_dssp CSSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 789999999876654333 4678999 88764
No 143
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=45.09 E-value=28 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+|+=-.=.+.+++.+|+++||+..-+
T Consensus 149 ~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 149 LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 788998655567788888999999987654
No 144
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=44.91 E-value=17 Score=22.16 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCC------HHHHHHHHHcCCcceeecc
Q 042991 56 EIPVVIMSPEII------LVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 56 ~~pii~lt~~~~------~~~~~~~~~~ga~d~l~kP 86 (93)
++|+++++-.+. ......+.++|+++++.-.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~d 130 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPD 130 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTT
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECC
Confidence 889999854331 3455667899999888753
No 145
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=44.57 E-value=33 Score=21.36 Aligned_cols=35 Identities=6% Similarity=-0.058 Sum_probs=23.5
Q ss_pred cCCcEEEEcCC--CCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPE--IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~--~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+++-+|+++.. ...+...+++++|.+=++=||+..
T Consensus 66 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~ 102 (337)
T 3ip3_A 66 EKPDILVINTVFSLNGKILLEALERKIHAFVEKPIAT 102 (337)
T ss_dssp HCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCS
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCC
Confidence 34444444443 335566788999999999999863
No 146
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=44.08 E-value=70 Score=21.40 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCceEEeCCHHHHHHHhccCcc-c-----CCCch--HH--Hhh----hhcCCcEEEEcCCCCHHHHHHHH
Q 042991 10 VIERLLTISSSRDLYCSCSGRRALQFLGLDEE-Q-----SANGF--DV--RTI----YSREIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 10 ~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~-~-----~~~~~--d~--l~~----~~~~~pii~lt~~~~~~~~~~~~ 75 (93)
.+....++.|...+..+.+.+|+...+..... . ++..+ |+ ... ...++++|.=++-.+++++.++.
T Consensus 148 ~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~ 227 (452)
T 1pii_A 148 QLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELS 227 (452)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHH
Confidence 33444455676667888999998877643221 0 11111 11 111 11467788888888899999988
Q ss_pred HcCCcceeec
Q 042991 76 EDGAEDSETC 85 (93)
Q Consensus 76 ~~ga~d~l~k 85 (93)
++ ++.++.-
T Consensus 228 ~~-a~avLVG 236 (452)
T 1pii_A 228 HF-ANGFLIG 236 (452)
T ss_dssp TT-CSEEEEC
T ss_pred Hh-CCEEEEc
Confidence 88 9988753
No 147
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=44.07 E-value=26 Score=20.63 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc---CCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLED---GAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~---ga~d~l~ 84 (93)
..+||+.-.+-.+.+...++++. |++.++.
T Consensus 192 ~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 192 TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 57899988777778888888888 9988664
No 148
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=43.78 E-value=32 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||.-.+-.+..++.+++..||+.+..
T Consensus 284 ~ipVia~GGI~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 284 RVPIVFDSGVRRGEHVAKALASGADVVAL 312 (368)
T ss_dssp SSCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 79999888888899999999999988654
No 149
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=43.59 E-value=35 Score=21.40 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee-eccch
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE-TCQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l-~kP~~ 88 (93)
..+|||...+-.+..++.+++..||+.+. -.|+-
T Consensus 255 ~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 255 PHLPLVASGGVYTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence 37999988888999999999999998753 34543
No 150
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=43.44 E-value=41 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.024 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+.+.+++..|++.+..
T Consensus 161 ~~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 161 ISIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 578999776667788888999999987543
No 151
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=42.97 E-value=38 Score=21.81 Aligned_cols=30 Identities=17% Similarity=-0.069 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++.+||+.+..
T Consensus 271 ~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 271 GKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp TSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 479999888888999999999999998543
No 152
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=42.82 E-value=27 Score=20.59 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHc-----C-Ccceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLED-----G-AEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~-----g-a~d~l~ 84 (93)
..+|+|...+-.+.+...+.++. | ++.++.
T Consensus 187 ~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~v 222 (241)
T 1qo2_A 187 AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEe
Confidence 58899988888888999888888 9 988764
No 153
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=42.66 E-value=37 Score=20.95 Aligned_cols=28 Identities=18% Similarity=-0.098 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||..-+-.+.++..+++.+||+.+.
T Consensus 242 ~ipvi~~GGI~~~~da~~~l~~GAd~V~ 269 (311)
T 1jub_A 242 EIQIIGTGGIETGQDAFEHLLCGATMLQ 269 (311)
T ss_dssp TSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 7999988888889999999999987653
No 154
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=42.22 E-value=34 Score=22.12 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++.+||+.+..
T Consensus 255 ~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 255 TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 478999877777889999999999988654
No 155
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=41.75 E-value=39 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.+|||..-+-.+.+++.+++..||+.+
T Consensus 289 ~ipVi~~GGI~~~~da~~~l~~GAd~V 315 (336)
T 1f76_A 289 RLPIIGVGGIDSVIAAREKIAAGASLV 315 (336)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 899998888888999999999998765
No 156
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=41.47 E-value=46 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.--+-.+...+.+++.+||+....
T Consensus 210 ~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 210 YGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 479999776666888999999999987654
No 157
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=41.02 E-value=33 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||..-+-.+.+...++++.||+...
T Consensus 240 ~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 240 VDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp CSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 47899976666688899999999988754
No 158
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=39.95 E-value=44 Score=20.98 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+.+.+++..|++.+..
T Consensus 175 ~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 175 VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 578998777667788999999999988654
No 159
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=39.57 E-value=37 Score=22.12 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee-ccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET-CQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~-kP~ 87 (93)
..+|||+-.+-.+..++.+++..||+.+.. .|+
T Consensus 306 ~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 306 GKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp TSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 369999877778899999999999988543 344
No 160
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=39.36 E-value=49 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||+--+-.+..++.+++.+||+....
T Consensus 358 ~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 358 HGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 369999877778899999999999998765
No 161
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=39.00 E-value=47 Score=21.36 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.--+=.+...+.+++.+||+....
T Consensus 206 ~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 206 FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 478999766666888999999999988654
No 162
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.68 E-value=48 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++-.+-.+.+.+.+++..|++.+..
T Consensus 171 ~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 171 LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 478998766666788888889999988654
No 163
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=38.46 E-value=45 Score=22.32 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++.+||+....
T Consensus 331 ~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 331 TGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 379999877777899999999999988654
No 164
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=38.13 E-value=33 Score=20.73 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++.+.+- +.+.+.+..+.|++.+..
T Consensus 190 ~~iPvvAiGGI-~~~ni~~~~~aGa~gvav 218 (243)
T 3o63_A 190 DDKPWFAIGGI-NAQRLPAVLDAGARRIVV 218 (243)
T ss_dssp -CCCEEEESSC-CTTTHHHHHHTTCCCEEE
T ss_pred CCCCEEEecCC-CHHHHHHHHHcCCCEEEE
Confidence 37899988765 666777888999998765
No 165
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=37.76 E-value=60 Score=19.13 Aligned_cols=31 Identities=13% Similarity=-0.027 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|+++-.+-+..+.+.+.++.|++.++.-
T Consensus 190 ~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 190 CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 4789887666566588888889999987653
No 166
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=37.53 E-value=55 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++.+||+....
T Consensus 333 ~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 333 YGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 379999877777899999999999988664
No 167
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=37.27 E-value=50 Score=21.68 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.--+-.+...+.+++.+||+....
T Consensus 245 ~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 245 FGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp TTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred cCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 478999776767889999999999988654
No 168
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=37.24 E-value=38 Score=21.74 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=22.8
Q ss_pred cCCcEE--EEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVV--IMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii--~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++ ...+=.+++...+.++.|++.++.
T Consensus 239 ~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~V 270 (330)
T 2yzr_A 239 GRLPVVNFAAGGVATPADAALMMQLGSDGVFV 270 (330)
T ss_dssp TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEE
T ss_pred CCCCeEEEEECCCCCHHHHHHHHHcCcCEEee
Confidence 568886 334444689999999999999875
No 169
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=36.95 E-value=48 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=22.6
Q ss_pred cCCcEEE--EcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVI--MSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~--lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++ -.+-.+++.+.+++++|++.++.
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 4678874 33444788888899999999875
No 170
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=36.78 E-value=59 Score=20.71 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+||++..+-.+.+.+.++++.|++.+..
T Consensus 207 ~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 207 VDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 578998766655888889999999987543
No 171
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=36.58 E-value=56 Score=20.84 Aligned_cols=33 Identities=6% Similarity=-0.117 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce-eeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS-ETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~-l~kP~ 87 (93)
..+|||.-.+-.+..++.+++.+||+.. +-+|+
T Consensus 222 ~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 222 LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 4689998777788999999999999875 33444
No 172
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=36.50 E-value=28 Score=20.06 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++||++..+-+ .+.+.++++.|++.+..
T Consensus 148 ~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 148 DIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp TCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred CCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 58888766654 67777888999988764
No 173
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=36.41 E-value=58 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||.-.+-.+..++.+++.+||+...
T Consensus 339 ~~ipvia~GGI~~~~di~kala~GAd~V~ 367 (494)
T 1vrd_A 339 YDVPIIADGGIRYSGDIVKALAAGAESVM 367 (494)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 47899987777889999999999998754
No 174
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=36.20 E-value=45 Score=19.34 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++..+- +.+.+.++++.|++.+..
T Consensus 163 ~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 163 ISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 47898866554 788888889999987654
No 175
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=35.99 E-value=66 Score=20.17 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+..||.+-.. +.++..+++++|+|-.....++
T Consensus 197 ~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~ 228 (287)
T 3tqv_A 197 SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFS 228 (287)
T ss_dssp TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCC
Confidence 5667776443 4467778899998776655443
No 176
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=35.50 E-value=42 Score=21.56 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=23.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 57 IPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 57 ~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+|||.-.+-.+..++.+++.+||+.+..
T Consensus 278 ipvia~GGI~~~~dv~kalalGA~~V~i 305 (393)
T 2qr6_A 278 VHIIADGSIENSGDVVKAIACGADAVVL 305 (393)
T ss_dssp CEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8999777777899999999999988543
No 177
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=34.90 E-value=24 Score=21.43 Aligned_cols=28 Identities=7% Similarity=-0.285 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++|+|..++-.+.+++.+..+ |++.++.
T Consensus 208 ~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 208 GGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 788998888788999988888 9999875
No 178
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=34.65 E-value=64 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||.-.+-.+..++.+++.+||+...
T Consensus 357 ~~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 357 FGVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 47999987777788999999999998754
No 179
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=34.57 E-value=60 Score=20.91 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||..-+-.+.+++.+.+.+||+.+.
T Consensus 298 ~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 298 RVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 8999998888899999999999997654
No 180
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=34.31 E-value=47 Score=22.47 Aligned_cols=29 Identities=14% Similarity=-0.017 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|||+-.+-.+..++.+++.+||+.+..
T Consensus 403 ~ipVia~GGI~~g~Dv~kaLalGAdaV~i 431 (511)
T 1kbi_A 403 KLEVFVDGGVRRGTDVLKALCLGAKGVGL 431 (511)
T ss_dssp TBEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 78999888888899999999999988543
No 181
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=34.02 E-value=97 Score=20.16 Aligned_cols=34 Identities=12% Similarity=-0.062 Sum_probs=23.7
Q ss_pred cCCcEEEEcCC--CCHHHHHHHHHcCCcceeeccch
Q 042991 55 REIPVVIMSPE--IILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~--~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+++-+|+++.. ...+...+++++|.+=++-||+.
T Consensus 90 ~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a 125 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGA 125 (444)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCC
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCc
Confidence 34545555543 34666778899999889999985
No 182
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=33.97 E-value=58 Score=21.02 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++|||.-.+-.+..++.+++.+||+.+..
T Consensus 266 ~~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 266 PDSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp TTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 468999877778899999999999988654
No 183
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=33.29 E-value=83 Score=19.63 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 76 grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 110 (309)
T 3fkr_A 76 GRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAM 110 (309)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEc
Confidence 679999988877665554 4567899997664
No 184
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=33.26 E-value=62 Score=20.68 Aligned_cols=28 Identities=11% Similarity=-0.115 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||..-+-.+.+++.+.+.+||+.+.
T Consensus 275 ~ipIIg~GGI~s~~da~~~l~aGAd~V~ 302 (345)
T 3oix_A 275 SIQIIGTGGVXTGRDAFEHILCGASMVQ 302 (345)
T ss_dssp TSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCcEEEECCCCChHHHHHHHHhCCCEEE
Confidence 7899998888899999999999998753
No 185
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=32.77 E-value=85 Score=19.12 Aligned_cols=74 Identities=9% Similarity=-0.105 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCceEEeCCHHHHHHHhcc-Ccc-c-----CCCch--HH--Hhhhh----cCCcEEEEcCCCCHHHHHHHH
Q 042991 11 IERLLTISSSRDLYCSCSGRRALQFLGL-DEE-Q-----SANGF--DV--RTIYS----REIPVVIMSPEIILVRIDRYL 75 (93)
Q Consensus 11 l~~~l~~~~~~~v~~~~~~~~a~~~~~~-~~~-~-----~~~~~--d~--l~~~~----~~~pii~lt~~~~~~~~~~~~ 75 (93)
+....++.|...+..+.+.+++...+.. ... . ++..+ |+ ...+. .+.++|.=++-.+++++.++.
T Consensus 142 l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~ 221 (251)
T 1i4n_A 142 IYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLR 221 (251)
T ss_dssp HHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHT
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHH
Confidence 3344445676657788899998777664 321 0 11111 11 11111 345677666667788988888
Q ss_pred HcCCcceeec
Q 042991 76 EDGAEDSETC 85 (93)
Q Consensus 76 ~~ga~d~l~k 85 (93)
++ ++.++.-
T Consensus 222 ~~-a~avLVG 230 (251)
T 1i4n_A 222 GK-VNAVLVG 230 (251)
T ss_dssp TT-CSEEEEC
T ss_pred Hh-CCEEEEc
Confidence 88 9988763
No 186
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=32.60 E-value=25 Score=18.09 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCcceee
Q 042991 69 VRIDRYLEDGAEDSET 84 (93)
Q Consensus 69 ~~~~~~~~~ga~d~l~ 84 (93)
+...+|+..|.|+|+-
T Consensus 63 qvllDA~teGSDdfLE 78 (113)
T 3e56_A 63 QVLLDALTEGSDDFLE 78 (113)
T ss_dssp HHHHHHHHHCCTTTEE
T ss_pred HHHHHHHhcCcHHHHH
Confidence 3445788999999974
No 187
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=32.17 E-value=57 Score=19.17 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|++.-.+-..++......+.|+|.++.=
T Consensus 169 ~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVG 199 (219)
T 2h6r_A 169 KDVKVLCGAGISKGEDVKAALDLGAEGVLLA 199 (219)
T ss_dssp TTCEEEECSSCCSHHHHHHHHTTTCCCEEES
T ss_pred CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEc
Confidence 4788887777677788777888999998763
No 188
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.54 E-value=95 Score=19.27 Aligned_cols=33 Identities=3% Similarity=-0.076 Sum_probs=22.6
Q ss_pred CCcEEEEcC--CCCHHHHHHHHHcCCcceeeccch
Q 042991 56 EIPVVIMSP--EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 56 ~~pii~lt~--~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
++-+|+++. ....+....++++|.+=++-||+.
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a 100 (344)
T 3mz0_A 66 NVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLA 100 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSC
T ss_pred CCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCC
Confidence 344444443 344666677899999888999975
No 189
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=31.30 E-value=31 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=22.6
Q ss_pred cCCcEE--EEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVV--IMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii--~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|++ ...+-.+.+...++++.|++.++.-
T Consensus 206 ~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 206 GKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 578888 4444447888888899999887653
No 190
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=31.06 E-value=52 Score=21.15 Aligned_cols=29 Identities=7% Similarity=-0.266 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||...+-.+.+++.+++.+||+.+.
T Consensus 276 ~~ipII~~GGI~s~~da~~~l~aGAd~V~ 304 (354)
T 4ef8_A 276 PGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp TTSEEEEESCCCSHHHHHHHHHHTEEEEE
T ss_pred CCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 47999998888889999999999997654
No 191
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=30.75 E-value=92 Score=19.57 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.+|+++=-+=.+.+.+.+.+++||+..+.-
T Consensus 227 ~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 227 DQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp TCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 789987767788888888999999987764
No 192
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=30.62 E-value=71 Score=18.86 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAE 80 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~ 80 (93)
..+||+..-+-.+.++..+.+++||+
T Consensus 174 ~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 174 GRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp TSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCch
Confidence 47999988887888899999999987
No 193
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=29.84 E-value=62 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.-.+-.+..++.+++.+||+.+..
T Consensus 277 ~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 277 DKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp TTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 478998777778899999999999988543
No 194
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=29.84 E-value=95 Score=18.77 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
.++|+++=.+-++++.+.+++..|||.++.=
T Consensus 204 ~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 204 HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4789886555566888888899999998753
No 195
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=29.79 E-value=80 Score=20.89 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee-ccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET-CQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~-kP~ 87 (93)
..+|+|+-.+-.+..++.+++.+||+.... +++
T Consensus 335 ~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~ 368 (491)
T 1zfj_A 335 YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMF 368 (491)
T ss_dssp TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred cCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHh
Confidence 478998777778899999999999998655 443
No 196
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.79 E-value=46 Score=19.28 Aligned_cols=28 Identities=7% Similarity=-0.114 Sum_probs=20.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|++.+-+- +++.+.++++.|++.+-
T Consensus 143 ~~iPviaiGGI-~~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 143 IDSKVMALGGI-NEDNLLEIKDFGFGGAV 170 (210)
T ss_dssp SSTTEEEESSC-CTTTHHHHHHTTCSEEE
T ss_pred CCCCEEEECCC-CHHHHHHHHHhCCCEEE
Confidence 47899976554 46677788899998763
No 197
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=28.82 E-value=87 Score=19.47 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHH-cCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLE-DGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~-~ga~d~l 83 (93)
..+|||...+-.+.++..++++ .|++.+.
T Consensus 182 ~~ipVi~~GgI~s~~da~~~l~~~gad~V~ 211 (318)
T 1vhn_A 182 KRIPTFVSGDIFTPEDAKRALEESGCDGLL 211 (318)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHHHCCSEEE
T ss_pred cCCeEEEECCcCCHHHHHHHHHcCCCCEEE
Confidence 3789997776678889999998 6888654
No 198
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=28.63 E-value=54 Score=20.00 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 57 IPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 57 ~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.-|.+.+.+.......+.+.|||-||+--+.
T Consensus 177 I~rVAv~~GsG~~~~~~a~~~gaD~~ITGd~~ 208 (267)
T 2fyw_A 177 ISRVAICGGSGQSFYKDALAKGADVYITGDIY 208 (267)
T ss_dssp EEEEEEESSSCGGGHHHHHHTTCSEEEESCCC
T ss_pred eeEEEEEcCCCHHHHHHHHHcCCCEEEEccCc
Confidence 33344444445556677889999999986554
No 199
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=28.42 E-value=80 Score=20.06 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
+.+|||..-+-.+.+...++++ |+|.+.
T Consensus 196 ~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 196 PQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp TTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred CCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 4899997776678888888887 988754
No 200
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=28.41 E-value=28 Score=21.51 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
.++|.|+++...... ..++++...-+||.-|-+.
T Consensus 90 ~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~Dp 123 (283)
T 1qv9_A 90 SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPDA 123 (283)
T ss_dssp SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTSC
T ss_pred CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecCc
Confidence 899999999877665 4577888778998876653
No 201
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=28.41 E-value=76 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
.+|||...+-.+.+++.+++.+||+.+
T Consensus 373 ~iPVIg~GGI~s~~DA~e~l~aGAd~V 399 (443)
T 1tv5_A 373 QIPIIASGGIFSGLDALEKIEAGASVC 399 (443)
T ss_dssp CSCEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 899999888899999999999998765
No 202
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=28.34 E-value=1e+02 Score=19.15 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 80 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 114 (301)
T 1xky_A 80 KRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV 114 (301)
T ss_dssp TSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 678999988876655544 3567899987653
No 203
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=28.24 E-value=1e+02 Score=18.95 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 69 gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3a5f_A 69 KRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVI 103 (291)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEc
Confidence 578999988887755554 3567899987653
No 204
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=28.15 E-value=51 Score=19.88 Aligned_cols=32 Identities=16% Similarity=-0.078 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 57 IPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 57 ~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+.-|.+-+.+.......+.+.|+|-||+--+.
T Consensus 165 i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~ 196 (247)
T 1nmo_A 165 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVS 196 (247)
T ss_dssp EEEEEECSSSCGGGHHHHHHHCCSEEEESCCC
T ss_pred cCEEEEECCCcHHHHHHHHHcCCCEEEEcCcc
Confidence 33444544455566777889999999986554
No 205
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.15 E-value=92 Score=19.44 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~kP 86 (93)
..+|||+=++.++..+.. .+.+.|++..+.-|
T Consensus 75 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 110 (313)
T 3dz1_A 75 KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAP 110 (313)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 678999988876665554 35678999977754
No 206
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=28.12 E-value=1e+02 Score=19.36 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 79 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 113 (318)
T 3qfe_A 79 PDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVL 113 (318)
T ss_dssp TTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 678999988877765554 3567899986654
No 207
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=28.01 E-value=53 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
.+|||...+-.+.+++.+++.+||+...
T Consensus 345 ~iPIIg~GGI~s~eDa~e~l~aGAd~Vq 372 (415)
T 3i65_A 345 QIPIIASGGIFSGLDALEKIEAGASVCQ 372 (415)
T ss_dssp CSCEEECSSCCSHHHHHHHHHHTEEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 7999998888999999999999997643
No 208
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=27.98 E-value=63 Score=19.61 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHc--CCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLED--GAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~--ga~d~l~ 84 (93)
.+|+|.--+-.+.++..+.++. |+++.+.
T Consensus 205 ~iPVIasGGi~s~ed~~~l~~~~~G~~gviv 235 (260)
T 2agk_A 205 DLKIVYAGGAKSVDDLKLVDELSHGKVDLTF 235 (260)
T ss_dssp SCEEEEESCCCCTHHHHHHHHHHTTCEEEEC
T ss_pred CceEEEeCCCCCHHHHHHHHHhcCCCCEEEe
Confidence 8999987777888999998887 8988654
No 209
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=27.89 E-value=1e+02 Score=19.00 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec-cc
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC-QM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k-P~ 87 (93)
..+|||+=++.++..+.. .+.+.|++..+.- |+
T Consensus 75 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 112 (297)
T 3flu_A 75 KRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPY 112 (297)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 678999988877765554 4567899997654 44
No 210
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=27.86 E-value=99 Score=19.41 Aligned_cols=33 Identities=15% Similarity=-0.021 Sum_probs=22.6
Q ss_pred CCcEEEEcC--CCCHHHHHHHHHcCCcceeeccch
Q 042991 56 EIPVVIMSP--EIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 56 ~~pii~lt~--~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
++-+|+++. ....+....++++|.+=++-||+.
T Consensus 87 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla 121 (357)
T 3ec7_A 87 DVEVVIITASNEAHADVAVAALNANKYVFCEKPLA 121 (357)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSC
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCcc
Confidence 344444443 344666678899999889999975
No 211
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=27.70 E-value=85 Score=20.28 Aligned_cols=27 Identities=19% Similarity=-0.053 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 58 PVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 58 pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
|||.--+-.+...+.+++.+||+.+..
T Consensus 201 PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 201 SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 888766667899999999999987554
No 212
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=27.69 E-value=82 Score=19.33 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCHHHHH----HHHHcCCcceeec-cch
Q 042991 56 EIPVVIMSPEIILVRID----RYLEDGAEDSETC-QMW 88 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k-P~~ 88 (93)
.+|||+=++.++..+.. .+.+.|++..+.- |+.
T Consensus 62 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 99 (283)
T 2pcq_A 62 RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRY 99 (283)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcC
Confidence 78999888876655544 3567899997654 543
No 213
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=27.61 E-value=96 Score=19.11 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 68 grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (294)
T 2ehh_A 68 GRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVV 102 (294)
T ss_dssp TSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 578999988876755544 3567899987653
No 214
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=27.36 E-value=98 Score=19.21 Aligned_cols=31 Identities=6% Similarity=-0.152 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 84 grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~ 118 (304)
T 3cpr_A 84 DRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVV 118 (304)
T ss_dssp TTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988887755554 3567899987653
No 215
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=27.23 E-value=1e+02 Score=19.09 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 56 EIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
.+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 77 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 77 KVKVLAGAGSNATHEAVGLAKFAKEHGADGILSV 110 (301)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 79999988877766555 3567899997665
No 216
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.19 E-value=1.1e+02 Score=19.17 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 91 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~ 125 (314)
T 3qze_A 91 GRIPVIAGTGANSTREAVALTEAAKSGGADACLLV 125 (314)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEc
Confidence 678999988877766554 3567899997654
No 217
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=26.78 E-value=90 Score=19.37 Aligned_cols=31 Identities=6% Similarity=0.003 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 79 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 113 (303)
T 2wkj_A 79 GKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV 113 (303)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEec
Confidence 678999988876655544 3567899987653
No 218
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=26.62 E-value=96 Score=19.59 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 102 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~ 136 (332)
T 2r8w_A 102 GRRTLMAGIGALRTDEAVALAKDAEAAGADALLLA 136 (332)
T ss_dssp TSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 578999988876655544 3567899997664
No 219
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=26.50 E-value=76 Score=18.03 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++|+++ ++..+.+...+++++|++.++.
T Consensus 158 ~~pi~v-~GGI~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 158 RVPFSV-AGGVKVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp TSCEEE-ESSCCGGGHHHHHHTTCSEEEE
T ss_pred CCCEEE-ECCcCHHHHHHHHHcCCCEEEE
Confidence 788775 4545567777889999987653
No 220
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=26.42 E-value=48 Score=18.91 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+++|++...+- +.+...+++++|++.+..
T Consensus 149 ~~~pvia~GGI-~~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 149 PNVKFVPTGGV-NLDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp TTCEEEEBSSC-CTTTHHHHHHHTCSCEEE
T ss_pred CCCcEEEcCCC-CHHHHHHHHHCCCCEEEE
Confidence 37888865544 466777889999988764
No 221
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.32 E-value=76 Score=16.49 Aligned_cols=30 Identities=7% Similarity=-0.170 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhcCCCceEEeCCHHHHHHH
Q 042991 5 FVDRKVIERLLTISSSRDLYCSCSGRRALQF 35 (93)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~ 35 (93)
+...+...+-.++.||+ +..+.+..+.-..
T Consensus 87 qnrleefsrevrrrgfe-vrtvtspddfkks 116 (134)
T 2l69_A 87 QNRLEEFSREVRRRGFE-VRTVTSPDDFKKS 116 (134)
T ss_dssp HHHHHHHHHHHHHTTCC-EEEESSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCce-EEEecChHHHHHH
Confidence 33334444445556666 6666666554433
No 222
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=26.13 E-value=97 Score=19.17 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 68 grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (297)
T 2rfg_A 68 GRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV 102 (297)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 578999988886755544 3567899997664
No 223
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=26.05 E-value=55 Score=18.63 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|+++..+-+ .+.+.++.+.|++.+..
T Consensus 161 ~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 161 VKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp CSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 478988655544 77777788899988754
No 224
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=25.97 E-value=95 Score=19.08 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 68 gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 102 (289)
T 2yxg_A 68 GRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSI 102 (289)
T ss_dssp TSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 578999988876755544 3567899987653
No 225
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=25.84 E-value=36 Score=21.31 Aligned_cols=35 Identities=20% Similarity=0.042 Sum_probs=24.9
Q ss_pred cCCcEEEEcC--CCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSP--EIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~--~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+++=+|+++. ....+....|+++|.+=|+=||+..
T Consensus 93 ~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~ 129 (393)
T 4fb5_A 93 PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAP 129 (393)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCS
T ss_pred CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcc
Confidence 4444444443 3447777789999999999999863
No 226
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=25.81 E-value=44 Score=20.49 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=21.7
Q ss_pred cCCcEE-EEcCCC-CHHHHHHHHHcCCcceee
Q 042991 55 REIPVV-IMSPEI-ILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii-~lt~~~-~~~~~~~~~~~ga~d~l~ 84 (93)
..+|++ ...+.. +.+.+.+++++|++.++.
T Consensus 206 ~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvv 237 (297)
T 2zbt_A 206 GRLPVVNFAAGGIATPADAALMMHLGMDGVFV 237 (297)
T ss_dssp SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 467876 233444 788888889999998764
No 227
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=25.68 E-value=1e+02 Score=19.14 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 80 grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~ 114 (306)
T 1o5k_A 80 GKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVV 114 (306)
T ss_dssp TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988887755554 3567899987653
No 228
>2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus}
Probab=25.68 E-value=11 Score=19.07 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=11.6
Q ss_pred HHHHcCCcceeeccc
Q 042991 73 RYLEDGAEDSETCQM 87 (93)
Q Consensus 73 ~~~~~ga~d~l~kP~ 87 (93)
..++.|+++|++|-+
T Consensus 68 aRvDEGveEFFsKkv 82 (85)
T 2kz7_C 68 GRVDEGVDEFFTKKV 82 (85)
T ss_dssp CSSCCCCSSSSCCCC
T ss_pred hhhhccHHHHHHhhh
Confidence 346889999998854
No 229
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.65 E-value=1e+02 Score=18.94 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 70 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 104 (292)
T 3daq_A 70 KRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLI 104 (292)
T ss_dssp TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEEC
Confidence 678999988877666554 3567899997665
No 230
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=25.64 E-value=83 Score=19.45 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..++|.+.| -++++...+..+.|+|..++-
T Consensus 267 ~Gl~V~~WT-Vn~~~~~~~l~~~GVDgIiTD 296 (313)
T 3l12_A 267 LGLIVLTWT-VNEPEDIRRMATTGVDGIVTD 296 (313)
T ss_dssp TTCEEEEBC-CCSHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEEEc-CCCHHHHHHHHHcCCCEEEeC
Confidence 778898888 467778888899999998874
No 231
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=25.50 E-value=1.1e+02 Score=18.16 Aligned_cols=30 Identities=7% Similarity=-0.103 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.+.|- ++++...+.++.|++..++-
T Consensus 209 ~G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD 238 (252)
T 3qvq_A 209 AGYKVLAFTI-NDESLALKLYNQGLDAVFSD 238 (252)
T ss_dssp TTCEEEEECC-CCHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEcC-CCHHHHHHHHHcCCCEEEeC
Confidence 7788988875 67778888899999998875
No 232
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=25.47 E-value=1.1e+02 Score=19.06 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 92 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 126 (315)
T 3na8_A 92 HRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL 126 (315)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 679999988877765554 3568899997765
No 233
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=25.45 E-value=97 Score=19.08 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 72 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 106 (293)
T 1f6k_A 72 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 106 (293)
T ss_dssp TSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988887765554 3567899987653
No 234
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=25.31 E-value=1.2e+02 Score=19.28 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 91 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~ 125 (344)
T 2hmc_A 91 AGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVI 125 (344)
T ss_dssp TTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988877755444 3567899987664
No 235
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=25.07 E-value=1.2e+02 Score=18.92 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceee-ccch
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSET-CQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~-kP~~ 88 (93)
..+|||+=++.++..+.. .+.+.|++..+. -|+.
T Consensus 82 gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 82 KNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 678999888876655544 456889999776 4543
No 236
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=24.96 E-value=98 Score=17.28 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.++|+.........+-+.|.++|+..
T Consensus 61 ~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~ 91 (189)
T 3mn1_A 61 SGVTTAIISGRKTAIVERRAKSLGIEHLFQG 91 (189)
T ss_dssp TTCEEEEECSSCCHHHHHHHHHHTCSEEECS
T ss_pred CCCEEEEEECcChHHHHHHHHHcCCHHHhcC
Confidence 6789999998777665555567788887653
No 237
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=24.91 E-value=77 Score=16.05 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=4.9
Q ss_pred EeCCHHHHHHHh
Q 042991 25 CSCSGRRALQFL 36 (93)
Q Consensus 25 ~~~~~~~a~~~~ 36 (93)
.+.+.++|++.+
T Consensus 101 i~~~~~~Al~~~ 112 (117)
T 4hyl_A 101 ACASMDEALRIL 112 (117)
T ss_dssp EESCHHHHHHHH
T ss_pred ecCCHHHHHHHh
Confidence 334444444433
No 238
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=24.87 E-value=1.1e+02 Score=19.23 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=23.4
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 90 grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~ 124 (315)
T 3si9_A 90 KRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVV 124 (315)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988877766555 3568899997654
No 239
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.80 E-value=1e+02 Score=18.99 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++..+..+.. .+.+.|++..+.-
T Consensus 71 gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 71 APSRIVTGVLVDSIEDAADQSAEALNAGARNILLA 105 (294)
T ss_dssp CGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEc
Confidence 568999888876655544 3567899987664
No 240
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=24.41 E-value=1.1e+02 Score=18.79 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 68 gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (292)
T 2vc6_A 68 GRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIV 102 (292)
T ss_dssp TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 578999888876655544 3567899987653
No 241
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=24.34 E-value=83 Score=19.84 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQM 87 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~ 87 (93)
++.+|.+-.. +.++..+++++|++-.....+
T Consensus 208 p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~ 238 (298)
T 3gnn_A 208 AEVPVQIEVE--TLDQLRTALAHGARSVLLDNF 238 (298)
T ss_dssp --CCCEEEES--SHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCC
Confidence 5567766543 345677788889876665544
No 242
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=24.20 E-value=1.1e+02 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 99 grvpViaGvg~~st~eai~la~~A~~~Gadavlv~ 133 (343)
T 2v9d_A 99 RRVPVLIGTGGTNARETIELSQHAQQAGADGIVVI 133 (343)
T ss_dssp TSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 678999988877755554 3567899987653
No 243
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=24.19 E-value=1.2e+02 Score=18.68 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 69 gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3tak_A 69 KRIPIIAGTGANSTREAIELTKAAKDLGADAALLV 103 (291)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 678999988877765554 3567899997654
No 244
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=23.98 E-value=99 Score=19.92 Aligned_cols=29 Identities=31% Similarity=0.070 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..|||.-.+-.+..++.+++.+||+.+..
T Consensus 278 ~~pVia~GGI~~~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 278 GKPVLIDSGFRRGSDIVKALALGAEAVLL 306 (380)
T ss_dssp CSCEEECSSCCSHHHHHHHHHTTCSCEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHhCCcHhhe
Confidence 45898777777888999999999988654
No 245
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=23.80 E-value=1.2e+02 Score=22.31 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||..-+-.+.+++.+++.+||+.+..
T Consensus 786 ~~ipvi~~GGI~s~~da~~~l~~Ga~~v~v 815 (1025)
T 1gte_A 786 PGFPILATGGIDSAESGLQFLHSGASVLQV 815 (1025)
T ss_dssp TTCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEecCcCCHHHHHHHHHcCCCEEEE
Confidence 479999988888999999999999988654
No 246
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=23.65 E-value=1e+02 Score=18.58 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++.++.+|.......+..++++|+..|=.
T Consensus 28 ~~v~l~AV~Kahg~~~i~~~~~~G~~~fge 57 (245)
T 3sy1_A 28 EEITLVAVSKTKPASAIAEAIDAGQRQFSE 57 (245)
T ss_dssp GGCEEEEECTTCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 456688888776666666777888876643
No 247
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=23.23 E-value=58 Score=18.80 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
++|+++..+-+ .+.+.++.+.|++.+..
T Consensus 172 ~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 172 SIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp CCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 38988765544 66777778899988654
No 248
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.92 E-value=1.2e+02 Score=18.90 Aligned_cols=31 Identities=10% Similarity=-0.058 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 83 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 83 DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 678999988877765554 3567899997665
No 249
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=22.88 E-value=70 Score=18.26 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
+++|+++-. ..+.+...++.++|++.++.
T Consensus 158 ~~~~i~~~g-GI~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 158 RKARIAVAG-GISSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SSCEEEEES-SCCTTTHHHHHTTCCSEEEE
T ss_pred CCCcEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 478887544 44577777888999988765
No 250
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=22.59 E-value=1.5e+02 Score=18.54 Aligned_cols=34 Identities=12% Similarity=-0.083 Sum_probs=22.1
Q ss_pred HhhhhcCCcEEEEcCCC------------C-----HHHHHHHHHcCCccee
Q 042991 50 RTIYSREIPVVIMSPEI------------I-----LVRIDRYLEDGAEDSE 83 (93)
Q Consensus 50 l~~~~~~~pii~lt~~~------------~-----~~~~~~~~~~ga~d~l 83 (93)
+....++.||++-++++ . ......|...||++.+
T Consensus 189 lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~ 239 (285)
T 3sz8_A 189 MAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLF 239 (285)
T ss_dssp HHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEE
T ss_pred HHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEE
Confidence 44432368999867665 3 4455678899999743
No 251
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=22.52 E-value=78 Score=20.01 Aligned_cols=29 Identities=7% Similarity=-0.266 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCccee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSE 83 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l 83 (93)
..+|||...+=.+.+++.+.+.+||+-+-
T Consensus 276 ~~~pIIg~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 276 PGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHHTEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 67899988888889999999999997643
No 252
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=22.39 E-value=1.2e+02 Score=17.56 Aligned_cols=30 Identities=20% Similarity=-0.007 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.+.|- +++....+..+.|++.+++-
T Consensus 185 ~G~~v~~wtv-n~~~~~~~l~~~GvdgI~TD 214 (224)
T 1vd6_A 185 RGLFVVAWTV-NEEGEARRLLALGLDGLIGD 214 (224)
T ss_dssp TTCEEEEECC-CCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEEeC-CCHHHHHHHHhcCCCEEEcC
Confidence 7788888884 56777788899999988775
No 253
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=22.35 E-value=1.1e+02 Score=18.51 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.++.++.+|.......+..++++|+..|=.
T Consensus 29 ~~v~l~AVvKahga~~i~~~~~~G~~~fge 58 (244)
T 3r79_A 29 ADVALVAVSKTFDAEAIQPVIDAGQRVFGE 58 (244)
T ss_dssp GGSEEEEECTTCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCcCHHHHHHHHHCCCCEEEE
Confidence 456688888776666666777888877643
No 254
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=22.33 E-value=1.1e+02 Score=19.04 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCH----HHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIIL----VRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~----~~~~~~~~~ga~d~l~ 84 (93)
..+|.|++++..+. +....+.+.|+++++.
T Consensus 220 ~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 220 INMPWVILSSGVDEKLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp CCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 46784556655544 3466778899998875
No 255
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=22.30 E-value=1.4e+02 Score=20.07 Aligned_cols=29 Identities=21% Similarity=0.033 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 56 EIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 56 ~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
.+|+|.=-+-.+..++.+|+.+||+....
T Consensus 352 ~ipvia~GGi~~~~di~kAlalGA~~V~i 380 (503)
T 1me8_A 352 YIPVCSDGGIVYDYHMTLALAMGADFIML 380 (503)
T ss_dssp ECCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68998766778899999999999997544
No 256
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=22.29 E-value=1.4e+02 Score=18.35 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeecc
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQ 86 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP 86 (93)
.++|+++=.+=.+++...++...|||.++.-.
T Consensus 205 ~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 205 NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 56898865555567777668999999988643
No 257
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=22.09 E-value=1.3e+02 Score=17.71 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.+.|- +++....+..+.|++..++-
T Consensus 206 ~G~~v~~wTv-n~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 206 AGLRILVYTV-NKPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp TTCEEEEECC-CCHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEEEcc-CCHHHHHHHHHcCCCEEEeC
Confidence 6788888884 56777788889999998875
No 258
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=21.86 E-value=1.4e+02 Score=19.25 Aligned_cols=31 Identities=10% Similarity=-0.106 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++.++..+.. .+.+.|++..+.-
T Consensus 127 grvpViaGvg~~st~eai~la~~A~~~Gadavlvv 161 (360)
T 4dpp_A 127 GSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 161 (360)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 678999988876665554 3567899986664
No 259
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.83 E-value=51 Score=21.12 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=24.9
Q ss_pred cCCcEEEEcCC--CCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSPE--IILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~~--~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+++-+|+++.. ...+....|+++|.+=|+=||+..
T Consensus 95 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~ 131 (412)
T 4gqa_A 95 PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAV 131 (412)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCS
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcC
Confidence 44445545443 446777789999999999999863
No 260
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=21.65 E-value=95 Score=15.93 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=9.6
Q ss_pred cCCCceEEeCCHHHHHHHhc
Q 042991 18 SSSRDLYCSCSGRRALQFLG 37 (93)
Q Consensus 18 ~~~~~v~~~~~~~~a~~~~~ 37 (93)
.|.. +..++-.....+.++
T Consensus 80 ~g~~-l~l~~~~~~v~~~l~ 98 (121)
T 3t6o_A 80 QQGV-FALCSVSPYCVEVLQ 98 (121)
T ss_dssp TTCE-EEEESCCHHHHHHHT
T ss_pred cCCE-EEEEeCCHHHHHHHH
Confidence 4555 555554444444443
No 261
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.57 E-value=1.5e+02 Score=18.48 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=21.7
Q ss_pred cCCcEEEEcCCCCHHHHH----HHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRID----RYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~----~~~~~ga~d~l~k 85 (93)
..+|||+=++. +..+.. .+.+.|++..+.-
T Consensus 80 grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 80 GRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIH 113 (314)
T ss_dssp TSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 67899988887 654444 3567899997664
No 262
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=21.54 E-value=1.4e+02 Score=18.31 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+++=.+=.+++...+++..|||..+.-
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4689887555567878776899999998764
No 263
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=21.40 E-value=1.6e+02 Score=18.75 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcce
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDS 82 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~ 82 (93)
..+|||..-.-.+.+...++++.|..|.
T Consensus 276 ~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~ 303 (343)
T 3kru_A 276 CNIKTSAVGLITTQELAEEILSNERADL 303 (343)
T ss_dssp HTCEEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred cCcccceeeeeeHHHHHHHHHhchhhHH
Confidence 4689887766678888889999984444
No 264
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=21.34 E-value=68 Score=20.25 Aligned_cols=34 Identities=3% Similarity=-0.080 Sum_probs=24.3
Q ss_pred cCCcEEEEc--CCCCHHHHHHHHHcCCcceeeccch
Q 042991 55 REIPVVIMS--PEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 55 ~~~pii~lt--~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+++-+|+++ .....+....++++|.+=++=||+.
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a 117 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIA 117 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSC
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCC
Confidence 444444444 3456777788999999999999985
No 265
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=21.13 E-value=1.6e+02 Score=18.47 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=42.4
Q ss_pred hhcCCCceEEeCCHHHHHHHhccCcc------c----CCCchH----------HHh-------hhhcCCcEEEEc-CCCC
Q 042991 16 TISSSRDLYCSCSGRRALQFLGLDEE------Q----SANGFD----------VRT-------IYSREIPVVIMS-PEII 67 (93)
Q Consensus 16 ~~~~~~~v~~~~~~~~a~~~~~~~~~------~----~~~~~d----------~l~-------~~~~~~pii~lt-~~~~ 67 (93)
++.|..++.++.|.++|..+...... . .+.|.. .+. ...+++.++.-. +=.+
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIst 239 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIAN 239 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCS
T ss_pred HHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCC
Confidence 35565458889999998888643221 1 111211 111 112776555544 3367
Q ss_pred HHHHHHHHHc--CCcceeecc
Q 042991 68 LVRIDRYLED--GAEDSETCQ 86 (93)
Q Consensus 68 ~~~~~~~~~~--ga~d~l~kP 86 (93)
+++...+++. |+++|+.-.
T Consensus 240 peDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 240 PEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHHHhcCCCccEEEeeh
Confidence 8898999998 999998654
No 266
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=20.81 E-value=1.5e+02 Score=19.71 Aligned_cols=30 Identities=13% Similarity=-0.016 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
..+|||.=.+-.+..++.+++.+||+....
T Consensus 327 ~~vpVia~GGi~~~~di~kalalGA~~v~~ 356 (486)
T 2cu0_A 327 YGLYVIADGGIRYSGDIVKAIAAGADAVML 356 (486)
T ss_dssp HTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCcEEecCCCCCHHHHHHHHHcCCCceee
Confidence 468998766777888999999999998544
No 267
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=20.70 E-value=1.4e+02 Score=17.47 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=21.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+|+|+=-.=.+++++.+ +++||+..-+-
T Consensus 148 ~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs 177 (188)
T 1vkf_A 148 PGRTVIAAGLVETEEEARE-ILKHVSAISTS 177 (188)
T ss_dssp TTSEEEEESCCCSHHHHHH-HTTTSSEEEEC
T ss_pred cCCCEEEECCcCCHHHHHH-HHCCCeEEEeC
Confidence 5668875444567778878 99999876553
No 268
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=20.60 E-value=43 Score=20.91 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=24.8
Q ss_pred cCCcEEEEcC--CCCHHHHHHHHHcCCcceeeccchh
Q 042991 55 REIPVVIMSP--EIILVRIDRYLEDGAEDSETCQMWA 89 (93)
Q Consensus 55 ~~~pii~lt~--~~~~~~~~~~~~~ga~d~l~kP~~~ 89 (93)
+++=+|+++. ....+....|+++|-+=|+=||+..
T Consensus 74 ~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~ 110 (390)
T 4h3v_A 74 DDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLAN 110 (390)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCccc
Confidence 4454444444 3446677789999999999999863
No 269
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=20.43 E-value=1.1e+02 Score=16.23 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceee
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSET 84 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~ 84 (93)
...+++++|+..........-+.|...|+.
T Consensus 51 ~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 51 MGITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 557888888876665544445678777663
No 270
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.13 E-value=71 Score=20.20 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeeccch
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETCQMW 88 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~ 88 (93)
+..||.+-.. +.++..+++++|+|-.+..-++
T Consensus 206 p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s 237 (300)
T 3l0g_A 206 KNEYIAIECD--NISQVEESLSNNVDMILLDNMS 237 (300)
T ss_dssp SSCCEEEEES--SHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCC
Confidence 6677777554 3577778899999877665443
No 271
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=20.04 E-value=1.5e+02 Score=17.51 Aligned_cols=30 Identities=7% Similarity=-0.057 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHcCCcceeec
Q 042991 55 REIPVVIMSPEIILVRIDRYLEDGAEDSETC 85 (93)
Q Consensus 55 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~k 85 (93)
..+++.+.|- +++....+..+.|++..++-
T Consensus 195 ~G~~v~~WTV-n~~~~~~~l~~~GVdgIiTD 224 (238)
T 3no3_A 195 LGMTSNVWTV-DDPKLMEEMIDMGVDFITTD 224 (238)
T ss_dssp TTCEEEEECC-CSHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEEECC-CCHHHHHHHHHcCCCEEECC
Confidence 6788888874 66777788899999998875
Done!