BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042996
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944A9|NPS11_ARATH Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2
Length = 265
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/260 (78%), Positives = 234/260 (90%), Gaps = 3/260 (1%)
Query: 3 LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
+S++S++LAEI GQI DIFRALSNGFQKLEKIKD NRQSRQLEELTDKMR+CK LIK+FD
Sbjct: 4 ISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFD 63
Query: 63 REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL-ENNKRVDLFDGPNEGF 121
RE+K +E ND TN+ML++++QSMVKELNSYVALKK++ +NL NNKRVDLFDGP E
Sbjct: 64 REIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEH 123
Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
E+NVLLAS+M+NQ+LMD GN MMD+TDQAIER K++V ETINVGT+T+A LKAQTEQMS
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183
Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
R+VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA LFLIVIGVIAIIIVK+VNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243
Query: 242 RDIP--GLAPPAMARRLLSN 259
RDIP GLAPPAM RRLL N
Sbjct: 244 RDIPGVGLAPPAMNRRLLWN 263
>sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1
Length = 269
Score = 342 bits (878), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 216/256 (84%), Gaps = 5/256 (1%)
Query: 6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
+S L +I+G+I D FRAL+NGFQ+L+KIKD RQS+QLEELTDKMRECKRL+KEFDRE+
Sbjct: 7 MSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDREL 66
Query: 66 KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDG----PNEGF 121
KD E RN PE NK L+++KQSM+KELNSYVAL+K + + L NK+V+LFD E
Sbjct: 67 KDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTL-GNKKVELFDMGAGVSGEPT 125
Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
AE+NV +ASSM+NQ+L+D+G + MDETDQAIERSKQVV +T+ VGT+TAA LK QT+QM
Sbjct: 126 AEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMG 185
Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
R+VN LD+I FSIKKASQLVKEIGRQVATDKCIM LFLIV GV+AIIIVK+VNPNNKDI
Sbjct: 186 RVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDI 245
Query: 242 RDIPGLAPPAMARRLL 257
RDIPGLAPPA +R+LL
Sbjct: 246 RDIPGLAPPAQSRKLL 261
>sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1
Length = 265
Score = 338 bits (866), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/256 (68%), Positives = 218/256 (85%), Gaps = 5/256 (1%)
Query: 6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
+S L +I+G+I D FRAL+NGFQ+L+KIKD +RQS+QLEEL +KMR+CKRL+KEFDRE+
Sbjct: 7 MSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDREL 66
Query: 66 KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDG----PNEGF 121
KD E RN P+ NK L+++KQSM+KELNSYVAL+K + L NK+V+LFD E
Sbjct: 67 KDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTL-GNKKVELFDTGAGVSGEPT 125
Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
AE+NV +AS+M+NQ+L+D+G + MDETDQAIERSKQVVH+T+ VGT+TA+ LK QT+QM
Sbjct: 126 AEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMG 185
Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
R+VN+LD+I FS+KKASQLVKEIGRQVATDKCIMA LFLIV GVIAIIIVK+VNPNNKDI
Sbjct: 186 RVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDI 245
Query: 242 RDIPGLAPPAMARRLL 257
RDIPGLAPPA +R+LL
Sbjct: 246 RDIPGLAPPAQSRKLL 261
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Query: 53 ECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQS-----------MVKELNSYVA-LKKQ 100
E K+L+++FD N E N+ L+E ++ M+ +L +Y L K
Sbjct: 40 EKKKLVRDFDE--------NQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKL 91
Query: 101 HQ------TNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIER 154
H+ R DL G + +N L + + L+ G ++ Q+IER
Sbjct: 92 HREVRSTPLTAAPGGRGDLKYGT---YTLENEHLNRLQSQRALLLQGTESLNRATQSIER 148
Query: 155 SKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCI 214
S ++ ET +GTE L Q +Q+ R + L + + ++ K+ ++++ + R+V T+K +
Sbjct: 149 SHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLL 208
Query: 215 MAMLFLIVIGVIAIIIV 231
++++ L+ + ++ ++
Sbjct: 209 LSVIILLELAILVGLVY 225
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 62/111 (55%)
Query: 121 FAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQM 180
+A +N + + + L+ G ++ Q+IERS ++ ET +G+E L Q +Q+
Sbjct: 115 YAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQL 174
Query: 181 SRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIV 231
R + L + ++ K+ ++++ + R+V T+K +++++ L+ + ++ ++
Sbjct: 175 ERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVY 225
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 58/99 (58%)
Query: 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHF 192
+ + L+ G ++ Q+IERS ++ ET +G+E L Q +Q+ R + L + +
Sbjct: 127 SQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNE 186
Query: 193 SIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIV 231
++ K+ ++++ + R+V T+K +++++ ++ + ++ ++
Sbjct: 187 NLSKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVY 225
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 50/92 (54%)
Query: 121 FAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQM 180
+A +N + + + ++ G ++ Q+IERS ++ ET +G+E L Q +Q+
Sbjct: 115 YAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQL 174
Query: 181 SRIVNELDSIHFSIKKASQLVKEIGRQVATDK 212
R + L + ++ K+ ++++ + R+V T+K
Sbjct: 175 ERTKSRLVNTSENLSKSRKILRSMSRKVTTNK 206
>sp|P36976|SNP25_TORMA Synaptosomal-associated protein 25 OS=Torpedo marmorata GN=snap25
PE=2 SV=1
Length = 210
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194
+++ +++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +
Sbjct: 16 EEMQRCADQITDESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDM 75
Query: 195 KKASQLVKEIGRQVATDKC 213
K+A + + ++G+ C
Sbjct: 76 KEAEKNLSDLGKCCGLCSC 94
>sp|P36977|SN25A_CARAU Synaptosomal-associated protein 25-A OS=Carassius auratus
GN=snap25a PE=2 SV=1
Length = 204
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKDAEKNL 78
Query: 202 KEIGRQVATDKC 213
++G+ C
Sbjct: 79 NDLGKFCGLCSC 90
>sp|Q5TZ66|SN25A_DANRE Synaptosomal-associated protein 25-A OS=Danio rerio GN=snap25a PE=2
SV=1
Length = 204
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKDAEKNL 78
Query: 202 KEIGRQVATDKC 213
++G+ C
Sbjct: 79 NDLGKFCGLCSC 90
>sp|P60881|SNP25_RAT Synaptosomal-associated protein 25 OS=Rattus norvegicus GN=Snap25
PE=1 SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|Q5R1X1|SNP25_PANTR Synaptosomal-associated protein 25 OS=Pan troglodytes GN=SNAP25
PE=2 SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|P60879|SNP25_MOUSE Synaptosomal-associated protein 25 OS=Mus musculus GN=Snap25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|P60877|SNP25_MACMU Synaptosomal-associated protein 25 OS=Macaca mulatta GN=SNAP25 PE=2
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|P60880|SNP25_HUMAN Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|P60878|SNP25_CHICK Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|Q17QQ3|SNP25_BOVIN Synaptosomal-associated protein 25 OS=Bos taurus GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|Q6PC54|SN25B_DANRE Synaptosomal-associated protein 25-B OS=Danio rerio GN=snap25b PE=2
SV=1
Length = 203
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLGDESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGRQVATDKC 213
++G C
Sbjct: 79 TDLGNLCGLCPC 90
>sp|P36978|SN25B_CARAU Synaptosomal-associated protein 25-B OS=Carassius auratus
GN=snap25b PE=2 SV=1
Length = 203
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A + +
Sbjct: 19 DQLGDESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 202 KEIGRQVATDKC 213
++G C
Sbjct: 79 TDLGNLCGLCPC 90
>sp|Q5NVG5|SNP25_PONAB Synaptosomal-associated protein 25 OS=Pongo abelii GN=SNAP25 PE=2
SV=1
Length = 206
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
+++ DE+ ++ R Q+V E+ + G T +L Q EQ+ RI +D I+ +K+A +
Sbjct: 19 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNS 78
Query: 202 KEIGR 206
++G+
Sbjct: 79 TDLGK 83
>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens GN=TRAK2 PE=1
SV=2
Length = 914
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 31 LEKIKDVNRQ-SRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVK 89
L+ KD RQ + +L EL D+ EC ++ E E+K++ R+ P + S+ +
Sbjct: 312 LQASKDAQRQLTMELHELQDRNMECLGMLHESQEEIKELRSRSGPTAHLYFSQSYGAFTG 371
Query: 90 E 90
E
Sbjct: 372 E 372
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 19 DIFRALSNGFQKLEKIKDVNRQSRQL-----EELTDKMRECKRLIKEFDREVKDIE--GR 71
D+F FQ + + R+ +QL E+ +RE + I E + + ++E +
Sbjct: 2 DVFERTEQNFQHV--CNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQ 59
Query: 72 NDPETNKMLSEKKQ--SMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLA 129
N P+ K+ ++ KQ S +++ V L + +N N+ P +D
Sbjct: 60 NHPQRIKLQTKTKQYHSDIQKYKREVQLAQLQSSNQTNS-------NPWSNAPDD---YQ 109
Query: 130 SSMTNQ-QLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELD 188
S NQ Q + G+ M+D T + R+ Q+ ++ +G L Q EQ+ + ++L
Sbjct: 110 SQYDNQRQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLH 169
Query: 189 SIHFSIKKASQLVKEIGRQVATDK 212
IK A +++ I R++AT+K
Sbjct: 170 ETDDQIKSARKIMTGIARRLATNK 193
>sp|Q9UPV9|TRAK1_HUMAN Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1
SV=1
Length = 953
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 29 QKLEKIKDVNRQ-SRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETN 77
Q L KD RQ + +L EL DK EC ++ E E+K++ + P T
Sbjct: 310 QHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTT 359
>sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=ebh PE=4 SV=1
Length = 10421
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 10 LAEING-----QITDIFRALSNGFQ-KLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63
LA+ NG Q+ + A +GF+ ++++ D+N Q++++ D+ + R + + +
Sbjct: 9148 LAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLN----QIQQIVDEAKALNRAMDQLSQ 9203
Query: 64 EVKDIEGRNDPETN 77
E+ D EGR TN
Sbjct: 9204 EITDNEGRTKGSTN 9217
>sp|Q2FH04|EBH_STAA3 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain USA300) GN=ebh PE=4 SV=1
Length = 10421
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 10 LAEING-----QITDIFRALSNGFQ-KLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63
LA+ NG Q+ + A +GF+ ++++ D+N Q++++ D+ + R + + +
Sbjct: 9148 LAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLN----QIQQIVDEAKALNRAMDQLSQ 9203
Query: 64 EVKDIEGRNDPETN 77
E+ D EGR TN
Sbjct: 9204 EITDNEGRTKGSTN 9217
>sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain COL) GN=ebh PE=4 SV=1
Length = 10498
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 10 LAEING-----QITDIFRALSNGFQ-KLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63
LA+ NG Q+ + A +GF+ ++++ D+N Q++++ D+ + R + + +
Sbjct: 9148 LAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLN----QIQQIVDEAKALNRAMDQLSQ 9203
Query: 64 EVKDIEGRNDPETN 77
E+ D EGR TN
Sbjct: 9204 EITDNEGRTKGSTN 9217
>sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain NCTC 8325) GN=ebh PE=1 SV=1
Length = 9535
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 10 LAEING-----QITDIFRALSNGFQ-KLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63
LA+ NG Q+ + A +GF+ ++++ D+N Q++++ D+ + R + + +
Sbjct: 8185 LAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLN----QIQQIVDEAKALNRAMDQLSQ 8240
Query: 64 EVKDIEGRNDPETN 77
E+ D EGR TN
Sbjct: 8241 EITDNEGRTKGSTN 8254
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU
85-389) GN=prfA PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKE 60
M++SS SD+L +I G+ D+ LS+G E +K +++ LE++ K++E + E
Sbjct: 1 MNISSFSDNLTKILGKYEDLSEKLSSGIGGEEFVK-ASKEYADLEDIVQKIKEYNKAKAE 59
Query: 61 FD 62
+
Sbjct: 60 LE 61
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain
RML369-C) GN=prfA PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKE 60
M++SS SD+L +I G+ D+ LS+G E +K +++ LE++ K++E + E
Sbjct: 1 MNISSFSDNLTKILGKYEDLSEKLSSGIGGEEFVK-ASKEYADLEDIVQKIKEYNKAKAE 59
Query: 61 FD 62
+
Sbjct: 60 LE 61
>sp|A6QGY4|EBHA_STAAE Extracellular matrix-binding protein EbhA OS=Staphylococcus aureus
(strain Newman) GN=ebhA PE=4 SV=1
Length = 3462
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 10 LAEING-----QITDIFRALSNGFQ-KLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63
LA+ NG Q+ + A +GF+ ++++ D+N Q++++ D+ + R + + +
Sbjct: 2112 LAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLN----QIQQIVDEAKALNRAMDQLSQ 2167
Query: 64 EVKDIEGRNDPETN 77
E+ D EGR TN
Sbjct: 2168 EITDNEGRTKGSTN 2181
>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
Length = 245
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 31/253 (12%)
Query: 3 LSSISDDLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEF 61
+SS D + +I D L + F K E+I D+ Q+ +EL + + E
Sbjct: 1 MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDEL 60
Query: 62 DREV----KD--IEGRNDPETNKM--LSEKKQSMVKELNSYV-ALKKQHQTNLENNKRVD 112
++ + KD G ++ E K + ++ V+ + S V A K + R +
Sbjct: 61 EKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHASEVRRE 120
Query: 113 LFDGPNEGFAE--------DNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETIN 164
L PN G A D+ S +++Q++ ++ + D+ ++ + V
Sbjct: 121 LMRMPNSGEASRYDQYGGRDDDGFVQSESDRQML-----LIKQQDEELDELSKSVQRIGG 175
Query: 165 VGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV-KEIG---RQVATDKCIMAMLFL 220
VG L AQ RI++ELD+ S K + V K++G ++ +M + FL
Sbjct: 176 VGLTIHDELVAQ----ERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMICFL 231
Query: 221 IVIGVIAIIIVKL 233
+V+ +I ++V L
Sbjct: 232 LVLFIILFVLVFL 244
>sp|O00161|SNP23_HUMAN Synaptosomal-associated protein 23 OS=Homo sapiens GN=SNAP23 PE=1
SV=1
Length = 211
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 148 TDQAIERSKQVVH---ETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204
TD+++E +++++ E+ + G +T +L Q EQ++RI LD I+ +++ + + E+
Sbjct: 17 TDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 76
Query: 205 GRQVATDKC 213
+ C
Sbjct: 77 NKCCGLCVC 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,336,097
Number of Sequences: 539616
Number of extensions: 3258521
Number of successful extensions: 18568
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 539
Number of HSP's that attempted gapping in prelim test: 17790
Number of HSP's gapped (non-prelim): 1255
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)